Citrus Sinensis ID: 047840
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 445 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FJY7 | 620 | Pentatricopeptide repeat- | yes | no | 0.957 | 0.687 | 0.388 | 5e-90 | |
| Q9SJZ3 | 681 | Pentatricopeptide repeat- | no | no | 0.975 | 0.637 | 0.363 | 8e-90 | |
| Q9FI80 | 646 | Pentatricopeptide repeat- | no | no | 0.959 | 0.660 | 0.368 | 5e-88 | |
| Q9FG16 | 622 | Pentatricopeptide repeat- | no | no | 0.950 | 0.680 | 0.393 | 4e-87 | |
| Q9FND7 | 612 | Putative pentatricopeptid | no | no | 0.957 | 0.696 | 0.387 | 5e-86 | |
| Q683I9 | 573 | Pentatricopeptide repeat- | no | no | 0.939 | 0.729 | 0.375 | 2e-85 | |
| Q9SZT8 | 632 | Pentatricopeptide repeat- | no | no | 0.921 | 0.648 | 0.373 | 5e-85 | |
| Q9SIL5 | 534 | Pentatricopeptide repeat- | no | no | 0.975 | 0.812 | 0.359 | 1e-83 | |
| Q9FIF7 | 544 | Putative pentatricopeptid | no | no | 0.973 | 0.795 | 0.360 | 3e-82 | |
| Q9SJG6 | 559 | Pentatricopeptide repeat- | no | no | 0.957 | 0.762 | 0.364 | 9e-82 |
| >sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 332 bits (850), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 168/432 (38%), Positives = 253/432 (58%), Gaps = 6/432 (1%)
Query: 1 MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
MIRG+ ++ P+ S+ Y ML N YTFP L+KAC L E +HA + K
Sbjct: 86 MIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQ-IHAQITKL 144
Query: 61 GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
G+ D + V+SL+ Y++ A LFD+ P+ D V+W +++ GY K G + A LF
Sbjct: 145 GYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLF 204
Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
KM E+NA+SW+ +++ Y + KE L LF +MQ ++P+ L + L+ACA LGA+
Sbjct: 205 RKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALE 264
Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
QG W+HSY + + + +L ++DMY+KCG + AL VF+ I K AW A+ISG A
Sbjct: 265 QGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYA 324
Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
+G ++++ F M K G +P TF AVLT C++ +V +G +F +M Y ++P +
Sbjct: 325 YHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTI 384
Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
EHY C+VDLL RAG+++EA++FI+E +A +WGALL ACRI+ IE+G +
Sbjct: 385 EHYGCIVDLLGRAGLLDEAKRFIQEMP---LKPNAVIWGALLKACRIHKNIELGEEIGEI 441
Query: 361 LAEMGITDFSTHVLSYNIYK-EAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
L + +V NI+ + WD +A + R+L+ E G+ K PGCS I + G EFL
Sbjct: 442 LIAIDPYHGGRYVHKANIHAMDKKWD-KAAETRRLMKEQGVAKVPGCSTISLEGTTHEFL 500
Query: 420 AGDNRHAQAGEI 431
AGD H + +I
Sbjct: 501 AGDRSHPEIEKI 512
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SJZ3|PP169_ARATH Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 331 bits (848), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 159/438 (36%), Positives = 270/438 (61%), Gaps = 4/438 (0%)
Query: 1 MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
+I GY + + +++ Y M G +P++ T L+ +C +LG L N G + +V +
Sbjct: 228 LINGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDL-NRGKEFYEYVKEN 286
Query: 61 GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
G +V++L++ +S + AR +FD R +V+WTTM+ GY + G + +R+LF
Sbjct: 287 GLRMTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARCGLLDVSRKLF 346
Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
+ M E++ V W+A++ + ++ L+LF++MQ KP+E ++ L+AC+ LGA+
Sbjct: 347 DDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLGALD 406
Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
G+W+H Y ++Y L NV L T++VDMY+KCG++ ALSVF GI +++ + A+I G+A
Sbjct: 407 VGIWIHRYIEKYSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQTRNSLTYTAIIGGLA 466
Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
++GDA ++ F+ M+ +G P E TF+ +L+ C H M++ G + F M + + + PQL
Sbjct: 467 LHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQL 526
Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
+HY+ +VDLL RAG++EEA++ +E DA VWGALL CR++G +E+G + +K
Sbjct: 527 KHYSIMVDLLGRAGLLEEADRLMESMP---MEADAAVWGALLFGCRMHGNVELGEKAAKK 583
Query: 361 LAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLA 420
L E+ +D +VL +Y EA +A + R++++E G++K PGCS IEVNG+V EF+
Sbjct: 584 LLELDPSDSGIYVLLDGMYGEANMWEDAKRARRMMNERGVEKIPGCSSIEVNGIVCEFIV 643
Query: 421 GDNRHAQAGEIYRVIHSF 438
D ++ +IY +H
Sbjct: 644 RDKSRPESEKIYDRLHCL 661
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 325 bits (833), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 165/448 (36%), Positives = 277/448 (61%), Gaps = 21/448 (4%)
Query: 1 MIRGYMQANFPK--LSVFCYLDMLDMGF-EPNNYTFPPLIKACVILGPLENFGMFVHAHV 57
+IRG+ +++ K +++ + +M+ F EPN +TFP ++KAC G ++ G +H
Sbjct: 96 IIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQE-GKQIHGLA 154
Query: 58 VKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKS--------------PDRDVVTWTTM 103
+K+GFG D FV+S+L+ Y + M AR LF K+ D ++V W M
Sbjct: 155 LKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIVLWNVM 214
Query: 104 VDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNE 163
+DGY ++GD + AR LF+KM +R+ VSW+ +++ YS FK+ + +FR+M++ ++PN
Sbjct: 215 IDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNY 274
Query: 164 SGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEG 223
LVSVL A + LG++ G W+H YA+ + + +L +A++DMYSKCG + A+ VFE
Sbjct: 275 VTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFER 334
Query: 224 ISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDG 283
+ ++ W+AMI+G A++G A +++ F +M ++G +P++ ++ +LT C+H +V +G
Sbjct: 335 LPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEG 394
Query: 284 LNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLS 343
F M +V G+EP++EHY C+VDLL R+G+++EAE+FI + D +W ALL
Sbjct: 395 RRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFI---LNMPIKPDDVIWKALLG 451
Query: 344 ACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKK 403
ACR+ G +E+G RV L +M D +V N+Y G E +++R + E ++K
Sbjct: 452 ACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEKDIRKD 511
Query: 404 PGCSVIEVNGVVEEFLAGDNRHAQAGEI 431
PGCS+I+++GV+ EF+ D+ H +A EI
Sbjct: 512 PGCSLIDIDGVLHEFVVEDDSHPKAKEI 539
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FG16|PP367_ARATH Pentatricopeptide repeat-containing protein At5g06540 OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 322 bits (825), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 173/440 (39%), Positives = 266/440 (60%), Gaps = 17/440 (3%)
Query: 1 MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKA-----CVILGPLENFGMFVHA 55
+IR + P + Y ML P+N TFP LIKA CV++G H+
Sbjct: 88 LIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEMECVLVGEQ------THS 141
Query: 56 HVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFEN 115
+V+FGF D +V +SL+ Y+ + A +F + RDVV+WT+MV GY K G EN
Sbjct: 142 QIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVAGYCKCGMVEN 201
Query: 116 ARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH 175
ARE+F++MP RN +WS ++ Y++ + F++ + LF M+ G+ NE+ +VSV+++CAH
Sbjct: 202 AREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETVMVSVISSCAH 261
Query: 176 LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAM 235
LGA+ G + Y + H+ N+IL TA+VDM+ +CG + A+ VFEG+ D+ +W+++
Sbjct: 262 LGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGLPETDSLSWSSI 321
Query: 236 ISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG 295
I G+A++G A K++ F +M+ G P + TF AVL+ C+H +V GL ++ENM +G
Sbjct: 322 IKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGLEIYENMKKDHG 381
Query: 296 VEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGN 355
+EP+LEHY C+VD+L RAG + EAE FI + +A + GALL AC+IY EV
Sbjct: 382 IEPRLEHYGCIVDMLGRAGKLAEAENFI---LKMHVKPNAPILGALLGACKIYKNTEVAE 438
Query: 356 RVWRKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGV 414
RV L ++ +VL NIY AG WD + +R ++ E +KK PG S+IE++G
Sbjct: 439 RVGNMLIKVKPEHSGYYVLLSNIYACAGQWD-KIESLRDMMKEKLVKKPPGWSLIEIDGK 497
Query: 415 VEEFLAGDN-RHAQAGEIYR 433
+ +F GD+ +H + G+I R
Sbjct: 498 INKFTMGDDQKHPEMGKIRR 517
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FND7|PP410_ARATH Putative pentatricopeptide repeat-containing protein At5g40405 OS=Arabidopsis thaliana GN=PCMP-H14 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 318 bits (815), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 168/434 (38%), Positives = 258/434 (59%), Gaps = 8/434 (1%)
Query: 1 MIRGYMQANFPKLSVFCYLDMLDMG--FEPNNYTFPPLIKACVILGPLENFGMFVHAHVV 58
MIR + ++ P+ S Y +L G +P+NYT L++AC L E G+ VH +
Sbjct: 77 MIRAHCKSPVPEKSFDFYRRILSSGNDLKPDNYTVNFLVQACTGLRMRET-GLQVHGMTI 135
Query: 59 KFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE 118
+ GF DP V + L+ Y+ + + + +F+ P D V T MV + GD AR+
Sbjct: 136 RRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSIPCPDFVCRTAMVTACARCGDVVFARK 195
Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
LFE MPER+ ++W+A+++ Y+++ + +E L++F MQ G+K N ++SVL+AC LGA
Sbjct: 196 LFEGMPERDPIAWNAMISGYAQVGESREALNVFHLMQLEGVKVNGVAMISVLSACTQLGA 255
Query: 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
+ QG W HSY +R ++ V LAT +VD+Y+KCG + A+ VF G+ K+ W++ ++G
Sbjct: 256 LDQGRWAHSYIERNKIKITVRLATTLVDLYAKCGDMEKAMEVFWGMEEKNVYTWSSALNG 315
Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
+AMNG +K LELF M + G P TFV+VL C+ V +G F++M +G+EP
Sbjct: 316 LAMNGFGEKCLELFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQRHFDSMRNEFGIEP 375
Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358
QLEHY C+VDL ARAG +E+A I++ A VW +LL A R+Y +E+G
Sbjct: 376 QLEHYGCLVDLYARAGRLEDAVSIIQQMP---MKPHAAVWSSLLHASRMYKNLELGVLAS 432
Query: 359 RKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEE 417
+K+ E+ + +VL NIY ++ WD + VR+ + G++K+PGCSV+EVNG V E
Sbjct: 433 KKMLELETANHGAYVLLSNIYADSNDWD-NVSHVRQSMKSKGVRKQPGCSVMEVNGEVHE 491
Query: 418 FLAGDNRHAQAGEI 431
F GD H + +I
Sbjct: 492 FFVGDKSHPKYTQI 505
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q683I9|PP295_ARATH Pentatricopeptide repeat-containing protein At3g62890 OS=Arabidopsis thaliana GN=PCMP-H82 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 317 bits (811), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 162/431 (37%), Positives = 249/431 (57%), Gaps = 13/431 (3%)
Query: 18 YLDMLDMGFEPNNYTFPPLIKACVILGPLE-NFGMFVHAHVVKFGFGEDPFVVSSLLEFY 76
YL M + P+ +TFP L+ + PL G HA ++ FG +DPFV +SLL Y
Sbjct: 50 YLRMRNHRVSPDFHTFPFLLPS--FHNPLHLPLGQRTHAQILLFGLDKDPFVRTSLLNMY 107
Query: 77 SLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMA 136
S + +A+ +FD S +D+ W ++V+ Y K G ++AR+LF++MPERN +SWS ++
Sbjct: 108 SSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAGLIDDARKLFDEMPERNVISWSCLIN 167
Query: 137 AYSRISDFKEVLSLFRQMQ-----EVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKR 191
Y +KE L LFR+MQ E ++PNE + +VL+AC LGA+ QG WVH+Y +
Sbjct: 168 GYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRLGALEQGKWVHAYIDK 227
Query: 192 YHLEKNVILATAVVDMYSKCGHVHSALSVFEGI-SNKDAGAWNAMISGVAMNGDAKKSLE 250
YH+E +++L TA++DMY+KCG + A VF + S KD A++AMI +AM G + +
Sbjct: 228 YHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSKKDVKAYSAMICCLAMYGLTDECFQ 287
Query: 251 LFDRMVKS-GTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDL 309
LF M S P TFV +L C H ++ +G + F+ M +G+ P ++HY C+VDL
Sbjct: 288 LFSEMTTSDNINPNSVTFVGILGACVHRGLINEGKSYFKMMIEEFGITPSIQHYGCMVDL 347
Query: 310 LARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDF 369
R+G+++EAE FI D +WG+LLS R+ G I+ ++L E+ +
Sbjct: 348 YGRSGLIKEAESFIASMP---MEPDVLIWGSLLSGSRMLGDIKTCEGALKRLIELDPMNS 404
Query: 370 STHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAG 429
+VL N+Y + G ME +R + G+ K PGCS +EV GVV EF+ GD ++
Sbjct: 405 GAYVLLSNVYAKTGRWMEVKCIRHEMEVKGINKVPGCSYVEVEGVVHEFVVGDESQQESE 464
Query: 430 EIYRVIHSFLK 440
IY ++ ++
Sbjct: 465 RIYAMLDEIMQ 475
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SZT8|PP354_ARATH Pentatricopeptide repeat-containing protein At4g37380, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 315 bits (806), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 157/420 (37%), Positives = 250/420 (59%), Gaps = 10/420 (2%)
Query: 18 YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYS 77
Y+ +L PN +TF L+K+C G +H HV+KFG G DP+V + L++ Y+
Sbjct: 118 YVQLLSSEINPNEFTFSSLLKSCST-----KSGKLIHTHVLKFGLGIDPYVATGLVDVYA 172
Query: 78 LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAA 137
+ +A+ +FD+ P+R +V+ T M+ Y K G+ E AR LF+ M ER+ VSW+ ++
Sbjct: 173 KGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDG 232
Query: 138 YSRISDFKEVLSLFRQMQEVGM-KPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEK 196
Y++ + L LF+++ G KP+E +V+ L+AC+ +GA+ G W+H + K +
Sbjct: 233 YAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRL 292
Query: 197 NVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMV 256
NV + T ++DMYSKCG + A+ VF KD AWNAMI+G AM+G ++ +L LF+ M
Sbjct: 293 NVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQ 352
Query: 257 K-SGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGM 315
+G QPT+ TF+ L C HA +V +G+ +FE+M YG++P++EHY C+V LL RAG
Sbjct: 353 GITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQ 412
Query: 316 VEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLS 375
++ A + I+ D+ +W ++L +C+++G +G + L + I + +VL
Sbjct: 413 LKRAYETIKNMN---MDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIKNSGIYVLL 469
Query: 376 YNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVI 435
NIY G KVR L+ E G+ K+PG S IE+ V EF AGD H+++ EIY ++
Sbjct: 470 SNIYASVGDYEGVAKVRNLMKEKGIVKEPGISTIEIENKVHEFRAGDREHSKSKEIYTML 529
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SIL5|PP165_ARATH Pentatricopeptide repeat-containing protein At2g20540 OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 310 bits (794), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 158/439 (35%), Positives = 256/439 (58%), Gaps = 5/439 (1%)
Query: 1 MIRGYMQANFPKLSVFCYLDMLDMGFE-PNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
+IR Y + + Y +L FE P+ +TFP + K+C LG G VH H+ K
Sbjct: 79 IIRAYTHNSLYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCY-LGKQVHGHLCK 137
Query: 60 FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
FG ++L++ Y + A +FD+ +RDV++W +++ GY ++G + A+ L
Sbjct: 138 FGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMYERDVISWNSLLSGYARLGQMKKAKGL 197
Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
F M ++ VSW+A+++ Y+ I + E + FR+MQ G++P+E L+SVL +CA LG++
Sbjct: 198 FHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVLPSCAQLGSL 257
Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
G W+H YA+R K + A+++MYSKCG + A+ +F + KD +W+ MISG
Sbjct: 258 ELGKWIHLYAERRGFLKQTGVCNALIEMYSKCGVISQAIQLFGQMEGKDVISWSTMISGY 317
Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
A +G+A ++E F+ M ++ +P TF+ +L+ C+H M ++GL F+ M Y +EP+
Sbjct: 318 AYHGNAHGAIETFNEMQRAKVKPNGITFLGLLSACSHVGMWQEGLRYFDMMRQDYQIEPK 377
Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
+EHY C++D+LARAG +E A +E D+ +WG+LLS+CR G ++V
Sbjct: 378 IEHYGCLIDVLARAGKLERA---VEITKTMPMKPDSKIWGSLLSSCRTPGNLDVALVAMD 434
Query: 360 KLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
L E+ D +VL NIY + G + +++RK+I MKK PG S+IEVN +V+EF+
Sbjct: 435 HLVELEPEDMGNYVLLANIYADLGKWEDVSRLRKMIRNENMKKTPGGSLIEVNNIVQEFV 494
Query: 420 AGDNRHAQAGEIYRVIHSF 438
+GDN EI V+ F
Sbjct: 495 SGDNSKPFWTEISIVLQLF 513
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIF7|PP435_ARATH Putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E41 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 306 bits (783), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 159/441 (36%), Positives = 256/441 (58%), Gaps = 8/441 (1%)
Query: 1 MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
MI G++ + V Y M+ P+NY ++KAC + E +HA V+K
Sbjct: 98 MIDGFVSSGRSADGVSLYHRMIHNSVLPDNYVITSVLKACDLKVCRE-----IHAQVLKL 152
Query: 61 GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
GFG V ++E Y ++ A+ +FD+ PDRD V T M++ Y + G + A ELF
Sbjct: 153 GFGSSRSVGLKMMEIYGKSGELVNAKKMFDEMPDRDHVAATVMINCYSECGFIKEALELF 212
Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
+ + ++ V W+A++ R + + L LFR+MQ + NE V VL+AC+ LGA+
Sbjct: 213 QDVKIKDTVCWTAMIDGLVRNKEMNKALELFREMQMENVSANEFTAVCVLSACSDLGALE 272
Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
G WVHS+ + +E + + A+++MYS+CG ++ A VF + +KD ++N MISG+A
Sbjct: 273 LGRWVHSFVENQRMELSNFVGNALINMYSRCGDINEARRVFRVMRDKDVISYNTMISGLA 332
Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
M+G + +++ F MV G +P + T VA+L C+H ++ GL +F +M V+ VEPQ+
Sbjct: 333 MHGASVEAINEFRDMVNRGFRPNQVTLVALLNACSHGGLLDIGLEVFNSMKRVFNVEPQI 392
Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
EHY C+VDLL R G +EEA +FIE D + G LLSAC+I+G +E+G ++ ++
Sbjct: 393 EHYGCIVDLLGRVGRLEEAYRFIENIP---IEPDHIMLGTLLSACKIHGNMELGEKIAKR 449
Query: 361 LAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLA 420
L E D T+VL N+Y +G E+ ++R+ + ++G++K+PGCS IEV+ + EFL
Sbjct: 450 LFESENPDSGTYVLLSNLYASSGKWKESTEIRESMRDSGIEKEPGCSTIEVDNQIHEFLV 509
Query: 421 GDNRHAQAGEIYRVIHSFLKM 441
GD H IY+ + ++
Sbjct: 510 GDIAHPHKEAIYQRLQELNRI 530
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SJG6|PP200_ARATH Pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E75 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 304 bits (779), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 161/442 (36%), Positives = 254/442 (57%), Gaps = 16/442 (3%)
Query: 1 MIRGYMQANFPKLSVFCYLDML--DMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVV 58
+IRG+ +++FP++++ ++DML +P T+P + KA LG + G +H V+
Sbjct: 95 IIRGFSRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSVFKAYGRLGQARD-GRQLHGMVI 153
Query: 59 KFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE 118
K G +D F+ +++L Y + A +F DVV W +M+ G+ K G + A+
Sbjct: 154 KEGLEDDSFIRNTMLHMYVTCGCLIEAWRIFLGMIGFDVVAWNSMIMGFAKCGLIDQAQN 213
Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
LF++MP+RN VSW+++++ + R FK+ L +FR+MQE +KP+ +VS+L ACA+LGA
Sbjct: 214 LFDEMPQRNGVSWNSMISGFVRNGRFKDALDMFREMQEKDVKPDGFTMVSLLNACAYLGA 273
Query: 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
QG W+H Y R E N I+ TA++DMY KCG + L+VFE K WN+MI G
Sbjct: 274 SEQGRWIHEYIVRNRFELNSIVVTALIDMYCKCGCIEEGLNVFECAPKKQLSCWNSMILG 333
Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
+A NG +++++LF + +SG +P +F+ VLT C H+ V F M Y +EP
Sbjct: 334 LANNGFEERAMDLFSELERSGLEPDSVSFIGVLTACAHSGEVHRADEFFRLMKEKYMIEP 393
Query: 299 QLEHYACVVDLLARAGMVEEAEKFI-----EEKMGGLGGGDANVWGALLSACRIYGKIEV 353
++HY +V++L AG++EEAE I EE D +W +LLSACR G +E+
Sbjct: 394 SIKHYTLMVNVLGGAGLLEEAEALIKNMPVEE--------DTVIWSSLLSACRKIGNVEM 445
Query: 354 GNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNG 413
R + L ++ + +VL N Y G EA + R L+ E M+K+ GCS IEV+
Sbjct: 446 AKRAAKCLKKLDPDETCGYVLLSNAYASYGLFEEAVEQRLLMKERQMEKEVGCSSIEVDF 505
Query: 414 VVEEFLAGDNRHAQAGEIYRVI 435
V EF++ H ++ EIY ++
Sbjct: 506 EVHEFISCGGTHPKSAEIYSLL 527
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 445 | ||||||
| 225445484 | 533 | PREDICTED: pentatricopeptide repeat-cont | 0.997 | 0.833 | 0.723 | 0.0 | |
| 147810325 | 805 | hypothetical protein VITISV_026273 [Viti | 0.997 | 0.551 | 0.723 | 0.0 | |
| 356514477 | 526 | PREDICTED: pentatricopeptide repeat-cont | 0.997 | 0.844 | 0.691 | 0.0 | |
| 449469438 | 528 | PREDICTED: pentatricopeptide repeat-cont | 0.988 | 0.833 | 0.647 | 1e-169 | |
| 449527549 | 487 | PREDICTED: pentatricopeptide repeat-cont | 0.901 | 0.823 | 0.662 | 1e-158 | |
| 225466196 | 537 | PREDICTED: pentatricopeptide repeat-cont | 0.959 | 0.795 | 0.438 | 1e-103 | |
| 296085795 | 512 | unnamed protein product [Vitis vinifera] | 0.959 | 0.833 | 0.438 | 1e-102 | |
| 227462996 | 532 | pentatricopeptide repeat protein [Gossyp | 0.961 | 0.804 | 0.422 | 5e-99 | |
| 225425100 | 622 | PREDICTED: pentatricopeptide repeat-cont | 0.979 | 0.700 | 0.409 | 5e-99 | |
| 147832325 | 622 | hypothetical protein VITISV_030261 [Viti | 0.979 | 0.700 | 0.406 | 3e-98 |
| >gi|225445484|ref|XP_002282063.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 687 bits (1774), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/445 (72%), Positives = 371/445 (83%), Gaps = 1/445 (0%)
Query: 1 MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENF-GMFVHAHVVK 59
MIRGY+ ++ P ++ CYLDML+ G NNYTFPPLIKAC LG G VHAHVV
Sbjct: 83 MIRGYVLSHSPTRAILCYLDMLNYGLLANNYTFPPLIKACTTLGSSSKLIGCLVHAHVVT 142
Query: 60 FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
FGF EDPFVVS+L+EFYSL MGTAR LFD+ P+RDVV WT M+DGYGKMGD E+AR L
Sbjct: 143 FGFDEDPFVVSALIEFYSLNFDMGTARTLFDRIPNRDVVLWTAMIDGYGKMGDVEHARIL 202
Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
FE MPERNA+SWSA+MAAYSR+ DFKEVL LFR+MQE G PNES LVSVLTACAHLGA+
Sbjct: 203 FEDMPERNAISWSAVMAAYSRVGDFKEVLCLFRRMQEAGTMPNESVLVSVLTACAHLGAL 262
Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
QGLWVHSYAK+ + + N ILATA+VDMYSKCG V SALS F+GI NKDAGAWNAMISGV
Sbjct: 263 AQGLWVHSYAKQCNFDSNPILATALVDMYSKCGCVESALSTFQGIPNKDAGAWNAMISGV 322
Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
AMNGDA KSLELF++M+ +GTQPTETTFVAVLT CTHA++V++GL LFE MS+ YGVEPQ
Sbjct: 323 AMNGDAWKSLELFNKMISNGTQPTETTFVAVLTACTHARLVKEGLKLFEQMSSNYGVEPQ 382
Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
LEHYAC+VDL+ARAGM+ EAEKFIEEKMGGLG GDANVWGA+L ACR YG IEVGNRVW+
Sbjct: 383 LEHYACLVDLMARAGMLAEAEKFIEEKMGGLGRGDANVWGAMLGACRTYGNIEVGNRVWK 442
Query: 360 KLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
KLA+MG+ D THVLSYN+Y+EAGWDMEA +VR+LISE GMKKKPGCS+IEV+G VEEFL
Sbjct: 443 KLADMGVADCGTHVLSYNLYREAGWDMEAKRVRRLISEAGMKKKPGCSIIEVDGTVEEFL 502
Query: 420 AGDNRHAQAGEIYRVIHSFLKMSNL 444
AGD H+QA +I + + S + L
Sbjct: 503 AGDLSHSQAPQICKTLDSLSNIGRL 527
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147810325|emb|CAN65024.1| hypothetical protein VITISV_026273 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 682 bits (1761), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/445 (72%), Positives = 369/445 (82%), Gaps = 1/445 (0%)
Query: 1 MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENF-GMFVHAHVVK 59
MIRGY+ ++ P ++ CYLDML+ G NNYTFPPLIKAC LG G VHAHVV
Sbjct: 355 MIRGYVLSHSPTRAILCYLDMLNYGLLANNYTFPPLIKACTTLGSSSKLIGCLVHAHVVT 414
Query: 60 FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
FGF EDPFVVS+L+EFYSL MGTAR LFD+ P+RDVV WT M+DGYGKMGD E+AR L
Sbjct: 415 FGFDEDPFVVSALIEFYSLNFDMGTARTLFDRIPNRDVVLWTAMIDGYGKMGDVEHARIL 474
Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
FE MPERNA+SWSA+MAAYSR+ DFKEVL LFR+MQE G PNES LVSVLTACAHLGA+
Sbjct: 475 FEDMPERNAISWSAVMAAYSRVGDFKEVLCLFRRMQEAGTMPNESVLVSVLTACAHLGAL 534
Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
QGLWVHSYAK+ + + N ILATA+VDMYSKCG V SALS F+GI NKDAGAWNAMISGV
Sbjct: 535 AQGLWVHSYAKQCNFDSNPILATALVDMYSKCGCVESALSTFQGIPNKDAGAWNAMISGV 594
Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
AMNGDA KSLELF++M+ +GTQPTETTFVAVLT CTHA++VR+GL LFE MS+ YGVEPQ
Sbjct: 595 AMNGDAWKSLELFNKMISNGTQPTETTFVAVLTACTHARLVREGLKLFEQMSSNYGVEPQ 654
Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
EHYAC+VDL+ARAGM+ EAEKFIEEKMGGLG GDANVWGA L ACR YG IEVGNRVW+
Sbjct: 655 XEHYACLVDLMARAGMLAEAEKFIEEKMGGLGRGDANVWGAXLGACRTYGNIEVGNRVWK 714
Query: 360 KLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
KLA+MG+ D THVLSYN+Y+EAGWDMEA +VR+LISE GMKKKPGCS+IEV+G VEEFL
Sbjct: 715 KLADMGVADCGTHVLSYNLYREAGWDMEAKRVRRLISEXGMKKKPGCSIIEVDGTVEEFL 774
Query: 420 AGDNRHAQAGEIYRVIHSFLKMSNL 444
AGD H+QA +I + + S + L
Sbjct: 775 AGDLSHSQAPQICKTLDSLXNIGXL 799
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356514477|ref|XP_003525932.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 646 bits (1666), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 309/447 (69%), Positives = 364/447 (81%), Gaps = 3/447 (0%)
Query: 1 MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVIL---GPLENFGMFVHAHV 57
MIRGY+Q P +V CYL ML G NNYTFPPLIKAC+ L P G VH HV
Sbjct: 77 MIRGYLQCRSPLHAVSCYLSMLQNGVAVNNYTFPPLIKACIALLPSSPSNIVGRLVHGHV 136
Query: 58 VKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAR 117
VKFG DP+VVS+ +EFYS+ ++ TAR LFD++ +DVV T MVDGYGKMG+ ++AR
Sbjct: 137 VKFGLRNDPYVVSAFIEFYSVSREVDTARVLFDETSYKDVVLGTAMVDGYGKMGNVKSAR 196
Query: 118 ELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLG 177
E+F+KMPERNAVSWSA+MAAYSR+SDFKEVL+LF +MQ G +PNES LV+VLTACAHLG
Sbjct: 197 EVFDKMPERNAVSWSAMMAAYSRVSDFKEVLALFTEMQNEGTEPNESILVTVLTACAHLG 256
Query: 178 AITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMIS 237
A+TQGLWVHSYA+R+HLE N ILATA+VDMYSKCG V SALSVF+ I +KDAGAWNAMIS
Sbjct: 257 ALTQGLWVHSYARRFHLESNPILATALVDMYSKCGCVESALSVFDCIVDKDAGAWNAMIS 316
Query: 238 GVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVE 297
G A+NGDA KSL+LF +M S T+P ETTFVAVLT CTHAKMV+ GL LFE MS+VYGV
Sbjct: 317 GEALNGDAGKSLQLFRQMAASRTKPNETTFVAVLTACTHAKMVQQGLWLFEEMSSVYGVV 376
Query: 298 PQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRV 357
P++EHYACV+DLL+RAGMVEEAEKF+EEKMGGL GDANVWGALL+ACRI+ I VGNRV
Sbjct: 377 PRMEHYACVIDLLSRAGMVEEAEKFMEEKMGGLTAGDANVWGALLNACRIHKNIHVGNRV 436
Query: 358 WRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEE 417
W+KL +MG+TD THVL+YNIY+EAGWD+EANKVR I E GMKKKPGCS+IEV+ VEE
Sbjct: 437 WKKLVDMGVTDCGTHVLTYNIYREAGWDVEANKVRSRIEEVGMKKKPGCSIIEVDNEVEE 496
Query: 418 FLAGDNRHAQAGEIYRVIHSFLKMSNL 444
FLAGD+ H QA E+ +++ S LKM L
Sbjct: 497 FLAGDHSHPQAQEMCKLLDSILKMGTL 523
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449469438|ref|XP_004152427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 600 bits (1546), Expect = e-169, Method: Compositional matrix adjust.
Identities = 286/442 (64%), Positives = 341/442 (77%), Gaps = 2/442 (0%)
Query: 1 MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKAC-VILGPLENFGMFVHAHVVK 59
MIRGY + FPK ++ CYLD++D GF N YTFPPLIKAC ++ L+ G VHAHV+
Sbjct: 81 MIRGYFLSRFPKQAILCYLDLMDRGFLANKYTFPPLIKACALVYRELKRIGYLVHAHVIV 140
Query: 60 FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
G+ D FVVS+L+EFYSL + AR LFDKS +DVV WT MVDGYGK+GD E+AR L
Sbjct: 141 LGYENDAFVVSALVEFYSLF-DLKVARVLFDKSSGKDVVVWTVMVDGYGKVGDIESARVL 199
Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
F++MPERN +SWSA+MAAYSR+SDF+EVL LFRQMQ+ + PN+S + SVLTACAHLGAI
Sbjct: 200 FDEMPERNVISWSAMMAAYSRVSDFREVLCLFRQMQKKNIVPNDSVIASVLTACAHLGAI 259
Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
TQGLW+HSYAKRY L+ N ILATA+VDMYSKCG++ SAL VFEGISNKDAGAWNAMISG
Sbjct: 260 TQGLWMHSYAKRYGLDSNPILATALVDMYSKCGYIESALEVFEGISNKDAGAWNAMISGF 319
Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
AM G+ KSLELFD+M+ SGTQ TE TFV++L CTHAKMV GL F+ M VY V+PQ
Sbjct: 320 AMTGNVVKSLELFDKMIASGTQATEATFVSILAACTHAKMVERGLEFFDQMYPVYRVQPQ 379
Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
EHYACVVDL+ARAGMVE+AEKF+EEKMGG DANVWGA+LSACR Y IE+G+R+W
Sbjct: 380 FEHYACVVDLMARAGMVEDAEKFVEEKMGGFSNVDANVWGAILSACRQYRNIEIGDRIWT 439
Query: 360 KLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
KL+ +G+ D T VLSYNI+ EAG +M A +VRK SE KK PGCSVI V+G V+EFL
Sbjct: 440 KLSALGLLDGGTQVLSYNIFSEAGREMAAKEVRKKFSEARSKKIPGCSVIVVDGAVQEFL 499
Query: 420 AGDNRHAQAGEIYRVIHSFLKM 441
AGD H Q I ++ KM
Sbjct: 500 AGDLSHPQVQHICEMLGFLSKM 521
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449527549|ref|XP_004170773.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 565 bits (1457), Expect = e-158, Method: Compositional matrix adjust.
Identities = 267/403 (66%), Positives = 318/403 (78%), Gaps = 2/403 (0%)
Query: 1 MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKAC-VILGPLENFGMFVHAHVVK 59
MIRGY + FPK ++ CYLD++D GF N YTFPPLIKAC ++ L+ G VHAHV+
Sbjct: 81 MIRGYFLSRFPKQAILCYLDLMDRGFLANKYTFPPLIKACALVYRELKRIGYLVHAHVIV 140
Query: 60 FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
G+ D FVVS+L+EFYSL + AR LFDKS +DVV WT MVDGYGK+GD E+AR L
Sbjct: 141 LGYENDAFVVSALVEFYSLF-DLKVARVLFDKSSGKDVVVWTVMVDGYGKVGDIESARVL 199
Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
F++MPERN +SWSA+MAAYSR+SDF+EVL LFRQMQ+ + PN+S +VSVLTACAHLGAI
Sbjct: 200 FDEMPERNVISWSAMMAAYSRVSDFREVLCLFRQMQKKNIVPNDSVIVSVLTACAHLGAI 259
Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
TQGLW+HSYAKRY L+ N ILATA+VDMYSKCG++ SAL VFEGISNKDAGAWNAMISG
Sbjct: 260 TQGLWMHSYAKRYGLDSNPILATALVDMYSKCGYIESALEVFEGISNKDAGAWNAMISGF 319
Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
AM G+ KSLELFD+M+ SGTQ TE TFV++L CTHAKMV GL F+ M VY V+PQ
Sbjct: 320 AMTGNVVKSLELFDKMIASGTQATEATFVSILAACTHAKMVERGLEFFDQMYPVYRVQPQ 379
Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
EHYACVVDL+ARAGMVE+AEKF+EEKMGG DANVWGA+LSACR Y IE+G+R+W
Sbjct: 380 FEHYACVVDLMARAGMVEDAEKFVEEKMGGFSNVDANVWGAILSACRQYRNIEIGDRIWT 439
Query: 360 KLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKK 402
KL+ +G+ D T VLSYNI+ EAG +M A +VRK SE KK
Sbjct: 440 KLSALGLLDGGTQVLSYNIFSEAGREMAAKEVRKKFSEARSKK 482
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225466196|ref|XP_002265420.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust.
Identities = 189/431 (43%), Positives = 274/431 (63%), Gaps = 4/431 (0%)
Query: 1 MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
M+R + P + Y ML GF PNNYTF L++AC L L +FG+ +HA V+
Sbjct: 84 MLRAFTDKKEPATVLSLYKYMLSTGFLPNNYTFSFLLQACAQLSDL-SFGILLHAQAVRL 142
Query: 61 GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
G+ FV + LL Y+ + M +AR LFD S +RDVVTWT +++GY K G AR+LF
Sbjct: 143 GWEAYDFVQNGLLHLYASCNCMDSARRLFDGSVNRDVVTWTAVINGYAKSGQVVVARQLF 202
Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
++MPE+NAVSWSA++ Y++I F+E L LF MQ G +PN +V LTACA LGA+
Sbjct: 203 DEMPEKNAVSWSAMITGYAQIGLFREALELFNDMQIAGFRPNHGAIVGALTACAFLGALD 262
Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
QG W+H+Y R + + IL TA++DMY+KCG V +A VF+ + ++D A+ ++ISG+A
Sbjct: 263 QGRWIHAYVDRNRMVLDRILGTALIDMYAKCGCVETACRVFDEMLDRDVFAFTSLISGLA 322
Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
+G + ++E+F RM G P E TF+ +L+ C+ +V +GL +F++M+ +YG+EP +
Sbjct: 323 NHGHSATAIEMFTRMQNEGVCPNEVTFICLLSACSRVGLVEEGLRIFKSMTNIYGIEPVV 382
Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
+HY C+VDLL RAGM+E+A++ + E D+ V GALL+ACR++G +E+G
Sbjct: 383 QHYGCLVDLLGRAGMLEDAKRVVREMP---LEPDSYVLGALLNACRVHGDVELGKETVEC 439
Query: 361 LAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLA 420
LAE + HVL N+Y A + KVRK + E +KK PGCS+IEV+G V EF+A
Sbjct: 440 LAERSLDHGGVHVLLSNMYASANQWEDVAKVRKGMEEKKVKKVPGCSLIEVDGAVFEFVA 499
Query: 421 GDNRHAQAGEI 431
GD H EI
Sbjct: 500 GDMSHVFMDEI 510
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296085795|emb|CBI31119.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 380 bits (975), Expect = e-102, Method: Compositional matrix adjust.
Identities = 189/431 (43%), Positives = 274/431 (63%), Gaps = 4/431 (0%)
Query: 1 MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
M+R + P + Y ML GF PNNYTF L++AC L L +FG+ +HA V+
Sbjct: 59 MLRAFTDKKEPATVLSLYKYMLSTGFLPNNYTFSFLLQACAQLSDL-SFGILLHAQAVRL 117
Query: 61 GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
G+ FV + LL Y+ + M +AR LFD S +RDVVTWT +++GY K G AR+LF
Sbjct: 118 GWEAYDFVQNGLLHLYASCNCMDSARRLFDGSVNRDVVTWTAVINGYAKSGQVVVARQLF 177
Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
++MPE+NAVSWSA++ Y++I F+E L LF MQ G +PN +V LTACA LGA+
Sbjct: 178 DEMPEKNAVSWSAMITGYAQIGLFREALELFNDMQIAGFRPNHGAIVGALTACAFLGALD 237
Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
QG W+H+Y R + + IL TA++DMY+KCG V +A VF+ + ++D A+ ++ISG+A
Sbjct: 238 QGRWIHAYVDRNRMVLDRILGTALIDMYAKCGCVETACRVFDEMLDRDVFAFTSLISGLA 297
Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
+G + ++E+F RM G P E TF+ +L+ C+ +V +GL +F++M+ +YG+EP +
Sbjct: 298 NHGHSATAIEMFTRMQNEGVCPNEVTFICLLSACSRVGLVEEGLRIFKSMTNIYGIEPVV 357
Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
+HY C+VDLL RAGM+E+A++ + E D+ V GALL+ACR++G +E+G
Sbjct: 358 QHYGCLVDLLGRAGMLEDAKRVVREMP---LEPDSYVLGALLNACRVHGDVELGKETVEC 414
Query: 361 LAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLA 420
LAE + HVL N+Y A + KVRK + E +KK PGCS+IEV+G V EF+A
Sbjct: 415 LAERSLDHGGVHVLLSNMYASANQWEDVAKVRKGMEEKKVKKVPGCSLIEVDGAVFEFVA 474
Query: 421 GDNRHAQAGEI 431
GD H EI
Sbjct: 475 GDMSHVFMDEI 485
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|227462996|gb|ACP39950.1| pentatricopeptide repeat protein [Gossypium hirsutum] gi|227462998|gb|ACP39951.1| pentatricopeptide repeat protein [Gossypium hirsutum] | Back alignment and taxonomy information |
|---|
Score = 367 bits (943), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 184/436 (42%), Positives = 275/436 (63%), Gaps = 8/436 (1%)
Query: 1 MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
+IR +++ N ++ Y +ML GF PNNYTF +++AC P+ G+ HA V+K
Sbjct: 81 IIRIFVEKNENATALSLYKNMLQTGFLPNNYTFSFVLRACTDNSPV---GLASHAQVIKL 137
Query: 61 GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
G+ FV++ L+ Y+ + AR LFD S RDV+TWT +++GY K G E ARELF
Sbjct: 138 GWESYDFVLNGLIHLYANWSSVEAARKLFDVSTCRDVITWTALINGYVKSGHVEFARELF 197
Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
++MPERN VSWSA++ Y + F+E L LF +Q G++PN +G+V LTAC++LG++
Sbjct: 198 DQMPERNEVSWSAMITGYVHMGMFREALELFNDLQLTGLRPNHAGIVGALTACSYLGSLD 257
Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
G W+H+Y R E + +L TA+VDMY+KCG + A SVFE + +KDA A+ ++ISG+A
Sbjct: 258 HGRWIHAYVDRNGTELDRVLGTALVDMYAKCGCIEIACSVFEKMPDKDAFAFTSLISGLA 317
Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
+G + +++LF RM P E TF+ VL+ C+ +V +GL +F MS VYG+EP +
Sbjct: 318 NHGQSADAIQLFGRMQSEKVIPNEVTFICVLSACSRMGLVDEGLRIFNCMSVVYGIEPGV 377
Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
+HY C+VDLL RAG++EEA++ + E D+ V GALL++CR++G +E+G
Sbjct: 378 QHYGCMVDLLGRAGLLEEAKRLVREMP---MEPDSYVLGALLNSCRVHGDVELGKETVES 434
Query: 361 LAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
L E G+ HVL N+Y + WD KVRK + +KK PGCS IE++G V EF+
Sbjct: 435 LVERGLDHGGVHVLLSNMYASSNQWDWVV-KVRKEMGAKKVKKVPGCSSIEIDGSVSEFI 493
Query: 420 AGDNRHAQAGEIYRVI 435
AGD + + ++ V+
Sbjct: 494 AGDMSYLRVEDVMLVL 509
|
Source: Gossypium hirsutum Species: Gossypium hirsutum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 367 bits (943), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 180/440 (40%), Positives = 270/440 (61%), Gaps = 4/440 (0%)
Query: 1 MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
MIRGY + P+ ++ Y ML N YTFP L+KAC + LE +HAH++K
Sbjct: 89 MIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQ-IHAHIIKM 147
Query: 61 GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
GFG + + +SLL YS + +AR LFD+ RD V+W +M+DGY K G+ E A E+F
Sbjct: 148 GFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIF 207
Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
MPERN +SW+++++ KE L+LF +MQ G+K + LVS L ACA LG +
Sbjct: 208 NHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLD 267
Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
QG W+H+Y K++ +E + IL ++DMY+KCG + A+ VF + K W AMISG A
Sbjct: 268 QGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYA 327
Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
++G +++LE F +M +G +P + TF +LT C+HA +V + LFE+M ++G +P +
Sbjct: 328 IHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSI 387
Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
EHY C+VDLL RAG+++EAE+ IE +A +WGALL+AC I+G +E+G ++ +
Sbjct: 388 EHYGCMVDLLGRAGLLKEAEELIENMP---VKPNAAIWGALLNACHIHGNLELGKQIGKI 444
Query: 361 LAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLA 420
L ++ ++ +I+ AG +A +VR+ + E G+ K PGCSVI VNG EFLA
Sbjct: 445 LIQVDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVNGTAHEFLA 504
Query: 421 GDNRHAQAGEIYRVIHSFLK 440
GD H Q EI ++ ++
Sbjct: 505 GDESHPQIKEIDHMLEQIVE 524
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 365 bits (937), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 179/440 (40%), Positives = 269/440 (61%), Gaps = 4/440 (0%)
Query: 1 MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
MIRGY + P+ ++ Y ML N YTFP L+KAC + E +HAH++K
Sbjct: 89 MIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSASEETQQ-IHAHIIKM 147
Query: 61 GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
GFG + + +SLL YS + +AR LFD+ RD V+W +M+DGY K G+ E A E+F
Sbjct: 148 GFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIF 207
Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
MPERN +SW+++++ KE L+LF +MQ G+K + LVS L ACA LG +
Sbjct: 208 NHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLD 267
Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
QG W+H+Y K++ +E + IL ++DMY+KCG + A+ VF + K W AMISG A
Sbjct: 268 QGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYA 327
Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
++G +++LE F +M +G +P + TF +LT C+HA +V + LFE+M ++G +P +
Sbjct: 328 IHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSI 387
Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
EHY C+VDLL RAG+++EAE+ IE +A +WGALL+AC I+G +E+G ++ +
Sbjct: 388 EHYGCMVDLLGRAGLLKEAEELIENMP---VKPNAAIWGALLNACHIHGNLELGKQIGKI 444
Query: 361 LAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLA 420
L ++ ++ +I+ AG +A +VR+ + E G+ K PGCSVI VNG EFLA
Sbjct: 445 LIQVDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVNGTAHEFLA 504
Query: 421 GDNRHAQAGEIYRVIHSFLK 440
GD H Q EI ++ ++
Sbjct: 505 GDESHPQIKEIDHMLEQIVE 524
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 445 | ||||||
| TAIR|locus:2154855 | 620 | AT5G66520 "AT5G66520" [Arabido | 0.988 | 0.709 | 0.383 | 1.3e-84 | |
| TAIR|locus:2041198 | 681 | SLO1 "SLOW GROWTH 1" [Arabidop | 0.968 | 0.632 | 0.366 | 5e-83 | |
| TAIR|locus:2144143 | 622 | AT5G06540 [Arabidopsis thalian | 0.977 | 0.699 | 0.393 | 5.8e-82 | |
| TAIR|locus:2154389 | 646 | LPA66 "LOW PSII ACCUMULATION 6 | 0.957 | 0.659 | 0.371 | 1.2e-81 | |
| TAIR|locus:1009023396 | 612 | AT5G40405 "AT5G40405" [Arabido | 0.957 | 0.696 | 0.387 | 2.2e-80 | |
| TAIR|locus:2126352 | 632 | AT4G37380 [Arabidopsis thalian | 0.919 | 0.647 | 0.380 | 6e-80 | |
| TAIR|locus:2081635 | 573 | AT3G62890 [Arabidopsis thalian | 0.939 | 0.729 | 0.375 | 4.2e-79 | |
| TAIR|locus:2060640 | 738 | OTP81 "ORGANELLE TRANSCRIPT PR | 0.977 | 0.589 | 0.348 | 1.4e-78 | |
| TAIR|locus:2054789 | 534 | MEF21 "mitochondrial editing f | 0.973 | 0.810 | 0.363 | 3e-78 | |
| TAIR|locus:2045580 | 559 | AT2G42920 [Arabidopsis thalian | 0.968 | 0.771 | 0.363 | 1.5e-76 |
| TAIR|locus:2154855 AT5G66520 "AT5G66520" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 847 (303.2 bits), Expect = 1.3e-84, P = 1.3e-84
Identities = 172/449 (38%), Positives = 262/449 (58%)
Query: 1 MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
MIRG+ ++ P+ S+ Y ML N YTFP L+KAC L E +HA + K
Sbjct: 86 MIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQ-IHAQITKL 144
Query: 61 GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
G+ D + V+SL+ Y++ A LFD+ P+ D V+W +++ GY K G + A LF
Sbjct: 145 GYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLF 204
Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
KM E+NA+SW+ +++ Y + KE L LF +MQ ++P+ L + L+ACA LGA+
Sbjct: 205 RKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALE 264
Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
QG W+HSY + + + +L ++DMY+KCG + AL VF+ I K AW A+ISG A
Sbjct: 265 QGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYA 324
Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
+G ++++ F M K G +P TF AVLT C++ +V +G +F +M Y ++P +
Sbjct: 325 YHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTI 384
Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
EHY C+VDLL RAG+++EA++FI+E L +A +WGALL ACRI+ IE+G +
Sbjct: 385 EHYGCIVDLLGRAGLLDEAKRFIQEMP--LKP-NAVIWGALLKACRIHKNIELGEEIGEI 441
Query: 361 LAEMGITDFSTHVLSYNIYK-EAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
L + +V NI+ + WD +A + R+L+ E G+ K PGCS I + G EFL
Sbjct: 442 LIAIDPYHGGRYVHKANIHAMDKKWD-KAAETRRLMKEQGVAKVPGCSTISLEGTTHEFL 500
Query: 420 AGDNRHAQAGEI---YRVIHSFLKMSNLV 445
AGD H + +I +R++ L+ + V
Sbjct: 501 AGDRSHPEIEKIQSKWRIMRRKLEENGYV 529
|
|
| TAIR|locus:2041198 SLO1 "SLOW GROWTH 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 832 (297.9 bits), Expect = 5.0e-83, P = 5.0e-83
Identities = 160/437 (36%), Positives = 272/437 (62%)
Query: 1 MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
+I GY + + +++ Y M G +P++ T L+ +C +LG L N G + +V +
Sbjct: 228 LINGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDL-NRGKEFYEYVKEN 286
Query: 61 GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
G +V++L++ +S + AR +FD R +V+WTTM+ GY + G + +R+LF
Sbjct: 287 GLRMTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARCGLLDVSRKLF 346
Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
+ M E++ V W+A++ + ++ L+LF++MQ KP+E ++ L+AC+ LGA+
Sbjct: 347 DDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLGALD 406
Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
G+W+H Y ++Y L NV L T++VDMY+KCG++ ALSVF GI +++ + A+I G+A
Sbjct: 407 VGIWIHRYIEKYSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQTRNSLTYTAIIGGLA 466
Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
++GDA ++ F+ M+ +G P E TF+ +L+ C H M++ G + F M + + + PQL
Sbjct: 467 LHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQL 526
Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
+HY+ +VDLL RAG++EEA++ +E DA VWGALL CR++G +E+G + +K
Sbjct: 527 KHYSIMVDLLGRAGLLEEADRLMESMPME---ADAAVWGALLFGCRMHGNVELGEKAAKK 583
Query: 361 LAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
L E+ +D +VL +Y EA W+ +A + R++++E G++K PGCS IEVNG+V EF+
Sbjct: 584 LLELDPSDSGIYVLLDGMYGEANMWE-DAKRARRMMNERGVEKIPGCSSIEVNGIVCEFI 642
Query: 420 AGDNRHAQAGEIYRVIH 436
D ++ +IY +H
Sbjct: 643 VRDKSRPESEKIYDRLH 659
|
|
| TAIR|locus:2144143 AT5G06540 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 822 (294.4 bits), Expect = 5.8e-82, P = 5.8e-82
Identities = 178/452 (39%), Positives = 271/452 (59%)
Query: 1 MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKA-----CVILGPLENFGMFVHA 55
+IR + P + Y ML P+N TFP LIKA CV++G E H+
Sbjct: 88 LIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEMECVLVG--EQ----THS 141
Query: 56 HVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFEN 115
+V+FGF D +V +SL+ Y+ + A +F + RDVV+WT+MV GY K G EN
Sbjct: 142 QIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVAGYCKCGMVEN 201
Query: 116 ARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH 175
ARE+F++MP RN +WS ++ Y++ + F++ + LF M+ G+ NE+ +VSV+++CAH
Sbjct: 202 AREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETVMVSVISSCAH 261
Query: 176 LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAM 235
LGA+ G + Y + H+ N+IL TA+VDM+ +CG + A+ VFEG+ D+ +W+++
Sbjct: 262 LGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGLPETDSLSWSSI 321
Query: 236 ISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG 295
I G+A++G A K++ F +M+ G P + TF AVL+ C+H +V GL ++ENM +G
Sbjct: 322 IKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGLEIYENMKKDHG 381
Query: 296 VEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGN 355
+EP+LEHY C+VD+L RAG + EAE FI KM +A + GALL AC+IY EV
Sbjct: 382 IEPRLEHYGCIVDMLGRAGKLAEAENFIL-KMHVKP--NAPILGALLGACKIYKNTEVAE 438
Query: 356 RVWRKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGV 414
RV L ++ +VL NIY AG WD + +R ++ E +KK PG S+IE++G
Sbjct: 439 RVGNMLIKVKPEHSGYYVLLSNIYACAGQWD-KIESLRDMMKEKLVKKPPGWSLIEIDGK 497
Query: 415 VEEFLAGDN-RHAQAGEIYRVIHSFLKMSNLV 445
+ +F GD+ +H + G+I R L L+
Sbjct: 498 INKFTMGDDQKHPEMGKIRRKWEEILGKIRLI 529
|
|
| TAIR|locus:2154389 LPA66 "LOW PSII ACCUMULATION 66" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 819 (293.4 bits), Expect = 1.2e-81, P = 1.2e-81
Identities = 167/449 (37%), Positives = 279/449 (62%)
Query: 1 MIRGYMQANFPK--LSVFCYLDMLDMGF-EPNNYTFPPLIKACVILGPLENFGMFVHAHV 57
+IRG+ +++ K +++ + +M+ F EPN +TFP ++KAC G ++ G +H
Sbjct: 96 IIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQE-GKQIHGLA 154
Query: 58 VKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKS---------PDR-----DVVTWTTM 103
+K+GFG D FV+S+L+ Y + M AR LF K+ DR ++V W M
Sbjct: 155 LKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIVLWNVM 214
Query: 104 VDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNE 163
+DGY ++GD + AR LF+KM +R+ VSW+ +++ YS FK+ + +FR+M++ ++PN
Sbjct: 215 IDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNY 274
Query: 164 SGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEG 223
LVSVL A + LG++ G W+H YA+ + + +L +A++DMYSKCG + A+ VFE
Sbjct: 275 VTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFER 334
Query: 224 ISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDG 283
+ ++ W+AMI+G A++G A +++ F +M ++G +P++ ++ +LT C+H +V +G
Sbjct: 335 LPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEG 394
Query: 284 LNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLS 343
F M +V G+EP++EHY C+VDLL R+G+++EAE+FI + D +W ALL
Sbjct: 395 RRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMP--IKPDDV-IWKALLG 451
Query: 344 ACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKK 402
ACR+ G +E+G RV L +M D +V N+Y G W E +++R + E ++K
Sbjct: 452 ACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWS-EVSEMRLRMKEKDIRK 510
Query: 403 KPGCSVIEVNGVVEEFLAGDNRHAQAGEI 431
PGCS+I+++GV+ EF+ D+ H +A EI
Sbjct: 511 DPGCSLIDIDGVLHEFVVEDDSHPKAKEI 539
|
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| TAIR|locus:1009023396 AT5G40405 "AT5G40405" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 807 (289.1 bits), Expect = 2.2e-80, P = 2.2e-80
Identities = 168/434 (38%), Positives = 258/434 (59%)
Query: 1 MIRGYMQANFPKLSVFCYLDMLDMG--FEPNNYTFPPLIKACVILGPLENFGMFVHAHVV 58
MIR + ++ P+ S Y +L G +P+NYT L++AC L E G+ VH +
Sbjct: 77 MIRAHCKSPVPEKSFDFYRRILSSGNDLKPDNYTVNFLVQACTGLRMRET-GLQVHGMTI 135
Query: 59 KFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE 118
+ GF DP V + L+ Y+ + + + +F+ P D V T MV + GD AR+
Sbjct: 136 RRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSIPCPDFVCRTAMVTACARCGDVVFARK 195
Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
LFE MPER+ ++W+A+++ Y+++ + +E L++F MQ G+K N ++SVL+AC LGA
Sbjct: 196 LFEGMPERDPIAWNAMISGYAQVGESREALNVFHLMQLEGVKVNGVAMISVLSACTQLGA 255
Query: 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
+ QG W HSY +R ++ V LAT +VD+Y+KCG + A+ VF G+ K+ W++ ++G
Sbjct: 256 LDQGRWAHSYIERNKIKITVRLATTLVDLYAKCGDMEKAMEVFWGMEEKNVYTWSSALNG 315
Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
+AMNG +K LELF M + G P TFV+VL C+ V +G F++M +G+EP
Sbjct: 316 LAMNGFGEKCLELFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQRHFDSMRNEFGIEP 375
Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358
QLEHY C+VDL ARAG +E+A I++ A VW +LL A R+Y +E+G
Sbjct: 376 QLEHYGCLVDLYARAGRLEDAVSIIQQMPMK---PHAAVWSSLLHASRMYKNLELGVLAS 432
Query: 359 RKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEE 417
+K+ E+ + +VL NIY ++ WD + VR+ + G++K+PGCSV+EVNG V E
Sbjct: 433 KKMLELETANHGAYVLLSNIYADSNDWD-NVSHVRQSMKSKGVRKQPGCSVMEVNGEVHE 491
Query: 418 FLAGDNRHAQAGEI 431
F GD H + +I
Sbjct: 492 FFVGDKSHPKYTQI 505
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| TAIR|locus:2126352 AT4G37380 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 803 (287.7 bits), Expect = 6.0e-80, P = 6.0e-80
Identities = 160/421 (38%), Positives = 253/421 (60%)
Query: 18 YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYS 77
Y+ +L PN +TF L+K+C G +H HV+KFG G DP+V + L++ Y+
Sbjct: 118 YVQLLSSEINPNEFTFSSLLKSCSTKS-----GKLIHTHVLKFGLGIDPYVATGLVDVYA 172
Query: 78 LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAA 137
+ +A+ +FD+ P+R +V+ T M+ Y K G+ E AR LF+ M ER+ VSW+ ++
Sbjct: 173 KGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDG 232
Query: 138 YSRISDFKEVLSLFRQMQEVGM-KPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEK 196
Y++ + L LF+++ G KP+E +V+ L+AC+ +GA+ G W+H + K +
Sbjct: 233 YAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRL 292
Query: 197 NVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMV 256
NV + T ++DMYSKCG + A+ VF KD AWNAMI+G AM+G ++ +L LF+ M
Sbjct: 293 NVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQ 352
Query: 257 K-SGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGM 315
+G QPT+ TF+ L C HA +V +G+ +FE+M YG++P++EHY C+V LL RAG
Sbjct: 353 GITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQ 412
Query: 316 VEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLS 375
++ A + I+ M D+ +W ++L +C+++G +G + L + I + +VL
Sbjct: 413 LKRAYETIKN-MNM--DADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIKNSGIYVLL 469
Query: 376 YNIYKEAGWDMEA-NKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRV 434
NIY G D E KVR L+ E G+ K+PG S IE+ V EF AGD H+++ EIY +
Sbjct: 470 SNIYASVG-DYEGVAKVRNLMKEKGIVKEPGISTIEIENKVHEFRAGDREHSKSKEIYTM 528
Query: 435 I 435
+
Sbjct: 529 L 529
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| TAIR|locus:2081635 AT3G62890 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 795 (284.9 bits), Expect = 4.2e-79, P = 4.2e-79
Identities = 162/431 (37%), Positives = 249/431 (57%)
Query: 18 YLDMLDMGFEPNNYTFPPLIKACVILGPLE-NFGMFVHAHVVKFGFGEDPFVVSSLLEFY 76
YL M + P+ +TFP L+ + PL G HA ++ FG +DPFV +SLL Y
Sbjct: 50 YLRMRNHRVSPDFHTFPFLLPS--FHNPLHLPLGQRTHAQILLFGLDKDPFVRTSLLNMY 107
Query: 77 SLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMA 136
S + +A+ +FD S +D+ W ++V+ Y K G ++AR+LF++MPERN +SWS ++
Sbjct: 108 SSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAGLIDDARKLFDEMPERNVISWSCLIN 167
Query: 137 AYSRISDFKEVLSLFRQMQ-----EVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKR 191
Y +KE L LFR+MQ E ++PNE + +VL+AC LGA+ QG WVH+Y +
Sbjct: 168 GYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRLGALEQGKWVHAYIDK 227
Query: 192 YHLEKNVILATAVVDMYSKCGHVHSALSVFEGI-SNKDAGAWNAMISGVAMNGDAKKSLE 250
YH+E +++L TA++DMY+KCG + A VF + S KD A++AMI +AM G + +
Sbjct: 228 YHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSKKDVKAYSAMICCLAMYGLTDECFQ 287
Query: 251 LFDRMVKSGT-QPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDL 309
LF M S P TFV +L C H ++ +G + F+ M +G+ P ++HY C+VDL
Sbjct: 288 LFSEMTTSDNINPNSVTFVGILGACVHRGLINEGKSYFKMMIEEFGITPSIQHYGCMVDL 347
Query: 310 LARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDF 369
R+G+++EAE FI D +WG+LLS R+ G I+ ++L E+ +
Sbjct: 348 YGRSGLIKEAESFIASMPME---PDVLIWGSLLSGSRMLGDIKTCEGALKRLIELDPMNS 404
Query: 370 STHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAG 429
+VL N+Y + G ME +R + G+ K PGCS +EV GVV EF+ GD ++
Sbjct: 405 GAYVLLSNVYAKTGRWMEVKCIRHEMEVKGINKVPGCSYVEVEGVVHEFVVGDESQQESE 464
Query: 430 EIYRVIHSFLK 440
IY ++ ++
Sbjct: 465 RIYAMLDEIMQ 475
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| TAIR|locus:2060640 OTP81 "ORGANELLE TRANSCRIPT PROCESSING 81" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 790 (283.2 bits), Expect = 1.4e-78, P = 1.4e-78
Identities = 154/442 (34%), Positives = 264/442 (59%)
Query: 1 MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
MI G++Q P ++ + M + ++ T ++ AC + LE FG V +++ +
Sbjct: 203 MINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLE-FGRQVCSYIEEN 261
Query: 61 GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
+ + +++L+ Y+ + A+ LFD ++D VTWTTM+DGY D+E ARE+
Sbjct: 262 RVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVL 321
Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQ-EVGMKPNESGLVSVLTACAHLGAI 179
MP+++ V+W+A+++AY + E L +F ++Q + MK N+ LVS L+ACA +GA+
Sbjct: 322 NSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGAL 381
Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
G W+HSY K++ + N + +A++ MYSKCG + + VF + +D W+AMI G+
Sbjct: 382 ELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGL 441
Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
AM+G +++++F +M ++ +P TF V C+H +V + +LF M + YG+ P+
Sbjct: 442 AMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPE 501
Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
+HYAC+VD+L R+G +E+A KFIE +VWGALL AC+I+ + +
Sbjct: 502 EKHYACIVDVLGRSGYLEKAVKFIEAMPIP---PSTSVWGALLGACKIHANLNLAEMACT 558
Query: 360 KLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEF 418
+L E+ + HVL NIY + G W+ +++RK + TG+KK+PGCS IE++G++ EF
Sbjct: 559 RLLELEPRNDGAHVLLSNIYAKLGKWE-NVSELRKHMRVTGLKKEPGCSSIEIDGMIHEF 617
Query: 419 LAGDNRHAQAGEIYRVIHSFLK 440
L+GDN H + ++Y +H ++
Sbjct: 618 LSGDNAHPMSEKVYGKLHEVME 639
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| TAIR|locus:2054789 MEF21 "mitochondrial editing factor 21" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 787 (282.1 bits), Expect = 3.0e-78, P = 3.0e-78
Identities = 160/440 (36%), Positives = 260/440 (59%)
Query: 1 MIRGYMQANFPKLSVFCYLDMLDMGFE-PNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
+IR Y + + Y +L FE P+ +TFP + K+C LG G VH H+ K
Sbjct: 79 IIRAYTHNSLYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCY-LGKQVHGHLCK 137
Query: 60 FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
FG ++L++ Y + A +FD+ +RDV++W +++ GY ++G + A+ L
Sbjct: 138 FGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMYERDVISWNSLLSGYARLGQMKKAKGL 197
Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
F M ++ VSW+A+++ Y+ I + E + FR+MQ G++P+E L+SVL +CA LG++
Sbjct: 198 FHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVLPSCAQLGSL 257
Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
G W+H YA+R K + A+++MYSKCG + A+ +F + KD +W+ MISG
Sbjct: 258 ELGKWIHLYAERRGFLKQTGVCNALIEMYSKCGVISQAIQLFGQMEGKDVISWSTMISGY 317
Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
A +G+A ++E F+ M ++ +P TF+ +L+ C+H M ++GL F+ M Y +EP+
Sbjct: 318 AYHGNAHGAIETFNEMQRAKVKPNGITFLGLLSACSHVGMWQEGLRYFDMMRQDYQIEPK 377
Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
+EHY C++D+LARAG +E A + I + M D+ +WG+LLS+CR G ++V
Sbjct: 378 IEHYGCLIDVLARAGKLERAVE-ITKTMPMKP--DSKIWGSLLSSCRTPGNLDVALVAMD 434
Query: 360 KLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEF 418
L E+ D +VL NIY + G W+ + +++RK+I MKK PG S+IEVN +V+EF
Sbjct: 435 HLVELEPEDMGNYVLLANIYADLGKWE-DVSRLRKMIRNENMKKTPGGSLIEVNNIVQEF 493
Query: 419 LAGDNRHAQAGEIYRVIHSF 438
++GDN EI V+ F
Sbjct: 494 VSGDNSKPFWTEISIVLQLF 513
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| TAIR|locus:2045580 AT2G42920 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 771 (276.5 bits), Expect = 1.5e-76, P = 1.5e-76
Identities = 159/437 (36%), Positives = 253/437 (57%)
Query: 1 MIRGYMQANFPKLSVFCYLDML--DMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVV 58
+IRG+ +++FP++++ ++DML +P T+P + KA LG + G +H V+
Sbjct: 95 IIRGFSRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSVFKAYGRLGQARD-GRQLHGMVI 153
Query: 59 KFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE 118
K G +D F+ +++L Y + A +F DVV W +M+ G+ K G + A+
Sbjct: 154 KEGLEDDSFIRNTMLHMYVTCGCLIEAWRIFLGMIGFDVVAWNSMIMGFAKCGLIDQAQN 213
Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
LF++MP+RN VSW+++++ + R FK+ L +FR+MQE +KP+ +VS+L ACA+LGA
Sbjct: 214 LFDEMPQRNGVSWNSMISGFVRNGRFKDALDMFREMQEKDVKPDGFTMVSLLNACAYLGA 273
Query: 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
QG W+H Y R E N I+ TA++DMY KCG + L+VFE K WN+MI G
Sbjct: 274 SEQGRWIHEYIVRNRFELNSIVVTALIDMYCKCGCIEEGLNVFECAPKKQLSCWNSMILG 333
Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
+A NG +++++LF + +SG +P +F+ VLT C H+ V F M Y +EP
Sbjct: 334 LANNGFEERAMDLFSELERSGLEPDSVSFIGVLTACAHSGEVHRADEFFRLMKEKYMIEP 393
Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358
++HY +V++L AG++EEAE I+ D +W +LLSACR G +E+ R
Sbjct: 394 SIKHYTLMVNVLGGAGLLEEAEALIKNMPVE---EDTVIWSSLLSACRKIGNVEMAKRAA 450
Query: 359 RKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEF 418
+ L ++ + +VL N Y G EA + R L+ E M+K+ GCS IEV+ V EF
Sbjct: 451 KCLKKLDPDETCGYVLLSNAYASYGLFEEAVEQRLLMKERQMEKEVGCSSIEVDFEVHEF 510
Query: 419 LAGDNRHAQAGEIYRVI 435
++ H ++ EIY ++
Sbjct: 511 ISCGGTHPKSAEIYSLL 527
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00016885001 | SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (451 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 445 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-91 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-74 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 8e-40 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-39 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-32 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 8e-30 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-14 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-09 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-06 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-06 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 5e-05 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 9e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 5e-04 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 0.002 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.002 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.003 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 0.003 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 294 bits (753), Expect = 3e-91
Identities = 152/444 (34%), Positives = 228/444 (51%), Gaps = 40/444 (9%)
Query: 1 MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
MI GY + P ++ Y M P+ T ++ AC LG L+ G+ +H +
Sbjct: 360 MISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDV-GVKLHELAERK 418
Query: 61 GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
G V ++L+E YS K + A E+F
Sbjct: 419 GLISYVVVANALIEMYS-------------------------------KCKCIDKALEVF 447
Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
+PE++ +SW++I+A + E L FRQM + +KPN L++ L+ACA +GA+
Sbjct: 448 HNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQML-LTLKPNSVTLIAALSACARIGALM 506
Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
G +H++ R + + L A++D+Y +CG ++ A + F KD +WN +++G
Sbjct: 507 CGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFN-SHEKDVVSWNILLTGYV 565
Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
+G ++ELF+RMV+SG P E TF+++L C+ + MV GL F +M Y + P L
Sbjct: 566 AHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNL 625
Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
+HYACVVDLL RAG + EA FI KM D VWGALL+ACRI+ +E+G +
Sbjct: 626 KHYACVVDLLGRAGKLTEAYNFI-NKMP--ITPDPAVWGALLNACRIHRHVELGELAAQH 682
Query: 361 LAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
+ E+ ++L N+Y +AG WD E +VRK + E G+ PGCS +EV G V FL
Sbjct: 683 IFELDPNSVGYYILLCNLYADAGKWD-EVARVRKTMRENGLTVDPGCSWVEVKGKVHAFL 741
Query: 420 AGDNRHAQAGEIYRVIHSFL-KMS 442
D H Q EI V+ F KM
Sbjct: 742 TDDESHPQIKEINTVLEGFYEKMK 765
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 246 bits (630), Expect = 1e-74
Identities = 128/440 (29%), Positives = 223/440 (50%), Gaps = 35/440 (7%)
Query: 1 MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
+I G + A + + + +M + G + TF +++A LG G +H V+K
Sbjct: 195 IIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLG-SARAGQQLHCCVLKT 253
Query: 61 GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
G D FV +L++ YS K GD E+AR +F
Sbjct: 254 GVVGDTFVSCALIDMYS-------------------------------KCGDIEDARCVF 282
Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
+ MPE+ V+W++++A Y+ +E L L+ +M++ G+ ++ ++ + L +
Sbjct: 283 DGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLE 342
Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
H+ R +++ TA+VD+YSK G + A +VF+ + K+ +WNA+I+G
Sbjct: 343 HAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYG 402
Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
+G K++E+F+RM+ G P TF+AVL+ C ++ + G +F++MS + ++P+
Sbjct: 403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRA 462
Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
HYAC+++LL R G+++EA I N+W ALL+ACRI+ +E+G K
Sbjct: 463 MHYACMIELLGREGLLDEAYAMIRR---APFKPTVNMWAALLTACRIHKNLELGRLAAEK 519
Query: 361 LAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLA 420
L MG + +V+ N+Y +G EA KV + + G+ P C+ IEV F +
Sbjct: 520 LYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFS 579
Query: 421 GDNRHAQAGEIYRVIHSFLK 440
GD H Q+ EIY+ + +K
Sbjct: 580 GDRLHPQSREIYQKLDELMK 599
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 152 bits (385), Expect = 8e-40
Identities = 104/379 (27%), Positives = 175/379 (46%), Gaps = 65/379 (17%)
Query: 1 MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
MI GY + + + M ++ +P+ T +I AC +LG E G +H +VVK
Sbjct: 259 MISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGD-ERLGREMHGYVVKT 317
Query: 61 GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
GF D V +SL++ Y + G A +F + +D V+WT M+ GY K G
Sbjct: 318 GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNG--------- 368
Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
+P++ L + M++ + P+E + SVL+ACA LG +
Sbjct: 369 --LPDK--------------------ALETYALMEQDNVSPDEITIASVLSACACLGDLD 406
Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
G+ +H A+R L V++A A+++MYSKC + AL VF I KD +W ++I+G+
Sbjct: 407 VGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLR 466
Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCT-----------HAKMVRDGLNLFEN 289
+N ++L F +M+ + +P T +A L+ C HA ++R G+
Sbjct: 467 LNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGI----- 520
Query: 290 MSAVYGVEPQLEHYACVVDLLARAGMVEEA-EKF-IEEKMGGLGGGDANVWGALLSACRI 347
G + L + ++DL R G + A +F EK D W LL+
Sbjct: 521 -----GFDGFLPN--ALLDLYVRCGRMNYAWNQFNSHEK-------DVVSWNILLTGYVA 566
Query: 348 YGKIEVGNRVWRKLAEMGI 366
+GK + ++ ++ E G+
Sbjct: 567 HGKGSMAVELFNRMVESGV 585
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 151 bits (383), Expect = 1e-39
Identities = 91/288 (31%), Positives = 140/288 (48%), Gaps = 32/288 (11%)
Query: 1 MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
++ GY +A + ++ Y ML G P+ YTFP +++ C + L G VHAHVV+F
Sbjct: 158 LVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLAR-GREVHAHVVRF 216
Query: 61 GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
GF D VV++L+ TM Y K GD +AR +F
Sbjct: 217 GFELDVDVVNALI----------------------------TM---YVKCGDVVSARLVF 245
Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
++MP R+ +SW+A+++ Y + E L LF M+E+ + P+ + SV++AC LG
Sbjct: 246 DRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDER 305
Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
G +H Y + +V + +++ MY G A VF + KDA +W AMISG
Sbjct: 306 LGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYE 365
Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFE 288
NG K+LE + M + P E T +VL+ C + G+ L E
Sbjct: 366 KNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHE 413
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 129 bits (327), Expect = 2e-32
Identities = 83/308 (26%), Positives = 140/308 (45%), Gaps = 46/308 (14%)
Query: 94 DRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQ 153
+ D ++ + K G +AR LF++MPERN SW I+ +++E +LFR+
Sbjct: 155 EPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFRE 214
Query: 154 MQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGH 213
M E G V +L A A LG+ G +H + + + ++ A++DMYSKCG
Sbjct: 215 MWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGD 274
Query: 214 VHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTT 273
+ A VF+G+ K AWN+M++G A++G ++++L L+ M SG + TF ++
Sbjct: 275 IEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRI 334
Query: 274 CT------HAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKM 327
+ HAK GL G + +VDL ++ G +E+A + + ++M
Sbjct: 335 FSRLALLEHAKQAHAGL-------IRTGFPLDIVANTALVDLYSKWGRMEDA-RNVFDRM 386
Query: 328 --------GGLGGGDAN------------------------VWGALLSACRIYGKIEVGN 355
L G N + A+LSACR G E G
Sbjct: 387 PRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGW 446
Query: 356 RVWRKLAE 363
+++ ++E
Sbjct: 447 EIFQSMSE 454
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 8e-30
Identities = 70/237 (29%), Positives = 113/237 (47%), Gaps = 5/237 (2%)
Query: 109 KMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVS 168
+ G+ +A +F KMPER+ SW+ ++ Y++ F E L L+ +M G++P+
Sbjct: 133 RFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPC 192
Query: 169 VLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKD 228
VL C + + +G VH++ R+ E +V + A++ MY KCG V SA VF+ + +D
Sbjct: 193 VLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRD 252
Query: 229 AGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFE 288
+WNAMISG NG+ + LELF M + P T +V++ C R G +
Sbjct: 253 CISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREM-H 311
Query: 289 NMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSAC 345
G + ++ + G EAEK + DA W A++S
Sbjct: 312 GYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKV----FSRMETKDAVSWTAMISGY 364
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 5e-14
Identities = 46/152 (30%), Positives = 71/152 (46%), Gaps = 11/152 (7%)
Query: 146 EVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVV 205
+ L L MQE+ + +E V++ C A+ +G V S A H V L A++
Sbjct: 69 QALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAML 128
Query: 206 DMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTET 265
M+ + G + A VF + +D +WN ++ G A G ++L L+ RM+ +G +P
Sbjct: 129 SMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVY 188
Query: 266 TFVAVLTTC-----------THAKMVRDGLNL 286
TF VL TC HA +VR G L
Sbjct: 189 TFPCVLRTCGGIPDLARGREVHAHVVRFGFEL 220
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 50.9 bits (123), Expect = 9e-09
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Query: 96 DVVTWTTMVDGYGKMGDFENARELFEKMPER----NAVSWSAIMAAYSR 140
DVVT+ T++DGY K G E A +LF +M +R N ++S ++ +
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 43.9 bits (105), Expect = 2e-06
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 96 DVVTWTTMVDGYGKMGDFENARELFEKMP 124
DVVT+ T++DG + G + A EL ++M
Sbjct: 6 DVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 3e-06
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 98 VTWTTMVDGYGKMGDFENARELFEKMPERN 127
VT+ +++ GY K G E A ELF++M E+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKG 30
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 3e-06
Identities = 56/283 (19%), Positives = 125/283 (44%), Gaps = 13/283 (4%)
Query: 96 DVVTWTTMVDGYGKMGDFENARELFEKMPERNA----VSWSAIMAAYSRISDFKEVLSLF 151
+V T+ ++DG + G A + M +N V ++A+++A + +
Sbjct: 506 NVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVL 565
Query: 152 RQM--QEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYS 209
+M + + P+ + +++ ACA+ G + + V+ Y+++ + T V+ S
Sbjct: 566 AEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCS 625
Query: 210 KCGHVHSALSVFEGISNK----DAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTET 265
+ G ALS+++ + K D ++A++ GD K+ E+ K G +
Sbjct: 626 QKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTV 685
Query: 266 TFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEE 325
++ +++ C++AK + L L+E++ ++ + P + ++ L + +A + + E
Sbjct: 686 SYSSLMGACSNAKNWKKALELYEDIKSI-KLRPTVSTMNALITALCEGNQLPKALEVLSE 744
Query: 326 KMGGLGGGDANV-WGALLSACRIYGKIEVGNRVWRKLAEMGIT 367
M LG + + LL A +VG + + E GI
Sbjct: 745 -MKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIK 786
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 4e-06
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 227 KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTC 274
D +N +I G G +++L+LF+ M K G +P T+ ++
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 2e-05
Identities = 47/194 (24%), Positives = 90/194 (46%), Gaps = 15/194 (7%)
Query: 20 DML-DMGFE-----PNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLL 73
D+L +M E P++ T L+KAC G ++ V+ + ++ P V + +
Sbjct: 563 DVLAEMKAETHPIDPDHITVGALMKACANAGQVDR-AKEVYQMIHEYNIKGTPEVYTIAV 621
Query: 74 EFYSLVHKMGTARALFDKSPDRDV----VTWTTMVDGYGKMGDFENARELFEKMPERN-- 127
S A +++D + V V ++ +VD G GD + A E+ + ++
Sbjct: 622 NSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK 681
Query: 128 --AVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWV 185
VS+S++M A S ++K+ L L+ ++ + ++P S + +++TA + + L V
Sbjct: 682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEV 741
Query: 186 HSYAKRYHLEKNVI 199
S KR L N I
Sbjct: 742 LSEMKRLGLCPNTI 755
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 41.2 bits (98), Expect = 3e-05
Identities = 11/37 (29%), Positives = 23/37 (62%)
Query: 127 NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNE 163
+ V+++ ++ Y + +E L LF +M++ G+KPN
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNV 38
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 5e-05
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 98 VTWTTMVDGYGKMGDFENARELFEKMPERN 127
VT+ T++DG K G E A ELF++M ER
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERG 30
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 9e-05
Identities = 62/289 (21%), Positives = 116/289 (40%), Gaps = 58/289 (20%)
Query: 20 DMLDMGFEPNNYTFPPLIKACVILGPL-ENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSL 78
+M++ G E N +TF LI C G + + FG +G V + F +L
Sbjct: 497 EMVNAGVEANVHTFGALIDGCARAGQVAKAFG--------AYGIMRSKNVKPDRVVFNAL 548
Query: 79 VHKMGTARAL---FD---------KSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPER 126
+ G + A+ FD D D +T ++ G + A+E+++ + E
Sbjct: 549 ISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY 608
Query: 127 N-----AVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQ 181
N V ++ + + S+ D+ LS++ M++ G+KP+E +++ H G + +
Sbjct: 609 NIKGTPEV-YTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDK 667
Query: 182 GLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAM 241
+ A++ + + L T YS S+ SN A W
Sbjct: 668 AFEILQDARK----QGIKLGTVS---YS---------SLMGACSN--AKNW--------- 700
Query: 242 NGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENM 290
KK+LEL++ + +PT +T A++T + L + M
Sbjct: 701 ----KKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEM 745
|
Length = 1060 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 1e-04
Identities = 9/35 (25%), Positives = 22/35 (62%)
Query: 129 VSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNE 163
V+++ ++ + +E L LF++M+E G++P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 5e-04
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 231 AWNAMISGVAMNGDAKKSLELFDRMVKSG 259
+N++ISG G +++LELF M + G
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKG 30
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.002
Identities = 42/204 (20%), Positives = 88/204 (43%), Gaps = 9/204 (4%)
Query: 123 MPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQG 182
+ +++ +M+ + D L + R +QE G+K + ++++ CA G +
Sbjct: 432 IRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAM 491
Query: 183 LWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK----DAGAWNAMISG 238
V +E NV A++D ++ G V A + + +K D +NA+IS
Sbjct: 492 FEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISA 551
Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTE---TTFVAVLTTCTHAKMVRDGLNLFENMSAVYG 295
+G ++ ++ M K+ T P + T A++ C +A V +++ + Y
Sbjct: 552 CGQSGAVDRAFDVLAEM-KAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHE-YN 609
Query: 296 VEPQLEHYACVVDLLARAGMVEEA 319
++ E Y V+ ++ G + A
Sbjct: 610 IKGTPEVYTIAVNSCSQKGDWDFA 633
|
Length = 1060 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.002
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 231 AWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTE 264
+N +I G+ G +++LELF M + G +P
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 35.6 bits (83), Expect = 0.002
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 97 VVTWTTMVDGYGKMGDFENARELFEKMPERN 127
+ T+ ++ K GD + A + E+M
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASG 31
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.003
Identities = 9/31 (29%), Positives = 22/31 (70%)
Query: 129 VSWSAIMAAYSRISDFKEVLSLFRQMQEVGM 159
V+++++++ Y + +E L LF++M+E G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 39.5 bits (92), Expect = 0.003
Identities = 51/202 (25%), Positives = 83/202 (41%), Gaps = 24/202 (11%)
Query: 224 ISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDG 283
I N +N ++S A + D +L + + ++G + + +++TC + V
Sbjct: 432 IRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAM 491
Query: 284 LNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLG-------GGDAN 336
+F M GVE + + ++D ARAG V +A G G D
Sbjct: 492 FEVFHEMV-NAGVEANVHTFGALIDGCARAGQVAKA-------FGAYGIMRSKNVKPDRV 543
Query: 337 VWGALLSACRIYGKIEVGNRVWRKLAEMGITDFST---HVLSYNIYK---EAGWDMEANK 390
V+ AL+SAC G ++ R + LAEM H+ + K AG A +
Sbjct: 544 VFNALISACGQSGAVD---RAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKE 600
Query: 391 VRKLISETGMKKKPGCSVIEVN 412
V ++I E +K P I VN
Sbjct: 601 VYQMIHEYNIKGTPEVYTIAVN 622
|
Length = 1060 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 445 | |||
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.97 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.97 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.92 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.92 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.92 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.91 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.9 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.9 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.9 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.89 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.89 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.89 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.86 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.85 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.85 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.84 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.84 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.81 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.75 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.75 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.75 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.74 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.74 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.73 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.73 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.72 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.71 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.68 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.68 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.67 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.66 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.66 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.65 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.65 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.63 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.63 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.63 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.62 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.61 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.58 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.58 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.58 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.57 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.55 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.55 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.53 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.5 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.5 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.47 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.44 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.43 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.41 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.4 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.4 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.39 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.37 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.35 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.34 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.32 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.31 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.3 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.28 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.28 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.27 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.26 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.26 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.25 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.25 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.24 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.23 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.23 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.23 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.2 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.19 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.18 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.18 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.17 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.17 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.17 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.17 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.17 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.13 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.13 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.12 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.11 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.09 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.0 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.97 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.97 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.95 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.95 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.93 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.92 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.92 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.92 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.9 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.89 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.88 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.83 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.83 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.82 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.79 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.78 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.77 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.77 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.76 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.76 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.75 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.75 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.72 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.71 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.7 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.68 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.68 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.67 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.66 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.65 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.65 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.65 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.64 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.64 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.64 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.64 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.64 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.61 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.6 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.57 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.56 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.55 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.55 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.53 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.45 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.42 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.4 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.34 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.3 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.29 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.27 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.23 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.21 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.2 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.17 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.17 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.17 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.16 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.15 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.14 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.14 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.12 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.1 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.09 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.08 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.06 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.06 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 98.03 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 98.02 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.02 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.0 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.0 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.0 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.99 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.95 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.94 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.9 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.9 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.88 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.87 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.86 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.85 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.81 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.81 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.8 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.79 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.78 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.76 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.75 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.75 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.74 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.73 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.71 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.7 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.68 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.68 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.68 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.66 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.63 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.62 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.61 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.55 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.5 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.48 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.48 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.45 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.43 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.41 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.4 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.39 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.38 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.36 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.35 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.35 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.34 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.34 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.3 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.25 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.23 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.23 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.22 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.21 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.21 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.18 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.17 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.09 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.91 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.91 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.83 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.82 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.81 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.8 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.71 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.63 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.56 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.48 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.46 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.45 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.41 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.4 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.34 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 96.24 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.24 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 96.22 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.2 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.15 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 96.13 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.1 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.03 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.03 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 95.88 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.86 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.79 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.76 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 95.75 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 95.73 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 95.73 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 95.69 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.61 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 95.59 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.58 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.54 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.47 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 95.47 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.45 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.44 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.4 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.38 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.29 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 95.26 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 95.16 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.16 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 95.14 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 95.13 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.13 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.11 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.1 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.09 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.88 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.77 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 94.76 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 94.71 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.69 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 94.65 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 94.5 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 94.45 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 94.4 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 94.34 | |
| PRK09687 | 280 | putative lyase; Provisional | 94.24 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.14 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.09 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.03 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 93.91 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 93.78 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 93.77 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 93.72 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 93.7 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.69 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.67 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 93.67 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 93.61 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 93.57 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 93.39 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 93.36 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 93.05 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 93.0 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 92.96 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 92.91 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 92.88 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 92.72 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 92.57 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 92.54 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 92.52 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 92.49 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 92.25 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 92.02 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 91.79 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 91.32 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 91.24 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 91.14 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 90.99 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 90.95 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 90.91 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 90.71 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 90.62 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 90.49 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 90.4 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 90.37 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 90.05 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 90.05 | |
| PRK09687 | 280 | putative lyase; Provisional | 89.96 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 89.94 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 89.69 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 89.56 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 89.47 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 89.22 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 89.21 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 88.98 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 88.94 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 88.89 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 88.33 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 88.15 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 88.14 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 88.0 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 87.78 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 87.68 | |
| KOG4077 | 149 | consensus Cytochrome c oxidase, subunit Va/COX6 [E | 87.5 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 87.48 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 87.46 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 87.21 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 86.86 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 86.82 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 85.97 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 85.51 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 85.37 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 84.71 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 84.45 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 84.36 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 84.26 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 84.15 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 84.04 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 83.69 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 83.26 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 83.24 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 83.02 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 82.14 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 81.35 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 80.16 |
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-69 Score=526.60 Aligned_cols=438 Identities=29% Similarity=0.539 Sum_probs=411.8
Q ss_pred hhchhhcCCchHHHHHHHHHHhc-CCCCCcccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcC
Q 047840 2 IRGYMQANFPKLSVFCYLDMLDM-GFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVH 80 (445)
Q Consensus 2 i~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (445)
|.+|.+.|++++|+++|++|... ++.||..+|+.++.+|++.++.+ .+.+++..|.+.|+.||..+|+.++.+|++.|
T Consensus 94 i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~-~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g 172 (697)
T PLN03081 94 IEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIR-CVKAVYWHVESSGFEPDQYMMNRVLLMHVKCG 172 (697)
T ss_pred HHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHH-HHHHHHHHHHHhCCCcchHHHHHHHHHHhcCC
Confidence 67788999999999999999876 47899999999999999999999 89999999999999999999999999999999
Q ss_pred CHHHHHHHhccCCCCChhhHHHHHHHHHcCCChHHHHHHhccC-------------------------------------
Q 047840 81 KMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKM------------------------------------- 123 (445)
Q Consensus 81 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~------------------------------------- 123 (445)
+++.|.++|++|.+||..+|++++.+|++.|++++|+++|++|
T Consensus 173 ~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~ 252 (697)
T PLN03081 173 MLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLK 252 (697)
T ss_pred CHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 9999999999888887777777777766666666666665554
Q ss_pred ---------------------------------CCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 047840 124 ---------------------------------PERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVL 170 (445)
Q Consensus 124 ---------------------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 170 (445)
..+|+.+||.++.+|++.|++++|+++|++|.+.|+.||..||+.++
T Consensus 253 ~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll 332 (697)
T PLN03081 253 TGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMI 332 (697)
T ss_pred hCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 45688899999999999999999999999999999999999999999
Q ss_pred HHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCChHHHHH
Q 047840 171 TACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLE 250 (445)
Q Consensus 171 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 250 (445)
.+|++.|++++|.+++..|.+.|++||..++++|+.+|++.|++++|.++|++|.++|..+||+||.+|++.|+.++|++
T Consensus 333 ~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~ 412 (697)
T PLN03081 333 RIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVE 412 (697)
T ss_pred HHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCC
Q 047840 251 LFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGL 330 (445)
Q Consensus 251 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 330 (445)
+|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+.+|+.|+..+|+.++++|++.|++++|.++++++ +
T Consensus 413 lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~ 489 (697)
T PLN03081 413 MFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---P 489 (697)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---C
Confidence 9999999999999999999999999999999999999999987799999999999999999999999999999988 7
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhcCCccCCcccEEE
Q 047840 331 GGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIE 410 (445)
Q Consensus 331 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ 410 (445)
+.|+..+|++++.+|...|+++.|..+++++.+.+|++..+|..++.+|.+.|+|++|.++++.|++.|+++.|+++|+.
T Consensus 490 ~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~ 569 (697)
T PLN03081 490 FKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIE 569 (697)
T ss_pred CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCeEeEEecCCCCcchhhHHHHHHHHHHhccc
Q 047840 411 VNGVVEEFLAGDNRHAQAGEIYRVIHSFLKMSN 443 (445)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (445)
+.+.++.|..++.+||+..+||+.++++....+
T Consensus 570 ~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~ 602 (697)
T PLN03081 570 VKKQDHSFFSGDRLHPQSREIYQKLDELMKEIS 602 (697)
T ss_pred ECCeEEEEccCCCCCccHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998877654
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-67 Score=525.70 Aligned_cols=437 Identities=36% Similarity=0.645 Sum_probs=407.1
Q ss_pred ChhchhhcCCchHHHHHHHHHHhcCCCCCcccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcC
Q 047840 1 MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVH 80 (445)
Q Consensus 1 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (445)
||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+ .+.+++..+.+.|+.||..+|+.|+.+|++.|
T Consensus 259 li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~-~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g 337 (857)
T PLN03077 259 MISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDER-LGREMHGYVVKTGFAVDVSVCNSLIQMYLSLG 337 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChH-HHHHHHHHHHHhCCccchHHHHHHHHHHHhcC
Confidence 57899999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred CHHHHHHHhccCCCCChhhHHHHHHHHHcCCChHHHHHHhccC-------------------------------------
Q 047840 81 KMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKM------------------------------------- 123 (445)
Q Consensus 81 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~------------------------------------- 123 (445)
++++|.++|++|..||..+|+++|.+|++.|++++|+++|++|
T Consensus 338 ~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~ 417 (857)
T PLN03077 338 SWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAER 417 (857)
T ss_pred CHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 9999999999998888888888887777777777777766655
Q ss_pred ---------------------------------CCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 047840 124 ---------------------------------PERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVL 170 (445)
Q Consensus 124 ---------------------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 170 (445)
.++|..+|+.++.+|.+.|+.++|+++|++|.. ++.||..||+.++
T Consensus 418 ~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL 496 (857)
T PLN03077 418 KGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAAL 496 (857)
T ss_pred hCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHH
Confidence 345556666666666666667777777777764 4789999999999
Q ss_pred HHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCChHHHHH
Q 047840 171 TACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLE 250 (445)
Q Consensus 171 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 250 (445)
.+|++.|+++.+.+++..+.+.|+.++..++++|+.+|++.|++++|..+|+.+ .+|..+|+++|.+|++.|+.++|++
T Consensus 497 ~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~ 575 (857)
T PLN03077 497 SACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVE 575 (857)
T ss_pred HHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999 8999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCC
Q 047840 251 LFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGL 330 (445)
Q Consensus 251 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 330 (445)
+|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+.+|+.|+..+|+.++++|++.|++++|.+++++| +
T Consensus 576 lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m---~ 652 (857)
T PLN03077 576 LFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---P 652 (857)
T ss_pred HHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC---C
Confidence 9999999999999999999999999999999999999999977799999999999999999999999999999999 6
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhcCCccCCcccEEE
Q 047840 331 GGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIE 410 (445)
Q Consensus 331 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ 410 (445)
++||..+|++|+.+|...|+.+.+....+++.+..|+++..|..++..|...|+|++|.++.+.|++.|++++||+||+.
T Consensus 653 ~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie 732 (857)
T PLN03077 653 ITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVE 732 (857)
T ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCeEeEEecCCCCcchhhHHHHHHHHHHhccc
Q 047840 411 VNGVVEEFLAGDNRHAQAGEIYRVIHSFLKMSN 443 (445)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (445)
+++.++.|..++.+||+..+||+.++.+.+.++
T Consensus 733 ~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~ 765 (857)
T PLN03077 733 VKGKVHAFLTDDESHPQIKEINTVLEGFYEKMK 765 (857)
T ss_pred ECCEEEEEecCCCCCcchHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999887654
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-60 Score=463.69 Aligned_cols=407 Identities=18% Similarity=0.266 Sum_probs=362.2
Q ss_pred hchhhcCCchHHHHHHHHHHhcCCC--------------------------------CCcccHHHHHHHhhhcCCchhHH
Q 047840 3 RGYMQANFPKLSVFCYLDMLDMGFE--------------------------------PNNYTFPPLIKACVILGPLENFG 50 (445)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~m~~~~~~--------------------------------p~~~~~~~ll~~~~~~~~~~~~a 50 (445)
..|++.|++++|+++|++|...|+. ||..+|+.++.+|++.|+++ .|
T Consensus 378 ~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e-~A 456 (1060)
T PLN03218 378 NRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDID-GA 456 (1060)
T ss_pred HHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHH-HH
Confidence 4455566666666666666655532 78889999999999999999 99
Q ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHhccCC----CCChhhHHHHHHHHHcCCChHHHHHHhccCC--
Q 047840 51 MFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSP----DRDVVTWTTMVDGYGKMGDFENARELFEKMP-- 124 (445)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-- 124 (445)
.++++.|.+.|+.||..+|+.++.+|++.|+++.|.++|++|. .||..+|+.+|.+|++.|++++|.++|+.|.
T Consensus 457 ~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~ 536 (1060)
T PLN03218 457 LRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSK 536 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999887 4799999999999999999999999999996
Q ss_pred --CCChhhHHHHHHHHHhcCCHhHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhh
Q 047840 125 --ERNAVSWSAIMAAYSRISDFKEVLSLFRQMQE--VGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVIL 200 (445)
Q Consensus 125 --~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 200 (445)
.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|+.|.+.|++|+..+
T Consensus 537 Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~t 616 (1060)
T PLN03218 537 NVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEV 616 (1060)
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHH
Confidence 38999999999999999999999999999976 67899999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHccCChHHHHHHhhcCCC----CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc
Q 047840 201 ATAVVDMYSKCGHVHSALSVFEGISN----KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTH 276 (445)
Q Consensus 201 ~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 276 (445)
|+.++.+|++.|++++|.++|++|.. ||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.++.+|++
T Consensus 617 ynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k 696 (1060)
T PLN03218 617 YTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSN 696 (1060)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999874 68889999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 047840 277 AKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNR 356 (445)
Q Consensus 277 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 356 (445)
.|++++|.++|++|... |+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|.+.|++++|.+
T Consensus 697 ~G~~eeA~~lf~eM~~~-g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~ 775 (1060)
T PLN03218 697 AKNWKKALELYEDIKSI-KLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLD 775 (1060)
T ss_pred CCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999876 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCC-CchhHHHHHHHHHH----c-------------------CChHHHHHHHHHHHhcCCccCCcccEEEE
Q 047840 357 VWRKLAEMGIT-DFSTHVLSYNIYKE----A-------------------GWDMEANKVRKLISETGMKKKPGCSVIEV 411 (445)
Q Consensus 357 ~~~~~~~~~~~-~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ 411 (445)
++++|.+.+.. +..+|..++..|.+ + +..++|..+|++|.+.|+.|+..+....+
T Consensus 776 l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL 854 (1060)
T PLN03218 776 LLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVL 854 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHH
Confidence 99999997764 67778877765432 2 22467999999999999999876654433
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-60 Score=464.16 Aligned_cols=382 Identities=16% Similarity=0.215 Sum_probs=339.6
Q ss_pred CCCcccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCC--------------------------------CChhhHHHHHH
Q 047840 27 EPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFG--------------------------------EDPFVVSSLLE 74 (445)
Q Consensus 27 ~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~--------------------------------~~~~~~~~l~~ 74 (445)
.++...|..++..+++.|+++ .|.++|+.|.+.|+. ||..+|+.++.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~-eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~ 445 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIK-DCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMS 445 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHH-HHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 345666667777777777777 677777777666532 67888999999
Q ss_pred HHHhcCCHHHHHHHhccCCC----CChhhHHHHHHHHHcCCChHHHHHHhccCC----CCChhhHHHHHHHHHhcCCHhH
Q 047840 75 FYSLVHKMGTARALFDKSPD----RDVVTWTTMVDGYGKMGDFENARELFEKMP----ERNAVSWSAIMAAYSRISDFKE 146 (445)
Q Consensus 75 ~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~ 146 (445)
+|++.|+++.|.++|+.|.+ ||..+|+.+|.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ee 525 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAK 525 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHH
Confidence 99999999999999987753 788999999999999999999999999997 4799999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHH--cCCCCchhhhhHHHHHHHccCChHHHHHHhhcC
Q 047840 147 VLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKR--YHLEKNVILATAVVDMYSKCGHVHSALSVFEGI 224 (445)
Q Consensus 147 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 224 (445)
|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.. .|+.||..+|++++.+|++.|++++|.++|+.|
T Consensus 526 Al~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M 605 (1060)
T PLN03218 526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI 605 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999976 578899999999999999999999999999988
Q ss_pred CC----CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCCh
Q 047840 225 SN----KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300 (445)
Q Consensus 225 ~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 300 (445)
.+ ++..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+. |+.|+.
T Consensus 606 ~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~-G~~pd~ 684 (1060)
T PLN03218 606 HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ-GIKLGT 684 (1060)
T ss_pred HHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCH
Confidence 75 4668999999999999999999999999999999999999999999999999999999999999987 999999
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCchhHHHHHHHH
Q 047840 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI-TDFSTHVLSYNIY 379 (445)
Q Consensus 301 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~ 379 (445)
.+|++|+.+|++.|++++|.++|++|.+.++.||..+|+.++.+|++.|++++|.++|++|.+.+. ++..+|..++.+|
T Consensus 685 ~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~ 764 (1060)
T PLN03218 685 VSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVAS 764 (1060)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999889999999999999999999999999999999998765 4788999999999
Q ss_pred HHcCChHHHHHHHHHHHhcCCccCCcccEEE
Q 047840 380 KEAGWDMEANKVRKLISETGMKKKPGCSVIE 410 (445)
Q Consensus 380 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ 410 (445)
.+.|++++|.+++..|.+.|+.|+..++..+
T Consensus 765 ~k~G~le~A~~l~~~M~k~Gi~pd~~tynsL 795 (1060)
T PLN03218 765 ERKDDADVGLDLLSQAKEDGIKPNLVMCRCI 795 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 9999999999999999999999987655443
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-59 Score=466.77 Aligned_cols=398 Identities=28% Similarity=0.505 Sum_probs=338.3
Q ss_pred ChhchhhcCCchHHHHHHHHHHhcCCCCCcccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcC
Q 047840 1 MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVH 80 (445)
Q Consensus 1 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (445)
+|.+|++.|++++|+.+|++|...|+.||..||+.++++|+..+++. .+.+++..+.+.|+.||..+++.|+.+|++.|
T Consensus 158 li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g 236 (857)
T PLN03077 158 LVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLA-RGREVHAHVVRFGFELDVDVVNALITMYVKCG 236 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchh-hHHHHHHHHHHcCCCcccchHhHHHHHHhcCC
Confidence 57899999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred CHHHHHHHhccCCCCChhhHHHHHHHHH----------------------------------------------------
Q 047840 81 KMGTARALFDKSPDRDVVTWTTMVDGYG---------------------------------------------------- 108 (445)
Q Consensus 81 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~---------------------------------------------------- 108 (445)
+++.|..+|++|..+|..+||++|.+|+
T Consensus 237 ~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~ 316 (857)
T PLN03077 237 DVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVK 316 (857)
T ss_pred CHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 9999999999887766666666555554
Q ss_pred ------------------cCCChHHHHHHhccCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 047840 109 ------------------KMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVL 170 (445)
Q Consensus 109 ------------------~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 170 (445)
+.|++++|.++|++|..||..+||.++.+|.+.|++++|+++|++|.+.|+.||..||+.++
T Consensus 317 ~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll 396 (857)
T PLN03077 317 TGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVL 396 (857)
T ss_pred hCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHH
Confidence 45555566666666677888999999999999999999999999999999999999999999
Q ss_pred HHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCChHHHHH
Q 047840 171 TACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLE 250 (445)
Q Consensus 171 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 250 (445)
.+|++.|+++.|.++++.+.+.|+.|+..++++|+.+|++.|++++|.++|++|.++|..+|+.+|.+|++.|+.++|+.
T Consensus 397 ~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~ 476 (857)
T PLN03077 397 SACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALI 476 (857)
T ss_pred HHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCC
Q 047840 251 LFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGL 330 (445)
Q Consensus 251 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 330 (445)
+|++|.. ++.||..||+.++.+|++.|+++.+.+++..+.+. |+.++..++++|+++|+++|++++|.++|+.+
T Consensus 477 lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~---- 550 (857)
T PLN03077 477 FFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH---- 550 (857)
T ss_pred HHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CCCccceechHHHHHHHHcCCHHHHHHHHHhc----
Confidence 9999986 59999999999999999999999999999988876 87777777677777766666666666666655
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCchhHHHHHHHHHHcCChHHHHHHHHHHH-hcCCccCCcc
Q 047840 331 GGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI-TDFSTHVLSYNIYKEAGWDMEANKVRKLIS-ETGMKKKPGC 406 (445)
Q Consensus 331 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~~~~~~~~~ 406 (445)
.||..+|++++.+|++.|+.++|.++|++|.+.+. +|..+|..++.+|.+.|++++|.++|+.|. +.|+.|+..+
T Consensus 551 -~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~ 627 (857)
T PLN03077 551 -EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKH 627 (857)
T ss_pred -CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHH
Confidence 46666666666666666666666666666666543 255566666666666666666666666666 4566665443
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-55 Score=426.59 Aligned_cols=397 Identities=21% Similarity=0.351 Sum_probs=367.3
Q ss_pred CCCcccHHHHHHHhhhcCCchhHHHHHHHHHHHhc-CCCChhhHHHHHHHHHhcCCHHHHHHHhccCC----CCChhhHH
Q 047840 27 EPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFG-FGEDPFVVSSLLEFYSLVHKMGTARALFDKSP----DRDVVTWT 101 (445)
Q Consensus 27 ~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~ 101 (445)
.++..+|+.++..+.+.|++. .|..+|+.|...+ +.||..+|+.++.++.+.++++.+.+++..+. .||..+|+
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~-~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHR-EALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHH-HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 346668999999999999999 9999999998864 78999999999999999999999999998765 48999999
Q ss_pred HHHHHHHcCCChHHHHHHhccCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhH
Q 047840 102 TMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQ 181 (445)
Q Consensus 102 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 181 (445)
.++.+|++.|+++.|.++|++|.+||..+||.++.+|++.|++++|+++|++|.+.|+.||..||..++.+|++.|+.+.
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 047840 182 GLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQ 261 (445)
Q Consensus 182 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 261 (445)
+.+++..+.+.|+.||..++++|+.+|++.|++++|.++|++|.++|..+|++++.+|++.|++++|+++|++|.+.|+.
T Consensus 243 ~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~ 322 (697)
T PLN03081 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS 322 (697)
T ss_pred HHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHH
Q 047840 262 PTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGAL 341 (445)
Q Consensus 262 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 341 (445)
||..||+.++.+|++.|++++|.+++..|.+. |+.||..+|++|+++|+++|++++|.++|++|. .||..+|+.+
T Consensus 323 pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~l 397 (697)
T PLN03081 323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT-GFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNAL 397 (697)
T ss_pred CCHHHHHHHHHHHHhccchHHHHHHHHHHHHh-CCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHH
Confidence 99999999999999999999999999999987 999999999999999999999999999999994 5899999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCC-CCchhHHHHHHHHHHcCChHHHHHHHHHHHh-cCCccCCcccEEEECCeEeEEe
Q 047840 342 LSACRIYGKIEVGNRVWRKLAEMGI-TDFSTHVLSYNIYKEAGWDMEANKVRKLISE-TGMKKKPGCSVIEVNGVVEEFL 419 (445)
Q Consensus 342 ~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~~~~~~~~~~~~~~~ 419 (445)
+.+|++.|+.++|.++|++|.+.+. ++..+|..++.+|.+.|+.++|.++|+.|.+ .|+.|+..++..++. .|
T Consensus 398 I~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~----~l- 472 (697)
T PLN03081 398 IAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIE----LL- 472 (697)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHH----HH-
Confidence 9999999999999999999999775 4788999999999999999999999999975 689887665443333 22
Q ss_pred cCCCCcchhhHHHHHHHH
Q 047840 420 AGDNRHAQAGEIYRVIHS 437 (445)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~ 437 (445)
...++.+++++.+++
T Consensus 473 ---~r~G~~~eA~~~~~~ 487 (697)
T PLN03081 473 ---GREGLLDEAYAMIRR 487 (697)
T ss_pred ---HhcCCHHHHHHHHHH
Confidence 223345555555544
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-27 Score=243.70 Aligned_cols=387 Identities=11% Similarity=0.055 Sum_probs=324.4
Q ss_pred hchhhcCCchHHHHHHHHHHhcCCCCCcccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCH
Q 047840 3 RGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKM 82 (445)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (445)
..|...|++++|...|+++.+.. +.+...+..+...+...|+++ .|...++.+.+.+ +.+..++..+...+.+.|+.
T Consensus 473 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~-~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 549 (899)
T TIGR02917 473 AIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPD-DAIQRFEKVLTID-PKNLRAILALAGLYLRTGNE 549 (899)
T ss_pred HHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCH
Confidence 46778899999999999988743 234556777888888999999 8999999988765 45677888899999999999
Q ss_pred HHHHHHhccCCC---CChhhHHHHHHHHHcCCChHHHHHHhccCCC---CChhhHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 047840 83 GTARALFDKSPD---RDVVTWTTMVDGYGKMGDFENARELFEKMPE---RNAVSWSAIMAAYSRISDFKEVLSLFRQMQE 156 (445)
Q Consensus 83 ~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 156 (445)
++|...|+++.. .+...+..++..+.+.|++++|..+++.+.. .+...|..+...+...|++++|...|+++.+
T Consensus 550 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 629 (899)
T TIGR02917 550 EEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLA 629 (899)
T ss_pred HHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999988744 3556777888999999999999999998864 3677888999999999999999999999887
Q ss_pred cCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCC---CChhhHH
Q 047840 157 VGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN---KDAGAWN 233 (445)
Q Consensus 157 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~ 233 (445)
.. +.+...+..+...+...|++++|..+++++.+.. +.+...+..++..+...|++++|..+++.+.. .+...+.
T Consensus 630 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 707 (899)
T TIGR02917 630 LQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFE 707 (899)
T ss_pred hC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHH
Confidence 53 3466778888889999999999999999988765 55678888899999999999999999988765 3566778
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhc
Q 047840 234 AMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARA 313 (445)
Q Consensus 234 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 313 (445)
.+...+...|++++|+..|+++...+ |+..++..+..++.+.|++++|...++.+... .+.+...+..+...|...
T Consensus 708 ~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~ 783 (899)
T TIGR02917 708 LEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQ 783 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHC
Confidence 88888999999999999999988864 45577777888889999999999999988863 355677888888889999
Q ss_pred CChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHH
Q 047840 314 GMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRK 393 (445)
Q Consensus 314 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 393 (445)
|++++|...|+++.+.. ++++.+++.+...+...|+ ++|+..++++.+..|+++..+..++.++...|++++|.+.++
T Consensus 784 g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 861 (899)
T TIGR02917 784 KDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLR 861 (899)
T ss_pred cCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999988776 6788888999999998888 889999999999888888888889999999999999999999
Q ss_pred HHHhcCC
Q 047840 394 LISETGM 400 (445)
Q Consensus 394 ~m~~~~~ 400 (445)
++.+.+.
T Consensus 862 ~a~~~~~ 868 (899)
T TIGR02917 862 KAVNIAP 868 (899)
T ss_pred HHHhhCC
Confidence 9887654
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-27 Score=243.61 Aligned_cols=386 Identities=12% Similarity=0.046 Sum_probs=337.8
Q ss_pred hhchhhcCCchHHHHHHHHHHhcCCCCCcccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCC
Q 047840 2 IRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHK 81 (445)
Q Consensus 2 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (445)
+..+.+.|++++|+.+++.+... .+++..++..+...+...|+++ .|...++.+.+.. +.+...+..+...+...|+
T Consensus 438 ~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~-~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~ 514 (899)
T TIGR02917 438 ILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLA-KAREAFEKALSIE-PDFFPAAANLARIDIQEGN 514 (899)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHH-HHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCC
Confidence 45678899999999999999874 3557778899999999999999 9999999988754 3456677888999999999
Q ss_pred HHHHHHHhccCCC---CChhhHHHHHHHHHcCCChHHHHHHhccCCC---CChhhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 047840 82 MGTARALFDKSPD---RDVVTWTTMVDGYGKMGDFENARELFEKMPE---RNAVSWSAIMAAYSRISDFKEVLSLFRQMQ 155 (445)
Q Consensus 82 ~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 155 (445)
+++|...|+++.. .+..++..+...+.+.|+.++|..+|+++.. .+...+..++..+...|++++|.++++.+.
T Consensus 515 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 594 (899)
T TIGR02917 515 PDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAA 594 (899)
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999998754 3667888999999999999999999998854 356678889999999999999999999998
Q ss_pred HcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCC---CChhhH
Q 047840 156 EVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN---KDAGAW 232 (445)
Q Consensus 156 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~ 232 (445)
... +.+...|..+...+...|++++|...++.+.+.. +.+...+..+..++.+.|++++|...|+++.. .+..++
T Consensus 595 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 672 (899)
T TIGR02917 595 DAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQ 672 (899)
T ss_pred HcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Confidence 753 5578899999999999999999999999998875 55677888899999999999999999987754 356789
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHh
Q 047840 233 NAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLAR 312 (445)
Q Consensus 233 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 312 (445)
..++..+...|++++|..+++.+...+ +++...+..+...+...|++++|...++.+... .|+..++..++.++.+
T Consensus 673 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~ 748 (899)
T TIGR02917 673 IGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR---APSSQNAIKLHRALLA 748 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHH
Confidence 999999999999999999999998875 456778888888999999999999999999864 5666788889999999
Q ss_pred cCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHH
Q 047840 313 AGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVR 392 (445)
Q Consensus 313 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 392 (445)
.|++++|.+.++.+.+.. +.+...+..+...|...|+.++|.+.|+++.+..|+++.++..++..+...|+ .+|...+
T Consensus 749 ~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~ 826 (899)
T TIGR02917 749 SGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYA 826 (899)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHH
Confidence 999999999999998876 77889999999999999999999999999999999999999999999999999 8899999
Q ss_pred HHHHhc
Q 047840 393 KLISET 398 (445)
Q Consensus 393 ~~m~~~ 398 (445)
+++.+.
T Consensus 827 ~~~~~~ 832 (899)
T TIGR02917 827 EKALKL 832 (899)
T ss_pred HHHHhh
Confidence 988764
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.7e-23 Score=180.74 Aligned_cols=370 Identities=12% Similarity=0.109 Sum_probs=313.5
Q ss_pred chhhcCCchHHHHHHHHHHhcCCCC-CcccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhh-HHHHHHHHHhcCC
Q 047840 4 GYMQANFPKLSVFCYLDMLDMGFEP-NNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFV-VSSLLEFYSLVHK 81 (445)
Q Consensus 4 ~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~ 81 (445)
.+-..|++++|+..++.+.+.. | ....|..+..++...|+.+ .|.+.|....+ +.|+... .+.+....-..|.
T Consensus 125 ~~kerg~~~~al~~y~~aiel~--p~fida~inla~al~~~~~~~-~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Gr 199 (966)
T KOG4626|consen 125 ILKERGQLQDALALYRAAIELK--PKFIDAYINLAAALVTQGDLE-LAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGR 199 (966)
T ss_pred HHHHhchHHHHHHHHHHHHhcC--chhhHHHhhHHHHHHhcCCCc-ccHHHHHHHHh--cCcchhhhhcchhHHHHhhcc
Confidence 4557899999999999999844 5 5678999999999999999 89999888877 4565543 3345555666899
Q ss_pred HHHHHHHhccCCC--C-ChhhHHHHHHHHHcCCChHHHHHHhccCCC--C-ChhhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 047840 82 MGTARALFDKSPD--R-DVVTWTTMVDGYGKMGDFENARELFEKMPE--R-NAVSWSAIMAAYSRISDFKEVLSLFRQMQ 155 (445)
Q Consensus 82 ~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 155 (445)
+.+|...|.+..+ | -...|+.|...+...|+...|++.|++... | -...|-.|...|...+.+++|+..|.+..
T Consensus 200 l~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl 279 (966)
T KOG4626|consen 200 LEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRAL 279 (966)
T ss_pred cchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHH
Confidence 9999999887665 3 346799999999999999999999999876 4 35678999999999999999999999887
Q ss_pred HcCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCC---CChhh
Q 047840 156 EVGMKP-NESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN---KDAGA 231 (445)
Q Consensus 156 ~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~ 231 (445)
.. .| ....+..+...|...|.++.|+..|++.++.. |.-+..|+.|..++-..|++.+|.+.|.+... ....+
T Consensus 280 ~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hada 356 (966)
T KOG4626|consen 280 NL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADA 356 (966)
T ss_pred hc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHH
Confidence 64 45 46778888888999999999999999999874 34467899999999999999999999997764 35678
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHH
Q 047840 232 WNAMISGVAMNGDAKKSLELFDRMVKSGTQPT-ETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ-LEHYACVVDL 309 (445)
Q Consensus 232 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~ 309 (445)
.+.|...|...|..++|..+|....+- .|. ....+.|...|-++|++++|...|++.. .++|+ ...|+.+...
T Consensus 357 m~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt 431 (966)
T KOG4626|consen 357 MNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNT 431 (966)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchH
Confidence 899999999999999999999998774 444 4578888999999999999999999998 56887 6788999999
Q ss_pred HHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHH
Q 047840 310 LARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDME 387 (445)
Q Consensus 310 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 387 (445)
|...|+.+.|.+.+.+.+..+ +.-....+.|...|...|++.+|++.++..+++.|+.+.++-.++.++.--.+|.+
T Consensus 432 ~ke~g~v~~A~q~y~rAI~~n-Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 432 YKEMGDVSAAIQCYTRAIQIN-PTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence 999999999999999988655 44567899999999999999999999999999999988899888887766666555
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.3e-21 Score=185.00 Aligned_cols=387 Identities=11% Similarity=0.013 Sum_probs=287.6
Q ss_pred chhhcCCchHHHHHHHHHHhcCCCCCcccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHH
Q 047840 4 GYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMG 83 (445)
Q Consensus 4 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (445)
.|.+.|++++|+..|++.+. ..|+...|..+..++...|+++ .|...++...+.. +.+...+..+..+|...|+++
T Consensus 136 ~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~-~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~ 211 (615)
T TIGR00990 136 KAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWE-KVVEDTTAALELD-PDYSKALNRRANAYDGLGKYA 211 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHH-HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHH
Confidence 46778999999999999887 4588888888999999999999 9999999988854 335668888999999999999
Q ss_pred HHHHHhccCCCC---ChhhHHHHHHHHHcCCChHHHHHHhccCCC-----------------------------CCh---
Q 047840 84 TARALFDKSPDR---DVVTWTTMVDGYGKMGDFENARELFEKMPE-----------------------------RNA--- 128 (445)
Q Consensus 84 ~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------------------------~~~--- 128 (445)
+|...|...... +......++.-+........+...++.-.. .+.
T Consensus 212 eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (615)
T TIGR00990 212 DALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETG 291 (615)
T ss_pred HHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccc
Confidence 998877543221 111111111111110011112222111110 000
Q ss_pred hhHHHHHHH---HHhcCCHhHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhH
Q 047840 129 VSWSAIMAA---YSRISDFKEVLSLFRQMQEVG-MKP-NESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATA 203 (445)
Q Consensus 129 ~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 203 (445)
..+..+... ....+++++|++.|+...+.+ ..| ....+..+...+...|++++|...+++..... +.+...|..
T Consensus 292 ~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~ 370 (615)
T TIGR00990 292 NGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIK 370 (615)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHH
Confidence 011111111 123468999999999998754 234 45677888888899999999999999999874 445668888
Q ss_pred HHHHHHccCChHHHHHHhhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcH
Q 047840 204 VVDMYSKCGHVHSALSVFEGISN---KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMV 280 (445)
Q Consensus 204 l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 280 (445)
+..++...|++++|...|++... .+...|..+...+...|++++|+..|++..+.. +.+...+..+...+.+.|++
T Consensus 371 la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~ 449 (615)
T TIGR00990 371 RASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSI 449 (615)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCH
Confidence 89999999999999999987654 367789999999999999999999999998863 23566777888889999999
Q ss_pred HHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCH-----H-HHHHHHHHHHHcCChHHH
Q 047840 281 RDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDA-----N-VWGALLSACRIYGKIEVG 354 (445)
Q Consensus 281 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~-~~~~l~~~~~~~g~~~~a 354 (445)
++|...++..... .+.+...++.+..++...|++++|.+.|++.+......+. . .++..+..+...|++++|
T Consensus 450 ~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA 527 (615)
T TIGR00990 450 ASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEA 527 (615)
T ss_pred HHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHH
Confidence 9999999999863 3445788889999999999999999999998765411111 1 122222333446999999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 355 NRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
.++++++++.+|++..++..++.++.+.|++++|.+.+++..+.
T Consensus 528 ~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 528 ENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 99999999999998888999999999999999999999988754
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.7e-22 Score=183.62 Aligned_cols=270 Identities=10% Similarity=0.048 Sum_probs=177.9
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHH
Q 047840 130 SWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPN---ESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVD 206 (445)
Q Consensus 130 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 206 (445)
++..+...+...|++++|..+++.+...+..++ ...+..+...+.+.|++++|..+|+++.+.. +.+..++..++.
T Consensus 71 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~ 149 (389)
T PRK11788 71 LHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLE 149 (389)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHH
Confidence 344444444444444444444444443211111 1233444444444555555555555444432 233444444555
Q ss_pred HHHccCChHHHHHHhhcCCCCC--------hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCC
Q 047840 207 MYSKCGHVHSALSVFEGISNKD--------AGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAK 278 (445)
Q Consensus 207 ~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 278 (445)
.+.+.|++++|.+.++.+.+.+ ...+..+...+.+.|++++|...|+++.+.. +.+...+..+...+.+.|
T Consensus 150 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g 228 (389)
T PRK11788 150 IYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQG 228 (389)
T ss_pred HHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCC
Confidence 5555555555555554443211 1134456677788899999999999888753 234567777888889999
Q ss_pred cHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 047840 279 MVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358 (445)
Q Consensus 279 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 358 (445)
++++|.++++++... +......++..++.+|...|++++|...++++.+.. |+...+..++..+.+.|++++|..++
T Consensus 229 ~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l 305 (389)
T PRK11788 229 DYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALL 305 (389)
T ss_pred CHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999998864 212224567888899999999999999999988654 66666788999999999999999999
Q ss_pred HHHHHhCCCCchhHHHHHHHHHH---cCChHHHHHHHHHHHhcCCccCCc
Q 047840 359 RKLAEMGITDFSTHVLSYNIYKE---AGWDMEANKVRKLISETGMKKKPG 405 (445)
Q Consensus 359 ~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~ 405 (445)
+++++..|++. .+..++..+.. .|+..++..++++|.+.+++++|.
T Consensus 306 ~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 306 REQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 99999988765 45555555443 568999999999999999888887
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-20 Score=193.03 Aligned_cols=387 Identities=9% Similarity=0.013 Sum_probs=280.3
Q ss_pred chhhcCCchHHHHHHHHHHhcCCCCCcccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCC-hhhHH------------
Q 047840 4 GYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGED-PFVVS------------ 70 (445)
Q Consensus 4 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~------------ 70 (445)
.+...|++++|+..|++..+.. +.+...+..+...+.+.|+++ .|...++...+...... ...|.
T Consensus 278 ~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~-eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 278 AAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRA-RAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 3556788899999998888743 225667777888888888888 88888888877543221 11111
Q ss_pred HHHHHHHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHcCCChHHHHHHhccCCC--C-ChhhHHHH----------
Q 047840 71 SLLEFYSLVHKMGTARALFDKSPD---RDVVTWTTMVDGYGKMGDFENARELFEKMPE--R-NAVSWSAI---------- 134 (445)
Q Consensus 71 ~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l---------- 134 (445)
.....+.+.|++++|...|+++.. .+...+..+..++...|++++|++.|++..+ | +...+..+
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~ 435 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPE 435 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHH
Confidence 223456678888888888887654 2555677788888888888888888887764 2 22233222
Q ss_pred --------------------------------HHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHH
Q 047840 135 --------------------------------MAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQG 182 (445)
Q Consensus 135 --------------------------------~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 182 (445)
...+...|++++|++.|++..+.. +-+...+..+...+.+.|++++|
T Consensus 436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A 514 (1157)
T PRK11447 436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQA 514 (1157)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 334455677888888887777643 22455666777778888888888
Q ss_pred HHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCCCC----h---------hhHHHHHHHHHhcCChHHHH
Q 047840 183 LWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKD----A---------GAWNAMISGVAMNGDAKKSL 249 (445)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~---------~~~~~l~~~~~~~~~~~~a~ 249 (445)
...++++.+.. +.+...+..+...+...++.++|...++.+.... . ..+......+...|+.++|+
T Consensus 515 ~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~ 593 (1157)
T PRK11447 515 DALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAE 593 (1157)
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHH
Confidence 88888877653 3344455555555667788888888887765421 0 11223456677888888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 047840 250 ELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGG 329 (445)
Q Consensus 250 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 329 (445)
.+++. .+++...+..+...+.+.|++++|...|+.+.+. -+.+...+..++..|...|++++|++.++.+.+.
T Consensus 594 ~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~ 666 (1157)
T PRK11447 594 ALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT 666 (1157)
T ss_pred HHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 88772 2445566777888899999999999999999964 2445788889999999999999999999988765
Q ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCc------hhHHHHHHHHHHcCChHHHHHHHHHHHh-cCCcc
Q 047840 330 LGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDF------STHVLSYNIYKEAGWDMEANKVRKLISE-TGMKK 402 (445)
Q Consensus 330 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~~~~~ 402 (445)
. +.+..++..+..++...|++++|.+++++++...|+++ ..+..++..+...|++++|...+++... .|+.|
T Consensus 667 ~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~ 745 (1157)
T PRK11447 667 A-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITP 745 (1157)
T ss_pred C-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Confidence 4 45667788888999999999999999999998776543 3566678999999999999999888853 34543
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.4e-20 Score=175.80 Aligned_cols=356 Identities=9% Similarity=-0.002 Sum_probs=271.8
Q ss_pred hhhcCCchHHHHHHHHHHhc--CCCCCcccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCH
Q 047840 5 YMQANFPKLSVFCYLDMLDM--GFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKM 82 (445)
Q Consensus 5 ~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (445)
+.++.+|+.---.|....++ .-.-+..-...++..+.+.|++. .|..+++........ +...+..++.+....|++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~ 92 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETD-VGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQP 92 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcc-hhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCH
Confidence 45566666655555543322 11123445666778888999999 899999888886533 345556666777789999
Q ss_pred HHHHHHhccCCC--C-ChhhHHHHHHHHHcCCChHHHHHHhccCCC--C-ChhhHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 047840 83 GTARALFDKSPD--R-DVVTWTTMVDGYGKMGDFENARELFEKMPE--R-NAVSWSAIMAAYSRISDFKEVLSLFRQMQE 156 (445)
Q Consensus 83 ~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 156 (445)
+.|...|+++.. | +...+..+...+.+.|++++|...+++... | +...+..+...+...|++++|...++.+..
T Consensus 93 ~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~ 172 (656)
T PRK15174 93 DAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQ 172 (656)
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 999999998764 3 566788888999999999999999998875 4 566788889999999999999999998876
Q ss_pred cCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCC---CChhhHH
Q 047840 157 VGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN---KDAGAWN 233 (445)
Q Consensus 157 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~ 233 (445)
.... +...+..+ ..+...|++++|...++.+.+....++......+..++.+.|++++|...|++... .+...+.
T Consensus 173 ~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~ 250 (656)
T PRK15174 173 EVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRR 250 (656)
T ss_pred hCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 5322 33333333 34788899999999999988765334445555567788899999999999987654 3566788
Q ss_pred HHHHHHHhcCChHH----HHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHH
Q 047840 234 AMISGVAMNGDAKK----SLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDL 309 (445)
Q Consensus 234 ~l~~~~~~~~~~~~----a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 309 (445)
.+...+...|++++ |+..|++..... +.+...+..+...+...|++++|...++++... -+.+...+..+..+
T Consensus 251 ~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~ 327 (656)
T PRK15174 251 SLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARA 327 (656)
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 88899999999885 799999988763 235678888888899999999999999999864 23345667778889
Q ss_pred HHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 047840 310 LARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITD 368 (445)
Q Consensus 310 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 368 (445)
+.+.|++++|...++.+...+ +.+...+..+..++...|+.++|...|+++.+..|++
T Consensus 328 l~~~G~~~eA~~~l~~al~~~-P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 328 LRQVGQYTAASDEFVQLAREK-GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhh
Confidence 999999999999999988664 3333445556778889999999999999999988874
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.1e-21 Score=169.94 Aligned_cols=357 Identities=11% Similarity=0.135 Sum_probs=278.8
Q ss_pred ccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHhccCCCCCh--h-hHHHHHHHH
Q 047840 31 YTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDV--V-TWTTMVDGY 107 (445)
Q Consensus 31 ~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~-~~~~l~~~~ 107 (445)
.+|..+...+-..|+++ .|...++.+++.. +..+..|..+..++...|+.+.|...|.+..+-++ . ..+.+...+
T Consensus 117 e~ysn~aN~~kerg~~~-~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLl 194 (966)
T KOG4626|consen 117 EAYSNLANILKERGQLQ-DALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLL 194 (966)
T ss_pred HHHHHHHHHHHHhchHH-HHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHH
Confidence 45555666666666666 6666666666632 22345566666666666666666666665554322 2 122334444
Q ss_pred HcCCChHHHHHHhccCCC--C-ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCChhHHH
Q 047840 108 GKMGDFENARELFEKMPE--R-NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPN-ESGLVSVLTACAHLGAITQGL 183 (445)
Q Consensus 108 ~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~ 183 (445)
...|+..+|...+.+..+ | -...|..|...+-..|+...|+..|++... +.|+ ...|..|...|...+.++.|.
T Consensus 195 ka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~Av 272 (966)
T KOG4626|consen 195 KAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDRAV 272 (966)
T ss_pred HhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchHHH
Confidence 456666666666665543 3 245688888888889999999999998877 4555 568888999999999999999
Q ss_pred HHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 047840 184 WVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK---DAGAWNAMISGVAMNGDAKKSLELFDRMVKSGT 260 (445)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 260 (445)
..|.++.... +....++..+...|-..|.+|-|+..|++..+. =+.+|+.|..++-..|++.+|.+.|.+......
T Consensus 273 s~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p 351 (966)
T KOG4626|consen 273 SCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCP 351 (966)
T ss_pred HHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCC
Confidence 9998888764 455678888888899999999999999987653 346899999999999999999999999888532
Q ss_pred CCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCC-HHHH
Q 047840 261 QPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ-LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGD-ANVW 338 (445)
Q Consensus 261 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~ 338 (445)
-.....+.|...+...|.+++|..+|..... +.|. ....+.|...|-..|++++|+..|++.++ +.|+ ...+
T Consensus 352 -~hadam~NLgni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~ 425 (966)
T KOG4626|consen 352 -NHADAMNNLGNIYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADAL 425 (966)
T ss_pred -ccHHHHHHHHHHHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHH
Confidence 2456788899999999999999999999884 3555 56678899999999999999999999884 4555 5789
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 339 GALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 339 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
+.+...|-..|+.+.|.+.+.+++...|.-..++..|+.+|...|+..+|+.-++...+.
T Consensus 426 ~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 426 SNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL 485 (966)
T ss_pred HhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc
Confidence 999999999999999999999999999998889999999999999999999999987654
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1e-20 Score=174.09 Aligned_cols=287 Identities=13% Similarity=0.120 Sum_probs=226.7
Q ss_pred HHHHHhcCCHHHHHHHhccCCC--C-ChhhHHHHHHHHHcCCChHHHHHHhccCCCC-C------hhhHHHHHHHHHhcC
Q 047840 73 LEFYSLVHKMGTARALFDKSPD--R-DVVTWTTMVDGYGKMGDFENARELFEKMPER-N------AVSWSAIMAAYSRIS 142 (445)
Q Consensus 73 ~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~------~~~~~~l~~~~~~~~ 142 (445)
...+...|++++|...|+++.+ | +..++..+...+...|++++|..+++.+... + ...+..+...|.+.|
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 3345567888888888887764 2 4456777778888888888888888777642 1 245777888888999
Q ss_pred CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCc----hhhhhHHHHHHHccCChHHHH
Q 047840 143 DFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKN----VILATAVVDMYSKCGHVHSAL 218 (445)
Q Consensus 143 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~ 218 (445)
++++|..+|+++.+.. +++..++..++..+.+.|++++|...++.+.+.+..+. ...+..+...+.+.|++++|.
T Consensus 122 ~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 122 LLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred CHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 9999999999887753 44677888888899999999999999998887653322 124556777888899999999
Q ss_pred HHhhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhC
Q 047840 219 SVFEGISN---KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG 295 (445)
Q Consensus 219 ~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 295 (445)
..|+++.+ .+...+..+...+.+.|++++|.++++++...+......++..+..+|...|++++|...++.+.+.
T Consensus 201 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-- 278 (389)
T PRK11788 201 ALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE-- 278 (389)
T ss_pred HHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 99988754 2455778888999999999999999999987643333567888899999999999999999999864
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH---cCChHHHHHHHHHHHHhC
Q 047840 296 VEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRI---YGKIEVGNRVWRKLAEMG 365 (445)
Q Consensus 296 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~ 365 (445)
.|+...+..++..+.+.|++++|..+++++.+. .|+...++.++..+.. .|+.+++..+++++.+..
T Consensus 279 -~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~ 348 (389)
T PRK11788 279 -YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQ 348 (389)
T ss_pred -CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHH
Confidence 577777788999999999999999999998765 5888888888877664 558899999999998743
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-19 Score=186.70 Aligned_cols=352 Identities=12% Similarity=0.092 Sum_probs=248.7
Q ss_pred HHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHhccCCC--CCh---hhHH----------
Q 047840 37 IKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPD--RDV---VTWT---------- 101 (445)
Q Consensus 37 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~---~~~~---------- 101 (445)
...+...|+++ .|...++...+.. +.+...+..+..++.+.|++++|+..|++..+ |+. ..|.
T Consensus 276 G~~~~~~g~~~-~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 276 GLAAVDSGQGG-KAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHCCCHH-HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 45567889999 9999999998864 34678889999999999999999999998764 321 1121
Q ss_pred --HHHHHHHcCCChHHHHHHhccCCC--C-ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHH---
Q 047840 102 --TMVDGYGKMGDFENARELFEKMPE--R-NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTAC--- 173 (445)
Q Consensus 102 --~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~--- 173 (445)
.....+.+.|++++|...|++... | +...+..+...+...|++++|++.|++..+.. +.+...+..+...+
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~ 432 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQ 432 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 224567789999999999999875 3 56678888999999999999999999998753 22344444443333
Q ss_pred ---------------------------------------HccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCCh
Q 047840 174 ---------------------------------------AHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHV 214 (445)
Q Consensus 174 ---------------------------------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 214 (445)
...|++++|...++++.+.. |.+..++..+...|.+.|++
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~ 511 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQR 511 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 33455555555555555543 23344455555555555666
Q ss_pred HHHHHHhhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH---------HHHHHHHHhhcCCcHHH
Q 047840 215 HSALSVFEGISN---KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTET---------TFVAVLTTCTHAKMVRD 282 (445)
Q Consensus 215 ~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---------~~~~l~~~~~~~~~~~~ 282 (445)
++|...++++.. .+...+..+...+...++.++|+..++++......++.. .+......+...|+.++
T Consensus 512 ~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~e 591 (1157)
T PRK11447 512 SQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAE 591 (1157)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHH
Confidence 666555554422 133333333344445555555555555443221111111 11223445666677777
Q ss_pred HHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 047840 283 GLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLA 362 (445)
Q Consensus 283 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 362 (445)
|..+++. .+++...+..+...+.+.|++++|+..|+++++.. +.+...+..++..+...|++++|++.++.+.
T Consensus 592 A~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll 664 (1157)
T PRK11447 592 AEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLP 664 (1157)
T ss_pred HHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 7776651 14455667788889999999999999999998876 6678899999999999999999999999999
Q ss_pred HhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 047840 363 EMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETG 399 (445)
Q Consensus 363 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 399 (445)
+..|+++..+..++.++.+.|++++|.++++++....
T Consensus 665 ~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 665 ATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred ccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 9999888889999999999999999999999987654
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-19 Score=173.70 Aligned_cols=323 Identities=9% Similarity=-0.012 Sum_probs=267.0
Q ss_pred HHHHHHHHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHcCCChHHHHHHhccCCC--C-ChhhHHHHHHHHHhcCC
Q 047840 70 SSLLEFYSLVHKMGTARALFDKSPD---RDVVTWTTMVDGYGKMGDFENARELFEKMPE--R-NAVSWSAIMAAYSRISD 143 (445)
Q Consensus 70 ~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~ 143 (445)
..++..+.+.|+++.|..+++.... .+...+..++.+....|++++|...|+++.. | +...+..+...+...|+
T Consensus 46 ~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~ 125 (656)
T PRK15174 46 ILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQ 125 (656)
T ss_pred HHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC
Confidence 3456677889999999999987754 3556677777888889999999999999975 4 56678888999999999
Q ss_pred HhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhc
Q 047840 144 FKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEG 223 (445)
Q Consensus 144 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 223 (445)
+++|...|++..... +.+...+..+...+...|++++|...++.+.... +.+...+..+ ..+...|++++|...++.
T Consensus 126 ~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~ 202 (656)
T PRK15174 126 YATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLARA 202 (656)
T ss_pred HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHH
Confidence 999999999998853 3356788889999999999999999999887765 2333344333 347889999999999988
Q ss_pred CCCC----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHH----HHHHHHHhHHhhC
Q 047840 224 ISNK----DAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRD----GLNLFENMSAVYG 295 (445)
Q Consensus 224 ~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~ 295 (445)
+.+. +...+..+...+...|++++|+..++++.... +.+...+..+...+...|++++ |...++++...
T Consensus 203 ~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l-- 279 (656)
T PRK15174 203 LLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF-- 279 (656)
T ss_pred HHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--
Confidence 7553 23344555678889999999999999998864 3356777788888999999986 89999999864
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHH
Q 047840 296 VEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLS 375 (445)
Q Consensus 296 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 375 (445)
.+.+...+..+...+...|++++|...+++..... +.+...+..+..++...|++++|+..++++.+..|.++..+..+
T Consensus 280 ~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~ 358 (656)
T PRK15174 280 NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYA 358 (656)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHH
Confidence 23457788899999999999999999999998776 56677888899999999999999999999999999887667777
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcC
Q 047840 376 YNIYKEAGWDMEANKVRKLISETG 399 (445)
Q Consensus 376 ~~~~~~~g~~~~A~~~~~~m~~~~ 399 (445)
+.++...|++++|...+++..+..
T Consensus 359 a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 359 AAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC
Confidence 889999999999999999987653
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.1e-19 Score=173.81 Aligned_cols=388 Identities=7% Similarity=-0.024 Sum_probs=296.7
Q ss_pred hchhhcCCchHHHHHHHHHHhcCCCCCcccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCH
Q 047840 3 RGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKM 82 (445)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (445)
......|+.++|+.++.+..... +.+...+..+...+...|+++ .|..+++...+.. +.+...+..+..++...|++
T Consensus 23 ~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~-~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~ 99 (765)
T PRK10049 23 QIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQ-NSLTLWQKALSLE-PQNDDYQRGLILTLADAGQY 99 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCH
Confidence 44567899999999999987622 334446888889999999999 9999999988853 44566777888999999999
Q ss_pred HHHHHHhccCCC--C-ChhhHHHHHHHHHcCCChHHHHHHhccCCC--C-ChhhHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 047840 83 GTARALFDKSPD--R-DVVTWTTMVDGYGKMGDFENARELFEKMPE--R-NAVSWSAIMAAYSRISDFKEVLSLFRQMQE 156 (445)
Q Consensus 83 ~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 156 (445)
++|...+++..+ | +.. +..+..++...|+.++|+..++++.+ | +...+..+...+...++.+.|++.++....
T Consensus 100 ~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~ 178 (765)
T PRK10049 100 DEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL 178 (765)
T ss_pred HHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC
Confidence 999999998754 3 455 88888999999999999999999875 4 555667788888899999999999886653
Q ss_pred cCCCCCH------HHHHHHHHHHH-----ccCCh---hHHHHHHHHHHHc-CCCCchh-hhh----HHHHHHHccCChHH
Q 047840 157 VGMKPNE------SGLVSVLTACA-----HLGAI---TQGLWVHSYAKRY-HLEKNVI-LAT----AVVDMYSKCGHVHS 216 (445)
Q Consensus 157 ~~~~p~~------~~~~~l~~~~~-----~~~~~---~~a~~~~~~~~~~-~~~~~~~-~~~----~l~~~~~~~g~~~~ 216 (445)
.|+. .....++.... ..+++ ++|+..++.+.+. ...|+.. .+. ..+..+...|++++
T Consensus 179 ---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~e 255 (765)
T PRK10049 179 ---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKD 255 (765)
T ss_pred ---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHH
Confidence 2321 11222222222 12234 6788888888864 2222221 111 11334567799999
Q ss_pred HHHHhhcCCCCC---hh-hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHhhcCCcHHHHHHHHHH
Q 047840 217 ALSVFEGISNKD---AG-AWNAMISGVAMNGDAKKSLELFDRMVKSGTQP---TETTFVAVLTTCTHAKMVRDGLNLFEN 289 (445)
Q Consensus 217 a~~~~~~~~~~~---~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~ 289 (445)
|+..|+++.+.+ +. ....+...|...|++++|+..|+++....... .......+..++...|++++|..+++.
T Consensus 256 A~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~ 335 (765)
T PRK10049 256 VISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAH 335 (765)
T ss_pred HHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 999999987642 21 22335778999999999999999987653211 134456667788999999999999999
Q ss_pred hHHhhC----------CCCC---hhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 047840 290 MSAVYG----------VEPQ---LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNR 356 (445)
Q Consensus 290 ~~~~~~----------~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 356 (445)
+..... -.|+ ...+..+...+...|++++|++.++++.... +.+...+..+...+...|++++|++
T Consensus 336 ~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~ 414 (765)
T PRK10049 336 TINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAEN 414 (765)
T ss_pred HhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 986410 0122 2244567778889999999999999998776 6778899999999999999999999
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 357 VWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
.++++++..|++...+..++..+...|++++|+.+++.+.+.
T Consensus 415 ~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 415 ELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999764
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3e-17 Score=159.11 Aligned_cols=388 Identities=10% Similarity=-0.025 Sum_probs=287.3
Q ss_pred chhhcCCchHHHHHHHHHHhcCCCCCcc-cHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCH
Q 047840 4 GYMQANFPKLSVFCYLDMLDMGFEPNNY-TFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKM 82 (445)
Q Consensus 4 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (445)
...++|+++.|++.|++..+.. |+.. ....++..+...|+.+ .|...++.... .-+........+...|...|++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~dll~l~~~~G~~~-~A~~~~eka~~-p~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAG--PLQSGQVDDWLQIAGWAGRDQ-EVIDVYERYQS-SMNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhC--ccchhhHHHHHHHHHHcCCcH-HHHHHHHHhcc-CCCCCHHHHHHHHHHHHHcCCH
Confidence 3568999999999999998854 6652 2237788888889999 99999988872 1122223333446688889999
Q ss_pred HHHHHHhccCCC--C-ChhhHHHHHHHHHcCCChHHHHHHhccCCC--CChhhHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 047840 83 GTARALFDKSPD--R-DVVTWTTMVDGYGKMGDFENARELFEKMPE--RNAVSWSAIMAAYSRISDFKEVLSLFRQMQEV 157 (445)
Q Consensus 83 ~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 157 (445)
++|.++|+++.+ | ++..+..++..+...++.++|++.++++.. |+...+..++..+...++..+|++.++++.+.
T Consensus 119 d~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 119 DQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 999999999876 3 566777888899999999999999999986 44444444444444466776799999999986
Q ss_pred CCCCCHHHHHHHHHHHHccCChhHHHH------------------------------------------------HHHHH
Q 047840 158 GMKPNESGLVSVLTACAHLGAITQGLW------------------------------------------------VHSYA 189 (445)
Q Consensus 158 ~~~p~~~~~~~l~~~~~~~~~~~~a~~------------------------------------------------~~~~~ 189 (445)
. +-+...+..+..++.+.|-...|.+ -++.+
T Consensus 199 ~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l 277 (822)
T PRK14574 199 A-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNL 277 (822)
T ss_pred C-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHH
Confidence 4 2255555666666655553332222 22222
Q ss_pred HHc-C-CCCchhh----hhHHHHHHHccCChHHHHHHhhcCCCC----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 047840 190 KRY-H-LEKNVIL----ATAVVDMYSKCGHVHSALSVFEGISNK----DAGAWNAMISGVAMNGDAKKSLELFDRMVKSG 259 (445)
Q Consensus 190 ~~~-~-~~~~~~~----~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 259 (445)
... + .|+.... ..-.+-++...|+..++++.|+.+... ...+-..+.++|...+++++|+.+|+++....
T Consensus 278 ~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~ 357 (822)
T PRK14574 278 LTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSD 357 (822)
T ss_pred HhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcc
Confidence 221 1 1221111 123445677889999999999999853 23356678899999999999999999986643
Q ss_pred -----CCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCC----------CCC---hhHHHHHHHHHHhcCChHHHHH
Q 047840 260 -----TQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGV----------EPQ---LEHYACVVDLLARAGMVEEAEK 321 (445)
Q Consensus 260 -----~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----------~~~---~~~~~~l~~~~~~~g~~~~A~~ 321 (445)
..++......|.-++...+++++|..+++.+.+.... .|| ...+..++..+...|++.+|++
T Consensus 358 ~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~ 437 (822)
T PRK14574 358 GKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQK 437 (822)
T ss_pred ccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHH
Confidence 1223334577888999999999999999999863110 122 1233456777889999999999
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 047840 322 FIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISE 397 (445)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 397 (445)
.++++.... |-|......+...+...|.+.+|++.++.+....|.+..+....+.++...|+|.+|..+.+.+..
T Consensus 438 ~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 438 KLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 999998877 789999999999999999999999999999999999999999999999999999999998876644
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.9e-17 Score=160.80 Aligned_cols=229 Identities=11% Similarity=0.020 Sum_probs=184.0
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCC--CChhhHHHHHHHH
Q 047840 162 NESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN--KDAGAWNAMISGV 239 (445)
Q Consensus 162 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~ 239 (445)
+...|..+..++.. ++.++|...+.+..... |+......+...+...|++++|...|+++.. ++...+..+...+
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~al 552 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTA 552 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHH
Confidence 56677777777766 78888999887777663 4544444455556789999999999987654 3444566777788
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHH
Q 047840 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEA 319 (445)
Q Consensus 240 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 319 (445)
.+.|++++|...+++..+.+ +++...+..+.......|++++|...+++..+. .|+...+..+..++.+.|++++|
T Consensus 553 l~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l---~P~~~a~~~LA~~l~~lG~~deA 628 (987)
T PRK09782 553 QAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI---APSANAYVARATIYRQRHNVPAA 628 (987)
T ss_pred HHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHCCCHHHH
Confidence 89999999999999988764 223333334444455679999999999999854 67788888899999999999999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 320 EKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
...+++..... +.+...++.+..++...|+.++|+..++++++..|.++.++..++.++...|++++|...+++..+.
T Consensus 629 ~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 629 VSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 99999998877 6678888899999999999999999999999999999999999999999999999999999888754
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-17 Score=160.91 Aligned_cols=353 Identities=9% Similarity=-0.046 Sum_probs=240.7
Q ss_pred HHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHhccCCC--C-ChhhHHHHHHHHHcCC
Q 047840 35 PLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPD--R-DVVTWTTMVDGYGKMG 111 (445)
Q Consensus 35 ~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g 111 (445)
.....+.+.|+++ .|...|+..++ ..|+...|..+..+|.+.|++++|+..++...+ | +...|..+..+|...|
T Consensus 132 ~~G~~~~~~~~~~-~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg 208 (615)
T TIGR00990 132 EKGNKAYRNKDFN-KAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLG 208 (615)
T ss_pred HHHHHHHHcCCHH-HHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Confidence 4455566667777 77777776665 345566666677777777777777777766543 2 4456666777777777
Q ss_pred ChHHHHHHhccCCCC---ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCC--CCCHHH---------------------
Q 047840 112 DFENARELFEKMPER---NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGM--KPNESG--------------------- 165 (445)
Q Consensus 112 ~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~p~~~~--------------------- 165 (445)
++++|+..|...... +......++..+.. ..+............ .|....
T Consensus 209 ~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (615)
T TIGR00990 209 KYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSN 284 (615)
T ss_pred CHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccc
Confidence 777776666543211 11111111111111 111111111111100 000000
Q ss_pred ---------HHHHHHH---HHccCChhHHHHHHHHHHHcC--CCCchhhhhHHHHHHHccCChHHHHHHhhcCCCC---C
Q 047840 166 ---------LVSVLTA---CAHLGAITQGLWVHSYAKRYH--LEKNVILATAVVDMYSKCGHVHSALSVFEGISNK---D 228 (445)
Q Consensus 166 ---------~~~l~~~---~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~ 228 (445)
+..+... ....+++++|...|+.+.+.+ .+.....++.+..++...|++++|...|++.... +
T Consensus 285 ~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~ 364 (615)
T TIGR00990 285 ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRV 364 (615)
T ss_pred ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 0000000 012357889999999998765 2334567888888999999999999999987653 3
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHH
Q 047840 229 AGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVD 308 (445)
Q Consensus 229 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 308 (445)
...|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...|++.... .+.+...+..+..
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~ 441 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGV 441 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHH
Confidence 5578888899999999999999999998863 335778888889999999999999999999863 2345677778889
Q ss_pred HHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHH-------HHHHHHH
Q 047840 309 LLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVL-------SYNIYKE 381 (445)
Q Consensus 309 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-------l~~~~~~ 381 (445)
++.+.|++++|+..|++.++.. +.++..++.+...+...|++++|+..|+++++..|.+...+.. ....+..
T Consensus 442 ~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~ 520 (615)
T TIGR00990 442 TQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQW 520 (615)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHH
Confidence 9999999999999999988765 5678899999999999999999999999999988864332221 1223444
Q ss_pred cCChHHHHHHHHHHHhc
Q 047840 382 AGWDMEANKVRKLISET 398 (445)
Q Consensus 382 ~g~~~~A~~~~~~m~~~ 398 (445)
.|++++|.+++++..+.
T Consensus 521 ~~~~~eA~~~~~kAl~l 537 (615)
T TIGR00990 521 KQDFIEAENLCEKALII 537 (615)
T ss_pred hhhHHHHHHHHHHHHhc
Confidence 79999999999987764
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.8e-17 Score=161.16 Aligned_cols=362 Identities=9% Similarity=-0.030 Sum_probs=274.9
Q ss_pred hchhhcCCchHHHHHHHHHHhcCCCCCcccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCH
Q 047840 3 RGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKM 82 (445)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (445)
..+...|++++|..+|++..+.. +.+...+..+...+...|+++ .|...++.+.+.. +.+.. +..+..++...|+.
T Consensus 57 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~-eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~ 132 (765)
T PRK10049 57 VAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYD-EALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRH 132 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCH
Confidence 35778999999999999998743 334566777778889999999 9999999998863 44555 88889999999999
Q ss_pred HHHHHHhccCCC--C-ChhhHHHHHHHHHcCCChHHHHHHhccCCC-CCh------hhHHHHHHHHH-----hcCCH---
Q 047840 83 GTARALFDKSPD--R-DVVTWTTMVDGYGKMGDFENARELFEKMPE-RNA------VSWSAIMAAYS-----RISDF--- 144 (445)
Q Consensus 83 ~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~------~~~~~l~~~~~-----~~~~~--- 144 (445)
++|...++++.+ | +...+..+..++...|..++|+..++.... |+. .....++.... ..+++
T Consensus 133 ~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~a 212 (765)
T PRK10049 133 WDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIA 212 (765)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHH
Confidence 999999998765 3 555667788888899999999999998876 211 11222233222 22334
Q ss_pred hHHHHHHHHHHHc-CCCCCHH-HHH----HHHHHHHccCChhHHHHHHHHHHHcCCC-CchhhhhHHHHHHHccCChHHH
Q 047840 145 KEVLSLFRQMQEV-GMKPNES-GLV----SVLTACAHLGAITQGLWVHSYAKRYHLE-KNVILATAVVDMYSKCGHVHSA 217 (445)
Q Consensus 145 ~~a~~~~~~~~~~-~~~p~~~-~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a 217 (445)
++|++.++.+.+. ...|+.. .+. ..+.++...|++++|+..|+.+.+.+.+ |+ .....+...|...|++++|
T Consensus 213 d~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A 291 (765)
T PRK10049 213 DRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKA 291 (765)
T ss_pred HHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHH
Confidence 7889899988753 2233221 111 1134456779999999999999987632 22 2223357789999999999
Q ss_pred HHHhhcCCCCC-------hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-----------CCCH---HHHHHHHHHhhc
Q 047840 218 LSVFEGISNKD-------AGAWNAMISGVAMNGDAKKSLELFDRMVKSGT-----------QPTE---TTFVAVLTTCTH 276 (445)
Q Consensus 218 ~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-----------~p~~---~~~~~l~~~~~~ 276 (445)
...|+++...+ ......+..++...|++++|..+++++..... .|+. ..+..+...+..
T Consensus 292 ~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~ 371 (765)
T PRK10049 292 QSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKY 371 (765)
T ss_pred HHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHH
Confidence 99999875432 23455666788999999999999999987531 1332 244566777889
Q ss_pred CCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 047840 277 AKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNR 356 (445)
Q Consensus 277 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 356 (445)
.|++++|+..++++... .+.+...+..++..+...|++++|++.+++..... |.+...+...+..+...|++++|+.
T Consensus 372 ~g~~~eA~~~l~~al~~--~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~ 448 (765)
T PRK10049 372 SNDLPQAEMRARELAYN--APGNQGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDV 448 (765)
T ss_pred cCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHH
Confidence 99999999999999864 35567788899999999999999999999998766 5567788888888999999999999
Q ss_pred HHHHHHHhCCCCchhH
Q 047840 357 VWRKLAEMGITDFSTH 372 (445)
Q Consensus 357 ~~~~~~~~~~~~~~~~ 372 (445)
+++++++..|+++.+.
T Consensus 449 ~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 449 LTDDVVAREPQDPGVQ 464 (765)
T ss_pred HHHHHHHhCCCCHHHH
Confidence 9999999999987444
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.8e-16 Score=155.48 Aligned_cols=376 Identities=9% Similarity=-0.017 Sum_probs=237.6
Q ss_pred hHHHHHHHHHHhcCCCCCcccHHHH-HHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHh-cCCHHHHHHHh
Q 047840 12 KLSVFCYLDMLDMGFEPNNYTFPPL-IKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSL-VHKMGTARALF 89 (445)
Q Consensus 12 ~~A~~~~~~m~~~~~~p~~~~~~~l-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~ 89 (445)
++|.+.++ .......|+..+.... ...|...++++ .+...+..+.+.+. .+......|..+|.. .++ +.+..++
T Consensus 164 eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~-~Ai~lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~ 239 (987)
T PRK09782 164 PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWS-QADTLYNEARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQ 239 (987)
T ss_pred HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHH-HHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHh
Confidence 44455554 3332222334444444 67778888888 78888888888653 344446666667776 366 7777777
Q ss_pred ccCCCCChhhHHHHHHHHHcCCChHHHHHHhccCCC-----C--------------------------------------
Q 047840 90 DKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPE-----R-------------------------------------- 126 (445)
Q Consensus 90 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~-------------------------------------- 126 (445)
+...+.++..+..+...|.+.|+.++|.++++++.. |
T Consensus 240 ~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (987)
T PRK09782 240 SQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGAT 319 (987)
T ss_pred chhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHH
Confidence 765556788888999999999999999999888721 0
Q ss_pred -------------------------------------------------------ChhhHHHHHHHHHhcCCHhHHHHHH
Q 047840 127 -------------------------------------------------------NAVSWSAIMAAYSRISDFKEVLSLF 151 (445)
Q Consensus 127 -------------------------------------------------------~~~~~~~l~~~~~~~~~~~~a~~~~ 151 (445)
+......+.-...+.|+.++|.++|
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~ 399 (987)
T PRK09782 320 LPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLL 399 (987)
T ss_pred HHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHH
Confidence 0000001111123344555555555
Q ss_pred HHHHHc--CCCCCHHHHHHHHHHHHccCC---hhHH----------------------HHHHHHHHHc-CC-CC--chhh
Q 047840 152 RQMQEV--GMKPNESGLVSVLTACAHLGA---ITQG----------------------LWVHSYAKRY-HL-EK--NVIL 200 (445)
Q Consensus 152 ~~~~~~--~~~p~~~~~~~l~~~~~~~~~---~~~a----------------------~~~~~~~~~~-~~-~~--~~~~ 200 (445)
+..... +-.++.....-++..+.+.+. ..++ ...+...... +. ++ +...
T Consensus 400 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a 479 (987)
T PRK09782 400 LQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAA 479 (987)
T ss_pred HHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHH
Confidence 554331 112222233344555544443 1111 1111112111 11 33 5667
Q ss_pred hhHHHHHHHccCChHHHHHHhhcCCCCChhhHHHH--HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCC
Q 047840 201 ATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAM--ISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAK 278 (445)
Q Consensus 201 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 278 (445)
+..+..++.. ++.++|...+.+.....+..+..+ ...+...|++++|...|+++... .|+...+..+...+.+.|
T Consensus 480 ~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~G 556 (987)
T PRK09782 480 WNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAG 556 (987)
T ss_pred HHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCC
Confidence 7777777776 788888886665543222233333 34445788888888888887554 344455556667778888
Q ss_pred cHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 047840 279 MVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358 (445)
Q Consensus 279 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 358 (445)
+.++|...++...+. . +++...+..+.....+.|++++|...+++.++.. |+...+..+..++.+.|++++|+..+
T Consensus 557 d~~eA~~~l~qAL~l-~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l 632 (987)
T PRK09782 557 NGAARDRWLQQAEQR-G-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDL 632 (987)
T ss_pred CHHHHHHHHHHHHhc-C-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 888888888888754 2 2223333333344445688888888888887554 56778888888888888888888888
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 359 RKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 359 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
+++++..|+++..+..++.++...|++++|.+.+++..+.
T Consensus 633 ~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l 672 (987)
T PRK09782 633 RAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKG 672 (987)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 8888888888888888888888888888888888877654
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.2e-15 Score=146.31 Aligned_cols=353 Identities=11% Similarity=0.060 Sum_probs=275.7
Q ss_pred HhhhcCCchhHHHHHHHHHHHhcCCCCh--hhHHHHHHHHHhcCCHHHHHHHhccCCCCChhh-HHHH--HHHHHcCCCh
Q 047840 39 ACVILGPLENFGMFVHAHVVKFGFGEDP--FVVSSLLEFYSLVHKMGTARALFDKSPDRDVVT-WTTM--VDGYGKMGDF 113 (445)
Q Consensus 39 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~l--~~~~~~~g~~ 113 (445)
...+.|++. .|...++++.+.. |+. .++ .++..+...|+.++|...+++...|+... +..+ ...+...|++
T Consensus 43 i~~r~Gd~~-~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 43 IRARAGDTA-PVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHhCCCHH-HHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCH
Confidence 357899999 9999999998854 443 344 88888889999999999999998764443 3334 4578888999
Q ss_pred HHHHHHhccCCC--C-ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHH
Q 047840 114 ENARELFEKMPE--R-NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAK 190 (445)
Q Consensus 114 ~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 190 (445)
++|+++|+++.+ | ++..+..++..+...++.++|++.++++... .|+...+..++..+...++..+|+..++++.
T Consensus 119 d~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 119 DQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 999999999985 3 5667778888999999999999999999774 5666666555555555667767999999999
Q ss_pred HcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCC--------------------------------------------
Q 047840 191 RYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN-------------------------------------------- 226 (445)
Q Consensus 191 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------------------------------------------- 226 (445)
+.. |.+...+..+..++.+.|-...|.++..+-+.
T Consensus 197 ~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~ 275 (822)
T PRK14574 197 RLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQ 275 (822)
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHH
Confidence 986 55677777888888888877777666654331
Q ss_pred -------CChh-------hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHH
Q 047840 227 -------KDAG-------AWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSA 292 (445)
Q Consensus 227 -------~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (445)
+++. +..-.+-++...+++.++++.|+.+...|.+....+-..+..+|...+++++|..++..+..
T Consensus 276 ~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~ 355 (822)
T PRK14574 276 NLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYY 355 (822)
T ss_pred HHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhh
Confidence 0010 01123446677899999999999999888665666888999999999999999999999976
Q ss_pred hhC----CCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCC-----------CCCH---HHHHHHHHHHHHcCChHHH
Q 047840 293 VYG----VEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLG-----------GGDA---NVWGALLSACRIYGKIEVG 354 (445)
Q Consensus 293 ~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~~---~~~~~l~~~~~~~g~~~~a 354 (445)
..+ ..++......|.-+|...+++++|..+++.+.+... .||+ .....++..+.-.|+..+|
T Consensus 356 ~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~A 435 (822)
T PRK14574 356 SDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTA 435 (822)
T ss_pred ccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHH
Confidence 421 122344457788999999999999999999987321 1222 2344566778899999999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 355 NRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
++.++++....|.|+.....++.++...|++.+|++.++.....
T Consensus 436 e~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l 479 (822)
T PRK14574 436 QKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESL 479 (822)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999776544
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.5e-16 Score=132.61 Aligned_cols=212 Identities=11% Similarity=0.112 Sum_probs=125.8
Q ss_pred cCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCC---CCChhhHHHHHHHHHhcCChHHHHHHH
Q 047840 176 LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS---NKDAGAWNAMISGVAMNGDAKKSLELF 252 (445)
Q Consensus 176 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~ 252 (445)
.|++++|...|++.+...-......|| +.-.+-..|++++|+.+|-++. ..+....-.+.+.|-...++..|++++
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~ 581 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELL 581 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 345556666665555443222233333 2233455566666666665443 235555555666666666666666666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCC
Q 047840 253 DRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGG 332 (445)
Q Consensus 253 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 332 (445)
.+.... ++.|+..+..|...|-+.|+-.+|++++-.--+ -++.+..+...|...|....-+++|+.+|++.. -++
T Consensus 582 ~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaa--liq 656 (840)
T KOG2003|consen 582 MQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--LIQ 656 (840)
T ss_pred HHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--hcC
Confidence 555443 344556666666667777777777666554443 345566666666666666666777777776653 346
Q ss_pred CCHHHHHHHHHHH-HHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHH
Q 047840 333 GDANVWGALLSAC-RIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKL 394 (445)
Q Consensus 333 ~~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 394 (445)
|+..-|..++..| .+.|++++|.++++...+..|.+..+...|++.+...|.. ++.++-++
T Consensus 657 p~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~-d~key~~k 718 (840)
T KOG2003|consen 657 PNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK-DAKEYADK 718 (840)
T ss_pred ccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch-hHHHHHHH
Confidence 7777777666554 4567777777777777777777777777777776666642 34443333
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.75 E-value=8e-18 Score=146.78 Aligned_cols=258 Identities=14% Similarity=0.146 Sum_probs=116.5
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHcc
Q 047840 133 AIMAAYSRISDFKEVLSLFRQMQEVGMKPN-ESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKC 211 (445)
Q Consensus 133 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 211 (445)
.+...+.+.|++++|++++.+......+|+ ..-|..+...+...++++.|...++++...+ +.++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 446777888999999999866544432344 4444455566677889999999999998776 3366677777777 788
Q ss_pred CChHHHHHHhhcCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHhhcCCcHHHHHHHHH
Q 047840 212 GHVHSALSVFEGISN--KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSG-TQPTETTFVAVLTTCTHAKMVRDGLNLFE 288 (445)
Q Consensus 212 g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 288 (445)
+++++|..++.+.-+ +++..+...+..+...++++++.++++.+.... .+++...|..+...+.+.|+.++|...++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999998876643 466677888888999999999999999987543 34567778888888999999999999999
Q ss_pred HhHHhhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 047840 289 NMSAVYGVEP-QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT 367 (445)
Q Consensus 289 ~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 367 (445)
+..+. .| |......++..+...|+.+++.+++....+.. +.|+..|..+..++...|+.++|+..|++..+..|+
T Consensus 171 ~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 171 KALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD 246 (280)
T ss_dssp HHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccccc
Confidence 99975 55 47778889999999999999999988877655 667778999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHcCChHHHHHHHHHHH
Q 047840 368 DFSTHVLSYNIYKEAGWDMEANKVRKLIS 396 (445)
Q Consensus 368 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 396 (445)
|+.+...++.++...|+.++|.++.++..
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp -HHHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 99999999999999999999999887764
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.9e-15 Score=139.13 Aligned_cols=387 Identities=13% Similarity=0.100 Sum_probs=243.5
Q ss_pred hchhhcCCchHHHHHHHHHHhcCCCCCccc--HHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcC
Q 047840 3 RGYMQANFPKLSVFCYLDMLDMGFEPNNYT--FPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVH 80 (445)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (445)
++|-..|++++|...|-+..+.. |+... +--+...+...|+++ .+...|+.+.+.. +.+..+...|...|+..+
T Consensus 315 Rs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~~GlgQm~i~~~dle-~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~ 390 (1018)
T KOG2002|consen 315 RSYHAQGDFEKAFKYYMESLKAD--NDNFVLPLVGLGQMYIKRGDLE-ESKFCFEKVLKQL-PNNYETMKILGCLYAHSA 390 (1018)
T ss_pred HHHHhhccHHHHHHHHHHHHccC--CCCccccccchhHHHHHhchHH-HHHHHHHHHHHhC-cchHHHHHHHHhHHHhhh
Confidence 34556666666666666655432 44332 333455566666666 6666666666542 334445555555555553
Q ss_pred ----CHHHHHHHhccCCCC---ChhhHHHHHHHHHcCCChHHHHHHhccCC--------CCChhhHHHHHHHHHhcCCHh
Q 047840 81 ----KMGTARALFDKSPDR---DVVTWTTMVDGYGKMGDFENARELFEKMP--------ERNAVSWSAIMAAYSRISDFK 145 (445)
Q Consensus 81 ----~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~ 145 (445)
..+.|..++.+..++ |...|-.+...+.....+.. +..|.... ...+...|.+...+...|+++
T Consensus 391 ~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~ 469 (1018)
T KOG2002|consen 391 KKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIE 469 (1018)
T ss_pred hhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChH
Confidence 445555555555443 44455555555443333222 33333221 245566677777777777777
Q ss_pred HHHHHHHHHHHc---CCCCCH------HHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHH
Q 047840 146 EVLSLFRQMQEV---GMKPNE------SGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHS 216 (445)
Q Consensus 146 ~a~~~~~~~~~~---~~~p~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 216 (445)
.|...|...... ...+|. .+--.+....-..++++.|...|..+.+.. |.=+..|..++.+....+...+
T Consensus 470 ~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~e 548 (1018)
T KOG2002|consen 470 KALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYE 548 (1018)
T ss_pred HHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHH
Confidence 777777666543 112222 122234444555667777777777776652 2222333333333334456677
Q ss_pred HHHHhhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHhhc------------CCcH
Q 047840 217 ALSVFEGISN---KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSG-TQPTETTFVAVLTTCTH------------AKMV 280 (445)
Q Consensus 217 a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~------------~~~~ 280 (445)
|...++.... .++..++.+...+.....+..|.+-|....+.- ..+|..+...|...|.. .+..
T Consensus 549 a~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~ 628 (1018)
T KOG2002|consen 549 ASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQ 628 (1018)
T ss_pred HHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHH
Confidence 7777766554 366677777778888888888877666654432 23566666666664432 2346
Q ss_pred HHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 047840 281 RDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360 (445)
Q Consensus 281 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 360 (445)
++|+++|.++.+ .-+-|...-+-+.-.++..|++.+|..+|....+.. ..+..+|..+..+|...|++..|++.|+.
T Consensus 629 ~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~ 705 (1018)
T KOG2002|consen 629 EKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYEN 705 (1018)
T ss_pred HHHHHHHHHHHh--cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHH
Confidence 778888888875 335567777788888899999999999999987765 45667899999999999999999999999
Q ss_pred HHHhC-C-CCchhHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 361 LAEMG-I-TDFSTHVLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 361 ~~~~~-~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
..+.. + +++.+...|++++.+.|++.+|.+.+......
T Consensus 706 ~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 706 CLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred HHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 88733 3 37778889999999999999999977766543
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.6e-15 Score=126.52 Aligned_cols=386 Identities=12% Similarity=0.037 Sum_probs=271.1
Q ss_pred chhhcCCchHHHHHHHHHHhcCCCCCccc----HHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhc
Q 047840 4 GYMQANFPKLSVFCYLDMLDMGFEPNNYT----FPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLV 79 (445)
Q Consensus 4 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~----~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 79 (445)
.+.+...+.+|+.+|+-.+..-...+..+ .+.+--.+.+.|.++ .|...|+..... .|+..+--.|+-++...
T Consensus 246 i~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~-dainsfdh~m~~--~pn~~a~~nl~i~~f~i 322 (840)
T KOG2003|consen 246 IHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYD-DAINSFDHCMEE--APNFIAALNLIICAFAI 322 (840)
T ss_pred eeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccch-hhHhhHHHHHHh--CccHHhhhhhhhhheec
Confidence 46788889999999987776542223333 333444578889999 888888888774 56766655555566667
Q ss_pred CCHHHHHHHhccCCC----------------CChhhHHH-----HHHHHHcCC--ChHHHHHHhccCC----CCChh---
Q 047840 80 HKMGTARALFDKSPD----------------RDVVTWTT-----MVDGYGKMG--DFENARELFEKMP----ERNAV--- 129 (445)
Q Consensus 80 g~~~~a~~~~~~~~~----------------~~~~~~~~-----l~~~~~~~g--~~~~A~~~~~~~~----~~~~~--- 129 (445)
|+-++..+.|.++.. |+....+. .+.-.-+.+ +.++++-.--++. .|+-.
T Consensus 323 ~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~ 402 (840)
T KOG2003|consen 323 GDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGC 402 (840)
T ss_pred CcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhccc
Confidence 888888888876643 12222221 122222211 1222222222222 22110
Q ss_pred ----------hHH--------HHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHccCChhHHHHHHHHH
Q 047840 130 ----------SWS--------AIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLV--SVLTACAHLGAITQGLWVHSYA 189 (445)
Q Consensus 130 ----------~~~--------~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~~~~~~a~~~~~~~ 189 (445)
.+. .-...+.+.|+++.|++++.-+.+.+-+.-...-+ ..+..+....++..|.++-+..
T Consensus 403 dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~a 482 (840)
T KOG2003|consen 403 DWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIA 482 (840)
T ss_pred HHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHH
Confidence 011 11335789999999999998887654332222222 2333334455788898888888
Q ss_pred HHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCCCChhhHHHHH---HHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 047840 190 KRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMI---SGVAMNGDAKKSLELFDRMVKSGTQPTETT 266 (445)
Q Consensus 190 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 266 (445)
+... .-+......-.+.....|++++|...|++....|...-.+|. -.+-..|+.++|++.|-++..- ...+...
T Consensus 483 ln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~ev 560 (840)
T KOG2003|consen 483 LNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEV 560 (840)
T ss_pred hccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHH
Confidence 7654 344555444555667789999999999999988876555444 3567789999999999887553 3346778
Q ss_pred HHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 047840 267 FVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACR 346 (445)
Q Consensus 267 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 346 (445)
+..+...|....+..+|++++.+... -++.|+...+.|.+.|-+.|+-..|.+.+-+-.. -++.+..+...|..-|.
T Consensus 561 l~qianiye~led~aqaie~~~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyi 637 (840)
T KOG2003|consen 561 LVQIANIYELLEDPAQAIELLMQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYI 637 (840)
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHH
Confidence 88888999999999999999988874 4566788899999999999999999987655433 34778899999999999
Q ss_pred HcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 047840 347 IYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISE 397 (445)
Q Consensus 347 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 397 (445)
...-+++++.+|+++.-..|....+...++.++.+.|++..|.++++...+
T Consensus 638 dtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr 688 (840)
T KOG2003|consen 638 DTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR 688 (840)
T ss_pred hhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 998999999999999999998776677778889999999999999998864
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.7e-14 Score=123.16 Aligned_cols=307 Identities=14% Similarity=0.141 Sum_probs=144.7
Q ss_pred hhcCCchHHHHHHHHHHhcCCCCCcccHHHHHHHhhh--cCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHH
Q 047840 6 MQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVI--LGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMG 83 (445)
Q Consensus 6 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (445)
..+|..+.+.-+|+.|.+.|++.+...-..+++..+- ..+..-.-++.|-.|.+.|-. +..+| +.|++.
T Consensus 126 IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sW--------K~G~vA 196 (625)
T KOG4422|consen 126 ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSW--------KSGAVA 196 (625)
T ss_pred HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-ccccc--------ccccHH
Confidence 4567777888888888887776666655555443222 222221223334334333311 11222 223322
Q ss_pred HHHHHhccCCCCChhhHHHHHHHHHcCCChHHHHHHhccCCC----CChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCC
Q 047840 84 TARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPE----RNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGM 159 (445)
Q Consensus 84 ~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 159 (445)
+ ++-+....+..++..||.++++--..+.|.+++++-.. -+..+||.+|.+-.-.. -.+++.+|....+
T Consensus 197 d---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm 269 (625)
T KOG4422|consen 197 D---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKM 269 (625)
T ss_pred H---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhc
Confidence 2 23333333455566666666666666666666655543 24445555554322111 1455555655556
Q ss_pred CCCHHHHHHHHHHHHccCChhHH----HHHHHHHHHcCCCCchhhhhHHHHHHHccCChHH-HHHHhhcCCC--------
Q 047840 160 KPNESGLVSVLTACAHLGAITQG----LWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHS-ALSVFEGISN-------- 226 (445)
Q Consensus 160 ~p~~~~~~~l~~~~~~~~~~~~a----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~-------- 226 (445)
.||..|+|+++.+.++.|+++.| .+++.+|++.|+.|...+|..++..+++.++..+ |..++.++..
T Consensus 270 ~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fk 349 (625)
T KOG4422|consen 270 TPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFK 349 (625)
T ss_pred CCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCccc
Confidence 66666666666666666655433 3555556666666666666666666555555433 2222222211
Q ss_pred ----CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC----CCCC---HHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhC
Q 047840 227 ----KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSG----TQPT---ETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG 295 (445)
Q Consensus 227 ----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~----~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 295 (445)
.|..-|...+..|....+.+-|.++-.-+.... +.|+ ..-|..+....++....+.-...|+.|.-. -
T Consensus 350 p~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~-~ 428 (625)
T KOG4422|consen 350 PITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPS-A 428 (625)
T ss_pred CCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-e
Confidence 122233344444444444444444433222110 1121 112333444444444444455555554433 3
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 047840 296 VEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGG 329 (445)
Q Consensus 296 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 329 (445)
+-|+..+...++++..-.|.++-.-+++..++..
T Consensus 429 y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ 462 (625)
T KOG4422|consen 429 YFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEY 462 (625)
T ss_pred ecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHh
Confidence 3444444444444444444444444444444333
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.73 E-value=8e-14 Score=120.51 Aligned_cols=423 Identities=12% Similarity=0.109 Sum_probs=317.8
Q ss_pred cCCchHHHHHHHHHHhcCCCCCcccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHH
Q 047840 8 ANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARA 87 (445)
Q Consensus 8 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 87 (445)
++++..|..+|++.+..+ ..+...|..-+..-.+..... .|+.+++..+..-+..|. .|-.-+.+--..|++..|.+
T Consensus 86 q~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vN-hARNv~dRAvt~lPRVdq-lWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVN-HARNVWDRAVTILPRVDQ-LWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred HHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHh-HHHHHHHHHHHhcchHHH-HHHHHHHHHHHhcccHHHHH
Confidence 567788999999988744 345555666677777888888 899999998885444343 34445555567799999999
Q ss_pred HhccCC--CCChhhHHHHHHHHHcCCChHHHHHHhccCC--CCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHc-C-CCC
Q 047840 88 LFDKSP--DRDVVTWTTMVDGYGKMGDFENARELFEKMP--ERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEV-G-MKP 161 (445)
Q Consensus 88 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-~~p 161 (445)
+|++-. +|+...|++.|+-=.+-+.++.|..++++.. .|++.+|-.....--+.|+...|.++|....+. | -..
T Consensus 163 iferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~ 242 (677)
T KOG1915|consen 163 IFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEE 242 (677)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHH
Confidence 999765 4899999999999999999999999999876 488889988888888999999999999988763 1 111
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCc--hhhhhHHHHHHHccCChHHHHHHh--------hcCCCC---C
Q 047840 162 NESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKN--VILATAVVDMYSKCGHVHSALSVF--------EGISNK---D 228 (445)
Q Consensus 162 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~--------~~~~~~---~ 228 (445)
+...+.+....-.+...++.|..+|+.+++.- |.+ ...|..+...--+-|+........ +.+... |
T Consensus 243 ~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~n 321 (677)
T KOG1915|consen 243 AEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYN 321 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCC
Confidence 22344444444456677888999999888763 333 455555555555566655544433 222222 5
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-------HHHHHHHHh---hcCCcHHHHHHHHHHhHHhhCCCC
Q 047840 229 AGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTET-------TFVAVLTTC---THAKMVRDGLNLFENMSAVYGVEP 298 (445)
Q Consensus 229 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-------~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~ 298 (445)
-.+|--.+..-...|+.+...++|++.+.. ++|-.. .|.-+=-+| ....+.+.+.++++...+ -++.
T Consensus 322 YDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~--lIPH 398 (677)
T KOG1915|consen 322 YDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD--LIPH 398 (677)
T ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hcCc
Confidence 567888888888889999999999999876 565321 121111111 256889999999999985 3444
Q ss_pred ChhHHHHHHHHH----HhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHH
Q 047840 299 QLEHYACVVDLL----ARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVL 374 (445)
Q Consensus 299 ~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 374 (445)
...|+.-+--.| .++.++..|.+++...+ |.-|-..++...|..-.+.++++....++++.++.+|.+..+|..
T Consensus 399 kkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~k 476 (677)
T KOG1915|consen 399 KKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSK 476 (677)
T ss_pred ccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHH
Confidence 566666554444 47889999999999887 777999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCccCCcccEEEECCeEeEEecCCCCcchhhHHHHHHHHHHhccc
Q 047840 375 SYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHSFLKMSN 443 (445)
Q Consensus 375 l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (445)
.+..-...|+++.|..+|.-.........|..-|-.+. .|-...+.++++..+|+.+-..+++.+
T Consensus 477 yaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYI----dFEi~~~E~ekaR~LYerlL~rt~h~k 541 (677)
T KOG1915|consen 477 YAELETSLGDTDRARAIFELAISQPALDMPELLWKAYI----DFEIEEGEFEKARALYERLLDRTQHVK 541 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhh----hhhhhcchHHHHHHHHHHHHHhcccch
Confidence 99999999999999999999988766666666664333 666777888888888888887777654
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.1e-15 Score=137.84 Aligned_cols=387 Identities=13% Similarity=0.053 Sum_probs=214.2
Q ss_pred CchHHHHHHHHHHhcCCCCCcccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCC--ChhhHHHHHHHHHhcCCHHHHHH
Q 047840 10 FPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGE--DPFVVSSLLEFYSLVHKMGTARA 87 (445)
Q Consensus 10 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~ 87 (445)
.+..++.++......+ +-|+...+.|...+...|+++ .+..+...+....... -...|-.+.++|...|++++|..
T Consensus 251 s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~-~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~ 328 (1018)
T KOG2002|consen 251 SYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYE-RVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFK 328 (1018)
T ss_pred HHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHH-HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 3444555555544322 234555556666666666666 6666666665543211 12234556666666666666666
Q ss_pred HhccCCC--CC--hhhHHHHHHHHHcCCChHHHHHHhccCCC--C-ChhhHHHHHHHHHhcC----CHhHHHHHHHHHHH
Q 047840 88 LFDKSPD--RD--VVTWTTMVDGYGKMGDFENARELFEKMPE--R-NAVSWSAIMAAYSRIS----DFKEVLSLFRQMQE 156 (445)
Q Consensus 88 ~~~~~~~--~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~ 156 (445)
.|-+..+ ++ ...+-.+...+++.|+.+.+...|+++.. | +..+...|...|...+ ..+.|..++.+..+
T Consensus 329 yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~ 408 (1018)
T KOG2002|consen 329 YYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLE 408 (1018)
T ss_pred HHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHh
Confidence 6655443 22 22344556666666666666666666543 2 2333334444444332 33444444444433
Q ss_pred c-------------------------------------CCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHc---CCCC
Q 047840 157 V-------------------------------------GMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRY---HLEK 196 (445)
Q Consensus 157 ~-------------------------------------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~ 196 (445)
. +-.+.+...+.+...+...|++..|...|...... ...+
T Consensus 409 ~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~ 488 (1018)
T KOG2002|consen 409 QTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANK 488 (1018)
T ss_pred cccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCc
Confidence 2 22233344444444444444444444444444332 0111
Q ss_pred ch------hhhhHHHHHHHccCChHHHHHHhhcCCCCChh---hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 047840 197 NV------ILATAVVDMYSKCGHVHSALSVFEGISNKDAG---AWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTF 267 (445)
Q Consensus 197 ~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 267 (445)
+. .+-..+..++-..++.+.|.+.|..+.+..+. .|--+.......++..+|...++.....+ ..++..+
T Consensus 489 de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~ar 567 (1018)
T KOG2002|consen 489 DEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNAR 567 (1018)
T ss_pred cccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHH
Confidence 11 11222333334444444444444444332111 12222212222345556666666554432 1233333
Q ss_pred HHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHh------------cCChHHHHHHHHHHhcCCCCCCH
Q 047840 268 VAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLAR------------AGMVEEAEKFIEEKMGGLGGGDA 335 (445)
Q Consensus 268 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------------~g~~~~A~~~~~~~~~~~~~~~~ 335 (445)
..+...+.+...+..|..-|+.+.+.....+|+.+.-+|.+.|.+ .+..++|+++|.+.++.. +.|.
T Consensus 568 sl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~ 646 (1018)
T KOG2002|consen 568 SLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNM 646 (1018)
T ss_pred HHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchh
Confidence 334445666666666666666555543344566666566665542 245678888998888877 7788
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 047840 336 NVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGM 400 (445)
Q Consensus 336 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 400 (445)
..-|-+...++..|++.+|..+|.++.+...+.+.+|..++.+|..+|+|..|.++|+...+.-.
T Consensus 647 yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~ 711 (1018)
T KOG2002|consen 647 YAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFY 711 (1018)
T ss_pred hhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88888888899999999999999999987777777899999999999999999999888765543
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.3e-14 Score=133.11 Aligned_cols=323 Identities=12% Similarity=0.127 Sum_probs=249.9
Q ss_pred HHHHHHHhcCCHHHHHHHhccCCCC---ChhhHHHHHHHHHcCCChHHHHHHhccC---CCCChhhHHHHHHHHHhcCCH
Q 047840 71 SLLEFYSLVHKMGTARALFDKSPDR---DVVTWTTMVDGYGKMGDFENARELFEKM---PERNAVSWSAIMAAYSRISDF 144 (445)
Q Consensus 71 ~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~~~~ 144 (445)
...+.....|++++|.+++.++++. ....|.+|...|-..|+.+++...+-.. ...|...|..+.....+.|++
T Consensus 144 ~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i 223 (895)
T KOG2076|consen 144 GEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNI 223 (895)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccH
Confidence 3334444459999999999988763 5678999999999999999988776443 334778888888889999999
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhh----hHHHHHHHccCChHHHHHH
Q 047840 145 KEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILA----TAVVDMYSKCGHVHSALSV 220 (445)
Q Consensus 145 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~a~~~ 220 (445)
++|.-.|.+.++.+ +++...+---...|-+.|+...|...|.++.....+.|..-+ ...++.+...++-+.|.+.
T Consensus 224 ~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~ 302 (895)
T KOG2076|consen 224 NQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA 302 (895)
T ss_pred HHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999998864 456666666778888999999999999999887543333222 3345667777777888888
Q ss_pred hhcCCC-----CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---------------------------CHHHHH
Q 047840 221 FEGISN-----KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQP---------------------------TETTFV 268 (445)
Q Consensus 221 ~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p---------------------------~~~~~~ 268 (445)
++.... .+...++.++..|.+...++.+......+......+ +... .
T Consensus 303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~ 381 (895)
T KOG2076|consen 303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-I 381 (895)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-H
Confidence 876654 245578899999999999999998888877622222 2222 1
Q ss_pred HHHHHhhcCCcHHHHHHHHHHhHHhhCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 047840 269 AVLTTCTHAKMVRDGLNLFENMSAVYGVE--PQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACR 346 (445)
Q Consensus 269 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 346 (445)
.++-++.+.+..+....+...+... .+. -+...|.-+.++|.+.|++.+|+.+|..+.....-.+...|-.+..+|.
T Consensus 382 rl~icL~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~ 460 (895)
T KOG2076|consen 382 RLMICLVHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYM 460 (895)
T ss_pred hHhhhhhcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHH
Confidence 2333444555555555555555443 433 3467788899999999999999999999988765667889999999999
Q ss_pred HcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHH
Q 047840 347 IYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLIS 396 (445)
Q Consensus 347 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 396 (445)
..|.+++|.+.|++++...|.+..+-..|+..+.+.|++++|.+.+..+.
T Consensus 461 ~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 461 ELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999876
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.6e-14 Score=129.50 Aligned_cols=277 Identities=10% Similarity=0.081 Sum_probs=190.4
Q ss_pred CCChHHHHHHhccCCCC--Chhh-HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHccCChhHHHH
Q 047840 110 MGDFENARELFEKMPER--NAVS-WSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLV--SVLTACAHLGAITQGLW 184 (445)
Q Consensus 110 ~g~~~~A~~~~~~~~~~--~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~~~~~~a~~ 184 (445)
.|+++.|.+.+....+. ++.. |.....+..+.|+++.|.+.+.++.+. .|+..... .....+...|++++|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 57777777777665442 2222 222234446777888888888777653 44543332 33556677788888888
Q ss_pred HHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCCCC---hh--------hHHHHHHHHHhcCChHHHHHHHH
Q 047840 185 VHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKD---AG--------AWNAMISGVAMNGDAKKSLELFD 253 (445)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~--------~~~~l~~~~~~~~~~~~a~~~~~ 253 (445)
.++.+.+.. |-++.+...+...|.+.|++++|..++..+.+.. .. +|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 887777765 5566777777777888888888887777665431 11 23333433344455566666666
Q ss_pred HHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCC
Q 047840 254 RMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGG 333 (445)
Q Consensus 254 ~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 333 (445)
.+.+. .+.+......+..++...|+.++|..++++..+. +|+.... ++.+....++.+++.+..+...+.. +.
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~ 326 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-GD 326 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-CC
Confidence 65443 3446777778888888899999999988888753 4554322 2333345588888999888888766 66
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 047840 334 DANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISE 397 (445)
Q Consensus 334 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 397 (445)
|+.....+...|.+.+++++|.+.|+++.+..|++. .+..++.++.+.|+.++|.+++++-..
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY-DYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 777888888999999999999999999998888753 567888899999999999888886543
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.5e-13 Score=115.66 Aligned_cols=332 Identities=13% Similarity=0.088 Sum_probs=238.8
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHHcCCChHHHHHHhccCCCCC-hhhHHHHHHHHHh
Q 047840 62 FGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERN-AVSWSAIMAAYSR 140 (445)
Q Consensus 62 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~l~~~~~~ 140 (445)
...|.+.+-.....+.+.|....|+..|......-+..|.+.+...--..+.+.+..+...+...+ ...--.+..++..
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~e 239 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQE 239 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHH
Confidence 344544444444555667778888888777666444444444433332333333333332222211 1111234456777
Q ss_pred cCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCC--CCchhhhhHHHHHHHccCChHHHH
Q 047840 141 ISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHL--EKNVILATAVVDMYSKCGHVHSAL 218 (445)
Q Consensus 141 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~ 218 (445)
..+.+++..-.......|.+-+...-+....+.....++++|+.+|+++.+... -.|..+|..++-.--...++.---
T Consensus 240 l~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA 319 (559)
T KOG1155|consen 240 LHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLA 319 (559)
T ss_pred HHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHH
Confidence 778888888888888887665655555566666788899999999999998741 124556665543322222222111
Q ss_pred HHhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCC
Q 047840 219 SVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298 (445)
Q Consensus 219 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 298 (445)
...-.+.+--+.|..++.+-|.-.++.++|...|++..+.+.. ....|+.+.+-|...++...|.+-++.+.+ -.+.
T Consensus 320 ~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~ 396 (559)
T KOG1155|consen 320 QNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPR 396 (559)
T ss_pred HHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCch
Confidence 1122333445667777888888899999999999999886432 456677777789999999999999999995 3355
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 047840 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNI 378 (445)
Q Consensus 299 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 378 (445)
|-..|-.|..+|.-.+...-|+-+|++..... |.|...|.+|..+|.+.++.++|+..|.++...+-.+..++..++.+
T Consensus 397 DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakL 475 (559)
T KOG1155|consen 397 DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKL 475 (559)
T ss_pred hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 78899999999999999999999999998877 78999999999999999999999999999999888778899999999
Q ss_pred HHHcCChHHHHHHHHHHHh
Q 047840 379 YKEAGWDMEANKVRKLISE 397 (445)
Q Consensus 379 ~~~~g~~~~A~~~~~~m~~ 397 (445)
|.+.++.++|...+.+-.+
T Consensus 476 ye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 476 YEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHhHHHHHHHHHHHHH
Confidence 9999999999998887765
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.7e-13 Score=116.92 Aligned_cols=380 Identities=11% Similarity=0.036 Sum_probs=252.1
Q ss_pred chhhcCCchHHHHHHHHHHhcCCCCC-cccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCC-hhhHHHHHHHHHhcCC
Q 047840 4 GYMQANFPKLSVFCYLDMLDMGFEPN-NYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGED-PFVVSSLLEFYSLVHK 81 (445)
Q Consensus 4 ~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 81 (445)
-|.++|++++|++.|.+.++ ..|| +.-|.....+|...|+|+ .+.+--...++ +.|+ +..+..-.+++...|+
T Consensus 124 ~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~-~Vied~TkALE--l~P~Y~KAl~RRA~A~E~lg~ 198 (606)
T KOG0547|consen 124 KFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWE-KVIEDCTKALE--LNPDYVKALLRRASAHEQLGK 198 (606)
T ss_pred hhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHH-HHHHHHHHHhh--cCcHHHHHHHHHHHHHHhhcc
Confidence 46789999999999999998 5588 777888888889999999 66666555555 4444 3345555667777788
Q ss_pred HHHHHHHh------ccCCCCCh-hhHHHHHHHHHcCCChHHHHHHhccCCC---C-----------------------Ch
Q 047840 82 MGTARALF------DKSPDRDV-VTWTTMVDGYGKMGDFENARELFEKMPE---R-----------------------NA 128 (445)
Q Consensus 82 ~~~a~~~~------~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~-----------------------~~ 128 (445)
+++|+.-. +....... .....++ -+.| ...+.+-+..-+. | ..
T Consensus 199 ~~eal~D~tv~ci~~~F~n~s~~~~~eR~L---kk~a-~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ 274 (606)
T KOG0547|consen 199 FDEALFDVTVLCILEGFQNASIEPMAERVL---KKQA-MKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSD 274 (606)
T ss_pred HHHHHHhhhHHHHhhhcccchhHHHHHHHH---HHHH-HHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCc
Confidence 87765321 11110000 0000000 0000 1111122221000 1 11
Q ss_pred hhHHHHHHHHHh--cC---CHhHHHHHHHHHHHc---CCCCC---------HHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 047840 129 VSWSAIMAAYSR--IS---DFKEVLSLFRQMQEV---GMKPN---------ESGLVSVLTACAHLGAITQGLWVHSYAKR 191 (445)
Q Consensus 129 ~~~~~l~~~~~~--~~---~~~~a~~~~~~~~~~---~~~p~---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 191 (445)
.....+..++.. .+ .+..|...+.+-... ....+ ..+.......+.-.|+.-.+..-|+..++
T Consensus 275 ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~ 354 (606)
T KOG0547|consen 275 KSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIK 354 (606)
T ss_pred cchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHh
Confidence 112222222111 11 344444443332110 01111 12222222334556788899999999988
Q ss_pred cCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 047840 192 YHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN---KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFV 268 (445)
Q Consensus 192 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 268 (445)
.. +.+...|-.+..+|...++.++....|++..+ .++.+|..-.+.+.-.+++++|..-|++.+.... -+...|.
T Consensus 355 l~-~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~p-e~~~~~i 432 (606)
T KOG0547|consen 355 LD-PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDP-ENAYAYI 432 (606)
T ss_pred cC-cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcCh-hhhHHHH
Confidence 76 33344477778889999999999999987654 4777899988988889999999999999988632 2566777
Q ss_pred HHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCC-----CC--HHHHHHH
Q 047840 269 AVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGG-----GD--ANVWGAL 341 (445)
Q Consensus 269 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~--~~~~~~l 341 (445)
.+.-+..+.++++++...|++..+ .++..+..|+.....+...+++++|.+.|+..++.... .+ +.+--.+
T Consensus 433 Ql~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~ 510 (606)
T KOG0547|consen 433 QLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKAL 510 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhH
Confidence 777777788999999999999998 55666889999999999999999999999998755311 12 2222233
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 047840 342 LSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISE 397 (445)
Q Consensus 342 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 397 (445)
+..-.+ +++..|..+++++++.+|....++..|+..-.+.|+.++|+++|++-..
T Consensus 511 l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 511 LVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred hhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 322233 8999999999999999999888999999999999999999999998654
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.9e-12 Score=116.41 Aligned_cols=366 Identities=13% Similarity=0.089 Sum_probs=279.3
Q ss_pred cHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHhccCCC--C-ChhhHHHHHHHHH
Q 047840 32 TFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPD--R-DVVTWTTMVDGYG 108 (445)
Q Consensus 32 ~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~ 108 (445)
||..-...|.+.+.++ .++.+|...++. ++-+...|......--..|..+....+|++... | ....|-....-+-
T Consensus 518 tw~~da~~~~k~~~~~-carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w 595 (913)
T KOG0495|consen 518 TWLDDAQSCEKRPAIE-CARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKW 595 (913)
T ss_pred HHhhhHHHHHhcchHH-HHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHH
Confidence 4444455555555566 666666666653 344556666666666666777777777776654 2 3445666666677
Q ss_pred cCCChHHHHHHhccCCC--C-ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHH
Q 047840 109 KMGDFENARELFEKMPE--R-NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWV 185 (445)
Q Consensus 109 ~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 185 (445)
..|+...|..++...-+ | +...|-+-+.....+.+++.|..+|.+... ..|+...|.--++...-.++.++|.++
T Consensus 596 ~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rl 673 (913)
T KOG0495|consen 596 KAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRL 673 (913)
T ss_pred hcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHH
Confidence 78888888888877654 3 566777888888888889999998888766 457777777777777778888999999
Q ss_pred HHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 047840 186 HSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN--K-DAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQP 262 (445)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 262 (445)
+++.++.- +.-...|..+.+.+-+.++.+.|...|..-.+ | .+..|-.+...--+.|.+-.|..++++....+.+
T Consensus 674 lEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk- 751 (913)
T KOG0495|consen 674 LEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK- 751 (913)
T ss_pred HHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-
Confidence 98888762 44456777888888888899999888876554 3 4557777777777888899999999988877544
Q ss_pred CHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 047840 263 TETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALL 342 (445)
Q Consensus 263 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 342 (445)
+...|...+..=.+.|+.+.|..+..+..+ .++.+...|..-|....+.++-.+....+++. ..|+.+...+.
T Consensus 752 ~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkc-----e~dphVllaia 824 (913)
T KOG0495|consen 752 NALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKC-----EHDPHVLLAIA 824 (913)
T ss_pred cchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhc-----cCCchhHHHHH
Confidence 777888888888889999999998888886 55667777887777777777766666666554 57888888999
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhcCCccCCcccEEEEC
Q 047840 343 SACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVN 412 (445)
Q Consensus 343 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~ 412 (445)
..+....++++|.+.|.+++..+|++..+|..+...+.+.|.-++-.+++.+... -.|.-|..|.-++
T Consensus 825 ~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~--~EP~hG~~W~avS 892 (913)
T KOG0495|consen 825 KLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCET--AEPTHGELWQAVS 892 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhc--cCCCCCcHHHHHh
Confidence 9999999999999999999999999988999999999999999999999988764 3566777776555
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.8e-14 Score=129.75 Aligned_cols=277 Identities=13% Similarity=0.052 Sum_probs=193.4
Q ss_pred ChHHHHHHhccCCC--CC-hhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHccCChhHHHHH-
Q 047840 112 DFENARELFEKMPE--RN-AVSWSAIMAAYSRISDFKEVLSLFRQMQEVGM--KPNESGLVSVLTACAHLGAITQGLWV- 185 (445)
Q Consensus 112 ~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~- 185 (445)
+..+|...|.+++. +| ......+..+|...+++++|.++|+...+... .-+..+|.+.+..+-+. -+..+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 45677777777554 22 33445567778888888888888887765320 11556777766554321 12222
Q ss_pred HHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 047840 186 HSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK---DAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQP 262 (445)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 262 (445)
-+.+.+.. +..+.+|.++.++|.-.++.+.|++.|++...- ...+|+.+..-+.....+|.|...|+........
T Consensus 410 aq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r- 487 (638)
T KOG1126|consen 410 AQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR- 487 (638)
T ss_pred HHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch-
Confidence 23333333 556778888888888888888888888877654 3456777777777788888888888877543111
Q ss_pred CHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHH
Q 047840 263 TETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ-LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGAL 341 (445)
Q Consensus 263 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 341 (445)
+-..|..+...|.+.++++.|+-.|+.+.. +.|. ......+...+.+.|+.++|+.+++++.... +.|+..--.-
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~ 563 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHR 563 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHH
Confidence 223444555668888888888888888874 3453 5555667777888888888999888887766 5566655556
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 342 LSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 342 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
+..+...+++++|+..++++.+.-|++...+..++..|.+.|+.+.|..-|.-+.+.
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 667778888889999999998888888888888888999999888888877766543
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.66 E-value=6e-14 Score=126.43 Aligned_cols=278 Identities=12% Similarity=0.100 Sum_probs=220.5
Q ss_pred CHHHHHHHhccCCC--C-ChhhHHHHHHHHHcCCChHHHHHHhccCCC------CChhhHHHHHHHHHhcCCHhHHHHHH
Q 047840 81 KMGTARALFDKSPD--R-DVVTWTTMVDGYGKMGDFENARELFEKMPE------RNAVSWSAIMAAYSRISDFKEVLSLF 151 (445)
Q Consensus 81 ~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~ 151 (445)
+..+|...|++... + ...+...+..+|...+++++|.++|+.+.+ .+...|.+.+..+-+ +-++..+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence 56788888888544 2 445667788999999999999999999875 377888888876643 2333333
Q ss_pred H-HHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCCCChh
Q 047840 152 R-QMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAG 230 (445)
Q Consensus 152 ~-~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 230 (445)
. .+.+.. +-.+.+|.++.++|.-+++.+.|++.|+++.+.+ +....+|+-+..-+.....+|.|...|+.....|+.
T Consensus 410 aq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r 487 (638)
T KOG1126|consen 410 AQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR 487 (638)
T ss_pred HHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch
Confidence 3 334432 4467899999999999999999999999999875 447788888888899999999999999998887776
Q ss_pred hHHH---HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCC-ChhHHHHH
Q 047840 231 AWNA---MISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP-QLEHYACV 306 (445)
Q Consensus 231 ~~~~---l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l 306 (445)
.|++ +...|.+.++++.|+-.|++..+-+.. +.+....+...+.+.|+.++|+++++++... .| |+..--..
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l---d~kn~l~~~~~ 563 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHL---DPKNPLCKYHR 563 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhc---CCCCchhHHHH
Confidence 6555 567899999999999999999886432 6677777888888999999999999999843 33 33333345
Q ss_pred HHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCc
Q 047840 307 VDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDF 369 (445)
Q Consensus 307 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 369 (445)
+..+...++.++|+..++++++.- +.+..++..++..|.+.|+.+.|+.-|-.+.+++|...
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 566778899999999999998654 55667788888999999999999999999999999743
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=8e-13 Score=120.69 Aligned_cols=277 Identities=14% Similarity=0.036 Sum_probs=216.4
Q ss_pred cCCHHHHHHHhccCCCC--ChhhHHHH-HHHHHcCCChHHHHHHhccCCC--CChhhHH--HHHHHHHhcCCHhHHHHHH
Q 047840 79 VHKMGTARALFDKSPDR--DVVTWTTM-VDGYGKMGDFENARELFEKMPE--RNAVSWS--AIMAAYSRISDFKEVLSLF 151 (445)
Q Consensus 79 ~g~~~~a~~~~~~~~~~--~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~--~l~~~~~~~~~~~~a~~~~ 151 (445)
.|+++.|.+.+....+. ++..+..+ ..+..+.|+++.|...|.++.+ |+..... .....+...|+++.|...+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l 176 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGV 176 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 69999999998876553 23333333 4444789999999999999876 3433222 3366889999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCch-------hhhhHHHHHHHccCChHHHHHHhhcC
Q 047840 152 RQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNV-------ILATAVVDMYSKCGHVHSALSVFEGI 224 (445)
Q Consensus 152 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~ 224 (445)
+++.+.+ +-++.....+...|.+.|++++|..++..+.+.+..++. .+|..++.......+.+...++++.+
T Consensus 177 ~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~l 255 (398)
T PRK10747 177 DKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQ 255 (398)
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhC
Confidence 9998865 336788889999999999999999999999998754332 13333444444556677777787777
Q ss_pred CC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChh
Q 047840 225 SN---KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLE 301 (445)
Q Consensus 225 ~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 301 (445)
++ .++.....+...+...|+.++|.+++++..+. .|+.... ++.+....++.+++.+..+...+. .+-|..
T Consensus 256 p~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~ 329 (398)
T PRK10747 256 SRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPL 329 (398)
T ss_pred CHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh--CCCCHH
Confidence 54 47788899999999999999999999998874 4455322 233444569999999999999875 244566
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 047840 302 HYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEM 364 (445)
Q Consensus 302 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 364 (445)
.+..+...+.+.+++++|.+.|+...+. .|+...+..+..++...|+.++|.+++++....
T Consensus 330 l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 330 LWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6788999999999999999999999865 599999999999999999999999999998764
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.6e-16 Score=134.37 Aligned_cols=252 Identities=14% Similarity=0.176 Sum_probs=105.1
Q ss_pred HHHHHcCCChHHHHHHhccC-CC---C-ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 047840 104 VDGYGKMGDFENARELFEKM-PE---R-NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178 (445)
Q Consensus 104 ~~~~~~~g~~~~A~~~~~~~-~~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 178 (445)
...+.+.|++++|++++++. .. | +...|..+.......++++.|.+.|+++...+.. ++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 34444555555555555322 11 1 3333444445555566666666666666654322 34445555554 56666
Q ss_pred hhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCC-----CCChhhHHHHHHHHHhcCChHHHHHHHH
Q 047840 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS-----NKDAGAWNAMISGVAMNGDAKKSLELFD 253 (445)
Q Consensus 179 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 253 (445)
+++|..++....+. .+++..+..++..+.+.++++++..+++.+. +.+...|..+...+.+.|+.++|++.++
T Consensus 93 ~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 93 PEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred cccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 66666666555443 2345555566666777777777777766532 2356677788888889999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCC
Q 047840 254 RMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGG 333 (445)
Q Consensus 254 ~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 333 (445)
+..+..+ -|......++..+...|+.+++..+++...+. .+.++..+..+..+|...|+.++|+.+|++..... +.
T Consensus 171 ~al~~~P-~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~ 246 (280)
T PF13429_consen 171 KALELDP-DDPDARNALAWLLIDMGDYDEAREALKRLLKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PD 246 (280)
T ss_dssp HHHHH-T-T-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT
T ss_pred HHHHcCC-CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CcCHHHHHHHHHHHhcccccccccccccccccccc-cc
Confidence 9988632 25677888888899999999999999888864 25566778889999999999999999999988766 67
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 047840 334 DANVWGALLSACRIYGKIEVGNRVWRKLAE 363 (445)
Q Consensus 334 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 363 (445)
|+.....+..++...|+.++|.++.+++.+
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp -HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 889999999999999999999998887754
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.3e-12 Score=118.39 Aligned_cols=128 Identities=12% Similarity=0.047 Sum_probs=64.3
Q ss_pred CHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhH---HHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCH--HH
Q 047840 263 TETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEH---YACVVDLLARAGMVEEAEKFIEEKMGGLGGGDA--NV 337 (445)
Q Consensus 263 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~ 337 (445)
+...+..+...+...|+.++|.+++++..+. .|+... .....-.....++.+.+.+.++...+.. +.|+ ..
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p~~~~~~l 337 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-DDKPKCCI 337 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-CCChhHHH
Confidence 4445555555555555555565555555543 222221 0111111122345555555555555443 3333 44
Q ss_pred HHHHHHHHHHcCChHHHHHHHHH--HHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHH
Q 047840 338 WGALLSACRIYGKIEVGNRVWRK--LAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLI 395 (445)
Q Consensus 338 ~~~l~~~~~~~g~~~~a~~~~~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 395 (445)
..++...+.+.|++++|.+.|+. ..+..|++. .+..++..+.+.|+.++|.+++++-
T Consensus 338 l~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~-~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 338 NRALGQLLMKHGEFIEAADAFKNVAACKEQLDAN-DLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55566666666666666666663 444444332 3446666666666666666666554
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.2e-11 Score=111.37 Aligned_cols=294 Identities=10% Similarity=0.056 Sum_probs=219.2
Q ss_pred hHHHHHHHHHcCCChHHHHHHhccCCC--C-ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 047840 99 TWTTMVDGYGKMGDFENARELFEKMPE--R-NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH 175 (445)
Q Consensus 99 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 175 (445)
+|..-...|.+.+.++-|..+|....+ | +...|......--..|..+....+|++.... ++-....|....+.+-.
T Consensus 518 tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~ 596 (913)
T KOG0495|consen 518 TWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWK 596 (913)
T ss_pred HHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHh
Confidence 455555566666667777777766654 2 4556766666666778888888888888775 34455666666777788
Q ss_pred cCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCC--CChhhHHHHHHHHHhcCChHHHHHHHH
Q 047840 176 LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN--KDAGAWNAMISGVAMNGDAKKSLELFD 253 (445)
Q Consensus 176 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~ 253 (445)
.|++..|..++..+.+.. +.+..++.+-+........++.|..+|.+... ++...|..-+....-.++.++|+++++
T Consensus 597 agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllE 675 (913)
T KOG0495|consen 597 AGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLE 675 (913)
T ss_pred cCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHH
Confidence 899999999998888875 45778888888888899999999999987654 566677777777777888999999998
Q ss_pred HHHHcCCCCCH-HHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCC
Q 047840 254 RMVKSGTQPTE-TTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGG 332 (445)
Q Consensus 254 ~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 332 (445)
+..+. -|+- ..|..+...+-+.++.+.|...|..-.+ .++..+..|-.|...=-+.|.+-+|..++++..-.+ +
T Consensus 676 e~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-P 750 (913)
T KOG0495|consen 676 EALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-P 750 (913)
T ss_pred HHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-C
Confidence 88775 4443 4566666778888888888888877664 445556777777777778888999999999887777 7
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------------------------------chhHHHHHHHHHHc
Q 047840 333 GDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITD------------------------------FSTHVLSYNIYKEA 382 (445)
Q Consensus 333 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------------------------------~~~~~~l~~~~~~~ 382 (445)
.+...|...|+.-.+.|+.+.|..+..++++.-|.+ +.....++..+...
T Consensus 751 k~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e 830 (913)
T KOG0495|consen 751 KNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSE 830 (913)
T ss_pred CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHH
Confidence 788889999999999999988888877776644433 33455566667777
Q ss_pred CChHHHHHHHHHHHhcC
Q 047840 383 GWDMEANKVRKLISETG 399 (445)
Q Consensus 383 g~~~~A~~~~~~m~~~~ 399 (445)
.+++.|.+.|.+..+.+
T Consensus 831 ~k~~kar~Wf~Ravk~d 847 (913)
T KOG0495|consen 831 KKIEKAREWFERAVKKD 847 (913)
T ss_pred HHHHHHHHHHHHHHccC
Confidence 77778888777766543
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.63 E-value=8.5e-13 Score=121.19 Aligned_cols=284 Identities=13% Similarity=0.037 Sum_probs=209.3
Q ss_pred HhcCCHHHHHHHhccCCC--CCh-hhHHHHHHHHHcCCChHHHHHHhccCCC--CCh--hhHHHHHHHHHhcCCHhHHHH
Q 047840 77 SLVHKMGTARALFDKSPD--RDV-VTWTTMVDGYGKMGDFENARELFEKMPE--RNA--VSWSAIMAAYSRISDFKEVLS 149 (445)
Q Consensus 77 ~~~g~~~~a~~~~~~~~~--~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~--~~~~~l~~~~~~~~~~~~a~~ 149 (445)
...|+++.|.+.+.+..+ |++ ..+-....+..+.|+++.|.+.+.+..+ |+. ...-.....+...|+++.|..
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 357999999999987655 332 2334445677788999999999998754 443 233445788889999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhh-------HHHHHHHccCChHHHHHHhh
Q 047840 150 LFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILAT-------AVVDMYSKCGHVHSALSVFE 222 (445)
Q Consensus 150 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------~l~~~~~~~g~~~~a~~~~~ 222 (445)
.++.+.+.. +-+...+..+...+...|+++.|...+..+.+.+..+...... .++..-......+.....+.
T Consensus 175 ~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 175 GVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999999875 3367788899999999999999999999999987543332211 11111122233445555666
Q ss_pred cCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH--H-HHHHHHhhcCCcHHHHHHHHHHhHHhhCC
Q 047840 223 GISN---KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETT--F-VAVLTTCTHAKMVRDGLNLFENMSAVYGV 296 (445)
Q Consensus 223 ~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 296 (445)
..++ .++..+..+...+...|+.++|.+.+++..+.. ||... + ..........++.+.+.+.++...+...-
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~ 331 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD 331 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC
Confidence 6554 378889999999999999999999999998863 34332 1 11222234457888999999888865222
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 047840 297 EPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAE 363 (445)
Q Consensus 297 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 363 (445)
.|+.....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus 332 ~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 332 KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2221556688899999999999999999544445578998899999999999999999999999866
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.8e-12 Score=118.72 Aligned_cols=351 Identities=11% Similarity=0.055 Sum_probs=249.4
Q ss_pred hcCCchHHHHHHHHHHhcCCCCCcccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHH
Q 047840 7 QANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTAR 86 (445)
Q Consensus 7 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 86 (445)
..|+.++|.+++.+.+... +.+...|..|...|-..|+.+ .+...+-.+.. -.+.|...|..+.....+.|++++|.
T Consensus 151 arg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~e-K~l~~~llAAH-L~p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIE-KALNFWLLAAH-LNPKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHH-HHHHHHHHHHh-cCCCChHHHHHHHHHHHhcccHHHHH
Confidence 3499999999999998754 457778999999999999988 77766544333 34556788999999999999999999
Q ss_pred HHhccCCCCChh---hHHHHHHHHHcCCChHHHHHHhccCCCCCh----h----hHHHHHHHHHhcCCHhHHHHHHHHHH
Q 047840 87 ALFDKSPDRDVV---TWTTMVDGYGKMGDFENARELFEKMPERNA----V----SWSAIMAAYSRISDFKEVLSLFRQMQ 155 (445)
Q Consensus 87 ~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~----~~~~l~~~~~~~~~~~~a~~~~~~~~ 155 (445)
-+|.+..+.++. .+-.-...|-+.|+...|...|.++...++ . .--..++.+...++.+.|.+.++...
T Consensus 228 ~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~ 307 (895)
T KOG2076|consen 228 YCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL 307 (895)
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999987764333 334446778899999999999888865222 1 22334667777888899999988876
Q ss_pred Hc-CCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCC---------------------------CCchhhhhHHHHH
Q 047840 156 EV-GMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHL---------------------------EKNVILATAVVDM 207 (445)
Q Consensus 156 ~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------------------------~~~~~~~~~l~~~ 207 (445)
.. +-..+...+++++..+.+...++.+............ .++..++ .+.-+
T Consensus 308 s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~ic 386 (895)
T KOG2076|consen 308 SKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMIC 386 (895)
T ss_pred hhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhhh
Confidence 62 2344566788888888888889988887777765211 1222221 12222
Q ss_pred H--HccCChHHHHHHhhcCCC----CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHH
Q 047840 208 Y--SKCGHVHSALSVFEGISN----KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVR 281 (445)
Q Consensus 208 ~--~~~g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 281 (445)
+ .+.++..+++..|-.... .++..|.-+..+|...|++.+|+.+|..+...-..-+...|..+..+|...|..+
T Consensus 387 L~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e 466 (895)
T KOG2076|consen 387 LVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYE 466 (895)
T ss_pred hhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHH
Confidence 2 333444444444332222 2556788888899999999999999999887755556778888888899999999
Q ss_pred HHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHh--------cCCCCCCHHHHHHHHHHHHHcCChHH
Q 047840 282 DGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKM--------GGLGGGDANVWGALLSACRIYGKIEV 353 (445)
Q Consensus 282 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~ 353 (445)
+|.+.|+.+... -+.+...--.|...+.+.|+.++|.+++..+. ..+..|+..........+.+.|+.++
T Consensus 467 ~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~ 544 (895)
T KOG2076|consen 467 EAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREE 544 (895)
T ss_pred HHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHH
Confidence 999999998853 23335555677778888999999999988853 22344555556666677788888877
Q ss_pred HHHHHHHHHH
Q 047840 354 GNRVWRKLAE 363 (445)
Q Consensus 354 a~~~~~~~~~ 363 (445)
-+.....++.
T Consensus 545 fi~t~~~Lv~ 554 (895)
T KOG2076|consen 545 FINTASTLVD 554 (895)
T ss_pred HHHHHHHHHH
Confidence 6666555554
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.9e-12 Score=107.10 Aligned_cols=362 Identities=12% Similarity=0.118 Sum_probs=249.6
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHhccCCC----CChhhHHHHHHHHHcCCChHHHHHHhccCC----CCChhhHHH
Q 047840 62 FGEDPFVVSSLLEFYSLVHKMGTARALFDKSPD----RDVVTWTTMVDGYGKMGDFENARELFEKMP----ERNAVSWSA 133 (445)
Q Consensus 62 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~ 133 (445)
.+.+..++..++.+.++.-..+.|.+++++... -+..++|.+|.+-.-..+ .+++.+|. .||..|+|+
T Consensus 203 ~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNa 278 (625)
T KOG4422|consen 203 LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNA 278 (625)
T ss_pred cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHH
Confidence 456778899999999999999999999987654 377788888876544333 44555554 589999999
Q ss_pred HHHHHHhcCCHhH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhH-HHHHHHHHHHc--C--CC----Cchhh
Q 047840 134 IMAAYSRISDFKE----VLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQ-GLWVHSYAKRY--H--LE----KNVIL 200 (445)
Q Consensus 134 l~~~~~~~~~~~~----a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~--~--~~----~~~~~ 200 (445)
++.+..+.|+++. |++++.+|.+-|+.|.-.+|..+|..+++.++..+ +..++.++... | ++ .+...
T Consensus 279 lL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~F 358 (625)
T KOG4422|consen 279 LLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKF 358 (625)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHH
Confidence 9999999998765 45678889999999999999999999999888754 44555555432 2 22 24456
Q ss_pred hhHHHHHHHccCChHHHHHHhhcCCC--------C---ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 047840 201 ATAVVDMYSKCGHVHSALSVFEGISN--------K---DAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVA 269 (445)
Q Consensus 201 ~~~l~~~~~~~g~~~~a~~~~~~~~~--------~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 269 (445)
|...+..|.+..+.+-|.++-.-+.. + ...-|..+....|+....+..+..|+.|...-.-|+..+...
T Consensus 359 F~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~ 438 (625)
T KOG4422|consen 359 FQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIH 438 (625)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHH
Confidence 66777788888888888877654432 1 123456677788888899999999999988888899999999
Q ss_pred HHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcC-C-------------------hHHH-HHHHHHHhc
Q 047840 270 VLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAG-M-------------------VEEA-EKFIEEKMG 328 (445)
Q Consensus 270 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~-------------------~~~A-~~~~~~~~~ 328 (445)
++++..-.+.++-.-++|..+..- |..-+.....-+...+++.. + +.++ ...-.++..
T Consensus 439 ~lrA~~v~~~~e~ipRiw~D~~~~-ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~ 517 (625)
T KOG4422|consen 439 LLRALDVANRLEVIPRIWKDSKEY-GHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRA 517 (625)
T ss_pred HHHHHhhcCcchhHHHHHHHHHHh-hhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHh
Confidence 999999999998888888887754 43333333333333333322 1 1111 111122332
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---CCCc--hhHHHHHHHHHHcCChHHHHHHHHHHHhcCCccC
Q 047840 329 GLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMG---ITDF--STHVLSYNIYKEAGWDMEANKVRKLISETGMKKK 403 (445)
Q Consensus 329 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 403 (445)
. .-.....+...-.+.+.|..++|-+++....+.+ |..+ .+...+.+.-.+.+....|..+++-|...+....
T Consensus 518 ~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~~ 595 (625)
T KOG4422|consen 518 Q--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPIC 595 (625)
T ss_pred c--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchhh
Confidence 2 3445567777778899999999999999987633 2222 2233566677778899999999999987776543
Q ss_pred CcccEEEECCeEeEEecCCCCcchhhHHHHHHHHH
Q 047840 404 PGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHSF 438 (445)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (445)
.+ +......+.....+-.++...+.++
T Consensus 596 E~--------La~RI~e~f~iNqeq~~~ls~l~~L 622 (625)
T KOG4422|consen 596 EG--------LAQRIMEDFAINQEQKEALSNLTAL 622 (625)
T ss_pred hH--------HHHHHHHhcCcCHHHHHHHhhhhhh
Confidence 22 2222333334444445555555444
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.7e-12 Score=105.91 Aligned_cols=212 Identities=13% Similarity=0.136 Sum_probs=112.8
Q ss_pred cCCHHHHHHHhccCCCCChhhH---HHHHHHHHcCCChHHHHHHhccCCCCChh-------hHHHHHHHHHhcCCHhHHH
Q 047840 79 VHKMGTARALFDKSPDRDVVTW---TTMVDGYGKMGDFENARELFEKMPERNAV-------SWSAIMAAYSRISDFKEVL 148 (445)
Q Consensus 79 ~g~~~~a~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~ 148 (445)
+.+.++|...|-+|.+-|+.++ -+|.+.|-+.|..|.|+++-+.+.+.... ....|..-|...|-+|.|.
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 4666777777776665444433 35666666677777777776666542222 2234455566677777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCch----hhhhHHHHHHHccCChHHHHHHhhcC
Q 047840 149 SLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNV----ILATAVVDMYSKCGHVHSALSVFEGI 224 (445)
Q Consensus 149 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~ 224 (445)
.+|..+.+.+ ..-......|+..|-...+|++|+..-+++.+.+..+.. ..|..|...+....+.+.|..++.+.
T Consensus 128 ~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 128 DIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 7777666543 223445666677777777777777777666665533321 23344444444444555555555444
Q ss_pred CCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhH
Q 047840 225 SNK---DAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMS 291 (445)
Q Consensus 225 ~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (445)
... .+.+--.+...+...|+++.|.+.++...+.+..--+.+...|..+|.+.|+.++....+..+.
T Consensus 207 lqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~ 276 (389)
T COG2956 207 LQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAM 276 (389)
T ss_pred HhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 332 1222233334444455555555555555444333333444444445555555555555444444
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.3e-11 Score=105.05 Aligned_cols=279 Identities=11% Similarity=0.060 Sum_probs=154.0
Q ss_pred CCChHHHHHHhccCCCC---ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHH
Q 047840 110 MGDFENARELFEKMPER---NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVH 186 (445)
Q Consensus 110 ~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 186 (445)
.|++.+|++...+-.+. ....|-.-+.+--..|+.+.+-.++.+..+..-.++...+.+........|+...|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 45555555555554331 222333334444555666666666655554322334444445555555666666666655
Q ss_pred HHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCCCC-----------hhhHHHHHHHHHhcCChHHHHHHHHHH
Q 047840 187 SYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKD-----------AGAWNAMISGVAMNGDAKKSLELFDRM 255 (445)
Q Consensus 187 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~m 255 (445)
.++.+.+ +-++.+.....++|.+.|++.....++.++.+.. ..+|..+++-....+..+.-...|+..
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 5555554 3445555555666666666666666665555421 124555555544444444444455554
Q ss_pred HHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCH
Q 047840 256 VKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDA 335 (445)
Q Consensus 256 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 335 (445)
... .+-++..-.+++.-+.+.|+.++|.++.++..+. +..|+.. . .-.+.+-++...-.+..+...... +.++
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L~---~-~~~~l~~~d~~~l~k~~e~~l~~h-~~~p 328 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRLC---R-LIPRLRPGDPEPLIKAAEKWLKQH-PEDP 328 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhHH---H-HHhhcCCCCchHHHHHHHHHHHhC-CCCh
Confidence 333 3334444555566666667777777766666655 4444411 1 112344555555555555554443 4455
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 047840 336 NVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISE 397 (445)
Q Consensus 336 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 397 (445)
..+.+|...|.+.+.+.+|...|+.+++..|. ...+..++.++.+.|+..+|.++.++...
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 66666777777777777777777766666654 34566677777777777777776666553
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.4e-12 Score=104.74 Aligned_cols=291 Identities=11% Similarity=0.086 Sum_probs=216.2
Q ss_pred cCCChHHHHHHhccCCCCChhh---HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHccCChhHH
Q 047840 109 KMGDFENARELFEKMPERNAVS---WSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNE---SGLVSVLTACAHLGAITQG 182 (445)
Q Consensus 109 ~~g~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~~~~~~a 182 (445)
-+++.++|.+.|-+|.+.|+.+ .-+|.+.|.+.|..|.|+++.+.+.++.--+.. .....|..-|...|-++.|
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 3578899999999998765554 457889999999999999999988764211111 2344566778999999999
Q ss_pred HHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCCCChhh--------HHHHHHHHHhcCChHHHHHHHHH
Q 047840 183 LWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGA--------WNAMISGVAMNGDAKKSLELFDR 254 (445)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--------~~~l~~~~~~~~~~~~a~~~~~~ 254 (445)
+.+|..+.+.+ ..-......|+..|-...+|++|+++-+++.+.+... |--+...+....+.+.|..++.+
T Consensus 127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 99999998765 3345667789999999999999999988776543333 44455555667899999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCC
Q 047840 255 MVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGD 334 (445)
Q Consensus 255 m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 334 (445)
..+.+.+ ....-..+.+.....|+++.|.+.++.+.+. +..--..+...|..+|...|+.++...++.++.+.. +.
T Consensus 206 Alqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g 281 (389)
T COG2956 206 ALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TG 281 (389)
T ss_pred HHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CC
Confidence 8886432 2333334556688899999999999999976 433346677889999999999999999999988765 44
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHH---HcCChHHHHHHHHHHHhcCCccCCc
Q 047840 335 ANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYK---EAGWDMEANKVRKLISETGMKKKPG 405 (445)
Q Consensus 335 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~m~~~~~~~~~~ 405 (445)
...-..+...-....-.+.|...+.+-+...|.- ..+..++.... ..|.+.+...+++.|....++.+|.
T Consensus 282 ~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~-~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~ 354 (389)
T COG2956 282 ADAELMLADLIELQEGIDAAQAYLTRQLRRKPTM-RGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPR 354 (389)
T ss_pred ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcH-HHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCC
Confidence 4444555555555666788888888888888863 34444544433 2456888888999998877777664
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.4e-10 Score=100.95 Aligned_cols=382 Identities=11% Similarity=0.090 Sum_probs=289.4
Q ss_pred hhcCCchHHHHHHHHHHhcCCCCCcc-cHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHH
Q 047840 6 MQANFPKLSVFCYLDMLDMGFEPNNY-TFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGT 84 (445)
Q Consensus 6 ~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 84 (445)
.++.....|..++++... +-|-+. .|--.+..--..|+.. .|+++|+.-.. ..|+...|++.++.-.+...++.
T Consensus 118 mknk~vNhARNv~dRAvt--~lPRVdqlWyKY~ymEE~LgNi~-gaRqiferW~~--w~P~eqaW~sfI~fElRykeier 192 (677)
T KOG1915|consen 118 MKNKQVNHARNVWDRAVT--ILPRVDQLWYKYIYMEEMLGNIA-GARQIFERWME--WEPDEQAWLSFIKFELRYKEIER 192 (677)
T ss_pred HhhhhHhHHHHHHHHHHH--hcchHHHHHHHHHHHHHHhcccH-HHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHH
Confidence 466778888888888876 334333 2333444445678999 99999998776 78999999999999999999999
Q ss_pred HHHHhccC--CCCChhhHHHHHHHHHcCCChHHHHHHhccCCCC------ChhhHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 047840 85 ARALFDKS--PDRDVVTWTTMVDGYGKMGDFENARELFEKMPER------NAVSWSAIMAAYSRISDFKEVLSLFRQMQE 156 (445)
Q Consensus 85 a~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 156 (445)
|..++++. ..|++.+|--...-=.+.|+...|..+|....+. +...+.+....-..+..++.|.-+|.-.++
T Consensus 193 aR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld 272 (677)
T KOG1915|consen 193 ARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALD 272 (677)
T ss_pred HHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999985 4589999988888888999999999999887651 334456666666677889999999988877
Q ss_pred cCCCCC--HHHHHHHHHHHHccCChhHHHHH--------HHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCC
Q 047840 157 VGMKPN--ESGLVSVLTACAHLGAITQGLWV--------HSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN 226 (445)
Q Consensus 157 ~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 226 (445)
. ++.+ ...|......--+.|+....... |+...+.+ +.|-.+|--.+..-...|+.+...++|++...
T Consensus 273 ~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIa 350 (677)
T KOG1915|consen 273 H-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIA 350 (677)
T ss_pred h-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHc
Confidence 5 3333 45566666665666765544432 34444443 55666777777777888999999999987754
Q ss_pred CC--h---hhHHHHH--------HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHh----hcCCcHHHHHHHHHH
Q 047840 227 KD--A---GAWNAMI--------SGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTC----THAKMVRDGLNLFEN 289 (445)
Q Consensus 227 ~~--~---~~~~~l~--------~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~----~~~~~~~~a~~~~~~ 289 (445)
.- . ..|.-.| -.-....+.+.+.++|+...+. ++...+||.-+--.| .++.++..|.+++..
T Consensus 351 nvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~ 429 (677)
T KOG1915|consen 351 NVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGN 429 (677)
T ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 21 1 1121111 1123467899999999998884 555667776554444 367889999999999
Q ss_pred hHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--
Q 047840 290 MSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT-- 367 (445)
Q Consensus 290 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-- 367 (445)
.. |.-|...++...|..=.+.++++.+..+|++.++-+ |.|..+|......-...|+.+.|..+|+-+++...-
T Consensus 430 AI---G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldm 505 (677)
T KOG1915|consen 430 AI---GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDM 505 (677)
T ss_pred Hh---ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCccccc
Confidence 88 889999999999999999999999999999999887 778899999999889999999999999999874432
Q ss_pred CchhHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 047840 368 DFSTHVLSYNIYKEAGWDMEANKVRKLISETG 399 (445)
Q Consensus 368 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 399 (445)
....+-..++.-...|.++.|..+++++.+..
T Consensus 506 pellwkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 506 PELLWKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred HHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 23456677888888999999999999998653
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.5e-11 Score=105.56 Aligned_cols=381 Identities=14% Similarity=0.026 Sum_probs=264.6
Q ss_pred hhhcCCchHHHHHHHHHHhcCCCCCcccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHH
Q 047840 5 YMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGT 84 (445)
Q Consensus 5 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 84 (445)
+.-+.++..|.-+-++....+ -|+..--.+..++.-.|++. .|-.+...-.- ...|.........++.+..+++.
T Consensus 26 ~l~q~~y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~-ra~~lit~~~l--e~~d~~cryL~~~~l~~lk~~~~ 100 (611)
T KOG1173|consen 26 ALMQHRYKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYE-RAAHLITTYKL--EKRDIACRYLAAKCLVKLKEWDQ 100 (611)
T ss_pred HHHHHhhhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHH-HHHHHHHHhhh--hhhhHHHHHHHHHHHHHHHHHHH
Confidence 344556777777777766544 34444445777777777777 55544432211 24567777788889999999999
Q ss_pred HHHHhccCCC---------CC--------hhh----HHHH-------HHHHHcCCChHHHHHHhccCCC-----------
Q 047840 85 ARALFDKSPD---------RD--------VVT----WTTM-------VDGYGKMGDFENARELFEKMPE----------- 125 (445)
Q Consensus 85 a~~~~~~~~~---------~~--------~~~----~~~l-------~~~~~~~g~~~~A~~~~~~~~~----------- 125 (445)
|..++..... .+ ..- -+.- ...|....+.++|...|.+...
T Consensus 101 al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~ 180 (611)
T KOG1173|consen 101 ALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEK 180 (611)
T ss_pred HHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHH
Confidence 9999983210 01 000 0000 1123333344444444333210
Q ss_pred -------------------------------------------------------------CChhhHHHHHHHHHhcCCH
Q 047840 126 -------------------------------------------------------------RNAVSWSAIMAAYSRISDF 144 (445)
Q Consensus 126 -------------------------------------------------------------~~~~~~~~l~~~~~~~~~~ 144 (445)
.++........-+...+++
T Consensus 181 lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f 260 (611)
T KOG1173|consen 181 LVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRF 260 (611)
T ss_pred HHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChH
Confidence 1222233334455667788
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcC
Q 047840 145 KEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGI 224 (445)
Q Consensus 145 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 224 (445)
.+..++.+...+.. +++...+..-|..+...|+..+-..+-.++.+.- |..+.+|-++.-.|.-.|+.++|++.|.+.
T Consensus 261 ~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~seARry~SKa 338 (611)
T KOG1173|consen 261 KECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSEARRYFSKA 338 (611)
T ss_pred HHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHHHHHHHHHH
Confidence 88888888877653 5566666667777888888877777777777663 666788888888888889999999999876
Q ss_pred CCCC---hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCC-Ch
Q 047840 225 SNKD---AGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP-QL 300 (445)
Q Consensus 225 ~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~ 300 (445)
..-| ...|-.+...|+-.|.-++|+..+....+. ++-..-.+--+.--|.+.++.+.|.++|.+... +-| |+
T Consensus 339 t~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a---i~P~Dp 414 (611)
T KOG1173|consen 339 TTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALA---IAPSDP 414 (611)
T ss_pred hhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHh---cCCCcc
Confidence 6543 458999999999999999999988877664 111112222344458888999999999999884 444 56
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHhcC----C--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHH
Q 047840 301 EHYACVVDLLARAGMVEEAEKFIEEKMGG----L--GGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVL 374 (445)
Q Consensus 301 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 374 (445)
...+-+.-.....+.+.+|..+|+..+.. + ...-..+++.|+.+|.+.+++++|+..+++.+...|.++.++..
T Consensus 415 lv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~as 494 (611)
T KOG1173|consen 415 LVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHAS 494 (611)
T ss_pred hhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHH
Confidence 66677766677789999999999876521 1 11234578999999999999999999999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHH
Q 047840 375 SYNIYKEAGWDMEANKVRKLIS 396 (445)
Q Consensus 375 l~~~~~~~g~~~~A~~~~~~m~ 396 (445)
++-+|...|+++.|.+.|.+..
T Consensus 495 ig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 495 IGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHHHHHHhcChHHHHHHHHHHH
Confidence 9999999999999999888754
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.55 E-value=9.2e-12 Score=107.73 Aligned_cols=283 Identities=12% Similarity=0.088 Sum_probs=156.6
Q ss_pred HHHHhcCCHHHHHHHhccCCC---C-ChhhHHHHHHHHHcCCChHHHHHHhccCCCC------ChhhHHHHHHHHHhcCC
Q 047840 74 EFYSLVHKMGTARALFDKSPD---R-DVVTWTTMVDGYGKMGDFENARELFEKMPER------NAVSWSAIMAAYSRISD 143 (445)
Q Consensus 74 ~~~~~~g~~~~a~~~~~~~~~---~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~ 143 (445)
.++......+++..-.+.... | +...-+....+.....++++|+.+|+++.+. |..+|..++-.- ..+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~--~~~ 312 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVK--NDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHH--hhh
Confidence 444444555555554443332 1 2222222333344556677777777766542 455565554332 221
Q ss_pred HhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhc
Q 047840 144 FKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEG 223 (445)
Q Consensus 144 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 223 (445)
.. +..+-+-...=-+--+.|+.++.+-|+-.++.++|..+|++.++.+ +....+|+-+.+-|....+...|.+.++.
T Consensus 313 sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 313 SK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred HH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 11 1111111110012234466666666666777777777777777665 44556666666667777777777777765
Q ss_pred CCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCCh
Q 047840 224 ISN---KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300 (445)
Q Consensus 224 ~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 300 (445)
..+ .|-.+|-.+.++|.-.+...-|+-.|++..... +-|...|.+|..+|.+.++.++|++.|...... -..+.
T Consensus 390 Avdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~--~dte~ 466 (559)
T KOG1155|consen 390 AVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILL--GDTEG 466 (559)
T ss_pred HHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc--cccch
Confidence 443 355666677777777777777777777666642 225666777777777777777777777776652 23345
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHhc----CCCC-C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 047840 301 EHYACVVDLLARAGMVEEAEKFIEEKMG----GLGG-G-DANVWGALLSACRIYGKIEVGNRVWRKLAEM 364 (445)
Q Consensus 301 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 364 (445)
..+..|.+.|-+.++.++|...|...++ .|.. | ......-|..-+.+.+++++|.........-
T Consensus 467 ~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 467 SALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 6666677777777777777666665433 1211 2 1122223445555666666666555555443
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.7e-12 Score=106.75 Aligned_cols=198 Identities=12% Similarity=0.040 Sum_probs=149.7
Q ss_pred hhhhhHHHHHHHccCChHHHHHHhhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 047840 198 VILATAVVDMYSKCGHVHSALSVFEGISN---KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTC 274 (445)
Q Consensus 198 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 274 (445)
...+..+...+...|++++|...+++... .+...+..+...+...|++++|.+.+++..+... .+...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHH
Confidence 34455556666666666666666665432 2345666677778888888888888888777532 3556677777778
Q ss_pred hcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHH
Q 047840 275 THAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVG 354 (445)
Q Consensus 275 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 354 (445)
...|++++|...++..............+..+..++...|++++|...+.+..... +.+...+..+...+...|++++|
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHH
Confidence 88889999998888887541222334566677888889999999999999988765 45677888888999999999999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 047840 355 NRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISE 397 (445)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 397 (445)
...++++.+..|.++..+..++..+...|+.++|..+.+.+.+
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999988777777888888899999999999998887754
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.2e-11 Score=115.01 Aligned_cols=270 Identities=15% Similarity=0.092 Sum_probs=149.0
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHhccCCCC
Q 047840 16 FCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDR 95 (445)
Q Consensus 16 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 95 (445)
+++-.+...|+.|+..||..+|..||..|+.+ .|- +|..|.....+.+...++.++......++.+.+. .|
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdie-aat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep 81 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIE-AAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EP 81 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCc-ccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CC
Confidence 56778888999999999999999999999999 777 9999988888888999999999888888877665 77
Q ss_pred ChhhHHHHHHHHHcCCChHHHHHHhccCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHH-HcCCCCCHHHHHHHHHHHH
Q 047840 96 DVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQ-EVGMKPNESGLVSVLTACA 174 (445)
Q Consensus 96 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~p~~~~~~~l~~~~~ 174 (445)
.+.+|..|..+|...||...- +..++ ....+...+...|.-.....++.... ..+.-||..+. +.-..
T Consensus 82 ~aDtyt~Ll~ayr~hGDli~f-e~veq-------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~---illlv 150 (1088)
T KOG4318|consen 82 LADTYTNLLKAYRIHGDLILF-EVVEQ-------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENA---ILLLV 150 (1088)
T ss_pred chhHHHHHHHHHHhccchHHH-HHHHH-------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHH---HHHHH
Confidence 888999999999999987652 22111 11122223333333333333332221 11122232211 11112
Q ss_pred ccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHc-cCChHHHHHHhhcCCC-CChhhHHHHHHHHHhcCChHHHHHHH
Q 047840 175 HLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSK-CGHVHSALSVFEGISN-KDAGAWNAMISGVAMNGDAKKSLELF 252 (445)
Q Consensus 175 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~ 252 (445)
..|-++.+.+++..+--.... .+... .++-... ...+++-........+ +++.++.+.+..-...|+.+.|..++
T Consensus 151 ~eglwaqllkll~~~Pvsa~~-~p~~v--fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll 227 (1088)
T KOG4318|consen 151 LEGLWAQLLKLLAKVPVSAWN-APFQV--FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLL 227 (1088)
T ss_pred HHHHHHHHHHHHhhCCccccc-chHHH--HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHH
Confidence 222233333333222111000 00000 0111111 1112222222222222 45555666666555666666666666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHh
Q 047840 253 DRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLAR 312 (445)
Q Consensus 253 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 312 (445)
.+|.+.|++.+.+-|..++-+ .++..-++.++.-|... |+.|+..|+...+..+..
T Consensus 228 ~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~-gv~p~seT~adyvip~l~ 283 (1088)
T KOG4318|consen 228 YEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEK-GVQPGSETQADYVIPQLS 283 (1088)
T ss_pred HHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHh-cCCCCcchhHHHHHhhhc
Confidence 666666665555555555444 44555555555555544 666666665544444444
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=7e-11 Score=100.70 Aligned_cols=254 Identities=12% Similarity=0.033 Sum_probs=210.6
Q ss_pred hcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHH
Q 047840 140 RISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALS 219 (445)
Q Consensus 140 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 219 (445)
-.|+|.+|.++..+-.+.+-. ....|..-..+....|+.+.+-.++.++-+..-.++..+.-+..+.....|+++.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 369999999999998776633 3445666677788999999999999999987546677777888888999999999998
Q ss_pred HhhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHhhcCCcHHHHHHHHHH
Q 047840 220 VFEGIS---NKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTE-------TTFVAVLTTCTHAKMVRDGLNLFEN 289 (445)
Q Consensus 220 ~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-------~~~~~l~~~~~~~~~~~~a~~~~~~ 289 (445)
-+.++. ..++.......++|.+.|++.....++.++.+.|.--++ .++..++.-....+..+.-...|+.
T Consensus 175 ~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 175 NVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 877654 457889999999999999999999999999999875554 3677778777777777777778888
Q ss_pred hHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCc
Q 047840 290 MSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDF 369 (445)
Q Consensus 290 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 369 (445)
... ..+-++..-.+++.-+.++|+.++|.++..+..+.+..|. ....-.+.+.++...-++..++-....|+++
T Consensus 255 ~pr--~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p 328 (400)
T COG3071 255 QPR--KLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDP 328 (400)
T ss_pred ccH--HhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCCCh
Confidence 876 4456677777889999999999999999999988875555 2233456788899999999999999999999
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 047840 370 STHVLSYNIYKEAGWDMEANKVRKLISETGM 400 (445)
Q Consensus 370 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 400 (445)
..+..|+..|.+.+.|.+|.+.|+...+.+.
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~ 359 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKLRP 359 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999997766544
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.8e-11 Score=114.60 Aligned_cols=263 Identities=12% Similarity=-0.006 Sum_probs=183.3
Q ss_pred ChhhHHHHHHHHHh-----cCCHhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH---------ccCChhHHHHHHHHHHH
Q 047840 127 NAVSWSAIMAAYSR-----ISDFKEVLSLFRQMQEVGMKPN-ESGLVSVLTACA---------HLGAITQGLWVHSYAKR 191 (445)
Q Consensus 127 ~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~ 191 (445)
+...|...+.+... .+++++|...|++..+. .|+ ...|..+..++. ..+++++|...++++.+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 44555555555322 23467999999998875 454 455555554443 23457899999999998
Q ss_pred cCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 047840 192 YHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN---KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFV 268 (445)
Q Consensus 192 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 268 (445)
.+ +.+...+..+...+...|++++|...|++..+ .+...+..+...+...|++++|+..+++..+.+.. +...+.
T Consensus 333 ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~ 410 (553)
T PRK12370 333 LD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGI 410 (553)
T ss_pred cC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHH
Confidence 86 55778888888889999999999999988654 34567888888999999999999999999886433 222333
Q ss_pred HHHHHhhcCCcHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 047840 269 AVLTTCTHAKMVRDGLNLFENMSAVYGVEP-QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRI 347 (445)
Q Consensus 269 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 347 (445)
.++..+...|++++|...++++... . +| +...+..+..++...|++++|...+.++.... +.+....+.+...+..
T Consensus 411 ~~~~~~~~~g~~eeA~~~~~~~l~~-~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 411 TKLWITYYHTGIDDAIRLGDELRSQ-H-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHh-c-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhc
Confidence 3444566678999999999988753 2 34 34556777888889999999999998875443 3334455666666676
Q ss_pred cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 047840 348 YGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETG 399 (445)
Q Consensus 348 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 399 (445)
.| +.|...++++.+..-..+.........|.-.|+.+.+... +++.+.+
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 66 4788877777663322222222366677777887777766 7777654
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.44 E-value=9e-11 Score=99.77 Aligned_cols=202 Identities=11% Similarity=0.081 Sum_probs=124.4
Q ss_pred hhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHH
Q 047840 128 AVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDM 207 (445)
Q Consensus 128 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 207 (445)
...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~------ 102 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVL------ 102 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHH------
Confidence 4456666677777777777777777766542 2245555666666666667777666666666543 2233333
Q ss_pred HHccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHhhcCCcHHHHHHH
Q 047840 208 YSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQ-PTETTFVAVLTTCTHAKMVRDGLNL 286 (445)
Q Consensus 208 ~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~ 286 (445)
..+...+...|++++|...+++....... .....+..+...+...|++++|...
T Consensus 103 -------------------------~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (234)
T TIGR02521 103 -------------------------NNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKY 157 (234)
T ss_pred -------------------------HHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 33444455555555555555555543211 1233455556666777777777777
Q ss_pred HHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 047840 287 FENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMG 365 (445)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 365 (445)
+++.... .+.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|+.++|..+.+.+....
T Consensus 158 ~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 158 LTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred HHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 7777653 22335566667777777788888887777776653 4556666666777777777777777777665543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.7e-11 Score=101.48 Aligned_cols=227 Identities=10% Similarity=0.014 Sum_probs=170.4
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCC--C-ChhhHHHHHHHHHhcC
Q 047840 167 VSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN--K-DAGAWNAMISGVAMNG 243 (445)
Q Consensus 167 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~ 243 (445)
+.+.++|.+.|.+.+|++.++..++. .|.+.+|..|..+|.+..++..|+.+|.+-.+ | |+....-+...+-..+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH
Confidence 45666677777777777777666665 45555666667777777777777777766554 2 3333344556677778
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 047840 244 DAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFI 323 (445)
Q Consensus 244 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 323 (445)
+.++|.++|+...+.. +.+......+...|.-.++++-|..+|+++.+. |+ .++..|+.+.-+|.-.++++-++.-|
T Consensus 305 ~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~-~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GA-QSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHh-cC-CChHHHhhHHHHHHhhcchhhhHHHH
Confidence 8888888888887753 335566666677777888888888888888876 64 45677888888888888888888888
Q ss_pred HHHhcCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 324 EEKMGGLGGGD--ANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 324 ~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
++....--.|+ ..+|-.+.......|++..|.+.|+-.+..++++...++.|+..-.+.|++++|..+++.....
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 88776543454 3568888888888899999999999999999998889999999999999999999998877653
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.4e-10 Score=101.18 Aligned_cols=234 Identities=16% Similarity=0.190 Sum_probs=174.7
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHHHHHc-----C-CCCch-hhhhHHHHHHHccCChHHHHHHhhcCCC-------C-
Q 047840 163 ESGLVSVLTACAHLGAITQGLWVHSYAKRY-----H-LEKNV-ILATAVVDMYSKCGHVHSALSVFEGISN-------K- 227 (445)
Q Consensus 163 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~- 227 (445)
..+...+...|...|+++.|+.+++...+. | ..|.. ...+.+...|...+++++|..+|+++.. +
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 456667888899999999999998888765 2 12232 3334577788899999999888887643 1
Q ss_pred ---ChhhHHHHHHHHHhcCChHHHHHHHHHHHHc-----C-CCCCHH-HHHHHHHHhhcCCcHHHHHHHHHHhHHhhC--
Q 047840 228 ---DAGAWNAMISGVAMNGDAKKSLELFDRMVKS-----G-TQPTET-TFVAVLTTCTHAKMVRDGLNLFENMSAVYG-- 295 (445)
Q Consensus 228 ---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----~-~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-- 295 (445)
-..+++.|..+|.+.|++++|...+++..+- | ..|... .++.+...|...+++++|..++....+.+-
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 2346777888899999999988888775431 2 122222 355666678899999999999987776533
Q ss_pred CCCC----hhHHHHHHHHHHhcCChHHHHHHHHHHhcC----CCC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHH-
Q 047840 296 VEPQ----LEHYACVVDLLARAGMVEEAEKFIEEKMGG----LGG---GDANVWGALLSACRIYGKIEVGNRVWRKLAE- 363 (445)
Q Consensus 296 ~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~- 363 (445)
+.++ ..+++.|...|...|++++|.+++++++.. +.. -....++.+...|.+.+++.+|.++|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 2222 467889999999999999999999987542 111 2245788899999999999999999988765
Q ss_pred ---hCCCC---chhHHHHHHHHHHcCChHHHHHHHHHHH
Q 047840 364 ---MGITD---FSTHVLSYNIYKEAGWDMEANKVRKLIS 396 (445)
Q Consensus 364 ---~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 396 (445)
.+|.+ ..+|..|+..|.+.|+++.|.++...+.
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 55554 4467789999999999999999888875
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.4e-11 Score=100.62 Aligned_cols=230 Identities=11% Similarity=0.115 Sum_probs=201.0
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHcc
Q 047840 132 SAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKC 211 (445)
Q Consensus 132 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 211 (445)
+.+.++|.+.|.+.+|.+.++..... .|-+.||..|-++|.+..++..|+.++.+-.+.- |.++....-+.+.+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHH
Confidence 67889999999999999999998875 6778899999999999999999999999988763 66777777788889999
Q ss_pred CChHHHHHHhhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHH
Q 047840 212 GHVHSALSVFEGISN---KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFE 288 (445)
Q Consensus 212 g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 288 (445)
++.++|.++|+...+ .++.+..++...|.-.++++-|+.+|+++.+.|+. +...|+.+.-+|.-.++++-++.-|.
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 999999999998765 36667777888899999999999999999999986 88889999999999999999999999
Q ss_pred HhHHhhCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 047840 289 NMSAVYGVEPQ--LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366 (445)
Q Consensus 289 ~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 366 (445)
+.... --.|+ ..+|-.+.......|++.-|.+.|+-.+..+ ..+...++.|...-.+.|++++|..++..+....|
T Consensus 383 RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 383 RALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred HHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 88864 33344 5677788888888999999999999988777 66788999999999999999999999999999888
Q ss_pred C
Q 047840 367 T 367 (445)
Q Consensus 367 ~ 367 (445)
.
T Consensus 461 ~ 461 (478)
T KOG1129|consen 461 D 461 (478)
T ss_pred c
Confidence 6
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.8e-09 Score=90.55 Aligned_cols=270 Identities=10% Similarity=0.007 Sum_probs=193.1
Q ss_pred CChhhHHHHHHHHHcCCChHHHHHHhccCCCCChhhHH---HHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047840 95 RDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWS---AIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLT 171 (445)
Q Consensus 95 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 171 (445)
.|+.....+..++...|+.++|...|++..--|+.+.. .....+.+.|+.+....+...+.... +-+...|-.-+.
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~ 308 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQ 308 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhh
Confidence 46777788888888889999999888887654333322 22334557788888888777776531 234455555555
Q ss_pred HHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCC---CChhhHHHHHHHHHhcCChHHH
Q 047840 172 ACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN---KDAGAWNAMISGVAMNGDAKKS 248 (445)
Q Consensus 172 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a 248 (445)
.....++++.|..+-++.++.+ +.+...+-.-...+...|+.+.|.-.|+.... -+...|.-|+.+|...|++.+|
T Consensus 309 ~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA 387 (564)
T KOG1174|consen 309 LLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEA 387 (564)
T ss_pred hhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHH
Confidence 6667788888888888888765 34455555555677888888888888875543 3677899999999999999988
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHH-HHh-hcCCcHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHH
Q 047840 249 LELFDRMVKSGTQPTETTFVAVL-TTC-THAKMVRDGLNLFENMSAVYGVEPQ-LEHYACVVDLLARAGMVEEAEKFIEE 325 (445)
Q Consensus 249 ~~~~~~m~~~~~~p~~~~~~~l~-~~~-~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 325 (445)
.-+-+...+. ++.+..+.+.+. ..| ....--++|..+++... .+.|+ ....+.+...+...|..+++..++++
T Consensus 388 ~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 388 NALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEK 463 (564)
T ss_pred HHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 8877766554 344566665552 222 23334577888888777 34666 44556777888888999999999988
Q ss_pred HhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhH
Q 047840 326 KMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTH 372 (445)
Q Consensus 326 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 372 (445)
.+. ..||....+.|.+.+...+.+++|++.|..+++.+|.+..+.
T Consensus 464 ~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl 508 (564)
T KOG1174|consen 464 HLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTL 508 (564)
T ss_pred HHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHH
Confidence 764 358888889999999999999999999999999998875433
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1e-10 Score=111.65 Aligned_cols=230 Identities=11% Similarity=0.017 Sum_probs=174.3
Q ss_pred CHHHHHHHHHHHH-----ccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHH---------ccCChHHHHHHhhcCCC-
Q 047840 162 NESGLVSVLTACA-----HLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYS---------KCGHVHSALSVFEGISN- 226 (445)
Q Consensus 162 ~~~~~~~l~~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~g~~~~a~~~~~~~~~- 226 (445)
+...|...+.+-. ..+++++|...+++..+.. |.+...+..+..++. ..+++++|...+++..+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 4455555555532 2245779999999999875 445556666665544 23458899999987765
Q ss_pred --CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCCh-hHH
Q 047840 227 --KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL-EHY 303 (445)
Q Consensus 227 --~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~ 303 (445)
.+..++..+...+...|++++|+..|++..+.+ +.+...+..+...+...|++++|...++++.+. .|+. ..+
T Consensus 334 dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l---~P~~~~~~ 409 (553)
T PRK12370 334 DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKL---DPTRAAAG 409 (553)
T ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCChhhH
Confidence 366788888889999999999999999998874 224567778888899999999999999999864 5543 233
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcC
Q 047840 304 ACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG 383 (445)
Q Consensus 304 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 383 (445)
..++..+...|++++|...++++.+...+.++..+..+..++...|+.++|...++++....|.+......++..|...|
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 489 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS 489 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH
Confidence 34444566789999999999998766523355667788888999999999999999988888887777888888888888
Q ss_pred ChHHHHHHHHHHHhc
Q 047840 384 WDMEANKVRKLISET 398 (445)
Q Consensus 384 ~~~~A~~~~~~m~~~ 398 (445)
+.|...++.+.+.
T Consensus 490 --~~a~~~l~~ll~~ 502 (553)
T PRK12370 490 --ERALPTIREFLES 502 (553)
T ss_pred --HHHHHHHHHHHHH
Confidence 4788877777653
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.37 E-value=9.5e-10 Score=92.36 Aligned_cols=392 Identities=11% Similarity=-0.007 Sum_probs=231.5
Q ss_pred chhhcCCchHHHHHHHHHHhcCCCCCcccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHH
Q 047840 4 GYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMG 83 (445)
Q Consensus 4 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (445)
-+....|+..|+.+++.-...+-.-...+-..+..++...|+++ +|...+..+.... .++...+..|..++.-.|.+.
T Consensus 31 dfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~-~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYE-EALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHH-HHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHH
Confidence 45567788899998887664432222222233445567889999 8888888877743 566666777777777788999
Q ss_pred HHHHHhccCCCC---------------Chhh--------------HHHHHHHHHcCCChHHHHHHhccCCC--CChhhHH
Q 047840 84 TARALFDKSPDR---------------DVVT--------------WTTMVDGYGKMGDFENARELFEKMPE--RNAVSWS 132 (445)
Q Consensus 84 ~a~~~~~~~~~~---------------~~~~--------------~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~ 132 (445)
+|..+-.+..+. |..- --+|.+.....-.+++|++++.++.. |+-...|
T Consensus 109 eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alN 188 (557)
T KOG3785|consen 109 EAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALN 188 (557)
T ss_pred HHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhH
Confidence 998887665431 1111 11233333334467888888888765 3333444
Q ss_pred H-HHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHH--------------HHHHHHHcCC---
Q 047840 133 A-IMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLW--------------VHSYAKRYHL--- 194 (445)
Q Consensus 133 ~-l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~--------------~~~~~~~~~~--- 194 (445)
. +.-+|.+..-++-+.+++.-.... .+-++...+..+....+.=+-..|++ ..+.+.+.+.
T Consensus 189 Vy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvF 267 (557)
T KOG3785|consen 189 VYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVF 267 (557)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEE
Confidence 3 344567777778777777776654 22233333333322222111111111 1122222210
Q ss_pred ---------CC-----chhhhhHHHHHHHccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCC-------hHHHHHHHH
Q 047840 195 ---------EK-----NVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGD-------AKKSLELFD 253 (445)
Q Consensus 195 ---------~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~a~~~~~ 253 (445)
-| -+..-..|+-.|.+.+++.+|..+.+++...++.-|-.-.-.++..|+ ..-|...|+
T Consensus 268 rngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffq 347 (557)
T KOG3785|consen 268 RNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQ 347 (557)
T ss_pred eCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHH
Confidence 00 112223455567788888888888888877665544443333444443 334444444
Q ss_pred HHHHcCCCCCH-HHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCC
Q 047840 254 RMVKSGTQPTE-TTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGG 332 (445)
Q Consensus 254 ~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 332 (445)
-.-..+..-|. ..-.++.+++.-..++++.+..++.+..- -...|...+ .+..+++..|++.+|+++|-.+....++
T Consensus 348 lVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ik 425 (557)
T KOG3785|consen 348 LVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIK 425 (557)
T ss_pred HhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhh
Confidence 44333333222 22334555556667788888888888743 223333333 5788899999999999999888655544
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHcCChHHHHHHHHHHHhcCCcc
Q 047840 333 GDANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT-DFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKK 402 (445)
Q Consensus 333 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 402 (445)
.+..-...|.++|.+.++.+.|..++-++ ..|. .......++.-|.+.+.+--|.+.|+.+....-.|
T Consensus 426 n~~~Y~s~LArCyi~nkkP~lAW~~~lk~--~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 426 NKILYKSMLARCYIRNKKPQLAWDMMLKT--NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred hhHHHHHHHHHHHHhcCCchHHHHHHHhc--CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 44444455667888999998886554333 2232 33344567778999999999999999887654444
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.35 E-value=3e-12 Score=78.65 Aligned_cols=50 Identities=22% Similarity=0.577 Sum_probs=43.6
Q ss_pred CChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 047840 126 RNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH 175 (445)
Q Consensus 126 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 175 (445)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67888888888888889999999999998888888888888888888864
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.8e-09 Score=93.05 Aligned_cols=279 Identities=10% Similarity=0.020 Sum_probs=215.4
Q ss_pred ChhhHHHHHHHHHcCCChHHHHHHhccCCC---CChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 047840 96 DVVTWTTMVDGYGKMGDFENARELFEKMPE---RNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTA 172 (445)
Q Consensus 96 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 172 (445)
++........-+...+++.+..++++.+.+ .....+-.-|.++...|+..+-..+=.++.+. .+-.+.+|-++.--
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCY 321 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHH
Confidence 444455556667788899999999888876 35556667778889999999888888888875 34467889999999
Q ss_pred HHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCC---CChhhHHHHHHHHHhcCChHHHH
Q 047840 173 CAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN---KDAGAWNAMISGVAMNGDAKKSL 249 (445)
Q Consensus 173 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~ 249 (445)
|...|+..+|.++|.+....+ +.=...|-.....|+-.|.-|.|+..+....+ ..-..+--+.--|.+.++...|.
T Consensus 322 Yl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe 400 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAE 400 (611)
T ss_pred HHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHH
Confidence 999999999999999887664 23356788888999999999999988865443 12222233344577889999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhh-CCCC----ChhHHHHHHHHHHhcCChHHHHHHHH
Q 047840 250 ELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVY-GVEP----QLEHYACVVDLLARAGMVEEAEKFIE 324 (445)
Q Consensus 250 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~ 324 (445)
+.|.+.... .+.|+..++-+.-.....+.+.+|..+|+.....- .+.+ -..+++.|..+|.+.+.+++|+..++
T Consensus 401 ~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q 479 (611)
T KOG1173|consen 401 KFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQ 479 (611)
T ss_pred HHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHH
Confidence 999988765 23466677777666677889999999998876310 1111 34567888999999999999999999
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 047840 325 EKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNI 378 (445)
Q Consensus 325 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 378 (445)
..+... +.|..++.++.-.|...|+++.|.+.|.+++.+.|++..+-..|..+
T Consensus 480 ~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 480 KALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLA 532 (611)
T ss_pred HHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 988877 78999999999999999999999999999999999986555555443
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.4e-08 Score=93.95 Aligned_cols=373 Identities=12% Similarity=0.023 Sum_probs=244.7
Q ss_pred HHHhcCCCCCcccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHhccCCCC----
Q 047840 20 DMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDR---- 95 (445)
Q Consensus 20 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---- 95 (445)
++....+.-|+..|..+.-+....|+++ .+.+.|++..... .-....|+.+...|...|.-..|..+++....+
T Consensus 313 k~r~~~~qnd~ai~d~Lt~al~~~g~f~-~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~p 390 (799)
T KOG4162|consen 313 KLRLKKFQNDAAIFDHLTFALSRCGQFE-VLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQP 390 (799)
T ss_pred HHHHhhhcchHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCC
Confidence 3333345567788888888888889998 7888888776643 335567888888888889988888888765442
Q ss_pred -ChhhHHHHHHHHH-cCCChHHHHHHhccCCC--------CChhhHHHHHHHHHhc-----------CCHhHHHHHHHHH
Q 047840 96 -DVVTWTTMVDGYG-KMGDFENARELFEKMPE--------RNAVSWSAIMAAYSRI-----------SDFKEVLSLFRQM 154 (445)
Q Consensus 96 -~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~ 154 (445)
+...+-..-..|. +.+..++++++-.+... -....|..+.-+|... ....++++.+++.
T Consensus 391 s~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~a 470 (799)
T KOG4162|consen 391 SDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEA 470 (799)
T ss_pred CcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHH
Confidence 2222333333333 34666666655444432 1344454444444321 1245667777777
Q ss_pred HHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCCC-------
Q 047840 155 QEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK------- 227 (445)
Q Consensus 155 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------- 227 (445)
.+.+. -|+....-+.--|+-.++++.|.+..++..+.+-..+...|.-|.-++...+++.+|+.+.+.....
T Consensus 471 v~~d~-~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l 549 (799)
T KOG4162|consen 471 VQFDP-TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVL 549 (799)
T ss_pred HhcCC-CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhh
Confidence 66431 1333333333445667788888888888888765667777777777777888888887776544321
Q ss_pred ------------C----hhhHHHHHHHHH-----------------------hcCChHHHHHHHHHHH--------HcC-
Q 047840 228 ------------D----AGAWNAMISGVA-----------------------MNGDAKKSLELFDRMV--------KSG- 259 (445)
Q Consensus 228 ------------~----~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~m~--------~~~- 259 (445)
| ..+...++...- ..++..++.+..+++. ..|
T Consensus 550 ~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~s 629 (799)
T KOG4162|consen 550 MDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGS 629 (799)
T ss_pred chhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccc
Confidence 0 111222221111 0011222222222111 111
Q ss_pred --------C--CCCH------HHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 047840 260 --------T--QPTE------TTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFI 323 (445)
Q Consensus 260 --------~--~p~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 323 (445)
+ .|+. ..|......+.+.+..++|...+.+... -.+.....|......+...|.+++|.+.|
T Consensus 630 e~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af 707 (799)
T KOG4162|consen 630 ELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAF 707 (799)
T ss_pred ccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHH
Confidence 0 1221 1233445567788888999988888875 33445667777777888899999999999
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHH--HHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 324 EEKMGGLGGGDANVWGALLSACRIYGKIEVGNR--VWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 324 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
......+ |.++.+..++...+...|+..-|.. ++..+.+.+|.++.+|..++..+.+.|+.++|.+.|......
T Consensus 708 ~~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 708 LVALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 9988766 5667889999999999998888877 999999999999999999999999999999999999988754
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.31 E-value=9e-12 Score=76.50 Aligned_cols=50 Identities=28% Similarity=0.500 Sum_probs=36.7
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc
Q 047840 227 KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTH 276 (445)
Q Consensus 227 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 276 (445)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 46667777777777777777777777777777777777777777777654
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.3e-08 Score=94.21 Aligned_cols=285 Identities=13% Similarity=0.064 Sum_probs=176.2
Q ss_pred HHHHcCCChHHHHHHhccCCC--CC-hhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-c-----
Q 047840 105 DGYGKMGDFENARELFEKMPE--RN-AVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACA-H----- 175 (445)
Q Consensus 105 ~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~-~----- 175 (445)
..+...|++++|++.++.-.. .| ..........+.+.|+.++|..+|..+++.+ |+...|...+..+. -
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcccc
Confidence 445667777777777766543 23 3334556677777788888888888877754 44444443333332 1
Q ss_pred cCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChH-HHHHHhhcCCCCC-hhhHHHHHHHHHhcCChHHHHHHHH
Q 047840 176 LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVH-SALSVFEGISNKD-AGAWNAMISGVAMNGDAKKSLELFD 253 (445)
Q Consensus 176 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~a~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~ 253 (445)
..+.+....+|+++...- |.......+.-.+.....+. .+..++..+.... +.+|+.+-..|.......-..+++.
T Consensus 90 ~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~ 167 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVE 167 (517)
T ss_pred cccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHH
Confidence 124555666777665542 22222222222222222222 2233333333333 3455555555554444444555555
Q ss_pred HHHHc----C----------CCCCH--HHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHHhcCCh
Q 047840 254 RMVKS----G----------TQPTE--TTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ-LEHYACVVDLLARAGMV 316 (445)
Q Consensus 254 ~m~~~----~----------~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~ 316 (445)
..... + -.|+. .++..+...|...|++++|..+++..+.. .|+ +..|..-...+-+.|++
T Consensus 168 ~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h---tPt~~ely~~KarilKh~G~~ 244 (517)
T PF12569_consen 168 EYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH---TPTLVELYMTKARILKHAGDL 244 (517)
T ss_pred HHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHCCCH
Confidence 54322 1 12333 24455667788899999999999988864 455 67777888889999999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CC-Cch----hH--HHHHHHHHHcCChHH
Q 047840 317 EEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMG--IT-DFS----TH--VLSYNIYKEAGWDME 387 (445)
Q Consensus 317 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~-~~~----~~--~~l~~~~~~~g~~~~ 387 (445)
.+|.+.++...... .-|...=+-.+..+.+.|++++|.+.+....+.+ |. +.. .| ...+.+|.+.|++..
T Consensus 245 ~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ 323 (517)
T PF12569_consen 245 KEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGL 323 (517)
T ss_pred HHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 99999999988777 5677777777888889999999999888887654 22 111 22 356778999999999
Q ss_pred HHHHHHHHHh
Q 047840 388 ANKVRKLISE 397 (445)
Q Consensus 388 A~~~~~~m~~ 397 (445)
|++-|..+.+
T Consensus 324 ALk~~~~v~k 333 (517)
T PF12569_consen 324 ALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHH
Confidence 9887766654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.4e-08 Score=88.99 Aligned_cols=382 Identities=12% Similarity=0.111 Sum_probs=220.5
Q ss_pred hhcCCchHHHHHHHHHHhcCCCCCcccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHH
Q 047840 6 MQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTA 85 (445)
Q Consensus 6 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 85 (445)
-..+++...+.+.+.+.. +.+-...|.....-.+...|+.+ .|........+.. .-+.+.|+.+.-.+....++++|
T Consensus 18 yE~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~-ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~ea 94 (700)
T KOG1156|consen 18 YETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKE-EAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEA 94 (700)
T ss_pred HHHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchH-HHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHH
Confidence 345677777777777776 33334445444444455667666 6666655544422 23455677777777777788888
Q ss_pred HHHhccCCC---CChhhHHHHHHHHHcCCChHHHHHHhccCCC---CChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcC-
Q 047840 86 RALFDKSPD---RDVVTWTTMVDGYGKMGDFENARELFEKMPE---RNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVG- 158 (445)
Q Consensus 86 ~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~- 158 (445)
+..|..... .|...|.-+.-.-++.|+++.....-....+ .....|..++.++.-.|++..|..+++...+..
T Consensus 95 iKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~ 174 (700)
T KOG1156|consen 95 IKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN 174 (700)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 888876543 3455555554444555565555555444433 234456666666666777777777776665432
Q ss_pred CCCCHHHHHHHHH------HHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCCC--Chh
Q 047840 159 MKPNESGLVSVLT------ACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK--DAG 230 (445)
Q Consensus 159 ~~p~~~~~~~l~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~ 230 (445)
-.|+...+..... .....|.++.|.+.+..-...- ......-..-...+.+.+++++|..++..+..+ |..
T Consensus 175 ~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i-~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~ 253 (700)
T KOG1156|consen 175 TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI-VDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNL 253 (700)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH-HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhH
Confidence 2344444433222 2334555555555544433221 111112222334455566666666666655442 222
Q ss_pred hHHHHH-HHHHhcC-----------------------------------ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 047840 231 AWNAMI-SGVAMNG-----------------------------------DAKKSLELFDRMVKSGTQPTETTFVAVLTTC 274 (445)
Q Consensus 231 ~~~~l~-~~~~~~~-----------------------------------~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 274 (445)
.|.... .++.+-. -.+..-+++..+.+.|+++--..+ ...|
T Consensus 254 ~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl---~SLy 330 (700)
T KOG1156|consen 254 DYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDL---RSLY 330 (700)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhh---HHHH
Confidence 222221 1121111 122233344445555554332222 2222
Q ss_pred hcCCcHHHHHHHHHHhHHhh-----CC------------CCChhHHH--HHHHHHHhcCChHHHHHHHHHHhcCCCCCC-
Q 047840 275 THAKMVRDGLNLFENMSAVY-----GV------------EPQLEHYA--CVVDLLARAGMVEEAEKFIEEKMGGLGGGD- 334 (445)
Q Consensus 275 ~~~~~~~~a~~~~~~~~~~~-----~~------------~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~- 334 (445)
-.....+ +++++...+ |- +|+...|+ .++..+-+.|+++.|..+++..+++. |+
T Consensus 331 k~p~k~~----~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHT--PTl 404 (700)
T KOG1156|consen 331 KDPEKVA----FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHT--PTL 404 (700)
T ss_pred hchhHhH----HHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC--chH
Confidence 2211111 222222110 11 45655554 45677889999999999999998664 44
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 047840 335 ANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGM 400 (445)
Q Consensus 335 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 400 (445)
+..|..-.+.+...|++++|..+++++.+++-.|..+-.--+.-..++++.++|.++.....+.|.
T Consensus 405 iEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 405 IELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 456777788899999999999999999999988876666788888999999999999999988876
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.2e-07 Score=86.20 Aligned_cols=254 Identities=12% Similarity=0.127 Sum_probs=145.7
Q ss_pred cCCHhHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCc---hhhhhHHHHHHHcc
Q 047840 141 ISDFKEVLSLFRQMQEVGMKPN------ESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKN---VILATAVVDMYSKC 211 (445)
Q Consensus 141 ~~~~~~a~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 211 (445)
.|+..+-...|.+.... +.|- ...|..+.+.|-..|+++.|..+|++..+...+.- ..+|.....+-.+.
T Consensus 360 e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh 438 (835)
T KOG2047|consen 360 EGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRH 438 (835)
T ss_pred cCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhh
Confidence 45566667777776653 3331 24567788888899999999999999987664432 45677777777888
Q ss_pred CChHHHHHHhhcCCC-C--------------------ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-C-------
Q 047840 212 GHVHSALSVFEGISN-K--------------------DAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQ-P------- 262 (445)
Q Consensus 212 g~~~~a~~~~~~~~~-~--------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p------- 262 (445)
.+++.|.++.+.... | +...|+..+...-..|-++....+|+++.+..+. |
T Consensus 439 ~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyA 518 (835)
T KOG2047|consen 439 ENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYA 518 (835)
T ss_pred hhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 889999988876532 1 2335666666666667777777777777654332 1
Q ss_pred --------------------------CHH-HHHHHHHHhh---cCCcHHHHHHHHHHhHHhhCCCCChhHHHHH--HHHH
Q 047840 263 --------------------------TET-TFVAVLTTCT---HAKMVRDGLNLFENMSAVYGVEPQLEHYACV--VDLL 310 (445)
Q Consensus 263 --------------------------~~~-~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l--~~~~ 310 (445)
+.. .|+..+.-+. ....++.|..+|++..+ +++|...-+--| ...=
T Consensus 519 mfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~--~Cpp~~aKtiyLlYA~lE 596 (835)
T KOG2047|consen 519 MFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD--GCPPEHAKTIYLLYAKLE 596 (835)
T ss_pred HHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHH
Confidence 111 1111111111 11245566666666654 444432111111 1111
Q ss_pred HhcCChHHHHHHHHHHhcCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHcCChH
Q 047840 311 ARAGMVEEAEKFIEEKMGGLGGGD--ANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDF--STHVLSYNIYKEAGWDM 386 (445)
Q Consensus 311 ~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~ 386 (445)
-+.|-...|+.++++.... +++. ...||..|.--...=.+.....+|+++++.-|++. ....-.++.-.+.|..+
T Consensus 597 Ee~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEid 675 (835)
T KOG2047|consen 597 EEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEID 675 (835)
T ss_pred HHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHH
Confidence 1345555566666654332 1222 23455555444444344555667777777655521 22334566777889999
Q ss_pred HHHHHHHHHHhc
Q 047840 387 EANKVRKLISET 398 (445)
Q Consensus 387 ~A~~~~~~m~~~ 398 (445)
.|..++..-.+.
T Consensus 676 RARaIya~~sq~ 687 (835)
T KOG2047|consen 676 RARAIYAHGSQI 687 (835)
T ss_pred HHHHHHHhhhhc
Confidence 999998776544
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.8e-09 Score=95.71 Aligned_cols=262 Identities=11% Similarity=0.088 Sum_probs=188.6
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHcc---
Q 047840 135 MAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKC--- 211 (445)
Q Consensus 135 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 211 (445)
...+...|++++|++.++.-... +.............+.+.|+.++|..+|..+++.+ |.|..-|..+..+..-.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhccc
Confidence 35568899999999999875543 44345566778888999999999999999999997 45555566666665222
Q ss_pred --CChHHHHHHhhcCCCC--ChhhHHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHH
Q 047840 212 --GHVHSALSVFEGISNK--DAGAWNAMISGVAMNGDA-KKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNL 286 (445)
Q Consensus 212 --g~~~~a~~~~~~~~~~--~~~~~~~l~~~~~~~~~~-~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 286 (445)
.+.+...++|+++... ...+...+.-.+.....+ ..+..++..+..+|+++ +|+.+-..|....+..-..++
T Consensus 89 ~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred ccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHH
Confidence 2567777788776542 222222222222222223 34556667778888764 444455556655555555666
Q ss_pred HHHhHHhh-------------CCCCChhHH--HHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCh
Q 047840 287 FENMSAVY-------------GVEPQLEHY--ACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKI 351 (445)
Q Consensus 287 ~~~~~~~~-------------~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 351 (445)
+....... .-+|+...| ..+...|-..|++++|++++++.++.. |-.+..|..-.+.+-..|++
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~ 244 (517)
T PF12569_consen 166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDL 244 (517)
T ss_pred HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCH
Confidence 66554321 112444334 455777889999999999999999876 44578899999999999999
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhcCCcc
Q 047840 352 EVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKK 402 (445)
Q Consensus 352 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 402 (445)
.+|.+.++.+..+++.|-.+..-.+..+.++|+.++|.+++....+.+..|
T Consensus 245 ~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~ 295 (517)
T PF12569_consen 245 KEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDP 295 (517)
T ss_pred HHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCc
Confidence 999999999999999998888889999999999999999999998877644
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.4e-07 Score=83.42 Aligned_cols=384 Identities=9% Similarity=0.029 Sum_probs=235.2
Q ss_pred hhchhhcCCchHHHHHHHHHHhcCCCCCcccHHHHHHHhhhcCCchhHHHHHHHHHHHhcC-CCChhhHHHHHHHHHhcC
Q 047840 2 IRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGF-GEDPFVVSSLLEFYSLVH 80 (445)
Q Consensus 2 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 80 (445)
|+-+.++|++++|+....++...+ +-+...+..=+-++.+.+.++ .|..+.+ ..+. ..+...+---+.+.-+.+
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~-~ALk~ik---k~~~~~~~~~~~fEKAYc~Yrln 93 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYE-DALKLIK---KNGALLVINSFFFEKAYCEYRLN 93 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHH-HHHHHHH---hcchhhhcchhhHHHHHHHHHcc
Confidence 345678899999999999999855 335556777777788888888 7774432 2221 111111111233344789
Q ss_pred CHHHHHHHhccCCCCChhhHHHHHHHHHcCCChHHHHHHhccCCCC-------------------------------Chh
Q 047840 81 KMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPER-------------------------------NAV 129 (445)
Q Consensus 81 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------------------------------~~~ 129 (445)
..++|...++.....+..+...-...+.+.|++++|.++|+.+.+. ...
T Consensus 94 k~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~ 173 (652)
T KOG2376|consen 94 KLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPED 173 (652)
T ss_pred cHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcc
Confidence 9999999999555556667777788899999999999999888310 111
Q ss_pred hHHH---HHHHHHhcCCHhHHHHHHHHHHHc-------CCCCCH-------HHHHHHHHHHHccCChhHHHHHHHHHHHc
Q 047840 130 SWSA---IMAAYSRISDFKEVLSLFRQMQEV-------GMKPNE-------SGLVSVLTACAHLGAITQGLWVHSYAKRY 192 (445)
Q Consensus 130 ~~~~---l~~~~~~~~~~~~a~~~~~~~~~~-------~~~p~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 192 (445)
+|.. ....+...|++.+|+++++..... +-.-+. ..-..+.-++...|+.++|..+|...++.
T Consensus 174 syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~ 253 (652)
T KOG2376|consen 174 SYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKR 253 (652)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh
Confidence 3333 344567889999999999887321 111011 11223455677899999999999999887
Q ss_pred CCCCchhh----hhHHHHHHHccC---------------------------------------------ChHHHHHHhhc
Q 047840 193 HLEKNVIL----ATAVVDMYSKCG---------------------------------------------HVHSALSVFEG 223 (445)
Q Consensus 193 ~~~~~~~~----~~~l~~~~~~~g---------------------------------------------~~~~a~~~~~~ 223 (445)
. ++|... .|.|+..-.... .-+.+.++-..
T Consensus 254 ~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~ 332 (652)
T KOG2376|consen 254 N-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSAS 332 (652)
T ss_pred c-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Confidence 6 344322 222222111110 00111111111
Q ss_pred CCCCC-hhhHHHHHHHH--HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHH--------HhHH
Q 047840 224 ISNKD-AGAWNAMISGV--AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFE--------NMSA 292 (445)
Q Consensus 224 ~~~~~-~~~~~~l~~~~--~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~--------~~~~ 292 (445)
.+... ...+.+++... ++.....++.+++....+....-........+......|+++.|..++. .+.+
T Consensus 333 lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~ 412 (652)
T KOG2376|consen 333 LPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILE 412 (652)
T ss_pred CCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhh
Confidence 11111 12233333322 2222466677777766554222223444555666788999999999998 4443
Q ss_pred hhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcC--CCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 047840 293 VYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGG--LGGGDA----NVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366 (445)
Q Consensus 293 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 366 (445)
. +.. +.+...+...+.+.++.+.|..++.+.+.. .-.+.. .++.-+...-.+.|+.++|..+++++.+..|
T Consensus 413 ~-~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~ 489 (652)
T KOG2376|consen 413 A-KHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNP 489 (652)
T ss_pred h-ccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCC
Confidence 2 333 445566777788888777777777665321 001222 2333344444677999999999999999999
Q ss_pred CCchhHHHHHHHHHHcCChHHHHHHHHHH
Q 047840 367 TDFSTHVLSYNIYKEAGWDMEANKVRKLI 395 (445)
Q Consensus 367 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 395 (445)
++..+...++.+|++. +.+.|..+-+.+
T Consensus 490 ~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 490 NDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred chHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 9999999999888876 456676665543
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.1e-09 Score=91.66 Aligned_cols=218 Identities=8% Similarity=0.006 Sum_probs=145.0
Q ss_pred CCHhHHHHHHHHHHHcC-CCCC--HHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHH
Q 047840 142 SDFKEVLSLFRQMQEVG-MKPN--ESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSAL 218 (445)
Q Consensus 142 ~~~~~a~~~~~~~~~~~-~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 218 (445)
++.+.++.-+.+++... ..|+ ...|..+...+...|+.++|...|++..+.. +.+...|+.+...+...|+++.|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 45666777776666432 2222 3456667777778888888888888887765 456777888888888888888888
Q ss_pred HHhhcCCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhC
Q 047840 219 SVFEGISN--K-DAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG 295 (445)
Q Consensus 219 ~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 295 (445)
..|++..+ | +..+|..+...+...|++++|++.|++..+. .|+..........+...++.++|...+..... .
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~ 194 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE--K 194 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--h
Confidence 88877644 2 4567777888888899999999999988875 34332222222223456789999999977654 2
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHHHhc---CCC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 047840 296 VEPQLEHYACVVDLLARAGMVEEAEKFIEEKMG---GLG---GGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITD 368 (445)
Q Consensus 296 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 368 (445)
..|+...+ .+ .....|+..++ +.+..+.+ ..+ +.....|..+...+...|++++|+..|+++++..|++
T Consensus 195 ~~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~ 269 (296)
T PRK11189 195 LDKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYN 269 (296)
T ss_pred CCccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCch
Confidence 23332222 22 23345665444 24444332 111 1234578899999999999999999999999998754
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1e-09 Score=102.58 Aligned_cols=269 Identities=15% Similarity=0.122 Sum_probs=188.7
Q ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHhccCCCC----ChhhHHHHHHHHHcCCChHHHHHHhccCCCCC
Q 047840 52 FVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDR----DVVTWTTMVDGYGKMGDFENARELFEKMPERN 127 (445)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 127 (445)
.++..+...|+.|+..||.+++.-|+..|+++.|- +|.-|.-. +...++.++.+..+.++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 45667788899999999999999999999999998 88766543 5667889999888888876664 788
Q ss_pred hhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHH-cCCCCchhhhhHHHH
Q 047840 128 AVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKR-YHLEKNVILATAVVD 206 (445)
Q Consensus 128 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~ 206 (445)
+.+|..|..+|...||... ++..++ -...+...+...|.-.....++..+.- .+.-||. ...+.
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda---~n~il 147 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDA---ENAIL 147 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhH---HHHHH
Confidence 9999999999999999776 222222 111222333334433333333333211 1122332 23445
Q ss_pred HHHccCChHHHHHHhhcCCCCCh-hhHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHH
Q 047840 207 MYSKCGHVHSALSVFEGISNKDA-GAWNAMISGVAMNG-DAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGL 284 (445)
Q Consensus 207 ~~~~~g~~~~a~~~~~~~~~~~~-~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 284 (445)
...-.|.++.+.+++..++...- ..+-.+++-..... .+++-..+.+.... .|++.+|..++.+-...|+.+.|.
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak 224 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAK 224 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHH
Confidence 55667888888888887765311 01111344333322 23333333333332 589999999999999999999999
Q ss_pred HHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCC
Q 047840 285 NLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGK 350 (445)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 350 (445)
.++.+|.+. |++.+.+.|-.|+-+ .++..-+..+++.|.+.|+.|+..|+...+..+.++|.
T Consensus 225 ~ll~emke~-gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 225 NLLYEMKEK-GFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHHHHHHHc-CCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 999999988 999998888777744 78888899999999999999999998887777766443
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.25 E-value=7e-09 Score=90.92 Aligned_cols=293 Identities=14% Similarity=0.086 Sum_probs=207.5
Q ss_pred HHHHHHHHHcCCChHHHHHHhccCCC--CC-hhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHc
Q 047840 100 WTTMVDGYGKMGDFENARELFEKMPE--RN-AVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPN-ESGLVSVLTACAH 175 (445)
Q Consensus 100 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 175 (445)
+-...+-|.+.|.+++|++++....+ |+ +.-|.....+|...|+|+++.+--.+.++ +.|+ ...+.--.+++-.
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALE--l~P~Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALE--LNPDYVKALLRRASAHEQ 195 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhh--cCcHHHHHHHHHHHHHHh
Confidence 33455678899999999999999875 67 77889999999999999999998888877 4565 3456666778888
Q ss_pred cCChhHHHHHHHHHHH-------------------------------cC--CCCchhhhhHHHHHHHc---------cC-
Q 047840 176 LGAITQGLWVHSYAKR-------------------------------YH--LEKNVILATAVVDMYSK---------CG- 212 (445)
Q Consensus 176 ~~~~~~a~~~~~~~~~-------------------------------~~--~~~~~~~~~~l~~~~~~---------~g- 212 (445)
.|++++|+.-.....- .+ +-|+.....+....+-. ..
T Consensus 196 lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~k 275 (606)
T KOG0547|consen 196 LGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDK 275 (606)
T ss_pred hccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCcc
Confidence 9999988743222100 01 11222222211111100 00
Q ss_pred ---ChHHHHHHhhcCCC--------------------C-----Chh------hHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 047840 213 ---HVHSALSVFEGISN--------------------K-----DAG------AWNAMISGVAMNGDAKKSLELFDRMVKS 258 (445)
Q Consensus 213 ---~~~~a~~~~~~~~~--------------------~-----~~~------~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 258 (445)
...++.+.+..-.+ . |.. +...-..-+.-.|+.-.|..-|+..+..
T Consensus 276 sDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l 355 (606)
T KOG0547|consen 276 SDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKL 355 (606)
T ss_pred chhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhc
Confidence 01122222211110 0 111 1111112234568888999999998886
Q ss_pred CCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHH
Q 047840 259 GTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVW 338 (445)
Q Consensus 259 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 338 (445)
...++. .|.-+...|....+.++.++.|....+.. +-++.+|-.-...+.-.+++++|..=|++.++.. +.++..|
T Consensus 356 ~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld--p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~ 431 (606)
T KOG0547|consen 356 DPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD--PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAY 431 (606)
T ss_pred Ccccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC--CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHH
Confidence 544333 27777778999999999999999998531 3356677777777777899999999999998777 6678889
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 339 GALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 339 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
-.+..+..+.+++++++..|++.++..|.-+..|+..+.++..+++++.|.+.|+...+.
T Consensus 432 iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 432 IQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 889888889999999999999999999999999999999999999999999999988754
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.24 E-value=1e-09 Score=94.66 Aligned_cols=248 Identities=13% Similarity=0.111 Sum_probs=158.7
Q ss_pred cCCChHHHHHHhccCCC--C--ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHH
Q 047840 109 KMGDFENARELFEKMPE--R--NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLW 184 (445)
Q Consensus 109 ~~g~~~~A~~~~~~~~~--~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 184 (445)
-.|++..++.-.+ ... + +......+.+++...|+++.++. +.... -.|.......+...+...++-+.+..
T Consensus 13 y~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~-~~~~l~av~~la~y~~~~~~~e~~l~ 87 (290)
T PF04733_consen 13 YLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKS-SSPELQAVRLLAEYLSSPSDKESALE 87 (290)
T ss_dssp CTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TT-SSCCCHHHHHHHHHHCTSTTHHCHHH
T ss_pred HhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccC-CChhHHHHHHHHHHHhCccchHHHHH
Confidence 3455655554333 111 1 22234455667777777665443 23222 25555555555554444334444444
Q ss_pred HHHHHHHcCCC-CchhhhhHHHHHHHccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 047840 185 VHSYAKRYHLE-KNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPT 263 (445)
Q Consensus 185 ~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 263 (445)
-+++....... .+..+.......+...|++++|++++.+. .+.......+..|.+.++++.|.+.++.|.+. ..|
T Consensus 88 ~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD 163 (290)
T PF04733_consen 88 ELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED 163 (290)
T ss_dssp HHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc
Confidence 33333322222 23333344445677789999999888776 56677777889999999999999999999875 333
Q ss_pred HHHHHHHHHHhh----cCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHH
Q 047840 264 ETTFVAVLTTCT----HAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWG 339 (445)
Q Consensus 264 ~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 339 (445)
.+...+..++. ....+.+|..+|+++.. ...+++.+.+.+..+....|++++|.+++.+....+ +.++.+..
T Consensus 164 -~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~La 239 (290)
T PF04733_consen 164 -SILTQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLA 239 (290)
T ss_dssp -HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHH
T ss_pred -HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHH
Confidence 44444555433 23468999999999876 556788888889999999999999999999988776 66778888
Q ss_pred HHHHHHHHcCCh-HHHHHHHHHHHHhCCCCc
Q 047840 340 ALLSACRIYGKI-EVGNRVWRKLAEMGITDF 369 (445)
Q Consensus 340 ~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~ 369 (445)
.++.+....|+. +.+.+.+.++....|.++
T Consensus 240 Nliv~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 240 NLIVCSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 888888888887 778889999998888866
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.1e-09 Score=92.27 Aligned_cols=215 Identities=15% Similarity=0.030 Sum_probs=155.7
Q ss_pred CChhHHHHHHHHHHHcC-CCC--chhhhhHHHHHHHccCChHHHHHHhhcCCC---CChhhHHHHHHHHHhcCChHHHHH
Q 047840 177 GAITQGLWVHSYAKRYH-LEK--NVILATAVVDMYSKCGHVHSALSVFEGISN---KDAGAWNAMISGVAMNGDAKKSLE 250 (445)
Q Consensus 177 ~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~ 250 (445)
+..+.++.-+.+++... ..| ....|..+...|...|+++.|...|++..+ .+...|+.+...+...|++++|..
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 45566677777777532 122 245677788889999999999999987754 367799999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCC
Q 047840 251 LFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGL 330 (445)
Q Consensus 251 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 330 (445)
.|++..+.... +..++..+..++...|++++|.+.++...+. .|+..........+...+++++|...+.+.....
T Consensus 120 ~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 120 AFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 99999885322 4667788888888999999999999999865 4543322222223446788999999997765332
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH-------HhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 047840 331 GGGDANVWGALLSACRIYGKIEVGNRVWRKLA-------EMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGM 400 (445)
Q Consensus 331 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 400 (445)
.|+...+ .......|+...+ +.++.+. +..|..+.+|..++..+.+.|++++|...|++..+.+.
T Consensus 196 -~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 196 -DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred -CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 3333222 2233345666544 3444444 44555667899999999999999999999999886654
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.2e-07 Score=80.12 Aligned_cols=252 Identities=12% Similarity=-0.013 Sum_probs=147.2
Q ss_pred hcCCHhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCC-----
Q 047840 140 RISDFKEVLSLFRQMQEVG-MKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGH----- 213 (445)
Q Consensus 140 ~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----- 213 (445)
..++...|..++-.+.... ++-|......+.+.+...|+.++|...|++....+ +-+........-.+.+.|+
T Consensus 208 ~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~~~ 286 (564)
T KOG1174|consen 208 FNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQDS 286 (564)
T ss_pred HhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhhHH
Confidence 3444445555544443322 44456666777777777777777777777766543 1111111111112233333
Q ss_pred -----------------------------hHHHHHHhhcCCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 047840 214 -----------------------------VHSALSVFEGISNK---DAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQ 261 (445)
Q Consensus 214 -----------------------------~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 261 (445)
++.|..+-++..+. +...+-.-...+...+++++|.-.|+..+.. -+
T Consensus 287 ~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L-ap 365 (564)
T KOG1174|consen 287 ALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQML-AP 365 (564)
T ss_pred HHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhc-ch
Confidence 33343333333222 2333333334566667777777777766553 12
Q ss_pred CCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHH-HHHHh-cCChHHHHHHHHHHhcCCCCCCHHHHH
Q 047840 262 PTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVV-DLLAR-AGMVEEAEKFIEEKMGGLGGGDANVWG 339 (445)
Q Consensus 262 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~ 339 (445)
-+...|..|+.+|...|+..+|...-+...+ -++.+..+.+.+. ..+.. ...-++|.++++..+... |.-....+
T Consensus 366 ~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~-P~Y~~AV~ 442 (564)
T KOG1174|consen 366 YRLEIYRGLFHSYLAQKRFKEANALANWTIR--LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN-PIYTPAVN 442 (564)
T ss_pred hhHHHHHHHHHHHHhhchHHHHHHHHHHHHH--HhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC-CccHHHHH
Confidence 3556777777777777777777766666554 3344455544442 22222 222366777777665443 22345667
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 047840 340 ALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISE 397 (445)
Q Consensus 340 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 397 (445)
.+...|...|..+.++.++++.+...|+ ......|++.+...+.+.+|.+.|.....
T Consensus 443 ~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 443 LIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 7777888888888889888888887776 44788888888888888888888776543
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.3e-08 Score=87.94 Aligned_cols=366 Identities=9% Similarity=0.033 Sum_probs=194.3
Q ss_pred chhhcCCchHHHHHHHHHHhcCCCCCcccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCCh-hhHHHHHHHHHhcCCH
Q 047840 4 GYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDP-FVVSSLLEFYSLVHKM 82 (445)
Q Consensus 4 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~ 82 (445)
+.+..|+++.|+.+|-+.+... ++|..-|+.=..+++..|+++ .|.+=-...++ +.|+. ..|.....++.-.|++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~-~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYE-KALKDATKTRR--LNPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred hhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHH-HHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccH
Confidence 4567899999999999988754 347777888889999999999 66654444444 55663 5688889999999999
Q ss_pred HHHHHHhccCCCC---ChhhHHHHHHHHHcCCChHHHHHHhcc------CC-CC------ChhhHHHHHHHHHhc-----
Q 047840 83 GTARALFDKSPDR---DVVTWTTMVDGYGKMGDFENARELFEK------MP-ER------NAVSWSAIMAAYSRI----- 141 (445)
Q Consensus 83 ~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~------~~-~~------~~~~~~~l~~~~~~~----- 141 (445)
++|..-|.+.++. +...++.+..++... . .+.+.|.. +. .| ....|..++..+-+.
T Consensus 87 ~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~--~-~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~ 163 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPSNKQLKTGLAQAYLED--Y-AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLK 163 (539)
T ss_pred HHHHHHHHHHhhcCCchHHHHHhHHHhhhHH--H-HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence 9999999988763 444555565555111 0 00111110 00 00 111122222111110
Q ss_pred -----CCHhHHHHHHHH-----HHHc-------CCCC----------------------CHHHHHHHHHHHHccCChhHH
Q 047840 142 -----SDFKEVLSLFRQ-----MQEV-------GMKP----------------------NESGLVSVLTACAHLGAITQG 182 (445)
Q Consensus 142 -----~~~~~a~~~~~~-----~~~~-------~~~p----------------------~~~~~~~l~~~~~~~~~~~~a 182 (445)
.+...+.-.+.. +... +..| -..-...+.++..+..++..+
T Consensus 164 ~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a 243 (539)
T KOG0548|consen 164 LYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETA 243 (539)
T ss_pred cccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHH
Confidence 001111110000 0000 0000 113445566666666666666
Q ss_pred HHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCCCChh----------hHHHHHHHHHhcCChHHHHHHH
Q 047840 183 LWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAG----------AWNAMISGVAMNGDAKKSLELF 252 (445)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----------~~~~l~~~~~~~~~~~~a~~~~ 252 (445)
.+-+....... .+..-++....+|...|.+..+...-....+.... .+..+..+|.+.++++.++..|
T Consensus 244 ~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~ 321 (539)
T KOG0548|consen 244 IQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYY 321 (539)
T ss_pred HHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence 66666666554 34444555555666666665555554443322111 1111223445556666666666
Q ss_pred HHHHHcCCCCCHHH-------------------------HHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHH
Q 047840 253 DRMVKSGTQPTETT-------------------------FVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVV 307 (445)
Q Consensus 253 ~~m~~~~~~p~~~~-------------------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 307 (445)
.+.......|+..+ ...-...+.+.|++..|...|.++++. .+.|...|..-.
T Consensus 322 ~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr--~P~Da~lYsNRA 399 (539)
T KOG0548|consen 322 QKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR--DPEDARLYSNRA 399 (539)
T ss_pred HHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--CCchhHHHHHHH
Confidence 66544333332211 011123344556666666666666543 233455566666
Q ss_pred HHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 047840 308 DLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKE 381 (445)
Q Consensus 308 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 381 (445)
-+|.+.|.+..|+.=.+..++.+ ++....|..-..++....++++|.+.|++.++.+|.+......+.+++..
T Consensus 400 ac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 400 ACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 66666666666666555555544 44455555555555555666666666666666666555544444444443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.4e-09 Score=97.23 Aligned_cols=220 Identities=11% Similarity=0.030 Sum_probs=176.7
Q ss_pred HHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCC---CChhhHHHHHHHHHhcCChHHHH
Q 047840 173 CAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN---KDAGAWNAMISGVAMNGDAKKSL 249 (445)
Q Consensus 173 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~ 249 (445)
+.+.|++.+|.-.|+..++.+ |-+...|..|.......++-..|+..+++..+ .+..+...|.-.|...|.-..|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 467888999999999988876 66788899898888888888888888877655 35667778888899999999999
Q ss_pred HHHHHHHHcCCC--------CCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHH
Q 047840 250 ELFDRMVKSGTQ--------PTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEK 321 (445)
Q Consensus 250 ~~~~~m~~~~~~--------p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 321 (445)
+.++.-....++ ++...-.. ..+.....+....++|-++....+..+|+.+...|.-.|.-.|++++|..
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 999887654311 00000000 12333344566677777777665656788888889888999999999999
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHH
Q 047840 322 FIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLIS 396 (445)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 396 (445)
.|+.++... |.|...||.|...++...+.++|+..|.+++++.|.-.++...|+..|...|.+++|.+.|-...
T Consensus 452 cf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 452 CFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 999999877 67889999999999999999999999999999999999999999999999999999999666554
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.6e-08 Score=88.31 Aligned_cols=388 Identities=15% Similarity=0.146 Sum_probs=252.8
Q ss_pred HHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHhccCCCC---ChhhHHHHHHHHHc
Q 047840 33 FPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDR---DVVTWTTMVDGYGK 109 (445)
Q Consensus 33 ~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~ 109 (445)
|..+++ |...+++. ......+.+.+ +.+.-..+.....-.+...|+-++|.......... +.+.|+.+.-.+-.
T Consensus 11 F~~~lk-~yE~kQYk-kgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 11 FRRALK-CYETKQYK-KGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHH-HHHHHHHH-hHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhh
Confidence 344444 34556777 67777777666 34444455544444566789999999988876653 56789999988889
Q ss_pred CCChHHHHHHhccCCC---CChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHH
Q 047840 110 MGDFENARELFEKMPE---RNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVH 186 (445)
Q Consensus 110 ~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 186 (445)
..++++|++.|+.... .|...|.-+.-.-++.|+++.......++.+.. +.....|..+..+..-.|+...|..+.
T Consensus 88 dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il 166 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEIL 166 (700)
T ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998764 366677777777788899999998888887742 224556778888888899999999999
Q ss_pred HHHHHcCC-CCchhhhhHHH------HHHHccCChHHHHHHhhcCCCC--Chhh-HHHHHHHHHhcCChHHHHHHHHHHH
Q 047840 187 SYAKRYHL-EKNVILATAVV------DMYSKCGHVHSALSVFEGISNK--DAGA-WNAMISGVAMNGDAKKSLELFDRMV 256 (445)
Q Consensus 187 ~~~~~~~~-~~~~~~~~~l~------~~~~~~g~~~~a~~~~~~~~~~--~~~~-~~~l~~~~~~~~~~~~a~~~~~~m~ 256 (445)
++..+... .|+...+.... ....+.|.++.|.+.+....+. |-.. -.+-...+.+.+++++|..++..+.
T Consensus 167 ~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll 246 (700)
T KOG1156|consen 167 EEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLL 246 (700)
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHH
Confidence 99987652 45555443322 3456778889998888776653 3333 3345667889999999999999999
Q ss_pred HcCCCCCHHHHHHHHH-HhhcCCcHHHHH-HHHHHhHHhh---------------------------------CCCCChh
Q 047840 257 KSGTQPTETTFVAVLT-TCTHAKMVRDGL-NLFENMSAVY---------------------------------GVEPQLE 301 (445)
Q Consensus 257 ~~~~~p~~~~~~~l~~-~~~~~~~~~~a~-~~~~~~~~~~---------------------------------~~~~~~~ 301 (445)
.. .||..-|...+. ++.+..+.-++. .+|....+.+ |+++
T Consensus 247 ~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~--- 321 (700)
T KOG1156|consen 247 ER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS--- 321 (700)
T ss_pred hh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---
Confidence 86 466665554443 333222222222 4444443321 2222
Q ss_pred HHHHHHHHHHhcCChHHHHH----HHHHHhcCC----------CCCCHHHHH--HHHHHHHHcCChHHHHHHHHHHHHhC
Q 047840 302 HYACVVDLLARAGMVEEAEK----FIEEKMGGL----------GGGDANVWG--ALLSACRIYGKIEVGNRVWRKLAEMG 365 (445)
Q Consensus 302 ~~~~l~~~~~~~g~~~~A~~----~~~~~~~~~----------~~~~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~~~~ 365 (445)
++..+...|-.....+-..+ +...+...| -+|....|. .++..+-..|+++.|...++.+++.-
T Consensus 322 vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHT 401 (700)
T KOG1156|consen 322 VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHT 401 (700)
T ss_pred hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 22222222221111111111 111111111 145555444 56677889999999999999999999
Q ss_pred CCCchhHHHHHHHHHHcCChHHHHHHHHHHHhcCCccCCcccEEEECCeEeEEecCCCCcchhhHHHHHH
Q 047840 366 ITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVI 435 (445)
Q Consensus 366 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (445)
|.-+..|..-++++...|..++|..++++..+..... ..+++.+--|.......+++.++...+
T Consensus 402 PTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aD------R~INsKcAKYmLrAn~i~eA~~~~skF 465 (700)
T KOG1156|consen 402 PTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTAD------RAINSKCAKYMLRANEIEEAEEVLSKF 465 (700)
T ss_pred chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchh------HHHHHHHHHHHHHccccHHHHHHHHHh
Confidence 9888888888999999999999999999988766532 223434434444444444444444443
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.18 E-value=8.7e-09 Score=94.28 Aligned_cols=234 Identities=12% Similarity=0.119 Sum_probs=175.0
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHHc-----C-CCCCHH-HHHHHHHHHHccCChhHHHHHHHHHHHc-----C--CC
Q 047840 130 SWSAIMAAYSRISDFKEVLSLFRQMQEV-----G-MKPNES-GLVSVLTACAHLGAITQGLWVHSYAKRY-----H--LE 195 (445)
Q Consensus 130 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~ 195 (445)
+...+...|...|+++.|..+++...+. | ..|... ..+.+...|...+++++|..+|+++... | .+
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4555889999999999999999987653 2 133333 3344777889999999999999998753 2 11
Q ss_pred CchhhhhHHHHHHHccCChHHHHHHhhcCCC----------CCh-hhHHHHHHHHHhcCChHHHHHHHHHHHHc---CCC
Q 047840 196 KNVILATAVVDMYSKCGHVHSALSVFEGISN----------KDA-GAWNAMISGVAMNGDAKKSLELFDRMVKS---GTQ 261 (445)
Q Consensus 196 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----------~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~~ 261 (445)
--..+++.|...|.+.|++++|..+++...+ +.+ ..++.+...+...+++++|..+++...+. -+.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 2245677788899999999988887765432 122 24666778889999999999999876542 122
Q ss_pred CC----HHHHHHHHHHhhcCCcHHHHHHHHHHhHHhh----C-CCCC-hhHHHHHHHHHHhcCChHHHHHHHHHHhc---
Q 047840 262 PT----ETTFVAVLTTCTHAKMVRDGLNLFENMSAVY----G-VEPQ-LEHYACVVDLLARAGMVEEAEKFIEEKMG--- 328 (445)
Q Consensus 262 p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--- 328 (445)
++ ..+++.+...|...|++++|.++++.+.... + ..+. ...++.|...|.+.+++.+|.++|.+...
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 33 3578999999999999999999999887642 1 1222 45667888899999999999998887532
Q ss_pred -CCC-CCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 047840 329 -GLG-GGD-ANVWGALLSACRIYGKIEVGNRVWRKLAE 363 (445)
Q Consensus 329 -~~~-~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 363 (445)
.|. .|+ ..+|..|...|...|+++.|+++.+.+..
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 221 233 46899999999999999999999998875
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.3e-08 Score=80.72 Aligned_cols=197 Identities=12% Similarity=0.059 Sum_probs=84.8
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCC---CChhhHHHHHHHHHhcC
Q 047840 167 VSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN---KDAGAWNAMISGVAMNG 243 (445)
Q Consensus 167 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~ 243 (445)
..+.-.|...|+...|..-+++.++.. |.+..++..+...|.+.|+.+.|.+.|++... .+..+.|....-+|..|
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCC
Confidence 334444455555555555555555443 33334444444444444444444444443322 23334444444444444
Q ss_pred ChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 047840 244 DAKKSLELFDRMVKSGTQP-TETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKF 322 (445)
Q Consensus 244 ~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 322 (445)
++++|...|++....-.-| -..||..+.-+..+.|+.+.|...|++..+. .+........+.......|++..|..+
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~--dp~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL--DPQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh--CcCCChHHHHHHHHHHhcccchHHHHH
Confidence 4444444444444331111 1233444444444444444444444444432 111123333444444444444444444
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 047840 323 IEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT 367 (445)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 367 (445)
++.....+ .++..+....|+.-...|+.+.+.+.=.++.+..|.
T Consensus 196 ~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~ 239 (250)
T COG3063 196 LERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPY 239 (250)
T ss_pred HHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 44444333 244444444444444444444444444444444443
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.17 E-value=8.2e-08 Score=80.65 Aligned_cols=300 Identities=14% Similarity=0.077 Sum_probs=220.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHH---HHHHcCCChHHHHHHhccCCCCChhhHHH---HHHHHH
Q 047840 66 PFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMV---DGYGKMGDFENARELFEKMPERNAVSWSA---IMAAYS 139 (445)
Q Consensus 66 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~---~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---l~~~~~ 139 (445)
+.-.--+.+.+...|++..|+.-|...++-|+..|.++- .+|...|+...|+.-|.+..+.-+.-+.+ -...+.
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vll 117 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLL 117 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhh
Confidence 334445667777889999999999988888887777664 56778888888888777776533333332 234678
Q ss_pred hcCCHhHHHHHHHHHHHcCCCCC--HH------------HHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHH
Q 047840 140 RISDFKEVLSLFRQMQEVGMKPN--ES------------GLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVV 205 (445)
Q Consensus 140 ~~~~~~~a~~~~~~~~~~~~~p~--~~------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 205 (445)
+.|.+++|..=|+..+.....-+ .. .....+..+...|+...|+.....+++.. +.+...+..-.
T Consensus 118 K~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Ra 196 (504)
T KOG0624|consen 118 KQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARA 196 (504)
T ss_pred hcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHH
Confidence 89999999999998887542111 11 12233455667889999999999998875 77888999999
Q ss_pred HHHHccCChHHHHHHhhcC---CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH----HHHH--------
Q 047840 206 DMYSKCGHVHSALSVFEGI---SNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETT----FVAV-------- 270 (445)
Q Consensus 206 ~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~----~~~l-------- 270 (445)
.+|...|++..|+.-++.. ...+..++..+-..+...|+.+.++...++..+. .||... |..+
T Consensus 197 kc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~le 274 (504)
T KOG0624|consen 197 KCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLE 274 (504)
T ss_pred HHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHH
Confidence 9999999999998776644 4457777888888889999999999999888774 566532 2111
Q ss_pred -HHHhhcCCcHHHHHHHHHHhHHhhCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 047840 271 -LTTCTHAKMVRDGLNLFENMSAVYGVEPQ-----LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSA 344 (445)
Q Consensus 271 -~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 344 (445)
+......++|.++..-.+...+. .|. ...+..+-.++...|++.+|++...+.++.. +.|+.++.--..+
T Consensus 275 s~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~dRAeA 350 (504)
T KOG0624|consen 275 SAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQVLCDRAEA 350 (504)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHHHHHHHHH
Confidence 11234567788888877777753 444 2234456677778899999999999988655 4558889888999
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCchhH
Q 047840 345 CRIYGKIEVGNRVWRKLAEMGITDFSTH 372 (445)
Q Consensus 345 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 372 (445)
|.-...++.|+.-|+.+.+.++.+..+-
T Consensus 351 ~l~dE~YD~AI~dye~A~e~n~sn~~~r 378 (504)
T KOG0624|consen 351 YLGDEMYDDAIHDYEKALELNESNTRAR 378 (504)
T ss_pred HhhhHHHHHHHHHHHHHHhcCcccHHHH
Confidence 9999999999999999999888765443
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.1e-07 Score=82.77 Aligned_cols=169 Identities=11% Similarity=0.078 Sum_probs=84.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCC---------
Q 047840 231 AWNAMISGVAMNGDAKKSLELFDRMVKSGTQPT---ETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP--------- 298 (445)
Q Consensus 231 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------- 298 (445)
.|..+...|-..|+.+.|..+|++..+-..+-- ..+|..-...=.+..+++.|+.+.+..... .-.|
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v-P~~~~~~~yd~~~ 467 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV-PTNPELEYYDNSE 467 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC-CCchhhhhhcCCC
Confidence 455666666666666666666666655322110 123333333333445566666666555432 1010
Q ss_pred --------ChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--C
Q 047840 299 --------QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT--D 368 (445)
Q Consensus 299 --------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~ 368 (445)
+...|...++.--..|-++....+|+++++..+ .++.+.......+-.+.-++++.+++++-+.+.+. -
T Consensus 468 pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLri-aTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v 546 (835)
T KOG2047|consen 468 PVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRI-ATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNV 546 (835)
T ss_pred cHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccH
Confidence 123344445555556666666666666666553 23333333333444455566666666666664432 2
Q ss_pred chhHHHHHHHHHH---cCChHHHHHHHHHHHhcCCcc
Q 047840 369 FSTHVLSYNIYKE---AGWDMEANKVRKLISETGMKK 402 (445)
Q Consensus 369 ~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~~ 402 (445)
..+|+..+..+.+ ..+.+.|..+|++..+ |.+|
T Consensus 547 ~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp 582 (835)
T KOG2047|consen 547 YDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPP 582 (835)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCH
Confidence 2233333332222 2356667777777666 4443
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.1e-07 Score=79.91 Aligned_cols=293 Identities=12% Similarity=0.073 Sum_probs=220.9
Q ss_pred HHHHHHHHHcCCChHHHHHHhccCCCCChhhHHHHH---HHHHhcCCHhHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHc
Q 047840 100 WTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIM---AAYSRISDFKEVLSLFRQMQEVGMKPNESGL-VSVLTACAH 175 (445)
Q Consensus 100 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~-~~l~~~~~~ 175 (445)
.-.+...+...|++..|+.-|....+-|+..|.++. ..|...|+..-|+.=+.+.++ ++||...- ..-...+.+
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK 118 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhh
Confidence 345677788899999999999999998888887765 478889999999999998887 57775332 233456789
Q ss_pred cCChhHHHHHHHHHHHcCCCCc--hh------------hhhHHHHHHHccCChHHHHHHhhcCCC---CChhhHHHHHHH
Q 047840 176 LGAITQGLWVHSYAKRYHLEKN--VI------------LATAVVDMYSKCGHVHSALSVFEGISN---KDAGAWNAMISG 238 (445)
Q Consensus 176 ~~~~~~a~~~~~~~~~~~~~~~--~~------------~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~ 238 (445)
.|.+++|..-|+..++.....+ .. .....+..+.-.|+...|+.....+.+ -|...+..-..+
T Consensus 119 ~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc 198 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKC 198 (504)
T ss_pred cccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHH
Confidence 9999999999999998752111 11 122334455677899999998887765 377788888899
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhH----HHHH--------
Q 047840 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEH----YACV-------- 306 (445)
Q Consensus 239 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~~l-------- 306 (445)
|...|.+..|+.-++...+..- -+..++--+-..+...|+.+.++...++.. .+.|+... |..|
T Consensus 199 ~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECL---KldpdHK~Cf~~YKklkKv~K~le 274 (504)
T KOG0624|consen 199 YIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECL---KLDPDHKLCFPFYKKLKKVVKSLE 274 (504)
T ss_pred HHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHH---ccCcchhhHHHHHHHHHHHHHHHH
Confidence 9999999999988887766532 355555566667788899999888888887 44676432 2211
Q ss_pred -HHHHHhcCChHHHHHHHHHHhcCCCCCCHH---HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHc
Q 047840 307 -VDLLARAGMVEEAEKFIEEKMGGLGGGDAN---VWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEA 382 (445)
Q Consensus 307 -~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 382 (445)
+....+.++|.++++..+..++........ .+..+-.++...|++.+|++...++++.+|++..++-.-+.+|.-.
T Consensus 275 s~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~d 354 (504)
T KOG0624|consen 275 SAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGD 354 (504)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhh
Confidence 122345678888888888877665221222 3445556677889999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhc
Q 047840 383 GWDMEANKVRKLISET 398 (445)
Q Consensus 383 g~~~~A~~~~~~m~~~ 398 (445)
..+++|+.-|+...+.
T Consensus 355 E~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 355 EMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999887664
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.17 E-value=6.5e-08 Score=81.61 Aligned_cols=407 Identities=10% Similarity=0.057 Sum_probs=245.9
Q ss_pred chhhcCCchHHHHHHHHHHhcCCCCCcccHHHHHHHhhhcCCchhHHHHHHHHHH--------------HhcC-------
Q 047840 4 GYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVV--------------KFGF------- 62 (445)
Q Consensus 4 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~--------------~~~~------- 62 (445)
.+.+.|++++|+..|..+.+.. .|+...+..+..+..-.|.+. +|..+-.... +.|-
T Consensus 66 C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~-eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~f 143 (557)
T KOG3785|consen 66 CYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYI-EAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTF 143 (557)
T ss_pred HHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHH-HHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHH
Confidence 4667899999999999887754 455565655666656666666 5665543221 1110
Q ss_pred ----CCChhhHHHHHHHHHhcCCHHHHHHHhccCCCC--ChhhHHH-HHHHHHcCCChHHHHHHhccCCC--C-ChhhHH
Q 047840 63 ----GEDPFVVSSLLEFYSLVHKMGTARALFDKSPDR--DVVTWTT-MVDGYGKMGDFENARELFEKMPE--R-NAVSWS 132 (445)
Q Consensus 63 ----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~ 132 (445)
..+...--+|....-..-.+.+|++++.++... +....|. +.-+|.+..-++-+.++++.... | ++.+-|
T Consensus 144 h~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~N 223 (557)
T KOG3785|consen 144 HSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKN 223 (557)
T ss_pred HHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHH
Confidence 111111223333333334677888888877653 3333443 33456677777766666554432 2 233333
Q ss_pred HHHHHHHhc--C---------------------------------CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 047840 133 AIMAAYSRI--S---------------------------------DFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLG 177 (445)
Q Consensus 133 ~l~~~~~~~--~---------------------------------~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 177 (445)
..+....+. | +-+.|++++-.+.+ +-| ..-..++-.|.+.+
T Consensus 224 Lkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~--~IP--EARlNL~iYyL~q~ 299 (557)
T KOG3785|consen 224 LKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMK--HIP--EARLNLIIYYLNQN 299 (557)
T ss_pred HHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHh--hCh--Hhhhhheeeecccc
Confidence 333322221 1 12333333333222 112 23334556678899
Q ss_pred ChhHHHHHHHHHHHcCCCCchhhh-------hHHHHHHHccCChHHHHHHhhcCCCC-----ChhhHHHHHHHHHhcCCh
Q 047840 178 AITQGLWVHSYAKRYHLEKNVILA-------TAVVDMYSKCGHVHSALSVFEGISNK-----DAGAWNAMISGVAMNGDA 245 (445)
Q Consensus 178 ~~~~a~~~~~~~~~~~~~~~~~~~-------~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~ 245 (445)
++.+|..+.+++. |.++.-| .++.+-.....+..-|.+.|.-+-.. ++.--.++.+.+.-..++
T Consensus 300 dVqeA~~L~Kdl~----PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qF 375 (557)
T KOG3785|consen 300 DVQEAISLCKDLD----PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQF 375 (557)
T ss_pred cHHHHHHHHhhcC----CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHH
Confidence 9999998887663 2222222 22222222233456677777654432 344567788888888899
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHH-HHHHHHHhcCChHHHHHHHH
Q 047840 246 KKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYA-CVVDLLARAGMVEEAEKFIE 324 (445)
Q Consensus 246 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~ 324 (445)
++.+-+++....-=...|.+.| .+..+++..|++.+|+++|-.+... .+ .|..+|. .|.++|.+++.++-|.+++-
T Consensus 376 ddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~-~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~l 452 (557)
T KOG3785|consen 376 DDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGP-EI-KNKILYKSMLARCYIRNKKPQLAWDMML 452 (557)
T ss_pred HHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcCh-hh-hhhHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 9999999988776444444444 4678888999999999999888732 22 4556665 56789999999999998887
Q ss_pred HHhcCCCCCCHHHHHH-HHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhcCCccC
Q 047840 325 EKMGGLGGGDANVWGA-LLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKK 403 (445)
Q Consensus 325 ~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 403 (445)
.+ +-+.+..+... +..-|.+.+.+--|-+.|..+...+|... -| .|+......+|..+.....+|.
T Consensus 453 k~---~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pE-nW---------eGKRGACaG~f~~l~~~~~~~~ 519 (557)
T KOG3785|consen 453 KT---NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPE-NW---------EGKRGACAGLFRQLANHKTDPI 519 (557)
T ss_pred hc---CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCcc-cc---------CCccchHHHHHHHHHcCCCCCC
Confidence 76 43344444444 44678899999999999999998888632 22 3555566678888887777777
Q ss_pred CcccEEEECCeEeEEecCCCCcchhhHHHHHHHHHHhc
Q 047840 404 PGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHSFLKM 441 (445)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (445)
|+... ..+++.+. ++.+.+.+-+.+++.++-+.
T Consensus 520 p~~~~---rEVvhllr--~~~nsq~E~mikvvrkwa~~ 552 (557)
T KOG3785|consen 520 PISQM---REVVHLLR--MKPNSQCEFMIKVVRKWAET 552 (557)
T ss_pred chhHH---HHHHHHHH--hCCCchHHHHHHHHHHHHHh
Confidence 76443 33333332 34555666666666666554
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.6e-07 Score=84.51 Aligned_cols=390 Identities=12% Similarity=0.115 Sum_probs=221.7
Q ss_pred HHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHH--HcCCC
Q 047840 35 PLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGY--GKMGD 112 (445)
Q Consensus 35 ~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~--~~~g~ 112 (445)
+=++.+...++++ .+.+....+...+ +.+...+.+-+.+..+.+.+++|..+.+.-........-.+=.+| .+.+.
T Consensus 17 t~ln~~~~~~e~e-~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 17 TDLNRHGKNGEYE-EAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNK 94 (652)
T ss_pred HHHHHhccchHHH-HHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHccc
Confidence 3455667788898 8888888888865 556677778888889999999999776654321111111123444 57899
Q ss_pred hHHHHHHhccCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 047840 113 FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKP-NESGLVSVLTACAHLGAITQGLWVHSYAKR 191 (445)
Q Consensus 113 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 191 (445)
.++|+..++-....+..+...-...+.+.|++++|+.+|+.+.+++.+- +...-..++.+-.. -.+ +.+..
T Consensus 95 ~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l~~----~~~q~ 166 (652)
T KOG2376|consen 95 LDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA----LQV----QLLQS 166 (652)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----hhH----HHHHh
Confidence 9999999996655565566677788999999999999999998765331 11111222211110 001 11222
Q ss_pred cCCCCc--hhhhhHHHHHHHccCChHHHHHHhhcC--------CCCCh-----h-----hHHHHHHHHHhcCChHHHHHH
Q 047840 192 YHLEKN--VILATAVVDMYSKCGHVHSALSVFEGI--------SNKDA-----G-----AWNAMISGVAMNGDAKKSLEL 251 (445)
Q Consensus 192 ~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~--------~~~~~-----~-----~~~~l~~~~~~~~~~~~a~~~ 251 (445)
....|+ -..+......+...|++..|+++++.. ...|. . .--.+.-.+...|+..+|..+
T Consensus 167 v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~i 246 (652)
T KOG2376|consen 167 VPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSI 246 (652)
T ss_pred ccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 222221 122223445667889999999998776 11111 1 122344456778999999999
Q ss_pred HHHHHHcCCCCCHHHH----HHHHHHhhcC---------------------------------------------CcHHH
Q 047840 252 FDRMVKSGTQPTETTF----VAVLTTCTHA---------------------------------------------KMVRD 282 (445)
Q Consensus 252 ~~~m~~~~~~p~~~~~----~~l~~~~~~~---------------------------------------------~~~~~ 282 (445)
+...++.+. +|.... |.++..-... +..+.
T Consensus 247 y~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q 325 (652)
T KOG2376|consen 247 YVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQ 325 (652)
T ss_pred HHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 988887643 343221 1111110000 01111
Q ss_pred HHHHHHHhHHhhCCCCChhHHHHHHHHHH--hcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 047840 283 GLNLFENMSAVYGVEPQLEHYACVVDLLA--RAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360 (445)
Q Consensus 283 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 360 (445)
+.++..... +..|. ..+..++..+. +.....+|.+++....+........+....+......|+++.|.+++..
T Consensus 326 ~r~~~a~lp---~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~ 401 (652)
T KOG2376|consen 326 VRELSASLP---GMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSL 401 (652)
T ss_pred HHHHHHhCC---ccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 111111110 12222 22333433322 2234677888887776654223355667777778889999999999883
Q ss_pred H--------HHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhcCCccCCcccEEEECCeEeEEecCCCCcchhhHHH
Q 047840 361 L--------AEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIY 432 (445)
Q Consensus 361 ~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (445)
. .+.. ..|.+...+...+.+.++.+.|..++....+.=....++. ............-.-.++...+..
T Consensus 402 ~~~~~~ss~~~~~-~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s--~~l~~~~~~aa~f~lr~G~~~ea~ 478 (652)
T KOG2376|consen 402 FLESWKSSILEAK-HLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGS--IALLSLMREAAEFKLRHGNEEEAS 478 (652)
T ss_pred Hhhhhhhhhhhhc-cChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccc--hHHHhHHHHHhHHHHhcCchHHHH
Confidence 3 2222 1345566677778888887778877777654321111111 111111222223334456677777
Q ss_pred HHHHHHHhcc
Q 047840 433 RVIHSFLKMS 442 (445)
Q Consensus 433 ~~~~~~~~~~ 442 (445)
+.++++.+..
T Consensus 479 s~leel~k~n 488 (652)
T KOG2376|consen 479 SLLEELVKFN 488 (652)
T ss_pred HHHHHHHHhC
Confidence 7777776643
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.8e-09 Score=89.95 Aligned_cols=248 Identities=11% Similarity=0.071 Sum_probs=170.1
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCCh
Q 047840 135 MAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHV 214 (445)
Q Consensus 135 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 214 (445)
++-+.-.|++..++.-.+ ........+......+.+++...|+.+.+. .++.... .|.......+...+...++-
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~ 82 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDK 82 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTH
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccch
Confidence 345667899999987666 322221223445566778888888876543 3343333 56666666555555444566
Q ss_pred HHHHHHhhcCC-CC----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHH
Q 047840 215 HSALSVFEGIS-NK----DAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFEN 289 (445)
Q Consensus 215 ~~a~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 289 (445)
+.+..-+++.. .+ +..........+...|++++|++++..- .+.......+..|.+.++++.|.+.++.
T Consensus 83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~ 156 (290)
T PF04733_consen 83 ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKN 156 (290)
T ss_dssp HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 66666665443 22 2222223335567789999999988642 3566667788899999999999999999
Q ss_pred hHHhhCCCCChhHHHHHHHHHHh----cCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 047840 290 MSAVYGVEPQLEHYACVVDLLAR----AGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMG 365 (445)
Q Consensus 290 ~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 365 (445)
|.+ +..|. +...++.++.. .+.+.+|..+|+++.+.. ++++.+.+.+..++...|++++|.++++++.+.+
T Consensus 157 ~~~---~~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~-~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~ 231 (290)
T PF04733_consen 157 MQQ---IDEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKF-GSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD 231 (290)
T ss_dssp HHC---CSCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS---SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-
T ss_pred HHh---cCCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 984 34443 34445554442 347999999999987764 6899999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHcCCh-HHHHHHHHHHHhc
Q 047840 366 ITDFSTHVLSYNIYKEAGWD-MEANKVRKLISET 398 (445)
Q Consensus 366 ~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~ 398 (445)
|.++.+...++.+....|+. +.+.+++..+...
T Consensus 232 ~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 232 PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 99999999999999999998 6677888887753
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.13 E-value=7.8e-08 Score=76.43 Aligned_cols=193 Identities=11% Similarity=0.035 Sum_probs=132.0
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHH
Q 047840 130 SWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYS 209 (445)
Q Consensus 130 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 209 (445)
+.-.|.-.|...|+...|..-+++.++.+ +-+..++..+...|.+.|..+.|.+.|+++.+.. +.+..+.|...-.+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 34556667777777777777777777753 2255677777777777777777777777777765 456667777777777
Q ss_pred ccCChHHHHHHhhcCCC-C----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHH
Q 047840 210 KCGHVHSALSVFEGISN-K----DAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGL 284 (445)
Q Consensus 210 ~~g~~~~a~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 284 (445)
..|++++|...|++... | ...+|..+.-+..+.|+++.|.+.|++..+.... ...+...+.....+.|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHH
Confidence 77777777777776543 3 3446777777777777777777777777765322 3455566666677777777777
Q ss_pred HHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHh
Q 047840 285 NLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKM 327 (445)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 327 (445)
..++..... ..++..+.-..|..-.+.|+-+.+-++=..+.
T Consensus 194 ~~~~~~~~~--~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 194 LYLERYQQR--GGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred HHHHHHHhc--ccccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 777777653 33666666666666677777766666555444
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.3e-06 Score=81.37 Aligned_cols=398 Identities=15% Similarity=0.111 Sum_probs=251.2
Q ss_pred hcCCchHHHHHHHHHHhcCCCCCcccHHHHHHHh---hhcCCchhHH-------------------HH----HHHHHHHh
Q 047840 7 QANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKAC---VILGPLENFG-------------------MF----VHAHVVKF 60 (445)
Q Consensus 7 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~---~~~~~~~~~a-------------------~~----~~~~~~~~ 60 (445)
..++.+.++.-+......+.+.+..++..+...+ ...++.+ ++ .. .+.++...
T Consensus 239 ~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~E-e~~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~ 317 (799)
T KOG4162|consen 239 KLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQE-EVILLLLIEESLIPRENIEDAILSLMLLLRKLRLK 317 (799)
T ss_pred CCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHH-HHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHh
Confidence 3456666777776666666655655555544332 2223333 22 11 11122222
Q ss_pred cCCCChhhHHHHHHHHHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHcCCChHHHHHHhccCCCCC-----hhhHH
Q 047840 61 GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPD---RDVVTWTTMVDGYGKMGDFENARELFEKMPERN-----AVSWS 132 (445)
Q Consensus 61 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~ 132 (445)
.+.-|..+|..+.-+....|+++.+.+.|++... ...+.|+.+...+...|....|..+++.-..+. +..+-
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 3556788888888899999999999999998765 356789999999999999999999998765422 22232
Q ss_pred HHHHHH-HhcCCHhHHHHHHHHHHHc--CC--CCCHHHHHHHHHHHHcc-----------CChhHHHHHHHHHHHcCCCC
Q 047840 133 AIMAAY-SRISDFKEVLSLFRQMQEV--GM--KPNESGLVSVLTACAHL-----------GAITQGLWVHSYAKRYHLEK 196 (445)
Q Consensus 133 ~l~~~~-~~~~~~~~a~~~~~~~~~~--~~--~p~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~ 196 (445)
..-..| -+.+..++++.+-.+.... +. ...+..|..+.-+|... ....++.+.+++..+.+ +.
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~~ 476 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-PT 476 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-CC
Confidence 222333 3456777777777666551 11 12334455555444321 12446778888888776 33
Q ss_pred chhhhhHHHHHHHccCChHHHHHHhhcCC----CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCC---------
Q 047840 197 NVILATAVVDMYSKCGHVHSALSVFEGIS----NKDAGAWNAMISGVAMNGDAKKSLELFDRMVKS-GTQP--------- 262 (445)
Q Consensus 197 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~p--------- 262 (445)
|+.+...+.--|+..++++.|.+..++.. ..+...|..+.-.+...+++.+|+.+.+..... |...
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i 556 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHI 556 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhh
Confidence 44444445556788889999988887654 357889999999999999999999998876543 2100
Q ss_pred ---------CHHHHHHHHHHhhc---------C--------------CcHHHHHHHHHHhHH-------hhC--------
Q 047840 263 ---------TETTFVAVLTTCTH---------A--------------KMVRDGLNLFENMSA-------VYG-------- 295 (445)
Q Consensus 263 ---------~~~~~~~l~~~~~~---------~--------------~~~~~a~~~~~~~~~-------~~~-------- 295 (445)
...|...++...-. . .+..++......+.. ..+
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s 636 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSS 636 (799)
T ss_pred hhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcc
Confidence 01111222211110 0 011111111111100 001
Q ss_pred -CCCC--------hhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 047840 296 -VEPQ--------LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366 (445)
Q Consensus 296 -~~~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 366 (445)
+.|+ ...|......+.+.+..++|...+.+..... +-.+..|......+...|+.++|.+.|..++..+|
T Consensus 637 ~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP 715 (799)
T KOG4162|consen 637 TVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDP 715 (799)
T ss_pred cccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCC
Confidence 1111 1234455666778888888888877776544 55667788788888899999999999999999999
Q ss_pred CCchhHHHHHHHHHHcCChHHHHH--HHHHHHhcCCccCCcccEE
Q 047840 367 TDFSTHVLSYNIYKEAGWDMEANK--VRKLISETGMKKKPGCSVI 409 (445)
Q Consensus 367 ~~~~~~~~l~~~~~~~g~~~~A~~--~~~~m~~~~~~~~~~~~~~ 409 (445)
+++.....++.++.+.|+..-|.. ++..+.+. +|.....|.
T Consensus 716 ~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~--dp~n~eaW~ 758 (799)
T KOG4162|consen 716 DHVPSMTALAELLLELGSPRLAEKRSLLSDALRL--DPLNHEAWY 758 (799)
T ss_pred CCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh--CCCCHHHHH
Confidence 999999999999999999888888 77777664 444444453
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.2e-07 Score=75.69 Aligned_cols=382 Identities=12% Similarity=0.031 Sum_probs=239.8
Q ss_pred hchhhcCCchHHHHHHHHHHhcCCCCCcccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHH-HHHHHHhcCC
Q 047840 3 RGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSS-LLEFYSLVHK 81 (445)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~ 81 (445)
..+.+..+++.|++++..-.++. +.+....+.+..+|....++. .|...++++-.. .|...-|.. -...+-+.+.
T Consensus 18 y~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~-~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i 93 (459)
T KOG4340|consen 18 YRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFA-LAAECYEQLGQL--HPELEQYRLYQAQSLYKACI 93 (459)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHH-HHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcc
Confidence 34577788999999988877654 227777888888889999999 888888887763 344433321 2334456788
Q ss_pred HHHHHHHhccCCCC-ChhhHHHHHH--HHHcCCChHHHHHHhccCCC-CChhhHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 047840 82 MGTARALFDKSPDR-DVVTWTTMVD--GYGKMGDFENARELFEKMPE-RNAVSWSAIMAAYSRISDFKEVLSLFRQMQEV 157 (445)
Q Consensus 82 ~~~a~~~~~~~~~~-~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 157 (445)
+..|.++...+... +...-..-+. .....+++..+..+.++.+. .+..+.+.......+.|+++.|++-|+...+-
T Consensus 94 ~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqv 173 (459)
T KOG4340|consen 94 YADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQV 173 (459)
T ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhh
Confidence 88888888877663 2222112222 23457888899999999884 66777777777788999999999999998764
Q ss_pred -CCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-------------chh--------hhhHHH-------HHH
Q 047840 158 -GMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEK-------------NVI--------LATAVV-------DMY 208 (445)
Q Consensus 158 -~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------------~~~--------~~~~l~-------~~~ 208 (445)
|.. ....|+..+. ..+.++.+.|.++..++++.|+.. |+. .-..++ ..+
T Consensus 174 sGyq-pllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIe 251 (459)
T KOG4340|consen 174 SGYQ-PLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIE 251 (459)
T ss_pred cCCC-chhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhh
Confidence 444 4456766554 457789999999999998887542 111 112233 335
Q ss_pred HccCChHHHHHHhhcCCCC-----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHH
Q 047840 209 SKCGHVHSALSVFEGISNK-----DAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDG 283 (445)
Q Consensus 209 ~~~g~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 283 (445)
.+.|+++.|.+.+..|+.+ |++|...+.-. -..+++.+..+-+.-+...+. ....||..++-.||+..-++.|
T Consensus 252 yq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lA 329 (459)
T KOG4340|consen 252 YQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLA 329 (459)
T ss_pred hhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHH
Confidence 6789999999999999864 66666554322 224556666666666666544 3467888888889998888888
Q ss_pred HHHHHHhHHhhCC-CCChhHHHHHHHHHHh-cCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCC---hHHHHHHH
Q 047840 284 LNLFENMSAVYGV-EPQLEHYACVVDLLAR-AGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGK---IEVGNRVW 358 (445)
Q Consensus 284 ~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~ 358 (445)
-.++.+-... .. -.+...|+ |++++.- .-..++|.+-++.+...- ..-......-++.-....+ ...+++-+
T Consensus 330 ADvLAEn~~l-Tyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l-~~kLRklAi~vQe~r~~~dd~a~R~ai~~Y 406 (459)
T KOG4340|consen 330 ADVLAENAHL-TYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGML-TEKLRKLAIQVQEARHNRDDEAIRKAVNEY 406 (459)
T ss_pred HHHHhhCcch-hHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 8877554321 11 12333333 3344333 345566666555442110 0000001111111111111 12333444
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 359 RKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 359 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
++.+++-.+ ....-++.|.+..++..++++|+.-.+.
T Consensus 407 d~~LE~YLP---VlMa~AkiyW~~~Dy~~vEk~Fr~Svef 443 (459)
T KOG4340|consen 407 DETLEKYLP---VLMAQAKIYWNLEDYPMVEKIFRKSVEF 443 (459)
T ss_pred HHHHHHHHH---HHHHHHHhhccccccHHHHHHHHHHHhh
Confidence 444443322 4556678899999999999999877654
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.09 E-value=5e-07 Score=82.14 Aligned_cols=262 Identities=12% Similarity=-0.016 Sum_probs=152.9
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHc
Q 047840 135 MAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH----LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSK 210 (445)
Q Consensus 135 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 210 (445)
...+...|++++|.+.+++..+.. +.|...+.. ...+.. .+..+.+.+.+.. .....+........+...+..
T Consensus 50 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~ 126 (355)
T cd05804 50 ALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEE 126 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHH
Confidence 345567788888888888877642 223333332 222222 3344444444433 111112223344455667788
Q ss_pred cCChHHHHHHhhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCH--HHHHHHHHHhhcCCcHHHHH
Q 047840 211 CGHVHSALSVFEGISN---KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGT-QPTE--TTFVAVLTTCTHAKMVRDGL 284 (445)
Q Consensus 211 ~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~--~~~~~l~~~~~~~~~~~~a~ 284 (445)
.|++++|...+++... .+...+..+...+...|++++|+..+++...... .|+. ..|..+...+...|++++|.
T Consensus 127 ~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 206 (355)
T cd05804 127 AGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAAL 206 (355)
T ss_pred cCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHH
Confidence 8888888888877654 3455677777888888889999888888776432 1222 34556777788889999999
Q ss_pred HHHHHhHHhhCCCCChhHH-H--HHHHHHHhcCChHHHHHH---HHHHhcC-CCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 047840 285 NLFENMSAVYGVEPQLEHY-A--CVVDLLARAGMVEEAEKF---IEEKMGG-LGGGDANVWGALLSACRIYGKIEVGNRV 357 (445)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~-~--~l~~~~~~~g~~~~A~~~---~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 357 (445)
.++++........+..... + .++.-+...|....+.++ ....... ..............++...|+.+.|..+
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~ 286 (355)
T cd05804 207 AIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKL 286 (355)
T ss_pred HHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHH
Confidence 9998875321111111111 1 222333334433333332 1211111 0011222233566677888999999999
Q ss_pred HHHHHHhCCC---------CchhHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 047840 358 WRKLAEMGIT---------DFSTHVLSYNIYKEAGWDMEANKVRKLISETG 399 (445)
Q Consensus 358 ~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 399 (445)
++.+....-. ........+.++...|++++|.+.+......+
T Consensus 287 L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 287 LAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 9988762211 23344566778889999999999998887654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.6e-07 Score=80.84 Aligned_cols=357 Identities=12% Similarity=0.068 Sum_probs=235.7
Q ss_pred HHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHhccCCC--CC-hhhHHHHHHHHHcCCChH
Q 047840 38 KACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPD--RD-VVTWTTMVDGYGKMGDFE 114 (445)
Q Consensus 38 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~g~~~ 114 (445)
.+.+..|+++ .|...|-..+.... +|...|..-..+|++.|++++|.+--.+-.+ |+ +..|+....++.-.|+++
T Consensus 10 naa~s~~d~~-~ai~~~t~ai~l~p-~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 10 NAAFSSGDFE-TAIRLFTEAIMLSP-TNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred HhhcccccHH-HHHHHHHHHHccCC-CccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHH
Confidence 4456789999 89999988887663 4778888888999999999999876655433 44 457999999999999999
Q ss_pred HHHHHhccCCC--C-ChhhHHHHHHHHHhcCCHhHHH---HHHHHHHHc---CCCCCHHHHHHHHHHHHcc-------CC
Q 047840 115 NARELFEKMPE--R-NAVSWSAIMAAYSRISDFKEVL---SLFRQMQEV---GMKPNESGLVSVLTACAHL-------GA 178 (445)
Q Consensus 115 ~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~---~~~~~~~~~---~~~p~~~~~~~l~~~~~~~-------~~ 178 (445)
+|+..|.+-.+ | |...++.+..++.......+.. .++..+... ........|..++...-+. .+
T Consensus 88 eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~ 167 (539)
T KOG0548|consen 88 EAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLN 167 (539)
T ss_pred HHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccc
Confidence 99999998775 3 4556666666662111110000 001110000 0000112233333222111 01
Q ss_pred hhHHHHHHHHHH--------HcC-------CCC----------------------chhhhhHHHHHHHccCChHHHHHHh
Q 047840 179 ITQGLWVHSYAK--------RYH-------LEK----------------------NVILATAVVDMYSKCGHVHSALSVF 221 (445)
Q Consensus 179 ~~~a~~~~~~~~--------~~~-------~~~----------------------~~~~~~~l~~~~~~~g~~~~a~~~~ 221 (445)
.....+..-.+. ..+ ..| -..-...+.++..+..+++.|.+-+
T Consensus 168 d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y 247 (539)
T KOG0548|consen 168 DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHY 247 (539)
T ss_pred cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHH
Confidence 111111111111 000 011 0112345778888888999999988
Q ss_pred hcCCCC--ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH-------HHHHHHhhcCCcHHHHHHHHHHhHH
Q 047840 222 EGISNK--DAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTF-------VAVLTTCTHAKMVRDGLNLFENMSA 292 (445)
Q Consensus 222 ~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-------~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (445)
...... +..-++....+|...|.+..+........+.|-. ...-| ..+..+|.+.++++.+...|.+...
T Consensus 248 ~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLt 326 (539)
T KOG0548|consen 248 AKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALT 326 (539)
T ss_pred HHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhh
Confidence 876553 4445666677888888888888777776665532 22222 2233456667888888888887765
Q ss_pred hhCCCCChhH-------------------------HHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 047840 293 VYGVEPQLEH-------------------------YACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRI 347 (445)
Q Consensus 293 ~~~~~~~~~~-------------------------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 347 (445)
. ...|+... ...-...+.+.|++..|...|.+++... |.|...|....-+|.+
T Consensus 327 e-~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~k 404 (539)
T KOG0548|consen 327 E-HRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLK 404 (539)
T ss_pred h-hcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHH
Confidence 4 22232211 1111345667899999999999999888 7889999999999999
Q ss_pred cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 047840 348 YGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETG 399 (445)
Q Consensus 348 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 399 (445)
.|.+..|+.-.+..++++|+....|..=+.++....+|+.|.+.|.+-.+..
T Consensus 405 L~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 405 LGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999998876654
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.2e-06 Score=76.10 Aligned_cols=270 Identities=11% Similarity=0.052 Sum_probs=172.9
Q ss_pred hhhHHHHHHHHHhcCCHhHHHHHHHHHHHcC-CCCCHH-HHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhH--
Q 047840 128 AVSWSAIMAAYSRISDFKEVLSLFRQMQEVG-MKPNES-GLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATA-- 203 (445)
Q Consensus 128 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-- 203 (445)
...|..+...+...|+.+.+.+.+....... ..++.. ........+...|++++|..++++..+.. |.+...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhH
Confidence 4467777778888888888877777765432 122322 22233445678899999999999998874 444444432
Q ss_pred -HHHHHHccCChHHHHHHhhcCCCCC---hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCc
Q 047840 204 -VVDMYSKCGHVHSALSVFEGISNKD---AGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKM 279 (445)
Q Consensus 204 -l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 279 (445)
........+..+.+.+.+......+ ......+...+...|++++|...+++..+.. +.+...+..+...+...|+
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCC
Confidence 2222223456666666666533322 2344456678889999999999999998864 3356677788888999999
Q ss_pred HHHHHHHHHHhHHhhCCCCCh--hHHHHHHHHHHhcCChHHHHHHHHHHhcCCC-CCCHHHH-H--HHHHHHHHcCChHH
Q 047840 280 VRDGLNLFENMSAVYGVEPQL--EHYACVVDLLARAGMVEEAEKFIEEKMGGLG-GGDANVW-G--ALLSACRIYGKIEV 353 (445)
Q Consensus 280 ~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~g~~~~ 353 (445)
+++|...++.........|+. ..|..+...+...|++++|..++++...... .+..... + .++.-+...|....
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~ 243 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDV 243 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCCh
Confidence 999999999988642212332 3455688889999999999999999864431 1222211 1 22333344454443
Q ss_pred HHHHHHHHHH----hCCC--CchhHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 047840 354 GNRVWRKLAE----MGIT--DFSTHVLSYNIYKEAGWDMEANKVRKLISETGM 400 (445)
Q Consensus 354 a~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 400 (445)
+.+. +.+.. ..+. ........+.++...|+.++|..+++.+.....
T Consensus 244 ~~~w-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~ 295 (355)
T cd05804 244 GDRW-EDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRAS 295 (355)
T ss_pred HHHH-HHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 3333 22222 1122 122223677788899999999999999876543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=2e-06 Score=88.45 Aligned_cols=362 Identities=9% Similarity=-0.023 Sum_probs=215.2
Q ss_pred HHHHHHhhhcCCchhHHHHHHHHHHHhcCCCCh-hhHHHHHHHHHhcCCHHHHHHHhccCCC----CChhhHHHHHHHHH
Q 047840 34 PPLIKACVILGPLENFGMFVHAHVVKFGFGEDP-FVVSSLLEFYSLVHKMGTARALFDKSPD----RDVVTWTTMVDGYG 108 (445)
Q Consensus 34 ~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~ 108 (445)
......+...|++. .+.... ...+..+.. .............|+++.+..+++.+.. .++.........+.
T Consensus 345 ~raa~~~~~~g~~~-~Al~~a---~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~ 420 (903)
T PRK04841 345 RAAAEAWLAQGFPS-EAIHHA---LAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQ 420 (903)
T ss_pred HHHHHHHHHCCCHH-HHHHHH---HHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHH
Confidence 34445566667766 444433 222211110 1112223344556788888777776632 23333334445556
Q ss_pred cCCChHHHHHHhccCCC----C----C----hhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCH----HHHHHHHHH
Q 047840 109 KMGDFENARELFEKMPE----R----N----AVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNE----SGLVSVLTA 172 (445)
Q Consensus 109 ~~g~~~~A~~~~~~~~~----~----~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~ 172 (445)
..|++++|...+..... . + ......+...+...|++++|...+++....-...+. ...+.+...
T Consensus 421 ~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~ 500 (903)
T PRK04841 421 SQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEV 500 (903)
T ss_pred HCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence 77888888887765421 1 1 111222334566789999999999887653111121 234455666
Q ss_pred HHccCChhHHHHHHHHHHHcCC---CC--chhhhhHHHHHHHccCChHHHHHHhhcCCC-------CC----hhhHHHHH
Q 047840 173 CAHLGAITQGLWVHSYAKRYHL---EK--NVILATAVVDMYSKCGHVHSALSVFEGISN-------KD----AGAWNAMI 236 (445)
Q Consensus 173 ~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~~----~~~~~~l~ 236 (445)
+...|++++|...+++.....- .+ .......+...+...|+++.|...+++... ++ ...+..+.
T Consensus 501 ~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 580 (903)
T PRK04841 501 HHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRA 580 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence 7788999999988888764311 11 123445566778888999999888765432 11 12334455
Q ss_pred HHHHhcCChHHHHHHHHHHHHc--CCCCC--HHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHH-----HHHH
Q 047840 237 SGVAMNGDAKKSLELFDRMVKS--GTQPT--ETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHY-----ACVV 307 (445)
Q Consensus 237 ~~~~~~~~~~~a~~~~~~m~~~--~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~~l~ 307 (445)
..+...|++++|...+.+.... ...+. ...+..+...+...|+.+.|...+...............+ ...+
T Consensus 581 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 660 (903)
T PRK04841 581 QLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRL 660 (903)
T ss_pred HHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHH
Confidence 6677789999999888876542 11122 2334445556778899999998888875421111111111 1122
Q ss_pred HHHHhcCChHHHHHHHHHHhcCCCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC------CCchhHHHHHHH
Q 047840 308 DLLARAGMVEEAEKFIEEKMGGLGGGD---ANVWGALLSACRIYGKIEVGNRVWRKLAEMGI------TDFSTHVLSYNI 378 (445)
Q Consensus 308 ~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~------~~~~~~~~l~~~ 378 (445)
..+...|+.+.|..++........... ...+..+..++...|+.++|...++++..... ....+...++.+
T Consensus 661 ~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a 740 (903)
T PRK04841 661 IYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQL 740 (903)
T ss_pred HHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 344567889999998877654221111 11244566778888999999999998877421 123456678888
Q ss_pred HHHcCChHHHHHHHHHHHhcC
Q 047840 379 YKEAGWDMEANKVRKLISETG 399 (445)
Q Consensus 379 ~~~~g~~~~A~~~~~~m~~~~ 399 (445)
+.+.|+.++|...+.+..+..
T Consensus 741 ~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 741 YWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHh
Confidence 999999999999888887644
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.7e-07 Score=76.44 Aligned_cols=148 Identities=9% Similarity=0.061 Sum_probs=109.3
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCCh
Q 047840 237 SGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMV 316 (445)
Q Consensus 237 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 316 (445)
..|...|+++.+....+.+.. |. ..+...++.+++...++...+. -+.+...|..+...|...|++
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCH
Confidence 457777777776444322211 11 0122356677777777777653 356678888888888899999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHH-HHcCC--hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHH
Q 047840 317 EEAEKFIEEKMGGLGGGDANVWGALLSAC-RIYGK--IEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRK 393 (445)
Q Consensus 317 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 393 (445)
++|...|++..... +.+...+..+..++ ...|+ .++|.++++++++.+|.++.++..++..+.+.|++++|...++
T Consensus 90 ~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 90 DNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999998888776 56778888888764 56676 4889999999999999888888899999999999999999998
Q ss_pred HHHhcC
Q 047840 394 LISETG 399 (445)
Q Consensus 394 ~m~~~~ 399 (445)
++.+..
T Consensus 169 ~aL~l~ 174 (198)
T PRK10370 169 KVLDLN 174 (198)
T ss_pred HHHhhC
Confidence 887643
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=2e-06 Score=80.68 Aligned_cols=346 Identities=11% Similarity=0.070 Sum_probs=187.3
Q ss_pred chhhcCCchHHHHHHHHHHhcCCCCCcccHHHHHHHhhhcCCchhHHHHHHHHHHHh-c--------CCCChhhHHHHHH
Q 047840 4 GYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF-G--------FGEDPFVVSSLLE 74 (445)
Q Consensus 4 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~-~--------~~~~~~~~~~l~~ 74 (445)
.|...|+.+.|.+-++-+. +...|..+.+.|.+.++++ -|.-.+-.|... | -.|+ .+-..+..
T Consensus 737 fyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLD-VAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAv 808 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLD-VAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAV 808 (1416)
T ss_pred EEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhcccc-HHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHH
Confidence 3556677777776666543 3345777777777777666 555554444321 0 1122 22223333
Q ss_pred HHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHHcCCChHHHHHHhccCCC-CChhhHHHHHHHHHhcCCHhHHHHHHHH
Q 047840 75 FYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPE-RNAVSWSAIMAAYSRISDFKEVLSLFRQ 153 (445)
Q Consensus 75 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 153 (445)
.....|.+++|+.+|.+-.. |..|-..|-..|.+++|.++-+.-.. .--.||......+-..++.+.|++.|++
T Consensus 809 LAieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK 883 (1416)
T KOG3617|consen 809 LAIELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEK 883 (1416)
T ss_pred HHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHh
Confidence 44566777777777665443 33344555566777777666544322 1223555555666666677777777665
Q ss_pred HHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCCCChhhHH
Q 047840 154 MQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWN 233 (445)
Q Consensus 154 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 233 (445)
... |-...+..|. .++...+++.+.+ .|...|......+-..|+.+.|+.+|.... -|.
T Consensus 884 ~~~----hafev~rmL~------e~p~~~e~Yv~~~------~d~~L~~WWgqYlES~GemdaAl~~Y~~A~-----D~f 942 (1416)
T KOG3617|consen 884 AGV----HAFEVFRMLK------EYPKQIEQYVRRK------RDESLYSWWGQYLESVGEMDAALSFYSSAK-----DYF 942 (1416)
T ss_pred cCC----hHHHHHHHHH------hChHHHHHHHHhc------cchHHHHHHHHHHhcccchHHHHHHHHHhh-----hhh
Confidence 311 1111111111 1122222222222 245666666677777788888888877554 356
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhC-CC--CChhHHHHHHHHH
Q 047840 234 AMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG-VE--PQLEHYACVVDLL 310 (445)
Q Consensus 234 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~--~~~~~~~~l~~~~ 310 (445)
.++...|-.|+.++|-++-++- -|......+.+.|-..|++.+|..+|.+...-.+ +. .....-.-|...+
T Consensus 943 s~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nla 1016 (1416)
T KOG3617|consen 943 SMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLA 1016 (1416)
T ss_pred hheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 6666777778888777765542 2445555677778888888888877766652100 00 0000001111111
Q ss_pred H--hcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH---------H-HHhCCC-CchhHHHHHH
Q 047840 311 A--RAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK---------L-AEMGIT-DFSTHVLSYN 377 (445)
Q Consensus 311 ~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~---------~-~~~~~~-~~~~~~~l~~ 377 (445)
. ...+.-.|.++|++. |.. ....+..|.+.|.+.+|+++-=+ + .+++|. ||.....-++
T Consensus 1017 l~s~~~d~v~aArYyEe~---g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~Rcad 1088 (1416)
T KOG3617|consen 1017 LMSGGSDLVSAARYYEEL---GGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCAD 1088 (1416)
T ss_pred hhcCchhHHHHHHHHHHc---chh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 1 122334455555554 321 22334456677777777654321 1 225565 7777777888
Q ss_pred HHHHcCChHHHHHHHHHHHh
Q 047840 378 IYKEAGWDMEANKVRKLISE 397 (445)
Q Consensus 378 ~~~~~g~~~~A~~~~~~m~~ 397 (445)
.+....+++.|..++-..++
T Consensus 1089 FF~~~~qyekAV~lL~~ar~ 1108 (1416)
T KOG3617|consen 1089 FFENNQQYEKAVNLLCLARE 1108 (1416)
T ss_pred HHHhHHHHHHHHHHHHHHHH
Confidence 88888888888887766554
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.1e-06 Score=81.25 Aligned_cols=259 Identities=12% Similarity=0.168 Sum_probs=131.3
Q ss_pred HHHHHHHhcCCHHHHHHHhcc--CCCCChhhHHHHHHHHHcCCChHHHHHHhccCCCCChh-------------------
Q 047840 71 SLLEFYSLVHKMGTARALFDK--SPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAV------------------- 129 (445)
Q Consensus 71 ~l~~~~~~~g~~~~a~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------------------- 129 (445)
+.+..|.+.|.+-.|.+.-.. ....|......+..++.+..-++.|-++|+++..++..
T Consensus 620 aaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarf 699 (1636)
T KOG3616|consen 620 AAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARF 699 (1636)
T ss_pred HHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHh
Confidence 457778888887777665322 22235555555555555555555555555555433211
Q ss_pred --------hHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhh
Q 047840 130 --------SWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILA 201 (445)
Q Consensus 130 --------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 201 (445)
.-......+...|+++.|+..|-+.. ...-.+.+......+.+|+.+++.+.... .-..-|
T Consensus 700 afp~evv~lee~wg~hl~~~~q~daainhfiea~---------~~~kaieaai~akew~kai~ildniqdqk--~~s~yy 768 (1636)
T KOG3616|consen 700 AFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYY 768 (1636)
T ss_pred hCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccc
Confidence 01112222333344444443332211 01122334445556666666666666553 223345
Q ss_pred hHHHHHHHccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHH
Q 047840 202 TAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVR 281 (445)
Q Consensus 202 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 281 (445)
..+.+.|...|+++.|.++|.+.- .++-.|..|.+.|+|+.|.++-.+. .|.......|..-..-+-..|++.
T Consensus 769 ~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~kla~e~--~~~e~t~~~yiakaedldehgkf~ 841 (1636)
T KOG3616|consen 769 GEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFA 841 (1636)
T ss_pred hHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchh
Confidence 556666777777777777775432 3445566677777777776665443 233334444544444455666666
Q ss_pred HHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 047840 282 DGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360 (445)
Q Consensus 282 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 360 (445)
+|.++|-.+. .|+. -|..|-+.|..+..+++..+-. | ..-..|...+..-+-..|+...|..-|-+
T Consensus 842 eaeqlyiti~-----~p~~-----aiqmydk~~~~ddmirlv~k~h--~-d~l~dt~~~f~~e~e~~g~lkaae~~fle 907 (1636)
T KOG3616|consen 842 EAEQLYITIG-----EPDK-----AIQMYDKHGLDDDMIRLVEKHH--G-DHLHDTHKHFAKELEAEGDLKAAEEHFLE 907 (1636)
T ss_pred hhhheeEEcc-----CchH-----HHHHHHhhCcchHHHHHHHHhC--h-hhhhHHHHHHHHHHHhccChhHHHHHHHh
Confidence 6666554442 2332 2445556666666665555431 0 11123344444555555555555544443
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.92 E-value=5.4e-07 Score=74.42 Aligned_cols=305 Identities=11% Similarity=0.037 Sum_probs=149.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHhccCCCC---ChhhHHHHHHHHHcCCChHHHHHHhccCCC--CChhhHHH-HHHHHHhcC
Q 047840 69 VSSLLEFYSLVHKMGTARALFDKSPDR---DVVTWTTMVDGYGKMGDFENARELFEKMPE--RNAVSWSA-IMAAYSRIS 142 (445)
Q Consensus 69 ~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~-l~~~~~~~~ 142 (445)
+++++..+.+..+++.|++++..-.++ +....+.|..+|....++..|-..++++.. |...-|.. -...+.+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~ 92 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKAC 92 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhc
Confidence 455555566667777777766544332 334455566666666666666666666543 32222221 234455566
Q ss_pred CHhHHHHHHHHHHHcCCCCCHHHHHHHH--HHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHH
Q 047840 143 DFKEVLSLFRQMQEVGMKPNESGLVSVL--TACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSV 220 (445)
Q Consensus 143 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 220 (445)
.+..|+++...|.+. |+...-..-+ ......+++..+..+.++.-..| +..+.+.......+.|+++.|.+-
T Consensus 93 i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 93 IYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred ccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHH
Confidence 666666666655432 1111111111 11233445555555544443221 233333333444555555555555
Q ss_pred hhcCCCC----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH-----HHHHhhcCCcHHHHHHHHHHhH
Q 047840 221 FEGISNK----DAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVA-----VLTTCTHAKMVRDGLNLFENMS 291 (445)
Q Consensus 221 ~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-----l~~~~~~~~~~~~a~~~~~~~~ 291 (445)
|+...+- ...+|+..+..| +.++++.|+++..+++++|++..+. ++. .+.+ ...|+. ..+....
T Consensus 167 FqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPE-lgIGm~tegiDv-rsvgNt---~~lh~Sa- 239 (459)
T KOG4340|consen 167 FQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPE-LGIGMTTEGIDV-RSVGNT---LVLHQSA- 239 (459)
T ss_pred HHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCc-cCccceeccCch-hcccch---HHHHHHH-
Confidence 5544431 223444433332 3445555555555555555431111 000 0000 000000 0000000
Q ss_pred HhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCch
Q 047840 292 AVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGG-LGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFS 370 (445)
Q Consensus 292 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 370 (445)
=...+|.-...+.+.|+++.|.+-+-.|--. .-..|+.|...+.-.= ..+++....+-+.-+++..|-.+.
T Consensus 240 -------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPfP~E 311 (459)
T KOG4340|consen 240 -------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPFPPE 311 (459)
T ss_pred -------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCCChH
Confidence 0111222223345678888888877776321 1134667766554322 234555666666667777776777
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHH
Q 047840 371 THVLSYNIYKEAGWDMEANKVRKL 394 (445)
Q Consensus 371 ~~~~l~~~~~~~g~~~~A~~~~~~ 394 (445)
++..+.-.|++..-++-|..++.+
T Consensus 312 TFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 312 TFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHHHHHHhhhHHHhHHHHHHhh
Confidence 888888888888888888777653
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.92 E-value=5.8e-07 Score=78.75 Aligned_cols=238 Identities=11% Similarity=-0.029 Sum_probs=134.2
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccC-ChhHHHHHHHHHHHcCCCCchhhhhHHHHHH
Q 047840 131 WSAIMAAYSRISDFKEVLSLFRQMQEVGMKP-NESGLVSVLTACAHLG-AITQGLWVHSYAKRYHLEKNVILATAVVDMY 208 (445)
Q Consensus 131 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 208 (445)
+..+-..+...++.++|+.++.+++.. .| +...|+....++...| ++++++..++++.+.+ +.+..+|+...-
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~-- 114 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRW-- 114 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHH--
Confidence 444445555666777777777776663 23 3334444444444444 3555666665555543 233333433322
Q ss_pred HccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHH
Q 047840 209 SKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGD--AKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNL 286 (445)
Q Consensus 209 ~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 286 (445)
.+.+.|+ .++++.+++++.+...+ |..+|+.....+...|+++++++.
T Consensus 115 -----------------------------~l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~ 164 (320)
T PLN02789 115 -----------------------------LAEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEY 164 (320)
T ss_pred -----------------------------HHHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHH
Confidence 2222332 24455666666554332 555666666666666666666666
Q ss_pred HHHhHHhhCCCCChhHHHHHHHHHHhc---CC----hHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHc----CChHHHH
Q 047840 287 FENMSAVYGVEPQLEHYACVVDLLARA---GM----VEEAEKFIEEKMGGLGGGDANVWGALLSACRIY----GKIEVGN 355 (445)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~----~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~ 355 (445)
++++.+. + ..|...|+....++.+. |. .+++..+..+++... +-|...|+.+...+... ++..+|.
T Consensus 165 ~~~~I~~-d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~ 241 (320)
T PLN02789 165 CHQLLEE-D-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVS 241 (320)
T ss_pred HHHHHHH-C-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHH
Confidence 6666653 2 23344454444333333 22 245666666666555 56777787777777663 3446688
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHcC------------------ChHHHHHHHHHHHhcCCccCCcccE
Q 047840 356 RVWRKLAEMGITDFSTHVLSYNIYKEAG------------------WDMEANKVRKLISETGMKKKPGCSV 408 (445)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g------------------~~~~A~~~~~~m~~~~~~~~~~~~~ 408 (445)
+.+.++...+|.++.+...|++.|.... ..++|.++++.+. ..+|-...+|
T Consensus 242 ~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~--~~d~ir~~yw 310 (320)
T PLN02789 242 SVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE--VADPMRRNYW 310 (320)
T ss_pred HHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH--hhCcHHHHHH
Confidence 8888877777877778888888887632 2366888888773 4444433344
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.4e-07 Score=77.78 Aligned_cols=180 Identities=10% Similarity=0.036 Sum_probs=104.0
Q ss_pred hhhhhHHHHHHHccCChHHHHHHhhcCCCC---Ch---hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHH
Q 047840 198 VILATAVVDMYSKCGHVHSALSVFEGISNK---DA---GAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTE--TTFVA 269 (445)
Q Consensus 198 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~ 269 (445)
...+..+...+.+.|+++.|...|+++... +. .++..+..++...|++++|+..++++.+....... .++..
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 112 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence 344555555666666666666666654431 11 24455556666666666666666666554221111 12333
Q ss_pred HHHHhhcC--------CcHHHHHHHHHHhHHhhCCCCCh-hHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHH
Q 047840 270 VLTTCTHA--------KMVRDGLNLFENMSAVYGVEPQL-EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGA 340 (445)
Q Consensus 270 l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 340 (445)
+..++... |+.++|.+.++.+... .|+. ..+..+..... .... . ......
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~~----~~~~------~--------~~~~~~ 171 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMDY----LRNR------L--------AGKELY 171 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHHH----HHHH------H--------HHHHHH
Confidence 33333332 4555666666666543 2322 12211111100 0000 0 001124
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCC---chhHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 341 LLSACRIYGKIEVGNRVWRKLAEMGITD---FSTHVLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 341 l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
+...+...|++++|+..++++++..|++ +..+..++.++...|++++|..+++.+...
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5667889999999999999999987754 468889999999999999999999888754
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=6.1e-08 Score=74.76 Aligned_cols=92 Identities=8% Similarity=-0.173 Sum_probs=49.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCC
Q 047840 305 CVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGW 384 (445)
Q Consensus 305 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 384 (445)
.+...+...|++++|...|+...... +.+...|..+..++...|++++|...|+++.+.+|.++.++..++.++...|+
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~ 107 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGE 107 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCC
Confidence 34444455555555555555555444 44455555555555555555555555555555555555555555555555555
Q ss_pred hHHHHHHHHHHHh
Q 047840 385 DMEANKVRKLISE 397 (445)
Q Consensus 385 ~~~A~~~~~~m~~ 397 (445)
+++|...++...+
T Consensus 108 ~~eAi~~~~~Al~ 120 (144)
T PRK15359 108 PGLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.5e-07 Score=72.52 Aligned_cols=125 Identities=8% Similarity=-0.019 Sum_probs=103.9
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 047840 250 ELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGG 329 (445)
Q Consensus 250 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 329 (445)
.++++..+. .|+. +......+...|++++|...|+.+... -+.+...+..+..++...|++++|...|+.....
T Consensus 14 ~~~~~al~~--~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLSV--DPET--VYASGYASWQEGDYSRAVIDFSWLVMA--QPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHc--CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 455555553 3443 445677788999999999999999853 2446788889999999999999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 047840 330 LGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKE 381 (445)
Q Consensus 330 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 381 (445)
. +.+...+..+..++...|++++|+..|+++++..|+++..+...+.+...
T Consensus 88 ~-p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 88 D-ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred C-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 7 77889999999999999999999999999999999999888777766543
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.88 E-value=4.2e-07 Score=89.58 Aligned_cols=204 Identities=13% Similarity=0.135 Sum_probs=143.6
Q ss_pred CCchhhhhHHHHHHHccCChHHHHHHhhcCCCC--------ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 047840 195 EKNVILATAVVDMYSKCGHVHSALSVFEGISNK--------DAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETT 266 (445)
Q Consensus 195 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 266 (445)
|.+...|-..+......++.++|++++++.... -...|.++++.....|.-+...++|+++.+. .-.-..
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 444556666677777777777777777766542 1236777777766677777777788777664 112345
Q ss_pred HHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCC-CCCHHHHHHHHHHH
Q 047840 267 FVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLG-GGDANVWGALLSAC 345 (445)
Q Consensus 267 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~ 345 (445)
|..|...|.+.+..++|.++++.|.+.++ .....|...++.+.+.++-++|..++.+.++.-. ..........++.-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 66777778888888888888888887554 5567777778888777777788888877765421 11344555556666
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhcCCcc
Q 047840 346 RIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKK 402 (445)
Q Consensus 346 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 402 (445)
.+.|+.+.+..+|+..+...|.....|..+++.-.+.|+.+.+..+|++....++.+
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 777888888888888888888777778888888888888888888888887777655
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.83 E-value=5.3e-06 Score=67.65 Aligned_cols=162 Identities=17% Similarity=0.118 Sum_probs=112.7
Q ss_pred hhhHHHHHHHccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhh----
Q 047840 200 LATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCT---- 275 (445)
Q Consensus 200 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~---- 275 (445)
....-...|+..|++++|.+...... +..+...=+..+.+..+.+-|.+.+++|.+- -+..|.+.|..++.
T Consensus 110 ~~l~aa~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ 184 (299)
T KOG3081|consen 110 DLLLAAIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLAT 184 (299)
T ss_pred HHHHhhHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhc
Confidence 33334455777777777777777632 2223333344566777888888888888774 26677776766654
Q ss_pred cCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCh-HHH
Q 047840 276 HAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKI-EVG 354 (445)
Q Consensus 276 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a 354 (445)
..+.+.+|.-+|+++.. ..+|+..+.+....++...|++++|..++++.++.. ..++.+...++..-...|.. +-.
T Consensus 185 ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~ 261 (299)
T KOG3081|consen 185 GGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKDAEVT 261 (299)
T ss_pred cchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHH
Confidence 34568888888888875 467888888888888888888888888888888776 56677776666666566655 445
Q ss_pred HHHHHHHHHhCCCCc
Q 047840 355 NRVWRKLAEMGITDF 369 (445)
Q Consensus 355 ~~~~~~~~~~~~~~~ 369 (445)
.+.+.++....|.++
T Consensus 262 ~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 262 ERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHHHHhcCCcch
Confidence 567777777777765
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=5.1e-07 Score=81.25 Aligned_cols=250 Identities=12% Similarity=0.012 Sum_probs=183.9
Q ss_pred HHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChH
Q 047840 136 AAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVH 215 (445)
Q Consensus 136 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 215 (445)
.-+.+.|+..+|.-.|+..+..+ +-+...|..|.......++-..|+..+.+..+.. +.+..+.-+|.-.|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence 44678888999999999888764 3377888888888888888889999999998886 667888888888999999888
Q ss_pred HHHHHhhcCCCCC-hhhHHHHH---------HHHHhcCChHHHHHHHHHHH-HcCCCCCHHHHHHHHHHhhcCCcHHHHH
Q 047840 216 SALSVFEGISNKD-AGAWNAMI---------SGVAMNGDAKKSLELFDRMV-KSGTQPTETTFVAVLTTCTHAKMVRDGL 284 (445)
Q Consensus 216 ~a~~~~~~~~~~~-~~~~~~l~---------~~~~~~~~~~~a~~~~~~m~-~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 284 (445)
.|...|+.-.... ...|.... ..+..........++|-++. ..+..+|......|.-.|--.|++++|.
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 8888887542210 00000000 11122223445556665554 4454577778888888888899999999
Q ss_pred HHHHHhHHhhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 047840 285 NLFENMSAVYGVEP-QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAE 363 (445)
Q Consensus 285 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 363 (445)
..|+.+.. ++| |..+||-|..+++...+.++|+.-|++.++.. |--+.+.-.|...|...|.+++|...|-.++.
T Consensus 451 Dcf~~AL~---v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq-P~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 451 DCFEAALQ---VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ-PGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHh---cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC-CCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 99999995 355 57889999999999999999999999998654 33456777788899999999999999999887
Q ss_pred hCCC----------CchhHHHHHHHHHHcCChHHHHHH
Q 047840 364 MGIT----------DFSTHVLSYNIYKEAGWDMEANKV 391 (445)
Q Consensus 364 ~~~~----------~~~~~~~l~~~~~~~g~~~~A~~~ 391 (445)
+.+. +..+|..|=.++.-.++.+-+.++
T Consensus 527 mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 527 MQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 5443 123566666666666666644443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.82 E-value=6.9e-06 Score=72.06 Aligned_cols=125 Identities=14% Similarity=0.034 Sum_probs=80.0
Q ss_pred hHHHHHHHHHcCCChHHHHHHhccCCCC---ChhhHHHHHHHHHhcC-CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 047840 99 TWTTMVDGYGKMGDFENARELFEKMPER---NAVSWSAIMAAYSRIS-DFKEVLSLFRQMQEVGMKPNESGLVSVLTACA 174 (445)
Q Consensus 99 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 174 (445)
++..+-.++...++.++|+.+..++.+. +..+|+.....+...| ++++++..++++...+.+ +..+|+.....+.
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~ 117 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHH
Confidence 4556666777888999999999998863 3445665556666777 689999999999886533 5566665555555
Q ss_pred ccCCh--hHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCC
Q 047840 175 HLGAI--TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS 225 (445)
Q Consensus 175 ~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 225 (445)
+.|+. +.+..+++.+.+.+ +-+..+|+...-++...|+++++++.+.++.
T Consensus 118 ~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I 169 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLL 169 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 55542 45566666666554 3445555555545555555555555555443
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.2e-05 Score=75.61 Aligned_cols=239 Identities=13% Similarity=0.141 Sum_probs=122.1
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHH
Q 047840 129 VSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMY 208 (445)
Q Consensus 129 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 208 (445)
..|..+..+-.+.|...+|++-|-+. -|+..|..++..+.+.|.+++-.+++..+.+..-+|.. -..|+-+|
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~Ay 1176 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAY 1176 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHH
Confidence 45666666666666666666555331 14555666666666666666666666655555433332 33556666
Q ss_pred HccCChHHHHHHhhcCCC-----------------------CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 047840 209 SKCGHVHSALSVFEGISN-----------------------KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTET 265 (445)
Q Consensus 209 ~~~g~~~~a~~~~~~~~~-----------------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 265 (445)
++.+++.+-++++.--.. .++..|..+...+...|++..|.+.-++. .+..
T Consensus 1177 Akt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~k 1250 (1666)
T KOG0985|consen 1177 AKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA------NSTK 1250 (1666)
T ss_pred HHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchh
Confidence 666666555554321100 02334555555555555555555443322 2455
Q ss_pred HHHHHHHHhhcCCcHHHHHHHHHHhHHhhCC--CCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 047840 266 TFVAVLTTCTHAKMVRDGLNLFENMSAVYGV--EPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLS 343 (445)
Q Consensus 266 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 343 (445)
||..+-.+|...+.+.-|. + +|+ -....-..-++..|-..|-+++.+.+++..+... +.....|+-|.-
T Consensus 1251 tWK~VcfaCvd~~EFrlAQ-----i---CGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE-RAHMgmfTELai 1321 (1666)
T KOG0985|consen 1251 TWKEVCFACVDKEEFRLAQ-----I---CGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE-RAHMGMFTELAI 1321 (1666)
T ss_pred HHHHHHHHHhchhhhhHHH-----h---cCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh-HHHHHHHHHHHH
Confidence 6666666666554443221 1 122 2234445566677777777777777776654222 223344555555
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHH
Q 047840 344 ACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLIS 396 (445)
Q Consensus 344 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 396 (445)
.|.+- +.++..+.++-.-.. . -.--+++++.++.-|.|..-++.+-.
T Consensus 1322 LYsky-kp~km~EHl~LFwsR-v----NipKviRA~eqahlW~ElvfLY~~y~ 1368 (1666)
T KOG0985|consen 1322 LYSKY-KPEKMMEHLKLFWSR-V----NIPKVIRAAEQAHLWSELVFLYDKYE 1368 (1666)
T ss_pred HHHhc-CHHHHHHHHHHHHHh-c----chHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 55443 344443333322211 0 11234556666666666666555443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.1e-06 Score=69.99 Aligned_cols=157 Identities=11% Similarity=0.078 Sum_probs=108.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHh
Q 047840 233 NAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLAR 312 (445)
Q Consensus 233 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 312 (445)
..+-..+...|+-+....+....... .+-|.......+....+.|++..|...+.+... .-++|...|+.+.-+|-+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 44455566666666666666554332 122444444566667777777777777777765 456677777777777777
Q ss_pred cCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHH
Q 047840 313 AGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVR 392 (445)
Q Consensus 313 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 392 (445)
.|+++.|..-|.+..+.. +.++...+.+...+.-.|+.+.|..++.+.....+.+..+-..++.+....|++++|..+.
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 147 LGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 777777777777776654 4566667777777777777777777777777777777777777777777777777777665
Q ss_pred H
Q 047840 393 K 393 (445)
Q Consensus 393 ~ 393 (445)
.
T Consensus 226 ~ 226 (257)
T COG5010 226 V 226 (257)
T ss_pred c
Confidence 4
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=2e-06 Score=70.23 Aligned_cols=155 Identities=10% Similarity=0.160 Sum_probs=116.6
Q ss_pred HHHHccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHH
Q 047840 206 DMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLN 285 (445)
Q Consensus 206 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 285 (445)
..|...|+++.+....+.+..+. ..+...++.++++..+++..+.+ +.|...|..+...|...|++++|..
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~ 94 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALL 94 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 45667777766655443322221 01123566778888888777764 4478888899999999999999999
Q ss_pred HHHHhHHhhCCCCChhHHHHHHHHH-HhcCC--hHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 047840 286 LFENMSAVYGVEPQLEHYACVVDLL-ARAGM--VEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLA 362 (445)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 362 (445)
.|+...+. .+.+...+..+..++ ...|+ .++|.+++++..+.+ +.+..++..+...+...|++++|+..|++++
T Consensus 95 a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 95 AYRQALQL--RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999864 234577777777764 67777 599999999999887 6788899999999999999999999999999
Q ss_pred HhCCCCchhH
Q 047840 363 EMGITDFSTH 372 (445)
Q Consensus 363 ~~~~~~~~~~ 372 (445)
+..|++..-+
T Consensus 172 ~l~~~~~~r~ 181 (198)
T PRK10370 172 DLNSPRVNRT 181 (198)
T ss_pred hhCCCCccHH
Confidence 9888755433
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.4e-06 Score=79.18 Aligned_cols=214 Identities=12% Similarity=0.007 Sum_probs=158.1
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCC--CChhhHHHHHHHHHhcCC
Q 047840 167 VSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN--KDAGAWNAMISGVAMNGD 244 (445)
Q Consensus 167 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~ 244 (445)
..+...+.+.|-...|..++++.. .+...+.+|+..|+..+|..+..+..+ +|+..|..+.+......-
T Consensus 402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~ 472 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSL 472 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHH
Confidence 345566777777888888877654 345577888888888888887765443 577777777777777777
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 047840 245 AKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIE 324 (445)
Q Consensus 245 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 324 (445)
+++|.++.+....+ .-..+.....+.++++++.+.|+.-.+.. +....+|-.+.-+..+.+++..|.+.|.
T Consensus 473 yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n--plq~~~wf~~G~~ALqlek~q~av~aF~ 543 (777)
T KOG1128|consen 473 YEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN--PLQLGTWFGLGCAALQLEKEQAAVKAFH 543 (777)
T ss_pred HHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC--ccchhHHHhccHHHHHHhhhHHHHHHHH
Confidence 78888877754322 11112222334678888888888776532 3345677777777788899999999998
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 047840 325 EKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETG 399 (445)
Q Consensus 325 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 399 (445)
...... +.+...||.+-.+|.+.++-.+|...++++.+..-.+..+|..........|.+++|.+.+.++.+..
T Consensus 544 rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 544 RCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 887654 45567899999999999999999999999999887788888888888899999999999888887543
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=4.6e-06 Score=77.36 Aligned_cols=191 Identities=15% Similarity=0.139 Sum_probs=160.8
Q ss_pred CCCchhhhhHHHHHHHccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 047840 194 LEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTT 273 (445)
Q Consensus 194 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 273 (445)
.+|-...-..+...+...|-...|..+|+++ ..|.-.+.+|+..|+..+|..+..+..+ -+||...|..+.+.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 4555566677888899999999999999875 4677888999999999999999988877 37899999999888
Q ss_pred hhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHH
Q 047840 274 CTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEV 353 (445)
Q Consensus 274 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 353 (445)
.....-+++|.++.+....+ .-..+.....+.++++++.+.|+.-.+.+ +--..+|-.+..+..+.++++.
T Consensus 467 ~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHH
Confidence 87777788888888776642 11222233345799999999999877666 5677889999999999999999
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 047840 354 GNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGM 400 (445)
Q Consensus 354 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 400 (445)
|.+.|..-...+|++...|+.+..+|.+.|+-.+|...+++..+.+.
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~ 584 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY 584 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC
Confidence 99999999999999999999999999999999999999999988874
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=4.9e-05 Score=78.38 Aligned_cols=324 Identities=11% Similarity=0.009 Sum_probs=198.7
Q ss_pred HHHhcCCHHHHHHHhccCCCCChh--hHHHHHHHHHcCCChHHHHHHhccCCC----CChhhHHHHHHHHHhcCCHhHHH
Q 047840 75 FYSLVHKMGTARALFDKSPDRDVV--TWTTMVDGYGKMGDFENARELFEKMPE----RNAVSWSAIMAAYSRISDFKEVL 148 (445)
Q Consensus 75 ~~~~~g~~~~a~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~ 148 (445)
.+...|++.+|..........+.. ............|+++.+..+++.+.. .+..........+...|+++++.
T Consensus 350 ~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~ 429 (903)
T PRK04841 350 AWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVN 429 (903)
T ss_pred HHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHH
Confidence 344445555555444443322111 111223345567888888888887742 23333344555667889999999
Q ss_pred HHHHHHHHcC--C----CCC--HHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCch----hhhhHHHHHHHccCChHH
Q 047840 149 SLFRQMQEVG--M----KPN--ESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNV----ILATAVVDMYSKCGHVHS 216 (445)
Q Consensus 149 ~~~~~~~~~~--~----~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~ 216 (445)
..+......- . .|. ......+...+...|++++|...+++....-...+. ...+.+...+...|+++.
T Consensus 430 ~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~ 509 (903)
T PRK04841 430 TLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELAR 509 (903)
T ss_pred HHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHH
Confidence 9998775421 1 111 112223334566889999999999988763211121 234556667788999999
Q ss_pred HHHHhhcCCC-------CC--hhhHHHHHHHHHhcCChHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHhhcCCcH
Q 047840 217 ALSVFEGISN-------KD--AGAWNAMISGVAMNGDAKKSLELFDRMVKS----GTQ--P-TETTFVAVLTTCTHAKMV 280 (445)
Q Consensus 217 a~~~~~~~~~-------~~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~--p-~~~~~~~l~~~~~~~~~~ 280 (445)
|...+.+... +. ..++..+...+...|+++.|...+++.... +.. | ....+..+...+...|++
T Consensus 510 A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~ 589 (903)
T PRK04841 510 ALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARL 589 (903)
T ss_pred HHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCH
Confidence 9999877642 11 224455667788999999999998876542 221 1 223344445556677999
Q ss_pred HHHHHHHHHhHHhhC-CCC--ChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCC-CCCHHHH-----HHHHHHHHHcCCh
Q 047840 281 RDGLNLFENMSAVYG-VEP--QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLG-GGDANVW-----GALLSACRIYGKI 351 (445)
Q Consensus 281 ~~a~~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~-----~~l~~~~~~~g~~ 351 (445)
++|...+.+...... ..+ ....+..+...+...|++++|...++......- ......+ ...+..+...|+.
T Consensus 590 ~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 669 (903)
T PRK04841 590 DEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDK 669 (903)
T ss_pred HHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCH
Confidence 999999888764211 112 133344456677889999999999888743210 1111111 1122344567899
Q ss_pred HHHHHHHHHHHHhCCCCchh----HHHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 352 EVGNRVWRKLAEMGITDFST----HVLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 352 ~~a~~~~~~~~~~~~~~~~~----~~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
+.|.+.+.......+..... ...++.++...|++++|...+++....
T Consensus 670 ~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 670 EAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNEN 720 (903)
T ss_pred HHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999887765433222211 456788899999999999998887653
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.4e-05 Score=72.90 Aligned_cols=258 Identities=12% Similarity=0.124 Sum_probs=141.9
Q ss_pred HcCCChHHHHHHhccCCCCChh--hHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHH
Q 047840 108 GKMGDFENARELFEKMPERNAV--SWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWV 185 (445)
Q Consensus 108 ~~~g~~~~A~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 185 (445)
.....+.+|+.+++.+..+++. -|..+...|...|+++.|.++|.+.- .++-.|..|.+.|++..|.++
T Consensus 743 i~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kl 813 (1636)
T KOG3616|consen 743 IGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKL 813 (1636)
T ss_pred hhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHH
Confidence 3445555666666655544332 25555666666666666666664321 233445566666666666665
Q ss_pred HHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 047840 186 HSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTET 265 (445)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 265 (445)
-.+.. |.......|-+-..-+-+.|++.+|.++|-.+..|+. .|..|-+.|..+..+++..+-.. ..-..
T Consensus 814 a~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~h~---d~l~d 883 (1636)
T KOG3616|consen 814 AEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKHHG---DHLHD 883 (1636)
T ss_pred HHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHhCh---hhhhH
Confidence 54432 3233444555555555666666666666666555543 35566666666666666554321 11234
Q ss_pred HHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHH--------
Q 047840 266 TFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANV-------- 337 (445)
Q Consensus 266 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-------- 337 (445)
|-..+..-+-..|++..|...|-+.. -|.+-++.|...+.+++|.++-+.- | ..|..-
T Consensus 884 t~~~f~~e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriakte---g-g~n~~k~v~flwak 949 (1636)
T KOG3616|consen 884 THKHFAKELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAKTE---G-GANAEKHVAFLWAK 949 (1636)
T ss_pred HHHHHHHHHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhcc---c-cccHHHHHHHHHHH
Confidence 55556666777788888887775554 2344555666666666666654432 2 111111
Q ss_pred ----------------HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 047840 338 ----------------WGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGM 400 (445)
Q Consensus 338 ----------------~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 400 (445)
...-+...+..+-++-|.++-+-..+.. .+.....++..+...|++++|.+-+-+..+.+.
T Consensus 950 siggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k--~~~vhlk~a~~ledegk~edaskhyveaiklnt 1026 (1636)
T KOG3616|consen 950 SIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK--MGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNT 1026 (1636)
T ss_pred hhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc--CccchhHHhhhhhhccchhhhhHhhHHHhhccc
Confidence 1111222233444445544444333322 234566777788889999999887776666544
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.1e-06 Score=74.69 Aligned_cols=184 Identities=11% Similarity=0.037 Sum_probs=131.0
Q ss_pred CCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCch---hhhhHHHHHHHccCChHHHHHHhhcCCCC---Chh---h
Q 047840 161 PNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNV---ILATAVVDMYSKCGHVHSALSVFEGISNK---DAG---A 231 (445)
Q Consensus 161 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~---~ 231 (445)
.....+..+...+...|+++.|...++++.+.. +.+. ..+..+..++.+.|+++.|...++++.+. +.. +
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 356678888889999999999999999998764 2222 46677889999999999999999988642 222 4
Q ss_pred HHHHHHHHHhc--------CChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhH
Q 047840 232 WNAMISGVAMN--------GDAKKSLELFDRMVKSGTQPTET-TFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEH 302 (445)
Q Consensus 232 ~~~l~~~~~~~--------~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 302 (445)
+..+..++... |++++|.+.++++... .|+.. ....+... ..+... . ...
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~--------------~~~~~~----~-~~~ 168 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM--------------DYLRNR----L-AGK 168 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH--------------HHHHHH----H-HHH
Confidence 55555666554 7789999999999876 34432 22211111 111100 0 011
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhcCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 047840 303 YACVVDLLARAGMVEEAEKFIEEKMGGL--GGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366 (445)
Q Consensus 303 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 366 (445)
...+...|.+.|++.+|...+++..+.. -+.....+..++.++...|++++|...++.+....|
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 1245677889999999999999987653 123457888999999999999999999888877655
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=3e-06 Score=81.94 Aligned_cols=134 Identities=10% Similarity=0.007 Sum_probs=71.3
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHH
Q 047840 229 AGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPT-ETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVV 307 (445)
Q Consensus 229 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 307 (445)
+..+..|.....+.|++++|..+++...+. .|+ ......+...+.+.+++++|....++.... -+-+......+.
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~a 161 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLEA 161 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHHH
Confidence 445555555555566666666666655553 333 233444455555556666666666555532 122233444455
Q ss_pred HHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 047840 308 DLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT 367 (445)
Q Consensus 308 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 367 (445)
.++...|++++|..+|+++...+ +.+..++..+..++...|+.++|...|+++++...+
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~ 220 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGD 220 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc
Confidence 55555666666666666655533 333555555555555666666666666666554433
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.71 E-value=8.2e-06 Score=80.93 Aligned_cols=232 Identities=12% Similarity=0.149 Sum_probs=174.3
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHHHHHHHc-CCC---CchhhhhHHHHHHHccCChHHHHHHhhcCCCC-C-hhhHHHH
Q 047840 162 NESGLVSVLTACAHLGAITQGLWVHSYAKRY-HLE---KNVILATAVVDMYSKCGHVHSALSVFEGISNK-D-AGAWNAM 235 (445)
Q Consensus 162 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~-~~~~~~l 235 (445)
+...|...+......++.+.|.++.++++.. ++. --..+|.++++....-|.-+...++|+++.+- | ...|..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L 1536 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKL 1536 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHH
Confidence 4566777888888899999999999888753 111 12356777777777778888888899888763 3 3478889
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCC
Q 047840 236 ISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGM 315 (445)
Q Consensus 236 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 315 (445)
...|.+.+.+++|.++|+.|.+. +.-....|...+..+.+.++-+.|..++.++.+...-.-......-.+..-.+.|+
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCC
Confidence 99999999999999999999886 44577889999999999999999999999998641111134455566666778999
Q ss_pred hHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--CchhHHHHHHHHHH-cCChHHHHHHH
Q 047840 316 VEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT--DFSTHVLSYNIYKE-AGWDMEANKVR 392 (445)
Q Consensus 316 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~-~g~~~~A~~~~ 392 (445)
.++++.+|+..+... |.-...|+.+++.-.++|+.+.+..+|++++.+... ....++-.---|.+ .|+-+.++.+=
T Consensus 1616 aeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VK 1694 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVK 1694 (1710)
T ss_pred chhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHH
Confidence 999999999988765 667788999999999999999999999999986543 44444433333444 46655444443
Q ss_pred HHH
Q 047840 393 KLI 395 (445)
Q Consensus 393 ~~m 395 (445)
.+.
T Consensus 1695 arA 1697 (1710)
T KOG1070|consen 1695 ARA 1697 (1710)
T ss_pred HHH
Confidence 333
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.70 E-value=4.7e-05 Score=73.39 Aligned_cols=155 Identities=14% Similarity=0.185 Sum_probs=114.4
Q ss_pred CChHHHHHHhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhH
Q 047840 212 GHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMS 291 (445)
Q Consensus 212 g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (445)
+.+++|.++-++.. .+..|+.+..+-.+.|...+|++-|-+. -|+..|..++....+.|.+++-..++...+
T Consensus 1089 ~~ldRA~efAe~~n--~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaR 1160 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCN--EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMAR 1160 (1666)
T ss_pred hhHHHHHHHHHhhC--ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 34444444444433 3457899999999999999999877543 367789999999999999999999998887
Q ss_pred HhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchh
Q 047840 292 AVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFST 371 (445)
Q Consensus 292 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 371 (445)
+. .-.|... +.|+-+|++.+++.+.++++. .||......+.+-|...|.++.|.-+|..+ +-
T Consensus 1161 kk-~~E~~id--~eLi~AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v--------SN 1222 (1666)
T KOG0985|consen 1161 KK-VREPYID--SELIFAYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNV--------SN 1222 (1666)
T ss_pred Hh-hcCccch--HHHHHHHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHh--------hh
Confidence 75 5555554 578889999999888777653 488888888888898888888887777654 23
Q ss_pred HHHHHHHHHHcCChHHHHHHH
Q 047840 372 HVLSYNIYKEAGWDMEANKVR 392 (445)
Q Consensus 372 ~~~l~~~~~~~g~~~~A~~~~ 392 (445)
|..|+..+...|++..|...-
T Consensus 1223 ~a~La~TLV~LgeyQ~AVD~a 1243 (1666)
T KOG0985|consen 1223 FAKLASTLVYLGEYQGAVDAA 1243 (1666)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 555666666666666555433
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.68 E-value=0.00023 Score=64.26 Aligned_cols=132 Identities=12% Similarity=0.120 Sum_probs=58.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHH
Q 047840 232 WNAMISGVAMNGDAKKSLELFDRMVKSGTQP-TETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLL 310 (445)
Q Consensus 232 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 310 (445)
|-..+..-.+......|..+|.+..+.+..+ +....++++..++. ++.+.|.++|+.-.+.+|- ++......++-+
T Consensus 369 ~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~d--~p~yv~~YldfL 445 (656)
T KOG1914|consen 369 YCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKFGD--SPEYVLKYLDFL 445 (656)
T ss_pred hhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhcCC--ChHHHHHHHHHH
Confidence 3344444444444455555555554444433 33444444444332 4444555555444433211 112223344444
Q ss_pred HhcCChHHHHHHHHHHhcCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 047840 311 ARAGMVEEAEKFIEEKMGGLGGGD--ANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366 (445)
Q Consensus 311 ~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 366 (445)
...++-..|..+|++.+..++.|+ ..+|..++.--...|+...+.++-++....-|
T Consensus 446 ~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 446 SHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 444554555555555544433332 23455555544455555555555555444443
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.68 E-value=7.1e-07 Score=68.48 Aligned_cols=97 Identities=18% Similarity=0.113 Sum_probs=70.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 047840 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYK 380 (445)
Q Consensus 301 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 380 (445)
.....+...+...|++++|.+.++.+...+ +.+...|..+...+...|++++|...++++++.+|+++..+..++.+|.
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 344555666777777777777777776655 5566777777777777777777777777777777777777777777777
Q ss_pred HcCChHHHHHHHHHHHhc
Q 047840 381 EAGWDMEANKVRKLISET 398 (445)
Q Consensus 381 ~~g~~~~A~~~~~~m~~~ 398 (445)
..|++++|...++...+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 97 ALGEPESALKALDLAIEI 114 (135)
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 777777777777766654
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.67 E-value=0.00027 Score=63.80 Aligned_cols=120 Identities=11% Similarity=0.059 Sum_probs=93.6
Q ss_pred HHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHHcCChHHHHHHH
Q 047840 280 VRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGG-DANVWGALLSACRIYGKIEVGNRVW 358 (445)
Q Consensus 280 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~ 358 (445)
.+....+++++.......|+. +|..+++.-.+..-+..|+.+|.++.+.+..+ ++.+.++++.-++ .++.+-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tL-v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTL-VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCce-ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHH
Confidence 555666777777654555553 56677787788888899999999988776666 6777888887665 47888999999
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhcCCc
Q 047840 359 RKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMK 401 (445)
Q Consensus 359 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 401 (445)
+--+...++++..-...++.+...++-..|..+|++....++.
T Consensus 425 eLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~ 467 (656)
T KOG1914|consen 425 ELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLS 467 (656)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCC
Confidence 9988888888777777888888899999999999998877554
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.3e-05 Score=76.89 Aligned_cols=236 Identities=9% Similarity=0.035 Sum_probs=152.7
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHhccCCC--CC-hhhHHHHHHHHHcCCChHHHHHHhccCCCCChhhHHHHHHHHHhc
Q 047840 65 DPFVVSSLLEFYSLVHKMGTARALFDKSPD--RD-VVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRI 141 (445)
Q Consensus 65 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~ 141 (445)
+...+..|+..+...+++++|.++.+...+ |+ ...|-.+...+.+.++.+.+..+ .++......
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~~ 96 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-------------NLIDSFSQN 96 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhcccc
Confidence 345667777777777777777777765443 22 22333333355555554333222 344445555
Q ss_pred CCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHh
Q 047840 142 SDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVF 221 (445)
Q Consensus 142 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 221 (445)
.++.-+..++..+... .-+...+..+..+|.+.|+.+++..+++++++.. +.|+.+.|.+...|... ++++|..++
T Consensus 97 ~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~ 172 (906)
T PRK14720 97 LKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYL 172 (906)
T ss_pred cchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHH
Confidence 5564444444555542 2345577778888888888888888888888887 66788888888888888 888888877
Q ss_pred hcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChh
Q 047840 222 EGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLE 301 (445)
Q Consensus 222 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 301 (445)
.+. +..|...+++..+.++|.++.... |+.. +.-..+.+.+....+..--..
T Consensus 173 ~KA-----------V~~~i~~kq~~~~~e~W~k~~~~~--~~d~---------------d~f~~i~~ki~~~~~~~~~~~ 224 (906)
T PRK14720 173 KKA-----------IYRFIKKKQYVGIEEIWSKLVHYN--SDDF---------------DFFLRIERKVLGHREFTRLVG 224 (906)
T ss_pred HHH-----------HHHHHhhhcchHHHHHHHHHHhcC--cccc---------------hHHHHHHHHHHhhhccchhHH
Confidence 654 344677778888888888887752 2222 222233333333223333455
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 047840 302 HYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACR 346 (445)
Q Consensus 302 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 346 (445)
++-.+...|...++++++..+++.+++.. +.|.....-++..|.
T Consensus 225 ~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 225 LLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 66677777888888889999988888776 567777777777775
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=6e-05 Score=71.20 Aligned_cols=160 Identities=16% Similarity=0.185 Sum_probs=102.0
Q ss_pred hhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHhccCCC-CChhhHHHHHHHHHcCCChHHHHH
Q 047840 40 CVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPD-RDVVTWTTMVDGYGKMGDFENARE 118 (445)
Q Consensus 40 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~ 118 (445)
....|-.+ .|..+|.+..+. ..|=+.|-..|.+++|.++-+.-.. .=..+|.....-+-..++.+.|++
T Consensus 810 AieLgMlE-eA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~Ale 879 (1416)
T KOG3617|consen 810 AIELGMLE-EALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALE 879 (1416)
T ss_pred HHHHhhHH-HHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHH
Confidence 35677788 899998887773 3455677788999999988765433 123456666666677888889988
Q ss_pred HhccCCCC-----------------------ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 047840 119 LFEKMPER-----------------------NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH 175 (445)
Q Consensus 119 ~~~~~~~~-----------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 175 (445)
.|++...+ |...|.-....+-..|+.|.|+.+|....+ |-.+++..|-
T Consensus 880 yyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~ 950 (1416)
T KOG3617|consen 880 YYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCI 950 (1416)
T ss_pred HHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEee
Confidence 88876432 333344444445555666666666655432 3445555566
Q ss_pred cCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcC
Q 047840 176 LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGI 224 (445)
Q Consensus 176 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 224 (445)
.|+.++|-++-++- .|......|.+.|-..|++.+|..+|.+.
T Consensus 951 qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 951 QGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred ccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 66666666654432 24455556667777777777777766554
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.8e-05 Score=64.60 Aligned_cols=245 Identities=10% Similarity=0.033 Sum_probs=157.7
Q ss_pred HHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChH
Q 047840 136 AAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVH 215 (445)
Q Consensus 136 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 215 (445)
+-+.-.|++..++..-...... +-+...-.-+.++|...|....... ++.... .|.......+......-++.+
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~~ 89 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNKK 89 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchhH
Confidence 4455567777776655544332 1344444445566666665443221 111111 222333333333333333333
Q ss_pred HHH-HHhhcCCCC----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHh
Q 047840 216 SAL-SVFEGISNK----DAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENM 290 (445)
Q Consensus 216 ~a~-~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 290 (445)
.-. ++.+.+..+ +......-...|+..+++++|++..... - +......=+..+.+..+.+-|.+.++.|
T Consensus 90 ~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~----~--~lE~~Al~VqI~lk~~r~d~A~~~lk~m 163 (299)
T KOG3081|consen 90 SILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG----E--NLEAAALNVQILLKMHRFDLAEKELKKM 163 (299)
T ss_pred HHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc----c--hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 222333322 2222333345688999999999988762 1 2222222334456778899999999999
Q ss_pred HHhhCCCCChhHHHHHHHHHHh----cCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 047840 291 SAVYGVEPQLEHYACVVDLLAR----AGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366 (445)
Q Consensus 291 ~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 366 (445)
.+- .+..+.+.|..++.+ .+.+.+|.-+|++|-++- +|+..+.+....++...|++++|..+++.++..++
T Consensus 164 q~i----ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~-~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 164 QQI----DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKT-PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred Hcc----chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhccc-CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 852 455666767776654 567899999999998754 79999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHcCChHHHHH-HHHHHHh
Q 047840 367 TDFSTHVLSYNIYKEAGWDMEANK-VRKLISE 397 (445)
Q Consensus 367 ~~~~~~~~l~~~~~~~g~~~~A~~-~~~~m~~ 397 (445)
.++.+...++.+-...|+..++.+ .+..++.
T Consensus 239 ~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 239 KDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 999999999999899998877665 6666554
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.65 E-value=0.00051 Score=65.81 Aligned_cols=215 Identities=13% Similarity=0.166 Sum_probs=131.4
Q ss_pred hhhcCCchHHHHHHHHHHhcCCCCCcccHHHHHHHh--hhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCH
Q 047840 5 YMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKAC--VILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKM 82 (445)
Q Consensus 5 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (445)
....++++.|+.-..++.+.- ||.. |..++.++ .+.|+.+ .|..+++.....+.. |..|...+-.+|...|+.
T Consensus 19 ~ld~~qfkkal~~~~kllkk~--Pn~~-~a~vLkaLsl~r~gk~~-ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~ 93 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKH--PNAL-YAKVLKALSLFRLGKGD-EALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKL 93 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHC--CCcH-HHHHHHHHHHHHhcCch-hHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhh
Confidence 455788999999999988754 6655 44555554 6888998 888888776665544 777888899999999999
Q ss_pred HHHHHHhccCCC--CChhhHHHHHHHHHcCCCh----HHHHHHhccCCCCChhhHHHHHHHHHhc-CC---------HhH
Q 047840 83 GTARALFDKSPD--RDVVTWTTMVDGYGKMGDF----ENARELFEKMPERNAVSWSAIMAAYSRI-SD---------FKE 146 (445)
Q Consensus 83 ~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~----~~A~~~~~~~~~~~~~~~~~l~~~~~~~-~~---------~~~ 146 (445)
++|..+|++... |+......+..+|++.+++ ..|+++++..++.--.-|+ +++...+. .. ..-
T Consensus 94 d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWs-V~Slilqs~~~~~~~~~~i~l~L 172 (932)
T KOG2053|consen 94 DEAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWS-VISLILQSIFSENELLDPILLAL 172 (932)
T ss_pred hHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHH-HHHHHHHhccCCcccccchhHHH
Confidence 999999999876 5555555666777777765 4467777766543333333 23322221 11 123
Q ss_pred HHHHHHHHHHcC-CCCCHHHHHHHHHHHHccCChhHHHHHH-HHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcC
Q 047840 147 VLSLFRQMQEVG-MKPNESGLVSVLTACAHLGAITQGLWVH-SYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGI 224 (445)
Q Consensus 147 a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 224 (445)
|.+.++.+.+.+ ---+..-...-...+...|++++|..++ ....+.-...+...-+.-+..+...++|.+..++-.++
T Consensus 173 A~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 173 AEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 444555554433 1112222333344455667777777777 33333323334444445556666666666655555444
Q ss_pred C
Q 047840 225 S 225 (445)
Q Consensus 225 ~ 225 (445)
.
T Consensus 253 l 253 (932)
T KOG2053|consen 253 L 253 (932)
T ss_pred H
Confidence 3
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=4.7e-05 Score=67.79 Aligned_cols=114 Identities=19% Similarity=0.065 Sum_probs=53.9
Q ss_pred cCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHH
Q 047840 276 HAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGN 355 (445)
Q Consensus 276 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 355 (445)
..|++++|+..++.+... .+-|+..+....+.+.+.++.++|.+.++++.... +.....+..+..++.+.|+..+|+
T Consensus 318 ~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~~g~~~eai 394 (484)
T COG4783 318 LAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLKGGKPQEAI 394 (484)
T ss_pred HhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHhcCChHHHH
Confidence 334555555555554432 12222233333445555555555555555554433 122344444555555555555555
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHH
Q 047840 356 RVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVR 392 (445)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 392 (445)
.++++.....|+++..|..|+.+|...|+..+|....
T Consensus 395 ~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~ 431 (484)
T COG4783 395 RILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR 431 (484)
T ss_pred HHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH
Confidence 5555555555555555555555555554444444333
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.64 E-value=5.9e-06 Score=67.42 Aligned_cols=137 Identities=15% Similarity=0.068 Sum_probs=116.0
Q ss_pred CCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHH
Q 047840 261 QPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGA 340 (445)
Q Consensus 261 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 340 (445)
.|.......+-..+...|+-+....+...... ..+.+......++....+.|++.+|...+++..... ++|..+|+.
T Consensus 63 ~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~ 139 (257)
T COG5010 63 NPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNL 139 (257)
T ss_pred CcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhH
Confidence 34333335556667777888888887777653 334455666778999999999999999999998877 899999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 047840 341 LLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGM 400 (445)
Q Consensus 341 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 400 (445)
+..+|.+.|+++.|..-|.++.++.|.++.+.+.++..|.-.|+.+.|..++......+.
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ 199 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA 199 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999999999999999998876554
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.8e-05 Score=70.27 Aligned_cols=144 Identities=16% Similarity=0.148 Sum_probs=116.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH-HHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHH
Q 047840 233 NAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTF-VAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ-LEHYACVVDLL 310 (445)
Q Consensus 233 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~ 310 (445)
.-....+...|.+++|+..++.+... .|+...| ......+...++.++|.+.++.+... .|+ ....-.+..+|
T Consensus 310 YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~a~al 384 (484)
T COG4783 310 YGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQLNLAQAL 384 (484)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHHHHHHHH
Confidence 33344556788999999999998876 4555444 45556689999999999999999954 676 45556788999
Q ss_pred HhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHH
Q 047840 311 ARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANK 390 (445)
Q Consensus 311 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 390 (445)
.+.|++.+|..+++...... +.|+..|..|.++|...|+..++... .++.|...|+++.|..
T Consensus 385 l~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~A~~ 446 (484)
T COG4783 385 LKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQAII 446 (484)
T ss_pred HhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHHHHH
Confidence 99999999999999988776 88999999999999999999887544 4557888899999999
Q ss_pred HHHHHHhcC
Q 047840 391 VRKLISETG 399 (445)
Q Consensus 391 ~~~~m~~~~ 399 (445)
.+....+..
T Consensus 447 ~l~~A~~~~ 455 (484)
T COG4783 447 FLMRASQQV 455 (484)
T ss_pred HHHHHHHhc
Confidence 888887654
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.64 E-value=5.6e-08 Score=53.44 Aligned_cols=32 Identities=34% Similarity=0.608 Sum_probs=22.3
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHHH
Q 047840 295 GVEPQLEHYACVVDLLARAGMVEEAEKFIEEK 326 (445)
Q Consensus 295 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 326 (445)
|+.||..+|++||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56677777777777777777777777777665
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.64 E-value=4.7e-08 Score=53.72 Aligned_cols=34 Identities=24% Similarity=0.493 Sum_probs=29.4
Q ss_pred cCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhH
Q 047840 258 SGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMS 291 (445)
Q Consensus 258 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (445)
+|+.||..||+.++.+|++.|++++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3788999999999999999999999999998873
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.6e-05 Score=77.88 Aligned_cols=231 Identities=11% Similarity=0.081 Sum_probs=152.2
Q ss_pred ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHH
Q 047840 127 NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNE-SGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVV 205 (445)
Q Consensus 127 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 205 (445)
+...+..|+..+...+++++|.++.+...+. .|+. ..|..+...+.+.++.+.+..+ . ++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~---------------~l 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--N---------------LI 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--h---------------hh
Confidence 5667888999999999999999999877664 4544 3333444455666665554444 2 22
Q ss_pred HHHHccCChHHHHHHhhcCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHH
Q 047840 206 DMYSKCGHVHSALSVFEGISN--KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDG 283 (445)
Q Consensus 206 ~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 283 (445)
.......++.-..-+...+.. .+..++..+..+|-+.|+.++|..+|+++.+.. +-|....|.+...|+.. ++++|
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred hhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHH
Confidence 333333333223333333332 233467788899999999999999999999876 34778888888888888 99999
Q ss_pred HHHHHHhHHhhCCCCChhHHHHHHH---HHH--hcCChHHHHHHHHHHhcC-CCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 047840 284 LNLFENMSAVYGVEPQLEHYACVVD---LLA--RAGMVEEAEKFIEEKMGG-LGGGDANVWGALLSACRIYGKIEVGNRV 357 (445)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~l~~---~~~--~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 357 (445)
.+++.++...+ -+..-|+.+.. -++ ...+++.-..+.+.+... +...-+.++..+-..|....+++++..+
T Consensus 169 ~~m~~KAV~~~---i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~i 245 (906)
T PRK14720 169 ITYLKKAIYRF---IKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYI 245 (906)
T ss_pred HHHHHHHHHHH---HhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHH
Confidence 99988887641 11111221111 111 223444444445444433 3334455566666788888999999999
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHH
Q 047840 358 WRKLAEMGITDFSTHVLSYNIYKE 381 (445)
Q Consensus 358 ~~~~~~~~~~~~~~~~~l~~~~~~ 381 (445)
++.+++.+|.+..+...++.+|..
T Consensus 246 LK~iL~~~~~n~~a~~~l~~~y~~ 269 (906)
T PRK14720 246 LKKILEHDNKNNKAREELIRFYKE 269 (906)
T ss_pred HHHHHhcCCcchhhHHHHHHHHHH
Confidence 999999999998888899988873
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.1e-06 Score=76.79 Aligned_cols=125 Identities=14% Similarity=0.095 Sum_probs=105.8
Q ss_pred HHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 047840 266 TFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSAC 345 (445)
Q Consensus 266 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 345 (445)
....++..+...++++.|..+++++.+. .|+ ....++..+...++-.+|.+++.+.++.. +.+...+......|
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 3445666677788999999999999865 355 44457788888888899999999988665 56778888888889
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHH
Q 047840 346 RIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLIS 396 (445)
Q Consensus 346 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 396 (445)
.+.++++.|+.+.+++.+..|.+..+|..|+.+|.+.|++++|+..++.+.
T Consensus 245 l~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999999999888775
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.4e-05 Score=75.27 Aligned_cols=373 Identities=10% Similarity=0.044 Sum_probs=197.7
Q ss_pred chHHHHHHHHHHhcCCCCC-cccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHh
Q 047840 11 PKLSVFCYLDMLDMGFEPN-NYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALF 89 (445)
Q Consensus 11 ~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 89 (445)
...|+..|-+..+.. |+ ...|..+...|+...+.. .|.+.|+...... ..+...+......|++..+++.|..+.
T Consensus 474 ~~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~-RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 474 SALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMK-RAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred HHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHH
Confidence 444555554444422 32 235666666666666666 6777777665533 224445666777777777777777764
Q ss_pred ccCCCC-----ChhhHHHHHHHHHcCCChHHHHHHhccCCC--C-ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC
Q 047840 90 DKSPDR-----DVVTWTTMVDGYGKMGDFENARELFEKMPE--R-NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKP 161 (445)
Q Consensus 90 ~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 161 (445)
-..-+. -...|....-.|.+.++...|..-|+.... | |...|..++.+|...|++..|+++|.+... ++|
T Consensus 550 l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP 627 (1238)
T KOG1127|consen 550 LRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRP 627 (1238)
T ss_pred HHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCc
Confidence 322221 122344445556667777777777776654 2 555677777788888888888888877665 344
Q ss_pred CHHHHHH--HHHHHHccCChhHHHHHHHHHHHcC------CCCchhhhhHHHHHHHccCChHHHHHHhhcCCC-------
Q 047840 162 NESGLVS--VLTACAHLGAITQGLWVHSYAKRYH------LEKNVILATAVVDMYSKCGHVHSALSVFEGISN------- 226 (445)
Q Consensus 162 ~~~~~~~--l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------- 226 (445)
+. +|.. ....-+..|.+.++...+....... ...-..++-.+...+.-.|-..+|..++++-.+
T Consensus 628 ~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~ 706 (1238)
T KOG1127|consen 628 LS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLI 706 (1238)
T ss_pred Hh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 32 2222 1222356677777776666654321 011111222222222222322333333322111
Q ss_pred ----CChhhHHHHHHHHH---hcC--Ch-HHHHHH-HHHHHHcCCCC--------------------CHHHHHHHHHHhh
Q 047840 227 ----KDAGAWNAMISGVA---MNG--DA-KKSLEL-FDRMVKSGTQP--------------------TETTFVAVLTTCT 275 (445)
Q Consensus 227 ----~~~~~~~~l~~~~~---~~~--~~-~~a~~~-~~~m~~~~~~p--------------------~~~~~~~l~~~~~ 275 (445)
.+...|-.+-.++. ... -+ .....+ +.+....+.-| +..+|..+...|.
T Consensus 707 h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinyl 786 (1238)
T KOG1127|consen 707 HSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYL 786 (1238)
T ss_pred HhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHH
Confidence 11112221111110 000 00 000000 01111111111 1122222222211
Q ss_pred c--------CCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 047840 276 H--------AKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRI 347 (445)
Q Consensus 276 ~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 347 (445)
+ ..+...|...+....+. ...+..+|+.|.-. ...|++.-|..-|-.-.... +....+|..+...+..
T Consensus 787 r~f~~l~et~~~~~~Ai~c~KkaV~L--~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~ 862 (1238)
T KOG1127|consen 787 RYFLLLGETMKDACTAIRCCKKAVSL--CANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLE 862 (1238)
T ss_pred HHHHHcCCcchhHHHHHHHHHHHHHH--hhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEe
Confidence 1 12233566666666542 12344455554433 55566666666665544434 5566778888888888
Q ss_pred cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHH
Q 047840 348 YGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKL 394 (445)
Q Consensus 348 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 394 (445)
..+++.|...|.....++|.+...|...+.+-...|+.-++..+|..
T Consensus 863 n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 863 NQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred cccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 89999999999999999999988998888888889998888888877
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.9e-06 Score=65.37 Aligned_cols=96 Identities=11% Similarity=-0.022 Sum_probs=85.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 047840 302 HYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKE 381 (445)
Q Consensus 302 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 381 (445)
..-.+...+...|++++|.++|+-+.... +-+..-|..|.-++...|++++|+..|..+..++|+++.++..++.++..
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 33445556778999999999999987766 66778899999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHhc
Q 047840 382 AGWDMEANKVRKLISET 398 (445)
Q Consensus 382 ~g~~~~A~~~~~~m~~~ 398 (445)
.|+.+.|.+.|+.....
T Consensus 116 lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 116 CDNVCYAIKALKAVVRI 132 (157)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 99999999999987753
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.6e-05 Score=62.44 Aligned_cols=134 Identities=10% Similarity=0.146 Sum_probs=99.6
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHH
Q 047840 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEE 318 (445)
Q Consensus 239 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 318 (445)
+-..|++++|+++++.+.+.+ +-|..++..-+...-..|+.-+|++-+....+ .+..|...|.-+.+.|...|++++
T Consensus 96 lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~k 172 (289)
T KOG3060|consen 96 LEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEK 172 (289)
T ss_pred HHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHH
Confidence 345678888888888888764 33556666666666667777788888888876 557788899999999999999999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHhCCCCchhHHHHH
Q 047840 319 AEKFIEEKMGGLGGGDANVWGALLSACRIYG---KIEVGNRVWRKLAEMGITDFSTHVLSY 376 (445)
Q Consensus 319 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~l~ 376 (445)
|.-.+++++-.. |.++..+..+...+.-.| +.+-+.+.|.+.++..|.+...+..+.
T Consensus 173 A~fClEE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~ 232 (289)
T KOG3060|consen 173 AAFCLEELLLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIY 232 (289)
T ss_pred HHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHH
Confidence 999998887655 566666777776655444 567888899999988886655555443
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.55 E-value=4.8e-06 Score=63.82 Aligned_cols=116 Identities=10% Similarity=-0.036 Sum_probs=92.9
Q ss_pred HHHHHHHcCCCC-CHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 047840 251 LFDRMVKSGTQP-TETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGG 329 (445)
Q Consensus 251 ~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 329 (445)
.+++.... .| +......+...+...|++++|...++.+... .+.+...+..+...+...|++++|...++...+.
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455443 33 3345566677788899999999999998863 2446778888889999999999999999998877
Q ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchh
Q 047840 330 LGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFST 371 (445)
Q Consensus 330 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 371 (445)
+ +.+...+..+...+...|++++|...|+++++.+|++...
T Consensus 81 ~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 81 D-PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred C-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 6 6678888889999999999999999999999999986643
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.53 E-value=8.6e-06 Score=78.15 Aligned_cols=324 Identities=14% Similarity=0.083 Sum_probs=197.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHcCCChHHHHHHhccCCCC-----ChhhHHHHHHHH
Q 047840 67 FVVSSLLEFYSLVHKMGTARALFDKSPD---RDVVTWTTMVDGYGKMGDFENARELFEKMPER-----NAVSWSAIMAAY 138 (445)
Q Consensus 67 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~ 138 (445)
..|..|...|....+...|...|+...+ .+...+......|++..+++.|..+.-...+. -...|....-.|
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 4677788888877788888888887655 36677888888999999999988884333332 122233445567
Q ss_pred HhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHH
Q 047840 139 SRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSAL 218 (445)
Q Consensus 139 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 218 (445)
.+.++..+|+.-|+...... +-|...|..+..+|...|.+..|.++|.++.... |.+...-.-..-..+..|.+.+|.
T Consensus 573 Lea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr-P~s~y~~fk~A~~ecd~GkYkeal 650 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR-PLSKYGRFKEAVMECDNGKYKEAL 650 (1238)
T ss_pred cCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC-cHhHHHHHHHHHHHHHhhhHHHHH
Confidence 78888889988888877653 2377888899999999999999999998887664 223333233344457778888888
Q ss_pred HHhhcCCCC----------ChhhHHHHHHHHHhcCChHHHHHHHHH-------HHHcCCCCCHHHHHHHHHH--------
Q 047840 219 SVFEGISNK----------DAGAWNAMISGVAMNGDAKKSLELFDR-------MVKSGTQPTETTFVAVLTT-------- 273 (445)
Q Consensus 219 ~~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~a~~~~~~-------m~~~~~~p~~~~~~~l~~~-------- 273 (445)
..+..+... -..++..+...+.-.|-..++.+.+++ ........+...|..+-.+
T Consensus 651 d~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e 730 (1238)
T KOG1127|consen 651 DALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEE 730 (1238)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhc
Confidence 887665421 112222222222222322222222222 2111111111111111111
Q ss_pred ---------------hhcCCcH---H---HHHHHHHHhHHhhCCCCChhHHHHHHHHHHh----cC----ChHHHHHHHH
Q 047840 274 ---------------CTHAKMV---R---DGLNLFENMSAVYGVEPQLEHYACVVDLLAR----AG----MVEEAEKFIE 324 (445)
Q Consensus 274 ---------------~~~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g----~~~~A~~~~~ 324 (445)
.-..+.. + -+.+.+-.-. .+..+..+|..++..|.+ .| +...|...+.
T Consensus 731 ~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hl---sl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~K 807 (1238)
T KOG1127|consen 731 PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHL---SLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCK 807 (1238)
T ss_pred ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHH---HHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHH
Confidence 1111111 1 0111111111 112234455555444433 22 2346777777
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 047840 325 EKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISE 397 (445)
Q Consensus 325 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 397 (445)
..++.. ..+..+|+.|.-. ...|++.-+...|-+.....|.....|..++-.+.+..+++.|...|.+...
T Consensus 808 kaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS 878 (1238)
T KOG1127|consen 808 KAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS 878 (1238)
T ss_pred HHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhh
Confidence 766555 5677788887766 6668888888899888889998888899999999999999999999987754
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=9e-05 Score=71.96 Aligned_cols=146 Identities=14% Similarity=0.189 Sum_probs=121.2
Q ss_pred CCCchhhhhHHHHHHHccCChHHHHHHhhcCCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 047840 194 LEKNVILATAVVDMYSKCGHVHSALSVFEGISN--K-DAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAV 270 (445)
Q Consensus 194 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 270 (445)
.+.+...+..|.....+.|.+++|..+++...+ | +......++..+.+.+++++|+..+++....... +......+
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~ 160 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLE 160 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence 356688899999999999999999999998765 3 5667888899999999999999999999887432 55666777
Q ss_pred HHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 047840 271 LTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLS 343 (445)
Q Consensus 271 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 343 (445)
..++.+.|++++|..+|+++... .+-+...+..+..++...|+.++|...|+...+.. .|....|+.++.
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~~ 230 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRLV 230 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHHH
Confidence 77889999999999999999963 23347888899999999999999999999998765 456666666553
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.5e-05 Score=61.69 Aligned_cols=127 Identities=13% Similarity=0.035 Sum_probs=84.3
Q ss_pred HHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCC--HHHHHHHH
Q 047840 266 TFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP-QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGD--ANVWGALL 342 (445)
Q Consensus 266 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~ 342 (445)
.|..++..+ ..++...+...++.+...++-.| .....-.+...+...|++++|...|+.+......|+ ......+.
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 344445444 36778888888888886521111 112233455677788888888888888887652222 23455677
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHH
Q 047840 343 SACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKL 394 (445)
Q Consensus 343 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 394 (445)
..+...|++++|+..++... ..+-.+..+...+++|.+.|++++|...|+.
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~-~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIP-DEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHcCCHHHHHHHHHhcc-CcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 78888888888888886632 2222455677788888888998888888875
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.40 E-value=7e-06 Score=58.33 Aligned_cols=94 Identities=19% Similarity=0.094 Sum_probs=77.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHc
Q 047840 303 YACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEA 382 (445)
Q Consensus 303 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 382 (445)
+..+...+...|++++|...+++..+.. +.+...+..+...+...+++++|.+.+++.....|.+...+..++.++...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 4556677788899999999998887665 455577888888888889999999999999988888777888888899999
Q ss_pred CChHHHHHHHHHHHh
Q 047840 383 GWDMEANKVRKLISE 397 (445)
Q Consensus 383 g~~~~A~~~~~~m~~ 397 (445)
|++++|...+....+
T Consensus 82 ~~~~~a~~~~~~~~~ 96 (100)
T cd00189 82 GKYEEALEAYEKALE 96 (100)
T ss_pred HhHHHHHHHHHHHHc
Confidence 999999988887754
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00014 Score=59.13 Aligned_cols=164 Identities=11% Similarity=0.045 Sum_probs=126.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH-HHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHH
Q 047840 232 WNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAV-LTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLL 310 (445)
Q Consensus 232 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 310 (445)
|..++-+....|+.+.|...++++.++ + |.+.-...+ ..-+-..|++++|.++++.+..+ -+.|..++.-=+...
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d--dpt~~v~~KRKlAil 130 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED--DPTDTVIRKRKLAIL 130 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc--CcchhHHHHHHHHHH
Confidence 344455666788999999999998876 3 444332222 22355679999999999999975 255666776666667
Q ss_pred HhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcC---ChHH
Q 047840 311 ARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG---WDME 387 (445)
Q Consensus 311 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~ 387 (445)
...|+.-+|++-+.+..+.- ..|...|..+...|...|++++|.-.+++++-..|-++..+..+++.+.-.| +..-
T Consensus 131 ka~GK~l~aIk~ln~YL~~F-~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 131 KAQGKNLEAIKELNEYLDKF-MNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred HHcCCcHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 77888889998888877654 7899999999999999999999999999999999999999999999876665 4555
Q ss_pred HHHHHHHHHhcCC
Q 047840 388 ANKVRKLISETGM 400 (445)
Q Consensus 388 A~~~~~~m~~~~~ 400 (445)
|.+++.+..+...
T Consensus 210 arkyy~~alkl~~ 222 (289)
T KOG3060|consen 210 ARKYYERALKLNP 222 (289)
T ss_pred HHHHHHHHHHhCh
Confidence 6677777665433
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.30 E-value=2e-05 Score=70.58 Aligned_cols=121 Identities=14% Similarity=0.124 Sum_probs=62.8
Q ss_pred HHHHHHcCCChHHHHHHhccCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHH
Q 047840 103 MVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQG 182 (445)
Q Consensus 103 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 182 (445)
|+..+...++++.|..+|+++.+.++.....+++.+...++..+|++++++..... +-+...+..-...+.+.++.+.|
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~~lA 253 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKYELA 253 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHH
Confidence 33444445555555555555555444444455555555555555555555555432 22444444444555555555555
Q ss_pred HHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCC
Q 047840 183 LWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS 225 (445)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 225 (445)
..+.+++.+.. |.+-.+|..|..+|.+.|+++.|+..++.++
T Consensus 254 L~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 254 LEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 55555555542 2333455555555555555555555555443
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.29 E-value=3.2e-05 Score=57.71 Aligned_cols=92 Identities=13% Similarity=-0.009 Sum_probs=43.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhcCCCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---chhHHHHHHH
Q 047840 305 CVVDLLARAGMVEEAEKFIEEKMGGLGGGD---ANVWGALLSACRIYGKIEVGNRVWRKLAEMGITD---FSTHVLSYNI 378 (445)
Q Consensus 305 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~ 378 (445)
.++..+.+.|++++|.+.|..+.+.. +.+ ...+..+..++...|+++.|...++.+....|.+ +.++..++.+
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKY-PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 34444445555555555555544332 111 2334444555555555555555555555544432 2334445555
Q ss_pred HHHcCChHHHHHHHHHHHh
Q 047840 379 YKEAGWDMEANKVRKLISE 397 (445)
Q Consensus 379 ~~~~g~~~~A~~~~~~m~~ 397 (445)
+.+.|++++|...++.+.+
T Consensus 86 ~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHhCChHHHHHHHHHHHH
Confidence 5555555555555555544
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.27 E-value=2e-06 Score=59.57 Aligned_cols=81 Identities=20% Similarity=0.077 Sum_probs=57.8
Q ss_pred cCChHHHHHHHHHHhcCCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHH
Q 047840 313 AGMVEEAEKFIEEKMGGLGG-GDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKV 391 (445)
Q Consensus 313 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 391 (445)
.|+++.|+.+++++.+.... ++...+..+..++.+.|++++|..++++ .+.++.++.....++.++.+.|++++|.++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 46778888888887765421 2455566678888888888888888888 666666666666778888888888888887
Q ss_pred HHH
Q 047840 392 RKL 394 (445)
Q Consensus 392 ~~~ 394 (445)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 764
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.7e-06 Score=47.50 Aligned_cols=33 Identities=24% Similarity=0.644 Sum_probs=27.8
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC
Q 047840 130 SWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPN 162 (445)
Q Consensus 130 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~ 162 (445)
+||.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688888888888888888888888888888876
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.7e-05 Score=70.07 Aligned_cols=109 Identities=13% Similarity=0.001 Sum_probs=92.4
Q ss_pred HHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCC
Q 047840 271 LTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGK 350 (445)
Q Consensus 271 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 350 (445)
...+...|++++|+..|+++.+. -+.+...|..+..+|...|++++|+..++++++.. +.+...|..+..+|...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCC
Confidence 44566789999999999999964 23457778888899999999999999999998876 6678899999999999999
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHc
Q 047840 351 IEVGNRVWRKLAEMGITDFSTHVLSYNIYKEA 382 (445)
Q Consensus 351 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 382 (445)
+++|+..|+++++.+|.++.....+..+..+.
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999887777665554443
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.20 E-value=3.3e-06 Score=46.80 Aligned_cols=33 Identities=33% Similarity=0.629 Sum_probs=25.5
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC
Q 047840 129 VSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKP 161 (445)
Q Consensus 129 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 161 (445)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777888888888888888888887777766
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.17 E-value=9e-05 Score=55.22 Aligned_cols=107 Identities=9% Similarity=0.008 Sum_probs=72.4
Q ss_pred HHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCC--CCCHHHHHHHH
Q 047840 266 TFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP-QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLG--GGDANVWGALL 342 (445)
Q Consensus 266 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~ 342 (445)
++..+...+...|++++|...+..+...+.-.+ ....+..+..++.+.|++++|...|+.+..... +....++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 444556666777888888888887775421111 133455677778888888888888888765431 11245677777
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCCchhH
Q 047840 343 SACRIYGKIEVGNRVWRKLAEMGITDFSTH 372 (445)
Q Consensus 343 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 372 (445)
.++...|+.++|...++++++..|++....
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 788888888888888888888888765443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.17 E-value=4.6e-06 Score=46.53 Aligned_cols=33 Identities=33% Similarity=0.762 Sum_probs=27.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 047840 231 AWNAMISGVAMNGDAKKSLELFDRMVKSGTQPT 263 (445)
Q Consensus 231 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 263 (445)
+|++++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 678888888888888888888888888888776
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=7.2e-05 Score=67.31 Aligned_cols=100 Identities=7% Similarity=0.031 Sum_probs=80.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcC
Q 047840 235 MISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAG 314 (445)
Q Consensus 235 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 314 (445)
-...+...|++++|++.|++...... -+...|..+..+|...|++++|+..++.+... -+.+...|..+..+|...|
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhC
Confidence 35567788999999999999998743 36777888888999999999999999999864 2335777888889999999
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHH
Q 047840 315 MVEEAEKFIEEKMGGLGGGDANVW 338 (445)
Q Consensus 315 ~~~~A~~~~~~~~~~~~~~~~~~~ 338 (445)
++++|...|++.++.. +.+....
T Consensus 85 ~~~eA~~~~~~al~l~-P~~~~~~ 107 (356)
T PLN03088 85 EYQTAKAALEKGASLA-PGDSRFT 107 (356)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHH
Confidence 9999999999998765 3344433
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.2e-05 Score=53.26 Aligned_cols=64 Identities=17% Similarity=0.029 Sum_probs=55.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcC-ChHHHHHHHHHHHh
Q 047840 334 DANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISE 397 (445)
Q Consensus 334 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~ 397 (445)
++.+|..+...+...|++++|+..|+++++.+|.++.++..++.+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46778888888999999999999999999999998889999999999998 68999988887764
|
... |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.5e-05 Score=51.96 Aligned_cols=60 Identities=15% Similarity=0.162 Sum_probs=30.7
Q ss_pred HHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 047840 308 DLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITD 368 (445)
Q Consensus 308 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 368 (445)
..+...|++++|.+.|+++++.. +-+...+..+..++...|++++|...|+++++..|++
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 34445555555555555555444 3344555555555555555555555555555555543
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00022 Score=55.25 Aligned_cols=126 Identities=13% Similarity=0.117 Sum_probs=86.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCCh--hHHHHHH
Q 047840 232 WNAMISGVAMNGDAKKSLELFDRMVKSGTQPT--ETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL--EHYACVV 307 (445)
Q Consensus 232 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~ 307 (445)
|..++..+ ..++...+...++.+......-. ......+...+...|++++|...|+.+... ...|+. .....|.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHH
Confidence 44445544 47888888888888887632211 223333456677889999999999998875 322221 2334467
Q ss_pred HHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 047840 308 DLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKL 361 (445)
Q Consensus 308 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 361 (445)
..+...|++++|+..++..... ...+..+......+...|+.++|...|+++
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 7788899999999999775322 345566778888899999999999988875
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00023 Score=62.05 Aligned_cols=158 Identities=10% Similarity=0.002 Sum_probs=102.1
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH--hhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHH--------
Q 047840 237 SGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTT--CTHAKMVRDGLNLFENMSAVYGVEPQLEHYACV-------- 306 (445)
Q Consensus 237 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-------- 306 (445)
.++.-.|++++|...--...+... ...+...+++ +-..++.+.+...|.+.. .+.|+...-..+
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld~---~n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le 250 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLDA---TNAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLE 250 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhccc---chhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHH
Confidence 345566777777776665555321 1122223333 335567777777777776 335543322111
Q ss_pred -----HHHHHhcCChHHHHHHHHHHhcC---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 047840 307 -----VDLLARAGMVEEAEKFIEEKMGG---LGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNI 378 (445)
Q Consensus 307 -----~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 378 (445)
..-..+.|++.+|.+.|.+.+.. +..|+...|.....+..+.|+..+|+.-.+.+..+++.-..++..-+.+
T Consensus 251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c 330 (486)
T KOG0550|consen 251 VKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANC 330 (486)
T ss_pred HHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHH
Confidence 12234678888888888887643 2345556677677777788888888888888888888777778888888
Q ss_pred HHHcCChHHHHHHHHHHHhcCC
Q 047840 379 YKEAGWDMEANKVRKLISETGM 400 (445)
Q Consensus 379 ~~~~g~~~~A~~~~~~m~~~~~ 400 (445)
+...++|++|.+-++...+..-
T Consensus 331 ~l~le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 331 HLALEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred HHHHHHHHHHHHHHHHHHhhcc
Confidence 8888888888887777665433
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.12 E-value=5e-05 Score=53.75 Aligned_cols=95 Identities=17% Similarity=0.098 Sum_probs=57.5
Q ss_pred HHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHc
Q 047840 269 AVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIY 348 (445)
Q Consensus 269 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 348 (445)
.+...+...|++++|...++.+.+. .+.+...+..+...+...|++++|.+.++...+.. +.+..++..+...+...
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHH
Confidence 3444455566666666666666542 12233455556666666677777777776666544 34445666666667777
Q ss_pred CChHHHHHHHHHHHHhCC
Q 047840 349 GKIEVGNRVWRKLAEMGI 366 (445)
Q Consensus 349 g~~~~a~~~~~~~~~~~~ 366 (445)
|+.+.|...+.+..+..|
T Consensus 82 ~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 82 GKYEEALEAYEKALELDP 99 (100)
T ss_pred HhHHHHHHHHHHHHccCC
Confidence 777777777776666554
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.10 E-value=4.5e-05 Score=63.70 Aligned_cols=109 Identities=16% Similarity=0.094 Sum_probs=80.9
Q ss_pred hhcCCcHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChH
Q 047840 274 CTHAKMVRDGLNLFENMSAVYGVEP-QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIE 352 (445)
Q Consensus 274 ~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 352 (445)
+.+.+++.+|...|.+.+. +.| |...|..=..+|.+.|.++.|.+-.+..+..+ +....+|..|..+|...|+++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHH
Confidence 4567888888888888884 344 45556666778888888888888888777655 445678888888888888888
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChH
Q 047840 353 VGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDM 386 (445)
Q Consensus 353 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 386 (445)
+|++.|+++++++|++......|-.+-.+.+...
T Consensus 167 ~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 167 EAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 8888888888888887766666666555555444
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.09 E-value=8e-06 Score=45.17 Aligned_cols=33 Identities=36% Similarity=0.711 Sum_probs=23.5
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 047840 230 GAWNAMISGVAMNGDAKKSLELFDRMVKSGTQP 262 (445)
Q Consensus 230 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 262 (445)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777665
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0039 Score=60.04 Aligned_cols=102 Identities=16% Similarity=0.184 Sum_probs=52.6
Q ss_pred cCCChHHHHHHhccCCC--CChhhHHHHHHH--HHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHH
Q 047840 109 KMGDFENARELFEKMPE--RNAVSWSAIMAA--YSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLW 184 (445)
Q Consensus 109 ~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 184 (445)
..+++..|.+...++.+ |+. .|...+.+ +.+.|+.++|..+++.....+.. |..|...+-..|...++.++|..
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHH
Confidence 44555555555555543 222 12222222 34556666666555555443322 55566666666666666666666
Q ss_pred HHHHHHHcCCCCchhhhhHHHHHHHccCCh
Q 047840 185 VHSYAKRYHLEKNVILATAVVDMYSKCGHV 214 (445)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 214 (445)
+|++..+. .|+......+..+|.+.+.+
T Consensus 99 ~Ye~~~~~--~P~eell~~lFmayvR~~~y 126 (932)
T KOG2053|consen 99 LYERANQK--YPSEELLYHLFMAYVREKSY 126 (932)
T ss_pred HHHHHHhh--CCcHHHHHHHHHHHHHHHHH
Confidence 66666554 33444445555555555544
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00028 Score=59.40 Aligned_cols=108 Identities=12% Similarity=0.034 Sum_probs=90.6
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHhCCCCchhHH
Q 047840 297 EPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYG---KIEVGNRVWRKLAEMGITDFSTHV 373 (445)
Q Consensus 297 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~ 373 (445)
+-|...|-.|..+|...|++..|..-|.+..+.. ++++..+..+..++.... ...++..+|++++..+|.++.+..
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 5678899999999999999999999999988776 677888887777764432 347889999999999999999999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCccCCc
Q 047840 374 LSYNIYKEAGWDMEANKVRKLISETGMKKKPG 405 (445)
Q Consensus 374 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 405 (445)
.|+..+...|++.+|...++.|.+..-...|.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~r 263 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPADDPR 263 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCCCch
Confidence 99999999999999999999998765544443
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00013 Score=58.39 Aligned_cols=85 Identities=14% Similarity=-0.034 Sum_probs=61.0
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 047840 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGD--ANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYN 377 (445)
Q Consensus 300 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 377 (445)
...+..+...+...|++++|...|++.++....+. ...+..+...+...|++++|...++++++..|.+...+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 34455666667777888888888877765432221 3567777778888888888888888888888877777777777
Q ss_pred HHHHcCC
Q 047840 378 IYKEAGW 384 (445)
Q Consensus 378 ~~~~~g~ 384 (445)
++...|+
T Consensus 115 ~~~~~g~ 121 (172)
T PRK02603 115 IYHKRGE 121 (172)
T ss_pred HHHHcCC
Confidence 7777766
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0003 Score=61.03 Aligned_cols=136 Identities=15% Similarity=0.207 Sum_probs=103.7
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-hhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHH
Q 047840 230 GAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTT-CTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVD 308 (445)
Q Consensus 230 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 308 (445)
.+|..++....+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+. +..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 467888888888889999999999998543 2234445444444 33457788899999999985 4567788889999
Q ss_pred HHHhcCChHHHHHHHHHHhcCCCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCc
Q 047840 309 LLARAGMVEEAEKFIEEKMGGLGGGDA---NVWGALLSACRIYGKIEVGNRVWRKLAEMGITDF 369 (445)
Q Consensus 309 ~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 369 (445)
.+...|+.+.|..+|++.+.. +.++. ..|...+..-.+.|+.+.+..+.+++.+.-|.+.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999999866 23333 5899999999999999999999999999877743
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0091 Score=53.21 Aligned_cols=381 Identities=9% Similarity=0.004 Sum_probs=198.6
Q ss_pred hhhcCCchHHHHHHHHHHhcCCCCCcc------cHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHH--H
Q 047840 5 YMQANFPKLSVFCYLDMLDMGFEPNNY------TFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEF--Y 76 (445)
Q Consensus 5 ~~~~g~~~~A~~~~~~m~~~~~~p~~~------~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~ 76 (445)
+-+++++.+|..+|.+..+.- ..++. .-+.+++++... +.+ ..........+. .| ...|-.+..+ +
T Consensus 16 Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl~-nld-~Me~~l~~l~~~--~~-~s~~l~LF~~L~~ 89 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFLN-NLD-LMEKQLMELRQQ--FG-KSAYLPLFKALVA 89 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHHh-hHH-HHHHHHHHHHHh--cC-CchHHHHHHHHHH
Confidence 456899999999999987642 22222 234566776554 444 444444444442 22 2233333333 3
Q ss_pred HhcCCHHHHHHHhccCCC-------C-----------ChhhHHHHHHHHHcCCChHHHHHHhccCCC--------CChhh
Q 047840 77 SLVHKMGTARALFDKSPD-------R-----------DVVTWTTMVDGYGKMGDFENARELFEKMPE--------RNAVS 130 (445)
Q Consensus 77 ~~~g~~~~a~~~~~~~~~-------~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~ 130 (445)
-+.+.+++|.+.+..-.+ | |...-+..++++++.|.+.++..+++++.. -+..+
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~ 169 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM 169 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence 367889998888753221 1 222234567888999999999999998864 27778
Q ss_pred HHHHHHHHHhc--------CC-------HhHHHHHHHHHHHc------CCCCCHHHHHHHHHHHHccC--ChhHHHHHHH
Q 047840 131 WSAIMAAYSRI--------SD-------FKEVLSLFRQMQEV------GMKPNESGLVSVLTACAHLG--AITQGLWVHS 187 (445)
Q Consensus 131 ~~~l~~~~~~~--------~~-------~~~a~~~~~~~~~~------~~~p~~~~~~~l~~~~~~~~--~~~~a~~~~~ 187 (445)
|+.++-.+.+. .. ++.++-...++... .+-|....+..++....-.. ...--.++++
T Consensus 170 yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~ 249 (549)
T PF07079_consen 170 YDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILE 249 (549)
T ss_pred HHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHH
Confidence 88754433322 11 22233333333221 23344444444443332211 1122223333
Q ss_pred HHHHcCCCCchh-hhhHHHHHHHccCChHHHHHHhhcCC--------CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 047840 188 YAKRYHLEKNVI-LATAVVDMYSKCGHVHSALSVFEGIS--------NKDAGAWNAMISGVAMNGDAKKSLELFDRMVKS 258 (445)
Q Consensus 188 ~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 258 (445)
.....-+.|+-. +...|...+.. +.+++..+-+.+. +.=+.++..++....+.++...|-..+.-+..-
T Consensus 250 ~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l 327 (549)
T PF07079_consen 250 NWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL 327 (549)
T ss_pred HHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence 333333333321 22223333322 2222222222111 112234444455555555555554444433321
Q ss_pred CC------------------------------------------CCCHH-HHHHHHHH---hhcCCc-HHHHHHHHHHhH
Q 047840 259 GT------------------------------------------QPTET-TFVAVLTT---CTHAKM-VRDGLNLFENMS 291 (445)
Q Consensus 259 ~~------------------------------------------~p~~~-~~~~l~~~---~~~~~~-~~~a~~~~~~~~ 291 (445)
.. ..|.. ....++.+ +-+.|. -++|..+++.+.
T Consensus 328 dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il 407 (549)
T PF07079_consen 328 DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLIL 407 (549)
T ss_pred CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 10 00111 11111111 233344 667777777776
Q ss_pred HhhCCCCChhHHHHHH----HHHHh---cCChHHHHHHHHHHhcCCCCCC----HHHHHHHHHH--HHHcCChHHHHHHH
Q 047840 292 AVYGVEPQLEHYACVV----DLLAR---AGMVEEAEKFIEEKMGGLGGGD----ANVWGALLSA--CRIYGKIEVGNRVW 358 (445)
Q Consensus 292 ~~~~~~~~~~~~~~l~----~~~~~---~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~--~~~~g~~~~a~~~~ 358 (445)
+- -+-|..+-|.+. ..|.. ...+.+-..+-+-+.+.|++|- ...-|.|.+| +...|++.++.-.-
T Consensus 408 ~f--t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys 485 (549)
T PF07079_consen 408 QF--TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYS 485 (549)
T ss_pred Hh--ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 42 122333333222 22322 2344555555555566687763 3455666655 46789999999999
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHH
Q 047840 359 RKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLIS 396 (445)
Q Consensus 359 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 396 (445)
..+.+..| ++.+|..++-+.....++++|+.++..+.
T Consensus 486 ~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 486 SWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 99999999 78999999999999999999999998654
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00034 Score=55.99 Aligned_cols=127 Identities=11% Similarity=0.155 Sum_probs=58.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHH
Q 047840 231 AWNAMISGVAMNGDAKKSLELFDRMVKSGTQPT--ETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVD 308 (445)
Q Consensus 231 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 308 (445)
.+..+...+...|++++|...|++..+.+..+. ...+..+...+.+.|++++|...+.+.... .+.+...+..+..
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 114 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHH
Confidence 444444555555555555555555544322211 233444444455555555555555554432 1112333333444
Q ss_pred HHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcC
Q 047840 309 LLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG 383 (445)
Q Consensus 309 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 383 (445)
++...|+...+..-++... ..+++|.++++++.+.+|++ +..++..+...|
T Consensus 115 ~~~~~g~~~~a~~~~~~A~---------------------~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~ 165 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAE---------------------ALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTG 165 (172)
T ss_pred HHHHcCChHhHhhCHHHHH---------------------HHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcC
Confidence 4444444333332222111 11567777888887777765 444444444333
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.00 E-value=2.2e-05 Score=51.20 Aligned_cols=58 Identities=16% Similarity=-0.000 Sum_probs=53.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 341 LLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 341 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
+...+...|++++|...|+++++..|.++..+..++.++...|++++|...++++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5677889999999999999999999999999999999999999999999999998754
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.00 E-value=3.9e-05 Score=64.01 Aligned_cols=88 Identities=16% Similarity=-0.064 Sum_probs=81.5
Q ss_pred HHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHH
Q 047840 309 LLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEA 388 (445)
Q Consensus 309 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 388 (445)
-+.+.+++.+|+..|.+.+... +.|++.|..-..+|.+.|.++.|++-.+..+..+|....+|..|+.+|...|++++|
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 3567899999999999999877 778899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 047840 389 NKVRKLISE 397 (445)
Q Consensus 389 ~~~~~~m~~ 397 (445)
.+.|++..+
T Consensus 169 ~~aykKaLe 177 (304)
T KOG0553|consen 169 IEAYKKALE 177 (304)
T ss_pred HHHHHhhhc
Confidence 999887654
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00025 Score=52.08 Aligned_cols=90 Identities=16% Similarity=-0.008 Sum_probs=65.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHhcCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---CchhHHHHHHHHH
Q 047840 306 VVDLLARAGMVEEAEKFIEEKMGGLGGGD--ANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT---DFSTHVLSYNIYK 380 (445)
Q Consensus 306 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~ 380 (445)
+..++-..|+.++|+.+|++....|+... ...+..+...+...|++++|..++++.....|+ +......++.++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 34456677888888888888877775443 345666777888888888888888888877676 5555566677788
Q ss_pred HcCChHHHHHHHHHH
Q 047840 381 EAGWDMEANKVRKLI 395 (445)
Q Consensus 381 ~~g~~~~A~~~~~~m 395 (445)
..|++++|.+.+-..
T Consensus 87 ~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 87 NLGRPKEALEWLLEA 101 (120)
T ss_pred HCCCHHHHHHHHHHH
Confidence 888888888865443
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00016 Score=57.68 Aligned_cols=97 Identities=12% Similarity=-0.175 Sum_probs=77.8
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHH
Q 047840 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGG--DANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY 376 (445)
Q Consensus 299 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 376 (445)
....+..+...+...|++++|...|++.......+ ...++..+...+...|++++|+..++++.+..|.....+..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 35566777778888999999999999987553222 2357888999999999999999999999999988888888888
Q ss_pred HHHH-------HcCChHHHHHHHHHH
Q 047840 377 NIYK-------EAGWDMEANKVRKLI 395 (445)
Q Consensus 377 ~~~~-------~~g~~~~A~~~~~~m 395 (445)
.++. +.|++++|...+++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 8887 888888777666554
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.95 E-value=4.5e-05 Score=50.40 Aligned_cols=67 Identities=18% Similarity=0.138 Sum_probs=58.5
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCC
Q 047840 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYG-KIEVGNRVWRKLAEMGI 366 (445)
Q Consensus 299 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~ 366 (445)
++..|..+...+...|++++|+..|++.++.. +.+...|..+..++...| ++++|++.++++++.+|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45678888889999999999999999988877 667888999999999999 79999999999998877
|
... |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.94 E-value=3.4e-05 Score=53.32 Aligned_cols=81 Identities=14% Similarity=0.152 Sum_probs=35.8
Q ss_pred CcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 047840 278 KMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRV 357 (445)
Q Consensus 278 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 357 (445)
|+++.|+.+++++.......|+...+-.+..+|.+.|++++|..+++. .+.+ +.+......+..++...|++++|++.
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 455555555555554311111223333345555555555555555554 2112 12223333335555555555555555
Q ss_pred HHH
Q 047840 358 WRK 360 (445)
Q Consensus 358 ~~~ 360 (445)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 544
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.90 E-value=3e-05 Score=51.10 Aligned_cols=54 Identities=13% Similarity=0.144 Sum_probs=21.9
Q ss_pred cCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 047840 313 AGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT 367 (445)
Q Consensus 313 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 367 (445)
.|++++|.++|+++.... +.+...+..+..+|.+.|++++|.++++++....|+
T Consensus 4 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp TTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 344444444444443333 223334444444444444444444444444444443
|
... |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00075 Score=58.83 Aligned_cols=204 Identities=11% Similarity=0.175 Sum_probs=100.0
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHH
Q 047840 131 WSAIMAAYSRISDFKEVLSLFRQMQEV----GMKPN-ESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVV 205 (445)
Q Consensus 131 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 205 (445)
|......|...|++++|.+.|.+.... +-+.+ ...|......+ +..++++|...+++..
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~A~--------------- 101 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIECYEKAI--------------- 101 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHHHHHHHH---------------
Confidence 444566677777777777777665331 10000 11222222333 2235555555554443
Q ss_pred HHHHccCChHHHHHHhhcCCCCChhhHHHHHHHHHhc-CChHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHhhcCC
Q 047840 206 DMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMN-GDAKKSLELFDRMVKS----GTQPT--ETTFVAVLTTCTHAK 278 (445)
Q Consensus 206 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~----~~~p~--~~~~~~l~~~~~~~~ 278 (445)
..|...|++..|-.++ ..+...|... |++++|++.|++..+. | .+. ...+..+...+.+.|
T Consensus 102 ~~y~~~G~~~~aA~~~-----------~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~ 169 (282)
T PF14938_consen 102 EIYREAGRFSQAAKCL-----------KELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLG 169 (282)
T ss_dssp HHHHHCT-HHHHHHHH-----------HHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhcCcHHHHHHHH-----------HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhC
Confidence 4456666666665543 3345555555 6777777777665432 2 111 223455556677777
Q ss_pred cHHHHHHHHHHhHHhhCCCC-----Chh-HHHHHHHHHHhcCChHHHHHHHHHHhcCC--CCC--CHHHHHHHHHHHHH-
Q 047840 279 MVRDGLNLFENMSAVYGVEP-----QLE-HYACVVDLLARAGMVEEAEKFIEEKMGGL--GGG--DANVWGALLSACRI- 347 (445)
Q Consensus 279 ~~~~a~~~~~~~~~~~~~~~-----~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~--~~~~~~~l~~~~~~- 347 (445)
++++|.++|+++... .... +.. .+-..+-++...|++..|.+.+++..... +.. .......|+.++-.
T Consensus 170 ~y~~A~~~~e~~~~~-~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~ 248 (282)
T PF14938_consen 170 RYEEAIEIYEEVAKK-CLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEG 248 (282)
T ss_dssp -HHHHHHHHHHHHHT-CCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHH-hhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhC
Confidence 788888777777653 1111 111 12222334555677777777777765432 212 23455666666643
Q ss_pred -cCChHHHHHHHHHHHH
Q 047840 348 -YGKIEVGNRVWRKLAE 363 (445)
Q Consensus 348 -~g~~~~a~~~~~~~~~ 363 (445)
...++.++.-|+.+.+
T Consensus 249 D~e~f~~av~~~d~~~~ 265 (282)
T PF14938_consen 249 DVEAFTEAVAEYDSISR 265 (282)
T ss_dssp -CCCHHHHCHHHTTSS-
T ss_pred CHHHHHHHHHHHcccCc
Confidence 2234444444444433
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00029 Score=54.00 Aligned_cols=89 Identities=12% Similarity=0.054 Sum_probs=77.4
Q ss_pred HHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHH
Q 047840 308 DLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDME 387 (445)
Q Consensus 308 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 387 (445)
.-+...|++++|..+|+-+.-.+ +-+..-|..|..++-..+++++|+..|..+...+++||.+....+.+|...|+.+.
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHH
Confidence 33457899999999999887666 55677788888888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 047840 388 ANKVRKLISE 397 (445)
Q Consensus 388 A~~~~~~m~~ 397 (445)
|...|....+
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 9999988776
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0022 Score=55.90 Aligned_cols=146 Identities=15% Similarity=0.097 Sum_probs=89.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcC-CcHHHHHHHHHHhHHhhCCCCC----hhHHHHHHHH
Q 047840 235 MISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHA-KMVRDGLNLFENMSAVYGVEPQ----LEHYACVVDL 309 (445)
Q Consensus 235 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~ 309 (445)
.+..|...|++..|-+.+.+ +...|... |+++.|.+.|++....+..... ..++..+...
T Consensus 100 A~~~y~~~G~~~~aA~~~~~---------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l 164 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLKE---------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADL 164 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHHH---------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHH---------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHH
Confidence 34556666666665555544 44567777 8999999999888765432222 3455677888
Q ss_pred HHhcCChHHHHHHHHHHhcCCCC-----CCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--C---chhHHHHHHH
Q 047840 310 LARAGMVEEAEKFIEEKMGGLGG-----GDAN-VWGALLSACRIYGKIEVGNRVWRKLAEMGIT--D---FSTHVLSYNI 378 (445)
Q Consensus 310 ~~~~g~~~~A~~~~~~~~~~~~~-----~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~---~~~~~~l~~~ 378 (445)
+.+.|++++|.++|+++...... .+.. .+...+-++...|+...|.+.+++.....|. + ......|+.+
T Consensus 165 ~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A 244 (282)
T PF14938_consen 165 YARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEA 244 (282)
T ss_dssp HHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHH
Confidence 99999999999999998654322 1222 2334444667789999999999999988875 2 2233345555
Q ss_pred HHHc--CChHHHHHHHHHH
Q 047840 379 YKEA--GWDMEANKVRKLI 395 (445)
Q Consensus 379 ~~~~--g~~~~A~~~~~~m 395 (445)
+-.. ..+.+|..-|+.+
T Consensus 245 ~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 245 YEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHTT-CCCHHHHCHHHTTS
T ss_pred HHhCCHHHHHHHHHHHccc
Confidence 5442 3445555555433
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.86 E-value=2.4e-05 Score=42.10 Aligned_cols=29 Identities=28% Similarity=0.795 Sum_probs=20.8
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHHcC
Q 047840 130 SWSAIMAAYSRISDFKEVLSLFRQMQEVG 158 (445)
Q Consensus 130 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 158 (445)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 57777777777777777777777776655
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0017 Score=61.23 Aligned_cols=67 Identities=10% Similarity=0.016 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCc
Q 047840 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDF 369 (445)
Q Consensus 301 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 369 (445)
..|.++.-.....|++++|...+++..+.+ |+...|..+...+...|+.++|.+.++++..++|.++
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 444444444444555555555555555443 3455555555555555555555555555555555544
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00034 Score=60.72 Aligned_cols=131 Identities=11% Similarity=0.059 Sum_probs=101.6
Q ss_pred HHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHh-cCChHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 047840 265 TTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLAR-AGMVEEAEKFIEEKMGGLGGGDANVWGALLS 343 (445)
Q Consensus 265 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 343 (445)
.+|..++....+.+..+.|..+|.++.+. -..+..+|-..+..-.. .++.+.|.++|+..++.- +.+...|...+.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f-~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD--KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF-PSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 46888888888999999999999999853 23344555544444233 567777999999988763 678899999999
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCC---chhHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 344 ACRIYGKIEVGNRVWRKLAEMGITD---FSTHVLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 344 ~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
.+...++.+.|..+|++.+..-+.+ ...|...+..-.+.|+.+.+..+.+++.+.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999875543 357888899999999999999999988764
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.81 E-value=4.8e-05 Score=50.12 Aligned_cols=53 Identities=13% Similarity=0.088 Sum_probs=48.6
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 346 RIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 346 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
...|++++|++.|+++.+..|.+..+...++.+|.+.|++++|.++++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 56799999999999999999999999999999999999999999999987754
|
... |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00033 Score=63.28 Aligned_cols=73 Identities=14% Similarity=0.140 Sum_probs=40.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHH
Q 047840 231 AWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYA 304 (445)
Q Consensus 231 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 304 (445)
+..++++.|...|..+.++.+++.=...|+-||.++++.+|..+.+.|++..|.++...|..+ +...+..|+.
T Consensus 105 t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQ-e~~~~~~t~~ 177 (429)
T PF10037_consen 105 THHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQ-EEFDNPSTQA 177 (429)
T ss_pred cHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHh-hccCCchHHH
Confidence 334555555555555555555555555556666666666666666666666665555555544 3333434433
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.037 Score=52.64 Aligned_cols=115 Identities=17% Similarity=0.124 Sum_probs=87.2
Q ss_pred CCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHH
Q 047840 261 QPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGA 340 (445)
Q Consensus 261 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 340 (445)
....-+.+--+.-+...|+..+|.++-.+.+ -||...|-.-+.+++..+++++-+++-+... .+.-|.-
T Consensus 681 ~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~P 749 (829)
T KOG2280|consen 681 SFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLP 749 (829)
T ss_pred ccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchh
Confidence 3445556666677777888899988877775 5888888888889999999998888776652 2556788
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHH
Q 047840 341 LLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKL 394 (445)
Q Consensus 341 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 394 (445)
+..+|.+.|+.++|..++-+.-. +.....+|.+.|++.+|.++--+
T Consensus 750 FVe~c~~~~n~~EA~KYiprv~~--------l~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 750 FVEACLKQGNKDEAKKYIPRVGG--------LQEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHHHHhcccHHHHhhhhhccCC--------hHHHHHHHHHhccHHHHHHHHHH
Confidence 88999999999999888765421 22677889999999998875443
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00049 Score=48.62 Aligned_cols=79 Identities=18% Similarity=0.128 Sum_probs=66.4
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHccC--------ChhHHHHHHHHHHHcCCCCchhhhh
Q 047840 132 SAIMAAYSRISDFKEVLSLFRQMQEVGM-KPNESGLVSVLTACAHLG--------AITQGLWVHSYAKRYHLEKNVILAT 202 (445)
Q Consensus 132 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 202 (445)
...|..+...+++.....+|+.+...|+ .|+..+|+.++.+.++.. ++-+.+.+|+.|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4456667777999999999999999999 899999999999877654 3445678999999999999999999
Q ss_pred HHHHHHHc
Q 047840 203 AVVDMYSK 210 (445)
Q Consensus 203 ~l~~~~~~ 210 (445)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99888765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.76 E-value=4.4e-05 Score=41.06 Aligned_cols=29 Identities=38% Similarity=0.702 Sum_probs=20.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 047840 231 AWNAMISGVAMNGDAKKSLELFDRMVKSG 259 (445)
Q Consensus 231 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 259 (445)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56777777777777777777777776655
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00022 Score=47.71 Aligned_cols=60 Identities=17% Similarity=0.128 Sum_probs=31.7
Q ss_pred HHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCc
Q 047840 309 LLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDF 369 (445)
Q Consensus 309 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 369 (445)
.|.+.+++++|.++++.++..+ |.++..|......+...|++++|.+.|++.++..|+++
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~ 63 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDP 63 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcH
Confidence 3445555555555555555444 34445555555555555555555555555555555443
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00075 Score=51.51 Aligned_cols=95 Identities=6% Similarity=-0.057 Sum_probs=75.5
Q ss_pred HHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 047840 267 FVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP-QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSAC 345 (445)
Q Consensus 267 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 345 (445)
.-.+..-+...|++++|..+|+.+..- .| +..-|-.|.-++-..|++++|+..|....... +.|+..+-.+..++
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~---Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~ 113 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIY---DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHH
Confidence 334445566789999999999888753 44 45566778888888899999999999888777 67888888889999
Q ss_pred HHcCChHHHHHHHHHHHHhC
Q 047840 346 RIYGKIEVGNRVWRKLAEMG 365 (445)
Q Consensus 346 ~~~g~~~~a~~~~~~~~~~~ 365 (445)
...|+.+.|.+.|+.++...
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHh
Confidence 99999999999999888754
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00017 Score=48.21 Aligned_cols=58 Identities=14% Similarity=-0.065 Sum_probs=53.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 047840 342 LSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETG 399 (445)
Q Consensus 342 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 399 (445)
...|.+.+++++|.+.+++++..+|+++..+...+.++.+.|++.+|.+.++...+.+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 3578899999999999999999999999999999999999999999999999988654
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0021 Score=49.95 Aligned_cols=155 Identities=8% Similarity=-0.025 Sum_probs=114.4
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChH
Q 047840 238 GVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVE 317 (445)
Q Consensus 238 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 317 (445)
+..+.=+++...+-..+-.. ..|+...-..|..++...|+..+|...|.+.... -+.-|......+.++....+++.
T Consensus 65 a~~q~ldP~R~~Rea~~~~~--~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A 141 (251)
T COG4700 65 ALQQKLDPERHLREATEELA--IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFA 141 (251)
T ss_pred HHHHhcChhHHHHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHH
Confidence 33444456655544433333 4678887788899999999999999999999863 34556777788889999999999
Q ss_pred HHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHH
Q 047840 318 EAEKFIEEKMGGLG-GGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLIS 396 (445)
Q Consensus 318 ~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 396 (445)
.|...++.+.+.+. ...+.+...+.+.+...|+...|...|+.++...|. +..-......+.++|+.++|..-+..+.
T Consensus 142 ~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 142 AAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 99999999876541 112344566788899999999999999999997775 3344456677888998888776554443
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0005 Score=62.16 Aligned_cols=116 Identities=11% Similarity=0.113 Sum_probs=86.7
Q ss_pred ChhhHHHHHHHHHcCCChHHHHHHhccCCC-C-----ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHH
Q 047840 96 DVVTWTTMVDGYGKMGDFENARELFEKMPE-R-----NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSV 169 (445)
Q Consensus 96 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 169 (445)
+......+++.+....+.+++..++.+... | -..|..++++.|.+.|..+.++.++..=...|+-||..+++.+
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 445556666666677777778777777654 1 2345568888888888888888888888888888888888888
Q ss_pred HHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHcc
Q 047840 170 LTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKC 211 (445)
Q Consensus 170 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 211 (445)
+..+.+.|++..|.++...|...+...++.++.-.+.+|.+.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888888888888777666666655555554444
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0014 Score=52.27 Aligned_cols=101 Identities=8% Similarity=0.004 Sum_probs=54.4
Q ss_pred HHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 047840 266 TFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP-QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSA 344 (445)
Q Consensus 266 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 344 (445)
.+..+...+...|++++|...|+.......-++ ...++..+..++...|++++|...++...... +....++..+...
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~i 115 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH
Confidence 344444455556666666666666653311111 12355566666666666666666666665443 3334445555555
Q ss_pred HH-------HcCChH-------HHHHHHHHHHHhCCC
Q 047840 345 CR-------IYGKIE-------VGNRVWRKLAEMGIT 367 (445)
Q Consensus 345 ~~-------~~g~~~-------~a~~~~~~~~~~~~~ 367 (445)
+. ..|+++ +|...+++.....|+
T Consensus 116 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~ 152 (168)
T CHL00033 116 CHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPG 152 (168)
T ss_pred HHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 54 566655 445555556666665
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0031 Score=59.52 Aligned_cols=136 Identities=12% Similarity=0.057 Sum_probs=98.3
Q ss_pred CCCCCHHHHHHHHHHhhc--C---CcHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHHhc--------CChHHHHHHHH
Q 047840 259 GTQPTETTFVAVLTTCTH--A---KMVRDGLNLFENMSAVYGVEPQ-LEHYACVVDLLARA--------GMVEEAEKFIE 324 (445)
Q Consensus 259 ~~~p~~~~~~~l~~~~~~--~---~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~--------g~~~~A~~~~~ 324 (445)
+.+.+...|...+.+... . ++...|..+|+++.+. .|+ ...|..+..++... ++...+.+...
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l---dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS---EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 456677888888887432 2 3477899999999964 676 34444444433322 12334445555
Q ss_pred HHhcC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 325 EKMGG-LGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 325 ~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
+.... ..+.++..+..+.-.....|++++|...+++++++.| +...|..++.++...|+.++|.+.+++....
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 44332 2345667888887777788999999999999999998 5778999999999999999999999887654
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.016 Score=45.28 Aligned_cols=134 Identities=8% Similarity=0.040 Sum_probs=91.9
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHH
Q 047840 228 DAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVV 307 (445)
Q Consensus 228 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 307 (445)
++..--.|..++...|+..+|...|.+....-..-|......+.++....++...|...++.+.+...-.-++.+...+.
T Consensus 88 Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~a 167 (251)
T COG4700 88 TVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFA 167 (251)
T ss_pred hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHH
Confidence 44445567778888888888888888877655556777777788888888888888888888775421111244455667
Q ss_pred HHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 047840 308 DLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAE 363 (445)
Q Consensus 308 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 363 (445)
.+|...|...+|+.-|+...+.- |+...-......+.+.|+.+++..-+..+.+
T Consensus 168 R~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 168 RTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 78888888888888888877553 5555544455566777777666655544443
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00083 Score=47.52 Aligned_cols=77 Identities=18% Similarity=0.299 Sum_probs=44.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHhhcCC--------cHHHHHHHHHHhHHhhCCCCChhHHH
Q 047840 234 AMISGVAMNGDAKKSLELFDRMVKSGT-QPTETTFVAVLTTCTHAK--------MVRDGLNLFENMSAVYGVEPQLEHYA 304 (445)
Q Consensus 234 ~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~ 304 (445)
..|..+...+++...-.+|+.+++.|+ -|+..+|+.++.+..+.. ++-..+.+|+.|... +++|+..+|+
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~etYn 108 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDETYN 108 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHHHHH
Confidence 344455555777777777777777777 677777777776654321 233344555555544 5555555555
Q ss_pred HHHHHHH
Q 047840 305 CVVDLLA 311 (445)
Q Consensus 305 ~l~~~~~ 311 (445)
.++..+.
T Consensus 109 ivl~~Ll 115 (120)
T PF08579_consen 109 IVLGSLL 115 (120)
T ss_pred HHHHHHH
Confidence 5555443
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0015 Score=47.95 Aligned_cols=93 Identities=16% Similarity=0.169 Sum_probs=62.4
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCChhHHHHHHHHHHHcCCC--CchhhhhHHHHHH
Q 047840 133 AIMAAYSRISDFKEVLSLFRQMQEVGMKPN--ESGLVSVLTACAHLGAITQGLWVHSYAKRYHLE--KNVILATAVVDMY 208 (445)
Q Consensus 133 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~ 208 (445)
.+..++-..|+.++|+.+|++....|+... ...+..+...+...|++++|..+++........ .+..+...+.-++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 455677788999999999999888776554 345666777888888888888888887765211 1222333334456
Q ss_pred HccCChHHHHHHhhcCC
Q 047840 209 SKCGHVHSALSVFEGIS 225 (445)
Q Consensus 209 ~~~g~~~~a~~~~~~~~ 225 (445)
...|+.++|.+.+-...
T Consensus 86 ~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 66677777776664433
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.03 Score=47.41 Aligned_cols=65 Identities=8% Similarity=0.020 Sum_probs=40.9
Q ss_pred ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCH-HHH---HHHHHHHHccCChhHHHHHHHHHHHcC
Q 047840 127 NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNE-SGL---VSVLTACAHLGAITQGLWVHSYAKRYH 193 (445)
Q Consensus 127 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~ 193 (445)
+...+-.....+...|++++|.+.|+++... .|+. ..- -.++.++.+.+++++|...+++..+..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 3333334455566778888888888887764 2332 221 345566777788888888887777653
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.065 Score=50.68 Aligned_cols=69 Identities=14% Similarity=0.295 Sum_probs=37.5
Q ss_pred cCCHHHHHHHhccCCCCChhhHHHHHHHHHcCCChHHHHHHhccCCCC-----ChhhHHHHHHHHHhcCCHhHHHHHHH
Q 047840 79 VHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPER-----NAVSWSAIMAAYSRISDFKEVLSLFR 152 (445)
Q Consensus 79 ~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~ 152 (445)
-|.+++|+++|-.+..+|. -|..+.+.|++-...++++.-... -..+|+.+...+.....|++|.+.|.
T Consensus 747 ~g~feeaek~yld~drrDL-----Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~ 820 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDL-----AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYS 820 (1189)
T ss_pred hcchhHhhhhhhccchhhh-----hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777766553 244455566666666665543221 12345555555555555555555443
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0058 Score=50.33 Aligned_cols=138 Identities=9% Similarity=0.034 Sum_probs=107.5
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHH---
Q 047840 230 GAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACV--- 306 (445)
Q Consensus 230 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l--- 306 (445)
...+.++..+.-.|.+.-.+.++++.++...+.++.....+++.-.+.|+.+.|...|++..+. .-+.+..+.+.+
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HhhhhccchhHHHHh
Confidence 3456777888888999999999999999877778888888999999999999999999988765 333444444333
Q ss_pred --HHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCc
Q 047840 307 --VDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDF 369 (445)
Q Consensus 307 --~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 369 (445)
...|.-.+++..|...+.++.... +.|+...|.-.-+..-.|+...|++.++.+++..|...
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 334556788999999999887766 56777666666666667899999999999999888643
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.002 Score=54.92 Aligned_cols=85 Identities=11% Similarity=-0.054 Sum_probs=40.2
Q ss_pred HhcCChHHHHHHHHHHhcCCCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---chhHHHHHHHHHHcCC
Q 047840 311 ARAGMVEEAEKFIEEKMGGLGGGD---ANVWGALLSACRIYGKIEVGNRVWRKLAEMGITD---FSTHVLSYNIYKEAGW 384 (445)
Q Consensus 311 ~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~ 384 (445)
.+.|++++|...|+.+++.. +-+ +..+-.+..+|...|++++|...|+.+++..|++ +.++..++.++...|+
T Consensus 154 ~~~~~y~~Ai~af~~fl~~y-P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~ 232 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKY-PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGD 232 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCC
Confidence 33455555555555554332 111 1234444555555555555555555555544442 2233334444555555
Q ss_pred hHHHHHHHHHHH
Q 047840 385 DMEANKVRKLIS 396 (445)
Q Consensus 385 ~~~A~~~~~~m~ 396 (445)
+++|..+++.+.
T Consensus 233 ~~~A~~~~~~vi 244 (263)
T PRK10803 233 TAKAKAVYQQVI 244 (263)
T ss_pred HHHHHHHHHHHH
Confidence 555555555544
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.012 Score=49.74 Aligned_cols=57 Identities=12% Similarity=-0.029 Sum_probs=37.7
Q ss_pred HHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhH---HHHHHHHHhcCCHHHHHHHhccCCC
Q 047840 36 LIKACVILGPLENFGMFVHAHVVKFGFGEDPFVV---SSLLEFYSLVHKMGTARALFDKSPD 94 (445)
Q Consensus 36 ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~ 94 (445)
....+...|+++ .|...|+.+...-+.+ .... -.++.++.+.++++.|...|++..+
T Consensus 38 ~A~~~~~~g~y~-~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~ 97 (243)
T PRK10866 38 TAQQKLQDGNWK-QAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR 97 (243)
T ss_pred HHHHHHHCCCHH-HHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 344456678888 8888888887743222 2222 3455777788888888888877654
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0023 Score=49.62 Aligned_cols=70 Identities=20% Similarity=0.168 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHH-----hcCCccCCc
Q 047840 336 NVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLIS-----ETGMKKKPG 405 (445)
Q Consensus 336 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~~~~~~~~ 405 (445)
.+...++..+...|++++|.+.+++++..+|-+...+..++.+|...|+..+|.+.|+++. +.|+.|.+.
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 3456677788899999999999999999999999999999999999999999999998885 458877543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0025 Score=55.83 Aligned_cols=132 Identities=9% Similarity=-0.002 Sum_probs=79.6
Q ss_pred HHHHHHHHHhhcCCcHHHHHHHHHH---hHHhhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHHHh----cCC-CCCCH
Q 047840 265 TTFVAVLTTCTHAKMVRDGLNLFEN---MSAVYGVEP-QLEHYACVVDLLARAGMVEEAEKFIEEKM----GGL-GGGDA 335 (445)
Q Consensus 265 ~~~~~l~~~~~~~~~~~~a~~~~~~---~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~-~~~~~ 335 (445)
..|..|...|.-.|+++.|+...+. +.+.+|-+. ....+..+..++.-.|+++.|.+.|+... +.| -....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 3455555556666777777765543 222233222 23455667777777788888877776532 222 12233
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHh------CCCCchhHHHHHHHHHHcCChHHHHHHHHHHH
Q 047840 336 NVWGALLSACRIYGKIEVGNRVWRKLAEM------GITDFSTHVLSYNIYKEAGWDMEANKVRKLIS 396 (445)
Q Consensus 336 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 396 (445)
.+.-.|..+|.-..++++|+.++.+-+.. ......++..|+.+|...|..+.|+.+...-.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 44556677777777778888777765441 12245677778888888888888877655544
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.021 Score=53.30 Aligned_cols=21 Identities=19% Similarity=0.221 Sum_probs=14.4
Q ss_pred HHHHHcCChHHHHHHHHHHHH
Q 047840 343 SACRIYGKIEVGNRVWRKLAE 363 (445)
Q Consensus 343 ~~~~~~g~~~~a~~~~~~~~~ 363 (445)
++|.+.|+-.+|.++++++..
T Consensus 825 kAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 825 KAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred HHHHHhcchHHHHHHHHHhhh
Confidence 455666777777777777655
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0037 Score=54.94 Aligned_cols=97 Identities=8% Similarity=-0.041 Sum_probs=84.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 047840 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIY 379 (445)
Q Consensus 300 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 379 (445)
..++..+.-+|.+.+++.+|+......+..+ ++|+...-.-..+|...|+++.|+..|+++++..|.|-.+-..++.+-
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~ 335 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLK 335 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 3466778888999999999999999999888 889999999999999999999999999999999999988888888887
Q ss_pred HHcCChHHH-HHHHHHHHh
Q 047840 380 KEAGWDMEA-NKVRKLISE 397 (445)
Q Consensus 380 ~~~g~~~~A-~~~~~~m~~ 397 (445)
.+.....+. .++|..|-.
T Consensus 336 ~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 777776665 558888853
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.017 Score=48.94 Aligned_cols=106 Identities=12% Similarity=0.067 Sum_probs=86.6
Q ss_pred CCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhc---CChHHHHHHHHHHhcCCCCCCHHH
Q 047840 261 QPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARA---GMVEEAEKFIEEKMGGLGGGDANV 337 (445)
Q Consensus 261 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~ 337 (445)
+-|...|..|...|...|+.+.|..-|....+.. .++...+..+..++... ....++..+|++++... +-|+.+
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~--g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~ira 229 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA--GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRA 229 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHH
Confidence 3478899999999999999999999999998642 44566666777665543 24578999999998877 778888
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCc
Q 047840 338 WGALLSACRIYGKIEVGNRVWRKLAEMGITDF 369 (445)
Q Consensus 338 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 369 (445)
...|...+...|++.+|...|+.|++..|++.
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 88888999999999999999999999888754
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.027 Score=46.57 Aligned_cols=128 Identities=11% Similarity=0.065 Sum_probs=87.5
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhH-----HH
Q 047840 131 WSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATA-----VV 205 (445)
Q Consensus 131 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----l~ 205 (445)
-+.++..+.-.|.+.--+..+.+.++...+.++.....+.+.-.+.||.+.|..+|++..+..-..+....+. ..
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 3456666677778888888888888766566777778888888888888888888887766443334333333 33
Q ss_pred HHHHccCChHHHHHHhhcCCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 047840 206 DMYSKCGHVHSALSVFEGISNK---DAGAWNAMISGVAMNGDAKKSLELFDRMVKS 258 (445)
Q Consensus 206 ~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 258 (445)
..|.-.+++..|...|.++... |+..-|.-.-+..-.|+...|++.++.|...
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4456667777888877766653 4445555444555567788888888888775
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0057 Score=52.23 Aligned_cols=102 Identities=12% Similarity=0.083 Sum_probs=73.2
Q ss_pred HHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCCh----hHHHHHHHHHHhcCChHHHHHHHHHHhcCC--CCCCHHHH
Q 047840 265 TTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL----EHYACVVDLLARAGMVEEAEKFIEEKMGGL--GGGDANVW 338 (445)
Q Consensus 265 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~ 338 (445)
..|...+..+.+.|++++|...|+.+.+. .|+. ..+-.+..+|...|++++|...|+.+.+.. -+.....+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~---yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKK---YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH---CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 34544444445668888888888888865 2332 455667788888899999999888887542 12234556
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCc
Q 047840 339 GALLSACRIYGKIEVGNRVWRKLAEMGITDF 369 (445)
Q Consensus 339 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 369 (445)
..++..+...|+.++|...|+++++..|.+.
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 6667778888999999999999998888755
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.039 Score=48.78 Aligned_cols=54 Identities=11% Similarity=-0.055 Sum_probs=23.8
Q ss_pred HHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCCC
Q 047840 173 CAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK 227 (445)
Q Consensus 173 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 227 (445)
+...|+.++|.++--..++.. ..+......-..++--.++.+.|...|++..+.
T Consensus 179 l~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l 232 (486)
T KOG0550|consen 179 LAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRL 232 (486)
T ss_pred hhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhcc
Confidence 345556666665555555443 111111111112233345556666666555543
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0021 Score=51.60 Aligned_cols=88 Identities=6% Similarity=0.146 Sum_probs=59.2
Q ss_pred CChhhHHHHHHHHHh-----cCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc----------------CChhHHHH
Q 047840 126 RNAVSWSAIMAAYSR-----ISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHL----------------GAITQGLW 184 (445)
Q Consensus 126 ~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----------------~~~~~a~~ 184 (445)
++-.+|..++..|.+ .|..+=....+..|.+-|+.-|..+|+.|++.+=+. .+.+-|++
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 455555555555543 355666666667777777777777777777765431 14456778
Q ss_pred HHHHHHHcCCCCchhhhhHHHHHHHccCC
Q 047840 185 VHSYAKRYHLEKNVILATAVVDMYSKCGH 213 (445)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 213 (445)
++++|...|+-||..++..+++.+.+.+.
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 88888888888888888888877776654
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.069 Score=47.64 Aligned_cols=164 Identities=15% Similarity=0.111 Sum_probs=98.7
Q ss_pred HHHHHHHccCChHHHHHHhhcCCCC-------ChhhHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047840 203 AVVDMYSKCGHVHSALSVFEGISNK-------DAGAWNAMISGVAM---NGDAKKSLELFDRMVKSGTQPTETTFVAVLT 272 (445)
Q Consensus 203 ~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 272 (445)
.++-+|....+++...++++.+... ....-....-++.+ .|+.++|++++..+......+++.+|..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4555567777777777777766553 11122233445555 7888888888888655556677777777666
Q ss_pred Hhhc---------CCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCCh-H---HHHHHH---HH-HhcCC---CC
Q 047840 273 TCTH---------AKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMV-E---EAEKFI---EE-KMGGL---GG 332 (445)
Q Consensus 273 ~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~---~A~~~~---~~-~~~~~---~~ 332 (445)
.|-. ....++|+..|.+.- .+.|+..+--.++..+.-.|.. + +..++- .. +.+.| -.
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 5421 224677777777655 3455544333333333334432 1 222222 11 11222 23
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCc
Q 047840 333 GDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDF 369 (445)
Q Consensus 333 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 369 (445)
.|-..+.+++.++.-.|+.++|.+.++++....|+..
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 4556677888999999999999999999999887643
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0014 Score=58.82 Aligned_cols=98 Identities=10% Similarity=-0.084 Sum_probs=54.5
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCC-H---HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHH
Q 047840 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGD-A---NVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVL 374 (445)
Q Consensus 299 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 374 (445)
+...++.+..+|...|++++|+..|++.++.+ |+ . .+|..+..+|...|+.++|+..++++++..+. .|..
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~---~f~~ 148 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL---KFST 148 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch---hHHH
Confidence 35556666666777777777777776665443 33 2 34666666777777777777777777665321 1211
Q ss_pred HHH--HHHHcCChHHHHHHHHHHHhcCCc
Q 047840 375 SYN--IYKEAGWDMEANKVRKLISETGMK 401 (445)
Q Consensus 375 l~~--~~~~~g~~~~A~~~~~~m~~~~~~ 401 (445)
+.. .+....+..+..++++.+.+.|..
T Consensus 149 i~~DpdL~plR~~pef~eLlee~rk~G~~ 177 (453)
T PLN03098 149 ILNDPDLAPFRASPEFKELQEEARKGGED 177 (453)
T ss_pred HHhCcchhhhcccHHHHHHHHHHHHhCCc
Confidence 111 122233444556666666665553
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0095 Score=49.07 Aligned_cols=50 Identities=12% Similarity=0.003 Sum_probs=38.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHcCChHHHHH
Q 047840 341 LLSACRIYGKIEVGNRVWRKLAEMGITDF---STHVLSYNIYKEAGWDMEANK 390 (445)
Q Consensus 341 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~ 390 (445)
+...|.+.|.+..|..-++.+++.-|+.+ .+...++.+|.+.|..+.|..
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 56778899999999999999999888744 345678888999999885543
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.061 Score=50.84 Aligned_cols=305 Identities=15% Similarity=0.147 Sum_probs=177.7
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHhccCCC-CCh------------hhHHHHHHHHHcCCChHHHHHHhccCCCCCh
Q 047840 62 FGEDPFVVSSLLEFYSLVHKMGTARALFDKSPD-RDV------------VTWTTMVDGYGKMGDFENARELFEKMPERNA 128 (445)
Q Consensus 62 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 128 (445)
-.|.+..|..+.......-.++-|+..|-+... +.. ..-.+-+.+ --|.+++|++++-.+..+|.
T Consensus 688 dnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drrDL 765 (1189)
T KOG2041|consen 688 DNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRRDL 765 (1189)
T ss_pred cCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchhhh
Confidence 367888898888888777788888888765432 111 111112222 24889999999988877654
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHH
Q 047840 129 VSWSAIMAAYSRISDFKEVLSLFRQMQEV-GMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDM 207 (445)
Q Consensus 129 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 207 (445)
.+..+.+.|+|-.+.++++.--.. +-..-...++.+...++....++.|.++|..-... ...+.+
T Consensus 766 -----Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~~ec 831 (1189)
T KOG2041|consen 766 -----AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQIEC 831 (1189)
T ss_pred -----hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhHHHH
Confidence 356677888988888877542110 00112356788888888888888888888765322 235677
Q ss_pred HHccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHH
Q 047840 208 YSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLF 287 (445)
Q Consensus 208 ~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 287 (445)
+.+..++++-+.+.+.+++ +......+.+++...|.-++|.+.+-+-. .|. ..+..|...++|.+|.++-
T Consensus 832 ly~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~pk-----aAv~tCv~LnQW~~avela 901 (1189)
T KOG2041|consen 832 LYRLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAYLRRS----LPK-----AAVHTCVELNQWGEAVELA 901 (1189)
T ss_pred HHHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHHHhcc----CcH-----HHHHHHHHHHHHHHHHHHH
Confidence 7777777777776666655 44456667778888888888877664331 121 2355677777777777665
Q ss_pred HHhHHhhCCCCChhHH--------------HHHHHHHHhcCChHHHHHHHHHHhcC----CCCCCHH----HHHHHH-HH
Q 047840 288 ENMSAVYGVEPQLEHY--------------ACVVDLLARAGMVEEAEKFIEEKMGG----LGGGDAN----VWGALL-SA 344 (445)
Q Consensus 288 ~~~~~~~~~~~~~~~~--------------~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~----~~~~l~-~~ 344 (445)
+...- |...+. .--|..+.++|++-+|.+++.+|.+. +.++-.. +..+++ .-
T Consensus 902 q~~~l-----~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE~ 976 (1189)
T KOG2041|consen 902 QRFQL-----PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVEN 976 (1189)
T ss_pred Hhccc-----hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHH
Confidence 54431 222221 11244456677777777777766442 3232211 111211 00
Q ss_pred H----------HHcCChHHHHHHHHHHHHhCC--------C--CchhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 047840 345 C----------RIYGKIEVGNRVWRKLAEMGI--------T--DFSTHVLSYNIYKEAGWDMEANKVRKLISE 397 (445)
Q Consensus 345 ~----------~~~g~~~~a~~~~~~~~~~~~--------~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 397 (445)
+ -..|..++|..+++...-... . ....+..|+.-....|..+.|...--.+++
T Consensus 977 h~~~ik~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Tal~L~D 1049 (1189)
T KOG2041|consen 977 HRQTIKELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDALQTALILSD 1049 (1189)
T ss_pred HHHHHHHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHHhhhcc
Confidence 0 123555566554444322110 0 122333455556667888888876555553
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00063 Score=40.00 Aligned_cols=42 Identities=21% Similarity=0.253 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 047840 336 NVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYN 377 (445)
Q Consensus 336 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 377 (445)
.+|..+..+|...|++++|+++|+++++..|+++..+..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 457788899999999999999999999999998888877654
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.12 Score=45.57 Aligned_cols=105 Identities=14% Similarity=0.101 Sum_probs=60.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHH
Q 047840 232 WNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLA 311 (445)
Q Consensus 232 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 311 (445)
.+.-+.-+...|+...|.++-++. + -|+..-|...+.+++..++|++-..+-.. +-++..|..++.+|.
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s-------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS-------KKSPIGYEPFVEACL 248 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-------CCCCCChHHHHHHHH
Confidence 334445555666666666554443 1 25666666667777777777655554321 123456666777777
Q ss_pred hcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 047840 312 RAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRV 357 (445)
Q Consensus 312 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 357 (445)
+.|+..+|..++.++ + +..-+..|.+.|++.+|.+.
T Consensus 249 ~~~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HCCCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHH
Confidence 777777777666653 1 13345556666666666544
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.13 Score=45.43 Aligned_cols=113 Identities=15% Similarity=0.159 Sum_probs=87.5
Q ss_pred HHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 047840 264 ETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLS 343 (445)
Q Consensus 264 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 343 (445)
..+.+..+.-+...|+...|.++-.+.. -|+..-|-..+.+++..++|++-.++-.. +.++..|..++.
T Consensus 177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~Fk-----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~ 245 (319)
T PF04840_consen 177 GLSLNDTIRKLIEMGQEKQAEKLKKEFK-----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVE 245 (319)
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHHHcC-----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHH
Confidence 3455666777778888888777765553 48888999999999999999988876543 234577999999
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHH
Q 047840 344 ACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLIS 396 (445)
Q Consensus 344 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 396 (445)
+|.+.|+..+|..+..++ .+..-+..|.+.|++.+|.+.--+.+
T Consensus 246 ~~~~~~~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 246 ACLKYGNKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred HHHHCCCHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 999999999999888872 23567788999999999988655443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0055 Score=49.27 Aligned_cols=104 Identities=14% Similarity=0.065 Sum_probs=65.5
Q ss_pred CCChhhHHHHHHHHHh-----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCCh
Q 047840 226 NKDAGAWNAMISGVAM-----NGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300 (445)
Q Consensus 226 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 300 (445)
..+..+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.|+..+=+ |.+- -..+|+.+-
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F--------- 112 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEF--------- 112 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHh---------
Confidence 3456666666666654 35666666777788888888888888888877665 2211 011111111
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcC
Q 047840 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYG 349 (445)
Q Consensus 301 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 349 (445)
.-| -.+-+-|++++++|...|+-||..++..+++.+.+.+
T Consensus 113 -------~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 113 -------MHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred -------ccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 111 1234567888888888888888888888888875544
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0011 Score=44.94 Aligned_cols=61 Identities=18% Similarity=0.101 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHh----CCC---CchhHHHHHHHHHHcCChHHHHHHHHHHH
Q 047840 336 NVWGALLSACRIYGKIEVGNRVWRKLAEM----GIT---DFSTHVLSYNIYKEAGWDMEANKVRKLIS 396 (445)
Q Consensus 336 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 396 (445)
.+++.+...|...|++++|+..|+++++. +++ -..++..++.+|...|++++|.+.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45666666667777777777777766652 221 13455566777777777777777666554
|
... |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.13 Score=45.21 Aligned_cols=284 Identities=15% Similarity=0.103 Sum_probs=178.5
Q ss_pred HHHHHHHHH--cCCChHHHHHHhccCC---CCChhhHHHHHH--HHHhcCCHhHHHHHHHHHHHcCCCCCHHHH----HH
Q 047840 100 WTTMVDGYG--KMGDFENARELFEKMP---ERNAVSWSAIMA--AYSRISDFKEVLSLFRQMQEVGMKPNESGL----VS 168 (445)
Q Consensus 100 ~~~l~~~~~--~~g~~~~A~~~~~~~~---~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~----~~ 168 (445)
|..|-.+++ -.|+-..|.+.-.+-. ..|....-.++. +-.-.|+++.|.+-|+.|.. |+.|- ..
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGLRg 159 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGLRG 159 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhHHH
Confidence 444444443 3566666766655443 234443333433 34457899999999998875 23332 23
Q ss_pred HHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCC-----CChh--hHHHHHHHH--
Q 047840 169 VLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN-----KDAG--AWNAMISGV-- 239 (445)
Q Consensus 169 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~--~~~~l~~~~-- 239 (445)
|.-...+.|+.+.|.++-+..-..- +.-.....+.+...|..|+|+.|+++++.-.. ++.. .-..|+.+-
T Consensus 160 LyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~ 238 (531)
T COG3898 160 LYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAM 238 (531)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Confidence 3333457788888888887776553 33456778888889999999999999875432 3322 111222211
Q ss_pred -HhcCChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChH
Q 047840 240 -AMNGDAKKSLELFDRMVKSGTQPTETT-FVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVE 317 (445)
Q Consensus 240 -~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 317 (445)
.-..+...|...-.+..+ ..||..- -..-..++.+.|+..++-.+++.+-+. .|.+..+...+ +.+.|+..
T Consensus 239 s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~lY~--~ar~gdta 311 (531)
T COG3898 239 SLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIALLYV--RARSGDTA 311 (531)
T ss_pred HHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHHHHHH--HhcCCCcH
Confidence 112345556655554444 4555432 223345688999999999999999865 67766554333 44556543
Q ss_pred HHHHHHHHH---hcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHc-CChHHHHHHHH
Q 047840 318 EAEKFIEEK---MGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEA-GWDMEANKVRK 393 (445)
Q Consensus 318 ~A~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~ 393 (445)
..-+++. .+.. +.+......+..+-...|++..|..--+.+.+..|. ..+|..|++.-... |+-.++...+.
T Consensus 312 --~dRlkRa~~L~slk-~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlA 387 (531)
T COG3898 312 --LDRLKRAKKLESLK-PNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLA 387 (531)
T ss_pred --HHHHHHHHHHHhcC-ccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHH
Confidence 2222222 2112 456677888888889999999999988888888886 45788888876555 99999988887
Q ss_pred HHHhcCC
Q 047840 394 LISETGM 400 (445)
Q Consensus 394 ~m~~~~~ 400 (445)
+..+.--
T Consensus 388 qav~APr 394 (531)
T COG3898 388 QAVKAPR 394 (531)
T ss_pred HHhcCCC
Confidence 7665433
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00037 Score=38.13 Aligned_cols=33 Identities=21% Similarity=0.145 Sum_probs=30.3
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHcCChHHHHH
Q 047840 358 WRKLAEMGITDFSTHVLSYNIYKEAGWDMEANK 390 (445)
Q Consensus 358 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 390 (445)
|+++++..|+++.+|..++.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 688999999999999999999999999999863
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.16 Score=45.61 Aligned_cols=129 Identities=12% Similarity=0.003 Sum_probs=90.0
Q ss_pred HHHHHHHHHhhcCCcHHHHHHHHHHhHHhhC-CCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 047840 265 TTFVAVLTTCTHAKMVRDGLNLFENMSAVYG-VEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLS 343 (445)
Q Consensus 265 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 343 (445)
..|...+.+..+..-++.|..+|-++.+. + +.+++..+++++..++ .|+..-|..+|+.-...- +.+..--+..+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~-~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f-~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKE-GIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF-PDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhcc-CCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 45666777777777888999999999877 5 6678888899888775 578888999988755433 333444455666
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCC--CchhHHHHHHHHHHcCChHHHHHHHHHHH
Q 047840 344 ACRIYGKIEVGNRVWRKLAEMGIT--DFSTHVLSYNIYKEAGWDMEANKVRKLIS 396 (445)
Q Consensus 344 ~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 396 (445)
-+...++-+.|..+|+..++.-.. -..+|..++.--..-|+...+..+-++|.
T Consensus 475 fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~ 529 (660)
T COG5107 475 FLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFR 529 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHH
Confidence 677788888888888866652222 24467777776677777766665555554
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.011 Score=51.93 Aligned_cols=129 Identities=10% Similarity=0.043 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHH----HcCCC-CchhhhhHHHHHHHccCChHHHHHHhhcCC-------CC--Ch
Q 047840 164 SGLVSVLTACAHLGAITQGLWVHSYAK----RYHLE-KNVILATAVVDMYSKCGHVHSALSVFEGIS-------NK--DA 229 (445)
Q Consensus 164 ~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-------~~--~~ 229 (445)
..|..|.+.|.-.|++++|+...+.-+ +.|.. .....+..+.+++.-.|+++.|.+.|+... .+ ..
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 456666677777888998887665432 33322 123566778888888899998888886532 22 23
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHc----C-CCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHH
Q 047840 230 GAWNAMISGVAMNGDAKKSLELFDRMVKS----G-TQPTETTFVAVLTTCTHAKMVRDGLNLFENMSA 292 (445)
Q Consensus 230 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (445)
.+...|...|.-..++++|+.++.+-..- + ..-....+.+|..++...|..++|..+.+...+
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 35556777777777888888877653321 1 122456777888888888888888877766554
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.16 Score=47.74 Aligned_cols=109 Identities=11% Similarity=0.128 Sum_probs=69.4
Q ss_pred HccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHH
Q 047840 209 SKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFE 288 (445)
Q Consensus 209 ~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 288 (445)
...|-.+-+.++-+++...+..+...+...+.+...+.-|-++|.+|-+. ..++......++|.+|+.+-+
T Consensus 727 ~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe 797 (1081)
T KOG1538|consen 727 GDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAE 797 (1081)
T ss_pred hcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhh
Confidence 34444555555555555556666666666666677777888888877432 245667778888888888877
Q ss_pred HhHHhhCCCCChhH-----------HHHHHHHHHhcCChHHHHHHHHHHhcC
Q 047840 289 NMSAVYGVEPQLEH-----------YACVVDLLARAGMVEEAEKFIEEKMGG 329 (445)
Q Consensus 289 ~~~~~~~~~~~~~~-----------~~~l~~~~~~~g~~~~A~~~~~~~~~~ 329 (445)
..- .+.|++.. +.-.-.+|.++|+-.+|..+++++...
T Consensus 798 ~hP---e~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 798 KHP---EFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hCc---cccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 665 33444321 222334677788888888888877443
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.038 Score=50.12 Aligned_cols=116 Identities=9% Similarity=0.016 Sum_probs=77.6
Q ss_pred cHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHHh---------cCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHc
Q 047840 279 MVRDGLNLFENMSAVYGVEPQ-LEHYACVVDLLAR---------AGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIY 348 (445)
Q Consensus 279 ~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 348 (445)
..+.|..+|.+......+.|+ ...|..+..++.. .....+|.++-++..+.+ +.|+.....+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 345666677777633344554 3334433333221 223456666777777766 67777777777777777
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHH
Q 047840 349 GKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLI 395 (445)
Q Consensus 349 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 395 (445)
++++.|...|+++..+.|+.+.++...+....-.|+.++|.+.+++.
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~a 398 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKS 398 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77888888888888888888878888888888888888888877763
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.017 Score=43.02 Aligned_cols=50 Identities=16% Similarity=0.106 Sum_probs=27.0
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcC-CCCCCHHHHHHHHHHH
Q 047840 296 VEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGG-LGGGDANVWGALLSAC 345 (445)
Q Consensus 296 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~ 345 (445)
..|+..+..+++.+|+..|++..|.++++...+. +++.+..+|..|+.-+
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3455555555555555555555555555554433 4444555555555443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.21 Score=41.12 Aligned_cols=60 Identities=10% Similarity=0.072 Sum_probs=36.0
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHccCChhHHHHHHHHHHHc
Q 047840 133 AIMAAYSRISDFKEVLSLFRQMQEVGMK--PNESGLVSVLTACAHLGAITQGLWVHSYAKRY 192 (445)
Q Consensus 133 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 192 (445)
.....+...|++++|.+.|+.+...-.. --......++.++.+.|+++.|...+++..+.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445566777777777777777654211 12234455666677777777777777776654
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.02 Score=51.72 Aligned_cols=99 Identities=13% Similarity=0.066 Sum_probs=65.8
Q ss_pred CCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCCh----hHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHH
Q 047840 262 PTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL----EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANV 337 (445)
Q Consensus 262 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 337 (445)
.+...++.+..+|.+.|++++|...|++..+. .|+. ..|..+..+|...|++++|+..+++.++.+ .+ .
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL---~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~ 145 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALEL---NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---K 145 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---h
Confidence 35667888888888889999999999888854 5663 347888888888999999999998887642 11 1
Q ss_pred HHHHHH--HHHHcCChHHHHHHHHHHHHhCCC
Q 047840 338 WGALLS--ACRIYGKIEVGNRVWRKLAEMGIT 367 (445)
Q Consensus 338 ~~~l~~--~~~~~g~~~~a~~~~~~~~~~~~~ 367 (445)
|..+.. .+....+.++..++++.+...+-.
T Consensus 146 f~~i~~DpdL~plR~~pef~eLlee~rk~G~~ 177 (453)
T PLN03098 146 FSTILNDPDLAPFRASPEFKELQEEARKGGED 177 (453)
T ss_pred HHHHHhCcchhhhcccHHHHHHHHHHHHhCCc
Confidence 211111 111223344666667766665554
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.021 Score=42.54 Aligned_cols=54 Identities=15% Similarity=0.181 Sum_probs=48.9
Q ss_pred CCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHh
Q 047840 259 GTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLAR 312 (445)
Q Consensus 259 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 312 (445)
...|+..+..+++.+|+..+++..|.++.+...+.++++.+...|..|+.-...
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 467999999999999999999999999999999999999899999999875543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.025 Score=41.28 Aligned_cols=89 Identities=20% Similarity=0.149 Sum_probs=49.2
Q ss_pred HHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCC---chhHHHHHHHHHHcCCh
Q 047840 310 LARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMG-ITD---FSTHVLSYNIYKEAGWD 385 (445)
Q Consensus 310 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~---~~~~~~l~~~~~~~g~~ 385 (445)
+...|+++.|++.|.+.+..- +.....||.-.+++.-.|+.++|++-+++++++. +.. ...|..-+..|...|+.
T Consensus 53 laE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 445566666666666555433 3455566666666666666666666666666632 221 11233444455666666
Q ss_pred HHHHHHHHHHHhcC
Q 047840 386 MEANKVRKLISETG 399 (445)
Q Consensus 386 ~~A~~~~~~m~~~~ 399 (445)
+.|..-|....+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 66666665555544
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.06 Score=41.63 Aligned_cols=61 Identities=20% Similarity=0.239 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 047840 302 HYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAE 363 (445)
Q Consensus 302 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 363 (445)
....++..+...|++++|..+++.+.... |.|...|..++.+|...|+...|.+.|+++.+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 45567777888999999999999988777 77888999999999999999999999988765
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0036 Score=42.34 Aligned_cols=64 Identities=19% Similarity=0.193 Sum_probs=44.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHhcC----CC-CCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 047840 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGG----LG-GGD-ANVWGALLSACRIYGKIEVGNRVWRKLAE 363 (445)
Q Consensus 300 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 363 (445)
..+++.+...|...|++++|+..|++.++. |- .|+ ..++..+...+...|++++|++.+++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 345677777788888888888887776532 10 122 45677788888888888888888888765
|
... |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.19 Score=37.01 Aligned_cols=140 Identities=18% Similarity=0.249 Sum_probs=75.9
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHH
Q 047840 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEA 319 (445)
Q Consensus 240 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 319 (445)
.-.|..++..++..+.... .+..-+|-++--....-+-+-..+.++.+-+-+.+. .+|++...
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis--------------~C~NlKrV 75 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS--------------KCGNLKRV 75 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG--------------G-S-THHH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCch--------------hhcchHHH
Confidence 3457777777777777654 234444444444433344444455555554322221 23444444
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 047840 320 EKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETG 399 (445)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 399 (445)
..-+-.+ + .+.......+..+...|+-+.-.+++..+.+.+..+|.....++.+|.+.|+..++.+++++.-+.|
T Consensus 76 i~C~~~~---n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 76 IECYAKR---N--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHT---T-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHh---c--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 4444333 2 3344455566777778888888888888776555567778888888888888888888888888877
Q ss_pred Cc
Q 047840 400 MK 401 (445)
Q Consensus 400 ~~ 401 (445)
++
T Consensus 151 ~k 152 (161)
T PF09205_consen 151 LK 152 (161)
T ss_dssp -H
T ss_pred hH
Confidence 64
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.13 Score=44.36 Aligned_cols=156 Identities=12% Similarity=-0.015 Sum_probs=99.3
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHH----HHHHHhcCCh
Q 047840 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACV----VDLLARAGMV 316 (445)
Q Consensus 241 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~g~~ 316 (445)
..|+..+|-..++++.+. .+.|...+...=.+|...|+...-...++++.. ...|+...|..+ .-++..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 456777777777777665 344555666666677777777777777777764 335555444332 3344567888
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC----CchhHHHHHHHHHHcCChHHHHHHH
Q 047840 317 EEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT----DFSTHVLSYNIYKEAGWDMEANKVR 392 (445)
Q Consensus 317 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~ 392 (445)
++|++.-++..+.+ +.|...-.++...+-..|++.++.++..+-...-.. -..-|-..+-.+...+.++.|+++|
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 88888888877766 667777777777777778888887776665442111 0112334555666677888888877
Q ss_pred HHHHhcCC
Q 047840 393 KLISETGM 400 (445)
Q Consensus 393 ~~m~~~~~ 400 (445)
++-.-..+
T Consensus 271 D~ei~k~l 278 (491)
T KOG2610|consen 271 DREIWKRL 278 (491)
T ss_pred HHHHHHHh
Confidence 76543333
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.093 Score=44.06 Aligned_cols=94 Identities=15% Similarity=0.076 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhcCCCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---CchhHHHH
Q 047840 302 HYACVVDLLARAGMVEEAEKFIEEKMGGLGGG---DANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT---DFSTHVLS 375 (445)
Q Consensus 302 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l 375 (445)
.|+.-++.| ..|++..|..-|...++.. +. .+..+-.|..++...|+++.|..+|..+.+..|. -+..+.-+
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~Y-P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKY-PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcC-CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 344444333 4455666666666655542 11 1122333566666666666666666666664443 33445556
Q ss_pred HHHHHHcCChHHHHHHHHHHHh
Q 047840 376 YNIYKEAGWDMEANKVRKLISE 397 (445)
Q Consensus 376 ~~~~~~~g~~~~A~~~~~~m~~ 397 (445)
+.+..+.|+.++|...|+.+.+
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHH
Confidence 6666666666666666666654
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.14 Score=39.63 Aligned_cols=88 Identities=7% Similarity=-0.059 Sum_probs=70.4
Q ss_pred HhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChH
Q 047840 273 TCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIE 352 (445)
Q Consensus 273 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 352 (445)
-+...|++++|..+|.-+..- + .-+..-+..|..++-..+++++|...|......+ ..|+...-....++...|+.+
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~-d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIY-D-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHh-C-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHH
Confidence 355789999999999988753 2 2345566788888888999999999998876555 456666677888999999999
Q ss_pred HHHHHHHHHHH
Q 047840 353 VGNRVWRKLAE 363 (445)
Q Consensus 353 ~a~~~~~~~~~ 363 (445)
.|...|+.+++
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 99999999888
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.62 Score=41.77 Aligned_cols=166 Identities=8% Similarity=-0.048 Sum_probs=106.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcC---CCCCHHHHHHHHHHhhc---CCcHHHHHHHHHHhHHhhCCCCChhHHH
Q 047840 231 AWNAMISGVAMNGDAKKSLELFDRMVKSG---TQPTETTFVAVLTTCTH---AKMVRDGLNLFENMSAVYGVEPQLEHYA 304 (445)
Q Consensus 231 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~---~~p~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 304 (445)
+...++-+|....+++..+++.+.+.... +.-+...--...-++.+ .|+.++|.+++..+... .-.+++.++.
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-~~~~~~d~~g 221 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-DENPDPDTLG 221 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-cCCCChHHHH
Confidence 34455667999999999999999997751 11122222233445556 89999999999995544 5677888888
Q ss_pred HHHHHHHh---------cCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChH----HHHHHH---HH-HHHhC--
Q 047840 305 CVVDLLAR---------AGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIE----VGNRVW---RK-LAEMG-- 365 (445)
Q Consensus 305 ~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----~a~~~~---~~-~~~~~-- 365 (445)
.+...|.. ....++|...|.+.-+.. ||...--.++..+...|... +..++- .. +.+.+
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~ 299 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL 299 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc
Confidence 88877643 224788999998876443 55544333333333344322 222222 11 11222
Q ss_pred -C-CCchhHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 047840 366 -I-TDFSTHVLSYNIYKEAGWDMEANKVRKLISETG 399 (445)
Q Consensus 366 -~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 399 (445)
+ .+...+..++.+..-.|+.+.|.+..++|.+..
T Consensus 300 ~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 300 EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 2 244455678889999999999999999998763
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.13 Score=38.77 Aligned_cols=19 Identities=11% Similarity=-0.066 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHHHhCCCCc
Q 047840 351 IEVGNRVWRKLAEMGITDF 369 (445)
Q Consensus 351 ~~~a~~~~~~~~~~~~~~~ 369 (445)
...|..-|+++++.-|++.
T Consensus 115 ~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 115 ARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHHHHHHHHHHHCcCCh
Confidence 3456666666666666543
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.34 E-value=1.1 Score=43.27 Aligned_cols=109 Identities=16% Similarity=0.158 Sum_probs=76.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHH
Q 047840 231 AWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLL 310 (445)
Q Consensus 231 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 310 (445)
+.+--+..+...|+..+|.++-.+.+ -||-..|..-+.+++..++|++-+++-+..+ .+.-|..+..+|
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk-------sPIGy~PFVe~c 754 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK-------SPIGYLPFVEAC 754 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC-------CCCCchhHHHHH
Confidence 44445566677788888887766553 4677888888888888888876655543332 256677788888
Q ss_pred HhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 047840 311 ARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359 (445)
Q Consensus 311 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 359 (445)
.+.|+.++|.+++.+. + +.. -...+|.+.|++.+|.++--
T Consensus 755 ~~~~n~~EA~KYiprv---~--~l~----ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 755 LKQGNKDEAKKYIPRV---G--GLQ----EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HhcccHHHHhhhhhcc---C--ChH----HHHHHHHHhccHHHHHHHHH
Confidence 8999999998888776 2 222 45677788888877765543
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.19 Score=40.50 Aligned_cols=152 Identities=16% Similarity=0.116 Sum_probs=88.1
Q ss_pred cCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHH--HHHhcCChHH
Q 047840 242 NGDAKKSLELFDRMVKSGTQPT-ETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVD--LLARAGMVEE 318 (445)
Q Consensus 242 ~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~ 318 (445)
.|-+.-|.--|.+... +.|+ +..||.+.-.+...|+++.|.+.|+...+. .|+- -|..+=+ ++.-.|++.-
T Consensus 78 lGL~~LAR~DftQaLa--i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL---Dp~y-~Ya~lNRgi~~YY~gR~~L 151 (297)
T COG4785 78 LGLRALARNDFSQALA--IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL---DPTY-NYAHLNRGIALYYGGRYKL 151 (297)
T ss_pred hhHHHHHhhhhhhhhh--cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc---CCcc-hHHHhccceeeeecCchHh
Confidence 3444444444444443 4555 457788887888999999999999998853 4542 2222222 2334688888
Q ss_pred HHHHHHHHhcCC-CCCCHHHHHHHHHH--------------HHHcC--------------ChHHHHHHHHHHHHhCCCC-
Q 047840 319 AEKFIEEKMGGL-GGGDANVWGALLSA--------------CRIYG--------------KIEVGNRVWRKLAEMGITD- 368 (445)
Q Consensus 319 A~~~~~~~~~~~-~~~~~~~~~~l~~~--------------~~~~g--------------~~~~a~~~~~~~~~~~~~~- 368 (445)
|.+-+...-... -.|-...|.-+... +.... ++ ....+++++.....++
T Consensus 152 Aq~d~~~fYQ~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgki-S~e~l~~~~~a~a~~n~ 230 (297)
T COG4785 152 AQDDLLAFYQDDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKI-SEETLMERLKADATDNT 230 (297)
T ss_pred hHHHHHHHHhcCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhc-cHHHHHHHHHhhccchH
Confidence 888776665544 12323344433311 11111 11 0112333333322222
Q ss_pred ------chhHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 047840 369 ------FSTHVLSYNIYKEAGWDMEANKVRKLISETGM 400 (445)
Q Consensus 369 ------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 400 (445)
..+|..++.-+...|+.++|..+|+-.....+
T Consensus 231 ~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 231 SLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 34788899999999999999999988766544
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.03 Score=49.48 Aligned_cols=63 Identities=8% Similarity=-0.132 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 336 NVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 336 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
.+++.+..++.+.+++..|++...++++.+|+|..+.+.-+.++...|+++.|+..|+++.+.
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 457778889999999999999999999999999999999999999999999999999999764
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.2 Score=39.13 Aligned_cols=32 Identities=9% Similarity=0.044 Sum_probs=17.6
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHhhhcCCch
Q 047840 16 FCYLDMLDMGFEPNNYTFPPLIKACVILGPLE 47 (445)
Q Consensus 16 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 47 (445)
+.++.+.+.+++|+...+..++..+.+.|++.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~ 46 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFS 46 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Confidence 33444444555666666666666666665554
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.28 Score=41.75 Aligned_cols=122 Identities=11% Similarity=-0.006 Sum_probs=70.5
Q ss_pred HhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChH
Q 047840 273 TCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIE 352 (445)
Q Consensus 273 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 352 (445)
.....|+..+|..+|+..... .+-+......++.+|...|+.+.|..++..+-..--.........-+..+.+.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 345667777777777777753 122344555677777788888888888777632210111111122233344444443
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 047840 353 VGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISE 397 (445)
Q Consensus 353 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 397 (445)
+... +++-...+|+|...-..++..+...|+.++|.+.+-.+.+
T Consensus 221 ~~~~-l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 221 EIQD-LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred CHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3322 2344456777777777788888888888887775544443
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.64 Score=38.84 Aligned_cols=86 Identities=21% Similarity=0.064 Sum_probs=38.8
Q ss_pred HHhcCChHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHH
Q 047840 310 LARAGMVEEAEKFIEEKMGGLGGG-DANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEA 388 (445)
Q Consensus 310 ~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 388 (445)
+...++.+.+...+....... +. ....+..+...+...++.+.+...+.......|.....+..+...+...|.++++
T Consensus 177 ~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (291)
T COG0457 177 LEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEA 255 (291)
T ss_pred HHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHH
Confidence 334445555555554444332 22 2344444444444445555555555555554444333333333333344445555
Q ss_pred HHHHHHHH
Q 047840 389 NKVRKLIS 396 (445)
Q Consensus 389 ~~~~~~m~ 396 (445)
...+....
T Consensus 256 ~~~~~~~~ 263 (291)
T COG0457 256 LEALEKAL 263 (291)
T ss_pred HHHHHHHH
Confidence 54444443
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.2 Score=38.36 Aligned_cols=127 Identities=16% Similarity=0.179 Sum_probs=73.0
Q ss_pred HHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHHcCCC
Q 047840 33 FPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112 (445)
Q Consensus 33 ~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~ 112 (445)
...++..+...+... ....+++.+...+ ..+...++.++..|++.+ ..+....++. ..+.......+..|.+.+.
T Consensus 10 ~~~vv~~~~~~~~~~-~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 10 VSEVVELFEKRNLLE-ELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred HHHHHHHHHhCCcHH-HHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCc
Confidence 445666666556666 6666777666655 356666777777776553 3344444442 2234444556666777777
Q ss_pred hHHHHHHhccCCCCChhhHHHHHHHHHhc-CCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 047840 113 FENARELFEKMPERNAVSWSAIMAAYSRI-SDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH 175 (445)
Q Consensus 113 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 175 (445)
++++..++.++.. |...+..+... ++++.|.+.+.+- .+...|..++..+..
T Consensus 85 ~~~~~~l~~k~~~-----~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l~ 137 (140)
T smart00299 85 YEEAVELYKKDGN-----FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALLD 137 (140)
T ss_pred HHHHHHHHHhhcC-----HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHHc
Confidence 7777777776643 22233333333 6777777766541 255566666665543
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.81 Score=43.17 Aligned_cols=164 Identities=16% Similarity=0.073 Sum_probs=106.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCH-----HHHHHHHHHhhc----CCcHHHHHHHHHHhHHhhCCCCChh
Q 047840 232 WNAMISGVAMNGDAKKSLELFDRMVKSG-TQPTE-----TTFVAVLTTCTH----AKMVRDGLNLFENMSAVYGVEPQLE 301 (445)
Q Consensus 232 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~-----~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 301 (445)
...+++...=.|+-+.+++.+.+..+.+ +.-.. -.|..++..++. ..+.+.|.++++.+.+. -|+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcH
Confidence 3444555555677777777776655432 22111 123344433332 45778899999999875 57766
Q ss_pred HHHHH-HHHHHhcCChHHHHHHHHHHhcCC--C-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHH-HHH
Q 047840 302 HYACV-VDLLARAGMVEEAEKFIEEKMGGL--G-GGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHV-LSY 376 (445)
Q Consensus 302 ~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~--~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~l~ 376 (445)
.|... .+.+...|++++|.+.|++..... . +.....+--+...+....++++|.+.|.++.+...-+...|. ..+
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a 347 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 66543 456677899999999999765321 1 122344555666778889999999999999986554444444 345
Q ss_pred HHHHHcCCh-------HHHHHHHHHHHhc
Q 047840 377 NIYKEAGWD-------MEANKVRKLISET 398 (445)
Q Consensus 377 ~~~~~~g~~-------~~A~~~~~~m~~~ 398 (445)
.++...|+. ++|.+++.+....
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 567778888 8888888887654
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.45 Score=35.96 Aligned_cols=60 Identities=18% Similarity=0.004 Sum_probs=37.3
Q ss_pred HHhcCChHHHHHHHHHHhcCC-C-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCc
Q 047840 310 LARAGMVEEAEKFIEEKMGGL-G-GGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDF 369 (445)
Q Consensus 310 ~~~~g~~~~A~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 369 (445)
..+.|++++|.+.|+.+...- . +-....-..++.+|.+.+++++|...+++.+++.|.++
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp 81 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP 81 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Confidence 345677777777777765542 0 12234455566677777777777777777777777643
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.03 E-value=1.1 Score=40.57 Aligned_cols=347 Identities=11% Similarity=0.043 Sum_probs=172.1
Q ss_pred hhcCCchHHHHHHHHHHhc--CCCCC------------cccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCC----CChh
Q 047840 6 MQANFPKLSVFCYLDMLDM--GFEPN------------NYTFPPLIKACVILGPLENFGMFVHAHVVKFGFG----EDPF 67 (445)
Q Consensus 6 ~~~g~~~~A~~~~~~m~~~--~~~p~------------~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~ 67 (445)
-+.+.+.+|++.+...... +..|. -.-=+..+.++...|++. +++.+++.+...=++ -+..
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~-EgR~iLn~i~~~llkrE~~w~~d 168 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFS-EGRAILNRIIERLLKRECEWNSD 168 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcc-hHHHHHHHHHHHHhhhhhcccHH
Confidence 4678888998888877654 32221 111234567788999999 899999888775443 6788
Q ss_pred hHHHHHHHHHhcCCHHHHH--------HHh-------ccCCCCChhhH----------HHHHHHHHcC--CC---hHHHH
Q 047840 68 VVSSLLEFYSLVHKMGTAR--------ALF-------DKSPDRDVVTW----------TTMVDGYGKM--GD---FENAR 117 (445)
Q Consensus 68 ~~~~l~~~~~~~g~~~~a~--------~~~-------~~~~~~~~~~~----------~~l~~~~~~~--g~---~~~A~ 117 (445)
+|+.++-++.++=-++.-. ..+ +++..-+...| ..++.-..-. .+ +=++.
T Consensus 169 ~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l 248 (549)
T PF07079_consen 169 MYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQIL 248 (549)
T ss_pred HHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHH
Confidence 8888776665542222111 111 11111111111 1111100000 00 00111
Q ss_pred HHhccC-CCCC-hhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 047840 118 ELFEKM-PERN-AVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKP----NESGLVSVLTACAHLGAITQGLWVHSYAKR 191 (445)
Q Consensus 118 ~~~~~~-~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 191 (445)
+.+++- ..|+ ......+...+.+ +.+++..+-+.+....+.+ =..+|..++....+.++...|.+.+.-+.-
T Consensus 249 ~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ 326 (549)
T PF07079_consen 249 ENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKI 326 (549)
T ss_pred HHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 111110 0121 1122233333333 4555555544443322211 234677777777888888888877777665
Q ss_pred cCCCCchhhh-------hHHHHHHHcc----CChHHHHHHhhcCCCCChh---hHHHH---HHHHHhcCC-hHHHHHHHH
Q 047840 192 YHLEKNVILA-------TAVVDMYSKC----GHVHSALSVFEGISNKDAG---AWNAM---ISGVAMNGD-AKKSLELFD 253 (445)
Q Consensus 192 ~~~~~~~~~~-------~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~---~~~~l---~~~~~~~~~-~~~a~~~~~ 253 (445)
.. |+..+- ..+.+..+.. -+..+-..+++....-|+. .-..| ..-+.+.|. -++|+++++
T Consensus 327 ld--p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk 404 (549)
T PF07079_consen 327 LD--PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLK 404 (549)
T ss_pred cC--CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 43 222211 1122222211 1223334444444433322 11112 234555665 777888888
Q ss_pred HHHHcCCCCCHHHHHH----HHHHhh---cCCcHHHHHHHHHHhHHhhCCCCC----hhHHHHHHHH--HHhcCChHHHH
Q 047840 254 RMVKSGTQPTETTFVA----VLTTCT---HAKMVRDGLNLFENMSAVYGVEPQ----LEHYACVVDL--LARAGMVEEAE 320 (445)
Q Consensus 254 ~m~~~~~~p~~~~~~~----l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~--~~~~g~~~~A~ 320 (445)
...+-. .-|...-+. +=.+|. ....+.+-..+-+-+... |++|- ...-|.|.++ +...|++.++.
T Consensus 405 ~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~-gl~~i~i~e~eian~LaDAEyLysqgey~kc~ 482 (549)
T PF07079_consen 405 LILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEV-GLTPITISEEEIANFLADAEYLYSQGEYHKCY 482 (549)
T ss_pred HHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc-CCCcccccHHHHHHHHHHHHHHHhcccHHHHH
Confidence 776631 112222221 112222 223445555554444444 77663 3444555443 45678888877
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 047840 321 KFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKL 361 (445)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 361 (445)
-.-.-+. .+.|++.+|.-++-++....++++|..++..+
T Consensus 483 ~ys~WL~--~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 483 LYSSWLT--KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHH--HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 6554444 34678888888887778888888887777664
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.25 Score=39.30 Aligned_cols=124 Identities=9% Similarity=-0.042 Sum_probs=83.9
Q ss_pred HhhcCCcHHHHHHHHHHhHHhhCCCCCh-----hHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 047840 273 TCTHAKMVRDGLNLFENMSAVYGVEPQL-----EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRI 347 (445)
Q Consensus 273 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 347 (445)
-+...|++++|..-|...... +++.. ..|..-..++.+.+.++.|+.-..+.++.+ +........-..+|.+
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEK 180 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHh
Confidence 356788999999988888863 33332 334444556778889999999888887766 4455555666678889
Q ss_pred cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHH--HHHHHHHhcC
Q 047840 348 YGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEAN--KVRKLISETG 399 (445)
Q Consensus 348 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~--~~~~~m~~~~ 399 (445)
..++++|++-|+++.+.+|....+-...++.=-......+++ +++.++++.|
T Consensus 181 ~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEkmKee~m~kLKdlG 234 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESDPSRREAREAIARLPPKINERNEKMKEEMMEKLKDLG 234 (271)
T ss_pred hhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999975555444444332333333333 3555665554
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.88 Score=37.97 Aligned_cols=223 Identities=17% Similarity=0.126 Sum_probs=136.7
Q ss_pred CCHhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHccCChhHHHHHHHHHHHc-CCCCchhhhhHHHHHHHccCChHHHHH
Q 047840 142 SDFKEVLSLFRQMQEVGMK-PNESGLVSVLTACAHLGAITQGLWVHSYAKRY-HLEKNVILATAVVDMYSKCGHVHSALS 219 (445)
Q Consensus 142 ~~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~ 219 (445)
+....+...+......... .....+......+...+++..+...+...... ........+......+...+++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444444444444332211 12345555555556666666666555555442 223344445555555566666666666
Q ss_pred HhhcCCCC--C-hhhHHHHHH-HHHhcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHh
Q 047840 220 VFEGISNK--D-AGAWNAMIS-GVAMNGDAKKSLELFDRMVKSGT--QPTETTFVAVLTTCTHAKMVRDGLNLFENMSAV 293 (445)
Q Consensus 220 ~~~~~~~~--~-~~~~~~l~~-~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (445)
.+...... + ......... .+...|+++.+...+.+...... ......+......+...++.+.+...+......
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 196 (291)
T COG0457 117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL 196 (291)
T ss_pred HHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh
Confidence 66655442 1 122222233 67788889999988888855221 123334444444466778899999999988853
Q ss_pred hCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 047840 294 YGVEP-QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT 367 (445)
Q Consensus 294 ~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 367 (445)
... ....+..+...+...++++.|...+....... +.....+..+...+...+..+.+...+.+.....|.
T Consensus 197 --~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 197 --NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD-PDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred --CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC-cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 233 36677788888888889999999999887654 223455555555566777799999999999988876
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.17 Score=43.65 Aligned_cols=119 Identities=9% Similarity=-0.037 Sum_probs=96.3
Q ss_pred cCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcC---CCCCCHHHHHHHHHHHHHcCChH
Q 047840 276 HAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGG---LGGGDANVWGALLSACRIYGKIE 352 (445)
Q Consensus 276 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~ 352 (445)
..|+..+|...++++.+ ..+.|...++..-++|...|+.+.-...++++... ++|.....-..+.-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~--d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLD--DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHH--hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 45788888888999987 55777888888888999999999999999988755 22222333344455667889999
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHH
Q 047840 353 VGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLIS 396 (445)
Q Consensus 353 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 396 (445)
+|++.-++..+..+.|.-+....+..+.-.|++.++.++..+-.
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~te 236 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTE 236 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcc
Confidence 99999999999999998888899999999999999999887654
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.97 Score=42.07 Aligned_cols=133 Identities=10% Similarity=0.072 Sum_probs=82.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHHcCCChHHHHHHhccCCCCChhhHHHHHHHHHhcCCHh
Q 047840 66 PFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFK 145 (445)
Q Consensus 66 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 145 (445)
....+.++..+.+.|-.+.|.++-.. + ..-.....+.|+.+.|.++.+... +...|..|.....+.|+++
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~D-----~---~~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~ 364 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVTD-----P---DHRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIE 364 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS------H---HHHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcCC-----h---HHHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHH
Confidence 34467777777788888888777322 1 233444567788888877777665 5567888888888888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhc
Q 047840 146 EVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEG 223 (445)
Q Consensus 146 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 223 (445)
-|.+.|++..+ +..|+-.|...|+.+...++.+.....|. ++....++.-.|+.+++.+++.+
T Consensus 365 lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 365 LAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888776432 44556666677777777777666666551 33344445555666666655543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.042 Score=29.79 Aligned_cols=33 Identities=21% Similarity=0.242 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 047840 336 NVWGALLSACRIYGKIEVGNRVWRKLAEMGITD 368 (445)
Q Consensus 336 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 368 (445)
..|..+...+...|++++|++.|+++++..|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 356667777777777777777777777777753
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.73 E-value=1.4 Score=39.23 Aligned_cols=275 Identities=15% Similarity=0.112 Sum_probs=145.4
Q ss_pred cCCHHHHHHHhccC---CCCChhhHHHHHHHH--HcCCChHHHHHHhccCCC-CChh--hHHHHHHHHHhcCCHhHHHHH
Q 047840 79 VHKMGTARALFDKS---PDRDVVTWTTMVDGY--GKMGDFENARELFEKMPE-RNAV--SWSAIMAAYSRISDFKEVLSL 150 (445)
Q Consensus 79 ~g~~~~a~~~~~~~---~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~-~~~~--~~~~l~~~~~~~~~~~~a~~~ 150 (445)
.||-..|.++-.+. ...|......++.+- .-.|+++.|.+-|+.|.. |... -...|.-.-.+.|..+.|..+
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~y 176 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHY 176 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHH
Confidence 45555665554432 234555555554433 235677777777776654 2211 122233333455666666666
Q ss_pred HHHHHHcCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHcC-CCCchh--hhhHHHHHH---HccCChHHHHHHhhc
Q 047840 151 FRQMQEVGMKP-NESGLVSVLTACAHLGAITQGLWVHSYAKRYH-LEKNVI--LATAVVDMY---SKCGHVHSALSVFEG 223 (445)
Q Consensus 151 ~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~--~~~~l~~~~---~~~g~~~~a~~~~~~ 223 (445)
-+..-.. .| =.......+...+..|+++.|+++.+.-+... +.++.. .-..|+.+- .-.-+...|...-.+
T Consensus 177 Ae~Aa~~--Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~ 254 (531)
T COG3898 177 AERAAEK--APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALE 254 (531)
T ss_pred HHHHHhh--ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 5555432 22 24455666666677777777777666655432 222221 111111111 111234444444333
Q ss_pred CCC--CChh-hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCC-
Q 047840 224 ISN--KDAG-AWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ- 299 (445)
Q Consensus 224 ~~~--~~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~- 299 (445)
..+ ||.. .--.-..++.+.|+..++-.+++.+-+....|+.. ..|.+...-+.+..-+++..+...++||
T Consensus 255 a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia------~lY~~ar~gdta~dRlkRa~~L~slk~nn 328 (531)
T COG3898 255 ANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA------LLYVRARSGDTALDRLKRAKKLESLKPNN 328 (531)
T ss_pred HhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH------HHHHHhcCCCcHHHHHHHHHHHHhcCccc
Confidence 322 2322 22333466778888888888888887765555432 2233222233444445555444455665
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH-HcCChHHHHHHHHHHHH
Q 047840 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACR-IYGKIEVGNRVWRKLAE 363 (445)
Q Consensus 300 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~ 363 (445)
......+..+....|++..|..--+...+ ..|....|..|.+.-. ..|+-.++...+-+.++
T Consensus 329 aes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 329 AESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred hHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 34445566677777888777766555542 3577777777776654 34888888888777776
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.039 Score=32.25 Aligned_cols=40 Identities=23% Similarity=0.399 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 047840 302 HYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALL 342 (445)
Q Consensus 302 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 342 (445)
++..+..+|.+.|++++|+++|+++++.. +.|...|..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHHHhh
Confidence 45667777888888888888888877765 55666665554
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.032 Score=30.35 Aligned_cols=32 Identities=16% Similarity=0.135 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 047840 336 NVWGALLSACRIYGKIEVGNRVWRKLAEMGIT 367 (445)
Q Consensus 336 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 367 (445)
.+|..+..++...|++++|+..|+++++.+|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45677777788888888888888888877775
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.68 Score=39.05 Aligned_cols=103 Identities=10% Similarity=0.017 Sum_probs=68.8
Q ss_pred HHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCC---hhHHHHHHHHHHhcCChHHHHHHHHHHhcCC-C-CCCHHHHHH
Q 047840 266 TFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ---LEHYACVVDLLARAGMVEEAEKFIEEKMGGL-G-GGDANVWGA 340 (445)
Q Consensus 266 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~-~~~~~~~~~ 340 (445)
.|+.-+..+ +.|++..|..-|....+. .+-+ ...+-.|..++...|++++|..+|..+.+.- - +.-+..+.-
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~--YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKK--YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHc--CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 455555444 446688888888777764 2222 2233457778888888888888887776542 1 123466777
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCchh
Q 047840 341 LLSACRIYGKIEVGNRVWRKLAEMGITDFST 371 (445)
Q Consensus 341 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 371 (445)
|.....+.|+.++|...|+++.+.-|..+.+
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 7777888888888888888888888875544
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=95.59 E-value=2.6 Score=41.48 Aligned_cols=117 Identities=10% Similarity=0.034 Sum_probs=70.2
Q ss_pred CcHHHHHHHHHHhHHhhCCCCCh--hHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHH
Q 047840 278 KMVRDGLNLFENMSAVYGVEPQL--EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGN 355 (445)
Q Consensus 278 ~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 355 (445)
.+.+.|...+.......++.+.. ..+..+.......+..++|...++...... .+......-+......++++.+.
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~ 332 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLN 332 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHH
Confidence 45577888887765543333332 223333333333322566777776653222 24444455555555778888777
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHH
Q 047840 356 RVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLIS 396 (445)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 396 (445)
..+..|-...........-+++++...|+.++|...|+.+.
T Consensus 333 ~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 333 TWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 77777655444456667778888777888888888887764
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.14 Score=42.97 Aligned_cols=89 Identities=11% Similarity=0.144 Sum_probs=60.0
Q ss_pred CChhhHHHHHHHHHh-----cCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC----------------ChhHHHH
Q 047840 126 RNAVSWSAIMAAYSR-----ISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLG----------------AITQGLW 184 (445)
Q Consensus 126 ~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~----------------~~~~a~~ 184 (445)
+|-.+|-..+..+.. .+..+-....++.|.+-|+.-|..+|..|++.+-+.. +-+-++.
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~ 144 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIK 144 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHH
Confidence 444555554444432 2445555555666777777777777777776654322 3455778
Q ss_pred HHHHHHHcCCCCchhhhhHHHHHHHccCCh
Q 047840 185 VHSYAKRYHLEKNVILATAVVDMYSKCGHV 214 (445)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 214 (445)
++++|...|+.||..+-..|++++.+.+-.
T Consensus 145 vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 145 VLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 899999999999988888888888887754
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.4 Score=37.24 Aligned_cols=123 Identities=17% Similarity=0.162 Sum_probs=56.8
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChh-HHHHHH--HHHHhcCC
Q 047840 240 AMNGDAKKSLELFDRMVKSGTQPTET-TFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLE-HYACVV--DLLARAGM 315 (445)
Q Consensus 240 ~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~--~~~~~~g~ 315 (445)
.+.+..++|+.-|..+.+.|...-+. ............|+...|...|+++-.. .-.|-.. -..-|= -.+...|.
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d-t~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD-TSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc-CCCcchhhHHHHHHHHHHHhcccc
Confidence 34455566666666665554321111 0011112244556666666666666543 1112111 111111 12345566
Q ss_pred hHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 047840 316 VEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAE 363 (445)
Q Consensus 316 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 363 (445)
++....-.+.+...+-+--...-..|.-+-.+.|++..|.+.|..+..
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 666666655554333222333444555555566666666666666655
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.47 E-value=1.9 Score=39.14 Aligned_cols=133 Identities=14% Similarity=0.156 Sum_probs=106.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHH-HHHHH
Q 047840 231 AWNAMISGVAMNGDAKKSLELFDRMVKSG-TQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHY-ACVVD 308 (445)
Q Consensus 231 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~~ 308 (445)
+|-..+..-.+....+.|..+|.+..+.| +.++...+++++..++. |+...|..+|+.-... -||...| .-.+.
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~---f~d~~~y~~kyl~ 474 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK---FPDSTLYKEKYLL 474 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh---CCCchHHHHHHHH
Confidence 56667777778888999999999999998 67888899999987765 8889999999887754 3454444 45667
Q ss_pred HHHhcCChHHHHHHHHHHhcCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 047840 309 LLARAGMVEEAEKFIEEKMGGLGGGD--ANVWGALLSACRIYGKIEVGNRVWRKLAEMGITD 368 (445)
Q Consensus 309 ~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 368 (445)
.+.+.++-+.|..+|+..+..- ..+ ..+|..++.--...|+...+..+-+++.+.-|..
T Consensus 475 fLi~inde~naraLFetsv~r~-~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 475 FLIRINDEENARALFETSVERL-EKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHH-HHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 7788999999999999654321 233 5679999998899999999999999999988863
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.011 Score=45.65 Aligned_cols=85 Identities=20% Similarity=0.135 Sum_probs=50.1
Q ss_pred HHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHHcCCChHH
Q 047840 36 LIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFEN 115 (445)
Q Consensus 36 ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 115 (445)
++..+.+.+... ....+++.+...+...+...++.++..|++.++.+...++++.... .....++..|.+.|.+++
T Consensus 13 vi~~~~~~~~~~-~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 13 VISAFEERNQPE-ELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CHHHCTTTT-GG-GCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHhCCCHH-HHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 455566666666 6666677666655555666677777777777666777766663222 333445555555666666
Q ss_pred HHHHhccCC
Q 047840 116 ARELFEKMP 124 (445)
Q Consensus 116 A~~~~~~~~ 124 (445)
|.-++.++.
T Consensus 89 a~~Ly~~~~ 97 (143)
T PF00637_consen 89 AVYLYSKLG 97 (143)
T ss_dssp HHHHHHCCT
T ss_pred HHHHHHHcc
Confidence 666555544
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.94 Score=42.15 Aligned_cols=159 Identities=15% Similarity=0.147 Sum_probs=87.9
Q ss_pred HHHHhcCCHhHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCCh
Q 047840 136 AAYSRISDFKEVLSLFRQM-QEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHV 214 (445)
Q Consensus 136 ~~~~~~~~~~~a~~~~~~~-~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 214 (445)
....-.++++.+.+....- .-..+ +..-...++..+.+.|..+.|.++-.+-. .-.+...+.|++
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L 334 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNL 334 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-H
T ss_pred HHHHHcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCH
Confidence 4455677788877666411 11112 24446677777777777777776643321 123445677888
Q ss_pred HHHHHHhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhh
Q 047840 215 HSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVY 294 (445)
Q Consensus 215 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (445)
+.|.++.++.. +...|..|.....+.|+.+-|.+.|.+..+ |..++-.|.-.|+.+.-.++.+.....
T Consensus 335 ~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~- 402 (443)
T PF04053_consen 335 DIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER- 402 (443)
T ss_dssp HHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT-
T ss_pred HHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc-
Confidence 88888776665 555788888888888888888877776432 233444455566666666666555543
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHHH
Q 047840 295 GVEPQLEHYACVVDLLARAGMVEEAEKFIEEK 326 (445)
Q Consensus 295 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 326 (445)
| -++....++.-.|+.++..+++.+-
T Consensus 403 ~------~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 403 G------DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp T-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred c------CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 1 2344444555567777777766654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.21 Score=42.07 Aligned_cols=98 Identities=16% Similarity=0.219 Sum_probs=71.7
Q ss_pred HHHHhhcCC--CCChhhHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCC-----------
Q 047840 217 ALSVFEGIS--NKDAGAWNAMISGVAMN-----GDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAK----------- 278 (445)
Q Consensus 217 a~~~~~~~~--~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~----------- 278 (445)
.+..|..+. ++|-.+|.+.+..|... +..+=....++.|.+-|+.-|..+|+.|+..+-+-.
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 445566665 46777888888877653 556666777888999999999999999998775532
Q ss_pred -----cHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCC
Q 047840 279 -----MVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGM 315 (445)
Q Consensus 279 -----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 315 (445)
+-+-+++++++|... |+.||..+-..|+.++.+.+-
T Consensus 133 ~HYP~QQ~C~I~vLeqME~h-GVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWH-GVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hhCchhhhHHHHHHHHHHHc-CCCCchHHHHHHHHHhccccc
Confidence 234567778888754 888888887788888777654
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.40 E-value=2.2 Score=43.65 Aligned_cols=117 Identities=18% Similarity=0.162 Sum_probs=75.6
Q ss_pred hhhHHHHHHHccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCc
Q 047840 200 LATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKM 279 (445)
Q Consensus 200 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 279 (445)
.|.-.++.--+.|.+++|..++..-.+.-...|.+....+.....+++|--.|+..-+. .-.+.+|...|+
T Consensus 910 ~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~d 980 (1265)
T KOG1920|consen 910 YFPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGD 980 (1265)
T ss_pred ccHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhcc
Confidence 44445555566667777776665444444446666667777778888888777654221 124667778889
Q ss_pred HHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHh
Q 047840 280 VRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKM 327 (445)
Q Consensus 280 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 327 (445)
|.+|..+..++.. +-.--..+-..|+..+...++.-+|-++..+..
T Consensus 981 Wr~~l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 981 WREALSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 9988888877753 111112223567777888888888888888764
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.45 Score=35.04 Aligned_cols=92 Identities=16% Similarity=0.138 Sum_probs=51.7
Q ss_pred hhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHH---HHHHHHHHHHHcCC
Q 047840 274 CTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDAN---VWGALLSACRIYGK 350 (445)
Q Consensus 274 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~ 350 (445)
+...|+++.|++.|.+... -.+-....||.-..++.-.|+.++|++-+++.++..-..... .|..-...|...|+
T Consensus 53 laE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 4455666666666666653 223345566666666666666666666666655442122222 23333344566677
Q ss_pred hHHHHHHHHHHHHhCCC
Q 047840 351 IEVGNRVWRKLAEMGIT 367 (445)
Q Consensus 351 ~~~a~~~~~~~~~~~~~ 367 (445)
.+.|..-|+.+-++|.+
T Consensus 131 dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGSK 147 (175)
T ss_pred hHHHHHhHHHHHHhCCH
Confidence 77777777766666654
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.48 Score=41.48 Aligned_cols=47 Identities=15% Similarity=0.157 Sum_probs=25.6
Q ss_pred HHhcCCHhHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHccCChhHHHH
Q 047840 138 YSRISDFKEVLSLFRQMQEV--GMKPNESGLVSVLTACAHLGAITQGLW 184 (445)
Q Consensus 138 ~~~~~~~~~a~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~ 184 (445)
+....+.++|+..+.+-... +...-..++..+..+.+..|.++++..
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~ 64 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLK 64 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHH
Confidence 44566777777777665442 111122345555566666666655543
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.23 Score=39.48 Aligned_cols=90 Identities=20% Similarity=0.055 Sum_probs=75.6
Q ss_pred HHHHhcCChHHHHHHHHHHhcCCCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHc
Q 047840 308 DLLARAGMVEEAEKFIEEKMGGLGGGD-----ANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEA 382 (445)
Q Consensus 308 ~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 382 (445)
.-+...|++++|..-|.+.++.- ++. ...|..-..++.+.+.++.|+.-..++++++|....+....+.+|.+.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM 181 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence 34678899999999999988764 332 234555567788999999999999999999999888888889999999
Q ss_pred CChHHHHHHHHHHHhc
Q 047840 383 GWDMEANKVRKLISET 398 (445)
Q Consensus 383 g~~~~A~~~~~~m~~~ 398 (445)
.++++|++-++++.+.
T Consensus 182 ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 182 EKYEEALEDYKKILES 197 (271)
T ss_pred hhHHHHHHHHHHHHHh
Confidence 9999999999988764
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.16 E-value=1.7 Score=36.61 Aligned_cols=159 Identities=11% Similarity=0.085 Sum_probs=71.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc---CC--CCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCC----hhH
Q 047840 232 WNAMISGVAMNGDAKKSLELFDRMVKS---GT--QPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ----LEH 302 (445)
Q Consensus 232 ~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~ 302 (445)
...++....+.+++++.++.|+++..- .+ .-+..+.+.++...+...+.+--..+++.-.....-..+ ..|
T Consensus 68 LKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKT 147 (440)
T KOG1464|consen 68 LKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKT 147 (440)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeec
Confidence 344555566666666666666555321 01 123344555555554444444333333322211110111 122
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhcCC----CCCC-------HHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCc
Q 047840 303 YACVVDLLARAGMVEEAEKFIEEKMGGL----GGGD-------ANVWGALLSACRIYGKIEVGNRVWRKLAEM--GITDF 369 (445)
Q Consensus 303 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~ 369 (445)
-..|...|...|.+.+..+++.++.... ...| ..+|..-++.|....+-.+...++++.+.. ..++|
T Consensus 148 NtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHP 227 (440)
T KOG1464|consen 148 NTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHP 227 (440)
T ss_pred cchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCch
Confidence 2345555555666666666665553211 0111 223444455555555555566666665542 22344
Q ss_pred hhHHHHH----HHHHHcCChHHHHH
Q 047840 370 STHVLSY----NIYKEAGWDMEANK 390 (445)
Q Consensus 370 ~~~~~l~----~~~~~~g~~~~A~~ 390 (445)
.+...+- ....+.|+|++|..
T Consensus 228 lImGvIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 228 LIMGVIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred HHHhHHHHcCCccccccchHHHHHh
Confidence 3333222 23445566666554
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.16 E-value=2 Score=37.45 Aligned_cols=161 Identities=10% Similarity=-0.050 Sum_probs=84.1
Q ss_pred hHHHHHHHHHhcCChH---HHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHH
Q 047840 231 AWNAMISGVAMNGDAK---KSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVV 307 (445)
Q Consensus 231 ~~~~l~~~~~~~~~~~---~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 307 (445)
+...++.+|...+..+ +|..+++.+...... ....+..-+..+.+.++.+.+.+++.+|... +.-....+...+
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~--~~~~e~~~~~~l 162 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRS--VDHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHh--cccccchHHHHH
Confidence 4556667777766544 455566666444222 2444445566666688889999999999874 332333444444
Q ss_pred HHH---HhcCChHHHHHHHHHHhcCCCCCCHH-HHHH-HHH-HHH--HcCC------hHHHHHHHHHHHH--hCCCCchh
Q 047840 308 DLL---ARAGMVEEAEKFIEEKMGGLGGGDAN-VWGA-LLS-ACR--IYGK------IEVGNRVWRKLAE--MGITDFST 371 (445)
Q Consensus 308 ~~~---~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~-l~~-~~~--~~g~------~~~a~~~~~~~~~--~~~~~~~~ 371 (445)
..+ .. .....|...++.++...+.|... .... ++. .+. ..++ ++...+++..+.+ .+|-++.+
T Consensus 163 ~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~ 241 (278)
T PF08631_consen 163 HHIKQLAE-KSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEA 241 (278)
T ss_pred HHHHHHHh-hCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 444 33 23455666666655544444443 1111 111 111 1111 3444444553333 22223222
Q ss_pred ---HHHH----HHHHHHcCChHHHHHHHHHH
Q 047840 372 ---HVLS----YNIYKEAGWDMEANKVRKLI 395 (445)
Q Consensus 372 ---~~~l----~~~~~~~g~~~~A~~~~~~m 395 (445)
...+ +..+.+.+++++|.+.++-.
T Consensus 242 ~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 242 ASAIHTLLWNKGKKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 2222 34577789999999988743
|
It is also involved in sporulation []. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.16 Score=43.35 Aligned_cols=63 Identities=16% Similarity=0.228 Sum_probs=45.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 047840 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAE 363 (445)
Q Consensus 300 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 363 (445)
..++..++..+...|+++.+.+.++++.... +-+...|..++.+|...|+...|+..|+++.+
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 4556667777777777777777777777666 56677777777777777777777777777665
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=95.13 E-value=2.4 Score=38.34 Aligned_cols=150 Identities=7% Similarity=-0.043 Sum_probs=78.2
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCC--hhH
Q 047840 228 DAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQP---TETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ--LEH 302 (445)
Q Consensus 228 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~ 302 (445)
...+|..++..+.+.|+++.|...+.++...+..+ ++.....-...+-..|+..+|...++..... .+..+ ...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~~ 223 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhcccccc
Confidence 44567777777888888888888777776643211 2333333445555667777777777777652 11111 111
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHc------CChHHHHHHHHHHHHhCCCCchhHHHHH
Q 047840 303 YACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIY------GKIEVGNRVWRKLAEMGITDFSTHVLSY 376 (445)
Q Consensus 303 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 376 (445)
...+...... ..+.....- ........-..++..+...+... +..+++...|+++.+..|.....+..++
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a 299 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTN--LDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWA 299 (352)
T ss_pred HHHHhhcccc--ccccccccc--hhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHH
Confidence 1111111000 000000000 00000000112334444444444 7788999999999999998777788777
Q ss_pred HHHHHc
Q 047840 377 NIYKEA 382 (445)
Q Consensus 377 ~~~~~~ 382 (445)
..+.+.
T Consensus 300 ~~~~~~ 305 (352)
T PF02259_consen 300 LFNDKL 305 (352)
T ss_pred HHHHHH
Confidence 765554
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.67 Score=43.69 Aligned_cols=145 Identities=17% Similarity=0.081 Sum_probs=98.6
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChh-----HHHHHHHHHHh----cCChHH
Q 047840 248 SLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLE-----HYACVVDLLAR----AGMVEE 318 (445)
Q Consensus 248 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~----~g~~~~ 318 (445)
..-+|.-+..- ++| .+..++....-.|+-+.+++.+....+..++.-... .|...+..++. ....+.
T Consensus 176 G~G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~ 251 (468)
T PF10300_consen 176 GFGLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEE 251 (468)
T ss_pred HHHHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHH
Confidence 34445555443 333 344566667778999999999988876434433222 22222332322 456788
Q ss_pred HHHHHHHHhcCCCCCCHHHHHH-HHHHHHHcCChHHHHHHHHHHHHhCC----CCchhHHHHHHHHHHcCChHHHHHHHH
Q 047840 319 AEKFIEEKMGGLGGGDANVWGA-LLSACRIYGKIEVGNRVWRKLAEMGI----TDFSTHVLSYNIYKEAGWDMEANKVRK 393 (445)
Q Consensus 319 A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~ 393 (445)
|.++++.+...- |+...|.. -.+.+...|++++|++.|+++..... -....+..+++.+.-.++|++|.+.+.
T Consensus 252 a~~lL~~~~~~y--P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~ 329 (468)
T PF10300_consen 252 AEELLEEMLKRY--PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFL 329 (468)
T ss_pred HHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHH
Confidence 999999987543 66655543 34567788999999999998775221 145567789999999999999999999
Q ss_pred HHHhc
Q 047840 394 LISET 398 (445)
Q Consensus 394 ~m~~~ 398 (445)
.+.+.
T Consensus 330 ~L~~~ 334 (468)
T PF10300_consen 330 RLLKE 334 (468)
T ss_pred HHHhc
Confidence 99874
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.11 E-value=2.8 Score=38.82 Aligned_cols=54 Identities=7% Similarity=0.198 Sum_probs=23.6
Q ss_pred HhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHH
Q 047840 273 TCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEK 326 (445)
Q Consensus 273 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 326 (445)
++.+.|+.++|.+.++++.+.+....+......|+.++...+.+.++..++.+-
T Consensus 268 CarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 268 CARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 334445555555555554433111112223344445555555555555555444
|
The molecular function of this protein is uncertain. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.10 E-value=2.2 Score=39.17 Aligned_cols=160 Identities=12% Similarity=0.064 Sum_probs=102.8
Q ss_pred hhH--HHHHHHHHhc-----CChHHHHHHHHHHHHc-CCCCCH-HHHHHHHHHhh---------cCCcHHHHHHHHHHhH
Q 047840 230 GAW--NAMISGVAMN-----GDAKKSLELFDRMVKS-GTQPTE-TTFVAVLTTCT---------HAKMVRDGLNLFENMS 291 (445)
Q Consensus 230 ~~~--~~l~~~~~~~-----~~~~~a~~~~~~m~~~-~~~p~~-~~~~~l~~~~~---------~~~~~~~a~~~~~~~~ 291 (445)
..| ...+.+.... ...+.|+.+|.+.... ...|+- ..|..+..++. ...+..+|.++-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 456 5555554431 2356788888888722 234443 33333322221 1234556666777666
Q ss_pred HhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchh
Q 047840 292 AVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFST 371 (445)
Q Consensus 292 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 371 (445)
+. -+.|......+..+..-.++++.|...|++....+ +....+|-.....+.-.|+.++|.+.+++..++.|....+
T Consensus 332 el--d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 332 DI--TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred hc--CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 53 24456666677777788888999999999998776 5556777777777888999999999999999999974333
Q ss_pred --HHHHHHHHHHcCChHHHHHHHH
Q 047840 372 --HVLSYNIYKEAGWDMEANKVRK 393 (445)
Q Consensus 372 --~~~l~~~~~~~g~~~~A~~~~~ 393 (445)
....++.|+.. ..++|.+++-
T Consensus 409 ~~~~~~~~~~~~~-~~~~~~~~~~ 431 (458)
T PRK11906 409 VVIKECVDMYVPN-PLKNNIKLYY 431 (458)
T ss_pred HHHHHHHHHHcCC-chhhhHHHHh
Confidence 22333355554 4566776554
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.09 E-value=1.6 Score=36.14 Aligned_cols=206 Identities=16% Similarity=0.153 Sum_probs=105.3
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHH
Q 047840 130 SWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYS 209 (445)
Q Consensus 130 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 209 (445)
.|..-..+|...+++++|...+.+..+. ..-+...|+ .....++|.-+.+++.+. +.-+..|+.....|.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHH
Confidence 4555666777788888887776665431 111221221 122344555555555443 223345566666777
Q ss_pred ccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc---CC--CCCHHHHHHHHHHhhcCCcHHHHH
Q 047840 210 KCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKS---GT--QPTETTFVAVLTTCTHAKMVRDGL 284 (445)
Q Consensus 210 ~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~--~p~~~~~~~l~~~~~~~~~~~~a~ 284 (445)
.+|.++.|-..+++.-+ ....-++++|+++|++...- +- +.-...+..+-..+.+...+++|-
T Consensus 103 E~GspdtAAmaleKAak------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa 170 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAAK------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAA 170 (308)
T ss_pred HhCCcchHHHHHHHHHH------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHH
Confidence 77777766655554311 22344566666666654321 10 011122333444455666666655
Q ss_pred HHHHHhHHh---hCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHHHhcC---CCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 047840 285 NLFENMSAV---YGVEPQ-LEHYACVVDLLARAGMVEEAEKFIEEKMGG---LGGGDANVWGALLSACRIYGKIEVGNRV 357 (445)
Q Consensus 285 ~~~~~~~~~---~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 357 (445)
..+.+-... +.--++ -..|-..|-.+.-..++..|...++.--+. .-+.+..+...|+.+| ..|+.+++..+
T Consensus 171 ~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 171 TAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKV 249 (308)
T ss_pred HHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHH
Confidence 444332210 000111 122444445555667888888888773322 2234566777788777 45677766555
Q ss_pred H
Q 047840 358 W 358 (445)
Q Consensus 358 ~ 358 (445)
+
T Consensus 250 l 250 (308)
T KOG1585|consen 250 L 250 (308)
T ss_pred H
Confidence 4
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.88 E-value=1.3 Score=40.87 Aligned_cols=56 Identities=11% Similarity=0.060 Sum_probs=26.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCC--CchhHHHHHHHHHHcCChHHHHHHHHHH
Q 047840 340 ALLSACRIYGKIEVGNRVWRKLAEMGIT--DFSTHVLSYNIYKEAGWDMEANKVRKLI 395 (445)
Q Consensus 340 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m 395 (445)
.+..++.+.|+.++|++.++++.+..|. +..+...|+.++...+.+.++..++.+-
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 3444444445555555555555443332 2333444455555555555555544443
|
The molecular function of this protein is uncertain. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.77 E-value=2.4 Score=36.39 Aligned_cols=167 Identities=10% Similarity=0.060 Sum_probs=100.5
Q ss_pred HHHHHhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhC
Q 047840 216 SALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG 295 (445)
Q Consensus 216 ~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 295 (445)
...++++++..+....-..-.......|++.+|..+|+........ +...-..+..+|...|+.+.|..++..+-.. -
T Consensus 121 qlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~ 198 (304)
T COG3118 121 QLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQ-A 198 (304)
T ss_pred HHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCccc-c
Confidence 3344444444432222222233456678888888888887765332 3455566777888888888888888877643 1
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC--CCchhHH
Q 047840 296 VEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI--TDFSTHV 373 (445)
Q Consensus 296 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~ 373 (445)
-.........-+..+.+.....+...+-++... . +-|...-..+...+...|+.+.|.+.+-.+++.+. .+...-.
T Consensus 199 ~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aa-d-Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk 276 (304)
T COG3118 199 QDKAAHGLQAQIELLEQAAATPEIQDLQRRLAA-D-PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARK 276 (304)
T ss_pred hhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh-C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHH
Confidence 111112222334445555555544444444422 2 34777777788888888888888888777776443 4666777
Q ss_pred HHHHHHHHcCChH
Q 047840 374 LSYNIYKEAGWDM 386 (445)
Q Consensus 374 ~l~~~~~~~g~~~ 386 (445)
.++..+.-.|.-+
T Consensus 277 ~lle~f~~~g~~D 289 (304)
T COG3118 277 TLLELFEAFGPAD 289 (304)
T ss_pred HHHHHHHhcCCCC
Confidence 7777777777433
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=94.76 E-value=4.9 Score=39.99 Aligned_cols=219 Identities=9% Similarity=-0.032 Sum_probs=112.5
Q ss_pred HHccCChhHHHHHHHHHHHcCCCCchh-------hhhHHH-HHHHccCChHHHHHHhhcCCC--------CChhhHHHHH
Q 047840 173 CAHLGAITQGLWVHSYAKRYHLEKNVI-------LATAVV-DMYSKCGHVHSALSVFEGISN--------KDAGAWNAMI 236 (445)
Q Consensus 173 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~-~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~l~ 236 (445)
.....++++|..++.++...-..|+.. .++++- ......|+++.|.++.+.... +....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 345667777777777766543232221 222221 123456778888777654332 2556677777
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHH---HHHHH--HhhcCCc--HHHHHHHHHHhHHhhCCCC-----ChhHHH
Q 047840 237 SGVAMNGDAKKSLELFDRMVKSGTQPTETTF---VAVLT--TCTHAKM--VRDGLNLFENMSAVYGVEP-----QLEHYA 304 (445)
Q Consensus 237 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~---~~l~~--~~~~~~~--~~~a~~~~~~~~~~~~~~~-----~~~~~~ 304 (445)
.+..-.|++++|..+..+..+..-.-+...+ ..+.. .+...|+ ..+....+......+.... -..++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 8888889999998888776553222233322 22222 2445563 3333334444333211111 123333
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhcCC--CCCCH--HH--HHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--chhHH---
Q 047840 305 CVVDLLARAGMVEEAEKFIEEKMGGL--GGGDA--NV--WGALLSACRIYGKIEVGNRVWRKLAEMGITD--FSTHV--- 373 (445)
Q Consensus 305 ~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~--~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~--- 373 (445)
.+..++.+ .+.+..-.....+.+ ..|.. .. +..|+......|+.++|...+.++....... ...|.
T Consensus 585 ~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~ 661 (894)
T COG2909 585 QLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAA 661 (894)
T ss_pred HHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 44444444 333333222221111 11222 11 2356777788899999999999888733221 11121
Q ss_pred --HHHHHHHHcCChHHHHHHHHH
Q 047840 374 --LSYNIYKEAGWDMEANKVRKL 394 (445)
Q Consensus 374 --~l~~~~~~~g~~~~A~~~~~~ 394 (445)
.-.......|+..+|.....+
T Consensus 662 ~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 662 YKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHhhHHHhcccCCHHHHHHHHHh
Confidence 222234456888888776665
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.71 E-value=2.2 Score=35.78 Aligned_cols=57 Identities=16% Similarity=0.059 Sum_probs=40.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHcCChHHHHHHHHHHH
Q 047840 340 ALLSACRIYGKIEVGNRVWRKLAEMGITDF---STHVLSYNIYKEAGWDMEANKVRKLIS 396 (445)
Q Consensus 340 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~ 396 (445)
.+.+-|.+.|.+..|..-++++++.-|+.. ..+..+..+|...|-.++|...-+-+.
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 456677888888888888888888655533 344556677888888888887766554
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.34 Score=42.38 Aligned_cols=193 Identities=12% Similarity=0.177 Sum_probs=116.9
Q ss_pred hHHHHHHHHHcCCChHHHHHHh-------ccCCCC--ChhhHHHHHHHHHhcCCHhHHHHHHHHHHH-cCCCC---CHHH
Q 047840 99 TWTTMVDGYGKMGDFENARELF-------EKMPER--NAVSWSAIMAAYSRISDFKEVLSLFRQMQE-VGMKP---NESG 165 (445)
Q Consensus 99 ~~~~l~~~~~~~g~~~~A~~~~-------~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~p---~~~~ 165 (445)
++..+..+.++.|.+++++..- ....+. --..|-.+.+++-+.-++.+++.+-..-.. .|..| ....
T Consensus 45 ~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~ 124 (518)
T KOG1941|consen 45 VLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQV 124 (518)
T ss_pred HhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchh
Confidence 4455556666666666654431 111111 233456666677777777777766554433 12222 1123
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHcCC-----CCchhhhhHHHHHHHccCChHHHHHHhhcCCC-------CChh---
Q 047840 166 LVSVLTACAHLGAITQGLWVHSYAKRYHL-----EKNVILATAVVDMYSKCGHVHSALSVFEGISN-------KDAG--- 230 (445)
Q Consensus 166 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~~~~--- 230 (445)
..++..++...+.++++.+.|+.+.+.-. -....++..|...|.+..|+++|.-+..+..+ .|..
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 44566777778888888888888765321 12346788888899999998887766554322 2222
Q ss_pred ---hHHHHHHHHHhcCChHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHhhcCCcHHHHHHHHHHhH
Q 047840 231 ---AWNAMISGVAMNGDAKKSLELFDRMVK----SGTQPT-ETTFVAVLTTCTHAKMVRDGLNLFENMS 291 (445)
Q Consensus 231 ---~~~~l~~~~~~~~~~~~a~~~~~~m~~----~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (445)
+...|.-++...|+.-.|.+..++..+ .|-.|. ......+.+.|...|+.+.|+.-|+...
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 223345567778888888887776543 343332 2344566677888999999888887665
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.18 Score=43.62 Aligned_cols=93 Identities=10% Similarity=0.006 Sum_probs=62.5
Q ss_pred HhhcCCcHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCh
Q 047840 273 TCTHAKMVRDGLNLFENMSAVYGVEP-QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKI 351 (445)
Q Consensus 273 ~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 351 (445)
-|.++|.+++|+.+|..... +.| |..++..-..+|.+..++..|..-....+..+ ..-...|..-+.+-...|+.
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhH
Confidence 46677777777777777663 344 66666666667777777777776666655443 33345566666666667777
Q ss_pred HHHHHHHHHHHHhCCCCc
Q 047840 352 EVGNRVWRKLAEMGITDF 369 (445)
Q Consensus 352 ~~a~~~~~~~~~~~~~~~ 369 (445)
.+|.+-++.++++.|.+.
T Consensus 182 ~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKNI 199 (536)
T ss_pred HHHHHhHHHHHhhCcccH
Confidence 788887888888777743
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=94.50 E-value=1.2 Score=34.51 Aligned_cols=120 Identities=13% Similarity=0.002 Sum_probs=68.9
Q ss_pred HHHHHHHHHH---hhcCCcHHHHHHHHHHhHHhhCCCCChhHHHH-HHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHH
Q 047840 264 ETTFVAVLTT---CTHAKMVRDGLNLFENMSAVYGVEPQLEHYAC-VVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWG 339 (445)
Q Consensus 264 ~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 339 (445)
..+.+.|+.. -.+.++.+++..++..+.- +.|....... -.-.+...|++.+|..+|+++.+.. |....-.
T Consensus 7 ~~iv~gLie~~~~al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~k 81 (160)
T PF09613_consen 7 DEIVGGLIEVLSVALRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAK 81 (160)
T ss_pred HHHHHHHHHHHHHHHccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHH
Confidence 3444555544 3467889999999988884 3665443322 2334678899999999999986544 4444445
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHH
Q 047840 340 ALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANK 390 (445)
Q Consensus 340 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 390 (445)
.|+..|....+-..=...-+++.+.+++ +. -..++..+....+...|..
T Consensus 82 ALlA~CL~~~~D~~Wr~~A~evle~~~d-~~-a~~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 82 ALLALCLYALGDPSWRRYADEVLESGAD-PD-ARALVRALLARADLEPAHE 130 (160)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhcCCC-hH-HHHHHHHHHHhccccchhh
Confidence 5555555544444445555666665553 22 2233444444444333333
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.45 E-value=2.6 Score=35.40 Aligned_cols=170 Identities=14% Similarity=0.143 Sum_probs=110.4
Q ss_pred hhhhhHHHHHHHccCChHHHHHHhhcCCCC------ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 047840 198 VILATAVVDMYSKCGHVHSALSVFEGISNK------DAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVL 271 (445)
Q Consensus 198 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 271 (445)
...|+ -+..-.+.|++++|.+.|+.+... ...+.-.++-++.+.++++.|+..+++....-......-|..-|
T Consensus 35 ~~LY~-~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 35 SELYN-EGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHH-HHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 34444 445567889999999999998763 23355566778889999999999999987753322233344444
Q ss_pred HHhh---cC----Cc---HHHHHHHHHHhHHhhC---CCCChhHH------------HHHHHHHHhcCChHHHHHHHHHH
Q 047840 272 TTCT---HA----KM---VRDGLNLFENMSAVYG---VEPQLEHY------------ACVVDLLARAGMVEEAEKFIEEK 326 (445)
Q Consensus 272 ~~~~---~~----~~---~~~a~~~~~~~~~~~~---~~~~~~~~------------~~l~~~~~~~g~~~~A~~~~~~~ 326 (445)
.+++ .. .+ ...|..-|+++..++. ..||...- ..+.+.|.+.|.+..|..-++++
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v 193 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEV 193 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 4443 22 23 3455566666665421 11222221 12345678899999999999999
Q ss_pred hcCCCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCc
Q 047840 327 MGGLGGGD---ANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDF 369 (445)
Q Consensus 327 ~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 369 (445)
++.- +-. ...+-.+..+|...|-.++|...-+-+....|+++
T Consensus 194 ~e~y-~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 194 LENY-PDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred Hhcc-ccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 8872 333 34566677889999999999887555555555544
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.11 Score=28.74 Aligned_cols=24 Identities=17% Similarity=0.123 Sum_probs=12.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHH
Q 047840 338 WGALLSACRIYGKIEVGNRVWRKL 361 (445)
Q Consensus 338 ~~~l~~~~~~~g~~~~a~~~~~~~ 361 (445)
|..|...|.+.|++++|+++++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444555555555555555555553
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.34 E-value=4.8 Score=38.09 Aligned_cols=363 Identities=12% Similarity=0.090 Sum_probs=207.0
Q ss_pred hHHHHHHHHHHhcCCCCCccc-HHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHH-hcCCHHHHHHHh
Q 047840 12 KLSVFCYLDMLDMGFEPNNYT-FPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYS-LVHKMGTARALF 89 (445)
Q Consensus 12 ~~A~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~ 89 (445)
+.+..++..++.. -|.... |......=.+.|..+ .+..+|+..+. +++.+...|......+. ..|+.+.....|
T Consensus 62 ~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~-~s~~Vfergv~-aip~SvdlW~~Y~~f~~n~~~d~~~lr~~f 137 (577)
T KOG1258|consen 62 DALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAE-NSVKVFERGVQ-AIPLSVDLWLSYLAFLKNNNGDPETLRDLF 137 (577)
T ss_pred HHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHH-hhhhHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 4445555555532 254443 344444446777888 88888888877 57777777777665544 346777777778
Q ss_pred ccCCC------CChhhHHHHHHHHHcCCChHHHHHHhccCCCCChhhHHHHHHHHHh---c------CCHhHHHHHHHHH
Q 047840 90 DKSPD------RDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSR---I------SDFKEVLSLFRQM 154 (445)
Q Consensus 90 ~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~---~------~~~~~a~~~~~~~ 154 (445)
+.... .+...|...|.--...+++.....+++++.+-....|+..-.-|.+ . ...+++.++-...
T Consensus 138 e~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~ 217 (577)
T KOG1258|consen 138 ERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDV 217 (577)
T ss_pred HHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhH
Confidence 76543 2555677777777778888888888888876333333332222211 1 1223333222221
Q ss_pred HH-------------------cCCCCC-HH--HHHHHHHH-------HHccCChhHHHHHHHHHHHcC---C----CCch
Q 047840 155 QE-------------------VGMKPN-ES--GLVSVLTA-------CAHLGAITQGLWVHSYAKRYH---L----EKNV 198 (445)
Q Consensus 155 ~~-------------------~~~~p~-~~--~~~~l~~~-------~~~~~~~~~a~~~~~~~~~~~---~----~~~~ 198 (445)
.. .-..|. .. ..+.+... +............++.-.+.. + +++.
T Consensus 218 ~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql 297 (577)
T KOG1258|consen 218 AERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQL 297 (577)
T ss_pred HhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHH
Confidence 11 000111 10 11111111 111112222222333322221 1 2245
Q ss_pred hhhhHHHHHHHccCChHHHHHHhhcCCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-h
Q 047840 199 ILATAVVDMYSKCGHVHSALSVFEGISNK---DAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTT-C 274 (445)
Q Consensus 199 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~-~ 274 (445)
.+|..-+..-...|+.+.+.-+|+...-| -...|-..+.-....|+.+-|..++....+--++ +......+-.. .
T Consensus 298 ~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k-~~~~i~L~~a~f~ 376 (577)
T KOG1258|consen 298 KNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVK-KTPIIHLLEARFE 376 (577)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCC-CCcHHHHHHHHHH
Confidence 67777778888899999999999887654 2334555555555558888888777665554222 22222222222 3
Q ss_pred hcCCcHHHHHHHHHHhHHhhCCCCChh-HHHHHHHHHHhcCChHHHH---HHHHHHhcCCCCCCHHHHHHHHH-----HH
Q 047840 275 THAKMVRDGLNLFENMSAVYGVEPQLE-HYACVVDLLARAGMVEEAE---KFIEEKMGGLGGGDANVWGALLS-----AC 345 (445)
Q Consensus 275 ~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~---~~~~~~~~~~~~~~~~~~~~l~~-----~~ 345 (445)
-..|+...|..+++.+... . |+.. .-..-+....+.|+.+.+. .++...... ..+..+...+.- .+
T Consensus 377 e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~--~~~~~i~~~l~~~~~r~~~ 451 (577)
T KOG1258|consen 377 ESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG--KENNGILEKLYVKFARLRY 451 (577)
T ss_pred HhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc--ccCcchhHHHHHHHHHHHH
Confidence 4578999999999999975 3 5533 2223345566788888888 444444322 222222222221 23
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCC
Q 047840 346 RIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGW 384 (445)
Q Consensus 346 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 384 (445)
.-.++.+.|..++.++.+..|++...|..+++.....+.
T Consensus 452 ~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 452 KIREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 346788999999999999999988888888887777653
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=94.24 E-value=3.4 Score=35.97 Aligned_cols=62 Identities=13% Similarity=-0.117 Sum_probs=29.0
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 047840 298 PQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366 (445)
Q Consensus 298 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 366 (445)
++..+-...+.++.+.|+ ..|...+-+..+.+ + .....+.++...|.. +|+..+.++.+..|
T Consensus 204 ~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~ 265 (280)
T PRK09687 204 KNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYKFD 265 (280)
T ss_pred CChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCC
Confidence 344444455555555555 33444443333222 1 123444555555553 45556666555444
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.14 E-value=2 Score=32.83 Aligned_cols=125 Identities=9% Similarity=0.057 Sum_probs=67.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHH
Q 047840 232 WNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLA 311 (445)
Q Consensus 232 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 311 (445)
...++..+...+.+.....+++.+...+. .+....+.++..|++.+ .......+.. .++.......+..|.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~~~c~ 80 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVGKLCE 80 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHHHHHH
Confidence 44556666666677777777777766653 45566677777776543 2333333331 122233344566666
Q ss_pred hcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHc-CChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 047840 312 RAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIY-GKIEVGNRVWRKLAEMGITDFSTHVLSYNIY 379 (445)
Q Consensus 312 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 379 (445)
+.+-++++..++.++ |. +...+..+... ++++.|.+++.+ +.++..|..++..+
T Consensus 81 ~~~l~~~~~~l~~k~---~~------~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~ 135 (140)
T smart00299 81 KAKLYEEAVELYKKD---GN------FKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKAL 135 (140)
T ss_pred HcCcHHHHHHHHHhh---cC------HHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHH
Confidence 777777777777665 31 22223333333 666666666654 22344555555444
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.09 E-value=3 Score=34.71 Aligned_cols=203 Identities=14% Similarity=0.056 Sum_probs=117.1
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCCCC--hhhHHHHHHHHHhc
Q 047840 165 GLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKD--AGAWNAMISGVAMN 242 (445)
Q Consensus 165 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~l~~~~~~~ 242 (445)
.|.-...+|....++++|..-+.+..+.- +.+...|.+ ...++.|.-+.+++.+-+ +..|+.-...|..+
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~y-EnnrslfhA-------AKayEqaamLake~~klsEvvdl~eKAs~lY~E~ 104 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKGY-ENNRSLFHA-------AKAYEQAAMLAKELSKLSEVVDLYEKASELYVEC 104 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHH-HhcccHHHH-------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 45555667778888888887776665321 222222221 123444444555544432 22455556778888
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhC----CCCChhHHHHHHHHHHhcCChHH
Q 047840 243 GDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG----VEPQLEHYACVVDLLARAGMVEE 318 (445)
Q Consensus 243 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~ 318 (445)
|.++.|-..+++.-+. ....++++|+++|.+...... .+.-...+......+.+...+++
T Consensus 105 GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~E 168 (308)
T KOG1585|consen 105 GSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTE 168 (308)
T ss_pred CCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhH
Confidence 8888777777665332 123345555555555443211 11123345555667778888888
Q ss_pred HHHHHHHHhcC----CCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHH----hCCCCchhHHHHHHHHHHcCChHHHH
Q 047840 319 AEKFIEEKMGG----LGGGDA-NVWGALLSACRIYGKIEVGNRVWRKLAE----MGITDFSTHVLSYNIYKEAGWDMEAN 389 (445)
Q Consensus 319 A~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~ 389 (445)
|-..+.+-... .-.++. ..+...|-.+.-..++..|...++.-.+ .++++..+...|+.+| ..|+.+++.
T Consensus 169 aa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~ 247 (308)
T KOG1585|consen 169 AATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIK 247 (308)
T ss_pred HHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHH
Confidence 77666543211 112232 3345555556666799999999998655 4566778888888776 467777777
Q ss_pred HHH
Q 047840 390 KVR 392 (445)
Q Consensus 390 ~~~ 392 (445)
.++
T Consensus 248 kvl 250 (308)
T KOG1585|consen 248 KVL 250 (308)
T ss_pred HHH
Confidence 654
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.03 E-value=3.8 Score=35.72 Aligned_cols=221 Identities=9% Similarity=0.033 Sum_probs=116.2
Q ss_pred HhcCCHhHHHHHHHHHHHcCCCCCHHHHHHH-------HHHHHccC-ChhHHHHHHHHHHHc----C----CCCc-----
Q 047840 139 SRISDFKEVLSLFRQMQEVGMKPNESGLVSV-------LTACAHLG-AITQGLWVHSYAKRY----H----LEKN----- 197 (445)
Q Consensus 139 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l-------~~~~~~~~-~~~~a~~~~~~~~~~----~----~~~~----- 197 (445)
.+.|+.+.|..++.+........++.....+ .......+ +++.|..++++..+. + ..++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 4567777777777766542211122222222 22233444 777776666665443 1 1222
Q ss_pred hhhhhHHHHHHHccCChH---HHHHHhhcCCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 047840 198 VILATAVVDMYSKCGHVH---SALSVFEGISN--K-DAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVL 271 (445)
Q Consensus 198 ~~~~~~l~~~~~~~g~~~---~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 271 (445)
..+...++.+|...+..+ +|..+++.+.. + .+..+..-+..+.+.++.+.+.+.+.+|... +.-....+..++
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~~~l 162 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchHHHHH
Confidence 245677788888877654 44555555533 2 3445555667777788999999999999886 332344455555
Q ss_pred HHh---hcCCcHHHHHHHHHHhHHhhCCCCChh-HHH-HHHHH-HH--hcCC------hHHHHHHHHHHhcC-CCCCCHH
Q 047840 272 TTC---THAKMVRDGLNLFENMSAVYGVEPQLE-HYA-CVVDL-LA--RAGM------VEEAEKFIEEKMGG-LGGGDAN 336 (445)
Q Consensus 272 ~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~-~l~~~-~~--~~g~------~~~A~~~~~~~~~~-~~~~~~~ 336 (445)
..+ .... ...+...+..+... .+.|... ... .++.. +. +.++ .+...++++.+.+. +.+.+..
T Consensus 163 ~~i~~l~~~~-~~~a~~~ld~~l~~-r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~ 240 (278)
T PF08631_consen 163 HHIKQLAEKS-PELAAFCLDYLLLN-RFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAE 240 (278)
T ss_pred HHHHHHHhhC-cHHHHHHHHHHHHH-HhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHH
Confidence 544 3333 34555666555544 4455543 211 12211 11 1111 34444455533222 2233333
Q ss_pred HHH---HH----HHHHHHcCChHHHHHHHHHHH
Q 047840 337 VWG---AL----LSACRIYGKIEVGNRVWRKLA 362 (445)
Q Consensus 337 ~~~---~l----~~~~~~~g~~~~a~~~~~~~~ 362 (445)
+-. ++ +..+.+.++++.|.+.|+-..
T Consensus 241 ~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 241 AASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 322 22 234567889999999988554
|
It is also involved in sporulation []. |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.64 Score=35.26 Aligned_cols=84 Identities=11% Similarity=0.012 Sum_probs=54.8
Q ss_pred hhHHHHHHHHH---HhcCChHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHH
Q 047840 300 LEHYACVVDLL---ARAGMVEEAEKFIEEKMGGL-GGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLS 375 (445)
Q Consensus 300 ~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 375 (445)
..+.+.|++.. ...++++++..+++.+.-.. -.+...++. ...+...|++.+|.++|+++.+..+..+..-..+
T Consensus 7 ~~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~ 84 (153)
T TIGR02561 7 NRLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFD--GWLLIARGNYDEAARILRELLSSAGAPPYGKALL 84 (153)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhH--HHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHH
Confidence 34455555543 35788888888888876432 012233333 3346778899999999999888777666555666
Q ss_pred HHHHHHcCCh
Q 047840 376 YNIYKEAGWD 385 (445)
Q Consensus 376 ~~~~~~~g~~ 385 (445)
+.++.-.|+.
T Consensus 85 A~CL~al~Dp 94 (153)
T TIGR02561 85 ALCLNAKGDA 94 (153)
T ss_pred HHHHHhcCCh
Confidence 6666666664
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.78 E-value=7.7 Score=38.40 Aligned_cols=138 Identities=13% Similarity=0.140 Sum_probs=86.8
Q ss_pred hhhcCCchHHHHHHHHHHhcCCCCCcccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHH
Q 047840 5 YMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGT 84 (445)
Q Consensus 5 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 84 (445)
+.+.|++++|...|-+-... +.| ..++.-+....+.. .--.+++.+.+.|+. +...-+.|+.+|.+.++.+.
T Consensus 378 Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~Ik-nLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~k 449 (933)
T KOG2114|consen 378 LYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIK-NLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEK 449 (933)
T ss_pred HHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHH-HHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHH
Confidence 45789999999988876531 112 23566665555566 566677788887864 44555788999999999999
Q ss_pred HHHHhccCCCCChh-hHHHHHHHHHcCCChHHHHHHhccCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHH
Q 047840 85 ARALFDKSPDRDVV-TWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQM 154 (445)
Q Consensus 85 a~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 154 (445)
-.+..+...+.... -....+..+.+.+-.++|..+-.+... +...... .+-..+++++|++.+..+
T Consensus 450 L~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~-he~vl~i---lle~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 450 LTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKK-HEWVLDI---LLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhcc-CHHHHHH---HHHHhcCHHHHHHHHhcC
Confidence 88888776632111 234556666666666666666554443 2222222 233456677777766654
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=93.77 E-value=1.6 Score=30.58 Aligned_cols=60 Identities=13% Similarity=0.063 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHH
Q 047840 317 EEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY 376 (445)
Q Consensus 317 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 376 (445)
-+..+-++.+....+.|++.+..+.+++|.+.+++..|+++|+-+...-.+....|..++
T Consensus 27 we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l 86 (108)
T PF02284_consen 27 WELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL 86 (108)
T ss_dssp HHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH
T ss_pred HHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 367777888887788999999999999999999999999999998875554443565544
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.72 E-value=3.4 Score=34.13 Aligned_cols=108 Identities=9% Similarity=0.072 Sum_probs=54.7
Q ss_pred cCCcHHHHHHHHHHhHHhh----CCCCChhHHHHHHHHHHhc-CChHHHHHHHHHHhcC--CCCCCHHH---HHHHHHHH
Q 047840 276 HAKMVRDGLNLFENMSAVY----GVEPQLEHYACVVDLLARA-GMVEEAEKFIEEKMGG--LGGGDANV---WGALLSAC 345 (445)
Q Consensus 276 ~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~--~~~~~~~~---~~~l~~~~ 345 (445)
+..++++|...++...+.+ .+..-...+-.+...|-.- .++++|+..|+..-+- +-+.+... +.-+..--
T Consensus 85 kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~ya 164 (288)
T KOG1586|consen 85 KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYA 164 (288)
T ss_pred hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHH
Confidence 3346666655555444321 0111112222344444433 5666777776665332 21222222 22333334
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcC
Q 047840 346 RIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG 383 (445)
Q Consensus 346 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 383 (445)
...+++.+|+++|+++.....+++..-..+=.-+.+.|
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAg 202 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAG 202 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHH
Confidence 56788999999999998877766544444333344444
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=93.70 E-value=0.82 Score=31.62 Aligned_cols=62 Identities=15% Similarity=0.033 Sum_probs=44.8
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHH
Q 047840 315 MVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY 376 (445)
Q Consensus 315 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 376 (445)
+.-++.+-++.+....+.|++.+..+.+++|.+.+++..|+++|+-+......+...|..++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~l 83 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYIL 83 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHH
Confidence 44466677777777778888888888888888888888888888887754433333454443
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.69 E-value=1.8 Score=34.58 Aligned_cols=95 Identities=13% Similarity=-0.015 Sum_probs=66.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCH--HHHHHHHHHHHHcCChHHHHHHHHHHHHhCC--CCchh----H
Q 047840 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDA--NVWGALLSACRIYGKIEVGNRVWRKLAEMGI--TDFST----H 372 (445)
Q Consensus 301 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~----~ 372 (445)
..+..+.+.|.+.|+.++|.+.|.++.+....+.. ..+..+++.....+++..+...+.++...-. .+... -
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 45667888889999999999999988776544443 4567788888888899888888888776221 22211 1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHH
Q 047840 373 VLSYNIYKEAGWDMEANKVRKLI 395 (445)
Q Consensus 373 ~~l~~~~~~~g~~~~A~~~~~~m 395 (445)
..-+-.+...|++.+|-+.|-..
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHcc
Confidence 12333456678888888877544
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.67 E-value=0.18 Score=27.79 Aligned_cols=26 Identities=15% Similarity=-0.047 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHH
Q 047840 371 THVLSYNIYKEAGWDMEANKVRKLIS 396 (445)
Q Consensus 371 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 396 (445)
++..|+.+|.+.|++++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46789999999999999999999854
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=93.67 E-value=0.21 Score=26.92 Aligned_cols=30 Identities=17% Similarity=0.121 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 047840 337 VWGALLSACRIYGKIEVGNRVWRKLAEMGI 366 (445)
Q Consensus 337 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 366 (445)
+|..+...+...|++++|.+.|++.++..|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 456666677777777777777777777666
|
... |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.21 Score=28.50 Aligned_cols=28 Identities=21% Similarity=0.243 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 047840 336 NVWGALLSACRIYGKIEVGNRVWRKLAE 363 (445)
Q Consensus 336 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 363 (445)
.+++.+...|...|++++|..+++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3455555566666666666666665554
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.57 E-value=8.4 Score=38.16 Aligned_cols=167 Identities=12% Similarity=0.094 Sum_probs=96.8
Q ss_pred hchhhcCCchHHHHHHHHHHhcCCCCCcccHHHHH----HHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHh
Q 047840 3 RGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLI----KACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSL 78 (445)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 78 (445)
..+.+..-++-|+.+-+. .+ .+..+...+. .-+.+.|+++ .|...|-+.+.. +.|. .++.-|..
T Consensus 342 ~iL~kK~ly~~Ai~LAk~---~~--~d~d~~~~i~~kYgd~Ly~Kgdf~-~A~~qYI~tI~~-le~s-----~Vi~kfLd 409 (933)
T KOG2114|consen 342 DILFKKNLYKVAINLAKS---QH--LDEDTLAEIHRKYGDYLYGKGDFD-EATDQYIETIGF-LEPS-----EVIKKFLD 409 (933)
T ss_pred HHHHHhhhHHHHHHHHHh---cC--CCHHHHHHHHHHHHHHHHhcCCHH-HHHHHHHHHccc-CChH-----HHHHHhcC
Confidence 344555667777777554 23 2333333333 3356778888 666665443321 2222 34555666
Q ss_pred cCCHHHHHHHhccCCCC---ChhhHHHHHHHHHcCCChHHHHHHhccCCCCChh-hHHHHHHHHHhcCCHhHHHHHHHHH
Q 047840 79 VHKMGTARALFDKSPDR---DVVTWTTMVDGYGKMGDFENARELFEKMPERNAV-SWSAIMAAYSRISDFKEVLSLFRQM 154 (445)
Q Consensus 79 ~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~ 154 (445)
...+.+-..+++.+.+. +...-..|+.+|.+.++.+.-.++.+........ -....+..+.+.+-.++|..+-...
T Consensus 410 aq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~ 489 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKF 489 (933)
T ss_pred HHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHh
Confidence 66666666666665542 4445567889999999999888888877632111 2445667777777777776654443
Q ss_pred HHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHH
Q 047840 155 QEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYA 189 (445)
Q Consensus 155 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 189 (445)
.. +......++ -..+++++|.++++.+
T Consensus 490 ~~-----he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 490 KK-----HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred cc-----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 21 333333333 3456677777665543
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.39 E-value=7.3 Score=36.94 Aligned_cols=126 Identities=13% Similarity=0.171 Sum_probs=85.1
Q ss_pred cccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHhccCCC---CChhhHHHHHHH
Q 047840 30 NYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPD---RDVVTWTTMVDG 106 (445)
Q Consensus 30 ~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~ 106 (445)
...|..++.---.....+ .++.+++.+... .|.--.-|......=.+.|..+.+.++|++.+. .+...|...+.-
T Consensus 45 f~~wt~li~~~~~~~~~~-~~r~~y~~fL~k-yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f 122 (577)
T KOG1258|consen 45 FDAWTTLIQENDSIEDVD-ALREVYDIFLSK-YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAF 122 (577)
T ss_pred ccchHHHHhccCchhHHH-HHHHHHHHHHhh-CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 334555555444444445 677777777653 222233466666666788999999999998765 255556655544
Q ss_pred HH-cCCChHHHHHHhccCCC------CChhhHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 047840 107 YG-KMGDFENARELFEKMPE------RNAVSWSAIMAAYSRISDFKEVLSLFRQMQEV 157 (445)
Q Consensus 107 ~~-~~g~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 157 (445)
+. ..|+.+...+.|++... .+...|...|..-...+++.....+|++.++.
T Consensus 123 ~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 123 LKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 43 56777777888887764 35667888888888889999999999998873
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=93.36 E-value=16 Score=40.87 Aligned_cols=313 Identities=9% Similarity=0.069 Sum_probs=171.3
Q ss_pred HHHHHHHhcCCHHHHHHHhccC----CCC--ChhhHHHHHHHHHcCCChHHHHHHhcc-CCCCChhhHHHHHHHHHhcCC
Q 047840 71 SLLEFYSLVHKMGTARALFDKS----PDR--DVVTWTTMVDGYGKMGDFENARELFEK-MPERNAVSWSAIMAAYSRISD 143 (445)
Q Consensus 71 ~l~~~~~~~g~~~~a~~~~~~~----~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~l~~~~~~~~~ 143 (445)
.+..+=.+++.+.+|.-.+++- .+. ...-+-.+...|..-+++|...-+... ...|+. ...|-.....|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl---~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSL---YQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccH---HHHHHHHHhhcc
Confidence 3444556788888998888873 111 222344445588888888887777663 333322 233445667899
Q ss_pred HhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchh-hhhHHHHHHHccCChHHHHHHhh
Q 047840 144 FKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVI-LATAVVDMYSKCGHVHSALSVFE 222 (445)
Q Consensus 144 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~ 222 (445)
+..|...|+.+.+.+ ++...+++-+++.....+.+....-..+-..... .+... .++.=+.+--+.++++.......
T Consensus 1465 ~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 999999999998764 3346677877777777777777666554444332 22222 23333445567778887777766
Q ss_pred cCCCCChhhHHHH--HHHHHhcCC--hHHHHHHHHHHHHcCCCC---------CHHHHHHHHHHhhcCCcHHHHHHHHHH
Q 047840 223 GISNKDAGAWNAM--ISGVAMNGD--AKKSLELFDRMVKSGTQP---------TETTFVAVLTTCTHAKMVRDGLNLFEN 289 (445)
Q Consensus 223 ~~~~~~~~~~~~l--~~~~~~~~~--~~~a~~~~~~m~~~~~~p---------~~~~~~~l~~~~~~~~~~~~a~~~~~~ 289 (445)
..+...|... ...+.+..+ .-.-.+..+-+++.-+.| -...|..++....-. +.+. ..+.
T Consensus 1543 ---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~-el~~---~~~~ 1615 (2382)
T KOG0890|consen 1543 ---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL-ELEN---SIEE 1615 (2382)
T ss_pred ---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH-HHHH---HHHH
Confidence 4455555544 222222222 111112333332221111 012233333222110 0111 1111
Q ss_pred hHHhhCCCCChhH------HHHHH---HHHHhcCChHHHHH-HHHHH-hcCCC-CCCHHHHHHHHHHHHHcCChHHHHHH
Q 047840 290 MSAVYGVEPQLEH------YACVV---DLLARAGMVEEAEK-FIEEK-MGGLG-GGDANVWGALLSACRIYGKIEVGNRV 357 (445)
Q Consensus 290 ~~~~~~~~~~~~~------~~~l~---~~~~~~g~~~~A~~-~~~~~-~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~ 357 (445)
. .++.++..+ |..-+ ..+.+..+.--|.+ .+... .+.+. .--..+|....+.....|+++.|...
T Consensus 1616 l---~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~na 1692 (2382)
T KOG0890|consen 1616 L---KKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNA 1692 (2382)
T ss_pred h---hccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHH
Confidence 1 122332211 21111 11222111111111 11111 11111 22356899999999999999999998
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 047840 358 WRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGM 400 (445)
Q Consensus 358 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 400 (445)
+-.+.+..+ +.++...+......|+...|+.+++.......
T Consensus 1693 ll~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1693 LLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 888888775 45788999999999999999999998876544
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=93.05 E-value=2.8 Score=31.15 Aligned_cols=59 Identities=8% Similarity=0.169 Sum_probs=29.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHh
Q 047840 234 AMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAV 293 (445)
Q Consensus 234 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (445)
..+..+...|+-+.-.+++..+.+. -.+++.....+..+|.+.|+..++.+++.++-+.
T Consensus 91 ~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 91 LALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 3445555566666666666655442 3455555555666666666666666666555543
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.00 E-value=3.9 Score=32.75 Aligned_cols=114 Identities=12% Similarity=0.038 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHH--HHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHH-----HHHHHHHhcCChHHH
Q 047840 247 KSLELFDRMVKSGTQPTETTFVAV--LTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYA-----CVVDLLARAGMVEEA 319 (445)
Q Consensus 247 ~a~~~~~~m~~~~~~p~~~~~~~l--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~A 319 (445)
+......++...+......++..| ...+...+++++|...++..... |....+. .|.......|.+++|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 444445555554222222222222 33466777788887777766632 2222222 234455667788888
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 047840 320 EKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366 (445)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 366 (445)
+.+++...+.+ -.......-.+++...|+-++|...|++.++.++
T Consensus 146 L~~L~t~~~~~--w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 146 LKTLDTIKEES--WAAIVAELRGDILLAKGDKQEARAAYEKALESDA 190 (207)
T ss_pred HHHHhcccccc--HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccC
Confidence 88877664333 1223344455677777888888888888777663
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=92.96 E-value=2.1 Score=32.56 Aligned_cols=63 Identities=14% Similarity=0.301 Sum_probs=44.9
Q ss_pred CHHHHHHHHHH---hhcCCcHHHHHHHHHHhHHhhCCCCC---hhHHHHHHHHHHhcCChHHHHHHHHHHhcCC
Q 047840 263 TETTFVAVLTT---CTHAKMVRDGLNLFENMSAVYGVEPQ---LEHYACVVDLLARAGMVEEAEKFIEEKMGGL 330 (445)
Q Consensus 263 ~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 330 (445)
+....+.|+.. -...++.+++..+++.+.-. .|+ ..++... .+...|++++|..+|+++.+.+
T Consensus 6 s~~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvL---rP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 6 SNRLLGGLIEVLMYALRSADPYDAQAMLDALRVL---RPNLKELDMFDGW--LLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCCccccchhHHH--HHHHcCCHHHHHHHHHhhhccC
Confidence 34445555544 34578999999999999844 555 3444433 3678999999999999997654
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.91 E-value=1.1 Score=38.52 Aligned_cols=101 Identities=13% Similarity=0.145 Sum_probs=74.1
Q ss_pred cCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCCC-C-----hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 047840 192 YHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK-D-----AGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTET 265 (445)
Q Consensus 192 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~-----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 265 (445)
.|.+....+...++..-....+++.++..+-++... + ..+-.+.++.+.+ -++++++.++..=++-|+-||.+
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHc-cChHHHHHHHhCcchhccccchh
Confidence 455556666666776667778888998888777642 1 1122223333333 37788998888888889999999
Q ss_pred HHHHHHHHhhcCCcHHHHHHHHHHhHHh
Q 047840 266 TFVAVLTTCTHAKMVRDGLNLFENMSAV 293 (445)
Q Consensus 266 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (445)
+++.+|+.+.+.+++.+|.++.-.|..+
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999999988777754
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=92.88 E-value=1.5 Score=35.15 Aligned_cols=64 Identities=14% Similarity=0.240 Sum_probs=43.9
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCChhHHHHHHHHHHHc
Q 047840 129 VSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPN--ESGLVSVLTACAHLGAITQGLWVHSYAKRY 192 (445)
Q Consensus 129 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 192 (445)
..+..+...|.+.|+.+.|++.|.++.+....|. ...+..++......+++..+.....++...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3566777788888888888888888776543332 234556677777777877777777666543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.72 E-value=0.14 Score=27.86 Aligned_cols=30 Identities=13% Similarity=0.056 Sum_probs=18.2
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHHcCChHHHH
Q 047840 325 EKMGGLGGGDANVWGALLSACRIYGKIEVGN 355 (445)
Q Consensus 325 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 355 (445)
+.++.. |.|+..|+.+...|...|++++|+
T Consensus 4 kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 4 KAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 334434 556666666666666666666664
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=92.57 E-value=4.2 Score=31.96 Aligned_cols=133 Identities=11% Similarity=0.077 Sum_probs=85.6
Q ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHHcCC--ChHHHHHHhccCCCCCh
Q 047840 51 MFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMG--DFENARELFEKMPERNA 128 (445)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~ 128 (445)
.+....+.+.+++|+...+..++..+.+.|++.....++.--.-+|.......+-.+.... -..-|++.+.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~---- 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG---- 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh----
Confidence 3455556677899999999999999999999999999887655555544444333322221 1344556666654
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 047840 129 VSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKR 191 (445)
Q Consensus 129 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 191 (445)
..+..++..+...|++-+|+++.+...... .++ ...++.+..+.+|...-..+++-...
T Consensus 90 ~~~~~iievLL~~g~vl~ALr~ar~~~~~~-~~~---~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 90 TAYEEIIEVLLSKGQVLEALRYARQYHKVD-SVP---ARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHcCCcc-cCC---HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 245667778889999999999987753321 122 23455665566665554455544444
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=92.54 E-value=15 Score=38.16 Aligned_cols=89 Identities=13% Similarity=0.096 Sum_probs=53.5
Q ss_pred CCCHHHHHHHH----HHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHH
Q 047840 261 QPTETTFVAVL----TTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDAN 336 (445)
Q Consensus 261 ~p~~~~~~~l~----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 336 (445)
.|+...+..+. ..+...+.+++|.-.|+..-+. .--+.+|..+|+|.+|+.+-.++ ....|..
T Consensus 932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl----------ekAl~a~~~~~dWr~~l~~a~ql---~~~~de~ 998 (1265)
T KOG1920|consen 932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL----------EKALKAYKECGDWREALSLAAQL---SEGKDEL 998 (1265)
T ss_pred ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH----------HHHHHHHHHhccHHHHHHHHHhh---cCCHHHH
Confidence 45665554444 4455667777777777665421 23466788888888888888877 2222322
Q ss_pred H--HHHHHHHHHHcCChHHHHHHHHHHH
Q 047840 337 V--WGALLSACRIYGKIEVGNRVWRKLA 362 (445)
Q Consensus 337 ~--~~~l~~~~~~~g~~~~a~~~~~~~~ 362 (445)
. -..|..-+...+++-+|-+++.+..
T Consensus 999 ~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 999 VILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 2 2556666666777666666555543
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.52 E-value=0.92 Score=38.89 Aligned_cols=60 Identities=15% Similarity=0.107 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHH
Q 047840 337 VWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLIS 396 (445)
Q Consensus 337 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 396 (445)
++..++..+...|+++.+.+.+++++..+|-+...|..++.+|.+.|+...|+..|+.+.
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 344555555555555555555555555555555555555555666665555555555554
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=92.49 E-value=8 Score=34.99 Aligned_cols=64 Identities=13% Similarity=0.145 Sum_probs=51.9
Q ss_pred CCchhhhhHHHHHHHccCChHHHHHHhhcCCCC-------ChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 047840 195 EKNVILATAVVDMYSKCGHVHSALSVFEGISNK-------DAGAWNAMISGVAMNGDAKKSLELFDRMVKS 258 (445)
Q Consensus 195 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 258 (445)
.....++..++..+.+.|+++.|...+..+... ++.....-+..+...|+..+|+..++.....
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345567888899999999999999999887652 3455666678888899999999999988874
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=92.25 E-value=1.7 Score=39.76 Aligned_cols=121 Identities=9% Similarity=-0.070 Sum_probs=71.5
Q ss_pred CCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 047840 277 AKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNR 356 (445)
Q Consensus 277 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 356 (445)
.|+.-.|-+-+....+.+.-.|+.....+ ..+...|+++.+...+...... +.....+..++++.....|++++|..
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~--~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRS--VIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHH--HHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHH
Confidence 45555554444444333233333333222 3355667777777776654321 23445566777777777777777777
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 047840 357 VWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGM 400 (445)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 400 (445)
.-+.|+....+++......+..-...|-++++...++++...+-
T Consensus 379 ~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~ 422 (831)
T PRK15180 379 TAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNP 422 (831)
T ss_pred HHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCC
Confidence 77777776666666666555566666777777777777654433
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=92.02 E-value=0.45 Score=25.25 Aligned_cols=27 Identities=11% Similarity=0.086 Sum_probs=14.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCC
Q 047840 341 LLSACRIYGKIEVGNRVWRKLAEMGIT 367 (445)
Q Consensus 341 l~~~~~~~g~~~~a~~~~~~~~~~~~~ 367 (445)
+..++.+.|+.++|.+.|+++++..|+
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 344445555555555555555555443
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=91.79 E-value=5 Score=31.14 Aligned_cols=89 Identities=15% Similarity=0.061 Sum_probs=50.0
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH-HHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCC
Q 047840 237 SGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAV-LTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGM 315 (445)
Q Consensus 237 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 315 (445)
..-.+.++.+++..++..+.-. .|.......+ ...+...|++.+|..+|+++... .|.......|+..|....+
T Consensus 18 ~~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~---~~~~p~~kALlA~CL~~~~ 92 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER---APGFPYAKALLALCLYALG 92 (160)
T ss_pred HHHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc---CCCChHHHHHHHHHHHHcC
Confidence 3445677888888888887663 4544333222 22356778888888888887754 4544444555555544333
Q ss_pred hHHHHHHHHHHhcCC
Q 047840 316 VEEAEKFIEEKMGGL 330 (445)
Q Consensus 316 ~~~A~~~~~~~~~~~ 330 (445)
-..=...-+++.+.+
T Consensus 93 D~~Wr~~A~evle~~ 107 (160)
T PF09613_consen 93 DPSWRRYADEVLESG 107 (160)
T ss_pred ChHHHHHHHHHHhcC
Confidence 233333333344333
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.32 E-value=16 Score=36.03 Aligned_cols=150 Identities=15% Similarity=0.154 Sum_probs=75.3
Q ss_pred HHHHhcCCHHHHHHHhccCCCC-----ChhhHHHHHHHHHcCCChHHHHHHhccCCCCChhhHHHHHHHHHhcCCHhHHH
Q 047840 74 EFYSLVHKMGTARALFDKSPDR-----DVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVL 148 (445)
Q Consensus 74 ~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 148 (445)
+.+.+.+.+++|...-+..... -...+...|..+...|++++|-...-.|-..+..-|.-.+..+...++.....
T Consensus 364 ~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia 443 (846)
T KOG2066|consen 364 DWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIA 443 (846)
T ss_pred HHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhh
Confidence 4445556666666665544331 22345566666666666666666666665555555555555555555444332
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHH------------------HHHcCCCCchhhhhHHHHHHHc
Q 047840 149 SLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSY------------------AKRYHLEKNVILATAVVDMYSK 210 (445)
Q Consensus 149 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~------------------~~~~~~~~~~~~~~~l~~~~~~ 210 (445)
.++ .......++..|..++..+.. .+...-.++... ..+. .-+...-..|+..|..
T Consensus 444 ~~l---Pt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~--Se~~~L~e~La~LYl~ 517 (846)
T KOG2066|consen 444 PYL---PTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQN--SESTALLEVLAHLYLY 517 (846)
T ss_pred ccC---CCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhh--ccchhHHHHHHHHHHH
Confidence 221 111111233344444444433 111111111100 0110 1122334447888888
Q ss_pred cCChHHHHHHhhcCCCCCh
Q 047840 211 CGHVHSALSVFEGISNKDA 229 (445)
Q Consensus 211 ~g~~~~a~~~~~~~~~~~~ 229 (445)
.+++..|..++-...+.+.
T Consensus 518 d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 518 DNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred ccChHHHHHHHHhccChHH
Confidence 8999999888887776543
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.24 E-value=0.53 Score=25.31 Aligned_cols=27 Identities=22% Similarity=0.524 Sum_probs=17.7
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 047840 130 SWSAIMAAYSRISDFKEVLSLFRQMQE 156 (445)
Q Consensus 130 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 156 (445)
+|..+...|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 456666667777777777777776665
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=91.14 E-value=0.34 Score=37.21 Aligned_cols=128 Identities=16% Similarity=0.175 Sum_probs=76.5
Q ss_pred ChhchhhcCCchHHHHHHHHHHhcCCCCCcccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcC
Q 047840 1 MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVH 80 (445)
Q Consensus 1 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (445)
+|..+.+.+.++....+++.+...+...+....+.++..|++.++.+ ....+++ ..+.+....++..+.+.|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~-~l~~~L~-------~~~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYE-KLLEFLK-------TSNNYDLDKALRLCEKHG 84 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCC-HHHHTTT-------SSSSS-CTHHHHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCch-HHHHHcc-------cccccCHHHHHHHHHhcc
Confidence 46677788888889999998887665556777888888888888766 5555554 122244456777788888
Q ss_pred CHHHHHHHhccCCCCChhhHHHHHHHHHcCCChHHHHHHhccCCCCChhhHHHHHHHHHhcCC
Q 047840 81 KMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISD 143 (445)
Q Consensus 81 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~ 143 (445)
.+++|.-++.++...+. .+..+...++++.|.+.+.+. ++...|..++..+...+.
T Consensus 85 l~~~a~~Ly~~~~~~~~-----al~i~~~~~~~~~a~e~~~~~--~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 85 LYEEAVYLYSKLGNHDE-----ALEILHKLKDYEEAIEYAKKV--DDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp SHHHHHHHHHCCTTHTT-----CSSTSSSTHCSCCCTTTGGGC--SSSHHHHHHHHHHCTSTC
T ss_pred hHHHHHHHHHHcccHHH-----HHHHHHHHccHHHHHHHHHhc--CcHHHHHHHHHHHHhcCc
Confidence 88888777555432111 000122233333333333332 245667777776665554
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=90.99 E-value=14 Score=34.62 Aligned_cols=180 Identities=12% Similarity=0.056 Sum_probs=111.0
Q ss_pred CCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCC---CChhhHHHHH
Q 047840 160 KPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN---KDAGAWNAMI 236 (445)
Q Consensus 160 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~ 236 (445)
..|.....+++..+.......-.+.+..+|...| .+...+..++++|... ..+.-..+++++.+ .|+..-..|.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa 139 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELA 139 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHH
Confidence 3355666677777777777777777777777765 3556677777777776 44555556664433 2444444444
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCC------HHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHH
Q 047840 237 SGVAMNGDAKKSLELFDRMVKSGTQPT------ETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLL 310 (445)
Q Consensus 237 ~~~~~~~~~~~a~~~~~~m~~~~~~p~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 310 (445)
..|-+ ++...+...|.+...+ +-|. ...|..+.... ..+.+....+...+....|..--...+.-+-.-|
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yr-fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYR-FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 44444 6667777777766554 2221 11333333221 2456666777777766655555556666666777
Q ss_pred HhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 047840 311 ARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRI 347 (445)
Q Consensus 311 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 347 (445)
....++++|++++..+++.. ..|...-..++.-+..
T Consensus 216 s~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~lRd 251 (711)
T COG1747 216 SENENWTEAIRILKHILEHD-EKDVWARKEIIENLRD 251 (711)
T ss_pred ccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHHHH
Confidence 78888888888888887766 5666666666655544
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=90.95 E-value=0.44 Score=23.93 Aligned_cols=23 Identities=13% Similarity=0.065 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHcCChHHHHHHHH
Q 047840 371 THVLSYNIYKEAGWDMEANKVRK 393 (445)
Q Consensus 371 ~~~~l~~~~~~~g~~~~A~~~~~ 393 (445)
....++.++...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45667777888888888877664
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=90.91 E-value=0.8 Score=39.83 Aligned_cols=90 Identities=11% Similarity=-0.042 Sum_probs=73.2
Q ss_pred HHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChH
Q 047840 307 VDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDM 386 (445)
Q Consensus 307 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 386 (445)
...|.+.|.+++|+..|...+... +-|++++..-..+|.+...+..|..-...++.++-....+|...+.+-...|+..
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHH
Confidence 346889999999999999877654 4488888888899999999999998888888877766677888888888888888
Q ss_pred HHHHHHHHHHh
Q 047840 387 EANKVRKLISE 397 (445)
Q Consensus 387 ~A~~~~~~m~~ 397 (445)
+|.+-++...+
T Consensus 183 EAKkD~E~vL~ 193 (536)
T KOG4648|consen 183 EAKKDCETVLA 193 (536)
T ss_pred HHHHhHHHHHh
Confidence 88876665543
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.71 E-value=17 Score=35.35 Aligned_cols=153 Identities=15% Similarity=0.097 Sum_probs=73.9
Q ss_pred hcCChHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHhhcC----C-cHHHHHHHHHHhHHhhCCCCChhHHHHHHH
Q 047840 241 MNGDAKKSLELFDRMVK-------SGTQPTETTFVAVLTTCTHA----K-MVRDGLNLFENMSAVYGVEPQLEHYACVVD 308 (445)
Q Consensus 241 ~~~~~~~a~~~~~~m~~-------~~~~p~~~~~~~l~~~~~~~----~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 308 (445)
...+.+.|+.+|+.+.+ .| +......+..+|.+. . +.+.|..++....+. | .|+....-..+.
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~-g-~~~a~~~lg~~~ 335 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL-G-NPDAQYLLGVLY 335 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc-C-CchHHHHHHHHH
Confidence 34566666666666654 33 222333444444442 2 556677777766653 3 233332222221
Q ss_pred HHHh-cCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH--HcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCh
Q 047840 309 LLAR-AGMVEEAEKFIEEKMGGLGGGDANVWGALLSACR--IYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWD 385 (445)
Q Consensus 309 ~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 385 (445)
.... ..+...|.++|......| .++...+..+.-... -..+.+.|..+++++.+.++............+.. +++
T Consensus 336 ~~g~~~~d~~~A~~yy~~Aa~~G-~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~~~A~~~~~~~~~~g~-~~~ 413 (552)
T KOG1550|consen 336 ETGTKERDYRRAFEYYSLAAKAG-HILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGNPSAAYLLGAFYEYGV-GRY 413 (552)
T ss_pred HcCCccccHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccChhhHHHHHHHHHHcc-ccc
Confidence 1111 234567777777776666 333333322222111 22356777777777777663322111122222222 666
Q ss_pred HHHHHHHHHHHhcCC
Q 047840 386 MEANKVRKLISETGM 400 (445)
Q Consensus 386 ~~A~~~~~~m~~~~~ 400 (445)
+.+.-.+..+...|.
T Consensus 414 ~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 414 DTALALYLYLAELGY 428 (552)
T ss_pred cHHHHHHHHHHHhhh
Confidence 666666666655554
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=90.62 E-value=0.64 Score=24.88 Aligned_cols=29 Identities=17% Similarity=-0.047 Sum_probs=24.6
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 370 STHVLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 370 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
.++..++.++.+.|++++|.+.+++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46788999999999999999999988653
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=90.49 E-value=2.2 Score=29.65 Aligned_cols=62 Identities=15% Similarity=0.246 Sum_probs=39.4
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHH
Q 047840 244 DAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVV 307 (445)
Q Consensus 244 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 307 (445)
+.-++.+-++.+.....-|++....+.+++|.+.+++..|.++++.++.+.+ .+...|..++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~l 83 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYIL 83 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHH
Confidence 3445555556666666777777777777777777777777777777765322 2334555444
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.40 E-value=0.2 Score=43.42 Aligned_cols=91 Identities=12% Similarity=-0.068 Sum_probs=54.8
Q ss_pred hcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHH
Q 047840 312 RAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKV 391 (445)
Q Consensus 312 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 391 (445)
..|.+++|++.|...+..+ ++....|..-..++.+.++...|++-+..++++.|+...-|-.-..+....|+|++|...
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH
Confidence 3455666666666665555 455555555555666666666666666666666666555555555566666666666666
Q ss_pred HHHHHhcCCccC
Q 047840 392 RKLISETGMKKK 403 (445)
Q Consensus 392 ~~~m~~~~~~~~ 403 (445)
+....+.++.+.
T Consensus 205 l~~a~kld~dE~ 216 (377)
T KOG1308|consen 205 LALACKLDYDEA 216 (377)
T ss_pred HHHHHhccccHH
Confidence 666666555443
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.37 E-value=6.2 Score=37.48 Aligned_cols=150 Identities=15% Similarity=0.089 Sum_probs=94.7
Q ss_pred HccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHH
Q 047840 209 SKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFE 288 (445)
Q Consensus 209 ~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 288 (445)
.-.|+++.|..++..++++ ..+.++.-+.+.|-.++|+++- ..|+.. .....+.|+++.|.++..
T Consensus 597 vmrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~s-------~D~d~r-----Felal~lgrl~iA~~la~ 661 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALELS-------TDPDQR-----FELALKLGRLDIAFDLAV 661 (794)
T ss_pred hhhccccccccccccCchh---hhhhHHhHhhhccchHhhhhcC-------CChhhh-----hhhhhhcCcHHHHHHHHH
Confidence 3456777776666665532 2333444455566666666542 222221 223346688888887765
Q ss_pred HhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 047840 289 NMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITD 368 (445)
Q Consensus 289 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 368 (445)
+.. +..-|..|.++....|++..|.+.|.+..+ |..|+-.+...|+.+....+-....+.+..+
T Consensus 662 e~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N 725 (794)
T KOG0276|consen 662 EAN-------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKNN 725 (794)
T ss_pred hhc-------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcccc
Confidence 554 456788888888888999888888887643 4456666667777776666666666666544
Q ss_pred chhHHHHHHHHHHcCChHHHHHHHHH
Q 047840 369 FSTHVLSYNIYKEAGWDMEANKVRKL 394 (445)
Q Consensus 369 ~~~~~~l~~~~~~~g~~~~A~~~~~~ 394 (445)
. ...+|...|+++++.+++..
T Consensus 726 ~-----AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 726 L-----AFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred h-----HHHHHHHcCCHHHHHHHHHh
Confidence 3 23367778888888887754
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=90.05 E-value=17 Score=34.10 Aligned_cols=180 Identities=7% Similarity=0.024 Sum_probs=127.0
Q ss_pred CCchhhhhHHHHHHHccCChHHHHHHhhcCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047840 195 EKNVILATAVVDMYSKCGHVHSALSVFEGISN--KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLT 272 (445)
Q Consensus 195 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 272 (445)
+.|.....+++..+...-.+.-.+.+-.+|.. .+-..+..++++|..+ ..+.-..+|+++.+..+. |.+.-..|..
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 45666777888888888888877777777764 4667888999999988 668889999999886442 3333344444
Q ss_pred HhhcCCcHHHHHHHHHHhHHhhCCCCC------hhHHHHHHHHHHhcCChHHHHHHHHHHhcC-CCCCCHHHHHHHHHHH
Q 047840 273 TCTHAKMVRDGLNLFENMSAVYGVEPQ------LEHYACVVDLLARAGMVEEAEKFIEEKMGG-LGGGDANVWGALLSAC 345 (445)
Q Consensus 273 ~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~ 345 (445)
.|-+ ++.+.+...|..+..+ +-|. ...|.-+...- ..+.+....+...+... |...-...+..+-.-|
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 4544 8888999999888764 3331 12444444321 45677777777776544 4444556677777888
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 047840 346 RIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKE 381 (445)
Q Consensus 346 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 381 (445)
....++.+|++++..+++.+..+..+-..++..+..
T Consensus 216 s~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd 251 (711)
T COG1747 216 SENENWTEAIRILKHILEHDEKDVWARKEIIENLRD 251 (711)
T ss_pred ccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHH
Confidence 999999999999999999887776666666555444
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=90.05 E-value=2.6 Score=29.64 Aligned_cols=59 Identities=14% Similarity=0.237 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHH
Q 047840 247 KSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVV 307 (445)
Q Consensus 247 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 307 (445)
+..+-++.+.....-|++....+.+.+|.+.+++..|.++++.++.+.+. ....|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~--~~~~Y~~~l 86 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGN--KKEIYPYIL 86 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--hHHHHHHHH
Confidence 45555555555667778888888888888888888888888887765432 233565555
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=89.96 E-value=12 Score=32.53 Aligned_cols=137 Identities=10% Similarity=0.030 Sum_probs=73.2
Q ss_pred chhhhhHHHHHHHccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhh
Q 047840 197 NVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNG-DAKKSLELFDRMVKSGTQPTETTFVAVLTTCT 275 (445)
Q Consensus 197 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 275 (445)
+..+-...+.++.+.++.+....+..-+..+|...-...+.++.+.+ ....+...+..+.. .++..+-...+.++.
T Consensus 141 ~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg 217 (280)
T PRK09687 141 STNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLA 217 (280)
T ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHH
Confidence 44455555566666665443333344444455544444444554432 23455555555553 345666666677777
Q ss_pred cCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 047840 276 HAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACR 346 (445)
Q Consensus 276 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 346 (445)
+.++. .+...+-...+. ++ .....+.++...|.. +|...+..+.+.. ||..+-...+.+|.
T Consensus 218 ~~~~~-~av~~Li~~L~~----~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~--~d~~v~~~a~~a~~ 278 (280)
T PRK09687 218 LRKDK-RVLSVLIKELKK----GT--VGDLIIEAAGELGDK-TLLPVLDTLLYKF--DDNEIITKAIDKLK 278 (280)
T ss_pred ccCCh-hHHHHHHHHHcC----Cc--hHHHHHHHHHhcCCH-hHHHHHHHHHhhC--CChhHHHHHHHHHh
Confidence 77764 344444444432 22 233566777777774 6777777766433 46666665555553
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.94 E-value=6.1 Score=36.64 Aligned_cols=92 Identities=8% Similarity=0.079 Sum_probs=55.8
Q ss_pred HHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHH-HHcCChHHHHHHHHHH
Q 047840 283 GLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSAC-RIYGKIEVGNRVWRKL 361 (445)
Q Consensus 283 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~a~~~~~~~ 361 (445)
...+|..... .+.-|+..|...+..+.+.+.+.+...+|..|...+ +.++..|-.-..-. -.+.+++.|..+|.+.
T Consensus 90 Iv~lyr~at~--rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalflrg 166 (568)
T KOG2396|consen 90 IVFLYRRATN--RFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFLRG 166 (568)
T ss_pred HHHHHHHHHH--hcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHHHH
Confidence 3445555554 334477777777766666666777777777777654 44444443333322 2333477777777777
Q ss_pred HHhCCCCchhHHHHHH
Q 047840 362 AEMGITDFSTHVLSYN 377 (445)
Q Consensus 362 ~~~~~~~~~~~~~l~~ 377 (445)
++..|+.+..|....+
T Consensus 167 LR~npdsp~Lw~eyfr 182 (568)
T KOG2396|consen 167 LRFNPDSPKLWKEYFR 182 (568)
T ss_pred hhcCCCChHHHHHHHH
Confidence 7777777766654433
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=89.69 E-value=3.8 Score=33.09 Aligned_cols=78 Identities=17% Similarity=-0.011 Sum_probs=54.9
Q ss_pred HHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC----CCchhHHHHHHHHHHcCCh
Q 047840 310 LARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI----TDFSTHVLSYNIYKEAGWD 385 (445)
Q Consensus 310 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~ 385 (445)
..+.|+ +.|.+.|-.+...+.--++.....|...|. ..+.++++.++-+++++.. .++.++..|+..|.+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 344555 677777777776664455555555555444 5788889999888888433 2677888899999999888
Q ss_pred HHHH
Q 047840 386 MEAN 389 (445)
Q Consensus 386 ~~A~ 389 (445)
+.|-
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 8774
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.56 E-value=7.1 Score=33.90 Aligned_cols=93 Identities=11% Similarity=0.109 Sum_probs=44.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcC---CCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHH
Q 047840 234 AMISGVAMNGDAKKSLELFDRMVKSG---TQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLL 310 (445)
Q Consensus 234 ~l~~~~~~~~~~~~a~~~~~~m~~~~---~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 310 (445)
.++..-....+++.++.++-+++... ..|+...+ .+++.|.+ -++++++.++..=.. +|+-||..+++.+++.+
T Consensus 69 ~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irlllk-y~pq~~i~~l~npIq-YGiF~dqf~~c~l~D~f 145 (418)
T KOG4570|consen 69 RLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLLLK-YDPQKAIYTLVNPIQ-YGIFPDQFTFCLLMDSF 145 (418)
T ss_pred hhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHHHc-cChHHHHHHHhCcch-hccccchhhHHHHHHHH
Confidence 33333334455666666555554431 11221111 22222222 244455555554442 36666666666666666
Q ss_pred HhcCChHHHHHHHHHHhcC
Q 047840 311 ARAGMVEEAEKFIEEKMGG 329 (445)
Q Consensus 311 ~~~g~~~~A~~~~~~~~~~ 329 (445)
.+.+++.+|..+.-.|+..
T Consensus 146 lk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 146 LKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HhcccHHHHHHHHHHHHHH
Confidence 6666666666655555433
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.47 E-value=23 Score=34.98 Aligned_cols=143 Identities=8% Similarity=0.116 Sum_probs=79.0
Q ss_pred hhhcCCchHHHHHHHHHHhcCCCC---CcccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCC
Q 047840 5 YMQANFPKLSVFCYLDMLDMGFEP---NNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHK 81 (445)
Q Consensus 5 ~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (445)
+.+.+.+++|++..+... |..| -.......|..+...|+++ .|....-.|.. -+..-|...+..+...++
T Consensus 366 ll~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~-~Aas~~p~m~g----n~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 366 LLEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYD-EAASLCPKMLG----NNAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHH-HHHhhhHHHhc----chHHHHHHHHHHhccccc
Confidence 345667777777766543 3333 2234566677777777877 44444433332 245556666666666666
Q ss_pred HHHHHHHhccCCC-CChhhHHHHHHHHHcCCChHHHHHHhccCCC--------------------CChhhHHHHHHHHHh
Q 047840 82 MGTARALFDKSPD-RDVVTWTTMVDGYGKMGDFENARELFEKMPE--------------------RNAVSWSAIMAAYSR 140 (445)
Q Consensus 82 ~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------------------~~~~~~~~l~~~~~~ 140 (445)
......++=.... -++..|..++..+.. .+...-.++....+. .+...-..|+..|..
T Consensus 439 l~~Ia~~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~LYl~ 517 (846)
T KOG2066|consen 439 LTDIAPYLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHLYLY 517 (846)
T ss_pred cchhhccCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHHHHH
Confidence 5554444322222 255677777777766 333333333332210 122223447777778
Q ss_pred cCCHhHHHHHHHHHH
Q 047840 141 ISDFKEVLSLFRQMQ 155 (445)
Q Consensus 141 ~~~~~~a~~~~~~~~ 155 (445)
.+++..|++++-..+
T Consensus 518 d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 518 DNKYEKALPIYLKLQ 532 (846)
T ss_pred ccChHHHHHHHHhcc
Confidence 888888887776554
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=89.22 E-value=3 Score=32.97 Aligned_cols=31 Identities=10% Similarity=0.009 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHc
Q 047840 352 EVGNRVWRKLAEMGITDFSTHVLSYNIYKEA 382 (445)
Q Consensus 352 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 382 (445)
++|+.-|++++.++|+...++..++.+|...
T Consensus 52 edAisK~eeAL~I~P~~hdAlw~lGnA~ts~ 82 (186)
T PF06552_consen 52 EDAISKFEEALKINPNKHDALWCLGNAYTSL 82 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 3444444555556666555666666655554
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=89.21 E-value=0.52 Score=32.70 Aligned_cols=53 Identities=19% Similarity=0.061 Sum_probs=26.3
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--CchhHHHHHHHHHHcCC
Q 047840 332 GGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT--DFSTHVLSYNIYKEAGW 384 (445)
Q Consensus 332 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~ 384 (445)
+.|...-..+...+...|++++|++.+-.+++.++. +...-..++.++...|.
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 344455555555555666666666655555554443 34444555555555554
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.98 E-value=9.4 Score=36.36 Aligned_cols=73 Identities=15% Similarity=0.096 Sum_probs=32.6
Q ss_pred ccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 047840 175 HLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDR 254 (445)
Q Consensus 175 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 254 (445)
+.|+++.|.++..+.. +..-|..|.++..+.|++..|.+.|..... |..|+-.+...|+.+....+-..
T Consensus 649 ~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d-----~~~LlLl~t~~g~~~~l~~la~~ 717 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD-----LGSLLLLYTSSGNAEGLAVLASL 717 (794)
T ss_pred hcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc-----hhhhhhhhhhcCChhHHHHHHHH
Confidence 4455555544443332 333455555555555555555555544322 33344444444444433333333
Q ss_pred HHHc
Q 047840 255 MVKS 258 (445)
Q Consensus 255 m~~~ 258 (445)
..+.
T Consensus 718 ~~~~ 721 (794)
T KOG0276|consen 718 AKKQ 721 (794)
T ss_pred HHhh
Confidence 3333
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=88.94 E-value=14 Score=31.82 Aligned_cols=130 Identities=14% Similarity=0.188 Sum_probs=73.7
Q ss_pred hHHHHHHhhcCCC-----CChhhHHHHHHHHHhcC--ChHHHHHHHHHHHH-cCCCCCHHHHHHHHHHhhcCCcHHHHHH
Q 047840 214 VHSALSVFEGISN-----KDAGAWNAMISGVAMNG--DAKKSLELFDRMVK-SGTQPTETTFVAVLTTCTHAKMVRDGLN 285 (445)
Q Consensus 214 ~~~a~~~~~~~~~-----~~~~~~~~l~~~~~~~~--~~~~a~~~~~~m~~-~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 285 (445)
+.+|..+|+.... .|......+++...... ....-.++.+-+.. .|..++..+...++..++..+++..-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 4566666663222 24555555555544411 22222223333322 2355677777777778888888888777
Q ss_pred HHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHH-----HhcCCCCCCHHHHHHHHH
Q 047840 286 LFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEE-----KMGGLGGGDANVWGALLS 343 (445)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~~~~~~l~~ 343 (445)
+++......+...|...|..+++.....|+..-...+.++ +.+.++..+...-.++-.
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~ 286 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSE 286 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHH
Confidence 7777665333455677788888888888887766666654 233444444444444333
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=88.89 E-value=1.1 Score=25.37 Aligned_cols=29 Identities=24% Similarity=0.085 Sum_probs=24.6
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 370 STHVLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 370 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
.++..++..|...|++++|..++++..+.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46789999999999999999999988653
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=88.33 E-value=4.9 Score=36.94 Aligned_cols=123 Identities=12% Similarity=0.143 Sum_probs=73.7
Q ss_pred HhcCChHHHHH-HHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHH
Q 047840 240 AMNGDAKKSLE-LFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEE 318 (445)
Q Consensus 240 ~~~~~~~~a~~-~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 318 (445)
...|+...|-+ ++..+....-.|+.....+. .+...|+++.+.+.+..... -+.....+..+++......|++++
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHH
Confidence 34566555544 33334443334444433332 34567788888777776654 334455666777777777888888
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 047840 319 AEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT 367 (445)
Q Consensus 319 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 367 (445)
|..+-..|+...++ ++.+...........|-++++...++++....|+
T Consensus 376 a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 376 ALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 88887777766543 3333333333444556677777777777776665
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.15 E-value=13 Score=30.48 Aligned_cols=177 Identities=8% Similarity=0.082 Sum_probs=92.8
Q ss_pred hhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCCCChh-hHHHHH--HHHHhcCChHHHHHHHHHH
Q 047840 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAG-AWNAMI--SGVAMNGDAKKSLELFDRM 255 (445)
Q Consensus 179 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~l~--~~~~~~~~~~~a~~~~~~m 255 (445)
+.-|..-|.+..... |.-+.+||.|.-.+...|+++.|.+.|+...+-|+. -|..+= -++.--|++.-|.+-+.+.
T Consensus 81 ~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~f 159 (297)
T COG4785 81 RALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAF 159 (297)
T ss_pred HHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHH
Confidence 333443444444332 334677888888888888888888888877765443 222221 1233457888887776666
Q ss_pred HHcCC-CCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCC
Q 047840 256 VKSGT-QPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGD 334 (445)
Q Consensus 256 ~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 334 (445)
-+... .|-...|.-+. -..-++.+|..-+.+=.+ ..+..-|...+-.|. .|++. ...+++++.... ..+
T Consensus 160 YQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~----~~d~e~WG~~iV~~y-LgkiS-~e~l~~~~~a~a-~~n 229 (297)
T COG4785 160 YQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAE----KSDKEQWGWNIVEFY-LGKIS-EETLMERLKADA-TDN 229 (297)
T ss_pred HhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHH----hccHhhhhHHHHHHH-Hhhcc-HHHHHHHHHhhc-cch
Confidence 55422 22112222221 223455555543332222 234444443332222 12211 112233322211 111
Q ss_pred -------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 047840 335 -------ANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366 (445)
Q Consensus 335 -------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 366 (445)
..||--+.+-+...|+.++|..+|+-++....
T Consensus 230 ~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 230 TSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 24677788888889999999999998887554
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=88.14 E-value=0.94 Score=23.96 Aligned_cols=28 Identities=14% Similarity=-0.080 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 371 THVLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 371 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
++..++.++.+.|++++|.+.++++.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4667899999999999999999998764
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=88.00 E-value=13 Score=30.03 Aligned_cols=93 Identities=14% Similarity=0.039 Sum_probs=68.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHhcCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcC
Q 047840 306 VVDLLARAGMVEEAEKFIEEKMGGLGGGD--ANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG 383 (445)
Q Consensus 306 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 383 (445)
+...+..+|++++|...++..+......+ ..+-..|.+.....|.+++|+..++...+.+-. +.....-++++...|
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~-~~~~elrGDill~kg 173 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA-AIVAELRGDILLAKG 173 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH-HHHHHHhhhHHHHcC
Confidence 45678899999999999998764321111 123345667788999999999998876543322 233556788999999
Q ss_pred ChHHHHHHHHHHHhcC
Q 047840 384 WDMEANKVRKLISETG 399 (445)
Q Consensus 384 ~~~~A~~~~~~m~~~~ 399 (445)
+-++|..-|++....+
T Consensus 174 ~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 174 DKQEARAAYEKALESD 189 (207)
T ss_pred chHHHHHHHHHHHHcc
Confidence 9999999999887765
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=87.78 E-value=19 Score=31.74 Aligned_cols=134 Identities=19% Similarity=0.281 Sum_probs=72.3
Q ss_pred HhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--cC----ChhHHHHHHHHHHHcCC---CCchhhhhHHHHHHHccCCh
Q 047840 144 FKEVLSLFRQMQEVGMKPNESGLVSVLTACAH--LG----AITQGLWVHSYAKRYHL---EKNVILATAVVDMYSKCGHV 214 (445)
Q Consensus 144 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~ 214 (445)
+++.+.+++.|.+.|..-+..+|.+....... .. ....+..+|+.|++.-. .++...+..++.. ..+++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45566788888888888777777654433332 22 24456677777776531 1122223222211 11111
Q ss_pred HHHHHHhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHhhcCCc--HHHHHHHHHHh
Q 047840 215 HSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTE--TTFVAVLTTCTHAKM--VRDGLNLFENM 290 (445)
Q Consensus 215 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~~~--~~~a~~~~~~~ 290 (445)
+. -.+.+..+|+.+.+.|+..+. .....++..+..... ...+..+++.+
T Consensus 156 e~---------------------------l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l 208 (297)
T PF13170_consen 156 EE---------------------------LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNAL 208 (297)
T ss_pred HH---------------------------HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 10 134566677777776665432 333334333332222 34677778888
Q ss_pred HHhhCCCCChhHHHHHH
Q 047840 291 SAVYGVEPQLEHYACVV 307 (445)
Q Consensus 291 ~~~~~~~~~~~~~~~l~ 307 (445)
.+. |+++....|..+.
T Consensus 209 ~~~-~~kik~~~yp~lG 224 (297)
T PF13170_consen 209 KKN-GVKIKYMHYPTLG 224 (297)
T ss_pred HHc-CCccccccccHHH
Confidence 776 8887777766554
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=87.68 E-value=12 Score=29.48 Aligned_cols=121 Identities=13% Similarity=0.179 Sum_probs=80.3
Q ss_pred HHccCChHHHHHHhhcCCCCChhhHHHHH-----HHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHH--HhhcCCc
Q 047840 208 YSKCGHVHSALSVFEGISNKDAGAWNAMI-----SGVAMNGDAKKSLELFDRMVKSGTQPTET-TFVAVLT--TCTHAKM 279 (445)
Q Consensus 208 ~~~~g~~~~a~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~--~~~~~~~ 279 (445)
+.+.+..++|..-|.++.+.+...|..|. ....+.|+...|...|++.-.....|-.. -...|=. .+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 35677888888888888887666655543 34667888888999998887755444433 2222222 2557788
Q ss_pred HHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 047840 280 VRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGG 329 (445)
Q Consensus 280 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 329 (445)
+++.....+-+... +-+.-...-..|.-+-.+.|++.+|.+.|..+...
T Consensus 148 y~dV~srvepLa~d-~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 148 YDDVSSRVEPLAGD-GNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHHhhhccCC-CChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 88877777766643 32223333456666677889999999988887654
|
|
| >KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=87.50 E-value=4.9 Score=29.53 Aligned_cols=58 Identities=16% Similarity=0.051 Sum_probs=44.8
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHH
Q 047840 318 EAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLS 375 (445)
Q Consensus 318 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 375 (445)
+..+-++.+....+.|++.+...-+++|.+.+++..|.++|+-+...-++....|-.+
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~ 124 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYY 124 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 4556666777778899999999999999999999999999998887555433344433
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=87.48 E-value=1.8 Score=23.12 Aligned_cols=29 Identities=21% Similarity=-0.024 Sum_probs=25.4
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 370 STHVLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 370 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
.++..++..|...|++++|.+.|++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46888999999999999999999987653
|
... |
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=87.46 E-value=1.3 Score=22.73 Aligned_cols=25 Identities=20% Similarity=0.182 Sum_probs=10.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHh
Q 047840 340 ALLSACRIYGKIEVGNRVWRKLAEM 364 (445)
Q Consensus 340 ~l~~~~~~~g~~~~a~~~~~~~~~~ 364 (445)
.+...+...|+++.|...+++.++.
T Consensus 6 ~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 6 NLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 3344444444444444444444433
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=87.21 E-value=5.2 Score=34.46 Aligned_cols=60 Identities=17% Similarity=0.001 Sum_probs=46.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 047840 338 WGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISE 397 (445)
Q Consensus 338 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 397 (445)
.+.+-.+|.+.++++.|+++.+.++...|+++.-+...+-+|.+.|.+..|..-++...+
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 455556777888888888888888888888887777778888888888888876665544
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.86 E-value=19 Score=31.01 Aligned_cols=59 Identities=12% Similarity=-0.004 Sum_probs=51.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHH
Q 047840 338 WGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLIS 396 (445)
Q Consensus 338 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 396 (445)
++.....|...|.+.+|.++.++++..+|-+...+..+...+...|+--.|.+-++++.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 45566788999999999999999999999988899999999999999888877777664
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.82 E-value=11 Score=31.62 Aligned_cols=95 Identities=8% Similarity=0.004 Sum_probs=44.0
Q ss_pred HHhhcCCcHHHHHHHHHHhHHhh-----CCCCChhHH-----------HHHHHHHHhcCChHHHHHHHHHHhcCCCCCCH
Q 047840 272 TTCTHAKMVRDGLNLFENMSAVY-----GVEPQLEHY-----------ACVVDLLARAGMVEEAEKFIEEKMGGLGGGDA 335 (445)
Q Consensus 272 ~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~-----------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 335 (445)
+-+.+.|++.+|...|.++.... .-+|...-| ..+..++...|++-++++...+++... +.|+
T Consensus 186 N~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~-~~nv 264 (329)
T KOG0545|consen 186 NRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHH-PGNV 264 (329)
T ss_pred hhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcC-CchH
Confidence 34666777777777776654210 112322211 112222233444444544444444433 3444
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 047840 336 NVWGALLSACRIYGKIEVGNRVWRKLAEMGIT 367 (445)
Q Consensus 336 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 367 (445)
..|-.-..+.+..-+.++|..-|..+++++|.
T Consensus 265 KA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 265 KAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 44444444444444455555555555554443
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.97 E-value=36 Score=33.21 Aligned_cols=274 Identities=11% Similarity=0.053 Sum_probs=151.2
Q ss_pred hHHHHHHhccCCCC-ChhhHHHHHHH-----HHhcCCHhHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHccC--
Q 047840 113 FENARELFEKMPER-NAVSWSAIMAA-----YSRISDFKEVLSLFRQMQE-------VGMKPNESGLVSVLTACAHLG-- 177 (445)
Q Consensus 113 ~~~A~~~~~~~~~~-~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~-------~~~~p~~~~~~~l~~~~~~~~-- 177 (445)
...|.++++..... +...-..+... +....+.+.|+..|+...+ .| ++.....+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 45677777776653 33333333222 3456789999999988866 44 3334556666666543
Q ss_pred ---ChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHc-cCChHHHHHHhhcCCCC-ChhhHHHHHHHHHh----cCChHHH
Q 047840 178 ---AITQGLWVHSYAKRYHLEKNVILATAVVDMYSK-CGHVHSALSVFEGISNK-DAGAWNAMISGVAM----NGDAKKS 248 (445)
Q Consensus 178 ---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a 248 (445)
+...|..++...-+.| .|+.......+..... ..+...|..+|...... ...++-.+..+|.. ..+...|
T Consensus 305 ~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A 383 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELA 383 (552)
T ss_pred ccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHH
Confidence 5667888888888887 3344333222222222 24577888888776543 44444444333332 3467888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHH---Hh----cCChHHHHH
Q 047840 249 LELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLL---AR----AGMVEEAEK 321 (445)
Q Consensus 249 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~----~g~~~~A~~ 321 (445)
..++++..+.| .|...--...+..+.. +.++.+...+..+... +.+.....-..++... .. ..+.+.+..
T Consensus 384 ~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~-g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 460 (552)
T KOG1550|consen 384 FAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAEL-GYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFS 460 (552)
T ss_pred HHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHh-hhhHHhhHHHHHHHhccccccccccccchhHHHH
Confidence 88888888887 3332222233333444 6666666666655543 3322111111111111 11 224556666
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHc----CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHc---CChHHHHHHHHH
Q 047840 322 FIEEKMGGLGGGDANVWGALLSACRIY----GKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEA---GWDMEANKVRKL 394 (445)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~ 394 (445)
.+......| +......+...|... .+++.|...+......+ ......++..+..- ..+..|.++++.
T Consensus 461 ~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~ 534 (552)
T KOG1550|consen 461 LYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQ 534 (552)
T ss_pred HHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHH
Confidence 666664333 555556666655433 24677777777777766 44555555554442 115677777777
Q ss_pred HHhcC
Q 047840 395 ISETG 399 (445)
Q Consensus 395 m~~~~ 399 (445)
....+
T Consensus 535 ~~~~~ 539 (552)
T KOG1550|consen 535 ASEED 539 (552)
T ss_pred HHhcC
Confidence 66543
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=85.51 E-value=12 Score=30.27 Aligned_cols=75 Identities=13% Similarity=0.029 Sum_probs=48.3
Q ss_pred CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHc---CCCCchhhhhHHHHHHHccCChHHHH
Q 047840 143 DFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRY---HLEKNVILATAVVDMYSKCGHVHSAL 218 (445)
Q Consensus 143 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~ 218 (445)
.-+.|.+.|-++...+.--++.....+.. |....+.+++.+++....+. +-.+|+.++.+|+..+.+.|+++.|.
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAt-yY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALAT-YYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHH-HHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 34667777777766554434444444444 44467778888887777653 22567777778888888777777764
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=85.37 E-value=25 Score=30.92 Aligned_cols=121 Identities=12% Similarity=0.206 Sum_probs=66.2
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc--CC----cHHHHHHHHHHhHHhhCCCC--ChhHHHHHHHHHHhcCCh
Q 047840 245 AKKSLELFDRMVKSGTQPTETTFVAVLTTCTH--AK----MVRDGLNLFENMSAVYGVEP--QLEHYACVVDLLARAGMV 316 (445)
Q Consensus 245 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~ 316 (445)
+++.+.+++.|.+.|+.-+..+|.+....... .. ....|..+|+.|++.+.+-. +-.++..++.. ..+++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34556677888888887777666553332222 22 34567788888887754432 33344444322 33332
Q ss_pred ----HHHHHHHHHHhcCCCCCCH--HHHHHHHHHHHHcCC--hHHHHHHHHHHHHhCCC
Q 047840 317 ----EEAEKFIEEKMGGLGGGDA--NVWGALLSACRIYGK--IEVGNRVWRKLAEMGIT 367 (445)
Q Consensus 317 ----~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~ 367 (445)
+.++.+|+.+.+.|+..+- .....++..+-.... ...+.++++.+.+.+..
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~k 214 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVK 214 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCc
Confidence 4566677777776655432 233333332221111 34667777777776654
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.71 E-value=7.1 Score=31.97 Aligned_cols=77 Identities=14% Similarity=0.112 Sum_probs=55.6
Q ss_pred HHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCC--CCCCHHHHHHHHH
Q 047840 266 TFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGL--GGGDANVWGALLS 343 (445)
Q Consensus 266 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~ 343 (445)
|.+..++.+.+.+.+.+++...+.-.+. -+.+..+-..+++.+|-.|++++|..-++-..... ..+-...|..++.
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 4455667788889999999988877753 24455666778899999999999998877664332 2344566777776
Q ss_pred H
Q 047840 344 A 344 (445)
Q Consensus 344 ~ 344 (445)
+
T Consensus 81 ~ 81 (273)
T COG4455 81 C 81 (273)
T ss_pred H
Confidence 5
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=84.45 E-value=2.5 Score=24.55 Aligned_cols=27 Identities=22% Similarity=0.120 Sum_probs=21.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcC
Q 047840 373 VLSYNIYKEAGWDMEANKVRKLISETG 399 (445)
Q Consensus 373 ~~l~~~~~~~g~~~~A~~~~~~m~~~~ 399 (445)
..++.+|...|+.+.|.++++++...|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 457888888999999998888887543
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=84.36 E-value=5.3 Score=33.18 Aligned_cols=118 Identities=10% Similarity=-0.017 Sum_probs=74.1
Q ss_pred hhcCCcHHHHHHHHHHhHHhhCCCCChhH-HHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHH-HHHHHHHHHHcCCh
Q 047840 274 CTHAKMVRDGLNLFENMSAVYGVEPQLEH-YACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANV-WGALLSACRIYGKI 351 (445)
Q Consensus 274 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~ 351 (445)
|.....+..|...|.+.. -+.|+..+ |+.=+.++.+..+++.+..--.+.++. .||..- .-.+..++.....+
T Consensus 20 ~f~~k~y~~ai~~y~raI---~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAI---CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred ccchhhhchHHHHHHHHH---hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhccc
Confidence 666677888888887777 44677644 456666777888888888777776643 455543 34445566677888
Q ss_pred HHHHHHHHHHHHhCCC-----CchhHHHHHHHHHHcCChHHHHHHHHHHH
Q 047840 352 EVGNRVWRKLAEMGIT-----DFSTHVLSYNIYKEAGWDMEANKVRKLIS 396 (445)
Q Consensus 352 ~~a~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 396 (445)
++|+..+.++.++... ...+...|..+--..-...+..++.+...
T Consensus 95 ~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~E 144 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQELE 144 (284)
T ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHhh
Confidence 9999999888663321 23344445444433344445555555443
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=84.26 E-value=6.1 Score=37.40 Aligned_cols=99 Identities=11% Similarity=0.029 Sum_probs=62.7
Q ss_pred cCCcHHHHHHHHHHhHHhhCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHH
Q 047840 276 HAKMVRDGLNLFENMSAVYGVEPQ--LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEV 353 (445)
Q Consensus 276 ~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 353 (445)
-.|+...|...+...... .|- ....-.|.....+.|...+|-.++.+.+... ...+.++..+.+++....+++.
T Consensus 619 ~~gn~~~a~~cl~~a~~~---~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~ 694 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNL---APLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISG 694 (886)
T ss_pred ecCCcHHHHHHHHHHhcc---ChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHH
Confidence 346677777776665532 332 1223344555556666677777776655444 4455667777777777778888
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHH
Q 047840 354 GNRVWRKLAEMGITDFSTHVLSYNI 378 (445)
Q Consensus 354 a~~~~~~~~~~~~~~~~~~~~l~~~ 378 (445)
|++.|+.+.+.+|.++.+-..|...
T Consensus 695 a~~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 695 ALEAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred HHHHHHHHHhcCCCChhhHHHHHHH
Confidence 8888888888887777666655443
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.15 E-value=1.2 Score=40.77 Aligned_cols=99 Identities=10% Similarity=0.009 Sum_probs=71.8
Q ss_pred HHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHH-HHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcC
Q 047840 271 LTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHY-ACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYG 349 (445)
Q Consensus 271 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 349 (445)
+..+...+.++.|..++.++.+ +.||...| ..=..++.+.+++..|+.=+..+++.. +-....|..=..++...+
T Consensus 11 an~~l~~~~fd~avdlysKaI~---ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIE---LDPNCAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHh---cCCcceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhHH
Confidence 4455667888889999988884 47765444 333367788888888888777776655 344556666667778888
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHH
Q 047840 350 KIEVGNRVWRKLAEMGITDFSTHV 373 (445)
Q Consensus 350 ~~~~a~~~~~~~~~~~~~~~~~~~ 373 (445)
.+.+|...|+......|+++.+-.
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~~r 110 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDATR 110 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHHHH
Confidence 888999999998888888775443
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.04 E-value=26 Score=29.89 Aligned_cols=89 Identities=12% Similarity=0.153 Sum_probs=49.2
Q ss_pred hHHHHHHHccCChHHHHHHhhcCCCC---------------ChhhHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCCHH
Q 047840 202 TAVVDMYSKCGHVHSALSVFEGISNK---------------DAGAWNAMISGVAMNGDAKKSLELFDRMVKS-GTQPTET 265 (445)
Q Consensus 202 ~~l~~~~~~~g~~~~a~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~ 265 (445)
..|...|...|.+.+...+++++... -...|..=|+.|-...+-.+...+|++...- ..-|.+.
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPl 228 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPL 228 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchH
Confidence 34555566666666666665554321 1235666677777777777777777765442 2334444
Q ss_pred HHHHHHHHh-----hcCCcHHHHHHHHHHhH
Q 047840 266 TFVAVLTTC-----THAKMVRDGLNLFENMS 291 (445)
Q Consensus 266 ~~~~l~~~~-----~~~~~~~~a~~~~~~~~ 291 (445)
... +++-| .+.|++++|..-|=++-
T Consensus 229 ImG-vIRECGGKMHlreg~fe~AhTDFFEAF 258 (440)
T KOG1464|consen 229 IMG-VIRECGGKMHLREGEFEKAHTDFFEAF 258 (440)
T ss_pred HHh-HHHHcCCccccccchHHHHHhHHHHHH
Confidence 433 33333 35677777765444443
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=83.69 E-value=20 Score=30.98 Aligned_cols=68 Identities=12% Similarity=-0.151 Sum_probs=54.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhH
Q 047840 304 ACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTH 372 (445)
Q Consensus 304 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 372 (445)
+.+-.+|.+.++++.|+++.+.+.... +.++.-+.--.-.|.+.|.+..|..-++..++.-|+++.+-
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~ 252 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE 252 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence 445667888999999999999888766 66677777777788899999999999999999888876443
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.26 E-value=29 Score=32.35 Aligned_cols=103 Identities=12% Similarity=0.030 Sum_probs=68.9
Q ss_pred HHHccCChHHHHHHhhcCCC---C---------ChhhHHHHHHHHHhcCChHHHHHHHHHHHH-------cCCCCCH---
Q 047840 207 MYSKCGHVHSALSVFEGISN---K---------DAGAWNAMISGVAMNGDAKKSLELFDRMVK-------SGTQPTE--- 264 (445)
Q Consensus 207 ~~~~~g~~~~a~~~~~~~~~---~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-------~~~~p~~--- 264 (445)
.+.-.|++.+|.+++....- + ....||.|.-.+.+.|.+..+..+|.+..+ .|++|..
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 34556888888888754321 1 223456676667777777777777766553 3544432
Q ss_pred --------HHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHh
Q 047840 265 --------TTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLAR 312 (445)
Q Consensus 265 --------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 312 (445)
.+||. .-.|...|++-.|.+.|...... +..++..|-.|.++|..
T Consensus 329 ls~nks~eilYNc-G~~~Lh~grPl~AfqCf~~av~v--fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 329 LSQNKSMEILYNC-GLLYLHSGRPLLAFQCFQKAVHV--FHRNPRLWLRLAECCIM 381 (696)
T ss_pred hhcccchhhHHhh-hHHHHhcCCcHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHH
Confidence 23333 23466789999999999998874 46778899999888863
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=83.24 E-value=3.5 Score=25.16 Aligned_cols=32 Identities=19% Similarity=0.118 Sum_probs=24.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCchh
Q 047840 340 ALLSACRIYGKIEVGNRVWRKLAEMGITDFST 371 (445)
Q Consensus 340 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 371 (445)
.+.-++.+.|++++|.+..+.+++..|++..+
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 35567788899999999999999999987643
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.02 E-value=6.9 Score=32.04 Aligned_cols=75 Identities=13% Similarity=0.013 Sum_probs=57.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---chhHHHHHH
Q 047840 302 HYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITD---FSTHVLSYN 377 (445)
Q Consensus 302 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~~ 377 (445)
|.+.-++.+.+.+++.+|+...+.-++.. +.|...-..+++.++-.|++++|..-++-.-++.|.+ ...|..++.
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 34455667778899999999988877666 6677778888999999999999999999888888863 334555543
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=82.14 E-value=3.7 Score=23.88 Aligned_cols=25 Identities=24% Similarity=0.461 Sum_probs=17.6
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHcC
Q 047840 134 IMAAYSRISDFKEVLSLFRQMQEVG 158 (445)
Q Consensus 134 l~~~~~~~~~~~~a~~~~~~~~~~~ 158 (445)
|..+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 5667777777777777777776543
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=81.35 E-value=16 Score=25.71 Aligned_cols=59 Identities=19% Similarity=0.259 Sum_probs=38.6
Q ss_pred HHHHcCCChHHHHHHhccCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHH
Q 047840 105 DGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGL 166 (445)
Q Consensus 105 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 166 (445)
..+...|++++|..+.+.+.-||...|.+|.. .+.|..+.+..-+.+|...| .|....|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~F 105 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTF 105 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 45667788888888888777777777766543 45666666666666666655 4444443
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=80.16 E-value=15 Score=30.48 Aligned_cols=65 Identities=12% Similarity=-0.025 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHcCCh-------HHHHHHHHHHHHhC--C----CCchhHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 047840 336 NVWGALLSACRIYGKI-------EVGNRVWRKLAEMG--I----TDFSTHVLSYNIYKEAGWDMEANKVRKLISETGM 400 (445)
Q Consensus 336 ~~~~~l~~~~~~~g~~-------~~a~~~~~~~~~~~--~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 400 (445)
..+..+...|...|+. ..|.+.|+++.+.. | +.......++....+.|+.++|.+.|.++...+-
T Consensus 119 ~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 119 GLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 3455555666666664 34555555555422 2 1345666788999999999999999999886543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 62.9 bits (151), Expect = 1e-10
Identities = 25/197 (12%), Positives = 55/197 (27%), Gaps = 7/197 (3%)
Query: 136 AAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLE 195
R+ + L ++ P E L +L ++ + L
Sbjct: 65 QVEPRLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLS 124
Query: 196 KNVILATAVVDMYSKCGHVHSALSVFEGISNK-------DAGAWNAMISGVAMNGDAKKS 248
A + A + + +NA++ G A G K+
Sbjct: 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKEL 184
Query: 249 LELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVD 308
+ + + +G P ++ A L + + G++ Q A ++
Sbjct: 185 VYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLS 244
Query: 309 LLARAGMVEEAEKFIEE 325
RA +++ K
Sbjct: 245 EEDRATVLKAVHKVKPT 261
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 52.9 bits (125), Expect = 2e-07
Identities = 17/148 (11%), Positives = 44/148 (29%), Gaps = 13/148 (8%)
Query: 28 PNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARA 87
P L++ L+ + + + + L ++ A
Sbjct: 90 PWEEQLARLLQEAPGKLSLD-VEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHH 148
Query: 88 LFD-------KSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPER----NAVSWSAIMA 136
L K + + ++ G+ + G F+ + + + + +S++A +
Sbjct: 149 LLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQ 208
Query: 137 AYSRISDFKEVLS-LFRQMQEVGMKPNE 163
R + QM + G+K
Sbjct: 209 CMGRQDQDAGTIERCLEQMSQEGLKLQA 236
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 51.4 bits (121), Expect = 4e-07
Identities = 11/98 (11%), Positives = 27/98 (27%), Gaps = 7/98 (7%)
Query: 94 DRDVVTWTTMVDGYGKMGDFENARELFEKMPER-------NAVSWSAIMAAYSRISDFKE 146
A L + ++A+M ++R FKE
Sbjct: 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKE 183
Query: 147 VLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLW 184
++ + +++ G+ P+ + L +
Sbjct: 184 LVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIE 221
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.8 bits (110), Expect = 1e-05
Identities = 70/450 (15%), Positives = 143/450 (31%), Gaps = 121/450 (26%)
Query: 30 NYTF--PPLIKACVILGPLENFGMFVHAHVVKFGFGE--DPFVVSSLLEFYSLVHKMGTA 85
NY F P+ P M++ + + + VS L + L
Sbjct: 90 NYKFLMSPIKTEQ--RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL------R 141
Query: 86 RALFDKSPDRDVVTWTTMVDG---YGK---MGDFENARELFEKMPERNAVSWSAIMAAYS 139
+AL + P ++V+ +DG GK D + ++ KM + W + S
Sbjct: 142 QALLELRPAKNVL-----IDGVLGSGKTWVALDVCLSYKVQCKMD--FKIFWLNLKNCNS 194
Query: 140 RISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGL-WVHSYAKRYHLEK-- 196
+ + + L Q+ PN + H I + + + +R K
Sbjct: 195 PETVLEMLQKLLYQI-----DPNWTSRSD------HSSNIKLRIHSIQAELRRLLKSKPY 243
Query: 197 -NVILATAVVDMYSKCGHVHSA--LSVFEG-----ISNKDAGAWNAMISG----VAMNGD 244
N +L V+ +V +A + F ++ + + + + ++++
Sbjct: 244 ENCLL---VLL------NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH 294
Query: 245 AK-----KSLELFDRMVKSGTQ--PTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVE 297
+ + L + + Q P E A+ +RDGL ++N
Sbjct: 295 SMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN-------- 346
Query: 298 PQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRV 357
+H C ++ IE + L + + + ++
Sbjct: 347 --WKHVNC-----------DKLTTIIESSLNVL---EPAEYRKMFDRLSVFPP-----SA 385
Query: 358 WRKLAEMGITDFSTHVLSYNIYKEAGW-DMEANKVR----KLISETGMKKKPGCSVIEVN 412
I T +LS + W D+ + V KL + ++K+P S I +
Sbjct: 386 H-------IP---TILLS--LI----WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP 429
Query: 413 GVVEEFLA-GDNR---HAQAGEIYRVIHSF 438
+ E +N H + Y + +F
Sbjct: 430 SIYLELKVKLENEYALHRSIVDHYNIPKTF 459
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Length = 493 | Back alignment and structure |
|---|
Score = 41.0 bits (95), Expect = 7e-04
Identities = 16/96 (16%), Positives = 36/96 (37%), Gaps = 5/96 (5%)
Query: 65 DPFVVSSLLEFYSLVHKMGTARALFDK---SPDRDVVTWTTMVDGYGKMGDFENARELFE 121
F+ + +E+Y T +F + ++GD ENAR LF+
Sbjct: 320 HVFIYCAFIEYY-ATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFK 378
Query: 122 KMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEV 157
++ + + + W +++ + + L Q +
Sbjct: 379 RLEKTSRM-WDSMIEYEFMVGSMELFRELVDQKMDA 413
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 445 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.95 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.94 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.93 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.91 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.9 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.89 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.88 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.88 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.87 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.87 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.86 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.86 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.86 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.84 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.84 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.83 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.83 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.83 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.82 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.81 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.81 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.8 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.8 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.79 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.76 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.76 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.76 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.74 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.73 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.73 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.72 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.72 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.7 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.7 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.69 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.68 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.68 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.68 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.67 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.67 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.67 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.66 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.66 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.66 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.66 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.65 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.65 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.64 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.64 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.64 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.63 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.63 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.6 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.59 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.56 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.54 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.54 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.52 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.52 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.51 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.51 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.5 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.49 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.49 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.49 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.49 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.47 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.47 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.45 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.44 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.42 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.41 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.39 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.38 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.32 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.31 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.3 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.29 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.28 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.28 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.28 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.28 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.27 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.24 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.24 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.23 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.23 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.23 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.22 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.2 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.16 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.14 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.13 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.11 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.1 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.1 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.08 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.07 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.07 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.06 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.04 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.04 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.04 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.03 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.03 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.02 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.01 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.01 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.01 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.01 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.99 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.99 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.98 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.97 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.97 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.97 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.96 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.96 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.96 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.95 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.93 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.92 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.91 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.9 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.85 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.84 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.83 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.82 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.81 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.8 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.8 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.8 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.8 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.8 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.79 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.79 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.79 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.78 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.78 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.77 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.77 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.76 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.75 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.75 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.75 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.74 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.73 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.71 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.71 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.7 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.68 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.66 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.65 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.65 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.64 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.63 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.6 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.59 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.59 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.59 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.58 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.58 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.58 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.58 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.58 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.57 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.57 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.55 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.54 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.52 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.52 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.52 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.49 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.49 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.44 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.4 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.39 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.37 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.37 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.37 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.37 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.35 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.35 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.32 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.29 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.27 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.24 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.22 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.17 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.15 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.14 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.07 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.04 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.99 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.95 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.92 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.9 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.89 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.85 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.76 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.73 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.65 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.6 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.55 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.53 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.47 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.43 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.42 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 97.37 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.25 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.17 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.15 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 97.08 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.05 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 96.96 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.86 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.85 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.84 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.8 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.78 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 96.49 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.47 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.97 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.92 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 95.82 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.7 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.54 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 95.26 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 95.06 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 94.6 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 94.56 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 94.41 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 94.21 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 93.77 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 93.36 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 93.16 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 93.11 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 92.74 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 92.41 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 92.12 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 92.1 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 91.0 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 90.94 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 90.3 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 90.0 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 89.89 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 89.81 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 89.26 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 89.11 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 89.03 | |
| 1wdy_A | 285 | 2-5A-dependent ribonuclease; hydrolase, RNA-bindin | 88.33 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 88.33 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 88.03 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 87.06 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 85.84 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 85.26 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 84.59 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 84.33 | |
| 3kea_A | 285 | K1L; tropism, ANK repeat, viral protein; 2.30A {Va | 83.17 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 82.89 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 82.47 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 81.63 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 81.28 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 80.46 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-37 Score=301.50 Aligned_cols=387 Identities=12% Similarity=0.033 Sum_probs=321.5
Q ss_pred hhchhhcCCchHHHHHHHHHHhcCCCCCcccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCC
Q 047840 2 IRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHK 81 (445)
Q Consensus 2 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (445)
+..|.+.|++++|+.+|++|.. ..|+..++..++.+|...|+++ .|..+++.+.. .+++..+++.++.+|.+.|+
T Consensus 91 ~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~ 165 (597)
T 2xpi_A 91 RHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYA-RAKCLLTKEDL--YNRSSACRYLAAFCLVKLYD 165 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHH-HHHHHHHHTCG--GGTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHH-HHHHHHHHHhc--cccchhHHHHHHHHHHHHhh
Confidence 5678899999999999999986 4488889999999999999999 89999987754 36788899999999999999
Q ss_pred HHHHHHHhccCCCC-------------------ChhhHHHHHHHHHcCCChHHHHHHhccCCC-----------------
Q 047840 82 MGTARALFDKSPDR-------------------DVVTWTTMVDGYGKMGDFENARELFEKMPE----------------- 125 (445)
Q Consensus 82 ~~~a~~~~~~~~~~-------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------------- 125 (445)
+++|..+|+++... +..+|+.++.+|.+.|++++|.++|+++.+
T Consensus 166 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 245 (597)
T 2xpi_A 166 WQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHL 245 (597)
T ss_dssp HHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhc
Confidence 99999999965443 377899999999999999888888877631
Q ss_pred ---------------------------------------------------------CChhhHHHHHHHHHhcCCHhHHH
Q 047840 126 ---------------------------------------------------------RNAVSWSAIMAAYSRISDFKEVL 148 (445)
Q Consensus 126 ---------------------------------------------------------~~~~~~~~l~~~~~~~~~~~~a~ 148 (445)
++..+|+.++..|.+.|++++|+
T Consensus 246 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 325 (597)
T 2xpi_A 246 LTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVL 325 (597)
T ss_dssp SCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHH
Confidence 34556667777777777777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCC--
Q 047840 149 SLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN-- 226 (445)
Q Consensus 149 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-- 226 (445)
++|+++.+.+ +.+..++..++.++.+.|++++|..+++++.+.. +.+..+++.++.+|.+.|++++|.++|+++.+
T Consensus 326 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 403 (597)
T 2xpi_A 326 AITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD 403 (597)
T ss_dssp HHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 7777777654 2366677777777777777777777777777554 55678888888999999999999999987643
Q ss_pred -CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHH
Q 047840 227 -KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYAC 305 (445)
Q Consensus 227 -~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 305 (445)
.+..+|+.++..|.+.|++++|+++|+++.+.+ +.+..++..++.+|.+.|++++|.++|+++.+. .+.+..+|..
T Consensus 404 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~ 480 (597)
T 2xpi_A 404 PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQYDPLLLNE 480 (597)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHH
Confidence 467789999999999999999999999988764 347788888999999999999999999999864 2446788999
Q ss_pred HHHHHHhcCChHHHHHHHHHHhcC----CCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 047840 306 VVDLLARAGMVEEAEKFIEEKMGG----LGGGD--ANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIY 379 (445)
Q Consensus 306 l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 379 (445)
++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.+.++++.+.+|+++.++..++.+|
T Consensus 481 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 560 (597)
T 2xpi_A 481 LGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVY 560 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 999999999999999999988765 55676 788999999999999999999999999999998889999999999
Q ss_pred HHcCChHHHHHHHHHHHhc
Q 047840 380 KEAGWDMEANKVRKLISET 398 (445)
Q Consensus 380 ~~~g~~~~A~~~~~~m~~~ 398 (445)
.+.|++++|.+.++++.+.
T Consensus 561 ~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 561 LHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhc
Confidence 9999999999999988764
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-35 Score=285.95 Aligned_cols=376 Identities=13% Similarity=0.019 Sum_probs=322.6
Q ss_pred CCchHHHHHHHHHHhcCCCCCcccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 047840 9 NFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARAL 88 (445)
Q Consensus 9 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 88 (445)
|.+..+...+..+. .++...|+.++..+.+.|+++ .|..+++.+.. ..|+..++..++.+|.+.|++++|..+
T Consensus 67 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~-~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~ 139 (597)
T 2xpi_A 67 GSFLKERNAQNTDS----LSREDYLRLWRHDALMQQQYK-CAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCL 139 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccCCCCCccccch----HHHHHHHHHHHHHHHHccCch-HHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHH
Confidence 44444444444332 257788999999999999999 99999999986 456888999999999999999999999
Q ss_pred hccCC--CCChhhHHHHHHHHHcCCChHHHHHHhccCCCC-------------------ChhhHHHHHHHHHhcCCHhHH
Q 047840 89 FDKSP--DRDVVTWTTMVDGYGKMGDFENARELFEKMPER-------------------NAVSWSAIMAAYSRISDFKEV 147 (445)
Q Consensus 89 ~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~l~~~~~~~~~~~~a 147 (445)
|+++. .++..+++.++.+|.+.|++++|.++|+++... +..+|+.++.+|.+.|++++|
T Consensus 140 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 219 (597)
T 2xpi_A 140 LTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRA 219 (597)
T ss_dssp HHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHH
Confidence 99984 578999999999999999999999999965433 478999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHH--------------------------------------HHHHHccCChhHHHHHHHHH
Q 047840 148 LSLFRQMQEVGMKPNESGLVSV--------------------------------------LTACAHLGAITQGLWVHSYA 189 (445)
Q Consensus 148 ~~~~~~~~~~~~~p~~~~~~~l--------------------------------------~~~~~~~~~~~~a~~~~~~~ 189 (445)
++.|++|.+.+.. +...+..+ +..|.+.|++++|.++|+++
T Consensus 220 ~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 298 (597)
T 2xpi_A 220 KECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSI 298 (597)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHh
Confidence 9999999886422 33333322 44566789999999999999
Q ss_pred HHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 047840 190 KRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN---KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETT 266 (445)
Q Consensus 190 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 266 (445)
.+. +++..+++.++.+|.+.|++++|..+|+++.+ .+..+++.++.++.+.|++++|..+++++.... +.+..+
T Consensus 299 ~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~ 375 (597)
T 2xpi_A 299 NGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVT 375 (597)
T ss_dssp TTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHH
T ss_pred hcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHH
Confidence 876 58899999999999999999999999998853 477899999999999999999999999998763 457889
Q ss_pred HHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 047840 267 FVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACR 346 (445)
Q Consensus 267 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 346 (445)
+..++..|.+.|++++|.++|+++.+. .+.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|..++.+|.
T Consensus 376 ~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 452 (597)
T 2xpi_A 376 WLAVGIYYLCVNKISEARRYFSKSSTM--DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHM 452 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 999999999999999999999999864 23457899999999999999999999999998876 678899999999999
Q ss_pred HcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 347 IYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 347 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
+.|++++|.++|+++.+..|.++.++..++.+|.+.|++++|.++++++.+.
T Consensus 453 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 504 (597)
T 2xpi_A 453 QLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLL 504 (597)
T ss_dssp HHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999876
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-30 Score=236.00 Aligned_cols=372 Identities=10% Similarity=0.043 Sum_probs=321.7
Q ss_pred hchhhcCCchHHHHHHHHHHhcCCCCCc-ccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCC
Q 047840 3 RGYMQANFPKLSVFCYLDMLDMGFEPNN-YTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHK 81 (445)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (445)
..+.+.|++++|+..++.+.+.. |+. ..+..+...+...|+++ .+...++...+.. +.+..+|..+...|.+.|+
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~-~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLD-RSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 35678999999999999998754 654 45556667778899999 9999999888754 5677899999999999999
Q ss_pred HHHHHHHhccCCC--C-ChhhHHHHHHHHHcCCChHHHHHHhccCCC--C-ChhhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 047840 82 MGTARALFDKSPD--R-DVVTWTTMVDGYGKMGDFENARELFEKMPE--R-NAVSWSAIMAAYSRISDFKEVLSLFRQMQ 155 (445)
Q Consensus 82 ~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 155 (445)
+++|...|+++.+ | +..+|..+..++.+.|++++|.+.|+++.+ | +...+..+...+...|++++|.+.|+++.
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 9999999998753 4 556799999999999999999999998864 4 45567788889999999999999999998
Q ss_pred HcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCC---CChhhH
Q 047840 156 EVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN---KDAGAW 232 (445)
Q Consensus 156 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~ 232 (445)
+.. +.+..++..+...+...|++++|...|+++.+.+ +.+...+..+...+...|++++|...|++... .+..++
T Consensus 163 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 240 (388)
T 1w3b_A 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVH 240 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHH
Confidence 863 3367889999999999999999999999999886 55678888999999999999999999986643 467789
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHh
Q 047840 233 NAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLAR 312 (445)
Q Consensus 233 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 312 (445)
..+...+...|++++|+..|+++.+.+. .+..++..+...+.+.|++++|...++++.+. .+.+..++..+...+..
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHH
Confidence 9999999999999999999999988642 35778899999999999999999999999874 35678889999999999
Q ss_pred cCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCC
Q 047840 313 AGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGW 384 (445)
Q Consensus 313 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 384 (445)
.|++++|...++++.+.. +.+..++..++.++.+.|++++|...|+++++..|.++.++..++.++...|+
T Consensus 318 ~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred cCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 999999999999998765 66788999999999999999999999999999999999999999998887764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-28 Score=225.24 Aligned_cols=354 Identities=12% Similarity=0.056 Sum_probs=311.3
Q ss_pred HHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHcCCCh
Q 047840 37 IKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPD---RDVVTWTTMVDGYGKMGDF 113 (445)
Q Consensus 37 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~ 113 (445)
...+.+.|+++ .|...++.+.+.. +.+...+..+...+...|++++|...++...+ .+..+|..+..++.+.|++
T Consensus 6 a~~~~~~g~~~-~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFE-AAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHH-HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHH-HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 45677889999 9999999888764 34556777888889999999999999987643 4677899999999999999
Q ss_pred HHHHHHhccCCC--C-ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHH
Q 047840 114 ENARELFEKMPE--R-NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAK 190 (445)
Q Consensus 114 ~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 190 (445)
++|...|+++.. | +..+|..+..++.+.|++++|.+.|+++.+.+ +.+...+..+...+...|++++|...|+++.
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 999999998864 4 56679999999999999999999999998864 2245677788889999999999999999999
Q ss_pred HcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 047840 191 RYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN---KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTF 267 (445)
Q Consensus 191 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 267 (445)
+.. +.+..++..+..++.+.|++++|...|+++.. .+...|..+...+...|++++|+..+++..... +.+..++
T Consensus 163 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 240 (388)
T 1w3b_A 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVH 240 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHH
Confidence 875 55678899999999999999999999998754 356788899999999999999999999998863 2367888
Q ss_pred HHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 047840 268 VAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRI 347 (445)
Q Consensus 268 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 347 (445)
..+...+...|++++|...++++.+. .+.+..++..+..++.+.|++++|...|+++.+.. +.+..++..+...+..
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHH
Confidence 99999999999999999999999864 23357789999999999999999999999998876 7789999999999999
Q ss_pred cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 348 YGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 348 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
.|++++|.+.++++++..|+++.++..++.+|.+.|++++|.+.++++.+.
T Consensus 318 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999998763
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-29 Score=236.69 Aligned_cols=199 Identities=13% Similarity=0.121 Sum_probs=124.1
Q ss_pred HHHHhccCCC----C-ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC---------hhH
Q 047840 116 ARELFEKMPE----R-NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA---------ITQ 181 (445)
Q Consensus 116 A~~~~~~~~~----~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~---------~~~ 181 (445)
+..+.+++.+ + ....++.+|.+|++.|++++|+++|++|.+.|+.||..||+++|.+|++.+. ++.
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 4444555543 1 2335788889999999999999999999988999999999999999886654 577
Q ss_pred HHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 047840 182 GLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQ 261 (445)
Q Consensus 182 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 261 (445)
|.++|++|...|+.||..+|+++|.+|++.|++++|.+ +|++|.+.|+.
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~-------------------------------l~~~M~~~g~~ 137 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFD-------------------------------MVKQMKAFGIQ 137 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHH-------------------------------HHHHHHHTTCC
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHH-------------------------------HHHHHHHcCCC
Confidence 88888888888888887777777666666655555554 55555555555
Q ss_pred CCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHH
Q 047840 262 PTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGAL 341 (445)
Q Consensus 262 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 341 (445)
||..||+.+|.+|++.|++++|.++|++|.+. |+.||..+|++|+.+|++.|++++|.+++++|.+.+..|+..||+.+
T Consensus 138 Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l 216 (501)
T 4g26_A 138 PRLRSYGPALFGFCRKGDADKAYEVDAHMVES-EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMI 216 (501)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHH
T ss_pred CccceehHHHHHHHHCCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHH
Confidence 55555555555555555555555555555544 55555555555555555555555555555555555555555555555
Q ss_pred HHHHH
Q 047840 342 LSACR 346 (445)
Q Consensus 342 ~~~~~ 346 (445)
+..|.
T Consensus 217 ~~~F~ 221 (501)
T 4g26_A 217 EEWFK 221 (501)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55443
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-29 Score=235.78 Aligned_cols=183 Identities=15% Similarity=0.191 Sum_probs=149.4
Q ss_pred hhHHHHHHHHHcCCChHHHHHHhccCC----CCChhhHHHHHHHHHhcCC---------HhHHHHHHHHHHHcCCCCCHH
Q 047840 98 VTWTTMVDGYGKMGDFENARELFEKMP----ERNAVSWSAIMAAYSRISD---------FKEVLSLFRQMQEVGMKPNES 164 (445)
Q Consensus 98 ~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~---------~~~a~~~~~~~~~~~~~p~~~ 164 (445)
..++.+|++|++.|++++|+++|++|. .||..+||+||.+|.+.+. .++|.++|++|...|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 468899999999999999999999997 4899999999999987765 688999999999999999999
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCC
Q 047840 165 GLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGD 244 (445)
Q Consensus 165 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~ 244 (445)
||+++|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.| +
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g-------------------------------~ 155 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKG-------------------------------D 155 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT-------------------------------C
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCC-------------------------------C
Confidence 999999999999999999999999999999998887777666655554 5
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHh
Q 047840 245 AKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLAR 312 (445)
Q Consensus 245 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 312 (445)
+++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++++|.+. +..|+..||+.++..|+.
T Consensus 156 ~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 156 ADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhc
Confidence 5566666666666666666666666666666666666666666666655 666666666666666654
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-25 Score=213.64 Aligned_cols=388 Identities=8% Similarity=-0.052 Sum_probs=309.8
Q ss_pred hchhhcCCchHHHHHHHHHHhcCCCCCcccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCH
Q 047840 3 RGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKM 82 (445)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (445)
..+.+.|++++|+..|+++.+.+ |+..+|..+..++...|+++ .|...++.+.+.+ +.+...+..+..++...|++
T Consensus 14 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 89 (514)
T 2gw1_A 14 NQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLK-KVVEMSTKALELK-PDYSKVLLRRASANEGLGKF 89 (514)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHH-HHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHH-HHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhH
Confidence 35778999999999999999866 89999999999999999999 9999999999875 45667899999999999999
Q ss_pred HHHHHHhccCCC---CChhhHHHHHHHHHcCCChHHHHH--------------------------------------Hhc
Q 047840 83 GTARALFDKSPD---RDVVTWTTMVDGYGKMGDFENARE--------------------------------------LFE 121 (445)
Q Consensus 83 ~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~--------------------------------------~~~ 121 (445)
++|...|+++.. ++......++..+........+.+ .+.
T Consensus 90 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (514)
T 2gw1_A 90 ADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFG 169 (514)
T ss_dssp HHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHh
Confidence 999999987643 233333333333322211111111 111
Q ss_pred cCCC---------C-ChhhHHHHHHHHHh---cCCHhHHHHHHHHHHH-----cCCC--------CCHHHHHHHHHHHHc
Q 047840 122 KMPE---------R-NAVSWSAIMAAYSR---ISDFKEVLSLFRQMQE-----VGMK--------PNESGLVSVLTACAH 175 (445)
Q Consensus 122 ~~~~---------~-~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~~--------p~~~~~~~l~~~~~~ 175 (445)
.... | +...+......+.. .|++++|+..|+++.. ..-. .+..++..+...+..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (514)
T 2gw1_A 170 IFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFL 249 (514)
T ss_dssp TSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHH
Confidence 1110 1 14444445555554 8999999999999887 3111 235677888899999
Q ss_pred cCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCC---CChhhHHHHHHHHHhcCChHHHHHHH
Q 047840 176 LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN---KDAGAWNAMISGVAMNGDAKKSLELF 252 (445)
Q Consensus 176 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~ 252 (445)
.|++++|...++++.+.... ..++..+..++...|++++|...++++.. .+..++..+...+...|++++|+..+
T Consensus 250 ~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 327 (514)
T 2gw1_A 250 KNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDF 327 (514)
T ss_dssp SSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999988633 88888999999999999999999987654 36678899999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCC-
Q 047840 253 DRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLG- 331 (445)
Q Consensus 253 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~- 331 (445)
+++.+... .+...+..+...+...|++++|...++.+.+. .+.+...+..+...+...|++++|...++++.+...
T Consensus 328 ~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 404 (514)
T 2gw1_A 328 DKAKELDP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENK 404 (514)
T ss_dssp HHHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 99988643 35678888899999999999999999999874 234567888899999999999999999999876431
Q ss_pred CCC----HHHHHHHHHHHHH---cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 047840 332 GGD----ANVWGALLSACRI---YGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETG 399 (445)
Q Consensus 332 ~~~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 399 (445)
.++ ..++..+...+.. .|++++|...++++++..|.++.++..++.+|.+.|++++|.+.+++..+..
T Consensus 405 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 405 LDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp SSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 122 4489999999999 9999999999999999999999999999999999999999999999988754
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.1e-25 Score=209.40 Aligned_cols=362 Identities=10% Similarity=0.003 Sum_probs=286.7
Q ss_pred ccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHhccCCC---CChhhHHHHHHHH
Q 047840 31 YTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPD---RDVVTWTTMVDGY 107 (445)
Q Consensus 31 ~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~ 107 (445)
..+......+...|+++ .|...|+.+.+.. |+..++..+..++...|++++|...|+++.+ .+..+|..+..++
T Consensus 7 ~~~~~~g~~~~~~g~~~-~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYD-DAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHTSCHH-HHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHH-HHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 34666778889999999 9999999999975 6899999999999999999999999997653 3667899999999
Q ss_pred HcCCChHHHHHHhccCCC---CChhhHHHHHHHHHhcCCHhHHHHHHHHHH-----------------------------
Q 047840 108 GKMGDFENARELFEKMPE---RNAVSWSAIMAAYSRISDFKEVLSLFRQMQ----------------------------- 155 (445)
Q Consensus 108 ~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----------------------------- 155 (445)
.+.|++++|...|+++.. ++......++..+........+.+.+..+.
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 999999999999998753 233333344433333222222222221110
Q ss_pred ------HcCC---------CCCHHHHHHHHHHHHc---cCChhHHHHHHHHHHH-----cCC--------CCchhhhhHH
Q 047840 156 ------EVGM---------KPNESGLVSVLTACAH---LGAITQGLWVHSYAKR-----YHL--------EKNVILATAV 204 (445)
Q Consensus 156 ------~~~~---------~p~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~~~l 204 (445)
.... +.+...+......+.. .|++++|...++++.+ ... +.+..++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 0000 1124444555554544 8999999999999988 311 2345688889
Q ss_pred HHHHHccCChHHHHHHhhcCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHH
Q 047840 205 VDMYSKCGHVHSALSVFEGISN--KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRD 282 (445)
Q Consensus 205 ~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 282 (445)
..++...|++++|...|+++.. |+...+..+...+...|++++|+..++++.... +.+...+..+...+...|++++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 322 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQ 322 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHH
Confidence 9999999999999999987753 347788889999999999999999999998864 3366788889999999999999
Q ss_pred HHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 047840 283 GLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLA 362 (445)
Q Consensus 283 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 362 (445)
|...++.+... .+.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.
T Consensus 323 A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 399 (514)
T 2gw1_A 323 AGKDFDKAKEL--DPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAI 399 (514)
T ss_dssp HHHHHHHHHHT--CSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999864 24457788889999999999999999999988765 5677889999999999999999999999999
Q ss_pred HhCCCCch------hHHHHHHHHHH---cCChHHHHHHHHHHHhcC
Q 047840 363 EMGITDFS------THVLSYNIYKE---AGWDMEANKVRKLISETG 399 (445)
Q Consensus 363 ~~~~~~~~------~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~ 399 (445)
+..|.++. ++..++.++.. .|++++|.+.++++.+..
T Consensus 400 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~ 445 (514)
T 2gw1_A 400 ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD 445 (514)
T ss_dssp HHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC
T ss_pred HhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC
Confidence 98887654 89999999999 999999999999987653
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-24 Score=202.38 Aligned_cols=323 Identities=14% Similarity=0.074 Sum_probs=232.2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHcCCChHHHHHHhccCCC---CChhhHHHHHHHH
Q 047840 65 DPFVVSSLLEFYSLVHKMGTARALFDKSPD---RDVVTWTTMVDGYGKMGDFENARELFEKMPE---RNAVSWSAIMAAY 138 (445)
Q Consensus 65 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~ 138 (445)
+...+..+...+.+.|++++|..+|+++.+ .+..+|..+..++...|++++|...|+++.+ .+..++..+...|
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 104 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLL 104 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 344455555555555666666555554432 2445555566666666666666666665543 2455666677777
Q ss_pred HhcCCHhHHHHHHHHHHHcCCCCC-H---HHHHHH------------HHHHHccCChhHHHHHHHHHHHcCCCCchhhhh
Q 047840 139 SRISDFKEVLSLFRQMQEVGMKPN-E---SGLVSV------------LTACAHLGAITQGLWVHSYAKRYHLEKNVILAT 202 (445)
Q Consensus 139 ~~~~~~~~a~~~~~~~~~~~~~p~-~---~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 202 (445)
.+.|++++|.+.|+++... .|+ . ..+..+ ...+...|++++|...++++.+.. +.+..++.
T Consensus 105 ~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 181 (450)
T 2y4t_A 105 LKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRE 181 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHH
Confidence 7777777777777777653 233 2 333333 344777788888888888887764 45667777
Q ss_pred HHHHHHHccCChHHHHHHhhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH---------
Q 047840 203 AVVDMYSKCGHVHSALSVFEGISN---KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAV--------- 270 (445)
Q Consensus 203 ~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l--------- 270 (445)
.++.+|.+.|++++|...|+++.+ .+..+|..+...|...|++++|+..|+++..... .+...+..+
T Consensus 182 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~ 260 (450)
T 2y4t_A 182 LRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQVKKLNKL 260 (450)
T ss_dssp HHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHHH
Confidence 788888888888888888877643 4677888888888888888999888888876532 233334333
Q ss_pred ---HHHhhcCCcHHHHHHHHHHhHHhhCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 047840 271 ---LTTCTHAKMVRDGLNLFENMSAVYGVEPQ-----LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALL 342 (445)
Q Consensus 271 ---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 342 (445)
...+.+.|++++|...|+.+... .|+ ...+..+..++.+.|++++|...++++.+.. +.+..+|..++
T Consensus 261 ~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~ 336 (450)
T 2y4t_A 261 IESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRA 336 (450)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 67888999999999999999865 444 4477888999999999999999999988765 56789999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHH------------HHHcC-----ChHHHHHHHHHH
Q 047840 343 SACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNI------------YKEAG-----WDMEANKVRKLI 395 (445)
Q Consensus 343 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~------------~~~~g-----~~~~A~~~~~~m 395 (445)
.+|...|++++|...++++++..|.++.++..++.+ |...| +.+++.+.++++
T Consensus 337 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~ 406 (450)
T 2y4t_A 337 EAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKL 406 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHH
Confidence 999999999999999999999999999888888844 44445 555667777653
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.94 E-value=6.1e-24 Score=198.52 Aligned_cols=365 Identities=11% Similarity=0.040 Sum_probs=282.4
Q ss_pred hHHHHHHHHHHhcCCCCCcccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHhcc
Q 047840 12 KLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDK 91 (445)
Q Consensus 12 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 91 (445)
..+...+....... +.+...+..+...+.+.|+++ .|..+++.+.+.. +.+..++..+..++...|++++|...|++
T Consensus 9 ~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~-~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 85 (450)
T 2y4t_A 9 SGVDLGTENLYFQS-MADVEKHLELGKKLLAAGQLA-DALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTK 85 (450)
T ss_dssp ---------------CHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cccccccccccccc-HHHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34445555555432 345667888889999999999 9999999998864 45688899999999999999999999998
Q ss_pred CCC---CChhhHHHHHHHHHcCCChHHHHHHhccCCC--CC-h---hhHHHH------------HHHHHhcCCHhHHHHH
Q 047840 92 SPD---RDVVTWTTMVDGYGKMGDFENARELFEKMPE--RN-A---VSWSAI------------MAAYSRISDFKEVLSL 150 (445)
Q Consensus 92 ~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~---~~~~~l------------~~~~~~~~~~~~a~~~ 150 (445)
+.+ .+..++..+..+|.+.|++++|...|+++.. |+ . ..+..+ ...+...|++++|+..
T Consensus 86 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 165 (450)
T 2y4t_A 86 VIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAF 165 (450)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 754 3577889999999999999999999999875 32 3 555555 4458899999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCC--C-
Q 047840 151 FRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN--K- 227 (445)
Q Consensus 151 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~- 227 (445)
|+++.+.. +.+...+..+..++...|++++|...++++.+.. +.+..++..++.+|...|++++|...|+++.. |
T Consensus 166 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 243 (450)
T 2y4t_A 166 LDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD 243 (450)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 99998764 4478889999999999999999999999998875 56788999999999999999999999998754 2
Q ss_pred ChhhHHHH------------HHHHHhcCChHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHhhcCCcHHHHHHHHHHh
Q 047840 228 DAGAWNAM------------ISGVAMNGDAKKSLELFDRMVKSGTQPT-----ETTFVAVLTTCTHAKMVRDGLNLFENM 290 (445)
Q Consensus 228 ~~~~~~~l------------~~~~~~~~~~~~a~~~~~~m~~~~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~ 290 (445)
+...+..+ ...+...|++++|+..|+++.+.. |+ ...+..+...+.+.|++++|...++.+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 321 (450)
T 2y4t_A 244 HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEV 321 (450)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 44445444 788999999999999999998853 44 347888889999999999999999999
Q ss_pred HHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHH------------HHHcC-----ChHH
Q 047840 291 SAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSA------------CRIYG-----KIEV 353 (445)
Q Consensus 291 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~------------~~~~g-----~~~~ 353 (445)
... .+.+...|..+..+|...|++++|...++++.+.. +.+...+..+..+ |...| +.++
T Consensus 322 ~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~ 398 (450)
T 2y4t_A 322 LQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQE 398 (450)
T ss_dssp HHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTH
T ss_pred HHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHH
Confidence 864 24468899999999999999999999999998765 5567777777643 33334 5677
Q ss_pred HHHHHHH-HHHhCCCCch----------hHHHHHHHHHHcCChH
Q 047840 354 GNRVWRK-LAEMGITDFS----------THVLSYNIYKEAGWDM 386 (445)
Q Consensus 354 a~~~~~~-~~~~~~~~~~----------~~~~l~~~~~~~g~~~ 386 (445)
+.+.+++ .++..|++.. .+..+..+|...|+.+
T Consensus 399 ~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~ 442 (450)
T 2y4t_A 399 IIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPE 442 (450)
T ss_dssp HHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGG
T ss_pred HHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHH
Confidence 8888887 6667775321 3344555555555543
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.93 E-value=4.3e-23 Score=197.27 Aligned_cols=386 Identities=7% Similarity=-0.041 Sum_probs=293.6
Q ss_pred hchhhcCCchHHHHHHHHHHhcCCCCCcccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCH
Q 047840 3 RGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKM 82 (445)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (445)
..+.+.|++++|+..|+++.+.. +.+..+|..+..++...|+++ .|...++.+.+.. +.+...+..+..++...|++
T Consensus 33 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~ 109 (537)
T 3fp2_A 33 NHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLE-KVIEFTTKALEIK-PDHSKALLRRASANESLGNF 109 (537)
T ss_dssp HHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH-HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHH-HHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCH
Confidence 35778999999999999998855 346678888899999999999 9999999998875 44677888999999999999
Q ss_pred HHHHHHhccCCCCChhhHHHHHHHHHcCCChHHHHHHhccC-------------------------------------CC
Q 047840 83 GTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKM-------------------------------------PE 125 (445)
Q Consensus 83 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------------------------------------~~ 125 (445)
++|...|+.+ ..++......+..+...+...+|...++.+ ..
T Consensus 110 ~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (537)
T 3fp2_A 110 TDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSN 188 (537)
T ss_dssp HHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCS
T ss_pred HHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccc
Confidence 9999999633 222222222222333333334444444443 22
Q ss_pred CChh---hHHHHHHHHHh--------cCCHhHHHHHHHHHHHcCCCCC--------HHHHHHHHHHHHccCChhHHHHHH
Q 047840 126 RNAV---SWSAIMAAYSR--------ISDFKEVLSLFRQMQEVGMKPN--------ESGLVSVLTACAHLGAITQGLWVH 186 (445)
Q Consensus 126 ~~~~---~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~p~--------~~~~~~l~~~~~~~~~~~~a~~~~ 186 (445)
.+.. ....+...+.. .|++++|..+|+++.+.. |+ ..++..+...+...|++++|...+
T Consensus 189 ~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~ 266 (537)
T 3fp2_A 189 YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLL 266 (537)
T ss_dssp SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 2111 22233322222 247899999999988753 43 234666777888899999999999
Q ss_pred HHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 047840 187 SYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN---KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPT 263 (445)
Q Consensus 187 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 263 (445)
+++.+.. |+...+..+...+...|++++|...|+++.. .+..++..+...+...|++++|+..++++.+... .+
T Consensus 267 ~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~ 343 (537)
T 3fp2_A 267 QESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP-EN 343 (537)
T ss_dssp HHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TC
T ss_pred HHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CC
Confidence 9999875 4478888899999999999999999987653 4677899999999999999999999999988643 25
Q ss_pred HHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCC-----CCCCHHHH
Q 047840 264 ETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGL-----GGGDANVW 338 (445)
Q Consensus 264 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~ 338 (445)
...+..+...+...|++++|...++.+.+. .+.+...+..+...+...|++++|...++++.+.. .......+
T Consensus 344 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 421 (537)
T 3fp2_A 344 VYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPL 421 (537)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHH
Confidence 677888889999999999999999999875 24456788889999999999999999999976542 11122335
Q ss_pred HHHHHHHHHc----------CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 047840 339 GALLSACRIY----------GKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETG 399 (445)
Q Consensus 339 ~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 399 (445)
......+... |++++|...++++++..|.++.++..++.+|.+.|++++|.+.+++..+..
T Consensus 422 ~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 422 IGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 5556777777 999999999999999999999999999999999999999999999988754
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.91 E-value=7.3e-21 Score=171.80 Aligned_cols=291 Identities=11% Similarity=0.023 Sum_probs=157.3
Q ss_pred HHHHHHHHcCCChHHHHHHhccCCC---CChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 047840 101 TTMVDGYGKMGDFENARELFEKMPE---RNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLG 177 (445)
Q Consensus 101 ~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 177 (445)
..+...+...|++++|...|+++.+ .+..++..+...+...|++++|+..++++.+.. +.+...+..+...+...|
T Consensus 7 ~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 85 (359)
T 3ieg_A 7 LELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQG 85 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcC
Confidence 3333444444444444444443321 123344444444444555555555554444432 113344444444444555
Q ss_pred ChhHHHHHHHHHHHcCCC---CchhhhhHH------------HHHHHccCChHHHHHHhhcCCC---CChhhHHHHHHHH
Q 047840 178 AITQGLWVHSYAKRYHLE---KNVILATAV------------VDMYSKCGHVHSALSVFEGISN---KDAGAWNAMISGV 239 (445)
Q Consensus 178 ~~~~a~~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~ 239 (445)
++++|...++++.+.. + .+...+..+ ...+...|++++|...++++.+ .+...+..+...+
T Consensus 86 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (359)
T 3ieg_A 86 KLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECF 164 (359)
T ss_dssp CHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 5555555554444432 1 122222222 3555566666666666655432 2445555666666
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCC-hhHHH------------HH
Q 047840 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ-LEHYA------------CV 306 (445)
Q Consensus 240 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~------------~l 306 (445)
...|++++|+..++++.+.. +.+..++..+...+...|++++|...++.+.+. .|+ ...+. .+
T Consensus 165 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~~ 240 (359)
T 3ieg_A 165 IKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQVKKLNKLIES 240 (359)
T ss_dssp HHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CccchHHHHHHHHHHHHHHHHHH
Confidence 66666666666666665542 234555666666666666666666666666643 222 22221 22
Q ss_pred HHHHHhcCChHHHHHHHHHHhcCCCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHc
Q 047840 307 VDLLARAGMVEEAEKFIEEKMGGLGGGDA----NVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEA 382 (445)
Q Consensus 307 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 382 (445)
...+.+.|++++|...++++.+.. +.+. ..+..+..++...|++++|...++++++..|.++.++..++.++...
T Consensus 241 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (359)
T 3ieg_A 241 AEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIE 319 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc
Confidence 455666777777777777766544 2233 22444566677777777777777777777777777777777777777
Q ss_pred CChHHHHHHHHHHHhc
Q 047840 383 GWDMEANKVRKLISET 398 (445)
Q Consensus 383 g~~~~A~~~~~~m~~~ 398 (445)
|++++|.+.+++..+.
T Consensus 320 g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 320 EMYDEAIQDYEAAQEH 335 (359)
T ss_dssp TCHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHhc
Confidence 7777777777766543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.1e-21 Score=175.42 Aligned_cols=308 Identities=12% Similarity=0.047 Sum_probs=219.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHcCCChHHHHHHhccCCC--C-ChhhHHHHHHHHHhc
Q 047840 68 VVSSLLEFYSLVHKMGTARALFDKSPD---RDVVTWTTMVDGYGKMGDFENARELFEKMPE--R-NAVSWSAIMAAYSRI 141 (445)
Q Consensus 68 ~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~ 141 (445)
.+..+...+...|++++|...|+++.+ .+..++..+..++...|++++|...|+++.+ | +...|..+...+...
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 84 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQ 84 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHc
Confidence 344444455555555555555554322 2344555555555555555555555555442 2 455666667777777
Q ss_pred CCHhHHHHHHHHHHHcCCCC----CHHHHHHH------------HHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHH
Q 047840 142 SDFKEVLSLFRQMQEVGMKP----NESGLVSV------------LTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVV 205 (445)
Q Consensus 142 ~~~~~a~~~~~~~~~~~~~p----~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 205 (445)
|++++|...|++..+. .| +...+..+ ...+...|++++|...++++.+.. +.+..++..+.
T Consensus 85 ~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~ 161 (359)
T 3ieg_A 85 GKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRA 161 (359)
T ss_dssp TCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 7777777777776653 33 23333333 466778888888888888887765 45667777888
Q ss_pred HHHHccCChHHHHHHhhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH------------HH
Q 047840 206 DMYSKCGHVHSALSVFEGISN---KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFV------------AV 270 (445)
Q Consensus 206 ~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~------------~l 270 (445)
.++...|++++|...++++.. .+..++..+...+...|++++|...+++..+.... +...+. .+
T Consensus 162 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~ 240 (359)
T 3ieg_A 162 ECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIES 240 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHHHHHH
Confidence 888888888888888876644 35667888888888889999999999888775322 333322 23
Q ss_pred HHHhhcCCcHHHHHHHHHHhHHhhCCCCC-h----hHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 047840 271 LTTCTHAKMVRDGLNLFENMSAVYGVEPQ-L----EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSAC 345 (445)
Q Consensus 271 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 345 (445)
...+.+.|++++|...++.+... .|+ . ..+..+..++...|++++|...+++..+.. +.+..++..+...+
T Consensus 241 a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 316 (359)
T 3ieg_A 241 AEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAY 316 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 55688899999999999999875 343 2 234557788999999999999999998765 66889999999999
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcC
Q 047840 346 RIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG 383 (445)
Q Consensus 346 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 383 (445)
...|++++|.+.|+++++..|+++.++..+..+....+
T Consensus 317 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 317 LIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLK 354 (359)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 99999999999999999999999888888877765443
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.89 E-value=5e-21 Score=173.73 Aligned_cols=259 Identities=10% Similarity=-0.046 Sum_probs=178.7
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHc
Q 047840 131 WSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSK 210 (445)
Q Consensus 131 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 210 (445)
+..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+..+|..
T Consensus 67 ~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~ 144 (368)
T 1fch_A 67 PFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTN 144 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 4444444444444444444444444432 2233444444444444444444444444444443 2334444444444444
Q ss_pred cCChHHHHHHhhcCCCC---ChhhHH---------------HHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 047840 211 CGHVHSALSVFEGISNK---DAGAWN---------------AMISGVAMNGDAKKSLELFDRMVKSGTQP-TETTFVAVL 271 (445)
Q Consensus 211 ~g~~~~a~~~~~~~~~~---~~~~~~---------------~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~ 271 (445)
.|++++|...|+++... +...+. ..+..+...|++++|+..++++.+..... +..++..+.
T Consensus 145 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~ 224 (368)
T 1fch_A 145 ESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLG 224 (368)
T ss_dssp TTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHH
Confidence 44444444444433221 111111 02233348899999999999998864321 578899999
Q ss_pred HHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCh
Q 047840 272 TTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKI 351 (445)
Q Consensus 272 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 351 (445)
..+...|++++|...++++... .+.+...+..+..++...|++++|...++++.+.. +.+..++..+..++...|++
T Consensus 225 ~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~ 301 (368)
T 1fch_A 225 VLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAH 301 (368)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCH
Confidence 9999999999999999999864 24457889999999999999999999999998766 66789999999999999999
Q ss_pred HHHHHHHHHHHHhCCCC-----------chhHHHHHHHHHHcCChHHHHHHHHH
Q 047840 352 EVGNRVWRKLAEMGITD-----------FSTHVLSYNIYKEAGWDMEANKVRKL 394 (445)
Q Consensus 352 ~~a~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~ 394 (445)
++|...|+++++..|.+ ..++..++.+|...|++++|..++++
T Consensus 302 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 302 REAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 99999999999988876 78899999999999999999988763
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.88 E-value=2.9e-20 Score=177.60 Aligned_cols=363 Identities=10% Similarity=0.020 Sum_probs=272.2
Q ss_pred hchhhcCCchHHHHHHHHHHhcCCCCCcccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhH-------------
Q 047840 3 RGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVV------------- 69 (445)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------------- 69 (445)
..|.+.|++++|+..|+++.+.+ +.+..++..+..++...|+++ .|...++ .......+.....
T Consensus 67 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~-~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~ 143 (537)
T 3fp2_A 67 ACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFT-DAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAM 143 (537)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH-HHHHHHH-HHC-----------CHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHH-HHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHH
Confidence 46788999999999999999865 335678888899999999999 8999886 3322211111110
Q ss_pred --------------------HHHHHHHHhcCCHHHHHHHhccCCCCChh---hHHHHHHHHHcC--------CChHHHHH
Q 047840 70 --------------------SSLLEFYSLVHKMGTARALFDKSPDRDVV---TWTTMVDGYGKM--------GDFENARE 118 (445)
Q Consensus 70 --------------------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~--------g~~~~A~~ 118 (445)
...+..+....+.+.+...+......+.. ....+...+... |++++|..
T Consensus 144 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~ 223 (537)
T 3fp2_A 144 KVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTD 223 (537)
T ss_dssp HHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 11112222233333333333333332221 233333333222 47899999
Q ss_pred HhccCCC--CC--------hhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHH
Q 047840 119 LFEKMPE--RN--------AVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSY 188 (445)
Q Consensus 119 ~~~~~~~--~~--------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 188 (445)
+|+++.+ |+ ..++..+...+...|++++|...|++.... .|+...+..+...+...|++++|...+++
T Consensus 224 ~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 301 (537)
T 3fp2_A 224 MYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQK 301 (537)
T ss_dssp HHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHH
T ss_pred HHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 9998875 32 235677778899999999999999999885 46688899999999999999999999999
Q ss_pred HHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 047840 189 AKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN---KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTET 265 (445)
Q Consensus 189 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 265 (445)
+.+.. +.+..++..+..++...|++++|...|+++.. .+...+..+...+...|++++|+..++++.+.. +.+..
T Consensus 302 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 379 (537)
T 3fp2_A 302 AVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPE 379 (537)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTH
T ss_pred HhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChH
Confidence 99876 55778899999999999999999999987753 466789999999999999999999999998874 33567
Q ss_pred HHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCC----hhHHHHHHHHHHhc----------CChHHHHHHHHHHhcCCC
Q 047840 266 TFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ----LEHYACVVDLLARA----------GMVEEAEKFIEEKMGGLG 331 (445)
Q Consensus 266 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~ 331 (445)
.+..+...+...|++++|...++.+.+...-.++ ...+..+...+... |++++|...|+++.+..
T Consensus 380 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~- 458 (537)
T 3fp2_A 380 VPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD- 458 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-
Confidence 8888899999999999999999998865211111 12234455677777 99999999999998776
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHH
Q 047840 332 GGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHV 373 (445)
Q Consensus 332 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 373 (445)
+.+..++..+...+...|++++|.+.|+++.+..|.+.....
T Consensus 459 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 459 PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 677899999999999999999999999999999998765543
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.2e-20 Score=166.64 Aligned_cols=286 Identities=9% Similarity=0.006 Sum_probs=195.2
Q ss_pred ChhhHHHHHHHHHcCCChHHHHHHhccCCC---CChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 047840 96 DVVTWTTMVDGYGKMGDFENARELFEKMPE---RNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTA 172 (445)
Q Consensus 96 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 172 (445)
+...+..+...+...|++++|..+|+++.. .+...+..++..+...|++++|...++++.+.. +.+...+..+...
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 99 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCY 99 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHH
Confidence 334444555555555555555555555432 234445556666666677777777777666542 2245566666666
Q ss_pred HHccC-ChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCC---CChhhHHHHHHHHHhcCChHHH
Q 047840 173 CAHLG-AITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN---KDAGAWNAMISGVAMNGDAKKS 248 (445)
Q Consensus 173 ~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a 248 (445)
+...| ++++|...++++.+.. +.+...+..+..++...|++++|...|+++.. .+...+..+...+...|++++|
T Consensus 100 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (330)
T 3hym_B 100 YLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLA 178 (330)
T ss_dssp HHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHH
Confidence 66666 6777777777666554 33455666666777777777777777665543 2445666677777778888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhC-------CCCChhHHHHHHHHHHhcCChHHHHH
Q 047840 249 LELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG-------VEPQLEHYACVVDLLARAGMVEEAEK 321 (445)
Q Consensus 249 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~ 321 (445)
...+++..+.. +.+...+..+...+...|++++|...++++..... .+.....+..+..+|...|++++|..
T Consensus 179 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 257 (330)
T 3hym_B 179 ERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALD 257 (330)
T ss_dssp HHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 88888777653 33566777777778888888888888887775421 13335677888888888888888888
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHH-HHcCCh
Q 047840 322 FIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIY-KEAGWD 385 (445)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~ 385 (445)
.+++..+.. +.+..++..+...+...|++++|.+.++++.+..|+++.++..++.++ ...|+.
T Consensus 258 ~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 258 YHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 888887665 556778888888888888888888888888888888888888888877 345553
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-19 Score=161.55 Aligned_cols=268 Identities=13% Similarity=0.010 Sum_probs=232.6
Q ss_pred CChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHH
Q 047840 126 RNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVV 205 (445)
Q Consensus 126 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 205 (445)
.+...+..+...+...|++++|+++|+++.+.. +.+...+..++..+...|++++|..+++++.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 466678888899999999999999999998764 3356677778888999999999999999999875 55788899999
Q ss_pred HHHHccC-ChHHHHHHhhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHH
Q 047840 206 DMYSKCG-HVHSALSVFEGISN---KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVR 281 (445)
Q Consensus 206 ~~~~~~g-~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 281 (445)
..+...| ++++|...|++... .+...|..+...+...|++++|+..++++.+.... +...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHH
Confidence 9999999 99999999987654 35678999999999999999999999999887433 4566777888999999999
Q ss_pred HHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCC--------CCCCHHHHHHHHHHHHHcCChHH
Q 047840 282 DGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGL--------GGGDANVWGALLSACRIYGKIEV 353 (445)
Q Consensus 282 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~ 353 (445)
+|...++.+... .+.+...+..+...+...|++++|...++++.+.. .+.+..++..+...+...|++++
T Consensus 177 ~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 177 LAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 999999999863 34557888999999999999999999999886531 13446789999999999999999
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 354 GNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 354 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
|...++++++..|.++.++..++.++.+.|++++|.+.+++..+.
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999999977543
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.87 E-value=1e-18 Score=164.73 Aligned_cols=360 Identities=13% Similarity=-0.007 Sum_probs=193.2
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHhhh----cCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHh----cCCHHHHH
Q 047840 15 VFCYLDMLDMGFEPNNYTFPPLIKACVI----LGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSL----VHKMGTAR 86 (445)
Q Consensus 15 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~ 86 (445)
+..++...+.| ++..+..+...+.. .++++ .|..+++...+.| +...+..|...|.. .+++++|.
T Consensus 27 ~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~-~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~ 99 (490)
T 2xm6_A 27 LEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLT-QAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAV 99 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH-HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHH-HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 44444444432 44444455555544 45555 5666666555543 34455555555555 55666666
Q ss_pred HHhccCCCC-ChhhHHHHHHHHHc----CCChHHHHHHhccCCCC-ChhhHHHHHHHHHh----cCCHhHHHHHHHHHHH
Q 047840 87 ALFDKSPDR-DVVTWTTMVDGYGK----MGDFENARELFEKMPER-NAVSWSAIMAAYSR----ISDFKEVLSLFRQMQE 156 (445)
Q Consensus 87 ~~~~~~~~~-~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~ 156 (445)
..|++..+. ++..+..|...|.. .+++++|...|++..+. ++..+..+...|.. .+++++|++.|++..+
T Consensus 100 ~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~ 179 (490)
T 2xm6_A 100 IWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAE 179 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 666554332 44455555555555 55666666666555432 44455555555554 5566666666666555
Q ss_pred cCCCCCHHHHHHHHHHHHc----cCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHc----cCChHHHHHHhhcCCC-C
Q 047840 157 VGMKPNESGLVSVLTACAH----LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSK----CGHVHSALSVFEGISN-K 227 (445)
Q Consensus 157 ~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~-~ 227 (445)
.| +...+..+...|.. .++.++|..+|++..+.| +...+..+...|.. .+++++|..+|++..+ .
T Consensus 180 ~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~ 253 (490)
T 2xm6_A 180 QG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG 253 (490)
T ss_dssp TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT
T ss_pred CC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 43 44555555555554 556666666666655544 33444555555554 5566666666655433 2
Q ss_pred ChhhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcC-----CcHHHHHHHHHHhHHhhCCCC
Q 047840 228 DAGAWNAMISGVAM----NGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHA-----KMVRDGLNLFENMSAVYGVEP 298 (445)
Q Consensus 228 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~ 298 (445)
+..++..+...|.. .+++++|+.+|++..+.| +...+..+...|... +++++|...|++..+. .
T Consensus 254 ~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----~ 326 (490)
T 2xm6_A 254 NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----G 326 (490)
T ss_dssp CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----T
T ss_pred CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----C
Confidence 44455555555555 556666666666655443 233444444444443 5666666666665542 1
Q ss_pred ChhHHHHHHHHHHhcC---ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCCchh
Q 047840 299 QLEHYACVVDLLARAG---MVEEAEKFIEEKMGGLGGGDANVWGALLSACRI----YGKIEVGNRVWRKLAEMGITDFST 371 (445)
Q Consensus 299 ~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~ 371 (445)
+...+..+...|...| ++++|.+.|++..+.+ ++..+..+...|.. .+++++|.+.|+++.+.+ ++.+
T Consensus 327 ~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a 401 (490)
T 2xm6_A 327 DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAA 401 (490)
T ss_dssp CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHH
T ss_pred CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHH
Confidence 3344445555555444 5556666666655442 44555555555555 556666666666665543 3445
Q ss_pred HHHHHHHHHH----cCChHHHHHHHHHHHhcC
Q 047840 372 HVLSYNIYKE----AGWDMEANKVRKLISETG 399 (445)
Q Consensus 372 ~~~l~~~~~~----~g~~~~A~~~~~~m~~~~ 399 (445)
+..++.+|.. .+++++|...+++..+.+
T Consensus 402 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 402 QVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 5556666665 566666666666655544
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.6e-20 Score=167.92 Aligned_cols=263 Identities=8% Similarity=-0.055 Sum_probs=199.5
Q ss_pred ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHH
Q 047840 127 NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVD 206 (445)
Q Consensus 127 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 206 (445)
+...+..+...+.+.|++++|++.|+++.+.. +.+..++..+...+...|++++|...|+++.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 34456666777777777777777777776643 3356667777777777777777777777777664 445666777777
Q ss_pred HHHccCChHHHHHHhhcCCCCC-------------hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCHHHHHHHHH
Q 047840 207 MYSKCGHVHSALSVFEGISNKD-------------AGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQ-PTETTFVAVLT 272 (445)
Q Consensus 207 ~~~~~g~~~~a~~~~~~~~~~~-------------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~l~~ 272 (445)
+|...|++++|...|+++...+ ...+..+...+...|++++|+..++++.+.... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 7777777777777776654311 223344578889999999999999999887432 26788999999
Q ss_pred HhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChH
Q 047840 273 TCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIE 352 (445)
Q Consensus 273 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 352 (445)
.+...|++++|...++++.+. .+.+..++..+..+|...|++++|...|+++.+.. +.+..++..+..+|...|+++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence 999999999999999999875 24468889999999999999999999999998776 567899999999999999999
Q ss_pred HHHHHHHHHHHhCCC------------CchhHHHHHHHHHHcCChHHHHHHHHH
Q 047840 353 VGNRVWRKLAEMGIT------------DFSTHVLSYNIYKEAGWDMEANKVRKL 394 (445)
Q Consensus 353 ~a~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 394 (445)
+|...|+++++..|. +..++..++.++...|+.+.+..+.++
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999999997765 367889999999999999998887754
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.86 E-value=6.2e-18 Score=159.37 Aligned_cols=337 Identities=12% Similarity=0.033 Sum_probs=282.9
Q ss_pred cCCchHHHHHHHHHHhcCCCCCcccHHHHHHHhhh----cCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHh----c
Q 047840 8 ANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVI----LGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSL----V 79 (445)
Q Consensus 8 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 79 (445)
.+++++|+.+|++..+.| ++..+..+...+.. .++++ .|..+++...+.| +...+..|...|.. .
T Consensus 56 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~-~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~ 128 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYA-QAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVK 128 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH-HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred CcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHH-HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCC
Confidence 789999999999998865 56677778888877 88898 9999999998865 56777788888888 7
Q ss_pred CCHHHHHHHhccCCCC-ChhhHHHHHHHHHc----CCChHHHHHHhccCCC-CChhhHHHHHHHHHh----cCCHhHHHH
Q 047840 80 HKMGTARALFDKSPDR-DVVTWTTMVDGYGK----MGDFENARELFEKMPE-RNAVSWSAIMAAYSR----ISDFKEVLS 149 (445)
Q Consensus 80 g~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~ 149 (445)
+++++|...|++..++ ++..+..+...|.. .+++++|.+.|++..+ .+..++..+...|.. .+++++|.+
T Consensus 129 ~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 208 (490)
T 2xm6_A 129 VDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQ 208 (490)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHH
Confidence 8999999999886554 66778888888887 7899999999998765 477788888888888 899999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHc----cCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHc----cCChHHHHHHh
Q 047840 150 LFRQMQEVGMKPNESGLVSVLTACAH----LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSK----CGHVHSALSVF 221 (445)
Q Consensus 150 ~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~ 221 (445)
.|++..+.| +...+..+...+.. .+++++|..+|++..+.| +...+..+...|.. .+++++|..+|
T Consensus 209 ~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~ 282 (490)
T 2xm6_A 209 WYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWY 282 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHH
Confidence 999998865 56777788888875 789999999999998875 45566777778877 89999999999
Q ss_pred hcCCC-CChhhHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCC---cHHHHHHHHHHhHH
Q 047840 222 EGISN-KDAGAWNAMISGVAMN-----GDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAK---MVRDGLNLFENMSA 292 (445)
Q Consensus 222 ~~~~~-~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~ 292 (445)
++..+ .+..++..+...|... +++++|+..|++..+.| +...+..+...|...| +.++|..+|++..+
T Consensus 283 ~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~ 359 (490)
T 2xm6_A 283 RKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAA 359 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHH
Confidence 88765 4677888888888887 89999999999998875 4556667777776656 88999999999986
Q ss_pred hhCCCCChhHHHHHHHHHHh----cCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHh
Q 047840 293 VYGVEPQLEHYACVVDLLAR----AGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRI----YGKIEVGNRVWRKLAEM 364 (445)
Q Consensus 293 ~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~ 364 (445)
. .+...+..+...|.. .+++++|...|++..+.+ ++..+..+...|.. .++.++|...|+++.+.
T Consensus 360 ~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 432 (490)
T 2xm6_A 360 K----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTN 432 (490)
T ss_dssp T----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHH
T ss_pred C----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 4 467788888888988 899999999999998765 57788889999988 89999999999999999
Q ss_pred CCC
Q 047840 365 GIT 367 (445)
Q Consensus 365 ~~~ 367 (445)
+|+
T Consensus 433 ~~~ 435 (490)
T 2xm6_A 433 DMN 435 (490)
T ss_dssp HCC
T ss_pred CCC
Confidence 876
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-18 Score=151.58 Aligned_cols=269 Identities=12% Similarity=0.048 Sum_probs=205.4
Q ss_pred HHcCCChHHHHHHhccCCCCC----hhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHH
Q 047840 107 YGKMGDFENARELFEKMPERN----AVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQG 182 (445)
Q Consensus 107 ~~~~g~~~~A~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 182 (445)
....|+++.|+..+++....+ ......+.++|...|+++.|+..++. . -+|+..++..+...+...++.++|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHHHH
Confidence 345677777777776655432 22344566777888888887775543 1 345666777777777888888888
Q ss_pred HHHHHHHHHcCC-CCchhhhhHHHHHHHccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 047840 183 LWVHSYAKRYHL-EKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQ 261 (445)
Q Consensus 183 ~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 261 (445)
.+.++++...+. |.+...+..+...+...|++++|...+++ ..+..++..++..+.+.|++++|.+.|+++.+..
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~-- 160 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD-- 160 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--
Confidence 888888777653 34556677777888999999999999988 5677889999999999999999999999998874
Q ss_pred CCHHHH---HHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHH
Q 047840 262 PTETTF---VAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVW 338 (445)
Q Consensus 262 p~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 338 (445)
|+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|...|+++++.. +.++.++
T Consensus 161 p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l 237 (291)
T 3mkr_A 161 EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETL 237 (291)
T ss_dssp TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 443211 22334445669999999999999975 45678889999999999999999999999998877 6788999
Q ss_pred HHHHHHHHHcCChHH-HHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHH
Q 047840 339 GALLSACRIYGKIEV-GNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANK 390 (445)
Q Consensus 339 ~~l~~~~~~~g~~~~-a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 390 (445)
..++..+...|+.++ +.++++++++..|+++.+. +...+.+.++++..
T Consensus 238 ~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 238 INLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVL 286 (291)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHH
Confidence 999999999999976 6799999999999987544 34455555555544
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.84 E-value=4.1e-19 Score=158.21 Aligned_cols=259 Identities=8% Similarity=-0.038 Sum_probs=183.6
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHc
Q 047840 131 WSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSK 210 (445)
Q Consensus 131 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 210 (445)
+..+...+...|++++|..+|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+..++..
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 101 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHH
Confidence 4444445555555555555555554432 2244444455555555555555555555555443 3344445555555555
Q ss_pred cCChHHHHHHhhcCCCC---ChhhHHHH--------------HH-HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047840 211 CGHVHSALSVFEGISNK---DAGAWNAM--------------IS-GVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLT 272 (445)
Q Consensus 211 ~g~~~~a~~~~~~~~~~---~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 272 (445)
.|++++|...++++... +...+..+ .. .+...|++++|...++++.+.. +.+...+..+..
T Consensus 102 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 180 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGV 180 (327)
T ss_dssp TTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 55555555555443321 11222222 22 3677889999999999998874 337788889999
Q ss_pred HhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChH
Q 047840 273 TCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIE 352 (445)
Q Consensus 273 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 352 (445)
.+...|++++|...++++... .+.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|+++
T Consensus 181 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~ 257 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYD 257 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHH
Confidence 999999999999999999864 24457888999999999999999999999988766 567889999999999999999
Q ss_pred HHHHHHHHHHHhCCC------------CchhHHHHHHHHHHcCChHHHHHHHHHH
Q 047840 353 VGNRVWRKLAEMGIT------------DFSTHVLSYNIYKEAGWDMEANKVRKLI 395 (445)
Q Consensus 353 ~a~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m 395 (445)
+|.+.++++.+..|. ++.++..++.++.+.|++++|..++++.
T Consensus 258 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 258 LAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 999999999999988 6788999999999999999999988644
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.84 E-value=3.8e-19 Score=158.45 Aligned_cols=285 Identities=11% Similarity=0.017 Sum_probs=138.0
Q ss_pred hcCCchHHHHHHHHHHhcCCCCCcccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHH
Q 047840 7 QANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTAR 86 (445)
Q Consensus 7 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 86 (445)
+.|+.++|.++++++. ++.+|..+..++.+.|+++ .|...|.. .+|..+|..++..+...|++++|.
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~-eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVK-EAIDSYIK------ADDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHH-HHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHH
Confidence 4678999999999882 3358999999999999999 88888854 357778999999999999999999
Q ss_pred HHhccCCC--CChhhHHHHHHHHHcCCChHHHHHHhccCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHH
Q 047840 87 ALFDKSPD--RDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNES 164 (445)
Q Consensus 87 ~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 164 (445)
..++...+ +++.+.+.++.+|.+.|+++++.++++. |+..+|+.+...|...|++++|...|..+ .
T Consensus 82 ~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~ 149 (449)
T 1b89_A 82 KYLQMARKKARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------S 149 (449)
T ss_dssp ---------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------T
T ss_pred HHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------h
Confidence 98877665 4567889999999999999999888864 77789999999999999999999999976 3
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCC
Q 047840 165 GLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGD 244 (445)
Q Consensus 165 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~ 244 (445)
.|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+. .++.-...++..|.+.|+
T Consensus 150 n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~ 222 (449)
T 1b89_A 150 NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGY 222 (449)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCC
Confidence 6899999999999999999999988 278899999999999999999988877755 455555578899999999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCC------ChhHHHHHHHHHHhcCChHH
Q 047840 245 AKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP------QLEHYACVVDLLARAGMVEE 318 (445)
Q Consensus 245 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~ 318 (445)
+++|+.+++...... +-....|+.+..+|++- ++++..+.++....+-+++| +...|..+.-.|...++++.
T Consensus 223 ~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~ 300 (449)
T 1b89_A 223 FEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDN 300 (449)
T ss_dssp HHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHH
Confidence 999999999887653 44566677776666653 23444443333333224444 56788999999999999999
Q ss_pred HHHHHHH
Q 047840 319 AEKFIEE 325 (445)
Q Consensus 319 A~~~~~~ 325 (445)
|...+-+
T Consensus 301 A~~tm~~ 307 (449)
T 1b89_A 301 AIITMMN 307 (449)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8886544
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.3e-17 Score=158.88 Aligned_cols=383 Identities=9% Similarity=0.024 Sum_probs=277.2
Q ss_pred hhhcCCchHHHHHHHHHHhcCCCCCcccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHH-HhcCCHH
Q 047840 5 YMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFY-SLVHKMG 83 (445)
Q Consensus 5 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~ 83 (445)
+.+.|++++|..+|+++.+.. +-+...|...+..+.+.|+++ .|..+|+.++... |+...|...+... ...|+++
T Consensus 22 ~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~-~a~~~~~ral~~~--p~~~lw~~~~~~~~~~~~~~~ 97 (530)
T 2ooe_A 22 EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYD-KVEKLFQRCLMKV--LHIDLWKCYLSYVRETKGKLP 97 (530)
T ss_dssp HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHH-HHHHHHHHHTTTC--CCHHHHHHHHHHHHHHTTTST
T ss_pred HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHhcC--CChHHHHHHHHHHHHHccchh
Confidence 356799999999999998743 335567888889899999999 9999999988853 6777777776533 3457776
Q ss_pred HHHH----HhccCC-----C-CChhhHHHHHHHHHc---------CCChHHHHHHhccCCC-CCh---hhHHHHHHHH--
Q 047840 84 TARA----LFDKSP-----D-RDVVTWTTMVDGYGK---------MGDFENARELFEKMPE-RNA---VSWSAIMAAY-- 138 (445)
Q Consensus 84 ~a~~----~~~~~~-----~-~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~-~~~---~~~~~l~~~~-- 138 (445)
.|.+ +|+... . ++...|...+....+ .|+++.|..+|++... |.. ..|.......
T Consensus 98 ~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~ 177 (530)
T 2ooe_A 98 SYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEG 177 (530)
T ss_dssp THHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHh
Confidence 6654 665432 1 355677777776554 6889999999998775 321 2333222211
Q ss_pred -----------HhcCCHhHHHHHHHHHH------HcC---CCCCH--------HHHHHHHHHHHcc----CCh----hHH
Q 047840 139 -----------SRISDFKEVLSLFRQMQ------EVG---MKPNE--------SGLVSVLTACAHL----GAI----TQG 182 (445)
Q Consensus 139 -----------~~~~~~~~a~~~~~~~~------~~~---~~p~~--------~~~~~l~~~~~~~----~~~----~~a 182 (445)
...++++.|..++.... +.. ++|+. ..|...+...... ++. +.+
T Consensus 178 ~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a 257 (530)
T 2ooe_A 178 INIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRV 257 (530)
T ss_dssp HCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHH
T ss_pred hchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHH
Confidence 13456777877776532 111 34431 3444444333221 232 367
Q ss_pred HHHHHHHHHcCCCCchhhhhHHHHHHHc-------cCChH-------HHHHHhhcCCC---C-ChhhHHHHHHHHHhcCC
Q 047840 183 LWVHSYAKRYHLEKNVILATAVVDMYSK-------CGHVH-------SALSVFEGISN---K-DAGAWNAMISGVAMNGD 244 (445)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~a~~~~~~~~~---~-~~~~~~~l~~~~~~~~~ 244 (445)
..+|+++.... +.+..+|..++..+.+ .|+++ +|..+|++... | +...|..++..+.+.|+
T Consensus 258 ~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~ 336 (530)
T 2ooe_A 258 MFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMK 336 (530)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCC
Confidence 78898888864 5577888888888775 78887 89999987653 3 56789999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCC--HHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHH-HHhcCChHHHH
Q 047840 245 AKKSLELFDRMVKSGTQPT--ETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ-LEHYACVVDL-LARAGMVEEAE 320 (445)
Q Consensus 245 ~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~-~~~~g~~~~A~ 320 (445)
+++|..+|+++.+. .|+ ...|...+..+.+.|++++|..+|++..+. .|+ ...|...+.. +...|+.++|.
T Consensus 337 ~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~---~~~~~~~~~~~a~~~~~~~~~~~~A~ 411 (530)
T 2ooe_A 337 YEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTAALMEYYCSKDKSVAF 411 (530)
T ss_dssp HHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---TTCCTHHHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---cCCchHHHHHHHHHHHHHcCChhHHH
Confidence 99999999999885 444 247888888888899999999999999853 333 3333322222 33689999999
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCch----hHHHHHHHHHHcCChHHHHHHHHHHH
Q 047840 321 KFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFS----THVLSYNIYKEAGWDMEANKVRKLIS 396 (445)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~m~ 396 (445)
.+|+..++.. +.++..|..++..+.+.|+.++|..+|++++...|.++. .|...+......|+.+.+..+.+++.
T Consensus 412 ~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~ 490 (530)
T 2ooe_A 412 KIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 490 (530)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999988765 567899999999999999999999999999998765544 77777888888999999999998887
Q ss_pred hc
Q 047840 397 ET 398 (445)
Q Consensus 397 ~~ 398 (445)
+.
T Consensus 491 ~~ 492 (530)
T 2ooe_A 491 TA 492 (530)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.83 E-value=3.2e-20 Score=165.31 Aligned_cols=284 Identities=11% Similarity=0.106 Sum_probs=132.4
Q ss_pred hcCCHHHHHHHhccCCCCChhhHHHHHHHHHcCCChHHHHHHhccCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 047840 78 LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEV 157 (445)
Q Consensus 78 ~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 157 (445)
+.|++++|.+.++++..| .+|..|+.++.+.|++++|++.|.+. +|..+|..++..+...|++++|+..++..++.
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~ 90 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKK 90 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 567888899988888554 48889999999999999999988664 56668888888888899999999977666553
Q ss_pred CCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCCCChhhHHHHHH
Q 047840 158 GMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMIS 237 (445)
Q Consensus 158 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~ 237 (445)
.+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..|...|++++|..+|..+ ..|..++.
T Consensus 91 --~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~ 156 (449)
T 1b89_A 91 --ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLAS 156 (449)
T ss_dssp --------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----TCHHHHHH
T ss_pred --CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHH
Confidence 4557778888899999999988887774 366778889999999999999999999877 47889999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChH
Q 047840 238 GVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVE 317 (445)
Q Consensus 238 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 317 (445)
++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+ ..++.....++..|.+.|+++
T Consensus 157 ~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L------~~~ad~l~~lv~~Yek~G~~e 224 (449)
T 1b89_A 157 TLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI------VVHADELEELINYYQDRGYFE 224 (449)
T ss_dssp HHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT------TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH------HhCHhhHHHHHHHHHHCCCHH
Confidence 999999999999999887 27888999999999999999996554432 223344556888899999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHc--CChHHHHHHHHHHHHhCC-----CCchhHHHHHHHHHHcCChHHHHH
Q 047840 318 EAEKFIEEKMGGLGGGDANVWGALLSACRIY--GKIEVGNRVWRKLAEMGI-----TDFSTHVLSYNIYKEAGWDMEANK 390 (445)
Q Consensus 318 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~ 390 (445)
+|..+++..+... +.....|.-+..+|++- ++..+.++.|..-+...| .++..|..+.-.|...++++.|..
T Consensus 225 Eai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 225 ELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 303 (449)
T ss_dssp HHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 9999999887665 55667777777777654 345555555554444444 566778888889999999998876
Q ss_pred HH
Q 047840 391 VR 392 (445)
Q Consensus 391 ~~ 392 (445)
.+
T Consensus 304 tm 305 (449)
T 1b89_A 304 TM 305 (449)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.83 E-value=5.4e-19 Score=160.31 Aligned_cols=258 Identities=10% Similarity=0.020 Sum_probs=206.9
Q ss_pred HHhcCCHhHHHH-HHHHHHHcC---CCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCC
Q 047840 138 YSRISDFKEVLS-LFRQMQEVG---MKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGH 213 (445)
Q Consensus 138 ~~~~~~~~~a~~-~~~~~~~~~---~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 213 (445)
+...|++++|++ .|++..... ...+...+..+...+...|++++|...++++.+.. +.+..++..+..++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 445688999988 887665421 11134567889999999999999999999999875 5678889999999999999
Q ss_pred hHHHHHHhhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH---------------HHHHhh
Q 047840 214 VHSALSVFEGISN---KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVA---------------VLTTCT 275 (445)
Q Consensus 214 ~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~---------------l~~~~~ 275 (445)
+++|...|+++.. .+..++..+...+...|++++|+..++++...... +...+.. .+..+.
T Consensus 114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 9999999987653 46788999999999999999999999999886432 2222211 233334
Q ss_pred cCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHH
Q 047840 276 HAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGN 355 (445)
Q Consensus 276 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 355 (445)
..|++++|...++++.....-.++..++..+...|...|++++|...++++.+.. +.+..++..++..+...|++++|.
T Consensus 193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHH
Confidence 8899999999999999762222257888999999999999999999999998766 667899999999999999999999
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 356 RVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
..++++++..|.++.++..++.+|.+.|++++|...++++.+.
T Consensus 272 ~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 272 AAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999998764
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.3e-18 Score=150.11 Aligned_cols=248 Identities=8% Similarity=0.017 Sum_probs=206.9
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccC
Q 047840 135 MAAYSRISDFKEVLSLFRQMQEVGMKPNE--SGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCG 212 (445)
Q Consensus 135 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 212 (445)
++-....|++..|+..++..... .|+. .....+.++|...|+++.|...++. ..+|+..++..+...+...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 45567789999999998876543 3443 4556778999999999999986654 24677888899999999999
Q ss_pred ChHHHHHHhhcCC----CC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHH
Q 047840 213 HVHSALSVFEGIS----NK-DAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLF 287 (445)
Q Consensus 213 ~~~~a~~~~~~~~----~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 287 (445)
+.++|.+.++++. .| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|...+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999863 23 566777888999999999999999987 457788889999999999999999999
Q ss_pred HHhHHhhCCCCChhHH---HHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 047840 288 ENMSAVYGVEPQLEHY---ACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEM 364 (445)
Q Consensus 288 ~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 364 (445)
+.+.+. .|+.... ..++..+...|++++|..+|+++.+.. +.++..++.+..++...|++++|...|+++++.
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999975 4553221 223344455699999999999999875 788999999999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHHcCChHH-HHHHHHHHHhc
Q 047840 365 GITDFSTHVLSYNIYKEAGWDME-ANKVRKLISET 398 (445)
Q Consensus 365 ~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~ 398 (445)
.|.++.++..++.++...|+.++ +.++++++.+.
T Consensus 230 ~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 230 DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999987 56888888764
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.6e-18 Score=155.64 Aligned_cols=233 Identities=9% Similarity=-0.024 Sum_probs=199.1
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCC---CChhhHHHHHHH
Q 047840 162 NESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN---KDAGAWNAMISG 238 (445)
Q Consensus 162 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~ 238 (445)
+...+..+...+.+.|++++|...|+++.+.. +.+..++..+..+|...|++++|...|+++.. .+..++..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 45568889999999999999999999999886 56788999999999999999999999997754 467799999999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCH-----------HHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHH
Q 047840 239 VAMNGDAKKSLELFDRMVKSGTQPTE-----------TTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVV 307 (445)
Q Consensus 239 ~~~~~~~~~a~~~~~~m~~~~~~p~~-----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 307 (445)
|...|++++|+..|+++.+.. |+. ..+..+...+...|++++|..+++++.....-.++..++..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 999999999999999998753 322 2233457788999999999999999997622222688899999
Q ss_pred HHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHH
Q 047840 308 DLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDME 387 (445)
Q Consensus 308 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 387 (445)
..|...|++++|...++++.+.. +.+..+|..+..+|...|++++|+..|+++++..|.++.++..++.+|.+.|++++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 99999999999999999998776 67889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc
Q 047840 388 ANKVRKLISET 398 (445)
Q Consensus 388 A~~~~~~m~~~ 398 (445)
|...++++.+.
T Consensus 300 A~~~~~~al~~ 310 (365)
T 4eqf_A 300 AVSNFLTALSL 310 (365)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998764
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.81 E-value=8.3e-17 Score=153.23 Aligned_cols=374 Identities=9% Similarity=0.032 Sum_probs=269.0
Q ss_pred HHHHHhcCCCCCcccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHhccCCC--C
Q 047840 18 YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPD--R 95 (445)
Q Consensus 18 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~ 95 (445)
|++.++.. +-+...|..++. +.+.|+++ .+..+++.+.+. .+.+...|..++..+.+.|++++|..+|++... |
T Consensus 2 le~al~~~-P~~~~~w~~l~~-~~~~~~~~-~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p 77 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIR-EAQNQPID-KARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL 77 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHH-HHHSSCHH-HHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC
T ss_pred hhhHhhhC-CCCHHHHHHHHH-HHHhCCHH-HHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Confidence 44444433 235668888887 47789999 999999999885 355677899999999999999999999998765 6
Q ss_pred ChhhHHHHHHHH-HcCCChHHHHH----HhccCC-----C-CChhhHHHHHHHHHh---------cCCHhHHHHHHHHHH
Q 047840 96 DVVTWTTMVDGY-GKMGDFENARE----LFEKMP-----E-RNAVSWSAIMAAYSR---------ISDFKEVLSLFRQMQ 155 (445)
Q Consensus 96 ~~~~~~~l~~~~-~~~g~~~~A~~----~~~~~~-----~-~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~ 155 (445)
+...|...+... ...|+.++|.+ +|++.. . ++...|...+..... .|+++.|..+|++.+
T Consensus 78 ~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al 157 (530)
T 2ooe_A 78 HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGC 157 (530)
T ss_dssp CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHH
Confidence 666777776533 35677777665 665542 1 356677777776654 789999999999998
Q ss_pred HcCCCCCHHHHHHHHHHH-------------HccCChhHHHHHHHHHH------HcC---CCCc--------hhhhhHHH
Q 047840 156 EVGMKPNESGLVSVLTAC-------------AHLGAITQGLWVHSYAK------RYH---LEKN--------VILATAVV 205 (445)
Q Consensus 156 ~~~~~p~~~~~~~l~~~~-------------~~~~~~~~a~~~~~~~~------~~~---~~~~--------~~~~~~l~ 205 (445)
+....+....|....... ...+++..|..+++... +.. ++|+ ...|...+
T Consensus 158 ~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~ 237 (530)
T 2ooe_A 158 VNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYI 237 (530)
T ss_dssp TSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHH
T ss_pred hchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHH
Confidence 731111123333322211 13456677777776632 111 2333 23444444
Q ss_pred HHHHcc----CCh----HHHHHHhhcCCC---CChhhHHHHHHHHHh-------cCChH-------HHHHHHHHHHHcCC
Q 047840 206 DMYSKC----GHV----HSALSVFEGISN---KDAGAWNAMISGVAM-------NGDAK-------KSLELFDRMVKSGT 260 (445)
Q Consensus 206 ~~~~~~----g~~----~~a~~~~~~~~~---~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~m~~~~~ 260 (445)
...... ++. ..+..+|++... .++..|..++..+.+ .|+++ +|..+|++..+.-.
T Consensus 238 ~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~ 317 (530)
T 2ooe_A 238 QWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL 317 (530)
T ss_dssp HHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhC
Confidence 332221 232 366677776654 467788888888775 78887 89999999876312
Q ss_pred CCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCC-h-hHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHH
Q 047840 261 QPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ-L-EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVW 338 (445)
Q Consensus 261 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 338 (445)
+.+...+..++..+.+.|++++|..+|+++.+. .|+ . ..|..++..+.+.|++++|.++|++..+.. +.+...|
T Consensus 318 p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~ 393 (530)
T 2ooe_A 318 KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI---EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVY 393 (530)
T ss_dssp SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS---SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHH
T ss_pred cccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc---cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHH
Confidence 335778888888899999999999999999963 554 2 478888888899999999999999998764 3344444
Q ss_pred HHHHHH-HHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 047840 339 GALLSA-CRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETG 399 (445)
Q Consensus 339 ~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 399 (445)
...+.. +...|+.++|..+|+++++..|+++..+..++..+.+.|+.++|..+|++....+
T Consensus 394 ~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 394 VTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 333322 3468999999999999999999999999999999999999999999999998763
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=4.5e-17 Score=152.90 Aligned_cols=355 Identities=10% Similarity=-0.061 Sum_probs=227.4
Q ss_pred CcccHHHHHHHhhhcCCchhHHHHHHHHHHHh-----c--CCC-ChhhHHHHHHHHHhcCCHHHHHHHhccCCC------
Q 047840 29 NNYTFPPLIKACVILGPLENFGMFVHAHVVKF-----G--FGE-DPFVVSSLLEFYSLVHKMGTARALFDKSPD------ 94 (445)
Q Consensus 29 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------ 94 (445)
....|+.+...+...|+++ .|...++...+. + ..| ...+|+.+..+|...|++++|...+++..+
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~-eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNE-AALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 3456888888888899999 888888877553 1 122 345788888899999999999888775421
Q ss_pred -----CChhhHHHHHHHHHc--CCChHHHHHHhccCCC--C-ChhhHHHHHHH---HHhcCCHhHHHHHHHHHHHcCCCC
Q 047840 95 -----RDVVTWTTMVDGYGK--MGDFENARELFEKMPE--R-NAVSWSAIMAA---YSRISDFKEVLSLFRQMQEVGMKP 161 (445)
Q Consensus 95 -----~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~p 161 (445)
....++..+..++.. .+++++|+..|++..+ | ++..+..+..+ +...++.++|++.+++..+.+ +.
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~ 207 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PD 207 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SS
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Cc
Confidence 133456655555544 4568889998888763 4 44455544444 345677788888888887753 22
Q ss_pred CHHHHHHHHHHHHc----cCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCC---CChhhHHH
Q 047840 162 NESGLVSVLTACAH----LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN---KDAGAWNA 234 (445)
Q Consensus 162 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ 234 (445)
+...+..+...+.. .+++++|.+.+++..... +.+..++..+...|...|++++|...|++..+ .+..++..
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 286 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQ 286 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHH
Confidence 45555555544443 457788888888888775 55677788888889999999999988887653 34556666
Q ss_pred HHHHHHhc-------------------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhC
Q 047840 235 MISGVAMN-------------------GDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG 295 (445)
Q Consensus 235 l~~~~~~~-------------------~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 295 (445)
+...|... +..+.|...+++..... +.+..++..+...+...|++++|...|++....
T Consensus 287 lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~-- 363 (472)
T 4g1t_A 287 IGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK-- 363 (472)
T ss_dssp HHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc--
Confidence 55554321 23566777777776653 234556777778888888888888888888754
Q ss_pred CCCChhH----HHHHHH-HHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCch
Q 047840 296 VEPQLEH----YACVVD-LLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFS 370 (445)
Q Consensus 296 ~~~~~~~----~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 370 (445)
.|+... +..+.. .....|++++|+..|.+.++.. |+...... ....+.+++++.++..|.++.
T Consensus 364 -~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~--~~~~~~~~---------~~~~l~~~~~~~l~~~p~~~~ 431 (472)
T 4g1t_A 364 -ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN--QKSREKEK---------MKDKLQKIAKMRLSKNGADSE 431 (472)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC--CCCHHHHH---------HHHHHHHHHHHHHHHCC-CTT
T ss_pred -CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHH---------HHHHHHHHHHHHHHhCCCCHH
Confidence 333221 222222 2346788888888888877544 44322221 223455677778888999999
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHhcCCc
Q 047840 371 THVLSYNIYKEAGWDMEANKVRKLISETGMK 401 (445)
Q Consensus 371 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 401 (445)
++..++.+|...|++++|.+.+++..+.+-.
T Consensus 432 ~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~ 462 (472)
T 4g1t_A 432 ALHVLAFLQELNEKMQQADEDSERGLESGSL 462 (472)
T ss_dssp HHHHHHHHHHHHHHCC---------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999998876543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.80 E-value=4.4e-16 Score=154.64 Aligned_cols=345 Identities=11% Similarity=0.068 Sum_probs=269.2
Q ss_pred hhchhhcCCchHHHHHHHHHHhcC--CCCCcccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhc
Q 047840 2 IRGYMQANFPKLSVFCYLDMLDMG--FEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLV 79 (445)
Q Consensus 2 i~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 79 (445)
+++|...|.+.+|++++++..-.+ +.-+...-+.++.+..+. +.. ....+.+... ......+...+...
T Consensus 992 vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~-Rv~eyI~kLd-------~~d~~eIA~Iai~l 1062 (1630)
T 1xi4_A 992 VKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRT-RVMEYINRLD-------NYDAPDIANIAISN 1062 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-Chh-hHHHHHHHhh-------hccHHHHHHHHHhC
Confidence 567889999999999999998432 112234455566666555 334 4444443332 12244578888899
Q ss_pred CCHHHHHHHhccCCCCChhhHHHHHHHHHcCCChHHHHHHhccCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCC
Q 047840 80 HKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGM 159 (445)
Q Consensus 80 g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 159 (445)
|.+++|..+|++... .....+.++. ..|++++|.++.++.. +..+|..+..++...|++++|++.|.+.
T Consensus 1063 glyEEAf~IYkKa~~-~~~A~~VLie---~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA----- 1131 (1630)
T 1xi4_A 1063 ELFEEAFAIFRKFDV-NTSAVQVLIE---HIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA----- 1131 (1630)
T ss_pred CCHHHHHHHHHHcCC-HHHHHHHHHH---HHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc-----
Confidence 999999999999752 2222233322 7789999999999774 4678889999999999999999999663
Q ss_pred CCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCCCChhhHHHHHHHH
Q 047840 160 KPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239 (445)
Q Consensus 160 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~ 239 (445)
-|...|..++.+|.+.|++++|.+++...++.. +++...+.++.+|++.+++++...+. ..++...|..+...|
T Consensus 1132 -dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~l 1205 (1630)
T 1xi4_A 1132 -DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRC 1205 (1630)
T ss_pred -CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHH
Confidence 377888999999999999999999999988765 44444556999999999999655553 455667777899999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHH
Q 047840 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEA 319 (445)
Q Consensus 240 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 319 (445)
...|++++|..+|... ..|..+...+.+.|+++.|.+.+++.. +..+|..+..+|...|++..|
T Consensus 1206 e~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~-------n~~aWkev~~acve~~Ef~LA 1269 (1630)
T 1xi4_A 1206 YDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVCFACVDGKEFRLA 1269 (1630)
T ss_pred HhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC-------CHHHHHHHHHHHhhhhHHHHH
Confidence 9999999999999985 478899999999999999999998774 468899999999999999999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHc--CChHHHHHHHH
Q 047840 320 EKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEA--GWDMEANKVRK 393 (445)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~ 393 (445)
......+ ..++..+..++..|.+.|.+++|+.+++..+.+++.+...|..++.+|.+- ++..++.++|.
T Consensus 1270 ~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1270 QMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred HHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 8877654 456677889999999999999999999999999988888888888877774 45555555554
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.79 E-value=6.1e-18 Score=150.56 Aligned_cols=262 Identities=7% Similarity=0.019 Sum_probs=198.8
Q ss_pred hhHHHHHHHHHcCCChHHHHHHhccCCC---CChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 047840 98 VTWTTMVDGYGKMGDFENARELFEKMPE---RNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACA 174 (445)
Q Consensus 98 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 174 (445)
..+..+...+...|++++|..+|+++.+ .+..++..+...+...|++++|.+.++++.+.. +.+..++..+...+.
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 4455666666677777777777766643 255667777778888888888888888877653 336677777788888
Q ss_pred ccCChhHHHHHHHHHHHcCCCCchhhhhHH--------------HH-HHHccCChHHHHHHhhcCCC---CChhhHHHHH
Q 047840 175 HLGAITQGLWVHSYAKRYHLEKNVILATAV--------------VD-MYSKCGHVHSALSVFEGISN---KDAGAWNAMI 236 (445)
Q Consensus 175 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~ 236 (445)
..|++++|...++++.+.. +.+...+..+ .. .+...|++++|...++++.+ .+...+..+.
T Consensus 101 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 179 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLG 179 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 8888888888888877664 2233333332 23 47778888999988887643 3667888889
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCCh
Q 047840 237 SGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMV 316 (445)
Q Consensus 237 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 316 (445)
..+...|++++|+..++++.+.. +.+..++..+...+...|++++|...++++.+. .+.+...+..+..+|...|++
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~g~~ 256 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDI--NPGYVRVMYNMAVSYSNMSQY 256 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhccH
Confidence 99999999999999999988763 346778888999999999999999999998864 234577888999999999999
Q ss_pred HHHHHHHHHHhcCCCCC------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 047840 317 EEAEKFIEEKMGGLGGG------------DANVWGALLSACRIYGKIEVGNRVWRKLAEMG 365 (445)
Q Consensus 317 ~~A~~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 365 (445)
++|...++++.+.. +. +..+|..+..++...|+.++|..++++.++..
T Consensus 257 ~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 316 (327)
T 3cv0_A 257 DLAAKQLVRAIYMQ-VGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPF 316 (327)
T ss_dssp HHHHHHHHHHHHHH-TTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHH
T ss_pred HHHHHHHHHHHHhC-CccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Confidence 99999999887654 22 57889999999999999999999988766543
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.76 E-value=5.3e-17 Score=139.21 Aligned_cols=228 Identities=13% Similarity=-0.011 Sum_probs=135.4
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCC--CchhhhhHHHH
Q 047840 129 VSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLE--KNVILATAVVD 206 (445)
Q Consensus 129 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~ 206 (445)
..|..+...+...|++++|+..|++..+.. .+...+..+..++...|++++|...++++.+.... ++..
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~------- 76 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYK------- 76 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH-------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchH-------
Confidence 456667777777777777777777777665 56677777777777777777777777776654210 0100
Q ss_pred HHHccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHH
Q 047840 207 MYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNL 286 (445)
Q Consensus 207 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 286 (445)
....++..+...+...|++++|+..|++.... .|+. ..+...|++++|...
T Consensus 77 --------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~ 127 (258)
T 3uq3_A 77 --------------------VISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKK 127 (258)
T ss_dssp --------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHH
T ss_pred --------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHH
Confidence 00233444455555555555555555555553 2232 123344556666666
Q ss_pred HHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 047840 287 FENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366 (445)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 366 (445)
++.+... .+.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++++..|
T Consensus 128 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~ 204 (258)
T 3uq3_A 128 AEAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP 204 (258)
T ss_dssp HHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH
Confidence 6665542 12234455556666666666666666666665544 44556666666666666666666666666666666
Q ss_pred CCchhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 047840 367 TDFSTHVLSYNIYKEAGWDMEANKVRKLISE 397 (445)
Q Consensus 367 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 397 (445)
.++.++..++.++...|++++|.+.+++..+
T Consensus 205 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 205 NFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 6666666666666666666666666665543
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.6e-16 Score=136.11 Aligned_cols=186 Identities=11% Similarity=0.025 Sum_probs=141.2
Q ss_pred HHHHHHHccCChHHHHHHhhcCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CCC----HHHHHHHHHHh
Q 047840 203 AVVDMYSKCGHVHSALSVFEGISN--KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGT--QPT----ETTFVAVLTTC 274 (445)
Q Consensus 203 ~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~p~----~~~~~~l~~~~ 274 (445)
.+...+...|++++|...|++..+ .+..++..+...+...|++++|+..+++..+... .|+ ..++..+...+
T Consensus 10 ~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 89 (258)
T 3uq3_A 10 AEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAY 89 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHH
Confidence 333344444444444444432211 3344555566666666777777777776655321 122 57788889999
Q ss_pred hcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHH
Q 047840 275 THAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVG 354 (445)
Q Consensus 275 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 354 (445)
...|++++|...++++... .|+. ..+...|++++|...++++.... +.+...+..+...+...|++++|
T Consensus 90 ~~~~~~~~A~~~~~~a~~~---~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A 158 (258)
T 3uq3_A 90 HKLGDLKKTIEYYQKSLTE---HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNA 158 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHH---CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHcccHHHHHHHHHHHHhc---Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHH
Confidence 9999999999999999965 4553 45667788999999999998765 55678899999999999999999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 047840 355 NRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETG 399 (445)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 399 (445)
...++++++..|.++.++..++.++...|++++|...+++..+..
T Consensus 159 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 203 (258)
T 3uq3_A 159 VKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD 203 (258)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999998754
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.9e-16 Score=148.68 Aligned_cols=357 Identities=11% Similarity=0.008 Sum_probs=234.0
Q ss_pred chhhcCCchHHHHHHHHHHhc-----C--CCC-CcccHHHHHHHhhhcCCchhHHHHHHHHHHHhc------CCC-Chhh
Q 047840 4 GYMQANFPKLSVFCYLDMLDM-----G--FEP-NNYTFPPLIKACVILGPLENFGMFVHAHVVKFG------FGE-DPFV 68 (445)
Q Consensus 4 ~~~~~g~~~~A~~~~~~m~~~-----~--~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~------~~~-~~~~ 68 (445)
.+...|++++|++.|++..+. + ..| ...+|+.+..++...|+++ .|...++.+.+.. ..+ ...+
T Consensus 60 ~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~-~A~~~~~ka~~i~~~~~~~~~~~~~~~ 138 (472)
T 4g1t_A 60 LKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLS-DVQIYVDKVKHVCEKFSSPYRIESPEL 138 (472)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHHSCCSSCCCCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChH-HHHHHHHHHHHHhHhcccccchhhHHH
Confidence 456789999999999987542 1 123 3457888999999999999 9999988876632 111 2345
Q ss_pred HHHHHHHHHhc--CCHHHHHHHhccCCC--C-ChhhHHHHHHH---HHcCCChHHHHHHhccCCC--C-ChhhHHHHHHH
Q 047840 69 VSSLLEFYSLV--HKMGTARALFDKSPD--R-DVVTWTTMVDG---YGKMGDFENARELFEKMPE--R-NAVSWSAIMAA 137 (445)
Q Consensus 69 ~~~l~~~~~~~--g~~~~a~~~~~~~~~--~-~~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~ 137 (445)
+.....++... +++++|+..|++..+ | ++..+..+..+ +...++.++|++.+++..+ | +..++..+...
T Consensus 139 ~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~ 218 (472)
T 4g1t_A 139 DCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALK 218 (472)
T ss_dssp HHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHH
Confidence 55555555544 579999999998654 3 45555555554 3456778888888877653 3 55566666555
Q ss_pred HHh----cCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHcc--
Q 047840 138 YSR----ISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKC-- 211 (445)
Q Consensus 138 ~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 211 (445)
+.. .|++++|.+.+++..... +.+...+..+...+...|++++|...++++.+.. |.+..++..+..+|...
T Consensus 219 ~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~ 296 (472)
T 4g1t_A 219 LHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVF 296 (472)
T ss_dssp HHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHH
Confidence 444 467899999999988764 4467888999999999999999999999999875 44566777776665432
Q ss_pred -----------------CChHHHHHHhhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH--HHHH
Q 047840 212 -----------------GHVHSALSVFEGIS---NKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTET--TFVA 269 (445)
Q Consensus 212 -----------------g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~ 269 (445)
+.++.|...|++.. ..+..++..+...+...|++++|+..|++.......|... .+..
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~ 376 (472)
T 4g1t_A 297 QVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLR 376 (472)
T ss_dssp HHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 23566777776543 3466789999999999999999999999998865443322 2222
Q ss_pred HHH-HhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHc
Q 047840 270 VLT-TCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIY 348 (445)
Q Consensus 270 l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 348 (445)
+.. .....|+.++|+..|++..+. .|+...... ....+.++++..+..+ +.++.+|..+..+|...
T Consensus 377 ~~~~~~~~~~~~~~Ai~~y~kal~i---~~~~~~~~~---------~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~ 443 (472)
T 4g1t_A 377 YGNFQLYQMKCEDKAIHHFIEGVKI---NQKSREKEK---------MKDKLQKIAKMRLSKN-GADSEALHVLAFLQELN 443 (472)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHS---CCCCHHHHH---------HHHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhc---CcccHHHHH---------HHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 222 245789999999999998853 565433222 2234455666665555 67788999999999999
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHH
Q 047840 349 GKIEVGNRVWRKLAEMGITDFSTHVLSY 376 (445)
Q Consensus 349 g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 376 (445)
|++++|++.|+++++.+|.+|.+...++
T Consensus 444 g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 444 EKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHCC------------------------
T ss_pred CCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 9999999999999999998776665544
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.4e-16 Score=132.62 Aligned_cols=196 Identities=15% Similarity=0.087 Sum_probs=149.8
Q ss_pred CCchhhhhHHHHHHHccCChHHHHHHhhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 047840 195 EKNVILATAVVDMYSKCGHVHSALSVFEGISN---KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVL 271 (445)
Q Consensus 195 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 271 (445)
|++...+..+...+.+.|++++|...|++... .+...+..+...+.+.|++++|+..+++..+... .+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHH
Confidence 45566666777777777777777777776543 3556777777888888888888888888877632 3566777777
Q ss_pred HHhhcC-----------CcHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHH
Q 047840 272 TTCTHA-----------KMVRDGLNLFENMSAVYGVEP-QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWG 339 (445)
Q Consensus 272 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 339 (445)
..+... |++++|...+++..+. .| +...+..+..++...|++++|+..|++.++.. .++..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~ 155 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRS 155 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHH
Confidence 778888 9999999999999865 44 47788889999999999999999999998877 7889999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHH
Q 047840 340 ALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLIS 396 (445)
Q Consensus 340 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 396 (445)
.+..++...|++++|+..|+++++..|+++.++..++.++.+.|++++|.+.+++..
T Consensus 156 ~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 156 ALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999988654
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-14 Score=144.74 Aligned_cols=334 Identities=11% Similarity=0.119 Sum_probs=186.8
Q ss_pred hhhcCCchHHHHHHHHHHhcCCCCCcccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHH
Q 047840 5 YMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGT 84 (445)
Q Consensus 5 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 84 (445)
+...|.+++|..+|++... .....+.++. ..++++ .|.++.++. -+..+|..+..++...|++++
T Consensus 1059 ai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nld-rAiE~Aerv------n~p~vWsqLAKAql~~G~~kE 1123 (1630)
T 1xi4_A 1059 AISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLD-RAYEFAERC------NEPAVWSQLAKAQLQKGMVKE 1123 (1630)
T ss_pred HHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHH-HHHHHHHhc------CCHHHHHHHHHHHHhCCCHHH
Confidence 4455666666666665311 1111122221 445555 555555432 234556666666666666666
Q ss_pred HHHHhccCCCCChhhHHHHHHHHHcCCChHHHHHHhccCCC--CChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC
Q 047840 85 ARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPE--RNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPN 162 (445)
Q Consensus 85 a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~ 162 (445)
|...|.+. .|...|..++.++.+.|++++|.+.|....+ +++...+.++.+|++.+++++..... . .|+
T Consensus 1124 AIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI----~---~~n 1194 (1630)
T 1xi4_A 1124 AIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI----N---GPN 1194 (1630)
T ss_pred HHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHH----h---CCC
Confidence 66666553 4455566666666666666666666654432 22222334666666666665422221 1 234
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCCCChhhHHHHHHHHHhc
Q 047840 163 ESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMN 242 (445)
Q Consensus 163 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~ 242 (445)
...+..+...|...|++++|..+|..+ ..|..+..+|++.|+++.|.+.+++. .+..+|..+-.+|...
T Consensus 1195 ~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA--~n~~aWkev~~acve~ 1263 (1630)
T 1xi4_A 1195 NAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDG 1263 (1630)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh--CCHHHHHHHHHHHhhh
Confidence 445555666666666666666666653 25666666666666666666666655 3445666666666666
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHh--cCChHHH
Q 047840 243 GDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP-QLEHYACVVDLLAR--AGMVEEA 319 (445)
Q Consensus 243 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~--~g~~~~A 319 (445)
|++..|...... +..+...+..++..|.+.|.+++|+.+++... ++.+ ....|+-|..+|++ -++..++
T Consensus 1264 ~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL---~LeraH~gmftELaiLyaKy~peklmEh 1335 (1630)
T 1xi4_A 1264 KEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAAL---GLERAHMGMFTELAILYSKFKPQKMREH 1335 (1630)
T ss_pred hHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh---ccChhHhHHHHHHHHHHHhCCHHHHHHH
Confidence 666666554432 22345556677777778888888888887666 3332 24455555555554 3445555
Q ss_pred HHHHHHHhcCCCCC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHH------------hCCCCchhHHHHHHHHHH
Q 047840 320 EKFIEEKMGGLGGG------DANVWGALLSACRIYGKIEVGNRVWRKLAE------------MGITDFSTHVLSYNIYKE 381 (445)
Q Consensus 320 ~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------------~~~~~~~~~~~l~~~~~~ 381 (445)
.++|..-. +++| +...|..+...|.+.|+++.|....-+-.. ..+.++..|...+..|..
T Consensus 1336 lk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~ 1413 (1630)
T 1xi4_A 1336 LELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLE 1413 (1630)
T ss_pred HHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHh
Confidence 55555332 3333 456688888888888888877722211111 134466666666666666
Q ss_pred cC
Q 047840 382 AG 383 (445)
Q Consensus 382 ~g 383 (445)
.+
T Consensus 1414 ~~ 1415 (1630)
T 1xi4_A 1414 FK 1415 (1630)
T ss_pred hC
Confidence 55
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-17 Score=161.08 Aligned_cols=147 Identities=16% Similarity=0.123 Sum_probs=121.4
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHH---HcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHH
Q 047840 229 AGAWNAMISGVAMNGDAKKSLELFDRMV---KSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYAC 305 (445)
Q Consensus 229 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~---~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 305 (445)
..+|+++|.+|++.|+.++|.++|.+|. ..|+.||..|||++|.+|++.|++++|.++|++|... |+.||..||++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~-G~~PDvvTYnt 205 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA-GLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-TCCCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCcHHHHHH
Confidence 3489999999999999999999998876 4589999999999999999999999999999999988 99999999999
Q ss_pred HHHHHHhcCCh-HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---------CchhHHHH
Q 047840 306 VVDLLARAGMV-EEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT---------DFSTHVLS 375 (445)
Q Consensus 306 l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---------~~~~~~~l 375 (445)
+|+++++.|+. ++|.++|++|.+.|+.||..+|++++.++.+. .+++.+.+..|. ...+...|
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~-------~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL 278 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA-------TVLKAVHKVKPTFSLPPQLPPPVNTSKLL 278 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH-------HHHHHHGGGCCCCCCCCCCCCCCCCCTTT
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH-------HHHHHHHHhCcccCCCCCCcccccchHHH
Confidence 99999999985 78999999999999999999999998765542 333444333332 12233456
Q ss_pred HHHHHHcC
Q 047840 376 YNIYKEAG 383 (445)
Q Consensus 376 ~~~~~~~g 383 (445)
-+.|.+.+
T Consensus 279 ~dl~s~d~ 286 (1134)
T 3spa_A 279 RDVYAKDG 286 (1134)
T ss_dssp HHHHCCCS
T ss_pred HHHHccCC
Confidence 66777655
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.4e-16 Score=145.38 Aligned_cols=374 Identities=9% Similarity=-0.017 Sum_probs=251.3
Q ss_pred chhhcCCchHHHHHHHHHHhcCCCCCcccHHHHHHHhhhcCCc---hhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcC
Q 047840 4 GYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPL---ENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVH 80 (445)
Q Consensus 4 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (445)
.+.+.|++++|+.+|++..+.| +...+..+...+...|+. + .|..+++...+. ++..+..+...+...+
T Consensus 12 ~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~-~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~ 83 (452)
T 3e4b_A 12 EALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIK-QAEATYRAAADT----SPRAQARLGRLLAAKP 83 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC---------------------------------CHHHHHHHHHTC-
T ss_pred HHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHH-HHHHHHHHHHhC----CHHHHHHHHHHHHhCC
Confidence 4577899999999999998876 344455555566667777 7 899999888764 4555666666555554
Q ss_pred -----CHHHHHHHhccCCCC-ChhhHHHHHHHHHcCCChHH---HHHHhccCCC-CChhhHHHHHHHHHhcCCHhHHHHH
Q 047840 81 -----KMGTARALFDKSPDR-DVVTWTTMVDGYGKMGDFEN---ARELFEKMPE-RNAVSWSAIMAAYSRISDFKEVLSL 150 (445)
Q Consensus 81 -----~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~ 150 (445)
++++|...|++..++ +...+..|...|...+..++ +.+.+..... .++..+..+...|...+.++++...
T Consensus 84 ~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~ 163 (452)
T 3e4b_A 84 GATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDD 163 (452)
T ss_dssp -CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHH
T ss_pred CCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHH
Confidence 788999999887654 55678888888877665433 3444443332 3667788888899988877666665
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccC---ChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHcc----CChHHHHHHhhc
Q 047840 151 FRQMQEVGMKPNESGLVSVLTACAHLG---AITQGLWVHSYAKRYHLEKNVILATAVVDMYSKC----GHVHSALSVFEG 223 (445)
Q Consensus 151 ~~~~~~~~~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~ 223 (445)
...+...-...++..+..+...|...| +.++|...|++..+.| +++...+..|..+|... +++++|..+|++
T Consensus 164 a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~ 242 (452)
T 3e4b_A 164 VERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEK 242 (452)
T ss_dssp HHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHH
Confidence 444433222334448888888898899 9999999999999988 55555556677777665 799999999998
Q ss_pred CCCCChhhHHHHHHH-H--HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCC-----cHHHHHHHHHHhHHhhC
Q 047840 224 ISNKDAGAWNAMISG-V--AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAK-----MVRDGLNLFENMSAVYG 295 (445)
Q Consensus 224 ~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~ 295 (445)
....++.++..+... + ...+++++|+.+|++..+.| +...+..+...|. .| ++++|..+|++..
T Consensus 243 aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---- 314 (452)
T 3e4b_A 243 IAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---- 314 (452)
T ss_dssp HGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT----
T ss_pred HcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh----
Confidence 774467788888877 4 56899999999999998876 5666666666666 44 9999999999887
Q ss_pred CCCChhHHHHHHHHHHh----cCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCC
Q 047840 296 VEPQLEHYACVVDLLAR----AGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRI----YGKIEVGNRVWRKLAEMGIT 367 (445)
Q Consensus 296 ~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~ 367 (445)
+-+...+..|...|.. ..++++|..+|++..+.| .+ .....|...|.. ..+.++|...|+++.+.+++
T Consensus 315 -~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g-~~--~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~ 390 (452)
T 3e4b_A 315 -GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG-QN--SADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP 390 (452)
T ss_dssp -TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT-CT--THHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH
T ss_pred -CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC-hH--HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH
Confidence 2356677777777766 349999999999998877 33 345566666654 35899999999999998875
Q ss_pred CchhHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 368 DFSTHVLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 368 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
........+......++..+|..+.++-.+.
T Consensus 391 ~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 391 EANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 4333333332233345667777777766543
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-17 Score=161.12 Aligned_cols=147 Identities=11% Similarity=0.083 Sum_probs=123.4
Q ss_pred hhhHHHHHHHHHcCCChHHHHHHhccCC-------CCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHH
Q 047840 97 VVTWTTMVDGYGKMGDFENARELFEKMP-------ERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSV 169 (445)
Q Consensus 97 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 169 (445)
..+|++||++|++.|++++|.++|++|. .||+.|||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 3489999999999999999999997753 589999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCh-hHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCCC-----ChhhHHHHHHHHHhcC
Q 047840 170 LTACAHLGAI-TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK-----DAGAWNAMISGVAMNG 243 (445)
Q Consensus 170 ~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~~ 243 (445)
|.++++.|+. +.|.+++++|.+.|+.||..+|+.++....+.+-++...++...+..+ .+.+...+.+.|.+.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccCC
Confidence 9999999985 789999999999999999999999998877765555555554444332 1334444555666544
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.70 E-value=1e-15 Score=132.55 Aligned_cols=244 Identities=9% Similarity=-0.025 Sum_probs=179.8
Q ss_pred hcCCHhHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHH
Q 047840 140 RISDFKEVLSLFRQMQEVGMK---PNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHS 216 (445)
Q Consensus 140 ~~~~~~~a~~~~~~~~~~~~~---p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 216 (445)
..|++++|++.|+++.+.... .+...+..+...+...|++++|...++++.+.. +.+..++..+..+|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 446777888888877764211 135566777777778888888888888877765 4466777778888888888888
Q ss_pred HHHHhhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHh
Q 047840 217 ALSVFEGISN---KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAV 293 (445)
Q Consensus 217 a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (445)
|...|+++.. .+..++..+...|...|++++|...|+++.+.. |+.......+..+...|++++|...++.....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 8888876643 356788888889999999999999999988853 44444444445556679999999999888764
Q ss_pred hCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCch
Q 047840 294 YGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGG---GDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFS 370 (445)
Q Consensus 294 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 370 (445)
.+++...+ .++..+...++.++|...+.+....... .+..++..+...+...|++++|...|+++++..|.+..
T Consensus 174 --~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 174 --SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp --SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred --CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 23444444 4677777888889999999998755311 12578889999999999999999999999999987654
Q ss_pred hHHHHHHHHHHcCChHHHHHHH
Q 047840 371 THVLSYNIYKEAGWDMEANKVR 392 (445)
Q Consensus 371 ~~~~l~~~~~~~g~~~~A~~~~ 392 (445)
.+ ..++...|++++|.+.+
T Consensus 251 ~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 EH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HH---HHHHHHHHHHHHC----
T ss_pred HH---HHHHHHHHHHHhhHHHH
Confidence 43 66788889999988766
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.7e-15 Score=131.01 Aligned_cols=248 Identities=8% Similarity=-0.015 Sum_probs=137.7
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCc--hhhhhHHHHHH
Q 047840 131 WSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKN--VILATAVVDMY 208 (445)
Q Consensus 131 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~ 208 (445)
+......+...|++++|+..|++..+.. +.+...+..+...+...|++++|...++++.+.+..++ ...+..+..++
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 3344455555566666666665555532 11333455555555555666666655555555221111 11244555555
Q ss_pred HccCChHHHHHHhhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHH
Q 047840 209 SKCGHVHSALSVFEGISN---KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLN 285 (445)
Q Consensus 209 ~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 285 (445)
...|++++|...|++..+ .+..++..+...|...|++++|+..|++..+.. +.+...+..+...+...+++++|..
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555554432 244455566666666666666666666655441 2234444444412223347777777
Q ss_pred HHHHhHHhhCCCCChhHHHHHHHHHHhcCC---hHHHHHHHHHHhcCC-CCCC------HHHHHHHHHHHHHcCChHHHH
Q 047840 286 LFENMSAVYGVEPQLEHYACVVDLLARAGM---VEEAEKFIEEKMGGL-GGGD------ANVWGALLSACRIYGKIEVGN 355 (445)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~g~~~~a~ 355 (445)
.++.+.+. .+.+...+..+..++...|+ +++|...+++..+.. -.|+ ..+|..+...|...|++++|.
T Consensus 164 ~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 164 SFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 77777653 12235555566666666666 666777776654431 1122 256777888888888888888
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHc
Q 047840 356 RVWRKLAEMGITDFSTHVLSYNIYKEA 382 (445)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~l~~~~~~~ 382 (445)
+.++++++..|+++.+...+.......
T Consensus 242 ~~~~~al~~~p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 242 AAWKNILALDPTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp HHHHHHHHHCTTCHHHHHHHC------
T ss_pred HHHHHHHhcCccHHHHHHHhhhhhccc
Confidence 888888888888887777666554443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.69 E-value=1.1e-14 Score=124.22 Aligned_cols=209 Identities=10% Similarity=0.014 Sum_probs=127.5
Q ss_pred hhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHH
Q 047840 128 AVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDM 207 (445)
Q Consensus 128 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 207 (445)
...|..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~----------- 103 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SR----------- 103 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT-----------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cC-----------
Confidence 3445555556666666666666666655532 2244455555555555555555555555554442 11
Q ss_pred HHccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhhcCCcHHHHHHH
Q 047840 208 YSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQP-TETTFVAVLTTCTHAKMVRDGLNL 286 (445)
Q Consensus 208 ~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~ 286 (445)
+...+..+...+...|++++|++.++++...+..| +...+..+...+...|++++|...
T Consensus 104 --------------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 163 (252)
T 2ho1_A 104 --------------------NARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEY 163 (252)
T ss_dssp --------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred --------------------cHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 23344445555556666666666666655522233 344555666666777777777777
Q ss_pred HHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 047840 287 FENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366 (445)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 366 (445)
++++.+. .+.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+.++|.+.++++.+..|
T Consensus 164 ~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p 240 (252)
T 2ho1_A 164 FEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP 240 (252)
T ss_dssp HHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 7777653 12345666777777777777777777777776655 45666777777777777888888888888777777
Q ss_pred CCchhH
Q 047840 367 TDFSTH 372 (445)
Q Consensus 367 ~~~~~~ 372 (445)
.++...
T Consensus 241 ~~~~~~ 246 (252)
T 2ho1_A 241 GSLEYQ 246 (252)
T ss_dssp TSHHHH
T ss_pred CCHHHH
Confidence 765443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=1.2e-15 Score=129.46 Aligned_cols=214 Identities=13% Similarity=0.087 Sum_probs=119.7
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHH
Q 047840 129 VSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMY 208 (445)
Q Consensus 129 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 208 (445)
..|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+..
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------------- 87 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD--------------- 87 (243)
T ss_dssp ------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---------------
Confidence 344444455555555555555555554422 2234444444444444444444444444444332
Q ss_pred HccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHH
Q 047840 209 SKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFE 288 (445)
Q Consensus 209 ~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 288 (445)
..+..++..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|...++
T Consensus 88 -----------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 149 (243)
T 2q7f_A 88 -----------------SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQ 149 (243)
T ss_dssp -----------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred -----------------CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 1133445555566666667777777777666653 2355566666677777777777777777
Q ss_pred HhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 047840 289 NMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITD 368 (445)
Q Consensus 289 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 368 (445)
++... .+.+...+..+...+...|++++|...++++.+.. +.+..++..+..++...|++++|...++++.+..|++
T Consensus 150 ~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 226 (243)
T 2q7f_A 150 RAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDH 226 (243)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTC
T ss_pred HHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcch
Confidence 77653 23345666677777777777777777777776654 4566777777777777777888888888777777777
Q ss_pred chhHHHHHHHH
Q 047840 369 FSTHVLSYNIY 379 (445)
Q Consensus 369 ~~~~~~l~~~~ 379 (445)
+.++..+....
T Consensus 227 ~~~~~~~~~l~ 237 (243)
T 2q7f_A 227 MLALHAKKLLG 237 (243)
T ss_dssp HHHHHHHTC--
T ss_pred HHHHHHHHHHH
Confidence 66666554443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.68 E-value=4.8e-15 Score=133.48 Aligned_cols=249 Identities=10% Similarity=0.002 Sum_probs=197.9
Q ss_pred ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC-hhHHHHHHHHHHHcCCCCchhhhhHHH
Q 047840 127 NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA-ITQGLWVHSYAKRYHLEKNVILATAVV 205 (445)
Q Consensus 127 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~ 205 (445)
+...|+.+...+.+.|++++|++.|++.+..+ +-+...|..+..++...|+ +++|+..++++++.. +.+..+|..+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 34567778888888888999999988888753 2257778888888888886 899999888888876 55777888888
Q ss_pred HHHHccCChHHHHHHhhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc-CCcHH
Q 047840 206 DMYSKCGHVHSALSVFEGISN---KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTH-AKMVR 281 (445)
Q Consensus 206 ~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~~~~~ 281 (445)
.++...|++++|+..|+++.. .+..+|..+..++...|++++|+..|+++.+.... +...|+.+..++.. .|..+
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcch
Confidence 888888898888888887654 46778888888999999999999999999887433 67788888888887 56556
Q ss_pred HH-----HHHHHHhHHhhCCCCChhHHHHHHHHHHhcC--ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcC-----
Q 047840 282 DG-----LNLFENMSAVYGVEPQLEHYACVVDLLARAG--MVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYG----- 349 (445)
Q Consensus 282 ~a-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----- 349 (445)
+| +..+++.... -+-+...|..+..++...| ++++|.+.+.++ +.. +.+...+..++..|...|
T Consensus 253 eA~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp HHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhccccc
Confidence 66 4778888764 1334678888888888887 689999999888 444 667888999999998864
Q ss_pred ---C-hHHHHHHHHHH-HHhCCCCchhHHHHHHHHHHc
Q 047840 350 ---K-IEVGNRVWRKL-AEMGITDFSTHVLSYNIYKEA 382 (445)
Q Consensus 350 ---~-~~~a~~~~~~~-~~~~~~~~~~~~~l~~~~~~~ 382 (445)
+ .++|+++++++ .+.+|.....|..++..+...
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 2 58999999999 899999888888877766543
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.2e-14 Score=125.63 Aligned_cols=232 Identities=7% Similarity=-0.062 Sum_probs=191.4
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCC--CChh----hHHHHH
Q 047840 163 ESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN--KDAG----AWNAMI 236 (445)
Q Consensus 163 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~----~~~~l~ 236 (445)
...+......+...|++++|...++++.+.. +.+...+..+..+|...|++++|...|++... ++.. +|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 3445667788899999999999999999875 45666888899999999999999999987654 2322 488899
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCCh
Q 047840 237 SGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMV 316 (445)
Q Consensus 237 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 316 (445)
..+...|++++|+..|++..+... .+...+..+...+...|++++|...+++..+. .+.+...+..+...+...+++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~ 158 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEY 158 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988643 35678889999999999999999999999853 234566777777344456699
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHhC---CCC-----chhHHHHHHHHHHcCCh
Q 047840 317 EEAEKFIEEKMGGLGGGDANVWGALLSACRIYGK---IEVGNRVWRKLAEMG---ITD-----FSTHVLSYNIYKEAGWD 385 (445)
Q Consensus 317 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~---~~~-----~~~~~~l~~~~~~~g~~ 385 (445)
++|.+.|+++.+.. +.+...+..+..++...|+ .++|...++++++.. |+. ..++..++..|...|++
T Consensus 159 ~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (272)
T 3u4t_A 159 VKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK 237 (272)
T ss_dssp HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCH
Confidence 99999999998776 5668888889999999998 888999999999865 331 25788899999999999
Q ss_pred HHHHHHHHHHHhcC
Q 047840 386 MEANKVRKLISETG 399 (445)
Q Consensus 386 ~~A~~~~~~m~~~~ 399 (445)
++|.+.+++..+..
T Consensus 238 ~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 238 VKADAAWKNILALD 251 (272)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999988653
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=7e-14 Score=120.92 Aligned_cols=225 Identities=11% Similarity=0.044 Sum_probs=139.2
Q ss_pred ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCChhHHHHHHHHHHHcCCCCchhhhh
Q 047840 127 NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH----LGAITQGLWVHSYAKRYHLEKNVILAT 202 (445)
Q Consensus 127 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 202 (445)
++.++..+...+...|++++|++.|++..+. .+...+..+...+.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4456666677777777777777777777662 244566666667776 777777777777777664 455556
Q ss_pred HHHHHHHc----cCChHHHHHHhhcCCC-CChhhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 047840 203 AVVDMYSK----CGHVHSALSVFEGISN-KDAGAWNAMISGVAM----NGDAKKSLELFDRMVKSGTQPTETTFVAVLTT 273 (445)
Q Consensus 203 ~l~~~~~~----~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 273 (445)
.+...|.. .+++++|...|++..+ .+..++..+...|.. .+++++|+..|++..+.+ +...+..+...
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 66666666 6666666666654433 244555566666666 666666666666666643 34444455555
Q ss_pred hhc----CCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHh----cCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 047840 274 CTH----AKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLAR----AGMVEEAEKFIEEKMGGLGGGDANVWGALLSAC 345 (445)
Q Consensus 274 ~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 345 (445)
|.. .+++++|...|++..+. .+...+..+...|.. .+++++|...|++..+.+ +...+..+...|
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~ 228 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQ 228 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHH
Confidence 554 66666666666666543 234455556666666 666666666666665543 145555566666
Q ss_pred HH----cCChHHHHHHHHHHHHhCCC
Q 047840 346 RI----YGKIEVGNRVWRKLAEMGIT 367 (445)
Q Consensus 346 ~~----~g~~~~a~~~~~~~~~~~~~ 367 (445)
.. .+++++|.+.|+++.+.+|+
T Consensus 229 ~~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 229 YNGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp HTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred HcCCCcccCHHHHHHHHHHHHHcCCH
Confidence 65 66666666666666666654
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.67 E-value=3e-15 Score=124.57 Aligned_cols=209 Identities=11% Similarity=0.038 Sum_probs=125.6
Q ss_pred ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHH
Q 047840 127 NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVD 206 (445)
Q Consensus 127 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 206 (445)
+...+..+...+.+.|++++|+..|++..+.. +.+...+..+...+.+.|++++|...++++.+.. |.+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 45566677777777777777777777776643 2356667777777777777777777777777664 344555555555
Q ss_pred HHHccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHH
Q 047840 207 MYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNL 286 (445)
Q Consensus 207 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 286 (445)
++...+.. . .. .+...|++++|+..|++..+... -+...+..+...+...|++++|...
T Consensus 82 ~~~~~~~~---------~--~~---------~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~ 140 (217)
T 2pl2_A 82 AYVALYRQ---------A--ED---------RERGKGYLEQALSVLKDAERVNP-RYAPLHLQRGLVYALLGERDKAEAS 140 (217)
T ss_dssp HHHHHHHT---------C--SS---------HHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHhhhh---------h--hh---------hcccccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChHHHHHH
Confidence 55544100 0 00 01122677777777777766532 2455666666677777777777777
Q ss_pred HHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 047840 287 FENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLA 362 (445)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 362 (445)
|+++.+. . .+...+..+..+|...|++++|...|++.++.. +.+...+..+...+...|++++|...+++..
T Consensus 141 ~~~al~~-~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 141 LKQALAL-E--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHH-C--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHhc-c--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 7777765 3 566667777777777777777777777776655 5566677777777777777777777776553
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=8.5e-14 Score=120.40 Aligned_cols=224 Identities=8% Similarity=-0.027 Sum_probs=197.0
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHc----cCChHHHHHHhhcCCC-CChhhHHHHH
Q 047840 162 NESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSK----CGHVHSALSVFEGISN-KDAGAWNAMI 236 (445)
Q Consensus 162 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~-~~~~~~~~l~ 236 (445)
++.++..+...+...|++++|...|++..+.+ +...+..+...|.. .+++++|...|++..+ .++.++..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 56778888899999999999999999999843 55778889999999 9999999999987654 4777889999
Q ss_pred HHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc----CCcHHHHHHHHHHhHHhhCCCCChhHHHHHHH
Q 047840 237 SGVAM----NGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTH----AKMVRDGLNLFENMSAVYGVEPQLEHYACVVD 308 (445)
Q Consensus 237 ~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 308 (445)
..|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...|++..+. + +...+..+..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~ 154 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGS 154 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHH
Confidence 99999 999999999999998875 67788888888888 99999999999999875 3 5667788888
Q ss_pred HHHh----cCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 047840 309 LLAR----AGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRI----YGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYK 380 (445)
Q Consensus 309 ~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 380 (445)
.|.. .+++++|...|++..+.+ ++..+..+...|.. .+++++|...++++.+.+| +..+..++.+|.
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~ 229 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQY 229 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHH
Confidence 8888 999999999999998764 56788889999999 9999999999999999876 667889999999
Q ss_pred H----cCChHHHHHHHHHHHhcCC
Q 047840 381 E----AGWDMEANKVRKLISETGM 400 (445)
Q Consensus 381 ~----~g~~~~A~~~~~~m~~~~~ 400 (445)
. .+++++|.+.+++..+.|.
T Consensus 230 ~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 230 NGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp TTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred cCCCcccCHHHHHHHHHHHHHcCC
Confidence 9 9999999999999987764
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.1e-14 Score=119.05 Aligned_cols=135 Identities=10% Similarity=-0.015 Sum_probs=60.9
Q ss_pred HHHHHHHHhc-CChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHH
Q 047840 233 NAMISGVAMN-GDAKKSLELFDRMVKSGTQPT-ETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLL 310 (445)
Q Consensus 233 ~~l~~~~~~~-~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 310 (445)
..+...+... |++++|+..++++.+.+..|+ ...+..+...+...|++++|...++++.+. .+.+...+..+..++
T Consensus 80 ~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~ 157 (225)
T 2vq2_A 80 NNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTK 157 (225)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHH
Confidence 3334444444 444444444444444211121 233444444444555555555555544432 112244444444555
Q ss_pred HhcCChHHHHHHHHHHhcCCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCch
Q 047840 311 ARAGMVEEAEKFIEEKMGGLGG-GDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFS 370 (445)
Q Consensus 311 ~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 370 (445)
...|++++|...++++.+.. + .+...+..+...+...|+.+.+..+++.+.+..|+++.
T Consensus 158 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 217 (225)
T 2vq2_A 158 MLAGQLGDADYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEE 217 (225)
T ss_dssp HHHTCHHHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHH
Confidence 55555555555555544433 2 34444444444445555555555555555555554443
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.5e-14 Score=119.67 Aligned_cols=199 Identities=13% Similarity=0.053 Sum_probs=162.7
Q ss_pred chhhhhHHHHHHHccCChHHHHHHhhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 047840 197 NVILATAVVDMYSKCGHVHSALSVFEGISN---KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTT 273 (445)
Q Consensus 197 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 273 (445)
+..++..+...+...|++++|...|+++.. .+...+..+...+...|++++|.+.++++.... +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 344455555566666666666666654432 245567778888888899999999999888763 3367788889999
Q ss_pred hhcC-CcHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCh
Q 047840 274 CTHA-KMVRDGLNLFENMSAVYGVEPQ-LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKI 351 (445)
Q Consensus 274 ~~~~-~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 351 (445)
+... |++++|...++.+... +..|+ ...+..+..++...|++++|...++++.+.. +.+...+..+...+...|++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHhcCcHHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 9999 9999999999999862 33443 6778888999999999999999999998766 56788999999999999999
Q ss_pred HHHHHHHHHHHHhCC-CCchhHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 352 EVGNRVWRKLAEMGI-TDFSTHVLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 352 ~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
++|...++++.+..| .++..+..++..+...|+.++|..+++.+.+.
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 999999999999999 88888989999999999999999999998754
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.2e-14 Score=134.86 Aligned_cols=345 Identities=13% Similarity=0.067 Sum_probs=237.4
Q ss_pred HHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCH---HHHHHHhccCCCCChhhHHHHHHHHHcCC
Q 047840 35 PLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKM---GTARALFDKSPDRDVVTWTTMVDGYGKMG 111 (445)
Q Consensus 35 ~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~l~~~~~~~g 111 (445)
.+...+.+.|+++ .|..+++...+.| +...+..|...|...|+. ++|...|++..+.++..+..+...+...+
T Consensus 8 ~la~~~~~~g~~~-~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~ 83 (452)
T 3e4b_A 8 RLANEALKRGDTV-TAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKP 83 (452)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC-
T ss_pred HHHHHHHhCCCHH-HHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCC
Confidence 3556677889999 9999999998876 334455666777778888 99999999988777778888888666655
Q ss_pred -----ChHHHHHHhccCCCC-ChhhHHHHHHHHHhcCCHhH---HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHH
Q 047840 112 -----DFENARELFEKMPER-NAVSWSAIMAAYSRISDFKE---VLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQG 182 (445)
Q Consensus 112 -----~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 182 (445)
++++|...|++..++ +...+..|...|...+..++ +.+.+......| +......+...|...+.++++
T Consensus 84 ~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~ 160 (452)
T 3e4b_A 84 GATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQH 160 (452)
T ss_dssp -CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGG
T ss_pred CCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccC
Confidence 788999999988764 55678888888887765444 455555555444 455667778888888866665
Q ss_pred HHHHHHHHHcCCCCchhhhhHHHHHHHccC---ChHHHHHHhhcCCCC---ChhhHHHHHHHHHhc----CChHHHHHHH
Q 047840 183 LWVHSYAKRYHLEKNVILATAVVDMYSKCG---HVHSALSVFEGISNK---DAGAWNAMISGVAMN----GDAKKSLELF 252 (445)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~----~~~~~a~~~~ 252 (445)
......+.+.-...++..+..|..+|...| +.++|...|++..+. +...+..+...|... +++++|+.+|
T Consensus 161 ~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~ 240 (452)
T 3e4b_A 161 LDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALL 240 (452)
T ss_dssp HHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHH
Confidence 555444433323345558888999999999 999999999876543 333446677777654 7999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHH-h--hcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcC-----ChHHHHHHHH
Q 047840 253 DRMVKSGTQPTETTFVAVLTT-C--THAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAG-----MVEEAEKFIE 324 (445)
Q Consensus 253 ~~m~~~~~~p~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~ 324 (445)
++.. .| +...+..+... + ...+++++|..+|++..+. | +...+..|...|. .| ++++|...|+
T Consensus 241 ~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~ 311 (452)
T 3e4b_A 241 EKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAHFE 311 (452)
T ss_dssp HHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHH
T ss_pred HHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHH
Confidence 9987 43 34445555554 3 4589999999999999864 3 6677777887777 55 9999999999
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH----cCChHHHHHHHHHHH
Q 047840 325 EKMGGLGGGDANVWGALLSACRI----YGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKE----AGWDMEANKVRKLIS 396 (445)
Q Consensus 325 ~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~ 396 (445)
+.. +-++..+..|...|.. ..+.++|...|+++.+.+ ++.....++.+|.. ..+..+|...++...
T Consensus 312 ~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~ 385 (452)
T 3e4b_A 312 KAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG--QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAK 385 (452)
T ss_dssp TTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT--CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHH
T ss_pred HHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC--hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 986 4577788888887776 338999999999998765 45678889988875 468999999999998
Q ss_pred hcCCc
Q 047840 397 ETGMK 401 (445)
Q Consensus 397 ~~~~~ 401 (445)
+.|..
T Consensus 386 ~~g~~ 390 (452)
T 3e4b_A 386 AQDTP 390 (452)
T ss_dssp TTCCH
T ss_pred HCCCH
Confidence 87763
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=6.3e-15 Score=125.02 Aligned_cols=199 Identities=10% Similarity=0.064 Sum_probs=157.0
Q ss_pred chhhhhHHHHHHHccCChHHHHHHhhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 047840 197 NVILATAVVDMYSKCGHVHSALSVFEGISN---KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTT 273 (445)
Q Consensus 197 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 273 (445)
....+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|+..++++.+.. +.+...+..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 345566666677777777777777776543 356678888888999999999999999988864 3467888889999
Q ss_pred hhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHH
Q 047840 274 CTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEV 353 (445)
Q Consensus 274 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 353 (445)
+...|++++|...++++.+. .+.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999875 24567788899999999999999999999988766 5678899999999999999999
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 047840 354 GNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETG 399 (445)
Q Consensus 354 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 399 (445)
|...++++.+..|.++.++..++.+|...|++++|.+.++++.+..
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 9999999999999999999999999999999999999999987753
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.65 E-value=2.2e-14 Score=122.50 Aligned_cols=199 Identities=10% Similarity=-0.024 Sum_probs=164.9
Q ss_pred hhhhhHHHHHHHccCChHHHHHHhhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 047840 198 VILATAVVDMYSKCGHVHSALSVFEGISN---KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTC 274 (445)
Q Consensus 198 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 274 (445)
...+..+...+...|++++|...|+++.. .+..++..+...+...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 34455555566666666666666655432 355677778888888999999999999988764 33677888899999
Q ss_pred hcCCcHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHH
Q 047840 275 THAKMVRDGLNLFENMSAVYGVEP-QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEV 353 (445)
Q Consensus 275 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 353 (445)
...|++++|..+++++... +..| +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++
T Consensus 116 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQD-TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhHHHHHHHHHHHHHhC-ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999862 3455 46677888999999999999999999988766 5678899999999999999999
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 047840 354 GNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETG 399 (445)
Q Consensus 354 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 399 (445)
|...++++.+..|.+...+..++.++...|++++|.+.++++.+..
T Consensus 194 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 194 ARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999999999999999997653
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=7.4e-15 Score=134.74 Aligned_cols=93 Identities=14% Similarity=0.166 Sum_probs=44.3
Q ss_pred hHHHHHHHHHcCCChHHHHHHhccCCC--C-C----hhhHHHHHHHHHhcCCHhHHHHHHHHHHHc----CCCC-CHHHH
Q 047840 99 TWTTMVDGYGKMGDFENARELFEKMPE--R-N----AVSWSAIMAAYSRISDFKEVLSLFRQMQEV----GMKP-NESGL 166 (445)
Q Consensus 99 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p-~~~~~ 166 (445)
.+......+...|++++|...|++..+ | + ..+|..+...+...|++++|...+++.... +..| ...++
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 90 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 90 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 344444555555555555555555432 2 1 234445555555555555555555554321 1111 12344
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHH
Q 047840 167 VSVLTACAHLGAITQGLWVHSYAKR 191 (445)
Q Consensus 167 ~~l~~~~~~~~~~~~a~~~~~~~~~ 191 (445)
..+...+...|++++|...++++.+
T Consensus 91 ~~la~~~~~~g~~~~A~~~~~~al~ 115 (406)
T 3sf4_A 91 GNLGNTLKVLGNFDEAIVCCQRHLD 115 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4445555555555555555555443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.64 E-value=1.2e-14 Score=130.82 Aligned_cols=238 Identities=10% Similarity=0.035 Sum_probs=201.9
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCC-hHHHHHHhhcCCC---CChhhHHHHHHH
Q 047840 163 ESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGH-VHSALSVFEGISN---KDAGAWNAMISG 238 (445)
Q Consensus 163 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~---~~~~~~~~l~~~ 238 (445)
...|..+...+...|++++|+..++++++.. +-+..+|+.+..++...|+ +++|+..|+++.. .+..+|..+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 4567778888899999999999999999986 5678899999999999997 9999999998764 467799999999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHh-cCChH
Q 047840 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLAR-AGMVE 317 (445)
Q Consensus 239 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~ 317 (445)
+...|++++|+..|+++.+... -+...|..+..++...|++++|+..++++.+. -+-+...|+.+..++.. .|..+
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcch
Confidence 9999999999999999998743 37888999999999999999999999999975 23457889999999998 66658
Q ss_pred HH-----HHHHHHHhcCCCCCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcC-------
Q 047840 318 EA-----EKFIEEKMGGLGGGDANVWGALLSACRIYG--KIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG------- 383 (445)
Q Consensus 318 ~A-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------- 383 (445)
+| +..+++.+... +.+...|..+...+...| ++++|++.++++ +..|+++.++..++.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 88 58888888766 667889999999998888 689999999998 888999999999999999975
Q ss_pred --ChHHHHHHHHHH-HhcCCccCCcccE
Q 047840 384 --WDMEANKVRKLI-SETGMKKKPGCSV 408 (445)
Q Consensus 384 --~~~~A~~~~~~m-~~~~~~~~~~~~~ 408 (445)
..++|.++++++ .+ +.|.....|
T Consensus 331 ~~~~~~A~~~~~~l~~~--~DP~r~~~w 356 (382)
T 2h6f_A 331 EDILNKALELCEILAKE--KDTIRKEYW 356 (382)
T ss_dssp HHHHHHHHHHHHHHHHT--TCGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHH--hCchhHHHH
Confidence 258999999988 44 344333344
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.64 E-value=6.3e-15 Score=135.58 Aligned_cols=265 Identities=10% Similarity=0.014 Sum_probs=171.1
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHccCChhHHHHHHHHHHHc----C-CCCchhhhhH
Q 047840 133 AIMAAYSRISDFKEVLSLFRQMQEVGMKPNE----SGLVSVLTACAHLGAITQGLWVHSYAKRY----H-LEKNVILATA 203 (445)
Q Consensus 133 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~ 203 (445)
.+...+...|++++|+..|++..+.+.. +. ..+..+...+...|++++|...++++.+. + .+....++..
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 3445556666666666666666553211 22 34555555666666666666666555432 1 1122345555
Q ss_pred HHHHHHccCChHHHHHHhhcCCCC---------ChhhHHHHHHHHHhcCC-----------------hHHHHHHHHHHHH
Q 047840 204 VVDMYSKCGHVHSALSVFEGISNK---------DAGAWNAMISGVAMNGD-----------------AKKSLELFDRMVK 257 (445)
Q Consensus 204 l~~~~~~~g~~~~a~~~~~~~~~~---------~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~~m~~ 257 (445)
+...|...|++++|...|++.... ...++..+...|...|+ +++|++.+++..+
T Consensus 132 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 211 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK 211 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 666666666666666666544321 23356666677777777 7777777776543
Q ss_pred c----CCCC-CHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 047840 258 S----GTQP-TETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ----LEHYACVVDLLARAGMVEEAEKFIEEKMG 328 (445)
Q Consensus 258 ~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 328 (445)
. +..| ...++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|...+++..+
T Consensus 212 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 291 (411)
T 4a1s_A 212 LMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLA 291 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 2 1111 2346677777788889999998888887754211112 23677788888899999999998887754
Q ss_pred CCC--C---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC------CchhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 047840 329 GLG--G---GDANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT------DFSTHVLSYNIYKEAGWDMEANKVRKLISE 397 (445)
Q Consensus 329 ~~~--~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 397 (445)
... . ....++..+...+...|++++|...++++++..+. ...++..++.+|...|++++|.+.+++..+
T Consensus 292 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 292 LAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 320 0 12467788888899999999999999998875432 244777889999999999999998888765
Q ss_pred c
Q 047840 398 T 398 (445)
Q Consensus 398 ~ 398 (445)
.
T Consensus 372 ~ 372 (411)
T 4a1s_A 372 L 372 (411)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.3e-14 Score=125.47 Aligned_cols=239 Identities=7% Similarity=-0.094 Sum_probs=171.7
Q ss_pred cCCChHHHHHHhccCCCC-------ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhH
Q 047840 109 KMGDFENARELFEKMPER-------NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQ 181 (445)
Q Consensus 109 ~~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 181 (445)
..|++++|+..|+++.+. +..+|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 346667777777665541 35567778888888888888888888887753 3367788888888888888888
Q ss_pred HHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 047840 182 GLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN--KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSG 259 (445)
Q Consensus 182 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 259 (445)
|...++++.+.. +.+..++..+..+|.+.|++++|...|+++.+ |+.......+..+...|++++|...+++.....
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 888888888764 44677788888888888888888888887653 333333444445567789999999998877753
Q ss_pred CCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCC
Q 047840 260 TQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ-----LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGD 334 (445)
Q Consensus 260 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 334 (445)
+++...+ .++..+...++.++|...++..... .|+ ...+..+...|...|++++|...|++..+.. +.+
T Consensus 175 -~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~ 248 (275)
T 1xnf_A 175 -DKEQWGW-NIVEFYLGNISEQTLMERLKADATD---NTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN-VHN 248 (275)
T ss_dssp -CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCS---HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-CTT
T ss_pred -CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcc---cccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-chh
Confidence 3344444 3666677778888999988887642 332 5678888999999999999999999998765 334
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHH
Q 047840 335 ANVWGALLSACRIYGKIEVGNRVW 358 (445)
Q Consensus 335 ~~~~~~l~~~~~~~g~~~~a~~~~ 358 (445)
... ...++...|++++|++.+
T Consensus 249 ~~~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 FVE---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CHH---HHHHHHHHHHHHHC----
T ss_pred HHH---HHHHHHHHHHHHhhHHHH
Confidence 333 355677778888887766
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.63 E-value=8.2e-14 Score=112.69 Aligned_cols=167 Identities=12% Similarity=0.052 Sum_probs=144.0
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHH
Q 047840 228 DAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVV 307 (445)
Q Consensus 228 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 307 (445)
++..|..+...|...|++++|++.|++..+... -+...+..+...+.+.|++++|...+...... .+.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP-NNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 456788888899999999999999999888643 36778888888899999999999999998864 234566777778
Q ss_pred HHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHH
Q 047840 308 DLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDME 387 (445)
Q Consensus 308 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 387 (445)
..+...++++.|...+.+..... +.+...+..+...+...|++++|++.|+++++..|.++.++..++.+|.+.|++++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 88889999999999999887766 66788899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc
Q 047840 388 ANKVRKLISET 398 (445)
Q Consensus 388 A~~~~~~m~~~ 398 (445)
|.+.+++..+.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 99999988764
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.63 E-value=8.4e-15 Score=130.50 Aligned_cols=267 Identities=13% Similarity=0.056 Sum_probs=185.9
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHccCChhHHHHHHHHHHHc----CCC-Cchhhh
Q 047840 131 WSAIMAAYSRISDFKEVLSLFRQMQEVGMKPN----ESGLVSVLTACAHLGAITQGLWVHSYAKRY----HLE-KNVILA 201 (445)
Q Consensus 131 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~ 201 (445)
+......+...|++++|...|+++.+... .+ ...+..+...+...|++++|...++++.+. +.+ ....++
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 33445566677777777777777766421 12 245566666777777777777777665432 111 124556
Q ss_pred hHHHHHHHccCChHHHHHHhhcCCC-----CC----hhhHHHHHHHHHhcCC--------------------hHHHHHHH
Q 047840 202 TAVVDMYSKCGHVHSALSVFEGISN-----KD----AGAWNAMISGVAMNGD--------------------AKKSLELF 252 (445)
Q Consensus 202 ~~l~~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~--------------------~~~a~~~~ 252 (445)
..+...+...|++++|...+++..+ .+ ..++..+...+...|+ +++|...+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 6677777777777777777765432 11 2366677777888888 88888888
Q ss_pred HHHHHc----CCCC-CHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCC----hhHHHHHHHHHHhcCChHHHHHHH
Q 047840 253 DRMVKS----GTQP-TETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ----LEHYACVVDLLARAGMVEEAEKFI 323 (445)
Q Consensus 253 ~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~ 323 (445)
++.... +..| ....+..+...+...|++++|...+++......-.++ ..++..+...+...|++++|...+
T Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 246 (338)
T 3ro2_A 167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 246 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 776432 1111 2346777778888999999999999888754211122 236778888999999999999999
Q ss_pred HHHhcCCC-CCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC------CchhHHHHHHHHHHcCChHHHHHHH
Q 047840 324 EEKMGGLG-GGD----ANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT------DFSTHVLSYNIYKEAGWDMEANKVR 392 (445)
Q Consensus 324 ~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~ 392 (445)
++..+... .++ ..++..+...+...|++++|...++++++..+. ...++..++.+|.+.|++++|...+
T Consensus 247 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 326 (338)
T 3ro2_A 247 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFA 326 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 98754310 111 567888899999999999999999999885443 2447778999999999999999999
Q ss_pred HHHHhc
Q 047840 393 KLISET 398 (445)
Q Consensus 393 ~~m~~~ 398 (445)
++..+.
T Consensus 327 ~~a~~~ 332 (338)
T 3ro2_A 327 EKHLEI 332 (338)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 988764
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=8.5e-15 Score=134.34 Aligned_cols=296 Identities=8% Similarity=0.054 Sum_probs=205.7
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHhccCCC--C-C----hhhHHHHHHHHHcCCChHHHHHHhccCCC-----C----
Q 047840 63 GEDPFVVSSLLEFYSLVHKMGTARALFDKSPD--R-D----VVTWTTMVDGYGKMGDFENARELFEKMPE-----R---- 126 (445)
Q Consensus 63 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~---- 126 (445)
.+....+......+...|++++|...|++... | + ...+..+...+...|++++|...|++... .
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 34555667788889999999999999987653 3 2 35688888999999999999999887642 1
Q ss_pred ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHccCC--------------------hhH
Q 047840 127 NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGM-KPN----ESGLVSVLTACAHLGA--------------------ITQ 181 (445)
Q Consensus 127 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~~~--------------------~~~ 181 (445)
...++..+...+...|++++|...+++...... .++ ..++..+...+...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 255688888999999999999999998865311 112 3366777777888888 666
Q ss_pred HHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCCC--ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 047840 182 GLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK--DAGAWNAMISGVAMNGDAKKSLELFDRMVKSG 259 (445)
Q Consensus 182 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 259 (445)
|...+++..+. +.....+ ...++..+...+...|++++|+..+++..+..
T Consensus 166 A~~~~~~al~~----------------------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 217 (406)
T 3sf4_A 166 AVDFYEENLSL----------------------------VTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA 217 (406)
T ss_dssp HHHHHHHHHHH----------------------------HHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----------------------------HHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 66666555432 1111100 12245556666677777777777777665421
Q ss_pred C-CCC----HHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHHHhcCC
Q 047840 260 T-QPT----ETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ----LEHYACVVDLLARAGMVEEAEKFIEEKMGGL 330 (445)
Q Consensus 260 ~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 330 (445)
. .++ ..++..+...+...|++++|...+++......-.++ ..++..+...|...|++++|...+++..+..
T Consensus 218 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 297 (406)
T 3sf4_A 218 KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 297 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 0 111 236667777788888888888888877653211111 4567778888899999999999988875431
Q ss_pred C-CCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC------CCchhHHHHHHHHHHcCChH
Q 047840 331 G-GGD----ANVWGALLSACRIYGKIEVGNRVWRKLAEMGI------TDFSTHVLSYNIYKEAGWDM 386 (445)
Q Consensus 331 ~-~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~ 386 (445)
. .++ ..++..+...+...|++++|.+.++++.+..+ ....++..++.++...|+..
T Consensus 298 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 298 QELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 0 112 56788888999999999999999999888532 23556777888888888763
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.3e-14 Score=133.90 Aligned_cols=193 Identities=6% Similarity=-0.067 Sum_probs=157.3
Q ss_pred chhhhhHHHHHHHccCCh-HHHHHHhhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047840 197 NVILATAVVDMYSKCGHV-HSALSVFEGISN---KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLT 272 (445)
Q Consensus 197 ~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 272 (445)
+...+..+..++...|++ ++|...|++..+ .+..+|..+...|...|++++|+..|++..+. .|+...+..+..
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~ 178 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSM 178 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHH
Confidence 445555555566666666 666666655432 24567777888888888999999999888875 466788888888
Q ss_pred HhhcC---------CcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhc--------CChHHHHHHHHHHhcCCCC---
Q 047840 273 TCTHA---------KMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARA--------GMVEEAEKFIEEKMGGLGG--- 332 (445)
Q Consensus 273 ~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~--- 332 (445)
.+... |++++|...++++.+. .+.+...|..+..+|... |++++|...|++..+.. +
T Consensus 179 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~ 255 (474)
T 4abn_A 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD-RKAS 255 (474)
T ss_dssp HHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC-GGGG
T ss_pred HHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC-CCcc
Confidence 89888 9999999999999875 234577888899999888 99999999999998765 4
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHH
Q 047840 333 GDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKL 394 (445)
Q Consensus 333 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 394 (445)
.+...|..+..+|...|++++|.+.|+++++..|.++.++..++.++...|++++|.+.+.+
T Consensus 256 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 256 SNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 58899999999999999999999999999999999999999999999999999999875443
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.56 E-value=3.1e-12 Score=112.60 Aligned_cols=221 Identities=13% Similarity=0.094 Sum_probs=166.3
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-------cCCh-------hHHHHHHHHHHHcCCCCchhhhhHHHHHHHc
Q 047840 145 KEVLSLFRQMQEVGMKPNESGLVSVLTACAH-------LGAI-------TQGLWVHSYAKRYHLEKNVILATAVVDMYSK 210 (445)
Q Consensus 145 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~-------~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 210 (445)
++|..+|++..... +-+...|..++..+.. .|++ ++|..+|++..+.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 67778888887642 3366677777766653 4775 7888888888873224456678888888888
Q ss_pred cCChHHHHHHhhcCCC--C-Chh-hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-hhcCCcHHHHHH
Q 047840 211 CGHVHSALSVFEGISN--K-DAG-AWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTT-CTHAKMVRDGLN 285 (445)
Q Consensus 211 ~g~~~~a~~~~~~~~~--~-~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~~~~~~a~~ 285 (445)
.|++++|..+|++..+ | +.. +|..++..+.+.|++++|..+|++..+.+. ++...|...... +...|++++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888887654 2 343 788888888889999999999999887642 344444433333 223689999999
Q ss_pred HHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCC-CCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 047840 286 LFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGL-GGG--DANVWGALLSACRIYGKIEVGNRVWRKLA 362 (445)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 362 (445)
+|+...+.. +.+...|..++..+.+.|++++|..+|++.+... ++| ....|..++......|+.+.|..+++++.
T Consensus 191 ~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999988752 3457788888888999999999999999988762 344 46788888988889999999999999999
Q ss_pred HhCCCCc
Q 047840 363 EMGITDF 369 (445)
Q Consensus 363 ~~~~~~~ 369 (445)
+..|++.
T Consensus 269 ~~~p~~~ 275 (308)
T 2ond_A 269 TAFREEY 275 (308)
T ss_dssp HHTTTTT
T ss_pred HHccccc
Confidence 9888744
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.9e-14 Score=130.32 Aligned_cols=238 Identities=9% Similarity=0.033 Sum_probs=148.6
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHccCChhHHHHHHHHHHHc----C-CCCchh
Q 047840 130 SWSAIMAAYSRISDFKEVLSLFRQMQEV----GM-KPNESGLVSVLTACAHLGAITQGLWVHSYAKRY----H-LEKNVI 199 (445)
Q Consensus 130 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~ 199 (445)
.|..+...|...|++++|+..+++..+. +. +.....+..+...+...|++++|...++++.+. + .+....
T Consensus 88 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 167 (411)
T 4a1s_A 88 IYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGR 167 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHH
Confidence 3444555555555555555555544331 10 112234444555555555555555555554432 1 011233
Q ss_pred hhhHHHHHHHccCC-----------------hHHHHHHhhcCCC-----C----ChhhHHHHHHHHHhcCChHHHHHHHH
Q 047840 200 LATAVVDMYSKCGH-----------------VHSALSVFEGISN-----K----DAGAWNAMISGVAMNGDAKKSLELFD 253 (445)
Q Consensus 200 ~~~~l~~~~~~~g~-----------------~~~a~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~a~~~~~ 253 (445)
++..+...|...|+ +++|...+++... . ...++..+...+...|++++|+..++
T Consensus 168 ~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 247 (411)
T 4a1s_A 168 ALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQ 247 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 45555555555566 5555555544321 1 23366777788888888888888888
Q ss_pred HHHHcCC-CCC----HHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCC----ChhHHHHHHHHHHhcCChHHHHHHHH
Q 047840 254 RMVKSGT-QPT----ETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP----QLEHYACVVDLLARAGMVEEAEKFIE 324 (445)
Q Consensus 254 ~m~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~ 324 (445)
+..+... .++ ...+..+...+...|++++|...+++......-.. ...++..+...|...|++++|...++
T Consensus 248 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 327 (411)
T 4a1s_A 248 ERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHN 327 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7765311 011 23677788889999999999999988775421111 14567788889999999999999999
Q ss_pred HHhcCC----C-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 047840 325 EKMGGL----G-GGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT 367 (445)
Q Consensus 325 ~~~~~~----~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 367 (445)
+..+.. . .....++..+...|...|++++|.+.++++.+..+.
T Consensus 328 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 328 RHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 876431 0 112457888899999999999999999999987653
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.54 E-value=3.2e-13 Score=109.20 Aligned_cols=169 Identities=10% Similarity=0.068 Sum_probs=129.9
Q ss_pred chhhhhHHHHHHHccCChHHHHHHhhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 047840 197 NVILATAVVDMYSKCGHVHSALSVFEGISN---KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTT 273 (445)
Q Consensus 197 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 273 (445)
+..+|..+..+|.+.|++++|...|++..+ .+..++..+..+|.+.|++++|+..+.+...... .+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHHHH
Confidence 344555566666666666666666655432 3555677777778888888888888888877633 356667777777
Q ss_pred hhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHH
Q 047840 274 CTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEV 353 (445)
Q Consensus 274 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 353 (445)
+...++++.+...+...... .+.+...+..+..+|.+.|++++|++.|++.++.. +.+..+|..+..++...|++++
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 88889999999999888864 24457778888899999999999999999988776 6778899999999999999999
Q ss_pred HHHHHHHHHHhCCCCc
Q 047840 354 GNRVWRKLAEMGITDF 369 (445)
Q Consensus 354 a~~~~~~~~~~~~~~~ 369 (445)
|++.|+++++.+|.++
T Consensus 160 A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 160 AVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHhCCccCH
Confidence 9999999999888653
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.9e-14 Score=124.83 Aligned_cols=240 Identities=10% Similarity=0.048 Sum_probs=134.3
Q ss_pred ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHc------C
Q 047840 127 NAVSWSAIMAAYSRISDFKEVLSLFRQMQEV-------GMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRY------H 193 (445)
Q Consensus 127 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~ 193 (445)
+..++..+...+...|++++|...++++.+. ..+.....+..+...+...|++++|...++++... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3556777888888888888888888887662 12224456677777777888888888877777654 1
Q ss_pred C-CCchhhhhHHHHHHHccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCC-CHH
Q 047840 194 L-EKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKS------GTQP-TET 265 (445)
Q Consensus 194 ~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~~~p-~~~ 265 (445)
. +....++..+...|.. .|++++|...+++..+. +..| ...
T Consensus 106 ~~~~~~~~~~~l~~~~~~-------------------------------~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 154 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGK-------------------------------RGKYKEAEPLCKRALEIREKVLGKDHPDVAK 154 (311)
T ss_dssp TCHHHHHHHHHHHHHHHT-------------------------------TTCHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CChHHHHHHHHHHHHHHH-------------------------------cCcHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 1 1123344444444444 44555555544444332 1112 233
Q ss_pred HHHHHHHHhhcCCcHHHHHHHHHHhHHhh-----C-CCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCC-------CC
Q 047840 266 TFVAVLTTCTHAKMVRDGLNLFENMSAVY-----G-VEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGL-------GG 332 (445)
Q Consensus 266 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~ 332 (445)
.+..+...+...|++++|..+++++.... + .+....++..+..+|...|++++|...++++.+.. ..
T Consensus 155 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 234 (311)
T 3nf1_A 155 QLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVD 234 (311)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 45555666666677777776666665421 0 11123455666667777777777777776665320 01
Q ss_pred C-------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 047840 333 G-------DANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISE 397 (445)
Q Consensus 333 ~-------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 397 (445)
+ ....+..+...+...+.+.++...++......|..+.++..++.+|.+.|++++|.+.+++..+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 235 DENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ---CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1 1122333334444556666677777777777777777788888888888888888888877654
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.8e-13 Score=121.81 Aligned_cols=138 Identities=8% Similarity=0.038 Sum_probs=97.2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCC----h
Q 047840 230 GAWNAMISGVAMNGDAKKSLELFDRMVKS----GTQ-PTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ----L 300 (445)
Q Consensus 230 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~ 300 (445)
.++..+...+...|++++|...+++..+. +.. ....++..+...+...|++++|...+++......-.++ .
T Consensus 184 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 263 (338)
T 3ro2_A 184 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 263 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHH
Confidence 35666777777888888888888776543 111 11236677777888889999999988887653211122 4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHhcCC----C-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 047840 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGL----G-GGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT 367 (445)
Q Consensus 301 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 367 (445)
.++..+...|...|++++|...+++..+.. . .....++..+...+...|++++|...++++.+..+.
T Consensus 264 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 264 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 566778888999999999999998875431 0 111457788889999999999999999999886553
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.6e-13 Score=123.52 Aligned_cols=228 Identities=8% Similarity=-0.038 Sum_probs=136.7
Q ss_pred HHHHHccCChhHHHHHHHHHHHc----CCCC-chhhhhHHHHHHHccCChHHHHHHhhcCCC-----C-----ChhhHHH
Q 047840 170 LTACAHLGAITQGLWVHSYAKRY----HLEK-NVILATAVVDMYSKCGHVHSALSVFEGISN-----K-----DAGAWNA 234 (445)
Q Consensus 170 ~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~-----~~~~~~~ 234 (445)
...+...|++++|...++++.+. +.++ ...++..+..+|...|+++.|...+.+..+ + ...+++.
T Consensus 110 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 189 (383)
T 3ulq_A 110 GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL 189 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 33444555555555555555432 1111 223455555555555555555555544321 1 1235666
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHhhcCCcHHHHHHHHHHhHHhh---CC-CCChhHHHH
Q 047840 235 MISGVAMNGDAKKSLELFDRMVKSGT-QPT----ETTFVAVLTTCTHAKMVRDGLNLFENMSAVY---GV-EPQLEHYAC 305 (445)
Q Consensus 235 l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~-~~~~~~~~~ 305 (445)
+...|...|++++|+..+++..+... .++ ..++..+...|...|++++|...+++..... +. +....++..
T Consensus 190 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 269 (383)
T 3ulq_A 190 FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFL 269 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Confidence 67777777777777777776654210 011 2356677777888888888888887776521 11 223556777
Q ss_pred HHHHHHhcCChHHHHHHHHHHhcC----CCCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 047840 306 VVDLLARAGMVEEAEKFIEEKMGG----LGGGDANVWGALLSACRIYGK---IEVGNRVWRKLAEMGITDFSTHVLSYNI 378 (445)
Q Consensus 306 l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 378 (445)
+..+|...|++++|...+++..+. +-+.....+..+...+...|+ +++|+.++++. ...|....++..++..
T Consensus 270 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 270 ITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHH
Confidence 778888888888888888776543 111122335566677777777 66676666665 2222344567778888
Q ss_pred HHHcCChHHHHHHHHHHHhc
Q 047840 379 YKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 379 ~~~~g~~~~A~~~~~~m~~~ 398 (445)
|...|++++|.+.+++..+.
T Consensus 349 y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH
Confidence 88888888888888887654
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.51 E-value=6.3e-12 Score=110.60 Aligned_cols=214 Identities=10% Similarity=0.018 Sum_probs=174.1
Q ss_pred hHHHHHHHHHHHcCCCCchhhhhHHHHHHH-------ccCCh-------HHHHHHhhcCCC---C-ChhhHHHHHHHHHh
Q 047840 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYS-------KCGHV-------HSALSVFEGISN---K-DAGAWNAMISGVAM 241 (445)
Q Consensus 180 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~a~~~~~~~~~---~-~~~~~~~l~~~~~~ 241 (445)
++|...|+++.... +.++..|..++..+. +.|++ ++|..+|++... | +...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 67888999998864 667788888887775 35886 899999987654 2 55689999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCC-HH-HHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHH-hcCChHH
Q 047840 242 NGDAKKSLELFDRMVKSGTQPT-ET-TFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLA-RAGMVEE 318 (445)
Q Consensus 242 ~~~~~~a~~~~~~m~~~~~~p~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~ 318 (445)
.|++++|..+|++..+. .|+ .. .|..+...+.+.|++++|..+|++..+. .+++...|...+.... ..|++++
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999885 454 33 7888888899999999999999999853 2334455544433322 3799999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCC-CchhHHHHHHHHHHcCChHHHHHHHHH
Q 047840 319 AEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEM---GIT-DFSTHVLSYNIYKEAGWDMEANKVRKL 394 (445)
Q Consensus 319 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 394 (445)
|..+|++.++.. +.+...|..++..+.+.|++++|..+|+++++. .|+ ....|..++..+.+.|+.++|..++++
T Consensus 188 A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 188 AFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999988765 567899999999999999999999999999995 443 566888899999999999999999999
Q ss_pred HHhcC
Q 047840 395 ISETG 399 (445)
Q Consensus 395 m~~~~ 399 (445)
+.+..
T Consensus 267 a~~~~ 271 (308)
T 2ond_A 267 RFTAF 271 (308)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 87654
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=8.5e-14 Score=122.65 Aligned_cols=240 Identities=12% Similarity=0.083 Sum_probs=150.0
Q ss_pred ChhhHHHHHHHHHcCCChHHHHHHhccCCC--------C---ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHc------C
Q 047840 96 DVVTWTTMVDGYGKMGDFENARELFEKMPE--------R---NAVSWSAIMAAYSRISDFKEVLSLFRQMQEV------G 158 (445)
Q Consensus 96 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~ 158 (445)
+..++..+...+...|++++|..+|+++.+ . ...++..+...|...|++++|...+++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 456788899999999999999999998764 1 3456888899999999999999999998763 2
Q ss_pred CCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHc------CCCC-chhhhhHHHHHHHccCChHHHHHHhhcCCCCChh
Q 047840 159 MKP-NESGLVSVLTACAHLGAITQGLWVHSYAKRY------HLEK-NVILATAVVDMYSKCGHVHSALSVFEGISNKDAG 230 (445)
Q Consensus 159 ~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 230 (445)
-.| ....+..+...+...|++++|...++++.+. +..| ...++..+...+...|
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~------------------ 167 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQG------------------ 167 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTT------------------
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcC------------------
Confidence 222 4567888999999999999999999998764 1111 2233444444444444
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhh------CCC
Q 047840 231 AWNAMISGVAMNGDAKKSLELFDRMVKS------GTQP-TETTFVAVLTTCTHAKMVRDGLNLFENMSAVY------GVE 297 (445)
Q Consensus 231 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~ 297 (445)
++++|+++++++.+. +..| ...++..+...+...|++++|...++++.... ...
T Consensus 168 -------------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 234 (311)
T 3nf1_A 168 -------------KYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVD 234 (311)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred -------------CHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 445555444444332 1112 22345555555666666666666666655320 011
Q ss_pred CC-------hhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 047840 298 PQ-------LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT 367 (445)
Q Consensus 298 ~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 367 (445)
+. ...+..+...+...+.+.+|...+....... +.+..++..+..+|...|++++|.+.++++++..|.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 235 DENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp ---CCHHHHHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred cchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 11 1112222333445566666777777765443 445678889999999999999999999999887664
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.49 E-value=2e-12 Score=104.32 Aligned_cols=163 Identities=13% Similarity=0.023 Sum_probs=103.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHH
Q 047840 232 WNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLA 311 (445)
Q Consensus 232 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 311 (445)
+..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|...++.+.+. .+.+...+..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHH
Confidence 3344445555555555555555544331 224455555555566666666666666666543 1234555666666677
Q ss_pred hcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHH
Q 047840 312 RAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKV 391 (445)
Q Consensus 312 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 391 (445)
..|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+..|.++.++..++.++...|++++|.+.
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 7777777777777666554 456667777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHhc
Q 047840 392 RKLISET 398 (445)
Q Consensus 392 ~~~m~~~ 398 (445)
+++..+.
T Consensus 167 ~~~~~~~ 173 (186)
T 3as5_A 167 FKKANEL 173 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 7776543
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.4e-12 Score=126.83 Aligned_cols=165 Identities=10% Similarity=0.053 Sum_probs=141.3
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCC-ChhHHHHH
Q 047840 228 DAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP-QLEHYACV 306 (445)
Q Consensus 228 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l 306 (445)
+..+++.+...|.+.|++++|++.|++..+... -+...+..+..+|.+.|++++|+..|++..+. .| +...|..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P-~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~nL 83 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHH
Confidence 355788888888899999999999998887632 25678888888899999999999999998864 44 47788889
Q ss_pred HHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChH
Q 047840 307 VDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDM 386 (445)
Q Consensus 307 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 386 (445)
..+|...|++++|++.|++.++.. +.+...|..+..++...|++++|++.|+++++..|+++.++..++.+|...|+++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 999999999999999999988776 5678889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 047840 387 EANKVRKLISE 397 (445)
Q Consensus 387 ~A~~~~~~m~~ 397 (445)
+|.+.+++..+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99988877754
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.49 E-value=4.2e-11 Score=108.47 Aligned_cols=264 Identities=10% Similarity=0.002 Sum_probs=164.7
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHccCChhHHHHHHHHHHHcCC-CCc----hhhhhHH
Q 047840 134 IMAAYSRISDFKEVLSLFRQMQEVGMKPNES----GLVSVLTACAHLGAITQGLWVHSYAKRYHL-EKN----VILATAV 204 (445)
Q Consensus 134 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l 204 (445)
....+...|++++|...+++........+.. .+..+...+...|++++|...+++...... .++ ..++..+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3445556777777777777766543111221 344555666667777777777766654310 011 1234556
Q ss_pred HHHHHccCChHHHHHHhhcCCC-------C----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--C--CHHHHHH
Q 047840 205 VDMYSKCGHVHSALSVFEGISN-------K----DAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQ--P--TETTFVA 269 (445)
Q Consensus 205 ~~~~~~~g~~~~a~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~--p--~~~~~~~ 269 (445)
...+...|++++|...+++... + ....+..+...+...|++++|...+++....... + ...++..
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 6667777777777777765432 1 1224555667778888888888888877654221 1 2345666
Q ss_pred HHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHH-----HHHHHHHhcCChHHHHHHHHHHhcCCCCC---CHHHHHHH
Q 047840 270 VLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYA-----CVVDLLARAGMVEEAEKFIEEKMGGLGGG---DANVWGAL 341 (445)
Q Consensus 270 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l 341 (445)
+...+...|++++|...+++......-......+. ..+..+...|++++|...+++.......+ ....+..+
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~l 259 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 259 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHH
Confidence 77777888888888888888765421111111121 23344668888888888888876543111 13356677
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCC------CchhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 047840 342 LSACRIYGKIEVGNRVWRKLAEMGIT------DFSTHVLSYNIYKEAGWDMEANKVRKLISE 397 (445)
Q Consensus 342 ~~~~~~~g~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 397 (445)
...+...|++++|...++++.+..+. ...++..++.++...|++++|...+++...
T Consensus 260 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 260 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 78888888999998888888764332 113566678888888999988888887754
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.3e-12 Score=121.95 Aligned_cols=211 Identities=11% Similarity=0.003 Sum_probs=157.7
Q ss_pred HhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCh-hHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhh
Q 047840 144 FKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI-TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFE 222 (445)
Q Consensus 144 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 222 (445)
+++++..+++..... +.+...+..+...+...|++ ++|+..|+++.+.. +.+...+..+..+|.+.|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455555555544432 23566666777777777777 77777777777664 4456667777777777777777777776
Q ss_pred cCCC--CChhhHHHHHHHHHhc---------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcC--------CcHHHH
Q 047840 223 GISN--KDAGAWNAMISGVAMN---------GDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHA--------KMVRDG 283 (445)
Q Consensus 223 ~~~~--~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~--------~~~~~a 283 (445)
+..+ |+...+..+...+... |++++|+..|++..+.. +.+...+..+..+|... |++++|
T Consensus 162 ~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A 240 (474)
T 4abn_A 162 GALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQA 240 (474)
T ss_dssp HHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 6543 4455666777777777 88999999999888764 23577888888888887 889999
Q ss_pred HHHHHHhHHhhCCCC----ChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 047840 284 LNLFENMSAVYGVEP----QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359 (445)
Q Consensus 284 ~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 359 (445)
...|++..+. .| +...|..+..+|...|++++|.+.|++..+.. +.+...+..+..++...|++++|++.+.
T Consensus 241 ~~~~~~al~~---~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 241 LSAYAQAEKV---DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHH---CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHh---CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999864 44 67888899999999999999999999988766 6677888999999999998888887654
Q ss_pred HH
Q 047840 360 KL 361 (445)
Q Consensus 360 ~~ 361 (445)
++
T Consensus 317 ~~ 318 (474)
T 4abn_A 317 KT 318 (474)
T ss_dssp TC
T ss_pred cc
Confidence 43
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.47 E-value=2.1e-10 Score=110.23 Aligned_cols=212 Identities=8% Similarity=-0.058 Sum_probs=136.8
Q ss_pred HHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHH-HHhhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 047840 184 WVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSAL-SVFEGISN---KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSG 259 (445)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 259 (445)
.+|++++... +....+|...+..+...|+.++|. .+|++... .+...|...+....+.|+++.|.++|+++....
T Consensus 330 ~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l 408 (679)
T 4e6h_A 330 YVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRI 408 (679)
T ss_dssp HHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 3444444432 334445555555556667777775 77765543 244456667777777888888888888876531
Q ss_pred ---------CCCC------------HHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhc-CChH
Q 047840 260 ---------TQPT------------ETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARA-GMVE 317 (445)
Q Consensus 260 ---------~~p~------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~ 317 (445)
-.|+ ...|...+....+.|+.+.|..+|..+.+.. ..+....|...+..-.+. ++.+
T Consensus 409 ~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~-~~~~~~lyi~~A~lE~~~~~d~e 487 (679)
T 4e6h_A 409 HLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK-KLVTPDIYLENAYIEYHISKDTK 487 (679)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG-GGSCTHHHHHHHHHHHTTTSCCH
T ss_pred HHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHhCCCHH
Confidence 0132 2346666666667778888888888887530 112233343333323333 4478
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---CchhHHHHHHHHHHcCChHHHHHHHHH
Q 047840 318 EAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT---DFSTHVLSYNIYKEAGWDMEANKVRKL 394 (445)
Q Consensus 318 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~ 394 (445)
.|.++|+..++.- +.+...|...+......|+.+.|..+|++++...|+ ....|...+..-.+.|+.+.+..+.++
T Consensus 488 ~Ar~ife~~Lk~~-p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R 566 (679)
T 4e6h_A 488 TACKVLELGLKYF-ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKR 566 (679)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHC-CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8888888877653 556677777888777888888888888888887663 445666777777778888888888888
Q ss_pred HHhc
Q 047840 395 ISET 398 (445)
Q Consensus 395 m~~~ 398 (445)
+.+.
T Consensus 567 ~~~~ 570 (679)
T 4e6h_A 567 FFEK 570 (679)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8754
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.47 E-value=7.5e-12 Score=113.84 Aligned_cols=230 Identities=10% Similarity=0.007 Sum_probs=128.8
Q ss_pred HHHcCCChHHHHHHhccCCC-----C----ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCC-CC-----CHHHHHHHH
Q 047840 106 GYGKMGDFENARELFEKMPE-----R----NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGM-KP-----NESGLVSVL 170 (445)
Q Consensus 106 ~~~~~g~~~~A~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p-----~~~~~~~l~ 170 (445)
.+...|++++|...|++... + ...++..+...|...|++++|+..+++..+.-. .+ ...++..+.
T Consensus 112 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 191 (383)
T 3ulq_A 112 YELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFA 191 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 34444555555555444322 1 234566777777777777777777777654210 11 123555666
Q ss_pred HHHHccCChhHHHHHHHHHHHcCCC-CchhhhhHHHHHHHccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCChHHHH
Q 047840 171 TACAHLGAITQGLWVHSYAKRYHLE-KNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSL 249 (445)
Q Consensus 171 ~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 249 (445)
..|...|++++|...++++.+.... ++... ...++..+...|...|++++|+
T Consensus 192 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---------------------------~~~~~~~lg~~y~~~g~~~~A~ 244 (383)
T 3ulq_A 192 TNFLDLKQYEDAISHFQKAYSMAEAEKQPQL---------------------------MGRTLYNIGLCKNSQSQYEDAI 244 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH---------------------------HHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHcCChHH---------------------------HHHHHHHHHHHHHHCCCHHHHH
Confidence 6666667777776666665543100 00000 0123444555556666666666
Q ss_pred HHHHHHHHc----CC-CCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhC---CCCChhHHHHHHHHHHhcCC---hHH
Q 047840 250 ELFDRMVKS----GT-QPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG---VEPQLEHYACVVDLLARAGM---VEE 318 (445)
Q Consensus 250 ~~~~~m~~~----~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~---~~~ 318 (445)
..+++..+. +. +....++..+...+...|++++|...+++...... .+.....+..+...|...|+ +++
T Consensus 245 ~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 324 (383)
T 3ulq_A 245 PYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQG 324 (383)
T ss_dssp HHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHH
T ss_pred HHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 666655441 22 22344566666667777777777777766554311 11112234556666777777 677
Q ss_pred HHHHHHHHhcCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 047840 319 AEKFIEEKMGGLGGG-DANVWGALLSACRIYGKIEVGNRVWRKLAEMG 365 (445)
Q Consensus 319 A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 365 (445)
|..++++. +..| ....+..+...|...|++++|...++++.+..
T Consensus 325 al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 325 FFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 77777766 3233 33456677777888888888888888877643
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.45 E-value=1.2e-11 Score=99.61 Aligned_cols=169 Identities=13% Similarity=0.080 Sum_probs=145.4
Q ss_pred hhhhhHHHHHHHccCChHHHHHHhhcCCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 047840 198 VILATAVVDMYSKCGHVHSALSVFEGISNK---DAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTC 274 (445)
Q Consensus 198 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 274 (445)
...+..+...+...|++++|...|+++... +...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 345666778888899999999999887653 56678888999999999999999999998863 34677888888899
Q ss_pred hcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHH
Q 047840 275 THAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVG 354 (445)
Q Consensus 275 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 354 (445)
...|++++|...++.+... .+.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999874 24567788889999999999999999999988776 66788999999999999999999
Q ss_pred HHHHHHHHHhCCCCch
Q 047840 355 NRVWRKLAEMGITDFS 370 (445)
Q Consensus 355 ~~~~~~~~~~~~~~~~ 370 (445)
...++++.+..|++..
T Consensus 164 ~~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 164 LPHFKKANELDEGASV 179 (186)
T ss_dssp HHHHHHHHHHHHCCCG
T ss_pred HHHHHHHHHcCCCchh
Confidence 9999999998887654
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.44 E-value=6.8e-12 Score=105.18 Aligned_cols=191 Identities=10% Similarity=-0.024 Sum_probs=96.5
Q ss_pred chhhhhHHHHHHHccCChHHHHHHhhcCCC----CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047840 197 NVILATAVVDMYSKCGHVHSALSVFEGISN----KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLT 272 (445)
Q Consensus 197 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 272 (445)
++..+......+...|++++|...|++... ++...+..+..++...|++++|+..+++..+... .+...+..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY-NLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-SHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-chHHHHHHHHH
Confidence 344555555555556666666655554322 3444444455555555666666666555555321 13344555555
Q ss_pred HhhcCCcHHHHHHHHHHhHHhhCCCCCh-------hHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCC--CHHHHHHHHH
Q 047840 273 TCTHAKMVRDGLNLFENMSAVYGVEPQL-------EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGG--DANVWGALLS 343 (445)
Q Consensus 273 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~ 343 (445)
.+...|++++|...+++..+.. +.+. ..|..+...+...|++++|.+.|++.++.. +. +...|..+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHHH
Confidence 5555566666666655555431 1122 234444555555555566666555555433 22 2344555555
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 344 ACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 344 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
++... +...++++....+.++..+.. ......+.+++|...+++..+.
T Consensus 162 ~~~~~-----~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 162 LFYNN-----GADVLRKATPLASSNKEKYAS--EKAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHH-----HHHHHHHHGGGTTTCHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-----HHHHHHHHHhcccCCHHHHHH--HHHHHHHHHHHHHHHHHHHhhc
Confidence 54332 233344444444443322222 2233344458999999888764
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.4e-11 Score=103.30 Aligned_cols=207 Identities=5% Similarity=-0.019 Sum_probs=164.1
Q ss_pred CCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCC---CChhhHHHHHH
Q 047840 161 PNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN---KDAGAWNAMIS 237 (445)
Q Consensus 161 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~ 237 (445)
.|+..+......+...|++++|...|++..+...+++...+..+..++...|++++|...|++..+ .+..+|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 467888899999999999999999999999987447777888899999999999999999997754 35568889999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCC---hhHHHHHH
Q 047840 238 GVAMNGDAKKSLELFDRMVKSGTQPTE-------TTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ---LEHYACVV 307 (445)
Q Consensus 238 ~~~~~~~~~~a~~~~~~m~~~~~~p~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~ 307 (445)
.|...|++++|+..+++..+... .+. ..|..+...+...|++++|...|+++.+ ..|+ ...+..+.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHHH
Confidence 99999999999999999988632 234 4577777888899999999999999984 3565 56677777
Q ss_pred HHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 047840 308 DLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIY 379 (445)
Q Consensus 308 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 379 (445)
.+|... +..+++++...+ ..+...+.... ....+.+++|+..++++++..|+++.+...+..+.
T Consensus 161 ~~~~~~-----~~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 161 VLFYNN-----GADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHH-----HHHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 777654 344556665554 44555555444 33456789999999999999999887777665543
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.41 E-value=3.6e-10 Score=108.69 Aligned_cols=221 Identities=7% Similarity=0.021 Sum_probs=168.0
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHH-HHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcC
Q 047840 146 EVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGL-WVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGI 224 (445)
Q Consensus 146 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 224 (445)
.+..+|++.+.. .+-+...|...+..+...|+.+.|. .+|++..... |.+...+...+....+.|+++.|..+|+++
T Consensus 327 Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~ 404 (679)
T 4e6h_A 327 RMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSC 404 (679)
T ss_dssp HHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 345566666654 2336667777777778889999996 9999998753 566777888888899999999999999877
Q ss_pred CC-------------CC------------hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc-CC
Q 047840 225 SN-------------KD------------AGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTH-AK 278 (445)
Q Consensus 225 ~~-------------~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~~ 278 (445)
.. |+ ...|...+....+.|+.+.|..+|.+..+.-..+....|...+..-.+ .+
T Consensus 405 l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~ 484 (679)
T 4e6h_A 405 IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISK 484 (679)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTS
T ss_pred HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCC
Confidence 53 21 236888888888899999999999999876111223334333222223 35
Q ss_pred cHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCC--CHHHHHHHHHHHHHcCChHHHHH
Q 047840 279 MVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGG--DANVWGALLSACRIYGKIEVGNR 356 (445)
Q Consensus 279 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~ 356 (445)
+.+.|..+|+...+.+ +.+...+...++.....|+.+.|..+|++.+.....+ ....|...+..-...|+.+.+..
T Consensus 485 d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~ 562 (679)
T 4e6h_A 485 DTKTACKVLELGLKYF--ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRT 562 (679)
T ss_dssp CCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHH
T ss_pred CHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 6999999999999863 4456677788888888999999999999998765222 34688999998899999999999
Q ss_pred HHHHHHHhCCCCch
Q 047840 357 VWRKLAEMGITDFS 370 (445)
Q Consensus 357 ~~~~~~~~~~~~~~ 370 (445)
+.+++.+..|+++.
T Consensus 563 v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 563 LEKRFFEKFPEVNK 576 (679)
T ss_dssp HHHHHHHHSTTCCH
T ss_pred HHHHHHHhCCCCcH
Confidence 99999999998653
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.39 E-value=3.5e-11 Score=109.21 Aligned_cols=231 Identities=10% Similarity=0.035 Sum_probs=106.6
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHcC-CCCC----HHHHHHHHHHHHccCChhHHHHHHHHHHHcCCC-C-----chhhhh
Q 047840 134 IMAAYSRISDFKEVLSLFRQMQEVG-MKPN----ESGLVSVLTACAHLGAITQGLWVHSYAKRYHLE-K-----NVILAT 202 (445)
Q Consensus 134 l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-----~~~~~~ 202 (445)
....+...|++++|+..|++..... -.++ ..++..+...+...|+++.|...+++..+.... + ...+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 3445667777777777777765421 0112 345566666677777777777777666543100 0 122344
Q ss_pred HHHHHHHccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHhhcC
Q 047840 203 AVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKS----GTQP-TETTFVAVLTTCTHA 277 (445)
Q Consensus 203 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~ 277 (445)
.+..+|...|++++|...| ++..+. +..+ ...++..+...|...
T Consensus 187 ~lg~~y~~~~~~~~A~~~~-------------------------------~~al~~~~~~~~~~~~~~~~~~lg~~y~~~ 235 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHL-------------------------------EAALELAMDIQNDRFIAISLLNIANSYDRS 235 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHH-------------------------------HHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHH-------------------------------HHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 4444455555555554444 333221 0000 112344444445555
Q ss_pred CcHHHHHHHHHHhHHhh---CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcC----CCCCCHHHHHHHHHHHHHcCC
Q 047840 278 KMVRDGLNLFENMSAVY---GVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGG----LGGGDANVWGALLSACRIYGK 350 (445)
Q Consensus 278 ~~~~~a~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~ 350 (445)
|++++|...+++..... +.+....++..+..+|.+.|++++|...+++..+. +-+.....+..+...+...++
T Consensus 236 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~ 315 (378)
T 3q15_A 236 GDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVD 315 (378)
T ss_dssp TCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCC
T ss_pred CCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCc
Confidence 55555555554444310 11112334444555555555555555555554332 111112233333334444444
Q ss_pred ---hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHH
Q 047840 351 ---IEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLIS 396 (445)
Q Consensus 351 ---~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 396 (445)
+.+|+..+++.. ..|.....+..++..|...|++++|.+.+++..
T Consensus 316 ~~~~~~al~~~~~~~-~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 316 ERKIHDLLSYFEKKN-LHAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 444444444311 111122344455555666666666655555543
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.38 E-value=8.5e-12 Score=113.27 Aligned_cols=189 Identities=8% Similarity=-0.097 Sum_probs=137.2
Q ss_pred HHHHHccCChHHHHHHhhcCCC-----C----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHc----CC-CC-CHHHHHH
Q 047840 205 VDMYSKCGHVHSALSVFEGISN-----K----DAGAWNAMISGVAMNGDAKKSLELFDRMVKS----GT-QP-TETTFVA 269 (445)
Q Consensus 205 ~~~~~~~g~~~~a~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~-~p-~~~~~~~ 269 (445)
...+...|++++|...|++... + ...++..+...|...|+++.|+..+++..+. +. .+ ...+++.
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 3344555666666655554332 1 1335677778888888888888888877653 11 11 2457788
Q ss_pred HHHHhhcCCcHHHHHHHHHHhHHhhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHHHhc-----CCCCCCHHHHHH
Q 047840 270 VLTTCTHAKMVRDGLNLFENMSAVYGVEPQ----LEHYACVVDLLARAGMVEEAEKFIEEKMG-----GLGGGDANVWGA 340 (445)
Q Consensus 270 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~ 340 (445)
+...|...|++++|...+++......-.++ ..++..+..+|...|++++|...+++..+ .. +....++..
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~ 266 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFG 266 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHH
Confidence 888999999999999999888763221122 45678889999999999999999999876 44 344778999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCC-----CchhHHHHHHHHHHcCC---hHHHHHHHHH
Q 047840 341 LLSACRIYGKIEVGNRVWRKLAEMGIT-----DFSTHVLSYNIYKEAGW---DMEANKVRKL 394 (445)
Q Consensus 341 l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~---~~~A~~~~~~ 394 (445)
+...+...|++++|...++++.+..+. ....+..+...|...|+ +.+|...+++
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~ 328 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK 328 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 999999999999999999999996432 23345567777888888 7777776665
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.32 E-value=2e-09 Score=97.29 Aligned_cols=252 Identities=10% Similarity=0.004 Sum_probs=137.5
Q ss_pred HhhhcCCchhHHHHHHHHHHHhcCCCChh----hHHHHHHHHHhcCCHHHHHHHhccCCC-----CC----hhhHHHHHH
Q 047840 39 ACVILGPLENFGMFVHAHVVKFGFGEDPF----VVSSLLEFYSLVHKMGTARALFDKSPD-----RD----VVTWTTMVD 105 (445)
Q Consensus 39 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~l~~ 105 (445)
.+...|+++ .+...++.........+.. .++.+...+...|++++|...+++... .+ ..++..+..
T Consensus 23 ~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 23 VAINDGNPD-EAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHTTCHH-HHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHH-HHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 334455555 5555555544432111111 234444455555555555555554322 11 112344555
Q ss_pred HHHcCCChHHHHHHhccCCC-------C----ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC--C--CHHHHHHHH
Q 047840 106 GYGKMGDFENARELFEKMPE-------R----NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMK--P--NESGLVSVL 170 (445)
Q Consensus 106 ~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--p--~~~~~~~l~ 170 (445)
.+...|++++|...+++... + ....+..+...+...|++++|...+++....... + ...++..+.
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 56666666666666655431 1 1234666778888999999999999887653221 1 234667778
Q ss_pred HHHHccCChhHHHHHHHHHHHcCCCCch-hhhh-----HHHHHHHccCChHHHHHHhhcCCCCCh-------hhHHHHHH
Q 047840 171 TACAHLGAITQGLWVHSYAKRYHLEKNV-ILAT-----AVVDMYSKCGHVHSALSVFEGISNKDA-------GAWNAMIS 237 (445)
Q Consensus 171 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~g~~~~a~~~~~~~~~~~~-------~~~~~l~~ 237 (445)
..+...|++++|...+++.......++. ..+. ..+..+...|++++|...+++....+. ..+..+..
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~ 261 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 261 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHH
Confidence 8888899999999999888764212211 1111 223346677888888887776654321 12345555
Q ss_pred HHHhcCChHHHHHHHHHHHHc----CCCCCH-HHHHHHHHHhhcCCcHHHHHHHHHHhH
Q 047840 238 GVAMNGDAKKSLELFDRMVKS----GTQPTE-TTFVAVLTTCTHAKMVRDGLNLFENMS 291 (445)
Q Consensus 238 ~~~~~~~~~~a~~~~~~m~~~----~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (445)
.+...|++++|...+++.... |..++. ..+..+..++...|+.++|...+++..
T Consensus 262 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 262 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 666666666666666655432 111111 133333444445555555555555544
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.31 E-value=4.1e-11 Score=103.67 Aligned_cols=224 Identities=11% Similarity=0.043 Sum_probs=151.0
Q ss_pred HccCChhHHHHHHHHHHHc-------CCCCchhhhhHHHHHHHccCChHHHHHHhhcCCC--------C---ChhhHHHH
Q 047840 174 AHLGAITQGLWVHSYAKRY-------HLEKNVILATAVVDMYSKCGHVHSALSVFEGISN--------K---DAGAWNAM 235 (445)
Q Consensus 174 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------~---~~~~~~~l 235 (445)
...|++++|..++++..+. ..+....++..+..+|...|++++|...|++... . ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4677888888888777652 2233466788888899999999999988876542 1 24477888
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc------CC-CCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhh-----C-CCCChhH
Q 047840 236 ISGVAMNGDAKKSLELFDRMVKS------GT-QPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVY-----G-VEPQLEH 302 (445)
Q Consensus 236 ~~~~~~~~~~~~a~~~~~~m~~~------~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~-~~~~~~~ 302 (445)
...|...|++++|+..+++.... .. +....++..+...+...|++++|...++++.... + .+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 88899999999999999887664 11 2235567778888889999999999998887531 0 1123556
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhcC-------CCC-CCHHHHHHHHHHHHHcCChHH------HHHHHHHHHHhCCCC
Q 047840 303 YACVVDLLARAGMVEEAEKFIEEKMGG-------LGG-GDANVWGALLSACRIYGKIEV------GNRVWRKLAEMGITD 368 (445)
Q Consensus 303 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~-~~~~~~~~l~~~~~~~g~~~~------a~~~~~~~~~~~~~~ 368 (445)
+..+..+|...|++++|...+++..+. ... .....|..+.......+.... +...++......|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 778888888999999999999887643 111 222334444433333333222 222222222223345
Q ss_pred chhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 047840 369 FSTHVLSYNIYKEAGWDMEANKVRKLISE 397 (445)
Q Consensus 369 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 397 (445)
+.++..++.+|...|++++|..++++..+
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56788999999999999999999998765
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=4.8e-11 Score=116.04 Aligned_cols=164 Identities=11% Similarity=0.137 Sum_probs=125.4
Q ss_pred chhhhhHHHHHHHccCChHHHHHHhhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 047840 197 NVILATAVVDMYSKCGHVHSALSVFEGISN---KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTT 273 (445)
Q Consensus 197 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 273 (445)
+...++.|..+|.+.|++++|+..|++..+ .+..+|..+..+|.+.|++++|+..|++..+... -+...|..+..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P-~~~~a~~nLg~~ 86 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 345555666666666666666666655432 3456677777788888888888888888877532 256778888888
Q ss_pred hhcCCcHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChH
Q 047840 274 CTHAKMVRDGLNLFENMSAVYGVEP-QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIE 352 (445)
Q Consensus 274 ~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 352 (445)
+...|++++|.+.|++..+. .| +...|..+..+|...|++++|++.|++.++.. +.+...+..+..++...|+++
T Consensus 87 l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQI---NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHH
Confidence 88889999999988888864 44 46788888889999999999999999888766 567888999999999999999
Q ss_pred HHHHHHHHHHHhC
Q 047840 353 VGNRVWRKLAEMG 365 (445)
Q Consensus 353 ~a~~~~~~~~~~~ 365 (445)
+|.+.++++++..
T Consensus 163 ~A~~~~~kal~l~ 175 (723)
T 4gyw_A 163 DYDERMKKLVSIV 175 (723)
T ss_dssp THHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC
Confidence 9999998888744
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.29 E-value=3.4e-10 Score=96.79 Aligned_cols=183 Identities=8% Similarity=0.060 Sum_probs=123.5
Q ss_pred HHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCCC-----ChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 047840 182 GLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK-----DAGAWNAMISGVAMNGDAKKSLELFDRMV 256 (445)
Q Consensus 182 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 256 (445)
+...+++....+ +++......+..++...|++++|++++.+.... +...+...+..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 444455444433 233333445556666666666666666655322 34466677888889999999999999997
Q ss_pred HcCCCC-----CHHHHHHHHHH--hhc--CCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHh
Q 047840 257 KSGTQP-----TETTFVAVLTT--CTH--AKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKM 327 (445)
Q Consensus 257 ~~~~~p-----~~~~~~~l~~~--~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 327 (445)
+. .| +..+...+..+ ... .++..+|..+|+++... .|+..+-..++.++.+.|++++|.+.++.+.
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 75 55 35666666655 222 34899999999998754 4553333445558889999999999998766
Q ss_pred cCC---------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhH
Q 047840 328 GGL---------GGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTH 372 (445)
Q Consensus 328 ~~~---------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 372 (445)
+.. -+.|+.++..++......|+ +|.++++++.+..|+++.+.
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 531 14567777666666666776 88999999999999987544
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.28 E-value=8e-11 Score=102.59 Aligned_cols=165 Identities=8% Similarity=-0.002 Sum_probs=101.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHhhcC-CcHHHHHHHHHHhHHhhCCCCC----h
Q 047840 231 AWNAMISGVAMNGDAKKSLELFDRMVKS----GTQP-TETTFVAVLTTCTHA-KMVRDGLNLFENMSAVYGVEPQ----L 300 (445)
Q Consensus 231 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~----~ 300 (445)
+|+.+..+|...|++++|+..+++.... |-.+ -..++..+...|... |++++|...|++......-..+ .
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~ 158 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 4555566666666666666666655432 1100 134566677777775 8888888888877754211111 3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCH------HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchh---
Q 047840 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDA------NVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFST--- 371 (445)
Q Consensus 301 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--- 371 (445)
.++..+...+.+.|++++|...|++..+....... ..|..+..++...|++++|...+++.++..|.....
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 238 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRES 238 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------H
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHH
Confidence 45677788888888888888888887765422211 256777778888888888888888888877764332
Q ss_pred --HHHHHHHHH--HcCChHHHHHHHHHH
Q 047840 372 --HVLSYNIYK--EAGWDMEANKVRKLI 395 (445)
Q Consensus 372 --~~~l~~~~~--~~g~~~~A~~~~~~m 395 (445)
+..++.++. ..+++++|...++.+
T Consensus 239 ~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 239 NFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 334555554 346677777777544
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.28 E-value=3.5e-10 Score=96.81 Aligned_cols=180 Identities=9% Similarity=-0.012 Sum_probs=101.4
Q ss_pred hhhhhHHHHHHHccCChHHHHHHhhcCCC--C-C---hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC-HHHHHH
Q 047840 198 VILATAVVDMYSKCGHVHSALSVFEGISN--K-D---AGAWNAMISGVAMNGDAKKSLELFDRMVKSGT-QPT-ETTFVA 269 (445)
Q Consensus 198 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~-~~~~~~ 269 (445)
...+..+...+.+.|++++|...|+++.. | + ..++..+..+|.+.|++++|+..|++..+... .|. ...+..
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 34444445555555555555555554433 1 2 23444455555555555555555555554321 111 223334
Q ss_pred HHHHhhc--------CCcHHHHHHHHHHhHHhhCCCCCh-hHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHH
Q 047840 270 VLTTCTH--------AKMVRDGLNLFENMSAVYGVEPQL-EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGA 340 (445)
Q Consensus 270 l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 340 (445)
+..++.. .|++++|...|+++... .|+. .....+..... ....+ ...+..
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~~~~-------~~~~~-----------~~~~~~ 153 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDATQKIRE-------LRAKL-----------ARKQYE 153 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHHHHHHH-------HHHHH-----------HHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHHHHHHH-------HHHHH-----------HHHHHH
Confidence 4444444 55555555555555543 2221 11111100000 00000 011366
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCC---chhHHHHHHHHHHc----------CChHHHHHHHHHHHhc
Q 047840 341 LLSACRIYGKIEVGNRVWRKLAEMGITD---FSTHVLSYNIYKEA----------GWDMEANKVRKLISET 398 (445)
Q Consensus 341 l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~ 398 (445)
+...|...|++++|+..|+++++..|++ +.++..++.+|... |++++|...++++.+.
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 7888999999999999999999998874 45788889999877 8999999999998764
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.28 E-value=1.7e-09 Score=92.55 Aligned_cols=241 Identities=11% Similarity=0.059 Sum_probs=166.0
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCCh
Q 047840 135 MAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHV 214 (445)
Q Consensus 135 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 214 (445)
++-..-.|++..++.-...+. .........-+.+++...|++... ....|....+..+.. |...+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~---~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~-~~~~~-- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFS---KVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQ-FLDTK-- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSS---CCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHH-HHTTT--
T ss_pred HHHHHHhhHHHHHHHHHHhcC---ccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHH-Hhccc--
Confidence 344556778877777333221 111223333445667666666531 112233333333333 33333
Q ss_pred HHHHHHhhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHhhcCCcHHHHHHHHHHh
Q 047840 215 HSALSVFEGISN---KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQ-PTETTFVAVLTTCTHAKMVRDGLNLFENM 290 (445)
Q Consensus 215 ~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 290 (445)
|...|++... ++..++..+..++...|++++|++++.+....|.. -+...+...+..+.+.|+.+.|.+.++.|
T Consensus 85 --a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 --NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp --CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 5666765543 45556678888999999999999999998776542 25667778888999999999999999999
Q ss_pred HHhhCCCC-----ChhHHHHHHHHHH--hcC--ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 047840 291 SAVYGVEP-----QLEHYACVVDLLA--RAG--MVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKL 361 (445)
Q Consensus 291 ~~~~~~~~-----~~~~~~~l~~~~~--~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 361 (445)
.+. .| +..+...|+.++. ..| ++.+|..+|+++.+.. |+..+-..++.++...|++++|.+.++.+
T Consensus 163 ~~~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 163 TNA---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HHH---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred Hhc---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 865 66 3556666666633 334 8999999999997654 55334444445889999999999999988
Q ss_pred HHh----------CCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 047840 362 AEM----------GITDFSTHVLSYNIYKEAGWDMEANKVRKLISETG 399 (445)
Q Consensus 362 ~~~----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 399 (445)
.+. +|.++.++..++.+....|+ +|.++++++.+..
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 775 58889899888888888898 8999999998753
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.28 E-value=9e-10 Score=91.91 Aligned_cols=62 Identities=15% Similarity=0.057 Sum_probs=54.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHcCChHHHHHHHHHHHhcCCc
Q 047840 340 ALLSACRIYGKIEVGNRVWRKLAEMGITDF---STHVLSYNIYKEAGWDMEANKVRKLISETGMK 401 (445)
Q Consensus 340 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 401 (445)
.+...+...|++++|+..|+++++..|+++ .++..++.+|.+.|++++|.+.++.+...+.+
T Consensus 152 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 152 SVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 456778899999999999999999999865 56888999999999999999999998876543
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.27 E-value=2.2e-10 Score=86.78 Aligned_cols=129 Identities=13% Similarity=0.088 Sum_probs=82.3
Q ss_pred HHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 047840 267 FVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACR 346 (445)
Q Consensus 267 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 346 (445)
+..+...+...|++++|..+++.+... . +.+...+..+...+...|++++|...++++.... +.+...+..+...+.
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALEL-D-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHc-C-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 344455555566666666666666543 1 2344555566666666667777777666665544 445566666677777
Q ss_pred HcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 347 IYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 347 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
..|++++|.+.++++.+..|.++..+..++.++.+.|++++|...++++.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 7777777777777777777766666777777777777777777777666543
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.24 E-value=6.2e-11 Score=102.51 Aligned_cols=226 Identities=12% Similarity=0.030 Sum_probs=158.8
Q ss_pred HHhcCCHhHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHc------CC-CCchhhhhH
Q 047840 138 YSRISDFKEVLSLFRQMQEV-------GMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRY------HL-EKNVILATA 203 (445)
Q Consensus 138 ~~~~~~~~~a~~~~~~~~~~-------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~ 203 (445)
....|++++|+..|++..+. +.+....++..+...+...|++++|...++++.+. +. +....++..
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 34567888888888776552 21224667888999999999999999999998865 22 334668889
Q ss_pred HHHHHHccCChHHHHHHhhcCCC-------C----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCC-CHH
Q 047840 204 VVDMYSKCGHVHSALSVFEGISN-------K----DAGAWNAMISGVAMNGDAKKSLELFDRMVKS------GTQP-TET 265 (445)
Q Consensus 204 l~~~~~~~g~~~~a~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~~~p-~~~ 265 (445)
+..+|...|++++|...|.+... + ...++..+...|...|++++|+..+++..+. +..| ...
T Consensus 91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK 170 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 99999999999999999987643 1 2457888899999999999999999998765 1133 346
Q ss_pred HHHHHHHHhhcCCcHHHHHHHHHHhHHhh------CCCCC-hhHHHHHHHHHHhcCC------hHHHHHHHHHHhcCCCC
Q 047840 266 TFVAVLTTCTHAKMVRDGLNLFENMSAVY------GVEPQ-LEHYACVVDLLARAGM------VEEAEKFIEEKMGGLGG 332 (445)
Q Consensus 266 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~-~~~~~~l~~~~~~~g~------~~~A~~~~~~~~~~~~~ 332 (445)
++..+...+...|++++|...++++.... ...+. ...+..+...+...+. +.++...++...... +
T Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 249 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDS-P 249 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCC-H
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCC-H
Confidence 78888899999999999999999988641 11222 2333333333433332 333333333332111 2
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 047840 333 GDANVWGALLSACRIYGKIEVGNRVWRKLAEM 364 (445)
Q Consensus 333 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 364 (445)
....++..+...|...|++++|...++++++.
T Consensus 250 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 250 TVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34567888999999999999999999998764
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.24 E-value=2.3e-10 Score=99.68 Aligned_cols=206 Identities=9% Similarity=0.020 Sum_probs=124.7
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHH
Q 047840 135 MAAYSRISDFKEVLSLFRQMQEV----GMKPN-ESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYS 209 (445)
Q Consensus 135 ~~~~~~~~~~~~a~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 209 (445)
...|...|++++|.+.|.+.... |-+++ ..+|..+..+|...|++++|...+++..+.. .
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~---------------~ 108 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIF---------------T 108 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------------H
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH---------------H
Confidence 55666677777777776665432 21111 3455666666666666666666666555421 1
Q ss_pred ccCChHHHHHHhhcCCCCChhhHHHHHHHHHhc-CChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHhhcCCcHHHH
Q 047840 210 KCGHVHSALSVFEGISNKDAGAWNAMISGVAMN-GDAKKSLELFDRMVKSGTQ-PT----ETTFVAVLTTCTHAKMVRDG 283 (445)
Q Consensus 210 ~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~~~~-p~----~~~~~~l~~~~~~~~~~~~a 283 (445)
..|+...+ ..+++.+...|... |++++|+..|++..+.... .+ ..++..+...+...|++++|
T Consensus 109 ~~g~~~~~-----------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 177 (292)
T 1qqe_A 109 HRGQFRRG-----------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEA 177 (292)
T ss_dssp HTTCHHHH-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HcCCHHHH-----------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 12222221 22456677777775 8888888888877653110 01 34577778888888899999
Q ss_pred HHHHHHhHHhhCCCCCh-----hHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCH------HHHHHHHHHHH--HcCC
Q 047840 284 LNLFENMSAVYGVEPQL-----EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDA------NVWGALLSACR--IYGK 350 (445)
Q Consensus 284 ~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~l~~~~~--~~g~ 350 (445)
...|++......-.+.. ..+..+..++...|++++|...|++.++.. |+. ..+..++.++. ..++
T Consensus 178 ~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~l~~l~~~~~~~~~~~ 255 (292)
T 1qqe_A 178 SDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED--PNFADSRESNFLKSLIDAVNEGDSEQ 255 (292)
T ss_dssp HHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTT
T ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCCCcHHHHHHHHHHHHHHcCCHHH
Confidence 98888888641111111 145667777888899999999998887543 221 13444555554 3466
Q ss_pred hHHHHHHHHHHHHhCCCC
Q 047840 351 IEVGNRVWRKLAEMGITD 368 (445)
Q Consensus 351 ~~~a~~~~~~~~~~~~~~ 368 (445)
+++|+..|+++...+|..
T Consensus 256 ~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 256 LSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp HHHHHHHHTTSSCCCHHH
T ss_pred HHHHHHHhccCCccHHHH
Confidence 788888887777666644
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=5.6e-10 Score=96.87 Aligned_cols=179 Identities=8% Similarity=-0.013 Sum_probs=148.5
Q ss_pred ChHHHHHHhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHH
Q 047840 213 HVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSA 292 (445)
Q Consensus 213 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (445)
..+.....+......+...+..+...+...|++++|+..|++...... -+...+..+...+...|++++|...++.+..
T Consensus 101 ~~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~ 179 (287)
T 3qou_A 101 PEEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPL 179 (287)
T ss_dssp CHHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG
T ss_pred CHHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCch
Confidence 345555666666655667788888899999999999999999988643 3677888889999999999999999999985
Q ss_pred hhCCCCChhHHHHH-HHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--c
Q 047840 293 VYGVEPQLEHYACV-VDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITD--F 369 (445)
Q Consensus 293 ~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~ 369 (445)
. .|+....... ...+...++.++|...+++..... +.+...+..+...+...|++++|+..|+++++.+|.+ .
T Consensus 180 ~---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~ 255 (287)
T 3qou_A 180 Q---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADG 255 (287)
T ss_dssp G---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGG
T ss_pred h---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccc
Confidence 4 5554433332 334667788899999999988877 7788999999999999999999999999999999986 8
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHH
Q 047840 370 STHVLSYNIYKEAGWDMEANKVRKLIS 396 (445)
Q Consensus 370 ~~~~~l~~~~~~~g~~~~A~~~~~~m~ 396 (445)
..+..++.++...|+.++|...+++..
T Consensus 256 ~a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 256 QTRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 889999999999999999999887654
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=3.1e-11 Score=93.68 Aligned_cols=143 Identities=8% Similarity=-0.098 Sum_probs=106.7
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCC
Q 047840 237 SGVAMNGDAKKSLELFDRMVKSGTQP-TETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGM 315 (445)
Q Consensus 237 ~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 315 (445)
..+...|++++|+..+.+.... .| +...+..+...|.+.|++++|...|++..+. -+-+...|..+..+|...|+
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCc
Confidence 3445567777887777776543 22 2344556777788888888888888888764 13357778888888888889
Q ss_pred hHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHH-HHHHHHhCCCCchhHHHHHHHHHHcCC
Q 047840 316 VEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRV-WRKLAEMGITDFSTHVLSYNIYKEAGW 384 (445)
Q Consensus 316 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~ 384 (445)
+++|...|++.++.. +.+..+|..+...|.+.|++++|.+. ++++++..|.++.++......+...|+
T Consensus 81 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 999988888888766 56778888888888888888766554 588888999888888888888877775
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.23 E-value=3e-10 Score=97.26 Aligned_cols=205 Identities=12% Similarity=0.047 Sum_probs=149.0
Q ss_pred CCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCc---hhhhhHHHHHHHccCChHHHHHHhhcCCC--C-C---hhh
Q 047840 161 PNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKN---VILATAVVDMYSKCGHVHSALSVFEGISN--K-D---AGA 231 (445)
Q Consensus 161 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~---~~~ 231 (445)
.+...+..+...+.+.|++++|...|+++.+.. +.+ ...+..+..+|.+.|++++|...|++..+ | + ..+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 366778888899999999999999999999874 333 56788899999999999999999998754 2 2 346
Q ss_pred HHHHHHHHHh--------cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHH
Q 047840 232 WNAMISGVAM--------NGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHY 303 (445)
Q Consensus 232 ~~~l~~~~~~--------~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 303 (445)
+..+..++.. .|++++|+..|+++.+.. |+... ...+...+..+... -...+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~-------------~~~a~~~~~~~~~~-----~~~~~ 151 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHEL-------------VDDATQKIRELRAK-----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTT-------------HHHHHHHHHHHHHH-----HHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchh-------------HHHHHHHHHHHHHH-----HHHHH
Confidence 7778888888 999999999999998863 33211 11111112222211 11235
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhcCCCC-C-CHHHHHHHHHHHHHc----------CChHHHHHHHHHHHHhCCCCchh
Q 047840 304 ACVVDLLARAGMVEEAEKFIEEKMGGLGG-G-DANVWGALLSACRIY----------GKIEVGNRVWRKLAEMGITDFST 371 (445)
Q Consensus 304 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~ 371 (445)
..+...|...|++++|...|+++++.... + ....+..+..+|... |++++|...++++++..|+++.+
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 231 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL 231 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence 56778899999999999999998765411 1 356788888888866 88999999999999999987643
Q ss_pred ---HHHHHHHHHHcCChH
Q 047840 372 ---HVLSYNIYKEAGWDM 386 (445)
Q Consensus 372 ---~~~l~~~~~~~g~~~ 386 (445)
...+..++.+.|+++
T Consensus 232 ~~a~~~l~~~~~~~~~~~ 249 (261)
T 3qky_A 232 RTAEELYTRARQRLTELE 249 (261)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 334444444444443
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.22 E-value=6.6e-10 Score=84.04 Aligned_cols=133 Identities=12% Similarity=0.191 Sum_probs=112.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHH
Q 047840 231 AWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLL 310 (445)
Q Consensus 231 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 310 (445)
+|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|..+++++... .+.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 56777888889999999999999988764 336777888888888999999999999998864 244567788888999
Q ss_pred HhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 047840 311 ARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT 367 (445)
Q Consensus 311 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 367 (445)
...|++++|...++++.+.. +.+..++..++..+...|++++|...++++.+..|.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 99999999999999988765 567888899999999999999999999999988875
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.20 E-value=8.6e-11 Score=114.73 Aligned_cols=170 Identities=11% Similarity=-0.018 Sum_probs=137.4
Q ss_pred HccCChHHHHHHhhcCC-----------CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcC
Q 047840 209 SKCGHVHSALSVFEGIS-----------NKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHA 277 (445)
Q Consensus 209 ~~~g~~~~a~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 277 (445)
...|++++|.+.+++.. ..+...+..+...+...|++++|+..|++..+.+. -+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHHc
Confidence 67788999988888765 23566788888888899999999999998887632 3667788888888889
Q ss_pred CcHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 047840 278 KMVRDGLNLFENMSAVYGVEP-QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNR 356 (445)
Q Consensus 278 ~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 356 (445)
|++++|...|+++.+. .| +...+..+..+|.+.|++++ .+.|++.++.+ +.+...|..+..++...|++++|++
T Consensus 481 g~~~~A~~~~~~al~l---~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT---FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp TCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999988864 34 46777888888899999999 99998888766 6677888889999999999999999
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHcCC
Q 047840 357 VWRKLAEMGITDFSTHVLSYNIYKEAGW 384 (445)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 384 (445)
.|+++++.+|.+..++..++.++...|+
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 9999999999888888888888766554
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.16 E-value=6.6e-10 Score=88.79 Aligned_cols=160 Identities=10% Similarity=0.046 Sum_probs=106.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHH-H
Q 047840 232 WNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDL-L 310 (445)
Q Consensus 232 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~ 310 (445)
+......+...|++++|+..|++..+.. +.+...+..+...+...|++++|...++.+... .|+...+..+... +
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLEL 84 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHH
Confidence 4445556666777777777776655432 224556666666677777777777777776643 2333322222111 1
Q ss_pred HhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--chhHHHHHHHHHHcCChHHH
Q 047840 311 ARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITD--FSTHVLSYNIYKEAGWDMEA 388 (445)
Q Consensus 311 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A 388 (445)
...+...+|...+++.++.. +.+...+..+..++...|++++|...|+++++..|.. +..+..++.++...|+.++|
T Consensus 85 ~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 12223345677777777655 5567888888888888889999998888888888763 55788888888888888888
Q ss_pred HHHHHHHH
Q 047840 389 NKVRKLIS 396 (445)
Q Consensus 389 ~~~~~~m~ 396 (445)
...+++..
T Consensus 164 ~~~y~~al 171 (176)
T 2r5s_A 164 ASKYRRQL 171 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887654
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.14 E-value=9.4e-09 Score=84.72 Aligned_cols=163 Identities=9% Similarity=-0.005 Sum_probs=120.1
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCC----cHHHHHHHHHHhHHhhCCCCChhHH
Q 047840 228 DAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAK----MVRDGLNLFENMSAVYGVEPQLEHY 303 (445)
Q Consensus 228 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~ 303 (445)
++.++..+...|...+++++|+..|++..+.| +...+..+...|.. + ++++|..+|++..+. -+...+
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~~a~ 88 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSKSGE 88 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCHHHH
Confidence 55566666677777778888888888777754 45566666666766 5 788888888888653 355666
Q ss_pred HHHHHHHHh----cCChHHHHHHHHHHhcCCCCC--CHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCCchhHH
Q 047840 304 ACVVDLLAR----AGMVEEAEKFIEEKMGGLGGG--DANVWGALLSACRI----YGKIEVGNRVWRKLAEMGITDFSTHV 373 (445)
Q Consensus 304 ~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~ 373 (445)
..|...|.. .+++++|..+|++..+.+ ++ ++..+..|...|.. .++.++|...|+++.+. +.++.++.
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~-~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~ 166 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDS-ESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEY 166 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSST-TSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHH
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcC-CCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHH
Confidence 777777766 778888888888887666 21 26777788888877 77888888888888887 55566788
Q ss_pred HHHHHHHHc-C-----ChHHHHHHHHHHHhcCC
Q 047840 374 LSYNIYKEA-G-----WDMEANKVRKLISETGM 400 (445)
Q Consensus 374 ~l~~~~~~~-g-----~~~~A~~~~~~m~~~~~ 400 (445)
.|+.+|... | ++++|...+++..+.|.
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 888888764 3 78888888888877664
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.4e-09 Score=104.18 Aligned_cols=162 Identities=13% Similarity=0.042 Sum_probs=128.4
Q ss_pred cCChHHHHHHhhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHH
Q 047840 211 CGHVHSALSVFEGISN---KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLF 287 (445)
Q Consensus 211 ~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 287 (445)
.|++++|...|++..+ .+...+..+...+...|++++|++.+++..+.. +.+...+..+...+...|++++|...+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4788999999998765 356789999999999999999999999998863 236778888999999999999999999
Q ss_pred HHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHc---CChHHHHHHHHHHHHh
Q 047840 288 ENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIY---GKIEVGNRVWRKLAEM 364 (445)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~ 364 (445)
++..+. .+.+...+..+..+|...|++++|.+.+++..+.. +.+...+..+..++... |+.++|.+.++++++.
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 999875 23457788899999999999999999999998776 56788999999999999 9999999999999999
Q ss_pred CCCCchhHHHHH
Q 047840 365 GITDFSTHVLSY 376 (445)
Q Consensus 365 ~~~~~~~~~~l~ 376 (445)
+|.+...+..++
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 999887777666
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=2.6e-10 Score=88.36 Aligned_cols=124 Identities=10% Similarity=-0.022 Sum_probs=105.2
Q ss_pred HHHHhhcCCcHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHc
Q 047840 270 VLTTCTHAKMVRDGLNLFENMSAVYGVEPQ-LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIY 348 (445)
Q Consensus 270 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 348 (445)
|...+...|++++|+..+..... ..|+ ...+-.+...|.+.|++++|++.|++.++.. +.+..+|..+..++...
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 78 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELE 78 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 44566778899999999988874 2343 4556678899999999999999999998877 67899999999999999
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHH-HHHHHh
Q 047840 349 GKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKV-RKLISE 397 (445)
Q Consensus 349 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~ 397 (445)
|++++|+..|+++++.+|.++.++..++.+|.+.|++++|.+. +++..+
T Consensus 79 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 79 ENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999887765 576655
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.10 E-value=9.7e-08 Score=89.09 Aligned_cols=338 Identities=8% Similarity=-0.067 Sum_probs=177.6
Q ss_pred CCchHHHHHHHHHHhcCCCCCcccHHHHHHHhhhcCCchhHHHHHHHHHHHh-cCC-CChhhHHHHHHHHH----hcCCH
Q 047840 9 NFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF-GFG-EDPFVVSSLLEFYS----LVHKM 82 (445)
Q Consensus 9 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~~l~~~~~----~~g~~ 82 (445)
|+++.+..+|++... ..|+...|...+....+.++..+....+|+.++.. |.. .+..+|...+..+. ..+++
T Consensus 28 ~~~e~~~~iferal~--~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLK--KSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHST--TCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 678888888888877 34788888888887777664322677788877764 433 35677777776654 24678
Q ss_pred HHHHHHhccCCC-CCh---hhHHHHHHHHH-------------cCCChHHHHHHhccCCC----CChhhHHHHHHHHHhc
Q 047840 83 GTARALFDKSPD-RDV---VTWTTMVDGYG-------------KMGDFENARELFEKMPE----RNAVSWSAIMAAYSRI 141 (445)
Q Consensus 83 ~~a~~~~~~~~~-~~~---~~~~~l~~~~~-------------~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~ 141 (445)
+.+..+|++... |.. ..|......-. ..+.+..|..+++.+.. .+...|...+..-...
T Consensus 106 ~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~ 185 (493)
T 2uy1_A 106 EKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMEN 185 (493)
T ss_dssp HHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcC
Confidence 888888887654 211 11221111000 00112222322222211 1333454444432221
Q ss_pred C--C-----HhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCCh
Q 047840 142 S--D-----FKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHV 214 (445)
Q Consensus 142 ~--~-----~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 214 (445)
+ - .+.+..+|++++... +.++..|...+..+...|+++.|..++++.... |.+...+...... .+.++.
T Consensus 186 ~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~y~~~-~e~~~~ 261 (493)
T 2uy1_A 186 GMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLYYGLV-MDEEAV 261 (493)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHH-TTCTHH
T ss_pred CccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHHHHhh-cchhHH
Confidence 1 0 345667888877653 445677777777778888888888888888877 4444333322111 011110
Q ss_pred HHHHHHhhcCC--C-------C---ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-hhcCCcHH
Q 047840 215 HSALSVFEGIS--N-------K---DAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTT-CTHAKMVR 281 (445)
Q Consensus 215 ~~a~~~~~~~~--~-------~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~~~~~ 281 (445)
...+.+... . + ....|...+....+.++.+.|..+|.+. .. ..++...|...... +...++.+
T Consensus 262 --~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~ 337 (493)
T 2uy1_A 262 --YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRA 337 (493)
T ss_dssp --HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSH
T ss_pred --HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChH
Confidence 111111110 0 0 1123444555555556666666666666 21 11233333221111 11122466
Q ss_pred HHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 047840 282 DGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKL 361 (445)
Q Consensus 282 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 361 (445)
.|..+|+...+.+ +.++..+...++.....|+.+.|..+|+++ ......|...+..-...|+.+.+..+++++
T Consensus 338 ~ar~ife~al~~~--~~~~~~~~~yid~e~~~~~~~~aR~l~er~-----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~ 410 (493)
T 2uy1_A 338 TPYNIFSSGLLKH--PDSTLLKEEFFLFLLRIGDEENARALFKRL-----EKTSRMWDSMIEYEFMVGSMELFRELVDQK 410 (493)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHS-----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6666666666542 122334444555555666666666666665 224556666666556666666666666666
Q ss_pred HH
Q 047840 362 AE 363 (445)
Q Consensus 362 ~~ 363 (445)
.+
T Consensus 411 ~~ 412 (493)
T 2uy1_A 411 MD 412 (493)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.10 E-value=1.6e-09 Score=83.54 Aligned_cols=103 Identities=12% Similarity=0.066 Sum_probs=91.9
Q ss_pred CCCC-hhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHH
Q 047840 296 VEPQ-LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVL 374 (445)
Q Consensus 296 ~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 374 (445)
+.|+ ...+..+...+.+.|++++|...|++++... |.++..|..+..++...|++++|+..|+++++.+|+++.++..
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 3443 5567778888999999999999999998877 6788999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcC
Q 047840 375 SYNIYKEAGWDMEANKVRKLISETG 399 (445)
Q Consensus 375 l~~~~~~~g~~~~A~~~~~~m~~~~ 399 (445)
++.+|.+.|++++|...|++..+..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999988754
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.08 E-value=3.4e-08 Score=85.35 Aligned_cols=222 Identities=10% Similarity=0.048 Sum_probs=111.8
Q ss_pred cCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC--ChhHHHHHHHHHHHcCCCCchhhhhHHHHHH----HccCCh
Q 047840 141 ISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLG--AITQGLWVHSYAKRYHLEKNVILATAVVDMY----SKCGHV 214 (445)
Q Consensus 141 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g~~ 214 (445)
....++|+++++.++..+ +-+...|+.--..+...+ ++++++..++.+.... |-+..+|+.-...+ ...+
T Consensus 46 ~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~-- 121 (306)
T 3dra_A 46 EEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNN-- 121 (306)
T ss_dssp TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTT--
T ss_pred CCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhcc--
Confidence 334467888888877743 224455666666666666 7777777777777664 33444444333333 2220
Q ss_pred HHHHHHhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHH--HHHHHHHHhHH
Q 047840 215 HSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVR--DGLNLFENMSA 292 (445)
Q Consensus 215 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~ 292 (445)
..+++++++.+++++.+...+ +...|+.-...+.+.|.++ ++++.++.+.+
T Consensus 122 --------------------------~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~ 174 (306)
T 3dra_A 122 --------------------------NDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVID 174 (306)
T ss_dssp --------------------------TCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred --------------------------ccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHH
Confidence 003444455555544443222 4444444444444444444 45555555543
Q ss_pred hhCCCCChhHHHHHHHHHHhcCC------hHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChH-HHHHHHHHHHHhC
Q 047840 293 VYGVEPQLEHYACVVDLLARAGM------VEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIE-VGNRVWRKLAEMG 365 (445)
Q Consensus 293 ~~~~~~~~~~~~~l~~~~~~~g~------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~a~~~~~~~~~~~ 365 (445)
. -+-|...|+.-...+...+. ++++++.+++++... +-|...|+.+...+.+.|+.. .+..+.+++.+.+
T Consensus 175 ~--d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~ 251 (306)
T 3dra_A 175 T--DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLE 251 (306)
T ss_dssp H--CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGG
T ss_pred h--CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhcc
Confidence 2 12233344433333333333 455555555555444 445555555555555555432 2334444444433
Q ss_pred ---CCCchhHHHHHHHHHHcCChHHHHHHHHHHH
Q 047840 366 ---ITDFSTHVLSYNIYKEAGWDMEANKVRKLIS 396 (445)
Q Consensus 366 ---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 396 (445)
|.++.++..++.+|.+.|+.++|.++++.+.
T Consensus 252 ~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 252 KDQVTSSFALETLAKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp GTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 4455555555555555566666666555554
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=4e-09 Score=101.11 Aligned_cols=159 Identities=7% Similarity=-0.036 Sum_probs=111.3
Q ss_pred cCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCC---CChhhHHHHHHHHHhcCChHHHHHHH
Q 047840 176 LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN---KDAGAWNAMISGVAMNGDAKKSLELF 252 (445)
Q Consensus 176 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~ 252 (445)
.|++++|...++++.+.. +.+...+..+...+.+.|++++|...|++..+ .+...+..+...|...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 477888999998888764 44677888888899999999999999987654 35668888888999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhc---CChHHHHHHHHHHhcC
Q 047840 253 DRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARA---GMVEEAEKFIEEKMGG 329 (445)
Q Consensus 253 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~ 329 (445)
++..+.. +.+...+..+...+...|++++|.+.+++..+. .+.+...+..+..++... |+.++|.+.+++..+.
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9888763 235778888888899999999999999998864 133467778888888888 9999999999988776
Q ss_pred CCCCCHHHHH
Q 047840 330 LGGGDANVWG 339 (445)
Q Consensus 330 ~~~~~~~~~~ 339 (445)
+ +.+...+.
T Consensus 158 ~-p~~~~~~~ 166 (568)
T 2vsy_A 158 G-VGAVEPFA 166 (568)
T ss_dssp T-CCCSCHHH
T ss_pred C-CcccChHH
Confidence 5 33333343
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.3e-07 Score=81.66 Aligned_cols=235 Identities=11% Similarity=-0.001 Sum_probs=162.7
Q ss_pred HHcCC-ChHHHHHHhccCCC--C-ChhhHHHHHHHHHhcC--CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHH----Hcc
Q 047840 107 YGKMG-DFENARELFEKMPE--R-NAVSWSAIMAAYSRIS--DFKEVLSLFRQMQEVGMKPNESGLVSVLTAC----AHL 176 (445)
Q Consensus 107 ~~~~g-~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~----~~~ 176 (445)
..+.| ..++|+++++.+.. | +..+|+.--..+...| +++++++.++.+...+.+ +...|+.-...+ ...
T Consensus 42 ~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l 120 (306)
T 3dra_A 42 LMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELN 120 (306)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHT
T ss_pred HHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhc
Confidence 33444 45789999999875 4 4556887788888888 999999999999886432 556666554444 333
Q ss_pred ---CChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCChH--HHHHH
Q 047840 177 ---GAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAK--KSLEL 251 (445)
Q Consensus 177 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~ 251 (445)
+++++++.+++.+.+.. +-+..+ |+.-.-.+.+.|.++ ++++.
T Consensus 121 ~~~~~~~~EL~~~~~~l~~~-pkny~a-------------------------------W~~R~~vl~~l~~~~~~~EL~~ 168 (306)
T 3dra_A 121 NNDFDPYREFDILEAMLSSD-PKNHHV-------------------------------WSYRKWLVDTFDLHNDAKELSF 168 (306)
T ss_dssp TTCCCTHHHHHHHHHHHHHC-TTCHHH-------------------------------HHHHHHHHHHTTCTTCHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHhC-CCCHHH-------------------------------HHHHHHHHHHhcccChHHHHHH
Confidence 56666666666666553 333333 444334444445555 77888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHhhcCCc------HHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHH-HHHHHH
Q 047840 252 FDRMVKSGTQPTETTFVAVLTTCTHAKM------VRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEE-AEKFIE 324 (445)
Q Consensus 252 ~~~m~~~~~~p~~~~~~~l~~~~~~~~~------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~ 324 (445)
++++.+..+. |...|+.....+.+.+. ++++++.++.+... -+-|...|+.+...+.+.|+... +..+..
T Consensus 169 ~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~ 245 (306)
T 3dra_A 169 VDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSL 245 (306)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHH
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHH
Confidence 8888776543 66677666666666665 78888888888864 24567788888878888777444 556777
Q ss_pred HHhcCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH-hCCCCchhHHHHHH
Q 047840 325 EKMGGL--GGGDANVWGALLSACRIYGKIEVGNRVWRKLAE-MGITDFSTHVLSYN 377 (445)
Q Consensus 325 ~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~l~~ 377 (445)
++.+.+ -+.++..+..+..++.+.|+.++|.++++.+.+ .+|.+...|...+.
T Consensus 246 ~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 246 QFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp TTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHh
Confidence 665432 145778899999999999999999999999987 78887766665543
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.06 E-value=3.7e-09 Score=92.75 Aligned_cols=157 Identities=10% Similarity=-0.026 Sum_probs=104.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcC---CCCC--HHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCC----hh
Q 047840 231 AWNAMISGVAMNGDAKKSLELFDRMVKSG---TQPT--ETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ----LE 301 (445)
Q Consensus 231 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~---~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~ 301 (445)
+|+.+...|...|++++|+..|++....- -.|. ..++..+...|.. |++++|...|++......-..+ ..
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~ 156 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAE 156 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHH
Confidence 56666777777788888877777664421 1111 3466677777777 8899998888887754211111 45
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhcC----CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchh-----
Q 047840 302 HYACVVDLLARAGMVEEAEKFIEEKMGG----LGGGD-ANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFST----- 371 (445)
Q Consensus 302 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----- 371 (445)
++..+...|...|++++|+..|++.++. +..+. ...+..++.++...|++++|...|++.+ ..|.....
T Consensus 157 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~ 235 (307)
T 2ifu_A 157 LIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAA 235 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHH
Confidence 6777888888999999999998887653 11111 2356667777778899999999999998 88763322
Q ss_pred HHHHHHHHHHcCChHHHHH
Q 047840 372 HVLSYNIYKEAGWDMEANK 390 (445)
Q Consensus 372 ~~~l~~~~~~~g~~~~A~~ 390 (445)
...++.++ ..|+.+.+.+
T Consensus 236 l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 236 LEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHH-HhcCHHHHHH
Confidence 33444444 5677666555
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.04 E-value=5.7e-09 Score=77.98 Aligned_cols=109 Identities=5% Similarity=-0.134 Sum_probs=68.4
Q ss_pred HHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 047840 266 TFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSAC 345 (445)
Q Consensus 266 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 345 (445)
.+......+.+.|++++|+..|++..+. -+.+...|..+..+|.+.|++++|+..+++.++.. +.+...|..+..++
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 3445555666666666666666666643 12345566666666666666666666666666555 45566666666666
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 047840 346 RIYGKIEVGNRVWRKLAEMGITDFSTHVLSYN 377 (445)
Q Consensus 346 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 377 (445)
...|++++|++.|+++++.+|.+..++..+..
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSNEEAREGVRN 123 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 66677777777777777766666665555543
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.04 E-value=4.4e-09 Score=102.69 Aligned_cols=171 Identities=11% Similarity=-0.022 Sum_probs=135.0
Q ss_pred HccCChhHHHHHHHHHH--------HcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCC---CChhhHHHHHHHHHhc
Q 047840 174 AHLGAITQGLWVHSYAK--------RYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN---KDAGAWNAMISGVAMN 242 (445)
Q Consensus 174 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~ 242 (445)
...|++++|...++++. +.. +.+...+..+..++.+.|++++|...|++..+ .+...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 67888999999998887 332 45667788888889999999999999987754 4677888888999999
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 047840 243 GDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKF 322 (445)
Q Consensus 243 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 322 (445)
|++++|+..|++..+... -+...+..+..++.+.|++++ ...|+++.+. -+.+...|..+..++.+.|++++|.+.
T Consensus 481 g~~~~A~~~~~~al~l~P-~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFP-GELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999888643 256677888888999999999 9999998864 133567888889999999999999999
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHcCC
Q 047840 323 IEEKMGGLGGGDANVWGALLSACRIYGK 350 (445)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 350 (445)
|++..+.. +.+...+..+..++...++
T Consensus 557 ~~~al~l~-P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTS-RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTS-TTHHHHHHHHHHHTC----
T ss_pred HHhhcccC-cccHHHHHHHHHHHHccCC
Confidence 99987665 4456778888888766555
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.04 E-value=9.6e-09 Score=84.71 Aligned_cols=126 Identities=10% Similarity=-0.060 Sum_probs=94.7
Q ss_pred HHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 047840 267 FVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACR 346 (445)
Q Consensus 267 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 346 (445)
+..+...+...|++++|...|++.. .|+...+..+..+|...|++++|...+++..+.. +.+...+..+..++.
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 3344555667777888877777663 4566777777778888888888888888777655 556777888888888
Q ss_pred HcCChHHHHHHHHHHHHhCCCCc----------------hhHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 347 IYGKIEVGNRVWRKLAEMGITDF----------------STHVLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 347 ~~g~~~~a~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
..|++++|++.|+++++..|.+. .++..++.+|.+.|++++|.+.+++..+.
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 88888888888888888777655 67778888888888888888888877654
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.03 E-value=2.4e-08 Score=82.24 Aligned_cols=159 Identities=9% Similarity=0.012 Sum_probs=99.8
Q ss_pred hhhHHHHHHHccCChHHHHHHhhcCCC-CChhhHHHHHHHHHhcC----ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 047840 200 LATAVVDMYSKCGHVHSALSVFEGISN-KDAGAWNAMISGVAMNG----DAKKSLELFDRMVKSGTQPTETTFVAVLTTC 274 (445)
Q Consensus 200 ~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~----~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 274 (445)
.+..|...|...+++++|..+|++..+ .++.++..+...|.. + ++++|+.+|++..+.| +...+..+...|
T Consensus 20 a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg~~y 95 (212)
T 3rjv_A 20 AQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLARVL 95 (212)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 333334444444444444444443322 233344444444444 4 6777777777776654 455666666666
Q ss_pred hc----CCcHHHHHHHHHHhHHhhCCCCC---hhHHHHHHHHHHh----cCChHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 047840 275 TH----AKMVRDGLNLFENMSAVYGVEPQ---LEHYACVVDLLAR----AGMVEEAEKFIEEKMGGLGGGDANVWGALLS 343 (445)
Q Consensus 275 ~~----~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 343 (445)
.. .+++++|..+|++..+. .|+ +..+..|...|.. .+++++|..+|++..+. +.+...+..|..
T Consensus 96 ~~g~g~~~d~~~A~~~~~~A~~~---~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~Lg~ 170 (212)
T 3rjv_A 96 VNRQAGATDVAHAITLLQDAARD---SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYWAGM 170 (212)
T ss_dssp TCGGGSSCCHHHHHHHHHHHTSS---TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHHHHH
T ss_pred HcCCCCccCHHHHHHHHHHHHHc---CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHHHHH
Confidence 65 67888888888887743 332 6677777777777 77888888888888765 234456677777
Q ss_pred HHHHc-C-----ChHHHHHHHHHHHHhCCC
Q 047840 344 ACRIY-G-----KIEVGNRVWRKLAEMGIT 367 (445)
Q Consensus 344 ~~~~~-g-----~~~~a~~~~~~~~~~~~~ 367 (445)
.|... | +.++|...|+++.+.+.+
T Consensus 171 ~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 171 MFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 77653 3 788888888888887654
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.03 E-value=4.2e-09 Score=92.36 Aligned_cols=200 Identities=10% Similarity=-0.005 Sum_probs=145.9
Q ss_pred ccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 047840 175 HLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDR 254 (445)
Q Consensus 175 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 254 (445)
..|++++|..++++..+... .. + +...++++.|...|.+ ....|...|++++|...|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~-~~------~---~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLK-TS------F---MKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHC-CC------S---SSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcc-cc------c---cCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHH
Confidence 35667778887777765421 11 0 1114778888777654 35677788999999988887
Q ss_pred HHHc----CCCC-CHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCC--C--ChhHHHHHHHHHHhcCChHHHHHHHHH
Q 047840 255 MVKS----GTQP-TETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVE--P--QLEHYACVVDLLARAGMVEEAEKFIEE 325 (445)
Q Consensus 255 m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~--~~~~~~~l~~~~~~~g~~~~A~~~~~~ 325 (445)
.... |..+ -..+|+.+...|...|++++|...|++....+.-. + ...++..+..+|.. |++++|+..|++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 7553 1111 13477888888999999999999999887542111 1 13567788888888 999999999998
Q ss_pred HhcCCC---CC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCc------hhHHHHHHHHHHcCChHHHHHHHHH
Q 047840 326 KMGGLG---GG--DANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDF------STHVLSYNIYKEAGWDMEANKVRKL 394 (445)
Q Consensus 326 ~~~~~~---~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~ 394 (445)
.++... .+ ...++..+...+...|++++|+..|+++++..|.+. ..+..++.++...|++++|...+++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 765321 11 146788999999999999999999999999765432 2566777888889999999999998
Q ss_pred HH
Q 047840 395 IS 396 (445)
Q Consensus 395 m~ 396 (445)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 87
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.02 E-value=6.8e-09 Score=77.53 Aligned_cols=102 Identities=6% Similarity=-0.076 Sum_probs=93.0
Q ss_pred CCCC-hhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHH
Q 047840 296 VEPQ-LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVL 374 (445)
Q Consensus 296 ~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 374 (445)
+.|+ ...+......|.+.|++++|++.|++.++.. +.+..+|..+..++...|++++|+..++++++.+|.++.+|..
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 86 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIR 86 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 3444 4567778889999999999999999998877 6789999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhc
Q 047840 375 SYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 375 l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
++.+|...|++++|.+.|++..+.
T Consensus 87 lg~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 87 KAACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH
Confidence 999999999999999999998764
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.01 E-value=1e-07 Score=82.84 Aligned_cols=164 Identities=10% Similarity=-0.041 Sum_probs=124.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCC-CCCHH----HHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCC----hhHHH
Q 047840 234 AMISGVAMNGDAKKSLELFDRMVKSGT-QPTET----TFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ----LEHYA 304 (445)
Q Consensus 234 ~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ 304 (445)
..+..+...|++++|..++++...... .|+.. .+..+...+...+++++|...++.+.....-.++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346778889999999999999877422 23321 2334666677888999999999999864111223 23688
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhcC-----CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------chhH
Q 047840 305 CVVDLLARAGMVEEAEKFIEEKMGG-----LGGG-DANVWGALLSACRIYGKIEVGNRVWRKLAEMGITD------FSTH 372 (445)
Q Consensus 305 ~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~ 372 (445)
.+..+|...|++++|...++++++. +..+ ...++..+...|...|++++|+..++++++..+.. ..++
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 8999999999999999999998731 1122 23478899999999999999999999999854332 5678
Q ss_pred HHHHHHHHHcCC-hHHHHHHHHHHHh
Q 047840 373 VLSYNIYKEAGW-DMEANKVRKLISE 397 (445)
Q Consensus 373 ~~l~~~~~~~g~-~~~A~~~~~~m~~ 397 (445)
..++.+|.+.|+ +++|.+.+++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 899999999995 6999998887754
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.01 E-value=1.3e-08 Score=80.02 Aligned_cols=130 Identities=8% Similarity=-0.083 Sum_probs=107.2
Q ss_pred HHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 047840 265 TTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSA 344 (445)
Q Consensus 265 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 344 (445)
..+..+...+...|++++|...++..... .+.+...+..+..++...|++++|...+++..+.. +.+...+..+..+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 34566667778888999999999888864 23457778888889999999999999999988766 5678889999999
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCchhHHHHHH--HHHHcCChHHHHHHHHHHHh
Q 047840 345 CRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYN--IYKEAGWDMEANKVRKLISE 397 (445)
Q Consensus 345 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~m~~ 397 (445)
+...|++++|...++++++..|.+...+..+.. .+...|++++|.+.+.....
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999999999999988877754444 48888999999998887653
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.01 E-value=1.9e-08 Score=83.83 Aligned_cols=187 Identities=10% Similarity=0.015 Sum_probs=116.6
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC--chhhhhHHHHHHHccCChHHHHHHhhcCCC--C-Chh---hHH
Q 047840 162 NESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEK--NVILATAVVDMYSKCGHVHSALSVFEGISN--K-DAG---AWN 233 (445)
Q Consensus 162 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~---~~~ 233 (445)
+...+..+...+...|++++|...|+++.+..... ....+..+..+|.+.|++++|...|+++.+ | +.. ++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 34556666777888888888888888888763211 134566677788888888888888877643 2 221 344
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCCh-hHH---------
Q 047840 234 AMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL-EHY--------- 303 (445)
Q Consensus 234 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~--------- 303 (445)
.+..++...+.. .+ ..|..+...+...|++++|...|+++.+. .|+. ..+
T Consensus 83 ~~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l~~~ 142 (225)
T 2yhc_A 83 MRGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRLVFL 142 (225)
T ss_dssp HHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHHHHH
Confidence 444444432110 00 00111112223345556666666655542 2221 111
Q ss_pred --------HHHHHHHHhcCChHHHHHHHHHHhcCCCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCc
Q 047840 304 --------ACVVDLLARAGMVEEAEKFIEEKMGGLGGGDA---NVWGALLSACRIYGKIEVGNRVWRKLAEMGITDF 369 (445)
Q Consensus 304 --------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 369 (445)
..+...|.+.|++++|...|+++++.. +.+. ..+..+..++.+.|+.++|.+.++.+....|.+.
T Consensus 143 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 143 KDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDY-PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 245667889999999999999998764 2233 5688899999999999999999999999888754
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=2e-09 Score=83.06 Aligned_cols=98 Identities=16% Similarity=0.017 Sum_probs=83.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 047840 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIY 379 (445)
Q Consensus 300 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 379 (445)
...+..+...+...|++++|...|++.+... +.+...|..+..++...|++++|+..|+++++.+|+++.++..++.+|
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 4556667778888899999999998887766 667888888888888999999999999999999998888888999999
Q ss_pred HHcCChHHHHHHHHHHHhc
Q 047840 380 KEAGWDMEANKVRKLISET 398 (445)
Q Consensus 380 ~~~g~~~~A~~~~~~m~~~ 398 (445)
...|++++|.+.+++..+.
T Consensus 100 ~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999988887654
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.99 E-value=8.9e-09 Score=84.62 Aligned_cols=134 Identities=8% Similarity=-0.004 Sum_probs=70.2
Q ss_pred HHHHHHHccCChHHHHHHhhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCc
Q 047840 203 AVVDMYSKCGHVHSALSVFEGISN---KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKM 279 (445)
Q Consensus 203 ~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 279 (445)
.+..+|.+.|++++|...|++..+ .+...+..+...+...|++++|+..|++..+... -+..++..+...|...|+
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEA-DNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHhH
Confidence 355556666666666666655432 2455666666666666777777777776666532 245555555555544332
Q ss_pred --HHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 047840 280 --VRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALL 342 (445)
Q Consensus 280 --~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 342 (445)
.+.+...++... ...|....+.....++...|++++|...|++.++. .|+......+.
T Consensus 138 ~~~~~~~~~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~~l~ 197 (208)
T 3urz_A 138 QEKKKLETDYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQKTLD 197 (208)
T ss_dssp HHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHHHHH
Confidence 233344444433 11222222333444555567777777777776643 35554444433
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.2e-08 Score=83.88 Aligned_cols=124 Identities=6% Similarity=-0.061 Sum_probs=69.7
Q ss_pred HHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcC
Q 047840 270 VLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYG 349 (445)
Q Consensus 270 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 349 (445)
+..++.+.|++++|...|++..+. -+.+...+..+..++...|++++|...|++.++.. +.+..+|..+..+|...|
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHh
Confidence 555666667777777777666653 12245566666666666777777777777666555 455666666666655443
Q ss_pred C--hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 047840 350 K--IEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISE 397 (445)
Q Consensus 350 ~--~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 397 (445)
+ .+.+...++++....|. ...+...+.++...|++++|...+++..+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~-~~a~~~~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 137 EQEKKKLETDYKKLSSPTKM-QYARYRDGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp HHHHHHHHHHHC---CCCHH-HHHHHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhCCCch-hHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 2 23344444444322111 12344455566666677777777666543
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.98 E-value=1.5e-08 Score=75.19 Aligned_cols=117 Identities=11% Similarity=0.122 Sum_probs=93.4
Q ss_pred HHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 047840 264 ETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLS 343 (445)
Q Consensus 264 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 343 (445)
...+..+...+...|++++|...++++... .+.+...+..+...+...|++++|...++++.+.. +.+..++..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 85 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHH
Confidence 456667777788888888888888888764 23456677788888888899999999888887665 567788888888
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcC
Q 047840 344 ACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG 383 (445)
Q Consensus 344 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 383 (445)
.+...|++++|...++++.+..|.++..+..++.++.+.|
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 8999999999999999999988888888888887776554
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=4.3e-08 Score=84.90 Aligned_cols=162 Identities=9% Similarity=0.027 Sum_probs=106.8
Q ss_pred CCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCC--CChhhHH-HHH
Q 047840 160 KPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN--KDAGAWN-AMI 236 (445)
Q Consensus 160 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~-~l~ 236 (445)
+.+...+..+...+...|++++|...|+++.+.. |.+...+..+..++.+.|++++|...++++.. |+..... ...
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~ 192 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ 192 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence 3455666677777788888888888888888775 45667777788888888888888888887765 3322221 222
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCC---hhHHHHHHHHHHhc
Q 047840 237 SGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ---LEHYACVVDLLARA 313 (445)
Q Consensus 237 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 313 (445)
..+...++.+.|+..+++..... +.+...+..+...+...|++++|...|.++.+. .|+ ...+..++..+...
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~---~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRX---DLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc---ccccccchHHHHHHHHHHHc
Confidence 23555666666777777766653 235566666666777777777777777777654 232 44566666666667
Q ss_pred CChHHHHHHHHHH
Q 047840 314 GMVEEAEKFIEEK 326 (445)
Q Consensus 314 g~~~~A~~~~~~~ 326 (445)
|+.++|...|++.
T Consensus 269 g~~~~a~~~~r~a 281 (287)
T 3qou_A 269 GTGDALASXYRRQ 281 (287)
T ss_dssp CTTCHHHHHHHHH
T ss_pred CCCCcHHHHHHHH
Confidence 7766666666654
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.97 E-value=1e-08 Score=81.84 Aligned_cols=119 Identities=8% Similarity=0.015 Sum_probs=60.6
Q ss_pred cCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHH-HHHcCCh--H
Q 047840 276 HAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSA-CRIYGKI--E 352 (445)
Q Consensus 276 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~ 352 (445)
..|++++|...++..... .+.+...+..+...|...|++++|...|++..+.. +.+...+..+..+ +...|++ +
T Consensus 22 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp -----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 344555555555555432 12234455555555555555555555555554443 3344555555555 4455555 5
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 047840 353 VGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISE 397 (445)
Q Consensus 353 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 397 (445)
+|...++++++..|.++.++..++.+|...|++++|...+++..+
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 555555555555555555555555555555555555555555544
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.97 E-value=6.5e-08 Score=90.27 Aligned_cols=356 Identities=8% Similarity=-0.052 Sum_probs=216.6
Q ss_pred hcC-CchHHHHHHHHHHhcCCCCCcccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCC-HHH
Q 047840 7 QAN-FPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHK-MGT 84 (445)
Q Consensus 7 ~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~ 84 (445)
+.| +++.|..+|+.+... -|. ++++ .+..+|+..+.. .|+...|...+....+.++ .+.
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e-~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~ 66 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYR-SLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFK 66 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHH-HHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----C
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHH-HHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHH
Confidence 456 478888888887763 244 7788 999999998883 5799999988888777763 344
Q ss_pred HHHHhccCC------CCChhhHHHHHHHHH----cCCChHHHHHHhccCCC-CC--h-hhHHHHHHHHH-----------
Q 047840 85 ARALFDKSP------DRDVVTWTTMVDGYG----KMGDFENARELFEKMPE-RN--A-VSWSAIMAAYS----------- 139 (445)
Q Consensus 85 a~~~~~~~~------~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~-~~--~-~~~~~l~~~~~----------- 139 (445)
...+|+... ..+...|...+.-+. ..|+.+.+..+|++... |. . ..|......-.
T Consensus 67 i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~ 146 (493)
T 2uy1_A 67 LYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIV 146 (493)
T ss_dssp THHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHH
Confidence 555665432 235677777776554 24678889999988765 31 1 11221111100
Q ss_pred --hcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC-------ChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHc
Q 047840 140 --RISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLG-------AITQGLWVHSYAKRYHLEKNVILATAVVDMYSK 210 (445)
Q Consensus 140 --~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 210 (445)
..+.+..|..+++.+...-...+...|...+..-...+ ..+.+..+|++++... +.+..+|...+..+.+
T Consensus 147 ~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~ 225 (493)
T 2uy1_A 147 GDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIG 225 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 11233344444544432100013334554444432211 1345678899988764 5567788888888899
Q ss_pred cCChHHHHHHhhcCCC-CC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHcC---------CCC---CHHHHHHHHHHhhc
Q 047840 211 CGHVHSALSVFEGISN-KD-AGAWNAMISGVAMNGDAKKSLELFDRMVKSG---------TQP---TETTFVAVLTTCTH 276 (445)
Q Consensus 211 ~g~~~~a~~~~~~~~~-~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~---------~~p---~~~~~~~l~~~~~~ 276 (445)
.|+.+.|..+|++... |+ ...|. .|....+.++. ++.+.+.- ..+ ....|...+....+
T Consensus 226 ~~~~~~ar~i~erAi~~P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r 298 (493)
T 2uy1_A 226 IGQKEKAKKVVERGIEMSDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLK 298 (493)
T ss_dssp TTCHHHHHHHHHHHHHHCCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhCCCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHH
Confidence 9999999999986543 32 22222 22222111222 22222210 011 12345556666666
Q ss_pred CCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHh-cCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHH
Q 047840 277 AKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLAR-AGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGN 355 (445)
Q Consensus 277 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 355 (445)
.++.+.|..+|+.+ .. ...+...|...+..-.. .++.+.|..+|+...+.. +.++..|...++.....|+.+.|.
T Consensus 299 ~~~~~~AR~i~~~A-~~--~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR 374 (493)
T 2uy1_A 299 KRGLELFRKLFIEL-GN--EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENAR 374 (493)
T ss_dssp HHCHHHHHHHHHHH-TT--SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred cCCHHHHHHHHHHh-hC--CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 78899999999999 32 12344455433322222 346999999999988754 445667777888888899999999
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 047840 356 RVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISE 397 (445)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 397 (445)
.+|+++ +.....|...+..-...|+.+.+..++++..+
T Consensus 375 ~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 375 ALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999997 33566777788777888999999998888764
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.6e-08 Score=80.59 Aligned_cols=158 Identities=15% Similarity=0.072 Sum_probs=108.6
Q ss_pred hhHHHHHHHccCChHHHHHHhhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-hhc
Q 047840 201 ATAVVDMYSKCGHVHSALSVFEGISN---KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTT-CTH 276 (445)
Q Consensus 201 ~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~-~~~ 276 (445)
+..+...+.+.|++++|...|++... .+...+..+...+...|++++|+..+++..... |+.......... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHh
Confidence 44456667777888888888877664 355677777777888888888888887765542 233322221111 112
Q ss_pred CCcHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHHcCChHHH
Q 047840 277 AKMVRDGLNLFENMSAVYGVEP-QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGG-DANVWGALLSACRIYGKIEVG 354 (445)
Q Consensus 277 ~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a 354 (445)
.++...|...+++..+. .| +...+..+..++...|++++|...|+++++....+ +...+..+...+...|+.++|
T Consensus 87 ~~~~~~a~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 87 QAAESPELKRLEQELAA---NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHTSCHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred hcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 12223467778877754 34 47778888888999999999999999888765222 356788888899999999999
Q ss_pred HHHHHHHHH
Q 047840 355 NRVWRKLAE 363 (445)
Q Consensus 355 ~~~~~~~~~ 363 (445)
...|++.+.
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998887764
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.5e-08 Score=76.26 Aligned_cols=119 Identities=8% Similarity=-0.111 Sum_probs=87.7
Q ss_pred CHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 047840 263 TETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALL 342 (445)
Q Consensus 263 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 342 (445)
+...+..+...+...|++++|...+++.... .+.+...+..+..++...|++++|...+++..+.. +.+...+..+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 91 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKA 91 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 4455666666777777777777777777642 22356667777777777888888888888777655 45677788888
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCC
Q 047840 343 SACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGW 384 (445)
Q Consensus 343 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 384 (445)
.++...|++++|.+.++++.+..|.+...+..++.++...|+
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 888888888888888888888888877778778777776653
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.96 E-value=1.7e-08 Score=75.65 Aligned_cols=120 Identities=7% Similarity=-0.060 Sum_probs=99.4
Q ss_pred CHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 047840 263 TETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALL 342 (445)
Q Consensus 263 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 342 (445)
+...+..+...+...|++++|...++..... .+.+...+..+..++...|++++|...+++..+.. +.+...+..+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~ 87 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHH
Confidence 3456666777788888888898888888764 23456777888888889999999999999887765 56688888999
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCh
Q 047840 343 SACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWD 385 (445)
Q Consensus 343 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 385 (445)
..+...|++++|...++++.+..|.++..+..++.++.+.|++
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999998888888999998888875
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.95 E-value=9.9e-08 Score=82.98 Aligned_cols=167 Identities=10% Similarity=-0.032 Sum_probs=123.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-H----HHHHHHHHHhhcCCcHHHHHHHHHHhHHhhC--CCCC--hh
Q 047840 231 AWNAMISGVAMNGDAKKSLELFDRMVKSGTQPT-E----TTFVAVLTTCTHAKMVRDGLNLFENMSAVYG--VEPQ--LE 301 (445)
Q Consensus 231 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~--~~ 301 (445)
.+...+..+...|++++|++.+.+..+...... . ..+..+...+...|++++|...+++...... ..+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 445566778889999999999988877532211 1 2233455567788999999999998874311 1111 44
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhc---CC-CCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC------Cc
Q 047840 302 HYACVVDLLARAGMVEEAEKFIEEKMG---GL-GGG--DANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT------DF 369 (445)
Q Consensus 302 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~-~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------~~ 369 (445)
+++.+...|...|++++|...+++..+ .. ..+ ...++..+...|...|++++|+..++++++..+. -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 788889999999999999999998762 21 111 1258889999999999999999999999875432 15
Q ss_pred hhHHHHHHHHHHcCChHHH-HHHHHHHHh
Q 047840 370 STHVLSYNIYKEAGWDMEA-NKVRKLISE 397 (445)
Q Consensus 370 ~~~~~l~~~~~~~g~~~~A-~~~~~~m~~ 397 (445)
.++..++.+|.+.|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 5788899999999999999 777776653
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.93 E-value=7.9e-08 Score=79.15 Aligned_cols=128 Identities=13% Similarity=-0.041 Sum_probs=75.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcC
Q 047840 235 MISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAG 314 (445)
Q Consensus 235 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 314 (445)
+...+...|++++|+..|++. +.|+...+..+...+...|++++|...++..... .+.+...+..+..+|...|
T Consensus 12 ~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 12 EGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcc
Confidence 344444555555555555444 2334455555555555555555555555555543 1223445555555666666
Q ss_pred ChHHHHHHHHHHhcCC--------------CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 047840 315 MVEEAEKFIEEKMGGL--------------GGG-DANVWGALLSACRIYGKIEVGNRVWRKLAEMGITD 368 (445)
Q Consensus 315 ~~~~A~~~~~~~~~~~--------------~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 368 (445)
++++|...|++..+.. ..| ....+..+..++...|++++|.+.|+++++..|.+
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 6666666666555432 111 23677888888888888888888888888888864
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.92 E-value=2.2e-08 Score=76.57 Aligned_cols=98 Identities=16% Similarity=-0.052 Sum_probs=81.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 047840 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIY 379 (445)
Q Consensus 300 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 379 (445)
...+..+...+.+.|++++|...|++++... +.+...|..+..++...|++++|+..|+++++.+|.++.++..++.+|
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 3445566777888888899988888887766 667888888888888889999999999999888888888888888889
Q ss_pred HHcCChHHHHHHHHHHHhc
Q 047840 380 KEAGWDMEANKVRKLISET 398 (445)
Q Consensus 380 ~~~g~~~~A~~~~~~m~~~ 398 (445)
...|++++|.+.+++..+.
T Consensus 97 ~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 9999999998888887654
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.91 E-value=2.2e-08 Score=88.84 Aligned_cols=95 Identities=6% Similarity=-0.059 Sum_probs=85.8
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 047840 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIY 379 (445)
Q Consensus 300 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 379 (445)
...|..+..+|.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|+..|+++++..|.+..++..++.++
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~ 274 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQ 274 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 4678888999999999999999999998876 678899999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHH-HHHHH
Q 047840 380 KEAGWDMEANK-VRKLI 395 (445)
Q Consensus 380 ~~~g~~~~A~~-~~~~m 395 (445)
.+.|++++|.. .++.|
T Consensus 275 ~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 275 QRIRRQLAREKKLYANM 291 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999844 55555
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.90 E-value=2.5e-08 Score=74.51 Aligned_cols=98 Identities=10% Similarity=-0.154 Sum_probs=74.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 047840 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIY 379 (445)
Q Consensus 300 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 379 (445)
...+..+...+.+.|++++|...|++.++.. +.+...|..+..++...|++++|+..++++++.+|.++.++..++.++
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 3455666677777888888888888777665 556777788888888888888888888888888888777888888888
Q ss_pred HHcCChHHHHHHHHHHHhc
Q 047840 380 KEAGWDMEANKVRKLISET 398 (445)
Q Consensus 380 ~~~g~~~~A~~~~~~m~~~ 398 (445)
...|++++|...+++..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 8888888888877777653
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.85 E-value=4.3e-08 Score=71.13 Aligned_cols=101 Identities=13% Similarity=0.023 Sum_probs=84.6
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--CchhHHHHH
Q 047840 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT--DFSTHVLSY 376 (445)
Q Consensus 299 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~ 376 (445)
+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++++++..|. +...+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 35566777788888899999999988887765 567788888888899999999999999999998888 888888999
Q ss_pred HHHHHc-CChHHHHHHHHHHHhcCC
Q 047840 377 NIYKEA-GWDMEANKVRKLISETGM 400 (445)
Q Consensus 377 ~~~~~~-g~~~~A~~~~~~m~~~~~ 400 (445)
.++... |++++|.+.+++..+..-
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhccc
Confidence 999999 999999999988876543
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.84 E-value=8.1e-08 Score=72.79 Aligned_cols=100 Identities=12% Similarity=-0.109 Sum_probs=76.2
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 047840 298 PQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYN 377 (445)
Q Consensus 298 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 377 (445)
.+...+..+...+...|++++|...|++.+... +.+...|..+..++...|++++|...++++++..|.++.++..++.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 356667777777777888888888887776655 5567777777778888888888888888888888877777888888
Q ss_pred HHHHcCChHHHHHHHHHHHhc
Q 047840 378 IYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 378 ~~~~~g~~~~A~~~~~~m~~~ 398 (445)
+|...|++++|...+++..+.
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHH
Confidence 888888888888877777653
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=1.5e-08 Score=78.16 Aligned_cols=108 Identities=6% Similarity=-0.122 Sum_probs=90.9
Q ss_pred CHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 047840 263 TETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALL 342 (445)
Q Consensus 263 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 342 (445)
+...+..+...+...|++++|...|+.+... -+.+...|..+..+|...|++++|...|++.+... +.++..+..+.
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg 96 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAA 96 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHH
Confidence 3445666777888999999999999998864 23467788888999999999999999999988776 66788899999
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCCchhHH
Q 047840 343 SACRIYGKIEVGNRVWRKLAEMGITDFSTHV 373 (445)
Q Consensus 343 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 373 (445)
.++...|++++|...|+++++..|.++....
T Consensus 97 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 127 (148)
T 2vgx_A 97 ECLLQXGELAEAESGLFLAQELIANXPEFXE 127 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence 9999999999999999999999988765533
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.82 E-value=3.7e-08 Score=72.92 Aligned_cols=96 Identities=9% Similarity=-0.111 Sum_probs=86.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 047840 302 HYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKE 381 (445)
Q Consensus 302 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 381 (445)
.+..+...+.+.|++++|...|++.++.. +.+...|..+..++...|++++|+..|+++++.+|.++.++..++.+|..
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34566778889999999999999998776 66889999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHhc
Q 047840 382 AGWDMEANKVRKLISET 398 (445)
Q Consensus 382 ~g~~~~A~~~~~~m~~~ 398 (445)
.|++++|...+++..+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 98 EHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 99999999999988653
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.81 E-value=6.1e-08 Score=76.19 Aligned_cols=111 Identities=11% Similarity=-0.022 Sum_probs=94.9
Q ss_pred CHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 047840 263 TETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALL 342 (445)
Q Consensus 263 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 342 (445)
+...+..+...+...|++++|...|++..+. .+.+...|..+..+|...|++++|+..|++.++.. +.+...|..+.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 4567778888899999999999999999875 23467788889999999999999999999998776 66788999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHH
Q 047840 343 SACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY 376 (445)
Q Consensus 343 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 376 (445)
.++...|++++|...|+++++..|.+...+....
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 9999999999999999999999998877555443
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.80 E-value=4.8e-07 Score=78.64 Aligned_cols=160 Identities=11% Similarity=-0.034 Sum_probs=120.1
Q ss_pred HHHHHHccCChHHHHHHhhcCCCC---Chh------hHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----HHHHHH
Q 047840 204 VVDMYSKCGHVHSALSVFEGISNK---DAG------AWNAMISGVAMNGDAKKSLELFDRMVKSGTQ-PT----ETTFVA 269 (445)
Q Consensus 204 l~~~~~~~g~~~~a~~~~~~~~~~---~~~------~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~~ 269 (445)
.+..+...|++++|..++++.... +.. .+..+...+...+++++|+..+++....... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 466778889999999998876542 111 2334666777788999999999999874222 22 236888
Q ss_pred HHHHhhcCCcHHHHHHHHHHhHHhhC----CCCC-hhHHHHHHHHHHhcCChHHHHHHHHHHhcC----CCCCC-HHHHH
Q 047840 270 VLTTCTHAKMVRDGLNLFENMSAVYG----VEPQ-LEHYACVVDLLARAGMVEEAEKFIEEKMGG----LGGGD-ANVWG 339 (445)
Q Consensus 270 l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~ 339 (445)
+...|...|++++|...++++.+... ..+. ..++..+..+|.+.|++++|...+++.++. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 88999999999999999999885221 1111 346788889999999999999999887542 22222 67899
Q ss_pred HHHHHHHHcCC-hHHHHHHHHHHHH
Q 047840 340 ALLSACRIYGK-IEVGNRVWRKLAE 363 (445)
Q Consensus 340 ~l~~~~~~~g~-~~~a~~~~~~~~~ 363 (445)
.+..++...|+ +++|.+.+++++.
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999995 6999999999887
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.80 E-value=6.3e-08 Score=74.55 Aligned_cols=102 Identities=3% Similarity=-0.120 Sum_probs=79.7
Q ss_pred HHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 047840 265 TTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSA 344 (445)
Q Consensus 265 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 344 (445)
..+..+...+.+.|++++|...|+.+... -+.+...|..+..+|...|++++|...|++..+.. +.++..|..+..+
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence 45666666777888888888888888764 13356777788888888888888888888887766 5567788888888
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCc
Q 047840 345 CRIYGKIEVGNRVWRKLAEMGITDF 369 (445)
Q Consensus 345 ~~~~g~~~~a~~~~~~~~~~~~~~~ 369 (445)
|...|++++|+..|+++++..|+++
T Consensus 114 ~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 8888888888888888888887643
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.80 E-value=5.9e-08 Score=77.33 Aligned_cols=129 Identities=9% Similarity=0.155 Sum_probs=104.3
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHH-HHhcCCh--
Q 047840 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDL-LARAGMV-- 316 (445)
Q Consensus 240 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~-- 316 (445)
...|++++|+..+++..... +.+...+..+...+...|++++|...|+++.... +.+...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcch
Confidence 45678889999999887763 3467788888889999999999999999998652 3456777788888 7789998
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhH
Q 047840 317 EEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTH 372 (445)
Q Consensus 317 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 372 (445)
++|...++++++.. +.+...+..+...+...|++++|...++++++..|+++...
T Consensus 98 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 98 AQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 99999999988776 56788899999999999999999999999999999876443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.80 E-value=6.3e-08 Score=72.37 Aligned_cols=97 Identities=8% Similarity=-0.107 Sum_probs=79.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCc-------hhHH
Q 047840 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDF-------STHV 373 (445)
Q Consensus 301 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-------~~~~ 373 (445)
..+..+...+.+.|++++|+..|++.++.. +.+...|..+..+|...|++++|++.++++++..|.+. .++.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 456677888888999999999999888766 66788888899999999999999999999988777643 3566
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 374 LSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 374 ~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
.++.++...|++++|.+.+++..+.
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 7788888899999999988877653
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.80 E-value=1.1e-07 Score=71.36 Aligned_cols=100 Identities=9% Similarity=-0.081 Sum_probs=91.8
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 047840 298 PQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYN 377 (445)
Q Consensus 298 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 377 (445)
.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++++++..|.++.++..++.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 346677888899999999999999999998776 5688999999999999999999999999999999999999999999
Q ss_pred HHHHcCChHHHHHHHHHHHhc
Q 047840 378 IYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 378 ~~~~~g~~~~A~~~~~~m~~~ 398 (445)
++.+.|++++|.+.+++..+.
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHh
Confidence 999999999999999988764
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.79 E-value=1.4e-07 Score=69.14 Aligned_cols=109 Identities=9% Similarity=-0.019 Sum_probs=59.3
Q ss_pred HHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 047840 266 TFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSAC 345 (445)
Q Consensus 266 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 345 (445)
.+..+...+...|++++|...++..... .+.+...+..+..++...|++++|...+++..+.. +.+...+..+..++
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 3444444555555555555555555542 12234455555555555666666666665555443 33455555566666
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 047840 346 RIYGKIEVGNRVWRKLAEMGITDFSTHVLSYN 377 (445)
Q Consensus 346 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 377 (445)
...|++++|.+.++++.+..|.++..+..+..
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 114 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQN 114 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 66666666666666666666655544444443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.8e-07 Score=78.98 Aligned_cols=138 Identities=12% Similarity=-0.001 Sum_probs=96.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCC--hhHHHHHHHHH
Q 047840 233 NAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ--LEHYACVVDLL 310 (445)
Q Consensus 233 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~ 310 (445)
..+...+...|++++|.++|..+...+ |+......+...+.+.+++++|+..|+..... . .|. ...+..+..++
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHHH
Confidence 345566677778888887777765543 44334444445677888888888888755431 1 111 23566778888
Q ss_pred HhcCChHHHHHHHHHHhcCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHH
Q 047840 311 ARAGMVEEAEKFIEEKMGGLGGGD--ANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLS 375 (445)
Q Consensus 311 ~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 375 (445)
...|++++|+..|++.......|. ...+.....++.+.|+.++|...|+++...+|. ......|
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 899999999999998875443243 446777788889999999999999999999987 5555444
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.2e-07 Score=70.78 Aligned_cols=113 Identities=8% Similarity=-0.085 Sum_probs=92.0
Q ss_pred HHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 047840 264 ETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLS 343 (445)
Q Consensus 264 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 343 (445)
...+......+.+.|++++|...|++..+. .+.+...|..+..+|...|++++|...+++.++.. +.+...|..+..
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 345666677788889999999999888864 23457788888899999999999999999988776 667888999999
Q ss_pred HHHHcCChHHHHHHHHHHHHhC------CCCchhHHHHHHHH
Q 047840 344 ACRIYGKIEVGNRVWRKLAEMG------ITDFSTHVLSYNIY 379 (445)
Q Consensus 344 ~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~l~~~~ 379 (445)
++...|++++|...|+++++.. |.+..+...+..+.
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 9999999999999999999988 77666666665544
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.78 E-value=1e-07 Score=77.48 Aligned_cols=168 Identities=5% Similarity=-0.066 Sum_probs=104.3
Q ss_pred HHccCChHHHHHHhhcCCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHH
Q 047840 208 YSKCGHVHSALSVFEGISNK---DAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGL 284 (445)
Q Consensus 208 ~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 284 (445)
....|+++++.+.++..... ....+..+...+...|++++|+..|++..... |+...+...
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~-------------- 77 (198)
T 2fbn_A 14 RENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQ-------------- 77 (198)
T ss_dssp --------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTCCCH--------------
T ss_pred hhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--hcccccchh--------------
Confidence 33445555555555432221 23345555666666666777766666665532 111100000
Q ss_pred HHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 047840 285 NLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEM 364 (445)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 364 (445)
....-.. ......+..+..+|...|++++|...+++.++.. +.+...+..+..++...|++++|...|+++++.
T Consensus 78 -~~~~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 78 -ILLDKKK----NIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp -HHHHHHH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -hHHHHHH----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 0000000 0013567788888999999999999999988776 678889999999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHHcCChHHHH-HHHHHHHh
Q 047840 365 GITDFSTHVLSYNIYKEAGWDMEAN-KVRKLISE 397 (445)
Q Consensus 365 ~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~m~~ 397 (445)
.|.+..++..+..++...|+..++. ..+..|-.
T Consensus 152 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 152 NPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999988888877 45555543
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.78 E-value=1.4e-07 Score=69.01 Aligned_cols=99 Identities=9% Similarity=-0.100 Sum_probs=90.2
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 047840 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNI 378 (445)
Q Consensus 299 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 378 (445)
+...+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...++++.+..|.++..+..++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 81 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 34567778888999999999999999998766 56888999999999999999999999999999999999999999999
Q ss_pred HHHcCChHHHHHHHHHHHhc
Q 047840 379 YKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 379 ~~~~g~~~~A~~~~~~m~~~ 398 (445)
+...|++++|.+.+++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhhHHHHHHHHHHHHHc
Confidence 99999999999999988764
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.77 E-value=9.2e-08 Score=73.11 Aligned_cols=108 Identities=8% Similarity=-0.029 Sum_probs=88.8
Q ss_pred HHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 047840 265 TTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSA 344 (445)
Q Consensus 265 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 344 (445)
..+..+...+...|++++|...|+.+... -+.+...|..+..+|...|++++|...|++.+... +.++..+..+..+
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHH
Confidence 34555666788889999999999988864 23467778888889999999999999999988776 6677888899999
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCchhHHHH
Q 047840 345 CRIYGKIEVGNRVWRKLAEMGITDFSTHVLS 375 (445)
Q Consensus 345 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 375 (445)
+...|++++|...|+++++..|.++......
T Consensus 96 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 126 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARALAAAQPAHEALA 126 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCcchHHHH
Confidence 9999999999999999999998877655443
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.77 E-value=1.6e-07 Score=69.53 Aligned_cols=98 Identities=17% Similarity=0.115 Sum_probs=90.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 047840 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIY 379 (445)
Q Consensus 300 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 379 (445)
...+..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|...++++.+..|.++.++..++.++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 5677888899999999999999999998765 567889999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHhc
Q 047840 380 KEAGWDMEANKVRKLISET 398 (445)
Q Consensus 380 ~~~g~~~~A~~~~~~m~~~ 398 (445)
...|++++|...++++.+.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHh
Confidence 9999999999999998765
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.76 E-value=2.2e-07 Score=75.66 Aligned_cols=156 Identities=8% Similarity=-0.048 Sum_probs=86.8
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhC---CCC-ChhHHHHHHHHHHhcCCh
Q 047840 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG---VEP-QLEHYACVVDLLARAGMV 316 (445)
Q Consensus 241 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~-~~~~~~~l~~~~~~~g~~ 316 (445)
..|++++|.+.++.+... .......+..+...+...|++++|...+++...... ..| ....+..+...|...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 345666666643333221 112344555555566666666666666665554211 111 234455666667777777
Q ss_pred HHHHHHHHHHhcC--CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC--CC----chhHHHHHHHHHHcCC
Q 047840 317 EEAEKFIEEKMGG--LGGGD----ANVWGALLSACRIYGKIEVGNRVWRKLAEMGI--TD----FSTHVLSYNIYKEAGW 384 (445)
Q Consensus 317 ~~A~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~----~~~~~~l~~~~~~~g~ 384 (445)
++|...+++..+. ..+.+ ...+..+...+...|++++|...+++.++..+ .+ ..++..++.++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 7777777665432 11111 34466667777777777777777777765322 11 1234567777777777
Q ss_pred hHHHHHHHHHHHh
Q 047840 385 DMEANKVRKLISE 397 (445)
Q Consensus 385 ~~~A~~~~~~m~~ 397 (445)
+++|.+.+++..+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777766654
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.75 E-value=3.3e-07 Score=70.27 Aligned_cols=113 Identities=9% Similarity=-0.022 Sum_probs=76.3
Q ss_pred CHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHH
Q 047840 263 TETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ----LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVW 338 (445)
Q Consensus 263 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 338 (445)
+...+..+...+...|++++|...|++..+ ..|+ ...+..+..+|...|++++|...+++..+.. +.+...+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 102 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL 102 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence 444555566666666677777776666663 2444 4566666777777777777777777766554 4466777
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 047840 339 GALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIY 379 (445)
Q Consensus 339 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 379 (445)
..+..++...|++++|...|+++++..|.+..++..+..+.
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 77777777788888888888888877777766665555443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.75 E-value=2e-07 Score=73.16 Aligned_cols=95 Identities=5% Similarity=-0.181 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 047840 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYK 380 (445)
Q Consensus 301 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 380 (445)
..+..+...+...|++++|+..|++.++.. +.+...|..+..+|...|++++|+..++++++.+|.++.++..++.+|.
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 334444445555555555555555544433 3344455555555555555555555555555555555555555555555
Q ss_pred HcCChHHHHHHHHHHH
Q 047840 381 EAGWDMEANKVRKLIS 396 (445)
Q Consensus 381 ~~g~~~~A~~~~~~m~ 396 (445)
..|++++|...+++..
T Consensus 91 ~~g~~~~A~~~~~~al 106 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGI 106 (164)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHH
Confidence 5555555555555444
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.75 E-value=4e-07 Score=71.37 Aligned_cols=130 Identities=6% Similarity=-0.075 Sum_probs=104.7
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHH
Q 047840 230 GAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDL 309 (445)
Q Consensus 230 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 309 (445)
..+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...+++.... .+.+...+..+..+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 456777788889999999999999988763 336778888888899999999999999999864 24457788888999
Q ss_pred HHhcCChHHHHHHHHHHhcCCCCCCHHHHHHH--HHHHHHcCChHHHHHHHHHHHH
Q 047840 310 LARAGMVEEAEKFIEEKMGGLGGGDANVWGAL--LSACRIYGKIEVGNRVWRKLAE 363 (445)
Q Consensus 310 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~a~~~~~~~~~ 363 (445)
+...|++++|...+++..+.. +.+...+..+ +..+...|++++|...+++...
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999999988765 4566666444 4447788999999999888765
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=8.3e-06 Score=71.28 Aligned_cols=233 Identities=9% Similarity=0.024 Sum_probs=137.6
Q ss_pred HHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC-ChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHcc-C-C
Q 047840 137 AYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLG-AITQGLWVHSYAKRYHLEKNVILATAVVDMYSKC-G-H 213 (445)
Q Consensus 137 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~ 213 (445)
...+.+..++|++++++++..+ +-+...|+.--..+...+ ++++++.+++.+.... +.+..+|+.-..++.+. + +
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSC
T ss_pred HHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCC
Confidence 3344555667888888887753 224556666666666667 4888888888887765 45666666665555555 5 7
Q ss_pred hHHHHHHhhcCCCC---ChhhHHHHHHHHHhcCChH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCc---
Q 047840 214 VHSALSVFEGISNK---DAGAWNAMISGVAMNGDAK--------KSLELFDRMVKSGTQPTETTFVAVLTTCTHAKM--- 279 (445)
Q Consensus 214 ~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~--------~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~--- 279 (445)
+++++.+++++.+. |..+|+.-.-.+.+.|.++ ++++.++++.+..+. |...|+.....+.+.++
T Consensus 141 ~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 141 PVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp CHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcccccc
Confidence 77888888777664 4445555444444444444 778888888776543 66777777666666654
Q ss_pred ----HHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCCh--------------------HHHHHHHHHHhcCC-----
Q 047840 280 ----VRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMV--------------------EEAEKFIEEKMGGL----- 330 (445)
Q Consensus 280 ----~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~~----- 330 (445)
++++++.++++... .+-|...|+.+-..+.+.|+. .+..++..++....
T Consensus 220 ~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDT 297 (349)
T ss_dssp CHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSC
T ss_pred chHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccccccc
Confidence 56777777776653 234556666655555555543 22333333332221
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH-HhCCCCchhHHH
Q 047840 331 GGGDANVWGALLSACRIYGKIEVGNRVWRKLA-EMGITDFSTHVL 374 (445)
Q Consensus 331 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~ 374 (445)
-.++...+..++..|...|+.++|.++++.+. +.+|.....|..
T Consensus 298 ~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~ 342 (349)
T 3q7a_A 298 PLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEF 342 (349)
T ss_dssp CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHH
Confidence 02455666666666666666666666666665 355554444433
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.73 E-value=1e-06 Score=76.55 Aligned_cols=164 Identities=10% Similarity=-0.034 Sum_probs=117.4
Q ss_pred hhhHHHHHHHccCChHHHHHHhhcCCC---CCh------hhHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CCC--HH
Q 047840 200 LATAVVDMYSKCGHVHSALSVFEGISN---KDA------GAWNAMISGVAMNGDAKKSLELFDRMVKSGT---QPT--ET 265 (445)
Q Consensus 200 ~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~---~p~--~~ 265 (445)
.+...+..+...|++++|...+.+..+ ... ..+..+...+...|++++|+..+++...... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344456667777888888777764322 111 1234455667788899999999998875321 122 44
Q ss_pred HHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHHHHhcCC----CCC-CH
Q 047840 266 TFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ-----LEHYACVVDLLARAGMVEEAEKFIEEKMGGL----GGG-DA 335 (445)
Q Consensus 266 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~-~~ 335 (445)
+++.+...|...|++++|...++++.......|+ ..++..+..+|...|++++|...+++.++.. ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888888899999999999999988732111222 2577888899999999999999999875432 111 26
Q ss_pred HHHHHHHHHHHHcCChHHH-HHHHHHHHH
Q 047840 336 NVWGALLSACRIYGKIEVG-NRVWRKLAE 363 (445)
Q Consensus 336 ~~~~~l~~~~~~~g~~~~a-~~~~~~~~~ 363 (445)
.+|..+...+...|++++| ...++++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 7889999999999999999 788888876
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.71 E-value=2.4e-07 Score=70.13 Aligned_cols=115 Identities=5% Similarity=-0.154 Sum_probs=92.2
Q ss_pred CCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHH
Q 047840 262 PTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGAL 341 (445)
Q Consensus 262 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 341 (445)
.+...+..+...+...|++++|...|+..... .+.+...+..+..++...|++++|...+++.++.. +.+...+..+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 83 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 83 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHH
Confidence 45677788888888889999999999888864 23456778888889999999999999999988766 5678889999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCC-----CchhHHHHHHHH
Q 047840 342 LSACRIYGKIEVGNRVWRKLAEMGIT-----DFSTHVLSYNIY 379 (445)
Q Consensus 342 ~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~l~~~~ 379 (445)
..++...|++++|...|+++++..|+ +..+...+..+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~ 126 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK 126 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998776 444444444443
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=1.4e-06 Score=76.22 Aligned_cols=217 Identities=10% Similarity=0.047 Sum_probs=160.8
Q ss_pred cCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccC-ChHHHHHHhhcCCCC---ChhhHHHHHHHHHhc-C-ChHHHH
Q 047840 176 LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCG-HVHSALSVFEGISNK---DAGAWNAMISGVAMN-G-DAKKSL 249 (445)
Q Consensus 176 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~-~-~~~~a~ 249 (445)
.+..++|+.+++.++..+ +-+..+|+.--.++...| .+++++.+++.+... +..+|+.-...+... + ++++++
T Consensus 67 ~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHH
Confidence 344567899999999886 556777887777777788 599999999987653 566777777666666 6 899999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHH--------HHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCC------
Q 047840 250 ELFDRMVKSGTQPTETTFVAVLTTCTHAKMVR--------DGLNLFENMSAVYGVEPQLEHYACVVDLLARAGM------ 315 (445)
Q Consensus 250 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------ 315 (445)
++++++.+...+ |...|+.-...+.+.+.++ ++++.++++.+. -+-|...|+.....+.+.++
T Consensus 146 ~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 146 EYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccccchH
Confidence 999999886433 7777776665555555555 899999999875 24567788887777777776
Q ss_pred -hHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCh--------------------HHHHHHHHHHHHhC------CCC
Q 047840 316 -VEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKI--------------------EVGNRVWRKLAEMG------ITD 368 (445)
Q Consensus 316 -~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~a~~~~~~~~~~~------~~~ 368 (445)
++++++.+++++... +-|...|+.+-..+.+.|+. ....+...++.... +..
T Consensus 223 ~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 301 (349)
T 3q7a_A 223 SLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPV 301 (349)
T ss_dssp HHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCC
T ss_pred HHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCc
Confidence 689999999988777 77899999888888777764 23333333333332 456
Q ss_pred chhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 047840 369 FSTHVLSYNIYKEAGWDMEANKVRKLISE 397 (445)
Q Consensus 369 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 397 (445)
+.+...++++|...|+.++|.++++.+.+
T Consensus 302 ~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 302 PLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 67788999999999999999999999863
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.70 E-value=3.3e-08 Score=85.37 Aligned_cols=193 Identities=6% Similarity=-0.066 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCCCChhhHHHHHHHHHhc
Q 047840 163 ESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMN 242 (445)
Q Consensus 163 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~ 242 (445)
...+..+...+...|++++|...|+++.+.. +.+.. .|..+..+|...
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~-------------------------------~~~~la~~~~~~ 51 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAV-------------------------------YYTNRALCYLKM 51 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHH-------------------------------HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHH-------------------------------HHHHHHHHHHHh
Confidence 3444555555555555555555555555542 22333 444444555555
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCCh-hHHHHHHHHHHhcCChHHHHH
Q 047840 243 GDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL-EHYACVVDLLARAGMVEEAEK 321 (445)
Q Consensus 243 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~ 321 (445)
|++++|+..+++..+.. +.+...+..+..++...|++++|...|+...+. .|+. ..+...+....+. .++..
T Consensus 52 ~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~---~~~~~ 124 (281)
T 2c2l_A 52 QQPEQALADCRRALELD-GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRI---AKKKR 124 (281)
T ss_dssp TCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHH---HHHHH
T ss_pred cCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHH---HHHHH
Confidence 55555555555554432 123445555555556666666666666555533 1110 0111111111111 11111
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHc-CChHHHHHHHHHHHh
Q 047840 322 FIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEA-GWDMEANKVRKLISE 397 (445)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~ 397 (445)
.. .......+.+......+... ..|+.++|++.++++.+.+|++......+...+.+. +.+++|.++|....+
T Consensus 125 ~~-~~~~~~~~~~~~i~~~l~~l--~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 125 WN-SIEERRIHQESELHSYLTRL--IAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HH-HHHHTCCCCCCHHHHHHHHH--HHHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HH-HHHHHHHhhhHHHHHHHHHH--HHHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 11 11112334444444444332 257788888888888888887666666666666665 667888888887754
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.68 E-value=3.5e-07 Score=68.26 Aligned_cols=99 Identities=11% Similarity=-0.082 Sum_probs=90.6
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 047840 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNI 378 (445)
Q Consensus 299 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 378 (445)
+...+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...++++.+..|.++..+..++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 45667788889999999999999999988765 56788999999999999999999999999999999999999999999
Q ss_pred HHHcCChHHHHHHHHHHHhc
Q 047840 379 YKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 379 ~~~~g~~~~A~~~~~~m~~~ 398 (445)
+...|++++|...+++..+.
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHhc
Confidence 99999999999999998765
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.66 E-value=3.1e-07 Score=74.75 Aligned_cols=156 Identities=11% Similarity=0.007 Sum_probs=106.0
Q ss_pred HccCChHHHHH---HhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHhhcCCcH
Q 047840 209 SKCGHVHSALS---VFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKS----GTQP-TETTFVAVLTTCTHAKMV 280 (445)
Q Consensus 209 ~~~g~~~~a~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~ 280 (445)
...|++++|.+ .+..-......++..+...+...|++++|...+++.... +..| ...++..+...+...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 34566777776 544433334556777777788888888888888776552 1122 335667777788889999
Q ss_pred HHHHHHHHHhHHhhCCCC-C----hhHHHHHHHHHHhcCChHHHHHHHHHHhcC----CCCCC--HHHHHHHHHHHHHcC
Q 047840 281 RDGLNLFENMSAVYGVEP-Q----LEHYACVVDLLARAGMVEEAEKFIEEKMGG----LGGGD--ANVWGALLSACRIYG 349 (445)
Q Consensus 281 ~~a~~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g 349 (445)
++|...+++......-.+ + ...+..+...+...|++++|...+++..+. + .+. ..++..+...+...|
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQAD-DQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHCc
Confidence 999998888775422122 2 345677788888999999999998887532 2 111 234678888899999
Q ss_pred ChHHHHHHHHHHHHhC
Q 047840 350 KIEVGNRVWRKLAEMG 365 (445)
Q Consensus 350 ~~~~a~~~~~~~~~~~ 365 (445)
++++|.+.++++.+..
T Consensus 162 ~~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 162 NLLEAQQHWLRARDIF 177 (203)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999988743
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.65 E-value=4.1e-07 Score=84.28 Aligned_cols=96 Identities=10% Similarity=0.019 Sum_probs=82.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 047840 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIY 379 (445)
Q Consensus 300 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 379 (445)
...|..+..+|.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|+..|+++++..|.+..++..++.++
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~ 395 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQ 395 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4678888999999999999999999998876 678899999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHH-HHHHHH
Q 047840 380 KEAGWDMEANK-VRKLIS 396 (445)
Q Consensus 380 ~~~g~~~~A~~-~~~~m~ 396 (445)
.+.|++++|.+ .++.|-
T Consensus 396 ~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 396 KKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 99999998875 555553
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.65 E-value=7.2e-07 Score=68.34 Aligned_cols=99 Identities=11% Similarity=-0.076 Sum_probs=89.9
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHH
Q 047840 298 PQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGD----ANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHV 373 (445)
Q Consensus 298 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 373 (445)
.+...+..+...+...|++++|...|++..+.. |+ ...+..+..++...|++++|+..++++++..|.++..+.
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 356778888899999999999999999998654 55 688999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 374 LSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 374 ~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
.++.++...|++++|...+++..+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 9999999999999999999988764
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.64 E-value=2.2e-06 Score=72.43 Aligned_cols=182 Identities=7% Similarity=-0.043 Sum_probs=120.0
Q ss_pred hcCCchHHHHHHHHHHhcCCCCC-cccHHHH-------HHHhhhcCCchhHHHHHHHHHHHhcCCCCh------------
Q 047840 7 QANFPKLSVFCYLDMLDMGFEPN-NYTFPPL-------IKACVILGPLENFGMFVHAHVVKFGFGEDP------------ 66 (445)
Q Consensus 7 ~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l-------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------------ 66 (445)
+.+++..|.+.|.+..+.. |+ ...|..+ ...+...++.. .+...+... .++.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~d--P~~~Daw~g~~a~g~~~~~~L~~~~r~~-~a~~~~~~~--l~l~p~~l~a~~~~~g~y~ 92 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD--ESACDAWIGRIRCGDTDRVTLFRAWYSR-RNFGQLSGS--VQISMSTLNARIAIGGLYG 92 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCCCHHHHHHHHHTG-GGTTHHHHT--TTCCGGGGCCEEECCTTTC
T ss_pred cCCCHHHHHHHHHHHHHhC--hhhhHHHHhHHHccCCcHHHHHHHHHHH-HHHHHHHHH--hcCChhhhhhhhccCCccc
Confidence 5789999999999998854 54 3456555 23333333333 233232222 2222221
Q ss_pred ----------hhHHHHHHHHHhcCCHHHHHHHhccCCC--CChhhHHHHHHHHHcCCChHHHHHHhccCCCC-C----hh
Q 047840 67 ----------FVVSSLLEFYSLVHKMGTARALFDKSPD--RDVVTWTTMVDGYGKMGDFENARELFEKMPER-N----AV 129 (445)
Q Consensus 67 ----------~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~----~~ 129 (445)
...-.+...+...|++++|.++|+.... |+......+...+.+.+++++|+..|+..... + ..
T Consensus 93 ~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 93 DITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp CCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred ccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 1233456677788899999999888764 33235555666778888888888888866542 2 23
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCChhHHHHHHHHHHHcC
Q 047840 130 SWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPN--ESGLVSVLTACAHLGAITQGLWVHSYAKRYH 193 (445)
Q Consensus 130 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 193 (445)
.+..+..++...|++++|+..|++.......|. .........++.+.|+.++|...|+++....
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 567778888888888888888888775433243 3456667777888888888888888888774
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.63 E-value=3.6e-07 Score=68.23 Aligned_cols=95 Identities=9% Similarity=-0.102 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-------chhHHH
Q 047840 302 HYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITD-------FSTHVL 374 (445)
Q Consensus 302 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-------~~~~~~ 374 (445)
.+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++++.+..|.+ +.++..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34444455555555555555555554433 3344555555555555555555555555555544433 444555
Q ss_pred HHHHHHHcCChHHHHHHHHHHHh
Q 047840 375 SYNIYKEAGWDMEANKVRKLISE 397 (445)
Q Consensus 375 l~~~~~~~g~~~~A~~~~~~m~~ 397 (445)
++.++...|++++|.+.+++..+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH
Confidence 55555555555555555555544
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.60 E-value=6.1e-07 Score=67.00 Aligned_cols=90 Identities=11% Similarity=-0.013 Sum_probs=46.4
Q ss_pred HHHHHhcCChHHHHHHHHHHhcCCCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---chhHHHHHHHHH
Q 047840 307 VDLLARAGMVEEAEKFIEEKMGGLGGGDA---NVWGALLSACRIYGKIEVGNRVWRKLAEMGITD---FSTHVLSYNIYK 380 (445)
Q Consensus 307 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~ 380 (445)
...+...|++++|...|+.+.+.. +.+. ..+..+..++...|++++|...++++++..|++ +.++..++.++.
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 344445555555555555554432 1222 344445555555555555555555555555554 444555555555
Q ss_pred HcCChHHHHHHHHHHHh
Q 047840 381 EAGWDMEANKVRKLISE 397 (445)
Q Consensus 381 ~~g~~~~A~~~~~~m~~ 397 (445)
..|++++|...++++.+
T Consensus 88 ~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555555543
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.59 E-value=2.3e-07 Score=86.39 Aligned_cols=121 Identities=8% Similarity=-0.077 Sum_probs=101.5
Q ss_pred HHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcC
Q 047840 270 VLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYG 349 (445)
Q Consensus 270 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 349 (445)
+...+.+.|++++|...++++.+. .+.+...+..+..+|.+.|++++|++.+++.++.. +.+...+..+..+|...|
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALG 88 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 334567789999999999999865 23357888899999999999999999999998876 667889999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHH--HHHcCChHHHHHHHH
Q 047840 350 KIEVGNRVWRKLAEMGITDFSTHVLSYNI--YKEAGWDMEANKVRK 393 (445)
Q Consensus 350 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 393 (445)
++++|++.++++++..|.+..++..++.+ +.+.|++++|.+.++
T Consensus 89 ~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 89 KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp CHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999988888888887 888899999999887
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.59 E-value=5e-07 Score=65.33 Aligned_cols=102 Identities=15% Similarity=0.070 Sum_probs=72.4
Q ss_pred HHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCC--CHHHHHHHH
Q 047840 265 TTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGG--DANVWGALL 342 (445)
Q Consensus 265 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~ 342 (445)
..+..+...+...|++++|...++++.+. .+.+...+..+..++...|++++|...+++..+.. +. +...+..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 44555666667777777777777777653 13345666777777777888888888887777654 44 577777778
Q ss_pred HHHHHc-CChHHHHHHHHHHHHhCCCCc
Q 047840 343 SACRIY-GKIEVGNRVWRKLAEMGITDF 369 (445)
Q Consensus 343 ~~~~~~-g~~~~a~~~~~~~~~~~~~~~ 369 (445)
.++... |++++|.+.++++....|.++
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 888888 888888888888887777643
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.59 E-value=2e-06 Score=64.06 Aligned_cols=104 Identities=13% Similarity=-0.014 Sum_probs=78.3
Q ss_pred HHHHHhhcCCcHHHHHHHHHHhHHhhCCCCC-h---hHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCC---HHHHHHH
Q 047840 269 AVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ-L---EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGD---ANVWGAL 341 (445)
Q Consensus 269 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l 341 (445)
.+...+...|++++|...|+.+... .|+ . ..+..+..++...|++++|...|+++.+.. +.+ ...+..+
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~l 82 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHH
Confidence 3445566778888888888888764 233 2 366677788888899999999888887654 334 6678888
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHH
Q 047840 342 LSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY 376 (445)
Q Consensus 342 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 376 (445)
..++...|++++|...|+++++..|+++.......
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~ 117 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQE 117 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 88899999999999999999998888765544443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=2.9e-05 Score=67.50 Aligned_cols=194 Identities=8% Similarity=-0.053 Sum_probs=94.5
Q ss_pred hhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccC--ChHHHHHHhhcCCC---CChhhHHHHHHHHHhcCC-hHHHHHHH
Q 047840 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCG--HVHSALSVFEGISN---KDAGAWNAMISGVAMNGD-AKKSLELF 252 (445)
Q Consensus 179 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~-~~~a~~~~ 252 (445)
+++++.+++.+.... |-+..+|+.-.-++.+.| .++++..+++++.+ .|..+|+.-.-.+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 455556666665543 344555554444444444 35566665555543 244455554445555555 46666666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHhhcC--------------CcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhc-----
Q 047840 253 DRMVKSGTQPTETTFVAVLTTCTHA--------------KMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARA----- 313 (445)
Q Consensus 253 ~~m~~~~~~p~~~~~~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 313 (445)
+++.+..+. |...|+.....+.+. +.++++++.+...... .+-|...|+-+-..+.+.
T Consensus 169 ~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 169 DSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCccc
Confidence 666665432 444554443333222 3355566666665543 133344454333333333
Q ss_pred ------CChHHHHHHHHHHhcCCCCCCHHHHHHHHHH---HHHcCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 047840 314 ------GMVEEAEKFIEEKMGGLGGGDANVWGALLSA---CRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYN 377 (445)
Q Consensus 314 ------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 377 (445)
+.++++++.++++.+.. +.+...+..++.. ....|..+++...+.++++.+|....-|..+..
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~-pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~ 317 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELE-PENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 317 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhC-cccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 23556666666665443 2222222222111 112345556666666666666665555554433
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=1.3e-05 Score=69.77 Aligned_cols=181 Identities=10% Similarity=0.070 Sum_probs=134.1
Q ss_pred hHHHHHHhhcCCC---CChhhHHHHHHHHHhcC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCc-HHHHHHHH
Q 047840 214 VHSALSVFEGISN---KDAGAWNAMISGVAMNG--DAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKM-VRDGLNLF 287 (445)
Q Consensus 214 ~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~--~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~-~~~a~~~~ 287 (445)
++++..+++.+.. .+..+|+.-...+...+ .+++++.+++++.+...+ |...|+.-...+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 4666777766543 46678887777777777 489999999999987544 77788777777777787 58999999
Q ss_pred HHhHHhhCCCCChhHHHHHHHHHHhc--------------CChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHc-----
Q 047840 288 ENMSAVYGVEPQLEHYACVVDLLARA--------------GMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIY----- 348 (445)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 348 (445)
+.+... -+.|...|+.....+.+. +.++++++.+...+... |-|...|+.+-..+...
T Consensus 169 ~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 169 DSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHH--CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHH--CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccc
Confidence 999875 245677777666655554 45788999999988777 77888888776666554
Q ss_pred ------CChHHHHHHHHHHHHhCCCCchhHHHHHHHH---HHcCChHHHHHHHHHHHhc
Q 047840 349 ------GKIEVGNRVWRKLAEMGITDFSTHVLSYNIY---KEAGWDMEANKVRKLISET 398 (445)
Q Consensus 349 ------g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~m~~~ 398 (445)
+.++++++.++++++..|++..++..++... ...|..+++...+.++.+.
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 3578999999999999998865554444322 2357788888888888763
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.58 E-value=4.6e-07 Score=70.90 Aligned_cols=62 Identities=11% Similarity=-0.023 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 047840 336 NVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISE 397 (445)
Q Consensus 336 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 397 (445)
..|..+..+|...|++++|+..++++++.+|.++.++..++.+|...|++++|...+++..+
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 34555555555555555555555555555555555555555555555555555555555443
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.58 E-value=1.3e-06 Score=77.38 Aligned_cols=149 Identities=7% Similarity=-0.018 Sum_probs=117.5
Q ss_pred CChHHHHHHhhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--------------HHHHHHHHHHh
Q 047840 212 GHVHSALSVFEGISN---KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPT--------------ETTFVAVLTTC 274 (445)
Q Consensus 212 g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--------------~~~~~~l~~~~ 274 (445)
+++++|...|+.... .+...+..+...+.+.|++++|+..|++......... ...|..+..++
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 206 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCH 206 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 344445544444332 1455777888888999999999999999887643321 47888899999
Q ss_pred hcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHH
Q 047840 275 THAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVG 354 (445)
Q Consensus 275 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 354 (445)
.+.|++++|...++++.+. .+.+...+..+..+|...|++++|...|++.++.. +.+...+..+..++...|+.++|
T Consensus 207 ~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 207 LKLQAFSAAIESCNKALEL--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999975 23467888899999999999999999999998776 66788999999999999999888
Q ss_pred -HHHHHHHHH
Q 047840 355 -NRVWRKLAE 363 (445)
Q Consensus 355 -~~~~~~~~~ 363 (445)
...+++|..
T Consensus 284 ~~~~~~~~~~ 293 (336)
T 1p5q_A 284 EKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 456676654
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.58 E-value=1.1e-07 Score=69.88 Aligned_cols=85 Identities=15% Similarity=0.087 Sum_probs=44.7
Q ss_pred cCChHHHHHHHHHHhcCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHH
Q 047840 313 AGMVEEAEKFIEEKMGGL--GGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANK 390 (445)
Q Consensus 313 ~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 390 (445)
.|++++|+..|++.++.+ -+.+...+..+..++...|++++|+..|+++++..|.++.++..++.++...|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 345555555555555432 122334455555555555666666666666655555555555555555666666666655
Q ss_pred HHHHHHh
Q 047840 391 VRKLISE 397 (445)
Q Consensus 391 ~~~~m~~ 397 (445)
.+++..+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555543
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.57 E-value=7.6e-07 Score=67.86 Aligned_cols=96 Identities=16% Similarity=-0.076 Sum_probs=71.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhcCCCC------CC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHHh-------
Q 047840 303 YACVVDLLARAGMVEEAEKFIEEKMGGLGG------GD-----ANVWGALLSACRIYGKIEVGNRVWRKLAEM------- 364 (445)
Q Consensus 303 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------- 364 (445)
+......+...|++++|+..|++.++.... .+ ...|..+..++...|++++|+..++++++.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 344445555666666666666665543311 02 237888888889999999999999999988
Q ss_pred CCCCchhH----HHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 365 GITDFSTH----VLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 365 ~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
+|++...| ...+.++...|++++|+..|++..+.
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 89888888 88999999999999999988887653
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.57 E-value=5.2e-07 Score=67.35 Aligned_cols=113 Identities=8% Similarity=-0.025 Sum_probs=72.8
Q ss_pred HHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCC--CCC----HHHH
Q 047840 265 TTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLG--GGD----ANVW 338 (445)
Q Consensus 265 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~----~~~~ 338 (445)
..+..+...+...|++++|...++..... .+.+...+..+...+...|++++|...+++..+... .++ ..++
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 34555556666667777777777776653 133455666667777777777777777777655431 112 5667
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 047840 339 GALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYK 380 (445)
Q Consensus 339 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 380 (445)
..+..++...|++++|.+.|+++.+..| ++.....+..+..
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 7777778888888888888888887776 4555555544433
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.8e-07 Score=73.24 Aligned_cols=80 Identities=13% Similarity=-0.033 Sum_probs=68.2
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCc-hhHHHHHH
Q 047840 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDF-STHVLSYN 377 (445)
Q Consensus 299 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~l~~ 377 (445)
+...|..+..+|.+.|++++|+..+++.++.. +.+...|..+..++...|++++|...|+++++..|.++ .+...+..
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~ 140 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKI 140 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 35678888999999999999999999998876 67889999999999999999999999999999999877 44444444
Q ss_pred HH
Q 047840 378 IY 379 (445)
Q Consensus 378 ~~ 379 (445)
+.
T Consensus 141 ~~ 142 (162)
T 3rkv_A 141 VT 142 (162)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.54 E-value=2.6e-07 Score=75.05 Aligned_cols=165 Identities=6% Similarity=-0.032 Sum_probs=80.4
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCC---CChhhHHHHHHHHHhcCC
Q 047840 168 SVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN---KDAGAWNAMISGVAMNGD 244 (445)
Q Consensus 168 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~ 244 (445)
..+......|+++.+...++...... ......+..+...+.+.|++++|...|++... .+.......
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~--------- 78 (198)
T 2fbn_A 9 HHSSGRENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQI--------- 78 (198)
T ss_dssp -------------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHH---------
T ss_pred chhhhhhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhh---------
Confidence 34445556677777776665433221 22345677788899999999999999987643 122000000
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 047840 245 AKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIE 324 (445)
Q Consensus 245 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 324 (445)
...- -.. .....+..+..++...|++++|...++..... .+.+...+..+..+|...|++++|...|+
T Consensus 79 ~~~~---~~~-------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~ 146 (198)
T 2fbn_A 79 LLDK---KKN-------IEISCNLNLATCYNKNKDYPKAIDHASKVLKI--DKNNVKALYKLGVANMYFGFLEEAKENLY 146 (198)
T ss_dssp HHHH---HHH-------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHH---HHH-------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 0000 000 01234444555555566666666666665543 12334555556666666666666666666
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHHcCChHHHH
Q 047840 325 EKMGGLGGGDANVWGALLSACRIYGKIEVGN 355 (445)
Q Consensus 325 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 355 (445)
+..+.. +.+...+..+..++...++.+++.
T Consensus 147 ~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 147 KAASLN-PNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHS-TTCHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 655444 344555555555555555444444
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.52 E-value=1.4e-06 Score=78.13 Aligned_cols=91 Identities=8% Similarity=-0.078 Sum_probs=83.0
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 047840 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNI 378 (445)
Q Consensus 299 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 378 (445)
+...|..+..+|.+.|++++|+..+++.++.. +.+...+..+..+|...|++++|+..|+++++..|.+..++..+..+
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~ 350 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKV 350 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 45678888999999999999999999999876 56789999999999999999999999999999999999999999999
Q ss_pred HHHcCChHHHHH
Q 047840 379 YKEAGWDMEANK 390 (445)
Q Consensus 379 ~~~~g~~~~A~~ 390 (445)
+...++.+++.+
T Consensus 351 ~~~~~~~~~a~k 362 (370)
T 1ihg_A 351 KQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999998888776
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.52 E-value=6.7e-07 Score=66.01 Aligned_cols=99 Identities=10% Similarity=-0.141 Sum_probs=69.7
Q ss_pred HHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 047840 267 FVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACR 346 (445)
Q Consensus 267 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 346 (445)
+..+...+.+.|++++|...++.+.+. -+.+...|..+..++...|++++|+..|++.++.. +.+...+..+..++.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 334455666778888888888877754 13356677777777888888888888888877665 556777788888888
Q ss_pred HcCChHHHHHHHHHHHHhCCCC
Q 047840 347 IYGKIEVGNRVWRKLAEMGITD 368 (445)
Q Consensus 347 ~~g~~~~a~~~~~~~~~~~~~~ 368 (445)
..|++++|+..++++++..|.+
T Consensus 97 ~~g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-----
T ss_pred HcCCHHHHHHHHHHHHHhCcCC
Confidence 8888888888888888777764
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.52 E-value=1.1e-06 Score=75.64 Aligned_cols=108 Identities=5% Similarity=-0.156 Sum_probs=91.4
Q ss_pred CHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 047840 263 TETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALL 342 (445)
Q Consensus 263 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 342 (445)
+...+..+...+...|++++|...|+.+... .+.+...|..+..+|.+.|++++|...+++.++.. +.+...+..+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 5567778888899999999999999999865 13367788889999999999999999999998776 66788899999
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCCchhHH
Q 047840 343 SACRIYGKIEVGNRVWRKLAEMGITDFSTHV 373 (445)
Q Consensus 343 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 373 (445)
.++...|++++|...|+++.+..|+++..+.
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 110 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFG 110 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchhhHH
Confidence 9999999999999999999998887544333
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.49 E-value=1.9e-07 Score=68.53 Aligned_cols=95 Identities=14% Similarity=0.106 Sum_probs=73.7
Q ss_pred cCCcHHHHHHHHHHhHHhhC--CCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHH
Q 047840 276 HAKMVRDGLNLFENMSAVYG--VEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEV 353 (445)
Q Consensus 276 ~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 353 (445)
..|++++|+..|++..+. + -+.+...+..+..+|...|++++|...|++.++.. +.+..++..+..++...|++++
T Consensus 2 ~~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp -----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred CCCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHH
Confidence 357788888888888743 1 12345677788888999999999999999988776 6678889999999999999999
Q ss_pred HHHHHHHHHHhCCCCchhH
Q 047840 354 GNRVWRKLAEMGITDFSTH 372 (445)
Q Consensus 354 a~~~~~~~~~~~~~~~~~~ 372 (445)
|+..++++++..|.++...
T Consensus 80 A~~~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 80 GVELLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHHHhCCCcHHHH
Confidence 9999999999988876544
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.49 E-value=5.2e-07 Score=80.01 Aligned_cols=149 Identities=9% Similarity=-0.036 Sum_probs=84.9
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHH
Q 047840 229 AGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVD 308 (445)
Q Consensus 229 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 308 (445)
...+..+...+.+.|++++|+..|++.... .|+... +...++.+++...+ . ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~--------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K--------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H--------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H--------HHHHHHHHH
Confidence 345666777777888888888888887764 344331 22334444433222 1 136778888
Q ss_pred HHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHH-HHcCChHH
Q 047840 309 LLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIY-KEAGWDME 387 (445)
Q Consensus 309 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~ 387 (445)
+|.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|+..|+++++..|.+..++..+..+. ...+..++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988766 567889999999999999999999999999999999888888887773 44566777
Q ss_pred HHHHHHHHHhc
Q 047840 388 ANKVRKLISET 398 (445)
Q Consensus 388 A~~~~~~m~~~ 398 (445)
+...+++|...
T Consensus 318 a~~~~~~~l~~ 328 (338)
T 2if4_A 318 QKEMYKGIFKG 328 (338)
T ss_dssp -----------
T ss_pred HHHHHHHhhCC
Confidence 77888877543
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.44 E-value=2.2e-06 Score=66.60 Aligned_cols=133 Identities=14% Similarity=-0.015 Sum_probs=89.5
Q ss_pred HHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHHHhcCCC-CCC----HH
Q 047840 266 TFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ----LEHYACVVDLLARAGMVEEAEKFIEEKMGGLG-GGD----AN 336 (445)
Q Consensus 266 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~ 336 (445)
++..+...+...|++++|...+++......-.++ ...+..+...+...|++++|...+++..+... .++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4455555566666777777666665543111111 13566677778888888888888877654210 111 45
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCC------CchhHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 337 VWGALLSACRIYGKIEVGNRVWRKLAEMGIT------DFSTHVLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 337 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
++..+...+...|++++|.+.++++++..+. ...++..++.++...|++++|.+.+++..+.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 6777888888899999999999888874321 2446778888999999999999988877643
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.40 E-value=1.1e-05 Score=74.18 Aligned_cols=213 Identities=6% Similarity=-0.166 Sum_probs=109.1
Q ss_pred HHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCChHHH
Q 047840 169 VLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKS 248 (445)
Q Consensus 169 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 248 (445)
-...+.+.|++++|.+.|..+.+....... ............+..+ .++..+...|...|++++|
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~--------------~al~~l~~~y~~~~~~~~a 74 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSS-AAAGASVDDKRRNEQE--------------TSILELGQLYVTMGAKDKL 74 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSS-BSSSSSBCSHHHHHHH--------------HHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccch-hHHHHHHHHHHhhhHH--------------HHHHHHHHHHHHCCCHHHH
Confidence 345567778888888888887775422111 0000000000000000 1234556666666666666
Q ss_pred HHHHHHHHHc-CCCCCH----HHHHHHHHHhhcCCcHHHHHHHHHHhHHhh---CCCCC-hhHHHHHHHHHHhcCChHHH
Q 047840 249 LELFDRMVKS-GTQPTE----TTFVAVLTTCTHAKMVRDGLNLFENMSAVY---GVEPQ-LEHYACVVDLLARAGMVEEA 319 (445)
Q Consensus 249 ~~~~~~m~~~-~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~-~~~~~~l~~~~~~~g~~~~A 319 (445)
.+.+.++... +..++. .+.+.+-..+...|+++.+..+++...... +..+. ..++..+...|...|++++|
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 154 (434)
T 4b4t_Q 75 REFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDS 154 (434)
T ss_dssp HHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHH
Confidence 6666655432 111111 112222333445566777766666554321 11111 34555666777777777777
Q ss_pred HHHHHHHhcC----CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC---CC----chhHHHHHHHHHHcCChHH
Q 047840 320 EKFIEEKMGG----LGGG-DANVWGALLSACRIYGKIEVGNRVWRKLAEMGI---TD----FSTHVLSYNIYKEAGWDME 387 (445)
Q Consensus 320 ~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~----~~~~~~l~~~~~~~g~~~~ 387 (445)
..+++++... +-.+ ...++..++..|...|++++|..+++++....+ .+ ...+..++..+...|++++
T Consensus 155 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~ 234 (434)
T 4b4t_Q 155 LALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKT 234 (434)
T ss_dssp HHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHH
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHH
Confidence 7776665322 1011 134566667777777777777777777665322 11 1234455566666677777
Q ss_pred HHHHHHHHH
Q 047840 388 ANKVRKLIS 396 (445)
Q Consensus 388 A~~~~~~m~ 396 (445)
|...+....
T Consensus 235 A~~~~~~a~ 243 (434)
T 4b4t_Q 235 AFSYFFESF 243 (434)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 766555443
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.39 E-value=1.6e-06 Score=66.06 Aligned_cols=103 Identities=12% Similarity=-0.020 Sum_probs=77.0
Q ss_pred HHHHHhhcCCcHHHHHHHHHHhHHhhCCCCC-------------hhHHHHHHHHHHhcCChHHHHHHHHHHhcC------
Q 047840 269 AVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ-------------LEHYACVVDLLARAGMVEEAEKFIEEKMGG------ 329 (445)
Q Consensus 269 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------ 329 (445)
.....+.+.|++++|...|++..+. .|+ ...|..+..++.+.|++++|+..+++.++.
T Consensus 16 ~~G~~l~~~g~~eeAi~~Y~kAL~l---~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 16 SDAQRQLVAGEYDEAAANCRRAMEI---SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH---HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhh---CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 3344455556666666666665543 222 237888888899999999999999888765
Q ss_pred -CCCCCHHHH----HHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHH
Q 047840 330 -LGGGDANVW----GALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLS 375 (445)
Q Consensus 330 -~~~~~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 375 (445)
. +.+...| .....++...|++++|+..|++++++.|.+......+
T Consensus 93 ~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~ 142 (159)
T 2hr2_A 93 LN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGK 142 (159)
T ss_dssp TT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTH
T ss_pred CC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 5 4456788 9999999999999999999999999999876655443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.37 E-value=4e-06 Score=57.94 Aligned_cols=83 Identities=16% Similarity=0.157 Sum_probs=71.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 047840 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIY 379 (445)
Q Consensus 300 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 379 (445)
...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...++++.+..|.++.++..++.++
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 5567778888889999999999999887765 567888899999999999999999999999999999888888888887
Q ss_pred HHcC
Q 047840 380 KEAG 383 (445)
Q Consensus 380 ~~~g 383 (445)
.+.|
T Consensus 88 ~~~g 91 (91)
T 1na3_A 88 QKQG 91 (91)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 7654
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.37 E-value=3.1e-06 Score=61.67 Aligned_cols=79 Identities=8% Similarity=-0.114 Sum_probs=49.7
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 047840 318 EAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISE 397 (445)
Q Consensus 318 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 397 (445)
+|...|++..+.. +.+...+..+...+...|++++|+..|+++++..|.++..+..++.+|...|++++|...+++..+
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455555555544 445566666666666666666666666666666666666666666666666666666666665544
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.37 E-value=2.9e-06 Score=78.97 Aligned_cols=115 Identities=7% Similarity=-0.067 Sum_probs=47.6
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHH
Q 047840 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAE 320 (445)
Q Consensus 241 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 320 (445)
+.|++++|++.|++..+.. +.+...+..+..++.+.|++++|...++++.+. -+.+...+..+..+|...|++++|.
T Consensus 18 ~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~~eA~ 94 (477)
T 1wao_1 18 KAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKFRAAL 94 (477)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 3444444444444444431 113444444444444555555555555544432 1222344444444555555555555
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHH--HHHcCChHHHHHHHH
Q 047840 321 KFIEEKMGGLGGGDANVWGALLSA--CRIYGKIEVGNRVWR 359 (445)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 359 (445)
+.|++..+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 95 ~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 95 RDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 5555444332 2222233333333 444455555555544
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.37 E-value=1.1e-06 Score=63.60 Aligned_cols=94 Identities=11% Similarity=-0.059 Sum_probs=77.7
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------chhH
Q 047840 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITD------FSTH 372 (445)
Q Consensus 299 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~ 372 (445)
+...+..+...+...|++++|...|++.++.. +.+...+..+..++...|++++|++.++++++..|.+ ...+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 45667788888999999999999999988766 6678889999999999999999999999999999987 6667
Q ss_pred HHHHHHHHHcCChHHHHHHHH
Q 047840 373 VLSYNIYKEAGWDMEANKVRK 393 (445)
Q Consensus 373 ~~l~~~~~~~g~~~~A~~~~~ 393 (445)
..++.++...|++++|.+.++
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHhHhhhHhHHH
Confidence 777777777777666655443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.35 E-value=1.8e-05 Score=72.75 Aligned_cols=193 Identities=9% Similarity=0.028 Sum_probs=110.6
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCCCCCH----------------HHHHHHHHHHHccCChhHHHHHHHHHHHcCC-CCc
Q 047840 135 MAAYSRISDFKEVLSLFRQMQEVGMKPNE----------------SGLVSVLTACAHLGAITQGLWVHSYAKRYHL-EKN 197 (445)
Q Consensus 135 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~ 197 (445)
...+.+.|++++|++.|....+....... ..+..+...|...|++++|..++..+.+.-. .++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 56678899999999999999875422211 2366677788888888888888877665311 111
Q ss_pred h----hhhhHHHHHHHccCChHHHHHHhhcCCC-----C----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHc--CC--
Q 047840 198 V----ILATAVVDMYSKCGHVHSALSVFEGISN-----K----DAGAWNAMISGVAMNGDAKKSLELFDRMVKS--GT-- 260 (445)
Q Consensus 198 ~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~-- 260 (445)
. .+.+.+...+...|+++.|..++..... . -..++..+...|...|++++|..+++++... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 1223333444455667777666654321 0 1234555666666777777777766665432 11
Q ss_pred CC-CHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHHHHh
Q 047840 261 QP-TETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ-----LEHYACVVDLLARAGMVEEAEKFIEEKM 327 (445)
Q Consensus 261 ~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 327 (445)
.| ...++..++..|...|++++|..+++.......-.++ ...+..+...+...|++++|...|.+..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 11 1234555566666667777776666665532111111 1233444445555666666666666553
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.35 E-value=1.4e-05 Score=59.44 Aligned_cols=96 Identities=8% Similarity=0.025 Sum_probs=42.9
Q ss_pred HHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCC--CCCC----HHHHHHHH
Q 047840 269 AVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGL--GGGD----ANVWGALL 342 (445)
Q Consensus 269 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~----~~~~~~l~ 342 (445)
.+...+.+.|++++|+..|++..+. .+.+...|..+..+|...|++++|++.+++.++.. ..++ ..+|..+.
T Consensus 13 ~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg 90 (127)
T 4gcn_A 13 DLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAG 90 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 3344444444444444444444432 01223344444444444444444444444443221 0011 12444555
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCC
Q 047840 343 SACRIYGKIEVGNRVWRKLAEMGI 366 (445)
Q Consensus 343 ~~~~~~g~~~~a~~~~~~~~~~~~ 366 (445)
.++...|++++|++.|++.++..|
T Consensus 91 ~~~~~~~~~~~A~~~~~kal~~~~ 114 (127)
T 4gcn_A 91 NAFQKQNDLSLAVQWFHRSLSEFR 114 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCc
Confidence 555555666666666665555444
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=2e-05 Score=74.80 Aligned_cols=169 Identities=12% Similarity=0.007 Sum_probs=133.3
Q ss_pred HHHHHHhhcCCC---CChhhHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCC--c
Q 047840 215 HSALSVFEGISN---KDAGAWNAMISGVAMNGD----------AKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAK--M 279 (445)
Q Consensus 215 ~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~--~ 279 (445)
++|.+.++++.. .+..+|+.--..+...|+ ++++++.++++.+...+ +..+|..-...+.+.+ +
T Consensus 46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~~~ 124 (567)
T 1dce_A 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPN 124 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSCC
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccccc
Confidence 455666555543 234455555555555555 88999999999887544 7788888888888888 7
Q ss_pred HHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcC-ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHc----------
Q 047840 280 VRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAG-MVEEAEKFIEEKMGGLGGGDANVWGALLSACRIY---------- 348 (445)
Q Consensus 280 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------- 348 (445)
++++.+.++++.+. -+-+...|+.-.-++.+.| .++++++.++++++.. +-|...|+.....+...
T Consensus 125 ~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 125 WARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred HHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccccccccc
Confidence 79999999999975 2446778887777778888 8999999999999887 67889999988888764
Q ss_pred ----CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHH
Q 047840 349 ----GKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDME 387 (445)
Q Consensus 349 ----g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 387 (445)
+.++++++.+++++..+|.+..+|..+...+.+.++.++
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 457999999999999999999999999999999888554
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.29 E-value=6.4e-06 Score=63.87 Aligned_cols=136 Identities=7% Similarity=0.028 Sum_probs=94.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCC----hh
Q 047840 231 AWNAMISGVAMNGDAKKSLELFDRMVKSGTQ-PT----ETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ----LE 301 (445)
Q Consensus 231 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~ 301 (445)
++..+...+...|++++|+..+++..+.... ++ ..++..+...+...|++++|...++.......-.++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4556666777777888887777776543110 11 135666777788888888888888877653211112 34
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhcC----CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 047840 302 HYACVVDLLARAGMVEEAEKFIEEKMGG----LGG-GDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366 (445)
Q Consensus 302 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 366 (445)
.+..+...+...|++++|...+++..+. +.+ ....++..+...+...|++++|.+.+++.++...
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 5667778888999999999988876543 211 1235677888899999999999999999887543
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.27 E-value=7e-06 Score=75.99 Aligned_cols=132 Identities=14% Similarity=0.099 Sum_probs=102.4
Q ss_pred HhhcCCcHHHHHHHHHHhHHhhC--CCC----ChhHHHHHHHHHHhcCChHHHHHHHHHHhcC-----C-CCCC-HHHHH
Q 047840 273 TCTHAKMVRDGLNLFENMSAVYG--VEP----QLEHYACVVDLLARAGMVEEAEKFIEEKMGG-----L-GGGD-ANVWG 339 (445)
Q Consensus 273 ~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~~~-~~~~~ 339 (445)
.+...|++++|..++++..+... +.| ...+++.|..+|...|++++|+.++++.++. | -.|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 35678999999999988776421 112 2567889999999999999999998876432 2 1233 35789
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHH-----hCCCCchhH---HHHHHHHHHcCChHHHHHHHHHHHhcCCccCC
Q 047840 340 ALLSACRIYGKIEVGNRVWRKLAE-----MGITDFSTH---VLSYNIYKEAGWDMEANKVRKLISETGMKKKP 404 (445)
Q Consensus 340 ~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 404 (445)
.|...|...|++++|+.+++++++ .||+++.+- ..+..++...|++++|+.++.++++...+..|
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~~~ 470 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNNQP 470 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999987 688876554 46778899999999999999999876544433
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.24 E-value=4.1e-06 Score=74.21 Aligned_cols=154 Identities=7% Similarity=-0.048 Sum_probs=82.6
Q ss_pred hhhhhHHHHHHHccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcC
Q 047840 198 VILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHA 277 (445)
Q Consensus 198 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 277 (445)
...+..+...+.+.|++++|...|++....+.... .+...++.+++...+. ...|..+..+|.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 44567788889999999999999987654222111 1223333444433221 13677788888999
Q ss_pred CcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHH-HHHcCChHHHHH
Q 047840 278 KMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSA-CRIYGKIEVGNR 356 (445)
Q Consensus 278 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~ 356 (445)
|++++|...++..... .+.+...|..+..+|...|++++|...|++.++.. +.+...+..+... ....+..+++..
T Consensus 244 g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp TCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999864 23457788889999999999999999999987665 4455566666655 334567788889
Q ss_pred HHHHHHHhCCCCc
Q 047840 357 VWRKLAEMGITDF 369 (445)
Q Consensus 357 ~~~~~~~~~~~~~ 369 (445)
.|+++....|.++
T Consensus 321 ~~~~~l~~~p~~~ 333 (338)
T 2if4_A 321 MYKGIFKGKDEGG 333 (338)
T ss_dssp -------------
T ss_pred HHHHhhCCCCCCC
Confidence 9999998887654
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.22 E-value=1.1e-05 Score=57.00 Aligned_cols=66 Identities=14% Similarity=-0.044 Sum_probs=48.3
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 047840 332 GGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISE 397 (445)
Q Consensus 332 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 397 (445)
+.+...+..+..++...|++++|+..|+++++.+|.++.++..++.+|...|++++|.+.+++..+
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 345666777777777777777777777777777777777777777777777777777777776654
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.17 E-value=9.3e-06 Score=72.77 Aligned_cols=94 Identities=7% Similarity=-0.182 Sum_probs=74.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhc----------------CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 047840 304 ACVVDLLARAGMVEEAEKFIEEKMG----------------GLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT 367 (445)
Q Consensus 304 ~~l~~~~~~~g~~~~A~~~~~~~~~----------------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 367 (445)
..+...+.+.|++++|+..|++.++ .. +.+..+|..+..+|.+.|++++|+..++++++..|.
T Consensus 227 ~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~-~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 305 (370)
T 1ihg_A 227 KNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQ-PVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS 305 (370)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHH-HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch
Confidence 3344444555555555555554443 22 335678899999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 368 DFSTHVLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 368 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
++.++..++.+|...|++++|.+.+++..+.
T Consensus 306 ~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 306 NTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999998765
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.15 E-value=3.6e-06 Score=64.02 Aligned_cols=87 Identities=9% Similarity=-0.102 Sum_probs=74.5
Q ss_pred HhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCh----------HHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 047840 311 ARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKI----------EVGNRVWRKLAEMGITDFSTHVLSYNIYK 380 (445)
Q Consensus 311 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 380 (445)
.+.+.+++|.+.++..++.. +.+...|..+..++...+++ ++|+..|+++++++|++..+|..++.+|.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 35567788888888888777 67888888888888877664 59999999999999999999999999999
Q ss_pred HcC-----------ChHHHHHHHHHHHhc
Q 047840 381 EAG-----------WDMEANKVRKLISET 398 (445)
Q Consensus 381 ~~g-----------~~~~A~~~~~~m~~~ 398 (445)
..| ++++|.+.|++..+.
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 875 899999999998764
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.14 E-value=3.5e-05 Score=71.34 Aligned_cols=148 Identities=7% Similarity=-0.028 Sum_probs=111.0
Q ss_pred CChHHHHHHhhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--------------HHHHHHHHHHh
Q 047840 212 GHVHSALSVFEGISN---KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPT--------------ETTFVAVLTTC 274 (445)
Q Consensus 212 g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--------------~~~~~~l~~~~ 274 (445)
+++++|...|+.... .....|..+...+.+.|++++|+..|++..+...... ...|..+..+|
T Consensus 248 ~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 327 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCY 327 (457)
T ss_dssp EEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 344445444443332 1345677888899999999999999999887532211 57888889999
Q ss_pred hcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHH
Q 047840 275 THAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVG 354 (445)
Q Consensus 275 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 354 (445)
.+.|++++|+..++++... .+.+...|..+..+|...|++++|...|+++++.. +.+...+..+..++...++.+++
T Consensus 328 ~~~g~~~~A~~~~~~al~~--~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 328 LKLREYTKAVECCDKALGL--DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999975 23457888899999999999999999999998776 55677888899999888888777
Q ss_pred HH-HHHHHH
Q 047840 355 NR-VWRKLA 362 (445)
Q Consensus 355 ~~-~~~~~~ 362 (445)
.+ .+++|.
T Consensus 405 ~~~~~~~~f 413 (457)
T 1kt0_A 405 DRRIYANMF 413 (457)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHHHH
Confidence 63 444444
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.07 E-value=3e-05 Score=56.31 Aligned_cols=83 Identities=11% Similarity=-0.011 Sum_probs=67.0
Q ss_pred HHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 047840 282 DGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKL 361 (445)
Q Consensus 282 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 361 (445)
.|...|+...+. .+.+...+..+...|...|++++|...|++.++.. +.+...|..+..++...|++++|...|+++
T Consensus 3 ~a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 456677777642 23457778888888999999999999999888766 567788889999999999999999999999
Q ss_pred HHhCCC
Q 047840 362 AEMGIT 367 (445)
Q Consensus 362 ~~~~~~ 367 (445)
++..|.
T Consensus 80 l~~~~~ 85 (115)
T 2kat_A 80 LAAAQS 85 (115)
T ss_dssp HHHHHH
T ss_pred HHhccc
Confidence 887764
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.04 E-value=0.00018 Score=54.09 Aligned_cols=89 Identities=8% Similarity=-0.069 Sum_probs=41.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 047840 306 VVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRI----YGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKE 381 (445)
Q Consensus 306 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 381 (445)
|...|...+.+++|.++|++..+.+ ++..+..|...|.. .+++++|.+.|+++.+.+ ++.++..|+.+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~a~~~Lg~~y~~ 105 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN--DQDGCLILGYKQYA 105 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC--CHHHHHHHHHHHHC
Confidence 3333334444444444444444332 33444444444444 445555555555554432 33444455555555
Q ss_pred ----cCChHHHHHHHHHHHhcC
Q 047840 382 ----AGWDMEANKVRKLISETG 399 (445)
Q Consensus 382 ----~g~~~~A~~~~~~m~~~~ 399 (445)
.+++++|.+.+++..+.|
T Consensus 106 G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 106 GKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp TSSSCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCcCHHHHHHHHHHHHHCC
Confidence 455555555555544443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=0.00016 Score=68.51 Aligned_cols=153 Identities=10% Similarity=0.027 Sum_probs=125.2
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCc----------HHHHHHHHHHhHHhhCCCCChhHHHHHHHHHH
Q 047840 242 NGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKM----------VRDGLNLFENMSAVYGVEPQLEHYACVVDLLA 311 (445)
Q Consensus 242 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 311 (445)
....++|++.++++...+.. +...|+.--..+...|+ ++++...++.+.+. -+-+..+|..-.-++.
T Consensus 42 ~~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 42 GELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLS 118 (567)
T ss_dssp TCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 34567889999999987433 55566666556655666 89999999999975 2445777887777788
Q ss_pred hcC--ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHc------
Q 047840 312 RAG--MVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYG-KIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEA------ 382 (445)
Q Consensus 312 ~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~------ 382 (445)
+.| +++++++.++++.+.. +.|..+|+.-..++...| .++++++.++++++.+|.+..+|...+.++.+.
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred HcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 889 6799999999999888 789999999999999999 899999999999999999999999999888874
Q ss_pred --------CChHHHHHHHHHHHhc
Q 047840 383 --------GWDMEANKVRKLISET 398 (445)
Q Consensus 383 --------g~~~~A~~~~~~m~~~ 398 (445)
+.++++.+.+++....
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~ 221 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFT 221 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHHHHhh
Confidence 5578888888777653
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.95 E-value=3.6e-05 Score=54.31 Aligned_cols=69 Identities=7% Similarity=-0.071 Sum_probs=57.4
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 047840 298 PQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT 367 (445)
Q Consensus 298 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 367 (445)
.+...+..+..+|...|++++|+..|++.++.. +.+...|..+..+|...|++++|++.|+++++..|.
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 356677888888889999999999999888766 556778888999999999999999999998886653
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00013 Score=50.37 Aligned_cols=69 Identities=12% Similarity=-0.107 Sum_probs=58.4
Q ss_pred CCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 047840 332 GGDANVWGALLSACRIYGK---IEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGM 400 (445)
Q Consensus 332 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 400 (445)
++|+..+..+..++...++ .++|..+++++++.+|.++.+...++..+.+.|++++|...|+++.+..-
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 5677888888888865554 68999999999999999999999999999999999999999999887543
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.90 E-value=0.00081 Score=50.51 Aligned_cols=113 Identities=9% Similarity=0.050 Sum_probs=93.1
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHh----cCChHH
Q 047840 243 GDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLAR----AGMVEE 318 (445)
Q Consensus 243 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 318 (445)
+++++|+++|++..+.| .|+.. +...|...+..++|..+|++..+. -+...+..|...|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46889999999998887 33443 667777888889999999999864 466777888888887 889999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCC
Q 047840 319 AEKFIEEKMGGLGGGDANVWGALLSACRI----YGKIEVGNRVWRKLAEMGIT 367 (445)
Q Consensus 319 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~ 367 (445)
|.++|++..+.+ ++..+..|...|.. .++.++|.+.|+++.+.+.+
T Consensus 80 A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 129 (138)
T 1klx_A 80 AAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 129 (138)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCH
Confidence 999999998765 57778888888988 88999999999999987653
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.89 E-value=2.4e-05 Score=59.46 Aligned_cols=91 Identities=9% Similarity=-0.012 Sum_probs=67.5
Q ss_pred CCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCC----------hHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 047840 277 AKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGM----------VEEAEKFIEEKMGGLGGGDANVWGALLSACR 346 (445)
Q Consensus 277 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 346 (445)
.+.+++|...++...+. -+.+...|..+..++...++ +++|+..|++.++.. +.+..+|..+..+|.
T Consensus 15 ~~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHH
Confidence 34566777777776654 13346666666666666554 458888888888776 567788888888888
Q ss_pred Hc-----------CChHHHHHHHHHHHHhCCCCch
Q 047840 347 IY-----------GKIEVGNRVWRKLAEMGITDFS 370 (445)
Q Consensus 347 ~~-----------g~~~~a~~~~~~~~~~~~~~~~ 370 (445)
.. |++++|++.|+++++.+|++..
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~ 126 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTH 126 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHH
Confidence 76 4899999999999999998753
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.85 E-value=7.9e-05 Score=53.43 Aligned_cols=66 Identities=6% Similarity=-0.184 Sum_probs=61.3
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 333 GDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 333 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
++...+..+...+...|++++|++.|+++++..|.++.++..++.++.+.|++++|.+.+++..+.
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 356778889999999999999999999999999999999999999999999999999999998764
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00026 Score=49.55 Aligned_cols=80 Identities=14% Similarity=0.081 Sum_probs=63.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHhcCCCCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCC
Q 047840 306 VVDLLARAGMVEEAEKFIEEKMGGLGGGDAN-VWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGW 384 (445)
Q Consensus 306 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 384 (445)
....+...|++++|...+++.++.. +.+.. .+..+..++...|++++|+..|+++++.+|.++.++.. +.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~ 76 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KM 76 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HH
Confidence 4556778899999999999988766 55677 88999999999999999999999999999988776632 34
Q ss_pred hHHHHHHHHH
Q 047840 385 DMEANKVRKL 394 (445)
Q Consensus 385 ~~~A~~~~~~ 394 (445)
+.++...+++
T Consensus 77 ~~~a~~~~~~ 86 (99)
T 2kc7_A 77 VMDILNFYNK 86 (99)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHHHH
Confidence 4555555543
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.73 E-value=0.0002 Score=49.06 Aligned_cols=65 Identities=20% Similarity=0.109 Sum_probs=60.4
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 334 DANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 334 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
+...+..+...+...|++++|+..++++++..|.++.++..++.++...|++++|...+++..+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 45678889999999999999999999999999999999999999999999999999999998764
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00028 Score=65.36 Aligned_cols=127 Identities=9% Similarity=-0.055 Sum_probs=94.6
Q ss_pred HHHhcCChHHHHHHHHHHHHc---CCC---C-CHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhh----C-CCCC-hhHHH
Q 047840 238 GVAMNGDAKKSLELFDRMVKS---GTQ---P-TETTFVAVLTTCTHAKMVRDGLNLFENMSAVY----G-VEPQ-LEHYA 304 (445)
Q Consensus 238 ~~~~~~~~~~a~~~~~~m~~~---~~~---p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~-~~~~~ 304 (445)
.+...|++++|+.++++..+. -.. | ...+++.+...|...|++++|..++++....+ | -.|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 456789999999999887653 112 2 24578889999999999999999998876531 2 1222 56688
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhc-----CCC-CCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 047840 305 CVVDLLARAGMVEEAEKFIEEKMG-----GLG-GGD-ANVWGALLSACRIYGKIEVGNRVWRKLAEM 364 (445)
Q Consensus 305 ~l~~~~~~~g~~~~A~~~~~~~~~-----~~~-~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 364 (445)
.|...|...|++++|+.++++.++ .|. .|+ ..+.+.+..++...+.+++|+.++.++.+.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999887643 231 122 234566677788889999999999999873
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00087 Score=50.31 Aligned_cols=91 Identities=12% Similarity=-0.039 Sum_probs=59.2
Q ss_pred CcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcC---ChHHHHHHHHHHhcCCCCC--CHHHHHHHHHHHHHcCChH
Q 047840 278 KMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAG---MVEEAEKFIEEKMGGLGGG--DANVWGALLSACRIYGKIE 352 (445)
Q Consensus 278 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~ 352 (445)
.....+.+-|.+.... + .++..+.-.+.-++++.+ +++++..++++..+.. .| +...+-.+.-++.+.|+++
T Consensus 12 ~~l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~ 88 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYE 88 (152)
T ss_dssp HHHHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHH
Confidence 3455566666655543 2 356666666666777766 5567777777776654 23 3445555666777788888
Q ss_pred HHHHHHHHHHHhCCCCchh
Q 047840 353 VGNRVWRKLAEMGITDFST 371 (445)
Q Consensus 353 ~a~~~~~~~~~~~~~~~~~ 371 (445)
+|.+.++.+++.+|++..+
T Consensus 89 ~A~~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 89 KALKYVRGLLQTEPQNNQA 107 (152)
T ss_dssp HHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHhcCCCCHHH
Confidence 8888888888888876533
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00067 Score=61.69 Aligned_cols=107 Identities=12% Similarity=0.014 Sum_probs=81.1
Q ss_pred hcCChHHHHHHHHHHhcC---CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHH-----hCCCCch---hHHHHH
Q 047840 312 RAGMVEEAEKFIEEKMGG---LGGGD----ANVWGALLSACRIYGKIEVGNRVWRKLAE-----MGITDFS---THVLSY 376 (445)
Q Consensus 312 ~~g~~~~A~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~---~~~~l~ 376 (445)
..|++++|+.++++.++. -+.|+ ..+++.+..+|...|++++|+.+++++++ .||+++. .++.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457889999998876442 12232 36789999999999999999999999987 5666554 577899
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCccCCcccEEEECCeEeEEecCCCCcchhhHHHHHHH
Q 047840 377 NIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIH 436 (445)
Q Consensus 377 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (445)
.+|..+|++++|+.++++..+.... .-...||...+++..++
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEV------------------AHGKDHPYISEIKQEIE 431 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTCHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHH------------------HcCCCChHHHHHHHHHh
Confidence 9999999999999999988653211 12357888887777665
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=0.0005 Score=62.65 Aligned_cols=117 Identities=11% Similarity=-0.007 Sum_probs=85.8
Q ss_pred HHHHHhcCChHHHHHHHHHHhcCC---CCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHH-----hCCCCch---h
Q 047840 307 VDLLARAGMVEEAEKFIEEKMGGL---GGGD----ANVWGALLSACRIYGKIEVGNRVWRKLAE-----MGITDFS---T 371 (445)
Q Consensus 307 ~~~~~~~g~~~~A~~~~~~~~~~~---~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~---~ 371 (445)
+..+.+.|++++|+.++++.++.. +.|+ ..+++.++.+|...|++++|+.+++++++ .+|.++. .
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 445667889999999998876531 2222 35788889999999999999999998886 4565544 4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCccCCcccEEEECCeEeEEecCCCCcchhhHHHHHHHHHHhc
Q 047840 372 HVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHSFLKM 441 (445)
Q Consensus 372 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (445)
+..|+..|..+|++++|+.++++..+--. ..-...||...+++..++..+..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~------------------~~lG~~Hp~~~~~~~~l~~~~~e 425 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMR------------------VTHGREHSLIEDLILLLEECDAN 425 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH------------------HHTCTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHH------------------HhcCCCChHHHHHHHHHHHHHHH
Confidence 66888899999999999998888765311 11235788888888777766543
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.47 E-value=0.0083 Score=52.48 Aligned_cols=70 Identities=9% Similarity=-0.089 Sum_probs=45.3
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 047840 297 EPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITD 368 (445)
Q Consensus 297 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 368 (445)
+.+..+|..+...+...|++++|...+++++..+ |+...|..+...+.-.|+.++|.+.++++..++|..
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 4455566666555555677777777777766554 566666666666666777777777777777776654
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.002 Score=44.31 Aligned_cols=71 Identities=10% Similarity=0.033 Sum_probs=58.7
Q ss_pred CCChhHHHHHHHHHHhcCC---hHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 047840 297 EPQLEHYACVVDLLARAGM---VEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITD 368 (445)
Q Consensus 297 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 368 (445)
+.++..+..+..++...++ .++|..++++.++.. +.++.....+...+...|++++|+..|+++++..|++
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 4567777778877765544 689999999988877 7788888888999999999999999999999988883
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00064 Score=47.42 Aligned_cols=59 Identities=15% Similarity=0.019 Sum_probs=54.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCch-hHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 047840 341 LLSACRIYGKIEVGNRVWRKLAEMGITDFS-THVLSYNIYKEAGWDMEANKVRKLISETG 399 (445)
Q Consensus 341 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 399 (445)
....+...|++++|+..++++++..|.++. .+..++.+|...|++++|.+.+++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 456788899999999999999999999998 99999999999999999999999988754
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0021 Score=45.37 Aligned_cols=78 Identities=14% Similarity=0.027 Sum_probs=61.3
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHhcCC------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhH
Q 047840 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGL------GGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTH 372 (445)
Q Consensus 299 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 372 (445)
+...+-.+...+.+.|++..|...|+...+.. -.+...++..+..++.+.|+++.|...++++.+..|.++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 44555677788888888888888888765431 134677899999999999999999999999999999987765
Q ss_pred HHHH
Q 047840 373 VLSY 376 (445)
Q Consensus 373 ~~l~ 376 (445)
..+.
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 5443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0017 Score=59.10 Aligned_cols=97 Identities=15% Similarity=0.035 Sum_probs=75.2
Q ss_pred cCCcHHHHHHHHHHhHHhh--CCCCC----hhHHHHHHHHHHhcCChHHHHHHHHHHhcC-----C-CCCC-HHHHHHHH
Q 047840 276 HAKMVRDGLNLFENMSAVY--GVEPQ----LEHYACVVDLLARAGMVEEAEKFIEEKMGG-----L-GGGD-ANVWGALL 342 (445)
Q Consensus 276 ~~~~~~~a~~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~~~-~~~~~~l~ 342 (445)
..|++++|..++++..+.. -+.|+ ..+++.|..+|...|++++|+.++++.++. | -.|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 4678999999998877632 12222 467889999999999999999999886432 2 1233 35689999
Q ss_pred HHHHHcCChHHHHHHHHHHHH-----hCCCCchhH
Q 047840 343 SACRIYGKIEVGNRVWRKLAE-----MGITDFSTH 372 (445)
Q Consensus 343 ~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~ 372 (445)
..|...|++++|+.+++++++ .||+++.+-
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 999999999999999999987 688877544
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0026 Score=57.95 Aligned_cols=104 Identities=13% Similarity=0.009 Sum_probs=79.3
Q ss_pred HHHhhcCCcHHHHHHHHHHhHHhh--CCCCC----hhHHHHHHHHHHhcCChHHHHHHHHHHhcC-----C-CCCC-HHH
Q 047840 271 LTTCTHAKMVRDGLNLFENMSAVY--GVEPQ----LEHYACVVDLLARAGMVEEAEKFIEEKMGG-----L-GGGD-ANV 337 (445)
Q Consensus 271 ~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~~~-~~~ 337 (445)
+..+.+.|++++|..++++..... -+.|+ ..+++.++.+|...|++++|+.++++.+.. | -.|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 445667889999999999887531 12222 467888999999999999999999876432 2 1232 356
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHH-----hCCCCchhHHH
Q 047840 338 WGALLSACRIYGKIEVGNRVWRKLAE-----MGITDFSTHVL 374 (445)
Q Consensus 338 ~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~ 374 (445)
++.|...|...|++++|+.+++++++ .||+++.+-..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 89999999999999999999999987 68888765543
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00075 Score=60.47 Aligned_cols=209 Identities=11% Similarity=0.103 Sum_probs=140.4
Q ss_pred CcccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHH
Q 047840 29 NNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYG 108 (445)
Q Consensus 29 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~ 108 (445)
|+..|..++.++.+.|.++ .-..++...++..- ++.+=+.|+-+|++.+++.+-.+++ ..|+......+.+-|.
T Consensus 82 Dps~y~eVi~~A~~~~~~e-dLv~yL~MaRk~~k--e~~IDteLi~ayAk~~rL~elEefl---~~~N~A~iq~VGDrcf 155 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWE-ELVKYLQMARKKAR--ESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCY 155 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCT-THHHHHHTTSTTCC--STTTTHHHHHHHHTSCSSSTTTSTT---SCCSSSCTHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHH-HHHHHHHHHHHHhc--ccccHHHHHHHHHhhCcHHHHHHHH---cCCCcccHHHHHHHHH
Confidence 6667888999999999998 77777776666533 3444457888999988876654442 2356666677778888
Q ss_pred cCCChHHHHHHhccCCC------------------------CChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHH
Q 047840 109 KMGDFENARELFEKMPE------------------------RNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNES 164 (445)
Q Consensus 109 ~~g~~~~A~~~~~~~~~------------------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 164 (445)
..|.++.|.-+|..+.. .++.||-.+-.+|...+++..|.-.--.++- .||
T Consensus 156 ~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIv---had-- 230 (624)
T 3lvg_A 156 DEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD-- 230 (624)
T ss_dssp HSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--
T ss_pred HccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--
Confidence 88888888888777631 3677888888888888888777554433331 222
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCC----C-------ChhhHH
Q 047840 165 GLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN----K-------DAGAWN 233 (445)
Q Consensus 165 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~-------~~~~~~ 233 (445)
....++..|-..|.+++-+.+++.-.... .....+|+.|.-.|++- ++++..+.++-.-. | ....|.
T Consensus 231 eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ 308 (624)
T 3lvg_A 231 ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWA 308 (624)
T ss_dssp CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHH
Confidence 22345666777888888887777766433 45667777777777764 45555554443221 2 455677
Q ss_pred HHHHHHHhcCChHHHHH
Q 047840 234 AMISGVAMNGDAKKSLE 250 (445)
Q Consensus 234 ~l~~~~~~~~~~~~a~~ 250 (445)
.++-.|..-.+++.|..
T Consensus 309 ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 309 ELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHHHHHHHTCHHHHHH
T ss_pred HHHHHHhcchhHHHHHH
Confidence 78877887777776654
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=97.08 E-value=0.044 Score=39.63 Aligned_cols=141 Identities=12% Similarity=0.105 Sum_probs=92.9
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHH
Q 047840 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEE 318 (445)
Q Consensus 239 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 318 (445)
+.-.|..++..++..+.... .+..-||-++--....-+-+-..+.++.+-+-+.+ ..+|++..
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHH
Confidence 34467777888887777664 24445555555444445555555666655443222 13455555
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 319 AEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 319 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
...-+-.+ + .+.......+..+...|+-++-.+++..+....++++.....++.+|.+.|+..+|.+++.+.-+.
T Consensus 80 Vi~C~~~~---n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 80 VVECGVIN---N--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHHT---T--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHh---c--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 55555554 2 344556666777888888888888888876666667888888888888888888888888888888
Q ss_pred CCc
Q 047840 399 GMK 401 (445)
Q Consensus 399 ~~~ 401 (445)
|++
T Consensus 155 G~k 157 (172)
T 1wy6_A 155 GEK 157 (172)
T ss_dssp TCH
T ss_pred hhH
Confidence 875
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.05 E-value=0.018 Score=50.41 Aligned_cols=136 Identities=10% Similarity=0.036 Sum_probs=90.6
Q ss_pred CCCCHHHHHHHHHHhh--c---CCcHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHHh---cC-C----hHHHHHHHHH
Q 047840 260 TQPTETTFVAVLTTCT--H---AKMVRDGLNLFENMSAVYGVEPQ-LEHYACVVDLLAR---AG-M----VEEAEKFIEE 325 (445)
Q Consensus 260 ~~p~~~~~~~l~~~~~--~---~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---~g-~----~~~A~~~~~~ 325 (445)
.+.+...|...+.+.. . ..+..+|..+|+++.+. .|+ ...|..+.-+|.- .+ . .......+..
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l---DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS---SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 3456667777666532 2 23457888888888865 565 3444433333321 11 1 1111112222
Q ss_pred Hhc-CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 047840 326 KMG-GLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETG 399 (445)
Q Consensus 326 ~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 399 (445)
... ...+.++.++..+...+...|++++|...+++++.++| +...|..++.++.-.|++++|.+.+++....+
T Consensus 267 ~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 267 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 111 12267888999888888888999999999999999986 46677889999999999999999998876653
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.28 Score=46.69 Aligned_cols=115 Identities=7% Similarity=-0.038 Sum_probs=53.6
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHH----HHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHH
Q 047840 244 DAKKSLELFDRMVKSGTQPTETT----FVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEA 319 (445)
Q Consensus 244 ~~~~a~~~~~~m~~~~~~p~~~~----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 319 (445)
+.+.|...+....+... .+... ...+.......+...++...+...... .++.....-.+....+.|+++.|
T Consensus 229 d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp CHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred CHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHHH
Confidence 55666666666654321 12221 222222333444234444455443322 22322233333333455667777
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 047840 320 EKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAE 363 (445)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 363 (445)
...|..|.... .....-.--+.+++...|+.++|..+|+.+..
T Consensus 305 ~~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 76666664322 11222233344555666666666666666653
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.86 E-value=0.11 Score=51.81 Aligned_cols=126 Identities=15% Similarity=0.166 Sum_probs=63.8
Q ss_pred HHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHHcCCChHHHHHHhccCCCCChhhHHHHHHHHHhcCCHhHHHH
Q 047840 70 SSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLS 149 (445)
Q Consensus 70 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 149 (445)
..++..+.+.|..+.|.++.+.. ..-.......|++++|.++.+.+. +...|..+...+.+.++++.|.+
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~--------~~~f~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~ 702 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQ--------DQKFELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIE 702 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCH--------HHHHHHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhCCChHHheecCCCc--------chheehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHH
Confidence 45555566666666666554311 111223345666666666665553 34566666666666666666666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHH
Q 047840 150 LFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSV 220 (445)
Q Consensus 150 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 220 (445)
.|.++.. |..+...+...|+.+...++.+.+...| -++....+|.+.|++++|.++
T Consensus 703 ~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~ 758 (814)
T 3mkq_A 703 AFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG------KFNLAFNAYWIAGDIQGAKDL 758 (814)
T ss_dssp HHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC------chHHHHHHHHHcCCHHHHHHH
Confidence 6665532 2233333444555554444444444333 112223334445555555443
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0075 Score=50.55 Aligned_cols=88 Identities=14% Similarity=0.108 Sum_probs=64.7
Q ss_pred hHHHHHHHHHHhcCCCCCC---HHHHHHHHHHHHH-----cCChHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHc-CCh
Q 047840 316 VEEAEKFIEEKMGGLGGGD---ANVWGALLSACRI-----YGKIEVGNRVWRKLAEMGIT-DFSTHVLSYNIYKEA-GWD 385 (445)
Q Consensus 316 ~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~-g~~ 385 (445)
...|...+++.++.. |+ ...|..+...|.. .|+.++|.+.|++++++.|. +..++...++.+++. |+.
T Consensus 179 l~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 356666777766544 44 5677777777777 48888888888888888886 488888888888774 888
Q ss_pred HHHHHHHHHHHhcCCccCCc
Q 047840 386 MEANKVRKLISETGMKKKPG 405 (445)
Q Consensus 386 ~~A~~~~~~m~~~~~~~~~~ 405 (445)
++|.+.+++.........|+
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHHHcCCCCCCCC
Confidence 88888888887765553344
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.84 E-value=6.4e-05 Score=67.12 Aligned_cols=260 Identities=12% Similarity=0.131 Sum_probs=128.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHHcCCChHHHHHHhccCCC--CChhhHHHHHHHHHhcCCH
Q 047840 67 FVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPE--RNAVSWSAIMAAYSRISDF 144 (445)
Q Consensus 67 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~ 144 (445)
.+|..|..+....+.+.+|++.|-+. .|+..|..++.+..+.|.+++-...+...++ +++..=+.|+-+|++.++.
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~rL 132 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRL 132 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSSCCC--SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSCSS
T ss_pred cHHHHHHHHHHccCchHHHHHHHHhC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhCcH
Confidence 34555555555555555554443222 2334455555555555555555555554443 2333334555555555554
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcC
Q 047840 145 KEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGI 224 (445)
Q Consensus 145 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 224 (445)
.+..+++ -.||..-...+..-|...|.++.|.-+|. +..-|..|..++.+.|++..|.+.-++.
T Consensus 133 ~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys---------~isN~akLAstLV~L~~yq~AVdaArKA 196 (624)
T 3lvg_A 133 AELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYN---------NVSNFGRLASTLVHLGEYQAAVDGARKA 196 (624)
T ss_dssp STTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGG---------GSCCCTTTSSSSSSCSGGGSSTTTTTTC
T ss_pred HHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHH---------hCccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4433322 12333334444444555554444443332 2222334444555555555544332222
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCC-CCChhHH
Q 047840 225 SNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGV-EPQLEHY 303 (445)
Q Consensus 225 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~ 303 (445)
.++.+|..+-.+|...+.+.-|.-.--.+.-. |+ ....++..|-..|-+++-+.+++.-. |+ ......|
T Consensus 197 --ns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEagl---glErAHmGmF 266 (624)
T 3lvg_A 197 --NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAAL---GLERAHMGMF 266 (624)
T ss_dssp --CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHT---TSTTCCHHHH
T ss_pred --CChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHh---CCCchhHHHH
Confidence 36668888888888877766654433333221 11 12234555666777777666666655 22 2445566
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhcC-CCCC------CHHHHHHHHHHHHHcCChHHHH
Q 047840 304 ACVVDLLARAGMVEEAEKFIEEKMGG-LGGG------DANVWGALLSACRIYGKIEVGN 355 (445)
Q Consensus 304 ~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~------~~~~~~~l~~~~~~~g~~~~a~ 355 (445)
+-|.-.|++- ++++..+.++..-.. +++. ....|.-++-.|..-.+++.|.
T Consensus 267 TELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 267 TELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 6666666554 445554444432211 3322 1223666666666666666553
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.80 E-value=0.013 Score=43.90 Aligned_cols=78 Identities=18% Similarity=0.152 Sum_probs=33.2
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhhcCC---cHHHHHHHHHHhHHhhCCCC--ChhHHHHHHHHHHhcCChHHHHHH
Q 047840 248 SLELFDRMVKSGTQPTETTFVAVLTTCTHAK---MVRDGLNLFENMSAVYGVEP--QLEHYACVVDLLARAGMVEEAEKF 322 (445)
Q Consensus 248 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~ 322 (445)
+.+.|.+..+.|. ++..+...+..++++.+ +.++++.+++.+.+. . .| +...+-.|.-+|.+.|++++|++.
T Consensus 17 ~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 17 FEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-CHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 3334443333332 34444444444444444 333555555554443 1 12 122333334444455555555555
Q ss_pred HHHHhc
Q 047840 323 IEEKMG 328 (445)
Q Consensus 323 ~~~~~~ 328 (445)
++.+++
T Consensus 94 ~~~lL~ 99 (152)
T 1pc2_A 94 VRGLLQ 99 (152)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 555443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.78 E-value=0.07 Score=53.15 Aligned_cols=45 Identities=20% Similarity=0.225 Sum_probs=24.6
Q ss_pred HccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 047840 209 SKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRM 255 (445)
Q Consensus 209 ~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 255 (445)
...|+++.|.++.+.+. +...|..+...+.+.++++.|++.|.++
T Consensus 663 l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 34455555555554442 3445555666666666666666655554
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=96.49 E-value=0.025 Score=41.85 Aligned_cols=61 Identities=11% Similarity=0.051 Sum_probs=48.7
Q ss_pred hcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHH
Q 047840 312 RAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHV 373 (445)
Q Consensus 312 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 373 (445)
..++.++|.++|+.+++.+-.. ..+|.....--.+.|+...|.+++.+++..+|.+.....
T Consensus 72 ei~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le 132 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLE 132 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHH
Confidence 4478999999999886654233 888888888888999999999999999998887554443
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.47 E-value=0.022 Score=40.00 Aligned_cols=66 Identities=12% Similarity=-0.190 Sum_probs=56.2
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-------CCCchhHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 333 GDANVWGALLSACRIYGKIEVGNRVWRKLAEMG-------ITDFSTHVLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 333 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
.+..-+..++..+...|+++.|...|+.+++.. +..+.++..++.+|.+.|++++|...+++..+.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 455667788999999999999999999998842 345667889999999999999999999998764
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.97 E-value=0.025 Score=40.78 Aligned_cols=92 Identities=12% Similarity=-0.038 Sum_probs=52.3
Q ss_pred CcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHH---HHHHHHHHhcCCCCC--CHHHHHHHHHHHHHcCChH
Q 047840 278 KMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEE---AEKFIEEKMGGLGGG--DANVWGALLSACRIYGKIE 352 (445)
Q Consensus 278 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~ 352 (445)
.....+.+-|...... |. |+..+--.+.-++.+..+... ++.+++.+.+.+ .| .....-.|.-++.+.|+++
T Consensus 15 ~~l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHH
Confidence 3444555555544432 22 555555555556666655444 666777766544 23 2233444555667777777
Q ss_pred HHHHHHHHHHHhCCCCchhH
Q 047840 353 VGNRVWRKLAEMGITDFSTH 372 (445)
Q Consensus 353 ~a~~~~~~~~~~~~~~~~~~ 372 (445)
+|.+.++.+++..|.+..+.
T Consensus 92 ~A~~~~~~lL~~eP~n~QA~ 111 (126)
T 1nzn_A 92 KALKYVRGLLQTEPQNNQAK 111 (126)
T ss_dssp HHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHH
Confidence 77777777777777665433
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.92 E-value=0.14 Score=36.95 Aligned_cols=86 Identities=17% Similarity=0.113 Sum_probs=49.1
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHH---HHHHHHHhHHhhCCCC--ChhHHHHHHHHHHhcCCh
Q 047840 242 NGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRD---GLNLFENMSAVYGVEP--QLEHYACVVDLLARAGMV 316 (445)
Q Consensus 242 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~ 316 (445)
......+.+-|.+....|. |+..+-..+..++.+..+... ++.+++.+.+. + .| .....-.|.-++.+.|++
T Consensus 14 ~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~-~-~p~~~Rd~lY~LAvg~yklg~Y 90 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEY 90 (126)
T ss_dssp HHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-S-CHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CcchHHHHHHHHHHHHHHhhhH
Confidence 3344455555555544443 555555566666666665554 66667666643 1 13 222333455566777777
Q ss_pred HHHHHHHHHHhcCC
Q 047840 317 EEAEKFIEEKMGGL 330 (445)
Q Consensus 317 ~~A~~~~~~~~~~~ 330 (445)
++|++.++.+++..
T Consensus 91 ~~A~~~~~~lL~~e 104 (126)
T 1nzn_A 91 EKALKYVRGLLQTE 104 (126)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhC
Confidence 77777777776544
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.82 E-value=0.05 Score=52.72 Aligned_cols=56 Identities=11% Similarity=-0.076 Sum_probs=51.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHH
Q 047840 341 LLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLIS 396 (445)
Q Consensus 341 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 396 (445)
-.+-|...|+++.|+.+.+++....|.+..+|..|+.+|...|+|+.|+-.++.+.
T Consensus 343 Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 343 QTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 34557788999999999999999999999999999999999999999999998884
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.70 E-value=0.51 Score=36.34 Aligned_cols=25 Identities=4% Similarity=0.263 Sum_probs=10.8
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHH
Q 047840 129 VSWSAIMAAYSRISDFKEVLSLFRQ 153 (445)
Q Consensus 129 ~~~~~l~~~~~~~~~~~~a~~~~~~ 153 (445)
..|..|.......|+++-|.+.|.+
T Consensus 35 ~~Wk~Lg~~AL~~gn~~lAe~cy~~ 59 (177)
T 3mkq_B 35 ITWERLIQEALAQGNASLAEMIYQT 59 (177)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHH
Confidence 3344444444444444444444433
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.54 E-value=0.91 Score=38.16 Aligned_cols=117 Identities=11% Similarity=0.100 Sum_probs=61.3
Q ss_pred cCChHHHHHHhhcCCCCChh--hHHHHHHH-HHhc--CC------hHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhhc
Q 047840 211 CGHVHSALSVFEGISNKDAG--AWNAMISG-VAMN--GD------AKKSLELFDRMVKSGTQPT---ETTFVAVLTTCTH 276 (445)
Q Consensus 211 ~g~~~~a~~~~~~~~~~~~~--~~~~l~~~-~~~~--~~------~~~a~~~~~~m~~~~~~p~---~~~~~~l~~~~~~ 276 (445)
.++..+-...+.+..+.++. .|..++.+ +... |+ ...|...+++..+. .|+ ...|..+...|..
T Consensus 134 ~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~ 211 (301)
T 3u64_A 134 SGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAA 211 (301)
T ss_dssp SSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHH
T ss_pred hcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHh
Confidence 34444555555555444333 34444332 2221 22 34555555555553 344 3455556655655
Q ss_pred C-----CcHHHHHHHHHHhHHhhCCCC--ChhHHHHHHHHHHh-cCChHHHHHHHHHHhcCCCC
Q 047840 277 A-----KMVRDGLNLFENMSAVYGVEP--QLEHYACVVDLLAR-AGMVEEAEKFIEEKMGGLGG 332 (445)
Q Consensus 277 ~-----~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~ 332 (445)
. |+.++|.+.|++..+. .| +..++....+.++. .|+.+++.+.+++.+.....
T Consensus 212 vPp~~gGd~ekA~~~ferAL~L---nP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 212 APESFGGGMEKAHTAFEHLTRY---CSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp SCTTTTCCHHHHHHHHHHHHHH---CCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred CCCccCCCHHHHHHHHHHHHHh---CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 3 6667777777666644 34 24555555666655 36666666666666655433
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=95.26 E-value=0.32 Score=36.06 Aligned_cols=102 Identities=7% Similarity=-0.031 Sum_probs=68.9
Q ss_pred ChhHHHHHHHHHHhcCCh------HHHHHHHHHHhcCCCCCCH--------HHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 047840 299 QLEHYACVVDLLARAGMV------EEAEKFIEEKMGGLGGGDA--------NVWGALLSACRIYGKIEVGNRVWRKLAEM 364 (445)
Q Consensus 299 ~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~~~~~~~--------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 364 (445)
|..+|-..+...-+.|+. ++.+++|++.... ++|+. ..|-... .+...++.++|.++|+.+++.
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA-~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFA-ELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHH-HHHHHHCGGGCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 455555555555555666 6666677766553 24432 1122112 123458999999999999887
Q ss_pred CCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhcCCcc
Q 047840 365 GITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKK 402 (445)
Q Consensus 365 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 402 (445)
...-+..|...+..-.++|+...|.+++.+....+-+|
T Consensus 90 hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 90 CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 55556677788888999999999999999988765544
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=95.06 E-value=1.4 Score=43.85 Aligned_cols=252 Identities=8% Similarity=-0.067 Sum_probs=121.6
Q ss_pred HHcCCChHHHHHHhccCCC----CChh--hHHHHHHHHHhcCCHhHHHHHHHHHHHcCC--C-----CCHHHHHHHHHHH
Q 047840 107 YGKMGDFENARELFEKMPE----RNAV--SWSAIMAAYSRISDFKEVLSLFRQMQEVGM--K-----PNESGLVSVLTAC 173 (445)
Q Consensus 107 ~~~~g~~~~A~~~~~~~~~----~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~-----p~~~~~~~l~~~~ 173 (445)
.+..|+.++++.++..... .+.. .=..+.-+....|..+++..++.......- . +....-.++.-+.
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 4455666667776666553 1211 112233345555655567776666544211 0 1111112222222
Q ss_pred HccCC-hhHHHHHHHHHHHcCCCCch--hhhhHHHHHHHccCChHHHHHHhhcCCCC-C--hhhHHHHHHHHHhcCChHH
Q 047840 174 AHLGA-ITQGLWVHSYAKRYHLEKNV--ILATAVVDMYSKCGHVHSALSVFEGISNK-D--AGAWNAMISGVAMNGDAKK 247 (445)
Q Consensus 174 ~~~~~-~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~--~~~~~~l~~~~~~~~~~~~ 247 (445)
.-.|. -+++...+..+..... +.. ..-.+|...++-.|+-+....++..+.+. + ..-...+.-++...|+.+.
T Consensus 464 a~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~ 542 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQEL 542 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGG
T ss_pred HhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHH
Confidence 22332 2344444544444321 111 11223334455666666666665543221 2 1222233334556777777
Q ss_pred HHHHHHHHHHcCCCCCHHHH--HHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHH
Q 047840 248 SLELFDRMVKSGTQPTETTF--VAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEE 325 (445)
Q Consensus 248 a~~~~~~m~~~~~~p~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 325 (445)
+..+.+.+... ..|....- ..+.-+|+..|+.....+++..+... ...+......+.-++...|+.+.+.++++.
T Consensus 543 ~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rlv~~ 619 (963)
T 4ady_A 543 ADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRIVQL 619 (963)
T ss_dssp GHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHHTTT
T ss_pred HHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHHHHH
Confidence 77777777653 22222211 23344577788877777788777752 222333333333344456776667777766
Q ss_pred HhcCCCCCCHHHHHHHHHHHHHcCCh-HHHHHHHHHHHH
Q 047840 326 KMGGLGGGDANVWGALLSACRIYGKI-EVGNRVWRKLAE 363 (445)
Q Consensus 326 ~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~ 363 (445)
+.+.+ .|.+..-..+.-+....|+. .+++..+..+..
T Consensus 620 L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 620 LSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp GGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 65544 44444444444444444443 566777776653
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.60 E-value=2 Score=39.13 Aligned_cols=92 Identities=9% Similarity=0.140 Sum_probs=52.8
Q ss_pred hHHHHHHHccCChHHHHHHhhcCCC----C-C----hhhHHHHHHHHHhcCChHHHHHHHHHHHH----cCCCCCH--HH
Q 047840 202 TAVVDMYSKCGHVHSALSVFEGISN----K-D----AGAWNAMISGVAMNGDAKKSLELFDRMVK----SGTQPTE--TT 266 (445)
Q Consensus 202 ~~l~~~~~~~g~~~~a~~~~~~~~~----~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~----~~~~p~~--~~ 266 (445)
..|...|...|++.+|..++..+.. . + ...+..-+..|...+++..|..++++... ....|+. ..
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 4456666777777777776665531 1 1 23455556667777777777777776532 1112221 23
Q ss_pred HHHHHHHhhcCCcHHHHHHHHHHhHHh
Q 047840 267 FVAVLTTCTHAKMVRDGLNLFENMSAV 293 (445)
Q Consensus 267 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (445)
+...+..+...+++.+|.+.|.++...
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 444455556667777777766666543
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=94.56 E-value=0.12 Score=46.28 Aligned_cols=69 Identities=12% Similarity=-0.039 Sum_probs=51.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHh-----cCCccCCcc
Q 047840 338 WGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISE-----TGMKKKPGC 406 (445)
Q Consensus 338 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~~ 406 (445)
...++.++...|+++++...++.+...+|-+...+..++.++.+.|+..+|.+.|+...+ .|+.|.|.+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 344566677778888888888888888887777788888888888888888887777643 477775543
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=94.41 E-value=0.75 Score=31.31 Aligned_cols=62 Identities=15% Similarity=0.040 Sum_probs=50.7
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHH
Q 047840 315 MVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY 376 (445)
Q Consensus 315 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 376 (445)
+.-+..+-++.+....+.|++.+..+.+++|.+.+++..|+++|+-+...-.+...+|..++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l 86 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 86 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence 55678888888888888999999999999999999999999999998876554444566554
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=94.21 E-value=1.1 Score=32.55 Aligned_cols=32 Identities=16% Similarity=0.158 Sum_probs=12.5
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHhcCC
Q 047840 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGL 330 (445)
Q Consensus 299 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 330 (445)
++...-.+..+|.+.|+..+|.+++.+.-+.|
T Consensus 124 ~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 124 SASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 33333333334444444444444443333333
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.77 E-value=1.8 Score=33.34 Aligned_cols=128 Identities=11% Similarity=0.110 Sum_probs=74.2
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChH
Q 047840 238 GVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVE 317 (445)
Q Consensus 238 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 317 (445)
...+.|+++.|.++.+++ .+...|..|.......|+++-|...|..... +..+.-.|.-.|+.+
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS----------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------HHHHHHHHHHHTCHH
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------HHHHHHHHHHhCCHH
Confidence 344567777777776654 2566777777777777777777777776652 233444455567766
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHH
Q 047840 318 EAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLI 395 (445)
Q Consensus 318 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 395 (445)
+..++-+.....| . ++.....+.-.|+++++.++|.+.-+ +...+......|-.+.|.++.+.+
T Consensus 78 ~L~kla~iA~~~g-~-----~n~af~~~l~lGdv~~~i~lL~~~~r--------~~eA~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 78 KLSKMQNIAQTRE-D-----FGSMLLNTFYNNSTKERSSIFAEGGS--------LPLAYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHHTT-C-----HHHHHHHHHHHTCHHHHHHHHHHTTC--------HHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCc-c-----HHHHHHHHHHcCCHHHHHHHHHHCCC--------hHHHHHHHHHcCcHHHHHHHHHHh
Confidence 6665555544333 1 44445555667777777777755321 111111222245566666676654
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=93.36 E-value=4.5 Score=41.96 Aligned_cols=28 Identities=18% Similarity=0.170 Sum_probs=17.2
Q ss_pred chhhhhHHHHHHHccCChHHHHHHhhcC
Q 047840 197 NVILATAVVDMYSKCGHVHSALSVFEGI 224 (445)
Q Consensus 197 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 224 (445)
++.....+..+|...|++++|..+|.+.
T Consensus 841 ~~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 841 DPIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred CcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3333344556667777777777777654
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=93.16 E-value=3.7 Score=35.09 Aligned_cols=180 Identities=10% Similarity=-0.006 Sum_probs=102.4
Q ss_pred HhcCCHHHHHHHhccCCCCChhhHHHHHHHHHcCCChHHHHHHhccCCCCChhhHHHHHHHHHhcCCHhHHHHH----HH
Q 047840 77 SLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSL----FR 152 (445)
Q Consensus 77 ~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~ 152 (445)
...|++=+|.+. |.++..=|.+.+++++|.+++..- ...+.+.|+...|-++ ++
T Consensus 24 I~~G~yYEAhQ~-----------~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llve 81 (312)
T 2wpv_A 24 IKAGDYYEAHQT-----------LRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLE 81 (312)
T ss_dssp HHHTCHHHHHHH-----------HHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhccChHHHHHH-----------HHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHH
Confidence 345666666655 455666667777777777665432 3345566776665554 44
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHccCChh-HHHHHHHHHH----HcC--CCCchhhhhHHHHHHHccCChHHHHHHhhcCC
Q 047840 153 QMQEVGMKPNESGLVSVLTACAHLGAIT-QGLWVHSYAK----RYH--LEKNVILATAVVDMYSKCGHVHSALSVFEGIS 225 (445)
Q Consensus 153 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 225 (445)
-..+.+++++......++..+.....-+ .-.++.+.++ +.| ...++.....+...|.+.|++.+|+..|---.
T Consensus 82 v~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~ 161 (312)
T 2wpv_A 82 VYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGT 161 (312)
T ss_dssp HHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC
Confidence 4455678888877777777766543222 1223333333 333 23467788888899999999999988775222
Q ss_pred CCChhhHHHHHHHHHhc---CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHh
Q 047840 226 NKDAGAWNAMISGVAMN---GDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAV 293 (445)
Q Consensus 226 ~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (445)
..|...+..++--+... |...++ +...-..++. |...++...|..+++...+.
T Consensus 162 ~~s~~~~a~~l~~w~~~~~~~~~~e~--------------dlf~~RaVL~-yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 162 HDSMIKYVDLLWDWLCQVDDIEDSTV--------------AEFFSRLVFN-YLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCHHHH--------------HHHHHHHHHH-HHHTTBHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhcCCCCcchH--------------HHHHHHHHHH-HHHhcCHHHHHHHHHHHHHH
Confidence 22344444444333322 222221 1111122222 44568888888888877654
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=93.11 E-value=1.8 Score=31.33 Aligned_cols=62 Identities=15% Similarity=0.040 Sum_probs=50.2
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHH
Q 047840 315 MVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY 376 (445)
Q Consensus 315 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 376 (445)
+.-+..+-++.+....+.|++.+..+.+++|.+.+++..|+++|+-+...-.+...+|..++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~l 129 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 129 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 44467777788888888999999999999999999999999999999876544455566554
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=92.74 E-value=1.8 Score=44.92 Aligned_cols=78 Identities=6% Similarity=-0.026 Sum_probs=44.3
Q ss_pred hhhHHHHHHHccCChHHHHHHhhcC----CCCCh----hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 047840 200 LATAVVDMYSKCGHVHSALSVFEGI----SNKDA----GAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVL 271 (445)
Q Consensus 200 ~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 271 (445)
-|..++..+.+.+.++.+.++-... ...+. ..|..+...+...|++++|...+-.+..... -...+..++
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV 978 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDFV 978 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHH
Confidence 3555666666666666665554322 11121 2466677777777888888777776655433 234455555
Q ss_pred HHhhcCCc
Q 047840 272 TTCTHAKM 279 (445)
Q Consensus 272 ~~~~~~~~ 279 (445)
..++..|.
T Consensus 979 ~~lce~~~ 986 (1139)
T 4fhn_B 979 NQLTKQGK 986 (1139)
T ss_dssp HHHHHHCC
T ss_pred HHHHhCCC
Confidence 55554443
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=92.41 E-value=7.7 Score=36.92 Aligned_cols=320 Identities=9% Similarity=0.003 Sum_probs=162.2
Q ss_pred HHHHHHHHhcCCC-ChhhHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHHcCCChHHHHHHhccCC---CCC
Q 047840 52 FVHAHVVKFGFGE-DPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMP---ERN 127 (445)
Q Consensus 52 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~ 127 (445)
++...+.+..-.| ....-+..+..+.+.+++......+.. ...+...-.....+....|+..+|......+- ...
T Consensus 57 ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~ 135 (618)
T 1qsa_A 57 TVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQ 135 (618)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCC
T ss_pred HHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC
Confidence 4444445532222 223345556677778899988887776 44456666667778888888766666554432 124
Q ss_pred hhhHHHHHHHHHhcCCHhH--HHHHHHHHHHcC-----------CCCCHHHH-HHHHHHHHccCChhHHHHHHHHHHHcC
Q 047840 128 AVSWSAIMAAYSRISDFKE--VLSLFRQMQEVG-----------MKPNESGL-VSVLTACAHLGAITQGLWVHSYAKRYH 193 (445)
Q Consensus 128 ~~~~~~l~~~~~~~~~~~~--a~~~~~~~~~~~-----------~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~ 193 (445)
+..+..++..+.+.|.... ...=++.+...| +.++.... ..++.... +...+..... ..
T Consensus 136 p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~---~p~~~~~~~~---~~- 208 (618)
T 1qsa_A 136 PNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLAN---NPNTVLTFAR---TT- 208 (618)
T ss_dssp CTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGGGHHHHHH---HS-
T ss_pred cHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHh---ChHhHHHHHh---cc-
Confidence 5566777777776665433 333333333332 11121111 11111111 1111111111 11
Q ss_pred CCCchh---hhhHHHHHHHccCChHHHHHHhhcCCC---CChh----hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 047840 194 LEKNVI---LATAVVDMYSKCGHVHSALSVFEGISN---KDAG----AWNAMISGVAMNGDAKKSLELFDRMVKSGTQPT 263 (445)
Q Consensus 194 ~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~----~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 263 (445)
.++.. .+...+.-+.+ .+.+.|...+....+ .+.. .+..+...+...+...++...+....... ++
T Consensus 209 -~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~ 284 (618)
T 1qsa_A 209 -GATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QS 284 (618)
T ss_dssp -CCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CC
T ss_pred -CCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CC
Confidence 12211 11112222333 377888888876532 1222 23333333444553566677777655432 34
Q ss_pred HHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 047840 264 ETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLS 343 (445)
Q Consensus 264 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 343 (445)
.....-.+....+.|+++.|...|+.|... ......-.--+..++...|+.++|..+|..+.. +.+ .|..+.
T Consensus 285 ~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~--~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~---~~~--fYg~lA- 356 (618)
T 1qsa_A 285 TSLIERRVRMALGTGDRRGLNTWLARLPME--AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ---QRG--FYPMVA- 356 (618)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHSCTT--GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SCS--HHHHHH-
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHcccc--ccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc---CCC--hHHHHH-
Confidence 433334444445679999999999888642 112233333456677888999999999999863 222 233332
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCch-----hHHHHHHHHHHcCChHHHHHHHHHHHh
Q 047840 344 ACRIYGKIEVGNRVWRKLAEMGITDFS-----THVLSYNIYKEAGWDMEANKVRKLISE 397 (445)
Q Consensus 344 ~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~m~~ 397 (445)
..+.|..-.. . .....+.... .-...+..+...|...+|...+..+.+
T Consensus 357 -a~~Lg~~~~~-~----~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~ 409 (618)
T 1qsa_A 357 -AQRIGEEYEL-K----IDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVK 409 (618)
T ss_dssp -HHHTTCCCCC-C----CCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred -HHHcCCCCCC-C----CCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHh
Confidence 2233321000 0 0001111110 122345567788888888887777654
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.12 E-value=0.85 Score=34.53 Aligned_cols=115 Identities=10% Similarity=-0.047 Sum_probs=56.8
Q ss_pred HHHHhhcCCcHHHHHHHHHHhHHhhCCCCCh-------hHHHHHHHHHHhcCChHHHHHHHHHHhcC--CCCCCHHHHHH
Q 047840 270 VLTTCTHAKMVRDGLNLFENMSAVYGVEPQL-------EHYACVVDLLARAGMVEEAEKFIEEKMGG--LGGGDANVWGA 340 (445)
Q Consensus 270 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~ 340 (445)
-+..+...+.++.|+-+.+.+....+..|+. .++..+.+++...|++.+|...|++.+.. .+..+..+...
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~ 105 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPS 105 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 3445556666666666666555432333432 23445556666666666666666664322 11111111100
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHH
Q 047840 341 LLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLIS 396 (445)
Q Consensus 341 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 396 (445)
+. ........ . ..+.+...-.-++.+|.+.|++++|+.+++.+.
T Consensus 106 ~~----~~ss~p~s-------~-~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 106 TG----NSASTPQS-------Q-CLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp -----------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred cc----ccCCCccc-------c-cccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 00 00000000 0 011233456679999999999999999987653
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=92.10 E-value=1.1 Score=32.53 Aligned_cols=66 Identities=6% Similarity=-0.129 Sum_probs=34.5
Q ss_pred CCCHHHHHHHHHHHHHcCCh---HHHHHHHHHHHHhCCC-CchhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 047840 332 GGDANVWGALLSACRIYGKI---EVGNRVWRKLAEMGIT-DFSTHVLSYNIYKEAGWDMEANKVRKLISE 397 (445)
Q Consensus 332 ~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 397 (445)
.|++.+--.+..++.+..+. .+++.+++.+.+.+|. ....+..++.++.+.|++++|.+..+.+.+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 45555544555555544432 3455555555555553 233444555566666666666665555543
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=91.00 E-value=1.1 Score=30.44 Aligned_cols=62 Identities=21% Similarity=0.305 Sum_probs=42.8
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHH
Q 047840 244 DAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVV 307 (445)
Q Consensus 244 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 307 (445)
+.-+..+-++.+.....-|++....+.+.+|.+.+++..|.++++.++.+.+ +...+|..++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~l 86 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVI 86 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHH
Confidence 3445666666666666778888888888888888888888888888776533 3344566555
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.94 E-value=3.1 Score=31.49 Aligned_cols=24 Identities=17% Similarity=0.430 Sum_probs=13.9
Q ss_pred hHHHHHHHccCChHHHHHHhhcCC
Q 047840 202 TAVVDMYSKCGHVHSALSVFEGIS 225 (445)
Q Consensus 202 ~~l~~~~~~~g~~~~a~~~~~~~~ 225 (445)
.-+..||.+.+++++|+.+++.++
T Consensus 126 ykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 126 YKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHCCHHHHHHHHhcCC
Confidence 335556666666666666666554
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.30 E-value=2.6 Score=41.01 Aligned_cols=51 Identities=14% Similarity=-0.044 Sum_probs=27.3
Q ss_pred HHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 047840 310 LARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKL 361 (445)
Q Consensus 310 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 361 (445)
+...|+++-|+++-++....- +-+-.+|-.|..+|...|+++.|+-.+..+
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 334555555555555554433 334555555566666666665555554443
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=90.00 E-value=6.1 Score=31.31 Aligned_cols=16 Identities=19% Similarity=0.090 Sum_probs=6.0
Q ss_pred CHHHHHHHHHHHHccC
Q 047840 162 NESGLVSVLTACAHLG 177 (445)
Q Consensus 162 ~~~~~~~l~~~~~~~~ 177 (445)
+...-...+.++.+.+
T Consensus 94 ~~~vr~~a~~aL~~~~ 109 (211)
T 3ltm_A 94 DGWVRQSAAVALGQIG 109 (211)
T ss_dssp SHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhC
Confidence 3333333333333333
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=89.89 E-value=17 Score=36.32 Aligned_cols=262 Identities=8% Similarity=-0.012 Sum_probs=145.0
Q ss_pred HHhcCCHHHHHHHhccCCC----CChhh--HHHHHHHHHcCCChHHHHHHhccCCC-CC--------h--hhHHHHHHHH
Q 047840 76 YSLVHKMGTARALFDKSPD----RDVVT--WTTMVDGYGKMGDFENARELFEKMPE-RN--------A--VSWSAIMAAY 138 (445)
Q Consensus 76 ~~~~g~~~~a~~~~~~~~~----~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~-~~--------~--~~~~~l~~~~ 138 (445)
....|+.+++..+++.-.. .+..+ -..+.-+.+..|..+++..++..... ++ . ..-.++.-++
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 4566888888888887654 22222 22344455666766677776665432 22 1 1122233333
Q ss_pred HhcCC-HhHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHH--HHHccCC
Q 047840 139 SRISD-FKEVLSLFRQMQEVGMKPNESGLV--SVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVD--MYSKCGH 213 (445)
Q Consensus 139 ~~~~~-~~~a~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~ 213 (445)
+-.|. -+++.+.+..+.... .+...... ++...+...|+-+....++..+.+.. +..+...+.. ++.-.|+
T Consensus 464 a~~GS~~eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTC
T ss_pred HhcCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCC
Confidence 33342 346666666666532 11111122 33344556778777778887776542 2233333333 3446788
Q ss_pred hHHHHHHhhcCCC-CChh-hH---HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHH
Q 047840 214 VHSALSVFEGISN-KDAG-AW---NAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFE 288 (445)
Q Consensus 214 ~~~a~~~~~~~~~-~~~~-~~---~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 288 (445)
.+.+..+++.+.. .++. -| .++.-+|+..|+.....+++..+... ...+......+.-++...|+.+.+.++++
T Consensus 540 ~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~rlv~ 618 (963)
T 4ady_A 540 QELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPRIVQ 618 (963)
T ss_dssp GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHHHTT
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 7777777776653 3333 22 23455788899988888899988765 22233333333334445666666777777
Q ss_pred HhHHhhCCCCChhHHHHHHHHHHhcCCh-HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 047840 289 NMSAVYGVEPQLEHYACVVDLLARAGMV-EEAEKFIEEKMGGLGGGDANVWGALLSACRI 347 (445)
Q Consensus 289 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 347 (445)
.+.. ...|....-.++.-+....|.. .++..++..+.. .+|..+-..-+.++..
T Consensus 619 ~L~~--~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG~ 673 (963)
T 4ady_A 619 LLSK--SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALSM 673 (963)
T ss_dssp TGGG--CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHHH
T ss_pred HHHh--cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHHH
Confidence 6664 3345555445555555555554 678888888853 3455554444444443
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=89.81 E-value=4.4 Score=29.36 Aligned_cols=73 Identities=11% Similarity=0.010 Sum_probs=41.6
Q ss_pred CChhHHHHHHHHHHhcCC---hHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCch
Q 047840 298 PQLEHYACVVDLLARAGM---VEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFS 370 (445)
Q Consensus 298 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 370 (445)
|+..+--.+.-++.+..+ ..+++.+++++.+.+.......+-.+.-++.+.|++++|.+..+.+++..|.+..
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 113 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence 444443344444554443 3456666666665441112344555566677777777777777777777777643
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=89.26 E-value=6.5 Score=34.97 Aligned_cols=60 Identities=10% Similarity=0.080 Sum_probs=40.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 047840 303 YACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAE 363 (445)
Q Consensus 303 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 363 (445)
...++..+...|++++|...+..+.... +-+...|..++.++...|+..+|++.|++..+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445666667777777777777666555 55666777777777777777777777776544
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=89.11 E-value=12 Score=33.30 Aligned_cols=294 Identities=12% Similarity=0.036 Sum_probs=148.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHhccCCC--------CChhhHHHHHHHHHcCC-ChHHHHHHhccCCC---CChhhH----
Q 047840 68 VVSSLLEFYSLVHKMGTARALFDKSPD--------RDVVTWTTMVDGYGKMG-DFENARELFEKMPE---RNAVSW---- 131 (445)
Q Consensus 68 ~~~~l~~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~---~~~~~~---- 131 (445)
....|...|.+.|+.++..+++..... ........++..+.... ..+.-.++..+..+ ..-.+|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~ 100 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888888888888776544 13344556666665543 23333333333321 111222
Q ss_pred --HHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHccCChhHHHHHHHHHHHcC--CCCchhhhh
Q 047840 132 --SAIMAAYSRISDFKEVLSLFRQMQEVGMKPNE-----SGLVSVLTACAHLGAITQGLWVHSYAKRYH--LEKNVILAT 202 (445)
Q Consensus 132 --~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~ 202 (445)
..++..|...|++.+|.+++.++.+.=-..|. ..+..-+..|...+++.++...+....... +.+++.+..
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a 180 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQG 180 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHH
Confidence 25778889999999999998888663111121 345556667788888888888887776432 223333222
Q ss_pred HH----HHHHH-ccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcC
Q 047840 203 AV----VDMYS-KCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHA 277 (445)
Q Consensus 203 ~l----~~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 277 (445)
.+ ...+. ..++|..|...|-+. ...|-..+.+ .+. +...|..+..... .
T Consensus 181 ~i~~~~Gi~~l~~~rdyk~A~~~F~ea-----------f~~f~~~~~~-~~~-------------~~lkYlvL~aLl~-~ 234 (394)
T 3txn_A 181 ALDLQSGILHAADERDFKTAFSYFYEA-----------FEGFDSVDSV-KAL-------------TSLKYMLLCKIML-G 234 (394)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHH-----------HHHHTTTCHH-HHH-------------HHHHHHHHHHHHT-T
T ss_pred HHHHHhhHHHHHhccCHHHHHHHHHHH-----------HhcccccccH-HHH-------------HHHHHHHHHHHHc-C
Confidence 11 12234 556666666555331 0111111110 000 1223333222222 2
Q ss_pred CcHHHHHHHH-HHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 047840 278 KMVRDGLNLF-ENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNR 356 (445)
Q Consensus 278 ~~~~~a~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 356 (445)
...+ ...++ ......+ ..|....+..++.+| ..+++.+...++..... .+..|+.....+-..+.+. . ..
T Consensus 235 ~r~e-l~~~l~~~~~~~~-~~pei~~l~~L~~a~-~~~dl~~f~~iL~~~~~-~l~~D~~l~~h~~~L~~~I--r---~~ 305 (394)
T 3txn_A 235 QSDD-VNQLVSGKLAITY-SGRDIDAMKSVAEAS-HKRSLADFQAALKEYKK-ELAEDVIVQAHLGTLYDTM--L---EQ 305 (394)
T ss_dssp CGGG-HHHHHHSHHHHTT-CSHHHHHHHHHHHHH-HTTCHHHHHHHHHHSTT-TTTTSHHHHHHHHHHHHHH--H---HH
T ss_pred CHHH-HHHHhcccccccc-CCccHHHHHHHHHHH-HhCCHHHHHHHHHHHHH-HHhcChHHHHHHHHHHHHH--H---HH
Confidence 2111 11111 1111111 235555566666665 46677777777776533 3455665432222222111 1 12
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 047840 357 VWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGM 400 (445)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 400 (445)
.+.++. .|-....+..++..+.- ..++++..+.+|...|.
T Consensus 306 ~L~~i~--~pYsrIsl~~iA~~l~l--s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 306 NLCRII--EPYSRVQVAHVAESIQL--PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp HHHHHH--TTCSEEEHHHHHHHHTC--CHHHHHHHHHHHHHTTS
T ss_pred HHHHHh--HhhceeeHHHHHHHHCc--CHHHHHHHHHHHHHCCC
Confidence 223332 23334455566655543 67888888888887664
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=89.03 E-value=7.3 Score=30.84 Aligned_cols=105 Identities=12% Similarity=0.147 Sum_probs=44.2
Q ss_pred HHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHHcCCChHHHHHHhccCCCCChhhHHHHHHHHHhcCCHhHHHH
Q 047840 70 SSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLS 149 (445)
Q Consensus 70 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 149 (445)
...+..+...|+.+....+.+.+..++...-...+.++.+.++.+....+.+.+..++...-...+.++.+.++.+ +..
T Consensus 37 ~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~-~~~ 115 (211)
T 3ltm_A 37 RAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDER-AVE 115 (211)
T ss_dssp HHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHH
T ss_pred HHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHH-HHH
Confidence 3333444444443333333333333444444444444555454433334444444455555555555555555432 223
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 047840 150 LFRQMQEVGMKPNESGLVSVLTACAHLGA 178 (445)
Q Consensus 150 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 178 (445)
.+..+.. .++...-...+.++...++
T Consensus 116 ~L~~~l~---d~~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 116 PLIKALK---DEDWFVRIAAAFALGEIGD 141 (211)
T ss_dssp HHHHHTT---CSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHHh---CCCHHHHHHHHHHHHHcCC
Confidence 3333322 2344444444444444443
|
| >1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=88.33 E-value=8.7 Score=31.86 Aligned_cols=204 Identities=10% Similarity=0.039 Sum_probs=94.9
Q ss_pred hhhcCCchHHHHHHHHHHhcCCCCCcc---cHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhh--HHHHHHHHHhc
Q 047840 5 YMQANFPKLSVFCYLDMLDMGFEPNNY---TFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFV--VSSLLEFYSLV 79 (445)
Q Consensus 5 ~~~~g~~~~A~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~ 79 (445)
.++.|+.+ +++.+.+.|..++.. .-...+...+..|+.+ +.+.+.+.|..++... -.+.+...+..
T Consensus 12 A~~~g~~~----~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~-----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 82 (285)
T 1wdy_A 12 AVQNEDVD----LVQQLLEGGANVNFQEEEGGWTPLHNAVQMSRED-----IVELLLRHGADPVLRKKNGATPFLLAAIA 82 (285)
T ss_dssp HHHTTCHH----HHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHH-----HHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred HHHcCCHH----HHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHH-----HHHHHHHcCCCCcccCCCCCCHHHHHHHc
Confidence 34556654 344444555444322 1123444455666665 3444455565544321 12334445567
Q ss_pred CCHHHHHHHhccCCCC---ChhhHHHHHHHHHcCCChHHHHHHhccCCCCChh------------hHHHHHHHHHhcCCH
Q 047840 80 HKMGTARALFDKSPDR---DVVTWTTMVDGYGKMGDFENARELFEKMPERNAV------------SWSAIMAAYSRISDF 144 (445)
Q Consensus 80 g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------------~~~~l~~~~~~~~~~ 144 (445)
|+.+-+..+++....+ +...++ .+...+..|+.+-+..+++.-..++.. .-...+...+..|+.
T Consensus 83 ~~~~~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~ 161 (285)
T 1wdy_A 83 GSVKLLKLFLSKGADVNECDFYGFT-AFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHV 161 (285)
T ss_dssp TCHHHHHHHHHTTCCTTCBCTTCCB-HHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCH
T ss_pred CCHHHHHHHHHcCCCCCccCcccCC-HHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCH
Confidence 8888777777765443 222222 233345567777666666654432211 001223334445665
Q ss_pred hHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhh--hhHHHHHHHccCChHHHHH
Q 047840 145 KEVLSLFRQMQEVGMKPN---ESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVIL--ATAVVDMYSKCGHVHSALS 219 (445)
Q Consensus 145 ~~a~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~ 219 (445)
+-+..+++. .|..++ ....+.+. ..+..++......+.+.+.+.|..++... -.+.+...++.|+.+-+..
T Consensus 162 ~~v~~Ll~~---~~~~~~~~~~~g~t~l~-~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ 237 (285)
T 1wdy_A 162 EVLKILLDE---MGADVNACDNMGRNALI-HALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQR 237 (285)
T ss_dssp HHHHHHHHT---SCCCTTCCCTTSCCHHH-HHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHh---cCCCCCccCCCCCCHHH-HHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHH
Confidence 544444332 133222 11122222 22334554445566666666665544321 1223344455566666655
Q ss_pred Hhh
Q 047840 220 VFE 222 (445)
Q Consensus 220 ~~~ 222 (445)
+++
T Consensus 238 Ll~ 240 (285)
T 1wdy_A 238 LLE 240 (285)
T ss_dssp HHH
T ss_pred HHh
Confidence 555
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=88.33 E-value=6 Score=29.05 Aligned_cols=75 Identities=11% Similarity=0.009 Sum_probs=48.7
Q ss_pred CCChhHHHHHHHHHHhcCC---hHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchh
Q 047840 297 EPQLEHYACVVDLLARAGM---VEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFST 371 (445)
Q Consensus 297 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 371 (445)
.|+..+--.+.-++.+..+ ..+++.+++.+.+.+........-.+.-++.+.|++++|.+..+.+++..|.+..+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 4555555555556666554 34677777777664411233444556667888888899988888888888887533
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=88.03 E-value=6.3 Score=28.94 Aligned_cols=67 Identities=6% Similarity=-0.157 Sum_probs=55.7
Q ss_pred CCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 332 GGDANVWGALLSACRIYGK---IEVGNRVWRKLAEMGIT-DFSTHVLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 332 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
.|+..+--.+..++.+..+ ..+++.+++.+...+|. .......++.++.+.|++++|.++.+.+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 6788888888888888765 46889999999998885 4456678899999999999999999998763
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=87.06 E-value=3.9 Score=29.60 Aligned_cols=62 Identities=19% Similarity=0.266 Sum_probs=45.5
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHH
Q 047840 244 DAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVV 307 (445)
Q Consensus 244 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 307 (445)
+.-+..+-++.+.....-|++......+.+|.+.+++..|.++|+-++.+. .+...+|..++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~--~~~~~iY~y~l 129 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVI 129 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--CCchhhHHHHH
Confidence 344566666666666778888888888888888888888888888888753 33455666665
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=85.84 E-value=16 Score=31.42 Aligned_cols=167 Identities=12% Similarity=0.069 Sum_probs=92.7
Q ss_pred HHHHHHHHHcCCChHHHHHHhccCCCCChhhHHHHHHHHHhcCCHhHHHHHH----HHHHHcCCCCCHHHHHHHHHHHHc
Q 047840 100 WTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLF----RQMQEVGMKPNESGLVSVLTACAH 175 (445)
Q Consensus 100 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~~~~~~~~p~~~~~~~l~~~~~~ 175 (445)
|.++..=|.+.+++++|++++.. -...+.+.|+...|-++- +-+.+.++++|.....-++..+..
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 44555556667777777666543 123445556665554443 444556677777777777776665
Q ss_pred cCChhH-HHHHHHHH----HHcC--CCCchhhhhHHHHHHHccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCChHHH
Q 047840 176 LGAITQ-GLWVHSYA----KRYH--LEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKS 248 (445)
Q Consensus 176 ~~~~~~-a~~~~~~~----~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 248 (445)
...-+- -..+.+++ .+.| ...|+.....+...|.+.+++.+|+..|---.++++..+..++-.+...+...
T Consensus 107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~-- 184 (336)
T 3lpz_A 107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESH-- 184 (336)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGG--
T ss_pred CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCc--
Confidence 543221 12233333 3333 34567788888999999999999998874322222345544444333333211
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHH
Q 047840 249 LELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSA 292 (445)
Q Consensus 249 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (445)
.++.+.-..++. |...++...|...++...+
T Consensus 185 ------------e~dlfiaRaVL~-yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 185 ------------TAPLYCARAVLP-YLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp ------------GHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHH
T ss_pred ------------cHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHH
Confidence 122222333333 4445788888877766554
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.26 E-value=22 Score=32.31 Aligned_cols=97 Identities=9% Similarity=0.092 Sum_probs=70.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHhhcCCcHHHHHHHHHHhHHh-hCCCCC----hh
Q 047840 232 WNAMISGVAMNGDAKKSLELFDRMVKS--GTQPT---ETTFVAVLTTCTHAKMVRDGLNLFENMSAV-YGVEPQ----LE 301 (445)
Q Consensus 232 ~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~----~~ 301 (445)
...|...+...|++.+|.+++..+... |..+. ...+...++.|...+++..|..++..+... ....++ ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 456788899999999999999998643 22221 235666777889999999999999987532 122222 23
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhc
Q 047840 302 HYACVVDLLARAGMVEEAEKFIEEKMG 328 (445)
Q Consensus 302 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 328 (445)
.+...+..+...+++.+|.+.|.++.+
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 456677778888999999888877643
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.59 E-value=12 Score=33.86 Aligned_cols=94 Identities=11% Similarity=0.040 Sum_probs=53.5
Q ss_pred hhhHHHHHHHccCChHHHHHHhhcCCCC------ChhhHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCCCHHHHH--
Q 047840 200 LATAVVDMYSKCGHVHSALSVFEGISNK------DAGAWNAMISGVAMNGDAKKSLELFDRMVKS---GTQPTETTFV-- 268 (445)
Q Consensus 200 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~~p~~~~~~-- 268 (445)
+...+...|.+.|+++.|.+.|.++... -...+...+..+...+++..+...+.+.... +..|+...-.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 4556777777777777777777665431 2335556666677777777777777765432 2222222111
Q ss_pred HHHHHhhcCCcHHHHHHHHHHhHHh
Q 047840 269 AVLTTCTHAKMVRDGLNLFENMSAV 293 (445)
Q Consensus 269 ~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (445)
.-...+...+++..|...|-+....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 1122244566677776666665543
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=84.33 E-value=4.5 Score=33.46 Aligned_cols=113 Identities=11% Similarity=0.075 Sum_probs=74.4
Q ss_pred HHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCH----HHHHHHHHHHHH
Q 047840 272 TTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDA----NVWGALLSACRI 347 (445)
Q Consensus 272 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~ 347 (445)
....+.|++++++.....-.+ .-+.|...-..|+..+|-.|++++|.+-++...+.. |+. ..|..+|.+-
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR--~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~--p~~~~~a~~yr~lI~aE-- 78 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF--PEYLPGASQLRHLVKAA-- 78 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHH--
T ss_pred HHHHhCCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHHHHHH--
Confidence 456788999999998888776 345677777889999999999999999888876544 443 3344444432
Q ss_pred cCChHHHHHHHHHHHH--hCC---CCchhH-HHHHHH--HHHcCChHHHHHHHHHHHhc
Q 047840 348 YGKIEVGNRVWRKLAE--MGI---TDFSTH-VLSYNI--YKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 348 ~g~~~~a~~~~~~~~~--~~~---~~~~~~-~~l~~~--~~~~g~~~~A~~~~~~m~~~ 398 (445)
..=.++.. ..| ..+..+ ..++.+ ....|+.++|.++.....+.
T Consensus 79 --------~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 79 --------QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp --------HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 11122222 112 223333 344444 44569999999999888654
|
| >3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=83.17 E-value=12 Score=31.50 Aligned_cols=207 Identities=10% Similarity=-0.007 Sum_probs=108.8
Q ss_pred hcCCchHHHHHHHHHHhcCC-CCCcccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHH
Q 047840 7 QANFPKLSVFCYLDMLDMGF-EPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTA 85 (445)
Q Consensus 7 ~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 85 (445)
+..+..+..+++.. .++ .+|..-.+ .+...+..|+.+ .+.. +.+.|..++...-.+.+...+..|+.+-+
T Consensus 8 ~~~~~~~v~~lL~~---~~~~~~d~~g~t-~L~~A~~~g~~~-~v~~----Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v 78 (285)
T 3kea_A 8 NTWKSKQLKSFLSS---KDTFKADVHGHS-ASYYAIADNNVR-LVCT----LLNAGALKNLLENEFPLHQAATLEDTKIV 78 (285)
T ss_dssp GGCCHHHHHHHHHS---TTTTCCCTTSCC-HHHHHHHTTCHH-HHHH----HHHTTGGGSCCTTCCHHHHHTTSSSCHHH
T ss_pred HhcCHHHHHHHHHh---CCCCccCCCCCC-HHHHHHHcCCHH-HHHH----HHhCCCCCCCCCCCCHHHHHHHcCCHHHH
Confidence 44555555555543 232 12333333 344455677777 4444 44556544443333455666788999988
Q ss_pred HHHhccCCCC---ChhhHHHHHHHHHcCCChHHHHHHhccCCCC---ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCC
Q 047840 86 RALFDKSPDR---DVVTWTTMVDGYGKMGDFENARELFEKMPER---NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGM 159 (445)
Q Consensus 86 ~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 159 (445)
..+++....+ +...++. +...+..|+.+-+..+++.-..+ +..-+...+...+..|+.+-+..+ .+.|.
T Consensus 79 ~~Ll~~ga~~~~~d~~g~t~-L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~L----l~~g~ 153 (285)
T 3kea_A 79 KILLFSGLDDSQFDDKGNTA-LYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYF----LSEIP 153 (285)
T ss_dssp HHHHHTTCCTTCCCTTSCCH-HHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHH----HTTSC
T ss_pred HHHHHCCCCCCCcCCCCCcH-HHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHH----HhCCC
Confidence 8888865543 2222333 34445678888777777764332 322323444555667776544443 34443
Q ss_pred CC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCCCC
Q 047840 160 KP-NESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKD 228 (445)
Q Consensus 160 ~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 228 (445)
.+ +...-.+.+...+..|+.+-+..+++.-..... .+..-.+..+...+..|+.+-+.-+++.-..++
T Consensus 154 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~-~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~ 222 (285)
T 3kea_A 154 STFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNT-NNSLLFIPDIKLAIDNKDIEMLQALFKYDINIY 222 (285)
T ss_dssp TTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCT-TCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCST
T ss_pred ccccccCCccHHHHHHHcChHHHHHHHHHcCCCCCc-ccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 33 221223344455677787766666655433321 222222333455566788877777776544443
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=82.89 E-value=15 Score=28.65 Aligned_cols=28 Identities=7% Similarity=0.176 Sum_probs=10.6
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 047840 228 DAGAWNAMISGVAMNGDAKKSLELFDRMV 256 (445)
Q Consensus 228 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 256 (445)
+...-...+.++...|. .++...+..+.
T Consensus 151 ~~~vr~~A~~aL~~~~~-~~~~~~L~~~l 178 (201)
T 3ltj_A 151 DGWVRQSAADALGEIGG-ERVRAAMEKLA 178 (201)
T ss_dssp SHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCc-hhHHHHHHHHH
Confidence 33333333344444433 23333333333
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=82.47 E-value=3.9 Score=33.81 Aligned_cols=59 Identities=14% Similarity=0.135 Sum_probs=51.8
Q ss_pred HHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 047840 308 DLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT 367 (445)
Q Consensus 308 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 367 (445)
....+.|++++|++....-++.. +-|...-..+++.++-.|+++.|..-++-..+++|.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 34567899999999998888777 778888888999999999999999999999999987
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.63 E-value=5.9 Score=35.84 Aligned_cols=61 Identities=3% Similarity=-0.085 Sum_probs=31.5
Q ss_pred HHHHHHHHhhcCCcHHHHHHHHHHhHHhh-CCCCChhHHHHHHHHHHhcCChHHHHHHHHHH
Q 047840 266 TFVAVLTTCTHAKMVRDGLNLFENMSAVY-GVEPQLEHYACVVDLLARAGMVEEAEKFIEEK 326 (445)
Q Consensus 266 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 326 (445)
+...+...|.+.|+++.|.+++.++.... +...-...+-..+..+...+++..+...+.++
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 34445555556666666666666655431 11111334444555555566666666555554
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=81.28 E-value=26 Score=30.22 Aligned_cols=168 Identities=15% Similarity=0.094 Sum_probs=102.5
Q ss_pred hhhhHHHHHHHccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCChHHHHHHH----HHHHHcCCCCCHHHHHHHHHHh
Q 047840 199 ILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELF----DRMVKSGTQPTETTFVAVLTTC 274 (445)
Q Consensus 199 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~m~~~~~~p~~~~~~~l~~~~ 274 (445)
.+|.++..=|.+.+++++|.+++.. -...+.+.|+...|-++. +-..+.++++|......++..+
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3455566668888999999887643 234566677776665554 5556678888988888787776
Q ss_pred hcCCc--HHHHHHHHHHhHH---hhC--CCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 047840 275 THAKM--VRDGLNLFENMSA---VYG--VEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRI 347 (445)
Q Consensus 275 ~~~~~--~~~a~~~~~~~~~---~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 347 (445)
..... .+. ..+.+.+.+ .+| -.-++.....+...|.+.+++.+|...|- . +-.+.+..+..++.-+..
T Consensus 105 ~~~~~~~p~r-~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~ 179 (336)
T 3lpz_A 105 RLFQPGEPVR-KRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYK 179 (336)
T ss_dssp TTSCTTCHHH-HHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHH
T ss_pred HhCCCCCcHH-HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHH
Confidence 65443 211 222222221 113 22356667788889999999999988873 2 423344566555544444
Q ss_pred cCChHHHHHHHHHHHHhCCCCchhHH-HHHHHHHHcCChHHHHHHHHHHHh
Q 047840 348 YGKIEVGNRVWRKLAEMGITDFSTHV-LSYNIYKEAGWDMEANKVRKLISE 397 (445)
Q Consensus 348 ~g~~~~a~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~m~~ 397 (445)
.+. |.....|. ..+--|.-.++...|..+++...+
T Consensus 180 ~~~---------------~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 180 QDE---------------SHTAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp TSC---------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hcC---------------CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 332 22222232 234457788899999887777654
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=80.46 E-value=11 Score=25.55 Aligned_cols=86 Identities=14% Similarity=0.135 Sum_probs=60.3
Q ss_pred CChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 047840 177 GAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMV 256 (445)
Q Consensus 177 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 256 (445)
...++|..+-+.+...+. ...+--.-+..+.+.|++++|..+.+.+.-||...|.++.. .+.|-.+++...+.++.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 356677777777776653 22222233445788899999999999999899998887754 47788888888887777
Q ss_pred HcCCCCCHHHH
Q 047840 257 KSGTQPTETTF 267 (445)
Q Consensus 257 ~~~~~p~~~~~ 267 (445)
..| .|....|
T Consensus 96 ~sg-~p~~q~F 105 (115)
T 2uwj_G 96 GSS-DPALADF 105 (115)
T ss_dssp TCS-SHHHHHH
T ss_pred hCC-CHHHHHH
Confidence 765 3444444
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 445 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 0.003 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.3 bits (85), Expect = 0.003
Identities = 39/289 (13%), Positives = 76/289 (26%), Gaps = 8/289 (2%)
Query: 109 KMGDFENARELFEKMPER---NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESG 165
+ GDFE A ++ + N + + + + + P +
Sbjct: 11 QAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK--QNPLLAE 68
Query: 166 LVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS 225
S L + + Y L+ + I + +
Sbjct: 69 AYSNL-GNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSA 127
Query: 226 NKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLN 285
+ + S + A LE + VA +
Sbjct: 128 LQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWL 187
Query: 286 LFENMSAVYGVEPQ-LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSA 344
+ ++P L+ Y + ++L A + + A + L A V G L
Sbjct: 188 AIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYL-RALSLSPNHAVVHGNLACV 246
Query: 345 CRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRK 393
G I++ +R+ E+ + N KE G EA
Sbjct: 247 YYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYN 295
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 445 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.94 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.92 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.72 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.72 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.38 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.31 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.29 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.28 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.28 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.26 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.25 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.22 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.14 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.13 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.93 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.93 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.91 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.88 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.86 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.84 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.81 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.8 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.8 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.76 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.75 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.73 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.72 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.62 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.6 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.55 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.53 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.53 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.51 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.49 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.48 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.4 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.34 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.31 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.27 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.22 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.2 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.15 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.12 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.09 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.05 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.97 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.95 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.95 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.82 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.79 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.67 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.6 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.58 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.31 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 97.26 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.82 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.41 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.38 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.16 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 95.78 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 95.11 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 94.17 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 90.3 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 86.23 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=5.9e-24 Score=191.90 Aligned_cols=373 Identities=10% Similarity=0.033 Sum_probs=305.9
Q ss_pred hchhhcCCchHHHHHHHHHHhcCCCCCcccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCH
Q 047840 3 RGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKM 82 (445)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (445)
..+.+.|++++|+..|+++.+.. +-+...+..+...+...|+++ .|...++.+.+.. +.+..++..+..+|...|++
T Consensus 7 ~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~-~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 7 HREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLD-RSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhccc
Confidence 34678999999999999998754 224667888888899999999 9999999998865 34567899999999999999
Q ss_pred HHHHHHhccCCC---CChhhHHHHHHHHHcCCChHHHHHHhccCC---CCChhhHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 047840 83 GTARALFDKSPD---RDVVTWTTMVDGYGKMGDFENARELFEKMP---ERNAVSWSAIMAAYSRISDFKEVLSLFRQMQE 156 (445)
Q Consensus 83 ~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 156 (445)
++|...+..... .+...+..........+....+........ .................+....+...+.....
T Consensus 84 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (388)
T d1w3ba_ 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhc
Confidence 999999987654 233344444444444455444444433332 23455566667777888899999998888876
Q ss_pred cCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCC---CChhhHH
Q 047840 157 VGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN---KDAGAWN 233 (445)
Q Consensus 157 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~ 233 (445)
.. +-+...+..+...+...|+++.|...+++..+.. +.+...+..+...+...|++++|...+++... .+...+.
T Consensus 164 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 241 (388)
T d1w3ba_ 164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG 241 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHH
T ss_pred cC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHH
Confidence 53 3367788888899999999999999999998875 55677888899999999999999999987643 4667788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhc
Q 047840 234 AMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARA 313 (445)
Q Consensus 234 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 313 (445)
.+...+.+.|++++|+..|++..+... -+..++..+...+...|++++|...++..... .+.+...+..+...+...
T Consensus 242 ~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~ 318 (388)
T d1w3ba_ 242 NLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc--CCccchhhhHHHHHHHHC
Confidence 889999999999999999999988632 35678888999999999999999999998864 456678888899999999
Q ss_pred CChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCC
Q 047840 314 GMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGW 384 (445)
Q Consensus 314 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 384 (445)
|++++|.+.|++.++.. +.+..++..+..++...|++++|+..|+++++.+|+++.++..++.+|.+.|+
T Consensus 319 ~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 319 GNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 99999999999998766 56788899999999999999999999999999999999999999999998886
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=6.3e-22 Score=178.43 Aligned_cols=355 Identities=12% Similarity=0.062 Sum_probs=297.0
Q ss_pred HHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHhccCCC--C-ChhhHHHHHHHHHcCCC
Q 047840 36 LIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPD--R-DVVTWTTMVDGYGKMGD 112 (445)
Q Consensus 36 ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~ 112 (445)
+...+.+.|+++ .|...++.+.+.. +-+...+..+..+|.+.|++++|...|+++.+ | +..+|..+..++.+.|+
T Consensus 5 la~~~~~~G~~~-~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 5 LAHREYQAGDFE-AAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHH-HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHH-HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcc
Confidence 345677889999 9999999998864 34677888999999999999999999998754 3 56789999999999999
Q ss_pred hHHHHHHhccCCC---CChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHH
Q 047840 113 FENARELFEKMPE---RNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYA 189 (445)
Q Consensus 113 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 189 (445)
+++|...+..... .+...+..........+....+........... .................+....+...+...
T Consensus 83 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHh
Confidence 9999999988764 344455556666667777777777776665543 345555666667777888888888888888
Q ss_pred HHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 047840 190 KRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN---KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETT 266 (445)
Q Consensus 190 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 266 (445)
.... +.+...+..+...+...|+++.|...+++... .+..+|..+...+...|++++|+..+++....+ +.+...
T Consensus 162 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 239 (388)
T d1w3ba_ 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVV 239 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHH
T ss_pred hccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHH
Confidence 7764 45667888889999999999999999986543 466788999999999999999999999998874 346777
Q ss_pred HHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 047840 267 FVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACR 346 (445)
Q Consensus 267 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 346 (445)
+..+...+.+.|++++|...|+++.+. .+.+...+..+..++...|++++|.+.++...... +.+...+..+...+.
T Consensus 240 ~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 316 (388)
T d1w3ba_ 240 HGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHH
Confidence 888888999999999999999999864 23457788899999999999999999999988766 778899999999999
Q ss_pred HcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 347 IYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 347 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
..|++++|+..|+++++..|+++.++..++.+|.+.|++++|.+.+++..+.
T Consensus 317 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 368 (388)
T d1w3ba_ 317 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999988753
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=7.3e-16 Score=134.88 Aligned_cols=244 Identities=10% Similarity=-0.038 Sum_probs=173.7
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHcc
Q 047840 132 SAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKC 211 (445)
Q Consensus 132 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 211 (445)
-.....+.+.|++++|+..|++..+.. +-+..+|..+..++...|++++|...+.++.+.. |-+...+..+..+|...
T Consensus 23 ~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~ 100 (323)
T d1fcha_ 23 FEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNE 100 (323)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccc
Confidence 345667888999999999999988854 2257788888888889999999999998888775 44566777777778888
Q ss_pred CChHHHHHHhhcCCCCChh---hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHH
Q 047840 212 GHVHSALSVFEGISNKDAG---AWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFE 288 (445)
Q Consensus 212 g~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 288 (445)
|++++|.+.+++....++. .+....... . ..+.......+..+...+...++...+.
T Consensus 101 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~-~-------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 160 (323)
T d1fcha_ 101 SLQRQACEILRDWLRYTPAYAHLVTPAEEGA-G-------------------GAGLGPSKRILGSLLSDSLFLEVKELFL 160 (323)
T ss_dssp TCHHHHHHHHHHHHHTSTTTGGGCC-----------------------------------CTTHHHHHHHHHHHHHHHHH
T ss_pred ccccccccchhhHHHhccchHHHHHhhhhhh-h-------------------hcccccchhhHHHHHHhhHHHHHHHHHH
Confidence 8888887777655322111 000000000 0 0000001111122233455677777777
Q ss_pred HhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 047840 289 NMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITD 368 (445)
Q Consensus 289 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 368 (445)
.......-.++...+..+...+...|++++|...+++..... +.+..+|..+...+...|++++|++.|+++++..|.+
T Consensus 161 ~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 239 (323)
T d1fcha_ 161 AAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGY 239 (323)
T ss_dssp HHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHhhcc
Confidence 776552334456677788888889999999999999887665 5567888889999999999999999999999999998
Q ss_pred chhHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 369 FSTHVLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 369 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
+.++..++.+|.+.|++++|.+.|++..+.
T Consensus 240 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 269 (323)
T d1fcha_ 240 IRSRYNLGISCINLGAHREAVEHFLEALNM 269 (323)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 888999999999999999999988887653
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=1.7e-15 Score=132.57 Aligned_cols=268 Identities=13% Similarity=0.025 Sum_probs=200.8
Q ss_pred HHHHHHHHHcCCChHHHHHHhccCCC--C-ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 047840 100 WTTMVDGYGKMGDFENARELFEKMPE--R-NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHL 176 (445)
Q Consensus 100 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 176 (445)
.-.....+.+.|++++|...|+++.+ | +..+|..+..++...|++++|...|.+..+.. +-+...+..+...+...
T Consensus 22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~ 100 (323)
T d1fcha_ 22 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNE 100 (323)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccc
Confidence 33567778999999999999999864 4 57789999999999999999999999998754 23678888899999999
Q ss_pred CChhHHHHHHHHHHHcCCCCchh-hhhHHHHHHHccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 047840 177 GAITQGLWVHSYAKRYHLEKNVI-LATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRM 255 (445)
Q Consensus 177 ~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 255 (445)
|++++|...++.+.... |+.. ......... .. .+.......+..+...+.+.+|.+.+.+.
T Consensus 101 ~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~-~~---------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~a 162 (323)
T d1fcha_ 101 SLQRQACEILRDWLRYT--PAYAHLVTPAEEGA-GG---------------AGLGPSKRILGSLLSDSLFLEVKELFLAA 162 (323)
T ss_dssp TCHHHHHHHHHHHHHTS--TTTGGGCC-------------------------------CTTHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccchhhHHHhc--cchHHHHHhhhhhh-hh---------------cccccchhhHHHHHHhhHHHHHHHHHHHH
Confidence 99999999999998764 2221 111110000 00 00111111222334556778888888887
Q ss_pred HHcCC-CCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCC
Q 047840 256 VKSGT-QPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGD 334 (445)
Q Consensus 256 ~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 334 (445)
..... .++...+..+...+...|++++|...++..... .+-+...|..+..+|...|++++|.+.|++.++.. +.+
T Consensus 163 l~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~ 239 (323)
T d1fcha_ 163 VRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGY 239 (323)
T ss_dssp HHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHhhcccccccchhhHHHHHHHHHHhhhhccccccccc--ccccccchhhhhhcccccccchhHHHHHHHHHHHh-hcc
Confidence 76532 345677888888899999999999999999864 23357788899999999999999999999988765 567
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCch-----------hHHHHHHHHHHcCChHHHH
Q 047840 335 ANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFS-----------THVLSYNIYKEAGWDMEAN 389 (445)
Q Consensus 335 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----------~~~~l~~~~~~~g~~~~A~ 389 (445)
..+|..++.+|.+.|++++|++.|+++++..|.+.. .+..+..++...|+.+.+.
T Consensus 240 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~ 305 (323)
T d1fcha_ 240 IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 305 (323)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 889999999999999999999999999998876544 3445666777777765444
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.38 E-value=1.7e-10 Score=101.30 Aligned_cols=263 Identities=10% Similarity=-0.012 Sum_probs=159.1
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHccCChhHHHHHHHHHHHcCC--C---CchhhhhHHH
Q 047840 135 MAAYSRISDFKEVLSLFRQMQEVGMKPN----ESGLVSVLTACAHLGAITQGLWVHSYAKRYHL--E---KNVILATAVV 205 (445)
Q Consensus 135 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~---~~~~~~~~l~ 205 (445)
...+...|++++|++++++..+.....+ ...+..+...+...|++++|...+++..+... . .....+..+.
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 98 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 98 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 4455666777777777776665321111 12445556666677777777777766654211 0 1123344555
Q ss_pred HHHHccCChHHHHHHhhcCCC-------C----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC----CCCCHHHHHHH
Q 047840 206 DMYSKCGHVHSALSVFEGISN-------K----DAGAWNAMISGVAMNGDAKKSLELFDRMVKSG----TQPTETTFVAV 270 (445)
Q Consensus 206 ~~~~~~g~~~~a~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~----~~p~~~~~~~l 270 (445)
..+...|++..+...+.+... + ....+..+...+...|+++.+...+.+..... ......++...
T Consensus 99 ~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (366)
T d1hz4a_ 99 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 178 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 566677777776666654321 1 11244455667777888888888887776532 12223344455
Q ss_pred HHHhhcCCcHHHHHHHHHHhHHhhCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCC---CHHHHHHHH
Q 047840 271 LTTCTHAKMVRDGLNLFENMSAVYGVEPQ-----LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGG---DANVWGALL 342 (445)
Q Consensus 271 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~ 342 (445)
...+...++...+...+........-..+ ...+..+...+...|++++|...+.......... ....+..+.
T Consensus 179 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la 258 (366)
T d1hz4a_ 179 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 258 (366)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 55566777777777777665543221111 2234455566777888888888888766543221 234566677
Q ss_pred HHHHHcCChHHHHHHHHHHHHh------CCCCchhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 047840 343 SACRIYGKIEVGNRVWRKLAEM------GITDFSTHVLSYNIYKEAGWDMEANKVRKLISE 397 (445)
Q Consensus 343 ~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 397 (445)
.++...|++++|...+++++.. .|....++..++.+|.+.|++++|.+.+++..+
T Consensus 259 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 259 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7888888888888888887652 223455677788888888888888888877654
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=1.1e-10 Score=100.50 Aligned_cols=214 Identities=11% Similarity=0.077 Sum_probs=119.0
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC-ChhHHHHHHHHHHHcCCCCchhhhhHHHHHH
Q 047840 130 SWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLG-AITQGLWVHSYAKRYHLEKNVILATAVVDMY 208 (445)
Q Consensus 130 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 208 (445)
.|+.+...+.+.+.+++|+++++++++.+ +-+...|+....++...| ++++|...++.+.+.. +-+..
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~--------- 113 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQ--------- 113 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHH---------
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-Hhhhh---------
Confidence 45555555666666666666666666642 113444555555555444 3555555555555543 22334
Q ss_pred HccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHH
Q 047840 209 SKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFE 288 (445)
Q Consensus 209 ~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 288 (445)
+|..+...+.+.|++++|++.++++.+... -+...|..+...+.+.|++++|...++
T Consensus 114 ----------------------a~~~~~~~~~~l~~~~eAl~~~~kal~~dp-~n~~a~~~~~~~~~~~~~~~~Al~~~~ 170 (315)
T d2h6fa1 114 ----------------------VWHHRRVLVEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVD 170 (315)
T ss_dssp ----------------------HHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHH
T ss_pred ----------------------HHHHHhHHHHhhccHHHHHHHHhhhhhhhh-cchHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 444455555555566666666666655422 245556666666666666666666666
Q ss_pred HhHHhhCCCCChhHHHHHHHHHHhcCC------hHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 047840 289 NMSAVYGVEPQLEHYACVVDLLARAGM------VEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLA 362 (445)
Q Consensus 289 ~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 362 (445)
.+.+. . +.+...|+.+..++.+.+. +++|.+.+...++.. +.+...|+.+...+.. ...+++.+.++...
T Consensus 171 ~al~~-~-p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~ 246 (315)
T d2h6fa1 171 QLLKE-D-VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQD-RGLSKYPNLLNQLL 246 (315)
T ss_dssp HHHHH-C-TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTT-TCGGGCHHHHHHHH
T ss_pred HHHHH-C-CccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHh-cChHHHHHHHHHHH
Confidence 66643 1 2234455554444444443 456777777766655 5566777666655443 34567777777777
Q ss_pred HhCCC--CchhHHHHHHHHHH
Q 047840 363 EMGIT--DFSTHVLSYNIYKE 381 (445)
Q Consensus 363 ~~~~~--~~~~~~~l~~~~~~ 381 (445)
+..|. ++..+..++.+|..
T Consensus 247 ~l~~~~~~~~~~~~l~~~y~~ 267 (315)
T d2h6fa1 247 DLQPSHSSPYLIAFLVDIYED 267 (315)
T ss_dssp HHTTTCCCHHHHHHHHHHHHH
T ss_pred HhCCCcCCHHHHHHHHHHHHH
Confidence 76665 33344455555544
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.29 E-value=2.4e-11 Score=101.89 Aligned_cols=225 Identities=8% Similarity=-0.019 Sum_probs=128.8
Q ss_pred CHhHHHHHHHHHHHcCC-CC--CHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHH
Q 047840 143 DFKEVLSLFRQMQEVGM-KP--NESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALS 219 (445)
Q Consensus 143 ~~~~a~~~~~~~~~~~~-~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 219 (445)
+.+.++.-+++...... .+ ...++..+..+|.+.|++++|...|++.++.. |.++.+++.+..+|.+.|++++|..
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~ 92 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYE 92 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhh
Confidence 34445555555544311 11 12355556666777777777777777777664 4456667777777777777777777
Q ss_pred HhhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCC
Q 047840 220 VFEGISN---KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGV 296 (445)
Q Consensus 220 ~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 296 (445)
.|+++.+ .+..++..+..++...|++++|+..|++..+... .+......+..++.+.+..+.+..+.......
T Consensus 93 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 168 (259)
T d1xnfa_ 93 AFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP-NDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS--- 168 (259)
T ss_dssp HHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS---
T ss_pred hhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc---
Confidence 7766543 2455677777788888888888888888877532 23444333444444555555555555444432
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHhcC--CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHH
Q 047840 297 EPQLEHYACVVDLLARAGMVEEAEKFIEEKMGG--LGGG-DANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHV 373 (445)
Q Consensus 297 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 373 (445)
.++...+. ++..+................... ...| ...+|..+...+...|++++|...|++++...|.+...+.
T Consensus 169 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 247 (259)
T d1xnfa_ 169 DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHR 247 (259)
T ss_dssp CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHH
T ss_pred chhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 22222222 222222221111111111111110 0012 2346777888899999999999999999999988754444
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.28 E-value=7.1e-10 Score=95.25 Aligned_cols=220 Identities=12% Similarity=0.052 Sum_probs=135.4
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--------------cCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHc
Q 047840 145 KEVLSLFRQMQEVGMKPNESGLVSVLTACAH--------------LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSK 210 (445)
Q Consensus 145 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~--------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 210 (445)
+.+..+|+++... ++-++..|...+..+.. .+..++|..+|++..+...+.+...+...+..+.+
T Consensus 33 ~Rv~~vyerAl~~-~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~ 111 (308)
T d2onda1 33 KRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 4455666666554 23344555444433322 23446677777777765445555666667777777
Q ss_pred cCChHHHHHHhhcCCCC---C-hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-hhcCCcHHHHHH
Q 047840 211 CGHVHSALSVFEGISNK---D-AGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTT-CTHAKMVRDGLN 285 (445)
Q Consensus 211 ~g~~~~a~~~~~~~~~~---~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~~~~~~a~~ 285 (445)
.|+++.|..+|+++... + ...|...+..+.+.|+.+.|.++|+++.+.+.. +...|...... +...|+.+.|..
T Consensus 112 ~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~ 190 (308)
T d2onda1 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHH
Confidence 77777777777765431 2 235667777777777777777777777665332 22333322222 334567777777
Q ss_pred HHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCC-CCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 047840 286 LFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGL-GGGD--ANVWGALLSACRIYGKIEVGNRVWRKLA 362 (445)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 362 (445)
+|+.+... .+.+...|...++.+.+.|++++|+.+|++.+... ..|+ ...|...+..-...|+.+.+..+++++.
T Consensus 191 i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~ 268 (308)
T d2onda1 191 IFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77777764 24446667777777777777777777777765543 2332 3467777776677777777777777777
Q ss_pred HhCCCC
Q 047840 363 EMGITD 368 (445)
Q Consensus 363 ~~~~~~ 368 (445)
+.-|..
T Consensus 269 ~~~~~~ 274 (308)
T d2onda1 269 TAFREE 274 (308)
T ss_dssp HHTTTT
T ss_pred HHCccc
Confidence 766653
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.28 E-value=1.3e-11 Score=107.76 Aligned_cols=233 Identities=9% Similarity=-0.109 Sum_probs=171.0
Q ss_pred HhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC--ChhHHHHHHHHHHHcCCCCchhhh-hHHHHHHHccCChH
Q 047840 139 SRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLG--AITQGLWVHSYAKRYHLEKNVILA-TAVVDMYSKCGHVH 215 (445)
Q Consensus 139 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~ 215 (445)
...|++++|+..++.....+ +-+...+..+..++...+ ++++|...++.+.... +++...+ ......+...+.++
T Consensus 84 ~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~ 161 (334)
T d1dcea1 84 ESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPA 161 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccH
Confidence 34556788999999988754 336667777776666655 4788999999998875 3444444 44556777889999
Q ss_pred HHHHHhhcCCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHH
Q 047840 216 SALSVFEGISNK---DAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSA 292 (445)
Q Consensus 216 ~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (445)
.|...++.+... +..+|+.+...+.+.|++++|...+++.... .|+.. .....+...+..+++...+.....
T Consensus 162 ~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~---~~~~~~~~l~~~~~a~~~~~~~l~ 236 (334)
T d1dcea1 162 EELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLKEL---ELVQNAFFTDPNDQSAWFYHRWLL 236 (334)
T ss_dssp HHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHHHH---HHHHHHHHHCSSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHHHH---HHHHHHHHhcchhHHHHHHHHHHH
Confidence 999999887763 5668888888999999988877666554432 12221 122333445556667777777765
Q ss_pred hhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhH
Q 047840 293 VYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTH 372 (445)
Q Consensus 293 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 372 (445)
.-+++...+..+...+...|+.++|...+.+..... +.+..++..++.++...|+.++|++.++++++.+|.+...|
T Consensus 237 --~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~ 313 (334)
T d1dcea1 237 --GRAEPLFRCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL 313 (334)
T ss_dssp --SCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH
T ss_pred --hCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHH
Confidence 334555566677778888899999999999987665 45667888999999999999999999999999999988888
Q ss_pred HHHHHHHHH
Q 047840 373 VLSYNIYKE 381 (445)
Q Consensus 373 ~~l~~~~~~ 381 (445)
..+...+.-
T Consensus 314 ~~L~~~~~~ 322 (334)
T d1dcea1 314 DDLRSKFLL 322 (334)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhH
Confidence 888776653
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=1.3e-10 Score=100.13 Aligned_cols=196 Identities=5% Similarity=0.025 Sum_probs=157.1
Q ss_pred hhhHHHHHHHccCChHHHHHHhhcCCC---CChhhHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhh
Q 047840 200 LATAVVDMYSKCGHVHSALSVFEGISN---KDAGAWNAMISGVAMNG-DAKKSLELFDRMVKSGTQPTETTFVAVLTTCT 275 (445)
Q Consensus 200 ~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 275 (445)
+++.+...+.+.+.+++|+.+++++.+ .+..+|+....++...| ++++|+..+++..+.... +..+|..+...+.
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~~~~ 123 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLVE 123 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhHHHH
Confidence 444555556666777777777766543 24556777777777766 489999999999887433 6888999999999
Q ss_pred cCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCC-----
Q 047840 276 HAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGK----- 350 (445)
Q Consensus 276 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----- 350 (445)
+.|++++|+..++.+.+. -+.+...|..+...+...|++++|++.++.+++.+ +.+...|+.+...+...+.
T Consensus 124 ~l~~~~eAl~~~~kal~~--dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~~~ 200 (315)
T d2h6fa1 124 WLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRA 200 (315)
T ss_dssp HHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred hhccHHHHHHHHhhhhhh--hhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccchhh
Confidence 999999999999999974 24458899999999999999999999999999887 6788899988888877665
Q ss_pred -hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 047840 351 -IEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGM 400 (445)
Q Consensus 351 -~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 400 (445)
+++|++.+.++++..|.+..++..++..+...| .+++.+.++...+...
T Consensus 201 ~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~ 250 (315)
T d2h6fa1 201 VLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQP 250 (315)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTT
T ss_pred hhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCC
Confidence 578999999999999999999999888766544 5778888887766433
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.25 E-value=9.4e-10 Score=96.39 Aligned_cols=285 Identities=12% Similarity=0.006 Sum_probs=170.7
Q ss_pred HHHcCCChHHHHHHhccCCC--CC------hhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCC-CCC----HHHHHHHHHH
Q 047840 106 GYGKMGDFENARELFEKMPE--RN------AVSWSAIMAAYSRISDFKEVLSLFRQMQEVGM-KPN----ESGLVSVLTA 172 (445)
Q Consensus 106 ~~~~~g~~~~A~~~~~~~~~--~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~----~~~~~~l~~~ 172 (445)
.+...|++++|++++++..+ |+ ..++..+...+...|++++|+..|++...... .++ ...+..+...
T Consensus 21 ~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 100 (366)
T d1hz4a_ 21 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 100 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 34445555555555544321 11 22455556666677777777777766543210 111 2234445556
Q ss_pred HHccCChhHHHHHHHHHHHc----CCCC---chhhhhHHHHHHHccCChHHHHHHhhcCCC----C----ChhhHHHHHH
Q 047840 173 CAHLGAITQGLWVHSYAKRY----HLEK---NVILATAVVDMYSKCGHVHSALSVFEGISN----K----DAGAWNAMIS 237 (445)
Q Consensus 173 ~~~~~~~~~a~~~~~~~~~~----~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~----~~~~~~~l~~ 237 (445)
+...|++..+...+...... +.+. ....+..+...+...|+++.+...+..... . ...++.....
T Consensus 101 ~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (366)
T d1hz4a_ 101 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 180 (366)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence 66677777777666665432 1111 112344556667777777777777654432 1 2234455566
Q ss_pred HHHhcCChHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCC--ChhHHHHHHHH
Q 047840 238 GVAMNGDAKKSLELFDRMVKS----GTQPT--ETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP--QLEHYACVVDL 309 (445)
Q Consensus 238 ~~~~~~~~~~a~~~~~~m~~~----~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~ 309 (445)
.+...++...+...+.+.... +..+. ...+......+...|+++.|...+........-.+ ....+..+..+
T Consensus 181 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~ 260 (366)
T d1hz4a_ 181 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA 260 (366)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 677788888888887766442 11111 22345556667888999999999988774311111 13345567888
Q ss_pred HHhcCChHHHHHHHHHHhc----CCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--Cc-------hhHHHH
Q 047840 310 LARAGMVEEAEKFIEEKMG----GLGGGD-ANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT--DF-------STHVLS 375 (445)
Q Consensus 310 ~~~~g~~~~A~~~~~~~~~----~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~-------~~~~~l 375 (445)
+...|++++|...+++... .+..|+ ..++..+...|...|++++|.+.+++++++.+. .. .....+
T Consensus 261 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~ 340 (366)
T d1hz4a_ 261 QILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQ 340 (366)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHH
Confidence 9999999999999988753 233333 457888889999999999999999999885432 11 223344
Q ss_pred HHHHHHcCChHHHHH
Q 047840 376 YNIYKEAGWDMEANK 390 (445)
Q Consensus 376 ~~~~~~~g~~~~A~~ 390 (445)
...+...++.+++..
T Consensus 341 ~~~l~~~~~l~e~e~ 355 (366)
T d1hz4a_ 341 LRQLIQLNTLPELEQ 355 (366)
T ss_dssp HHHHHHTTCSCHHHH
T ss_pred HHHHHhcCCChHHHH
Confidence 555666677666654
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.22 E-value=1.8e-09 Score=92.69 Aligned_cols=215 Identities=9% Similarity=0.007 Sum_probs=161.9
Q ss_pred hHHHHHHHHHHHcCCCCchhhhhHHHHHHH--------------ccCChHHHHHHhhcCCC----CChhhHHHHHHHHHh
Q 047840 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYS--------------KCGHVHSALSVFEGISN----KDAGAWNAMISGVAM 241 (445)
Q Consensus 180 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--------------~~g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~ 241 (445)
+.+..+|++++..- +.++.+|...+..+. ..+..++|..+|++... .+...|...+..+..
T Consensus 33 ~Rv~~vyerAl~~~-~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~ 111 (308)
T d2onda1 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 34555676666542 344455544444332 22345778888876542 355678888889999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHH-HHhcCChHHHH
Q 047840 242 NGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDL-LARAGMVEEAE 320 (445)
Q Consensus 242 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~ 320 (445)
.|+++.|..+|+++...........|...+..+.+.|+.+.|.++|+.+.+. .+.+...|...+.. +...|+.+.|.
T Consensus 112 ~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~--~~~~~~~~~~~a~~e~~~~~~~~~a~ 189 (308)
T d2onda1 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred cccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhccCHHHHH
Confidence 9999999999999987644434567888899999999999999999999864 23344455444433 34468999999
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCc----hhHHHHHHHHHHcCChHHHHHHHHHHH
Q 047840 321 KFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDF----STHVLSYNIYKEAGWDMEANKVRKLIS 396 (445)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~ 396 (445)
.+|+.+++.. +.++..|...+..+...|+++.|..+|+++++..|.++ ..|...+..-...|+.+.+..+.+++.
T Consensus 190 ~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~ 268 (308)
T d2onda1 190 KIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999998765 67789999999999999999999999999999766443 367777777788899999999999886
Q ss_pred hc
Q 047840 397 ET 398 (445)
Q Consensus 397 ~~ 398 (445)
+.
T Consensus 269 ~~ 270 (308)
T d2onda1 269 TA 270 (308)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.14 E-value=3.8e-10 Score=94.38 Aligned_cols=215 Identities=9% Similarity=-0.090 Sum_probs=148.1
Q ss_pred ChhHHHHHHHHHHHcCCCC---chhhhhHHHHHHHccCChHHHHHHhhcCCC---CChhhHHHHHHHHHhcCChHHHHHH
Q 047840 178 AITQGLWVHSYAKRYHLEK---NVILATAVVDMYSKCGHVHSALSVFEGISN---KDAGAWNAMISGVAMNGDAKKSLEL 251 (445)
Q Consensus 178 ~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~ 251 (445)
+.+.++.-+++........ ...++..+..+|.+.|++++|...|++... .++.+|+.+..+|.+.|++++|+..
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~ 93 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhh
Confidence 3445555566666542211 235677788999999999999999987653 4778999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCC
Q 047840 252 FDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLG 331 (445)
Q Consensus 252 ~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 331 (445)
|+++.+.... +..++..+..++...|++++|...++...+. . +.+......+...+.+.+..+.+..+........
T Consensus 94 ~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~-~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 169 (259)
T d1xnfa_ 94 FDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQD-D-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD- 169 (259)
T ss_dssp HHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC-
T ss_pred hhHHHHHHhh-hhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh-c-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc-
Confidence 9999986432 5667888888999999999999999999875 1 2334444444445556666555555555544332
Q ss_pred CCCHHHHHHHHHHHH----HcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 332 GGDANVWGALLSACR----IYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 332 ~~~~~~~~~l~~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
++...+. ++..+. ..+..+.+...+.......|....++..++..|...|++++|.+.+++....
T Consensus 170 -~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 238 (259)
T d1xnfa_ 170 -KEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 238 (259)
T ss_dssp -CCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred -hhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 2222222 122221 1222344444444444555666667888999999999999999999988754
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.13 E-value=1.2e-10 Score=101.46 Aligned_cols=256 Identities=9% Similarity=-0.041 Sum_probs=188.1
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHH-HHHHHHHH----------HHccCChhHHHHHHHHHHHcCCCCchhh
Q 047840 132 SAIMAAYSRISDFKEVLSLFRQMQEVGMKPNES-GLVSVLTA----------CAHLGAITQGLWVHSYAKRYHLEKNVIL 200 (445)
Q Consensus 132 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~----------~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 200 (445)
..++......+..++|++++++..+. .|+.. .|+..-.. +...|++++|+.+++.+.+.. |.+...
T Consensus 33 ~~~~~~~~~~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~ 109 (334)
T d1dcea1 33 QAVFQKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGT 109 (334)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHH
Confidence 33334344444568999999998874 45543 34332222 233456788999999998875 556677
Q ss_pred hhHHHHHHHccC--ChHHHHHHhhcCCC---CChhhHHH-HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 047840 201 ATAVVDMYSKCG--HVHSALSVFEGISN---KDAGAWNA-MISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTC 274 (445)
Q Consensus 201 ~~~l~~~~~~~g--~~~~a~~~~~~~~~---~~~~~~~~-l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 274 (445)
+..+..++...+ ++++|...+.++.. ++...+.. ....+...+.+++|+..++++...+.. +...|..+...+
T Consensus 110 ~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~-~~~a~~~l~~~~ 188 (334)
T d1dcea1 110 WHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLL 188 (334)
T ss_dssp HHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHH
T ss_pred HHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCC-CHHHHHHHHHHH
Confidence 777766666655 58899999887643 34555544 446777789999999999998887543 677888888888
Q ss_pred hcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHH
Q 047840 275 THAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVG 354 (445)
Q Consensus 275 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 354 (445)
...|++++|...+...... .|+. ......+...+..+++...+....... +++...+..++..+...|+.++|
T Consensus 189 ~~~~~~~~A~~~~~~~~~~---~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a 261 (334)
T d1dcea1 189 PQLHPQPDSGPQGRLPENV---LLKE---LELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELES 261 (334)
T ss_dssp HHHSCCCCSSSCCSSCHHH---HHHH---HHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHhHHh---HHHH---HHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHH
Confidence 8889888887766665543 1221 223344566777888888888877665 56666777788888889999999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 355 NRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
...+.+.....|.+..++..++.+|...|++++|.+.+++..+.
T Consensus 262 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l 305 (334)
T d1dcea1 262 CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 305 (334)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999998999999999999999999999999998764
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.93 E-value=1.2e-08 Score=73.23 Aligned_cols=102 Identities=10% Similarity=-0.003 Sum_probs=56.5
Q ss_pred HhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChH
Q 047840 273 TCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIE 352 (445)
Q Consensus 273 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 352 (445)
.+...|++++|+..|+++.+. -+.+...|..+..+|...|++++|+..+...++.+ +.++..|..+..++...|+++
T Consensus 12 ~~~~~g~~~eAi~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 12 KALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHhc--CCcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCHH
Confidence 344555556666655555543 12334455555555555666666666665555544 455555555666666666666
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHH
Q 047840 353 VGNRVWRKLAEMGITDFSTHVLSYN 377 (445)
Q Consensus 353 ~a~~~~~~~~~~~~~~~~~~~~l~~ 377 (445)
+|+..|+++++..|.++.++..+..
T Consensus 89 ~A~~~~~~a~~~~p~~~~~~~~l~~ 113 (117)
T d1elwa_ 89 EAKRTYEEGLKHEANNPQLKEGLQN 113 (117)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 6666666666666555555544443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.93 E-value=5.7e-09 Score=83.27 Aligned_cols=118 Identities=5% Similarity=-0.154 Sum_probs=84.0
Q ss_pred CCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHH
Q 047840 262 PTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGAL 341 (445)
Q Consensus 262 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 341 (445)
|+...+......+.+.|++++|+..|+++... -+.+...|..+..+|.+.|++++|+..|+..++.. +-+..+|..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~l 78 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 78 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHH
Confidence 56666777777788888888888888877754 13456677777788888888888888888877655 4567778888
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHc
Q 047840 342 LSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEA 382 (445)
Q Consensus 342 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 382 (445)
..+|...|++++|+..|+++++..|.+...+...+..+...
T Consensus 79 g~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~~ 119 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI 119 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 88888888888888888888877765444444444444433
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.91 E-value=1.5e-08 Score=72.67 Aligned_cols=93 Identities=9% Similarity=-0.126 Sum_probs=86.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCC
Q 047840 305 CVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGW 384 (445)
Q Consensus 305 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 384 (445)
.-...+...|++++|+..|++.++.. +.++..|..+..++...|++++|+..++++++.+|.++.+|..++.++...|+
T Consensus 8 ~~g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 8 EKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccC
Confidence 34667889999999999999999877 78899999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhc
Q 047840 385 DMEANKVRKLISET 398 (445)
Q Consensus 385 ~~~A~~~~~~m~~~ 398 (445)
+++|...+++..+.
T Consensus 87 ~~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 87 FEEAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998864
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.88 E-value=5e-08 Score=76.73 Aligned_cols=123 Identities=15% Similarity=0.038 Sum_probs=59.0
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChH
Q 047840 238 GVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVE 317 (445)
Q Consensus 238 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 317 (445)
.+...|+++.|++.|.++ .+|+..++..+..++...|++++|...|++..+. . +.+...|..+..+|.+.|+++
T Consensus 14 ~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l-d-p~~~~a~~~~g~~~~~~g~~~ 87 (192)
T d1hh8a_ 14 LAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR-D-KHLAVAYFQRGMLYYQTEKYD 87 (192)
T ss_dssp HHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHH-h-hhhhhhHHHHHHHHHhhccHH
Confidence 344455555555555432 2344445555555555555555555555555532 1 222444455555555555555
Q ss_pred HHHHHHHHHhcCCCCCC----------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 047840 318 EAEKFIEEKMGGLGGGD----------------ANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT 367 (445)
Q Consensus 318 ~A~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 367 (445)
+|.+.|++.+... +++ ..++..+..++...|++++|.+.++++++..|.
T Consensus 88 ~A~~~~~kAl~~~-~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~ 152 (192)
T d1hh8a_ 88 LAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 152 (192)
T ss_dssp HHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHhC-ccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 5555555544321 100 123334444555555555555555555554443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.86 E-value=1e-08 Score=72.82 Aligned_cols=90 Identities=10% Similarity=-0.096 Sum_probs=83.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCC
Q 047840 305 CVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGW 384 (445)
Q Consensus 305 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 384 (445)
.+...+.+.|++++|...|++.+... +-++.+|..+..++...|++++|+..|+++++.+|.++.++..++.+|...|+
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCC
Confidence 45667889999999999999998877 66899999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHH
Q 047840 385 DMEANKVRKLI 395 (445)
Q Consensus 385 ~~~A~~~~~~m 395 (445)
+++|.+.+++.
T Consensus 100 ~~~A~~~l~~~ 110 (112)
T d1hxia_ 100 ANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999875
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.84 E-value=6e-08 Score=73.85 Aligned_cols=119 Identities=8% Similarity=-0.083 Sum_probs=99.0
Q ss_pred HHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcC
Q 047840 270 VLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYG 349 (445)
Q Consensus 270 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 349 (445)
....|.+.|++++|...|+++.+. -+.+...|..+..+|...|++++|...|++.++.. +.+..+|..++.++...|
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g 92 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALG 92 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHhhhcccc--chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcC
Confidence 345677899999999999999975 24457888899999999999999999999998877 678889999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHH--HHcCChHHHHHH
Q 047840 350 KIEVGNRVWRKLAEMGITDFSTHVLSYNIY--KEAGWDMEANKV 391 (445)
Q Consensus 350 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~A~~~ 391 (445)
++++|...++++....|.++.++..+..+. ...+.+++|...
T Consensus 93 ~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 93 KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999888887776654 334456666543
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.81 E-value=1.8e-08 Score=80.22 Aligned_cols=98 Identities=6% Similarity=-0.006 Sum_probs=78.3
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCC-hhHHHH
Q 047840 227 KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ-LEHYAC 305 (445)
Q Consensus 227 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~ 305 (445)
|+...+......|.+.|++++|+..|++..... +.+...|..+..+|.+.|++++|...|+.+. .+.|+ ...|..
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al---~l~p~~~~a~~~ 77 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRAL---ELDGQSVKAHFF 77 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSCTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHH---HhCCCcHHHHHH
Confidence 345556667788888999999999998888764 3367778888888889999999999998887 34554 677888
Q ss_pred HHHHHHhcCChHHHHHHHHHHhc
Q 047840 306 VVDLLARAGMVEEAEKFIEEKMG 328 (445)
Q Consensus 306 l~~~~~~~g~~~~A~~~~~~~~~ 328 (445)
+..+|...|++++|...|+++.+
T Consensus 78 lg~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 78 LGQCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 88889999999999998888764
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.80 E-value=4.6e-08 Score=74.52 Aligned_cols=95 Identities=12% Similarity=-0.101 Sum_probs=87.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcC
Q 047840 304 ACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG 383 (445)
Q Consensus 304 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 383 (445)
......|.+.|++++|+..|++.++.. +.+...|..+..+|...|++++|.+.|+++++.+|.+..++..++.++...|
T Consensus 14 ~~~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g 92 (159)
T d1a17a_ 14 KTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 92 (159)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcC
Confidence 344667889999999999999999887 7789999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhcC
Q 047840 384 WDMEANKVRKLISETG 399 (445)
Q Consensus 384 ~~~~A~~~~~~m~~~~ 399 (445)
++++|...+++..+..
T Consensus 93 ~~~eA~~~~~~a~~~~ 108 (159)
T d1a17a_ 93 KFRAALRDYETVVKVK 108 (159)
T ss_dssp CHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHcC
Confidence 9999999999988753
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.80 E-value=1.2e-07 Score=72.95 Aligned_cols=135 Identities=7% Similarity=-0.035 Sum_probs=98.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHH
Q 047840 232 WNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLA 311 (445)
Q Consensus 232 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 311 (445)
+......+.+.|++++|+..|.+....-.... +....-......+. ..+|+.+..+|.
T Consensus 16 l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~--------------~~~~~~~~~~~~~~--------~~~~~nla~~y~ 73 (170)
T d1p5qa1 16 VKERGTVYFKEGKYKQALLQYKKIVSWLEYES--------------SFSNEEAQKAQALR--------LASHLNLAMCHL 73 (170)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCC--------------CCCSHHHHHHHHHH--------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcc--------------ccchHHHhhhchhH--------HHHHHHHHHHHH
Confidence 44455567777778888877777665311000 00000011111111 235677888999
Q ss_pred hcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHH
Q 047840 312 RAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEAN 389 (445)
Q Consensus 312 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 389 (445)
+.|++++|+..++..++.. |.++.+|..++.++...|++++|+..|+++++.+|.++.+...+..+..+.+...+..
T Consensus 74 k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e 150 (170)
T d1p5qa1 74 KLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE 150 (170)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999877 6789999999999999999999999999999999999999988888877766655543
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.76 E-value=4.8e-07 Score=70.92 Aligned_cols=125 Identities=7% Similarity=-0.010 Sum_probs=101.6
Q ss_pred HHHHHccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHH
Q 047840 205 VDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGL 284 (445)
Q Consensus 205 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 284 (445)
...+...|+++.|.+.|.++.++++.+|..+..+|...|++++|++.|++..+.+. -+...|..+..++.+.|++++|.
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp-~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhh-hhhhhHHHHHHHHHhhccHHHHH
Confidence 45567889999999999999888888999999999999999999999999988743 36778888888999999999999
Q ss_pred HHHHHhHHhhC-----------CCC--C-hhHHHHHHHHHHhcCChHHHHHHHHHHhcCC
Q 047840 285 NLFENMSAVYG-----------VEP--Q-LEHYACVVDLLARAGMVEEAEKFIEEKMGGL 330 (445)
Q Consensus 285 ~~~~~~~~~~~-----------~~~--~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 330 (445)
..|++...... ... + ..++..+..++.+.|++++|.+.+.......
T Consensus 91 ~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 91 KDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp HHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 99988865210 110 1 2445567788999999999999999987654
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.75 E-value=1.1e-07 Score=80.48 Aligned_cols=164 Identities=9% Similarity=-0.002 Sum_probs=112.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCC----hhHHHH
Q 047840 235 MISGVAMNGDAKKSLELFDRMVKS----GTQP-TETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ----LEHYAC 305 (445)
Q Consensus 235 l~~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~ 305 (445)
....|...+++++|.+.|.+..+. +.++ ...+|..+..+|.+.|++++|...++.....+.-..+ ..++..
T Consensus 43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 122 (290)
T d1qqea_ 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (290)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence 456677777778877777776542 1111 2346777778888888888888888876653211112 344555
Q ss_pred HHHHHH-hcCChHHHHHHHHHHhcC----CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCch-------hH
Q 047840 306 VVDLLA-RAGMVEEAEKFIEEKMGG----LGGG-DANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFS-------TH 372 (445)
Q Consensus 306 l~~~~~-~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~ 372 (445)
+...|. ..|++++|.+.+++..+. +.++ -..++..+...+...|++++|.+.|+++....+.+.. .+
T Consensus 123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (290)
T d1qqea_ 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (290)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence 666664 468999999988876432 2111 1345778888999999999999999999887665432 24
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 373 VLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 373 ~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
...+.++...|++..|...+++..+.
T Consensus 203 ~~~~~~~l~~~d~~~A~~~~~~~~~~ 228 (290)
T d1qqea_ 203 LKKGLCQLAATDAVAAARTLQEGQSE 228 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 45666778889999999988877654
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.73 E-value=5.2e-07 Score=76.13 Aligned_cols=91 Identities=11% Similarity=0.030 Sum_probs=41.0
Q ss_pred CCcHHHHHHHHHHhHHhhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCC-----C-HHHHHHHHHHHH
Q 047840 277 AKMVRDGLNLFENMSAVYGVEPQ----LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGG-----D-ANVWGALLSACR 346 (445)
Q Consensus 277 ~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~-~~~~~~l~~~~~ 346 (445)
.|++++|...+++.........+ ..++..+...+...|++++|...|+++....... . ...+...+..+.
T Consensus 131 ~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 210 (290)
T d1qqea_ 131 LHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQL 210 (290)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHH
Confidence 45555555555544322110111 2234445555666666666666666554332111 0 012233333445
Q ss_pred HcCChHHHHHHHHHHHHhCCC
Q 047840 347 IYGKIEVGNRVWRKLAEMGIT 367 (445)
Q Consensus 347 ~~g~~~~a~~~~~~~~~~~~~ 367 (445)
..|+++.|...+++..+.+|.
T Consensus 211 ~~~d~~~A~~~~~~~~~~~~~ 231 (290)
T d1qqea_ 211 AATDAVAAARTLQEGQSEDPN 231 (290)
T ss_dssp HTTCHHHHHHHHHGGGCC---
T ss_pred HhccHHHHHHHHHHHHHhCCC
Confidence 556666666666666555543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.72 E-value=6e-06 Score=68.35 Aligned_cols=229 Identities=8% Similarity=-0.012 Sum_probs=129.9
Q ss_pred ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCChhHHHHHHHHHHHcCCCCchhhhh
Q 047840 127 NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH----LGAITQGLWVHSYAKRYHLEKNVILAT 202 (445)
Q Consensus 127 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 202 (445)
|+..+..|...+.+.+++++|++.|++..+.| +...+..|...|.. ..+...+...+....+.+
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--------- 68 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--------- 68 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---------
Confidence 34455566666666677777777777766654 44444444444443 335555555555554443
Q ss_pred HHHHHHHccCChHHHHHHhhcCCCCChhhHHHHHHHHH----hcCChHHHHHHHHHHHHcCCCCCHHHHH-HHHHHhhcC
Q 047840 203 AVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA----MNGDAKKSLELFDRMVKSGTQPTETTFV-AVLTTCTHA 277 (445)
Q Consensus 203 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~m~~~~~~p~~~~~~-~l~~~~~~~ 277 (445)
++.....+...+. ...+.+.|...++.....|..+....+. .........
T Consensus 69 -------------------------~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~ 123 (265)
T d1ouva_ 69 -------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVT 123 (265)
T ss_dssp -------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSC
T ss_pred -------------------------ccchhhccccccccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCccc
Confidence 2222222222222 1345566666666666554322111111 111112234
Q ss_pred CcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHh----cCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH----cC
Q 047840 278 KMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLAR----AGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRI----YG 349 (445)
Q Consensus 278 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g 349 (445)
.....+...+..... ..+...+..|...|.. ..+...+...++...+.+ +......+...+.. ..
T Consensus 124 ~~~~~a~~~~~~~~~----~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~ 196 (265)
T d1ouva_ 124 RDFKKAVEYFTKACD----LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATK 196 (265)
T ss_dssp CCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCC
T ss_pred chhHHHHHHhhhhhc----ccccchhhhhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCccccc
Confidence 456666666666554 3455566666666664 345667777777765444 55566666666655 45
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH----cCChHHHHHHHHHHHhcCCc
Q 047840 350 KIEVGNRVWRKLAEMGITDFSTHVLSYNIYKE----AGWDMEANKVRKLISETGMK 401 (445)
Q Consensus 350 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~ 401 (445)
++++|+..|++..+.+ ++..+..|+.+|.+ ..+.++|.+.|++..+.|-.
T Consensus 197 d~~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 197 NFKEALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred chhhhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence 7888888888887765 45567778887775 34788888888888777653
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.62 E-value=8.4e-07 Score=67.88 Aligned_cols=94 Identities=10% Similarity=0.023 Sum_probs=79.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 047840 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYK 380 (445)
Q Consensus 301 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 380 (445)
.+|..+..+|.+.|++++|+..++..+... +.+..+|..+..++...|++++|...|+++++.+|+++.+...+..+..
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~ 143 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQK 143 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 356667888999999999999999998877 7889999999999999999999999999999999999988888888877
Q ss_pred HcCChHH-HHHHHHHH
Q 047840 381 EAGWDME-ANKVRKLI 395 (445)
Q Consensus 381 ~~g~~~~-A~~~~~~m 395 (445)
+.+...+ ..+++..|
T Consensus 144 ~~~~~~e~~kk~~~~~ 159 (168)
T d1kt1a1 144 KAKEHNERDRRTYANM 159 (168)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHH
Confidence 7766654 33355544
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.60 E-value=1.3e-07 Score=67.74 Aligned_cols=109 Identities=14% Similarity=-0.025 Sum_probs=82.0
Q ss_pred HHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCC---hHHHHHHHHHHhcCCCCCC-HHHHHHHHH
Q 047840 268 VAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGM---VEEAEKFIEEKMGGLGGGD-ANVWGALLS 343 (445)
Q Consensus 268 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~-~~~~~~l~~ 343 (445)
..++..+...+++++|.+.|+..... -+.+..++..+..++.+.++ +++|+.++++++..+..|+ ..+|..+..
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~--~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAA--GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 34667777888899999999988864 24456777788888876554 4568999999876552333 246788889
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 047840 344 ACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNI 378 (445)
Q Consensus 344 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 378 (445)
+|.+.|++++|++.|+++++.+|.+..+......+
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I 115 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLI 115 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 99999999999999999999999887666554433
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.55 E-value=3.9e-07 Score=66.20 Aligned_cols=94 Identities=10% Similarity=-0.108 Sum_probs=77.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCch-------hHHHH
Q 047840 303 YACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFS-------THVLS 375 (445)
Q Consensus 303 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~l 375 (445)
+..+...+.+.|++++|+..|.+.++.+ +.+..++..+..+|...|++++|++.++++++.+|.++. +|..+
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l 85 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 4456778889999999999999988877 677888999999999999999999999999998876554 45556
Q ss_pred HHHHHHcCChHHHHHHHHHHHh
Q 047840 376 YNIYKEAGWDMEANKVRKLISE 397 (445)
Q Consensus 376 ~~~~~~~g~~~~A~~~~~~m~~ 397 (445)
+..+...+++++|.+.+++...
T Consensus 86 g~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 86 GNSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHh
Confidence 6677788899999998877654
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.53 E-value=9.2e-07 Score=66.42 Aligned_cols=129 Identities=7% Similarity=-0.066 Sum_probs=90.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHH
Q 047840 231 AWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLL 310 (445)
Q Consensus 231 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 310 (445)
.+......+.+.|++.+|+..|.+....- |. .......... .... .....+|..+..+|
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~--~~-----------~~~~~~~~~~---~~~~-----~~~~~~~~Nla~~~ 77 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFF--IH-----------TEEWDDQILL---DKKK-----NIEISCNLNLATCY 77 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TT-----------CTTCCCHHHH---HHHH-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cc-----------hhhhhhHHHH---Hhhh-----hHHHHHHhhHHHHH
Confidence 44455666777788888888777766531 10 0000000000 0011 01234677788899
Q ss_pred HhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 047840 311 ARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKE 381 (445)
Q Consensus 311 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 381 (445)
.+.|++++|++.++..++.. |.+..+|..++.++...|++++|+..|+++++.+|.+..+...+..+..+
T Consensus 78 ~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~k 147 (153)
T d2fbna1 78 NKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 147 (153)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 99999999999999988877 77889999999999999999999999999999999988877766655443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.53 E-value=1.1e-06 Score=67.32 Aligned_cols=135 Identities=5% Similarity=-0.064 Sum_probs=97.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHH
Q 047840 232 WNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLA 311 (445)
Q Consensus 232 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 311 (445)
+......+...|++++|++.|.+..+. .+.. ... ..... ..... +.....+..+..++.
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~--~~~~-------~~~---~~~~~------~~~~~---~~~~~~~~nla~~~~ 88 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGS-------RAA---AEDAD------GAKLQ---PVALSCVLNIGACKL 88 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHH-------HHH---SCHHH------HGGGH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--hhhh-------hhh---hhhHH------HHHhC---hhhHHHHHHHHHHHH
Confidence 445566677788888888888776542 0000 000 00000 00000 123556777888999
Q ss_pred hcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHH
Q 047840 312 RAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEA 388 (445)
Q Consensus 312 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 388 (445)
+.|++++|+..++++++.. +.++.+|..+..++...|++++|++.|+++++.+|++..+...+..+..+.....++
T Consensus 89 ~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~~ 164 (169)
T d1ihga1 89 KMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 164 (169)
T ss_dssp HTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999887 778899999999999999999999999999999999988888887776655544443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.51 E-value=0.00014 Score=59.74 Aligned_cols=229 Identities=12% Similarity=0.068 Sum_probs=139.9
Q ss_pred ChhhHHHHHHHHHcCCChHHHHHHhccCCC-CChhhHHHHHHHHHh----cCCHhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 047840 96 DVVTWTTMVDGYGKMGDFENARELFEKMPE-RNAVSWSAIMAAYSR----ISDFKEVLSLFRQMQEVGMKPNESGLVSVL 170 (445)
Q Consensus 96 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 170 (445)
|+..+..|...+.+.+++++|+++|++..+ .+..++..|...|.. ..+...|...+......+ +......+.
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~l~ 77 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 77 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhccc
Confidence 566788888888899999999999998865 467777777777776 668899999998887765 334444444
Q ss_pred HHHHc----cCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCChH
Q 047840 171 TACAH----LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAK 246 (445)
Q Consensus 171 ~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 246 (445)
..+.. ..+.+.|...++...+.|.. .....+...+.... .......
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~---------------------------~~~~~~~ 127 (265)
T d1ouva_ 78 NLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGK---------------------------VVTRDFK 127 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCS---------------------------SSCCCHH
T ss_pred cccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCC---------------------------cccchhH
Confidence 44332 45677788888887776622 11122222221100 0112233
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhh----cCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHh----cCChHH
Q 047840 247 KSLELFDRMVKSGTQPTETTFVAVLTTCT----HAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLAR----AGMVEE 318 (445)
Q Consensus 247 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 318 (445)
.+...+...... .+...+..+...+. ...+...+...++...+. .+......+...|.. ..++++
T Consensus 128 ~a~~~~~~~~~~---~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~----g~~~A~~~lg~~y~~g~~~~~d~~~ 200 (265)
T d1ouva_ 128 KAVEYFTKACDL---NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKE 200 (265)
T ss_dssp HHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHH
T ss_pred HHHHHhhhhhcc---cccchhhhhhhhhccCCCcccccccchhhhhccccc----cccccccchhhhcccCcccccchhh
Confidence 444444443332 23333333433333 234556666666666542 244444455555544 457888
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCC
Q 047840 319 AEKFIEEKMGGLGGGDANVWGALLSACRI----YGKIEVGNRVWRKLAEMGIT 367 (445)
Q Consensus 319 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~ 367 (445)
|..+|.+..+.| ++..+..|...|.. ..+.++|.+.|+++.+.+..
T Consensus 201 A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 201 ALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred hhhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence 888888887765 45566667777664 33678888888888887754
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.49 E-value=2e-07 Score=66.81 Aligned_cols=94 Identities=12% Similarity=-0.098 Sum_probs=81.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHhCCCC--chhHHHHHHH
Q 047840 304 ACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYG---KIEVGNRVWRKLAEMGITD--FSTHVLSYNI 378 (445)
Q Consensus 304 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~ 378 (445)
..+++.+...+++++|.+.|++.+..+ +.++.++..+..++.+.+ ++++|+.+++++++.+|.+ ..++..++.+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 467788889999999999999999888 788999999999998654 4567999999999988753 4478899999
Q ss_pred HHHcCChHHHHHHHHHHHhc
Q 047840 379 YKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 379 ~~~~g~~~~A~~~~~~m~~~ 398 (445)
|.+.|++++|.+.++++.+.
T Consensus 82 y~~~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQT 101 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHh
Confidence 99999999999999999874
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.48 E-value=0.00024 Score=59.82 Aligned_cols=279 Identities=9% Similarity=0.028 Sum_probs=138.0
Q ss_pred CCcccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHH
Q 047840 28 PNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGY 107 (445)
Q Consensus 28 p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~ 107 (445)
||..--..+...|.+.|.++ .|..++..+ .-|..++..+.+.++++.|.+.+.+.. +..+|..+...+
T Consensus 12 ~n~~d~~~i~~~c~~~~lye-~A~~lY~~~---------~d~~rl~~~~v~l~~~~~avd~~~k~~--~~~~~k~~~~~l 79 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYD-AAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFAC 79 (336)
T ss_dssp C----------------CTT-THHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHH-HHHHHHHhC---------CCHHHHHHHHHhhccHHHHHHHHHHcC--CHHHHHHHHHHH
Confidence 56555666777788888888 788887643 235677788888888888888776543 556777777787
Q ss_pred HcCCChHHHHHHhccCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHH
Q 047840 108 GKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHS 187 (445)
Q Consensus 108 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 187 (445)
.+......|.- .......++.....++..|-..|.+++...+++..... -.++...++-++..|++.+. + ++.+
T Consensus 80 ~~~~e~~la~i-~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~~-~---kl~e 153 (336)
T d1b89a_ 80 VDGKEFRLAQM-CGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFKP-Q---KMRE 153 (336)
T ss_dssp HHTTCHHHHHH-TTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTCH-H---HHHH
T ss_pred HhCcHHHHHHH-HHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhCh-H---HHHH
Confidence 77766654422 22222234444566778888888888888888876543 24466667777777777542 2 3333
Q ss_pred HHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 047840 188 YAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTF 267 (445)
Q Consensus 188 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 267 (445)
.+...+...+ ...++..|-+.+-++++.-++ .+.|+++.|..++-. + .++....
T Consensus 154 ~l~~~s~~y~---~~k~~~~c~~~~l~~elv~Ly------------------~~~~~~~~A~~~~i~---~--~~~~~~~ 207 (336)
T d1b89a_ 154 HLELFWSRVN---IPKVLRAAEQAHLWAELVFLY------------------DKYEEYDNAIITMMN---H--PTDAWKE 207 (336)
T ss_dssp HHHHHSTTSC---HHHHHHHHHTTTCHHHHHHHH------------------HHTTCHHHHHHHHHH---S--TTTTCCH
T ss_pred HHHhccccCC---HHHHHHHHHHcCChHHHHHHH------------------HhcCCHHHHHHHHHH---c--chhhhhH
Confidence 3333221111 122344455555554444433 334444444332211 1 1111111
Q ss_pred HHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCCh-----------hHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHH
Q 047840 268 VAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL-----------EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDAN 336 (445)
Q Consensus 268 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 336 (445)
..++..+.+..+.+...+......+. .|+. ..-..++..+.+.+++.-...+++...+.+ +..
T Consensus 208 ~~f~e~~~k~~N~e~~~~~i~~yL~~---~p~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~~n---~~~ 281 (336)
T d1b89a_ 208 GQFKDIITKVANVELYYRAIQFYLEF---KPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHN---NKS 281 (336)
T ss_dssp HHHHHHHHHCSSTHHHHHHHHHHHHH---CGGGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTC---CHH
T ss_pred HHHHHHHHccCChHHHHHHHHHHHHc---CHHHHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHHcC---hHH
Confidence 12222233333333333322222211 1110 001234444555566666666666655444 346
Q ss_pred HHHHHHHHHHHcCChHHHHH
Q 047840 337 VWGALLSACRIYGKIEVGNR 356 (445)
Q Consensus 337 ~~~~l~~~~~~~g~~~~a~~ 356 (445)
+.+++...|...++++.-.+
T Consensus 282 vn~al~~lyie~~d~~~l~~ 301 (336)
T d1b89a_ 282 VNESLNNLFITEEDYQALRT 301 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhCcchhHHHHH
Confidence 77888888888887654433
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.40 E-value=1.9e-06 Score=65.97 Aligned_cols=63 Identities=6% Similarity=-0.216 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 336 NVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 336 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
.+|+.+..+|.+.|++++|+..++++++.+|.++.++..++.+|...|++++|...|++..+.
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 457778889999999999999999999999999999999999999999999999999998774
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.34 E-value=7.1e-06 Score=61.39 Aligned_cols=63 Identities=8% Similarity=-0.147 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 336 NVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 336 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
.++..+..+|.+.|++++|++.++++++.+|.+..+|..++.++...|++++|...|++..+.
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 467788999999999999999999999999999999999999999999999999999988765
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.31 E-value=2.7e-06 Score=59.91 Aligned_cols=88 Identities=11% Similarity=-0.099 Sum_probs=51.3
Q ss_pred HHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCC
Q 047840 271 LTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGK 350 (445)
Q Consensus 271 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 350 (445)
...+.+.|++++|...|+++... -+-+...|..+..++.+.|++++|+..|++.++.. +.+..+|..+...|...|+
T Consensus 23 g~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 23 GLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHhhhccc--ccccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCC
Confidence 33455556666666666666543 12235555566666666666666666666655554 4455666666666666666
Q ss_pred hHHHHHHHHHH
Q 047840 351 IEVGNRVWRKL 361 (445)
Q Consensus 351 ~~~a~~~~~~~ 361 (445)
+++|++.+++.
T Consensus 100 ~~~A~~~l~~~ 110 (112)
T d1hxia_ 100 ANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666666654
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.27 E-value=7.5e-06 Score=62.83 Aligned_cols=71 Identities=11% Similarity=-0.031 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHH-----hcCCccCCc
Q 047840 335 ANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLIS-----ETGMKKKPG 405 (445)
Q Consensus 335 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~~~~~~~~ 405 (445)
...+..+..++...|++++|+..++++++.+|.+...|..++.+|.+.|++++|.+.|+++. +.|+.|.+.
T Consensus 67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~ 142 (179)
T d2ff4a2 67 VLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 142 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHH
Confidence 35678889999999999999999999999999999999999999999999999999999984 368877554
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.22 E-value=4.2e-07 Score=82.98 Aligned_cols=223 Identities=8% Similarity=-0.018 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCch-hhhhHHHHHHHccCChHHHHHHhhc
Q 047840 146 EVLSLFRQMQEVGMKPN-ESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNV-ILATAVVDMYSKCGHVHSALSVFEG 223 (445)
Q Consensus 146 ~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~ 223 (445)
+|.+.|++..+ ++|+ ...+..+..++...+++++| |++++..+ |+- ...+.... +- ...+..+.+.++.
T Consensus 4 eA~q~~~qA~~--l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~d--p~~a~~~~~e~~-Lw-~~~y~~~ie~~r~ 74 (497)
T d1ya0a1 4 QSAQYLRQAEV--LKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTD--LEYALDKKVEQD-LW-NHAFKNQITTLQG 74 (497)
T ss_dssp HHHHHHHHHHH--HHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHC--HHHHHHHTHHHH-HH-HHHTHHHHHHHHH
T ss_pred HHHHHHHHHHH--cCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcC--hhhHHHHhHHHH-HH-HHHHHHHHHHHHH
Confidence 56777777765 2343 33445555666666666654 56655442 211 11111100 00 1113344444443
Q ss_pred CCC----CChhhHHHHHHH--HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCC
Q 047840 224 ISN----KDAGAWNAMISG--VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVE 297 (445)
Q Consensus 224 ~~~----~~~~~~~~l~~~--~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 297 (445)
..+ ++.......... ....+.++.++..+.+..... .++...+..+...+.+.|+.+.|...+...... .
T Consensus 75 ~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~ 150 (497)
T d1ya0a1 75 QAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY---I 150 (497)
T ss_dssp HHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHH---H
T ss_pred hcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC---C
Confidence 322 122111111111 122334444444444333221 223445556666677777777777766655532 1
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 047840 298 PQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYN 377 (445)
Q Consensus 298 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 377 (445)
| ..++..+.+.+...|++++|...|++..+.. |.+...|+.++..+...|+..+|+..|.+.+...|+.+.++..|..
T Consensus 151 ~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~ 228 (497)
T d1ya0a1 151 C-QHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQK 228 (497)
T ss_dssp H-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 1 3456667777777888888888888777665 5566778888888888888888888888888887777777777777
Q ss_pred HHHHcC
Q 047840 378 IYKEAG 383 (445)
Q Consensus 378 ~~~~~g 383 (445)
.+.+..
T Consensus 229 ~~~~~~ 234 (497)
T d1ya0a1 229 ALSKAL 234 (497)
T ss_dssp HHHHHT
T ss_pred HHHHhh
Confidence 665543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.20 E-value=6.3e-06 Score=62.94 Aligned_cols=65 Identities=6% Similarity=-0.198 Sum_probs=60.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 334 DANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 334 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
+...|..+..++.+.|++++|+..++++++.+|.++.+|..++.+|.+.|++++|.+.|++..+.
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 45577888899999999999999999999999999999999999999999999999999998874
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.15 E-value=0.0015 Score=54.82 Aligned_cols=268 Identities=11% Similarity=0.066 Sum_probs=154.7
Q ss_pred hchhhcCCchHHHHHHHHHHhcCCCCCcccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCH
Q 047840 3 RGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKM 82 (445)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (445)
+-|.+.|.++.|..+|..+.. |..++..+.+.++++ .+..+.. +.+ +..+|..+...+......
T Consensus 22 ~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~-~avd~~~---k~~---~~~~~k~~~~~l~~~~e~ 85 (336)
T d1b89a_ 22 DRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQ-AAVDGAR---KAN---STRTWKEVCFACVDGKEF 85 (336)
T ss_dssp -------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHH-HHHHHHH---HHT---CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHH-HHHHHHH---HcC---CHHHHHHHHHHHHhCcHH
Confidence 346688999999999986654 788899999999988 6666543 333 567888888888888777
Q ss_pred HHHHHHhccCCCCChhhHHHHHHHHHcCCChHHHHHHhccCC---CCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCC
Q 047840 83 GTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMP---ERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGM 159 (445)
Q Consensus 83 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 159 (445)
..+.-+ ......++.....++..|-..|.+++...+++... ..+...++-++..|++.+ .++..+.+... +.
T Consensus 86 ~la~i~-~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e~l~~~---s~ 160 (336)
T d1b89a_ 86 RLAQMC-GLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHLELF---WS 160 (336)
T ss_dssp HHHHHT-TTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHHHHHH---ST
T ss_pred HHHHHH-HHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHHHHHhc---cc
Confidence 665433 22222355556788999999999999999999754 346777889999998865 44444444332 11
Q ss_pred CCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCCCChhhHHHHHHHH
Q 047840 160 KPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239 (445)
Q Consensus 160 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~ 239 (445)
.-| ..-++..|...+-+.+ ++..|.+.|+++.|..+.-.-.. ++.-...++..+
T Consensus 161 ~y~---~~k~~~~c~~~~l~~e----------------------lv~Ly~~~~~~~~A~~~~i~~~~-~~~~~~~f~e~~ 214 (336)
T d1b89a_ 161 RVN---IPKVLRAAEQAHLWAE----------------------LVFLYDKYEEYDNAIITMMNHPT-DAWKEGQFKDII 214 (336)
T ss_dssp TSC---HHHHHHHHHTTTCHHH----------------------HHHHHHHTTCHHHHHHHHHHSTT-TTCCHHHHHHHH
T ss_pred cCC---HHHHHHHHHHcCChHH----------------------HHHHHHhcCCHHHHHHHHHHcch-hhhhHHHHHHHH
Confidence 222 2234555555555444 44445555555555544322111 111223333444
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHH-------------HHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHH
Q 047840 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVA-------------VLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACV 306 (445)
Q Consensus 240 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 306 (445)
.+..+++...++.....+. .| ...+. ++..+.+.+++......++..... + +..+.+++
T Consensus 215 ~k~~N~e~~~~~i~~yL~~--~p--~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~~-n---~~~vn~al 286 (336)
T d1b89a_ 215 TKVANVELYYRAIQFYLEF--KP--LLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNH-N---NKSVNESL 286 (336)
T ss_dssp HHCSSTHHHHHHHHHHHHH--CG--GGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTT-C---CHHHHHHH
T ss_pred HccCChHHHHHHHHHHHHc--CH--HHHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHHc-C---hHHHHHHH
Confidence 4444444444444433332 12 11222 333334445555555555554432 2 34677888
Q ss_pred HHHHHhcCChHHHHHHHHH
Q 047840 307 VDLLARAGMVEEAEKFIEE 325 (445)
Q Consensus 307 ~~~~~~~g~~~~A~~~~~~ 325 (445)
...|...++++.-++..+.
T Consensus 287 ~~lyie~~d~~~l~~~i~~ 305 (336)
T d1b89a_ 287 NNLFITEEDYQALRTSIDA 305 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhCcchhHHHHHHHHH
Confidence 8889888887665555544
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.12 E-value=8.2e-07 Score=80.98 Aligned_cols=223 Identities=7% Similarity=-0.085 Sum_probs=130.9
Q ss_pred HHHHHhccCCC--C-ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCChhHHHHHHHHHH
Q 047840 115 NARELFEKMPE--R-NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNE-SGLVSVLTACAHLGAITQGLWVHSYAK 190 (445)
Q Consensus 115 ~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~ 190 (445)
+|.+.|++..+ | ...++..+..++...|++++| |++++.. .|+. ...+... .+. ...+..+...++...
T Consensus 4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~--dp~~a~~~~~e~-~Lw-~~~y~~~ie~~r~~~ 76 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVT--DLEYALDKKVEQ-DLW-NHAFKNQITTLQGQA 76 (497)
T ss_dssp HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHH--CHHHHHHHTHHH-HHH-HHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHc--ChhhHHHHhHHH-HHH-HHHHHHHHHHHHHhc
Confidence 56677777653 3 345667777888888888876 6776653 2321 1111111 111 112455666676666
Q ss_pred HcCCCCchhhhhHH--HHHHHccCChHHHHHHhhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 047840 191 RYHLEKNVILATAV--VDMYSKCGHVHSALSVFEGISN---KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTET 265 (445)
Q Consensus 191 ~~~~~~~~~~~~~l--~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 265 (445)
+....++..-.... ...+...+.++.++..+.+..+ ++...+..+...+.+.|+.+.|...+.+..... | ..
T Consensus 77 k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~-~~ 153 (497)
T d1ya0a1 77 KNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI--C-QH 153 (497)
T ss_dssp SCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHHH--H-HH
T ss_pred ccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC--H-HH
Confidence 54433333222221 1223345677888887776544 355677888888999999999998887765531 2 35
Q ss_pred HHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 047840 266 TFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSAC 345 (445)
Q Consensus 266 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 345 (445)
++..+...+...|++++|...|++..+. .+.+...|+.|...+...|+..+|...|.+.+... +|.+.++..|...+
T Consensus 154 ~~~~LG~l~~~~~~~~~A~~~y~~A~~l--~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~ 230 (497)
T d1ya0a1 154 CLVHLGDIARYRNQTSQAESYYRHAAQL--VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKAL 230 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHH
Confidence 6777888899999999999999999964 23346889999999999999999999999999887 78899999999888
Q ss_pred HHcCC
Q 047840 346 RIYGK 350 (445)
Q Consensus 346 ~~~g~ 350 (445)
.+..+
T Consensus 231 ~~~~~ 235 (497)
T d1ya0a1 231 SKALE 235 (497)
T ss_dssp HHHTT
T ss_pred HHhhh
Confidence 66543
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.09 E-value=3e-05 Score=58.85 Aligned_cols=63 Identities=6% Similarity=-0.194 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 336 NVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 336 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
.+|..+..+|.+.|++++|+..++++++.+|.+..++..++.++...|++++|...|++..+.
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 356678888999999999999999999999999999999999999999999999999998764
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.05 E-value=4.9e-06 Score=61.55 Aligned_cols=114 Identities=10% Similarity=-0.003 Sum_probs=73.4
Q ss_pred CCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHh----------cCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 047840 277 AKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLAR----------AGMVEEAEKFIEEKMGGLGGGDANVWGALLSACR 346 (445)
Q Consensus 277 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 346 (445)
.+.+++|...|+...+. -+.+...+..+..+|.. .+.+++|+..|++.++.. |.+..+|..+..+|.
T Consensus 10 ~~~fe~A~~~~e~al~~--~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~y~ 86 (145)
T d1zu2a1 10 ILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYT 86 (145)
T ss_dssp HHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHHhh--CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHHHH
Confidence 34456666666666543 12334445555544442 234567777777777666 566777777777776
Q ss_pred HcC-----------ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 047840 347 IYG-----------KIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGM 400 (445)
Q Consensus 347 ~~g-----------~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 400 (445)
..| .+++|.+.|+++++.+|.+...+..|... ..|.+++.+..+.|+
T Consensus 87 ~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~-------~ka~~~~~e~~k~~~ 144 (145)
T d1zu2a1 87 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT-------AKAPQLHAEAYKQGL 144 (145)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH-------HTHHHHHHHHHHSSS
T ss_pred HcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHH-------HHHHHHHHHHHHHhc
Confidence 554 36889999999999999988766666655 355566666666554
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.97 E-value=2.7e-05 Score=56.09 Aligned_cols=97 Identities=8% Similarity=0.035 Sum_probs=58.6
Q ss_pred HHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCC-CCC-----HHHHHHHH
Q 047840 269 AVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLG-GGD-----ANVWGALL 342 (445)
Q Consensus 269 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~-----~~~~~~l~ 342 (445)
.+...+...|++++|+..|.+..+. .+.+...+..+..+|.+.|++++|...++++++... .+. ..+|..+.
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 3445566666666666666666653 123455666666667777777777776666554220 011 23556666
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCC
Q 047840 343 SACRIYGKIEVGNRVWRKLAEMGIT 367 (445)
Q Consensus 343 ~~~~~~g~~~~a~~~~~~~~~~~~~ 367 (445)
..+...+++++|++.|++.+...+.
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~~~~~ 111 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLAEHRT 111 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 6777777777777777777766553
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.95 E-value=2.7e-05 Score=52.60 Aligned_cols=78 Identities=14% Similarity=0.026 Sum_probs=61.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHhcCC-----CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHH
Q 047840 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGL-----GGG-DANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVL 374 (445)
Q Consensus 301 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 374 (445)
..+-.+...+.+.|++++|...|++.++.. ..+ ...++..+..++.+.|++++|+..++++++.+|+++.++..
T Consensus 6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~N 85 (95)
T d1tjca_ 6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (95)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHH
Confidence 344467778888999999999888775431 112 25688999999999999999999999999999999888887
Q ss_pred HHHH
Q 047840 375 SYNI 378 (445)
Q Consensus 375 l~~~ 378 (445)
+...
T Consensus 86 l~~~ 89 (95)
T d1tjca_ 86 LKYF 89 (95)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.95 E-value=8.1e-06 Score=60.34 Aligned_cols=88 Identities=10% Similarity=-0.071 Sum_probs=74.6
Q ss_pred HHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHc----------CChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 047840 310 LARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIY----------GKIEVGNRVWRKLAEMGITDFSTHVLSYNIY 379 (445)
Q Consensus 310 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 379 (445)
|-+.+.+++|+..|+..++.. |.++.++..+..++... +.+++|+..|+++++.+|+++.+|..++.+|
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y 85 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAY 85 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHH
Confidence 456778999999999999887 78889999999888743 4568899999999999999999999999999
Q ss_pred HHcCC-----------hHHHHHHHHHHHhc
Q 047840 380 KEAGW-----------DMEANKVRKLISET 398 (445)
Q Consensus 380 ~~~g~-----------~~~A~~~~~~m~~~ 398 (445)
...|+ +++|.+.|++..+.
T Consensus 86 ~~~g~~~~~~~~~~~~~~~A~~~~~kal~l 115 (145)
T d1zu2a1 86 TSFAFLTPDETEAKHNFDLATQFFQQAVDE 115 (145)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcccchhhHHHHHHhHHHhhhhhhccccc
Confidence 88764 57888888877654
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.82 E-value=8.5e-05 Score=55.49 Aligned_cols=97 Identities=18% Similarity=-0.040 Sum_probs=71.4
Q ss_pred HHHHH--HHHHHhcCChHHHHHHHHHHhcCC-CCC----------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-
Q 047840 302 HYACV--VDLLARAGMVEEAEKFIEEKMGGL-GGG----------DANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT- 367 (445)
Q Consensus 302 ~~~~l--~~~~~~~g~~~~A~~~~~~~~~~~-~~~----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~- 367 (445)
.|..+ ...+...|++++|+..|++.++.. -.| ....|+.+..+|...|++++|...++++++..|.
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~ 88 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 88 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence 44444 445566788888888888776431 011 1457888999999999999999999999875331
Q ss_pred ----------CchhHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 368 ----------DFSTHVLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 368 ----------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
...++..++.+|...|++++|.+.|++..+.
T Consensus 89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1225678899999999999999999987653
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.79 E-value=3.6e-05 Score=62.99 Aligned_cols=128 Identities=9% Similarity=-0.035 Sum_probs=67.5
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHHhcCChHH
Q 047840 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ-LEHYACVVDLLARAGMVEE 318 (445)
Q Consensus 240 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~ 318 (445)
.+.|++++|+..+++..+.. +-|...+..+...++..|++++|...++...+. .|+ ...+..+...+...+..++
T Consensus 7 L~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l---~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHhccccHH
Confidence 45677777777777776653 225566667777777777777777777777643 444 2333333333332222222
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchh
Q 047840 319 AEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFST 371 (445)
Q Consensus 319 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 371 (445)
+..-.......+-+++...+......+...|+.++|.+.++++.+..|..+..
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~ 135 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFL 135 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEE
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcc
Confidence 22211111111111222333344455666677777777777777766654433
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.67 E-value=3.6e-05 Score=62.97 Aligned_cols=123 Identities=10% Similarity=0.024 Sum_probs=88.2
Q ss_pred hhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHH
Q 047840 274 CTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEV 353 (445)
Q Consensus 274 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 353 (445)
..+.|++++|+..+++..+. -+.+...+..+...|+..|++++|...++...+.. +.+...+..+...+...+..++
T Consensus 6 aL~~G~l~eAl~~l~~al~~--~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~-P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF-PEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhccccHH
Confidence 45679999999999999974 35568889999999999999999999999998765 4455666666666554444433
Q ss_pred HHHHHHHHHHh-CCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 047840 354 GNRVWRKLAEM-GITDFSTHVLSYNIYKEAGWDMEANKVRKLISETG 399 (445)
Q Consensus 354 a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 399 (445)
+.......... .|++...+...+..+...|+.++|.+.++++.+..
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~ 129 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR 129 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 32222111112 23334445566778999999999999999987653
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.60 E-value=0.00045 Score=51.36 Aligned_cols=95 Identities=14% Similarity=-0.042 Sum_probs=65.6
Q ss_pred HhhcCCcHHHHHHHHHHhHHhhCCCCC----------hhHHHHHHHHHHhcCChHHHHHHHHHHhcC-----CCCCC---
Q 047840 273 TCTHAKMVRDGLNLFENMSAVYGVEPQ----------LEHYACVVDLLARAGMVEEAEKFIEEKMGG-----LGGGD--- 334 (445)
Q Consensus 273 ~~~~~~~~~~a~~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~--- 334 (445)
.+...|++++|+..|++......-.|+ ...|+.+..+|...|++++|...+++.++. ...++
T Consensus 18 ~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~ 97 (156)
T d2hr2a1 18 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGK 97 (156)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccc
Confidence 344556677777777666653222222 346777888888888888888888776532 11122
Q ss_pred --HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 047840 335 --ANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT 367 (445)
Q Consensus 335 --~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 367 (445)
..++..+..+|...|++++|+..|++++++.|.
T Consensus 98 ~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~ 132 (156)
T d2hr2a1 98 LWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 132 (156)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 235777889999999999999999999986553
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.58 E-value=0.00056 Score=52.03 Aligned_cols=115 Identities=8% Similarity=0.007 Sum_probs=79.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHh
Q 047840 233 NAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLAR 312 (445)
Q Consensus 233 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 312 (445)
..........|++++|.+.|.+....- +... +..+. .+.+ +...-..+... ....+..++.++.+
T Consensus 15 ~~~g~~~~~~g~~e~A~~~~~~AL~l~--rG~~-----l~~~~-~~~w--~~~~r~~l~~~-----~~~a~~~la~~~~~ 79 (179)
T d2ff4a2 15 KTAGVHAAAAGRFEQASRHLSAALREW--RGPV-----LDDLR-DFQF--VEPFATALVED-----KVLAHTAKAEAEIA 79 (179)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC--CSST-----TGGGT-TSTT--HHHHHHHHHHH-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhC--cccc-----cccCc-chHH--HHHHHHHHHHH-----HHHHHHHHHHHHHH
Confidence 334456778889999999888887641 1110 00011 1111 11111222211 23566778899999
Q ss_pred cCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 047840 313 AGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAE 363 (445)
Q Consensus 313 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 363 (445)
.|++++|...++.+++.. +-+...|..++.+|...|+.++|++.|+++.+
T Consensus 80 ~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~ 129 (179)
T d2ff4a2 80 CGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKT 129 (179)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 999999999999998877 77899999999999999999999999999854
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.31 E-value=0.00062 Score=45.52 Aligned_cols=64 Identities=11% Similarity=-0.228 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-------chhHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 335 ANVWGALLSACRIYGKIEVGNRVWRKLAEMGITD-------FSTHVLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 335 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
...+-.++..+.+.|++++|+..|+++++..|.+ ..++..++.++.+.|++++|...++++.+.
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 4445578889999999999999999999865542 346889999999999999999999998765
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=97.26 E-value=0.053 Score=47.60 Aligned_cols=80 Identities=11% Similarity=0.064 Sum_probs=35.2
Q ss_pred CChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHH
Q 047840 314 GMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRK 393 (445)
Q Consensus 314 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 393 (445)
+..+.+...+......+ .+.......+......++...+...++.+.......+....-++.++...|+.++|...+.
T Consensus 266 ~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~ 343 (450)
T d1qsaa1 266 DVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILH 343 (450)
T ss_dssp TCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CchHHHHHHHHhhcccc--cchHHHHHHHHHHHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHH
Confidence 34444544444433222 2233223333333444555555555544432222233344455555555555555555555
Q ss_pred HH
Q 047840 394 LI 395 (445)
Q Consensus 394 ~m 395 (445)
..
T Consensus 344 ~~ 345 (450)
T d1qsaa1 344 QL 345 (450)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.82 E-value=0.034 Score=37.84 Aligned_cols=141 Identities=12% Similarity=0.104 Sum_probs=81.4
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHH
Q 047840 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEE 318 (445)
Q Consensus 239 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 318 (445)
+.-.|..++..+++.+.... .+..-||-++--....-+-+-..+.++.+-+-+.+.| ++++..
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~--------------C~Nlk~ 74 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDK--------------CQNLKS 74 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGG--------------CSCTHH
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCchh--------------hhcHHH
Confidence 34567778888888777664 2445555555555555555666666666654333322 233333
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 319 AEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 319 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
...-+-.+ + .+....+..++.+...|+-+.-.++++.+.+.+..++.....++.+|.+.|...++.+++.+.-+.
T Consensus 75 vv~C~~~~---n--~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~ 149 (161)
T d1wy6a1 75 VVECGVIN---N--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK 149 (161)
T ss_dssp HHHHHHHT---T--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHh---c--chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence 33333332 1 233334445566666677666667766666655556666667777777777777777777777666
Q ss_pred CCc
Q 047840 399 GMK 401 (445)
Q Consensus 399 ~~~ 401 (445)
|++
T Consensus 150 G~K 152 (161)
T d1wy6a1 150 GEK 152 (161)
T ss_dssp TCH
T ss_pred hHH
Confidence 654
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.41 E-value=0.056 Score=38.10 Aligned_cols=81 Identities=7% Similarity=-0.081 Sum_probs=37.9
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH----cCChH
Q 047840 315 MVEEAEKFIEEKMGGLGGGDANVWGALLSACRI----YGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKE----AGWDM 386 (445)
Q Consensus 315 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~ 386 (445)
+.++|.+++++..+.| ++.....|...|.. ..+.++|.++|++..+.+. +.....|+..|.. ..+.+
T Consensus 38 ~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~--~~a~~~Lg~~y~~G~gv~~d~~ 112 (133)
T d1klxa_ 38 NKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLND--QDGCLILGYKQYAGKGVVKNEK 112 (133)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHTSSSCCCHH
T ss_pred CHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccCc--chHHHHHHHHHHcCCccCCCHH
Confidence 4445555555444433 22333333333332 2244555555555555432 3344455555544 33555
Q ss_pred HHHHHHHHHHhcCC
Q 047840 387 EANKVRKLISETGM 400 (445)
Q Consensus 387 ~A~~~~~~m~~~~~ 400 (445)
+|.+++++..+.|.
T Consensus 113 ~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 113 QAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHCCC
Confidence 56666655555443
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.38 E-value=0.072 Score=36.23 Aligned_cols=66 Identities=20% Similarity=0.184 Sum_probs=48.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 047840 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT 367 (445)
Q Consensus 301 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 367 (445)
......++.+...|+-++-.++++.+.+.+ +|++.....+..+|.+.|...++.+++.++-+.|..
T Consensus 87 e~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 87 EHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 344555677777888888888888877665 778888888888888888888888888887776653
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.16 E-value=0.12 Score=36.35 Aligned_cols=112 Identities=9% Similarity=0.073 Sum_probs=76.6
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHh----cCChHHH
Q 047840 244 DAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLAR----AGMVEEA 319 (445)
Q Consensus 244 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A 319 (445)
++++|+++|++..+.|.. . ....+ +.....+.++|..++++..+. | ++.....|...|.. ..+.++|
T Consensus 8 d~~~A~~~~~kaa~~g~~-~--a~~~l--~~~~~~~~~~a~~~~~~aa~~-g---~~~a~~~Lg~~y~~g~~~~~d~~~A 78 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNEM-F--GCLSL--VSNSQINKQKLFQYLSKACEL-N---SGNGCRFLGDFYENGKYVKKDLRKA 78 (133)
T ss_dssp HHHHHHHHHHHHHHTTCT-T--HHHHH--HTCTTSCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CHHHHHHHHHHHHHCCCh-h--hhhhh--ccccccCHHHHHHHHhhhhcc-c---chhhhhhHHHhhhhccccchhhHHH
Confidence 677888888888777632 2 22222 234456788899998888764 3 44555556666654 4578899
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCC
Q 047840 320 EKFIEEKMGGLGGGDANVWGALLSACRI----YGKIEVGNRVWRKLAEMGIT 367 (445)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~ 367 (445)
.++|++..+.+ ++.....|...|.. ..+.++|.++|+++.+.+.+
T Consensus 79 ~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~~ 127 (133)
T d1klxa_ 79 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 127 (133)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCCH
Confidence 99999988766 34455566666665 35788999999998887754
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.78 E-value=0.12 Score=35.36 Aligned_cols=46 Identities=9% Similarity=-0.054 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhCCCCc-hhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 047840 352 EVGNRVWRKLAEMGITDF-STHVLSYNIYKEAGWDMEANKVRKLISE 397 (445)
Q Consensus 352 ~~a~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 397 (445)
++++.+|+++.+.+|.+. ..+..|+.+|.+.|++++|.+.++.+.+
T Consensus 55 ~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 55 RLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 455555555555444432 3444555555555555555555555443
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.11 E-value=0.25 Score=33.68 Aligned_cols=74 Identities=11% Similarity=0.015 Sum_probs=51.7
Q ss_pred CChhHHHHHHHHHHhc---CChHHHHHHHHHHhcCCCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhH
Q 047840 298 PQLEHYACVVDLLARA---GMVEEAEKFIEEKMGGLGGGDA-NVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTH 372 (445)
Q Consensus 298 ~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 372 (445)
|+..+--...-++.+. .+.++++.+++++.+.+ +.+. ..+-.|.-+|.+.|++++|.+.++.+++.+|.+..+.
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~ 110 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 110 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHH
Confidence 4444433444445544 34568888888887654 3343 5666778888899999999999999999999876543
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=94.17 E-value=0.38 Score=30.83 Aligned_cols=62 Identities=15% Similarity=0.040 Sum_probs=49.8
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHH
Q 047840 315 MVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY 376 (445)
Q Consensus 315 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 376 (445)
+.-++.+-++.+....+.|++.+..+.+++|.+.+++..|+++|+-+....-++...|..+.
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~~~k~~y~yil 82 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 82 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 45577788888888888999999999999999999999999999998875543444565544
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=90.30 E-value=0.69 Score=29.61 Aligned_cols=62 Identities=21% Similarity=0.305 Sum_probs=42.0
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHH
Q 047840 244 DAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVV 307 (445)
Q Consensus 244 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 307 (445)
+.-++.+-++.+.....-|++....+.+.+|.+.+++..|.++++.++.+.+ ++...|..++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~--~~k~~y~yil 82 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVI 82 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CcHHHHHHHH
Confidence 3445556666666666778888888888888888888888888887776433 3344555554
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| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=86.23 E-value=9 Score=32.63 Aligned_cols=329 Identities=9% Similarity=-0.067 Sum_probs=171.4
Q ss_pred HHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHhccC--C-CCChhhHHHH--------
Q 047840 35 PLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKS--P-DRDVVTWTTM-------- 103 (445)
Q Consensus 35 ~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--~-~~~~~~~~~l-------- 103 (445)
..+..+.+.+++. .....+ ...+++...-.....+....|+.+.|...+..+ . ...+..+..+
T Consensus 77 ~~l~~L~~~~~w~-~~~~~~-----~~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~~ 150 (450)
T d1qsaa1 77 RFVNELARREDWR-GLLAFS-----PEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASG 150 (450)
T ss_dssp HHHHHHHHTTCHH-HHHHHC-----CSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTT
T ss_pred HHHHHHHhccCHH-HHHHhc-----cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcC
Confidence 3456667777776 433322 123344544456667777888888877765432 1 1122222333
Q ss_pred ----------HHHHHcCCChHHHHHHhccCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 047840 104 ----------VDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTAC 173 (445)
Q Consensus 104 ----------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 173 (445)
+......|+...|..+...+...........+.... +...+...... ..++......+..++
T Consensus 151 ~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~---~p~~~~~~~~~-----~~~~~~~~~~~~~~l 222 (450)
T d1qsaa1 151 KQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLAN---NPNTVLTFART-----TGATDFTRQMAAVAF 222 (450)
T ss_dssp CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGGGHHHHHHH-----SCCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHh---ChHhHHHHHhc-----CCCChhhhHHHHHHH
Confidence 333444566666666665554433333444444332 22222222211 122333333333333
Q ss_pred Hc--cCChhHHHHHHHHHHHcCCCCchhh---hhHHHHHHHccCChHHHHHHhhcCCC--CChhhHHHHHHHHHhcCChH
Q 047840 174 AH--LGAITQGLWVHSYAKRYHLEKNVIL---ATAVVDMYSKCGHVHSALSVFEGISN--KDAGAWNAMISGVAMNGDAK 246 (445)
Q Consensus 174 ~~--~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~ 246 (445)
.+ ..+.+.+..++.............. ...+.......+..+.+...+..... .+.....-.+......+++.
T Consensus 223 ~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~~al~~~~~~ 302 (450)
T d1qsaa1 223 ASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGTGDRR 302 (450)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHHHHHHHcCChH
Confidence 33 3466777777777665432211111 11222233344556666666544332 23333333444556677888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHH
Q 047840 247 KSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEK 326 (445)
Q Consensus 247 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 326 (445)
.+...+..|... ......-.--+..++...|+.+.|..+|..+.. .++ -|..|.. .+.|..-. +
T Consensus 303 ~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~----~~~--fYG~LAa--~~Lg~~~~-------~ 366 (450)
T d1qsaa1 303 GLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ----QRG--FYPMVAA--QRIGEEYE-------L 366 (450)
T ss_dssp HHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----SCS--HHHHHHH--HHTTCCCC-------C
T ss_pred HHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc----CCC--hHHHHHH--HHcCCCCC-------C
Confidence 888887776432 122233334556777788888888888888763 233 3433332 12232100 0
Q ss_pred hcCCC--CCC-HH---HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHH
Q 047840 327 MGGLG--GGD-AN---VWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLI 395 (445)
Q Consensus 327 ~~~~~--~~~-~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 395 (445)
....+ .+. .. .-..-+..+...|....|...+..+.+.. ++.-...++....+.|.++.|+....+.
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~--~~~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 367 KIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred CcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 00000 011 10 11133566788999999999999887643 3556778899999999999999877654
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