Citrus Sinensis ID: 047848

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360
Protein Sequence
MAPEDDDSRIDSFQKERDARIALLEKENFELRQEVLRLKAQISSLKAHDNERKSMLWKKLQNPNTDTSPQKQTDFVKTQEFQNLDGETFRPRPGFQELEAGKERSMKIQTPVAFPAPPPPPLPSKFLAGSKTVRRVPEVVELYRSLTRKDAHMENRSNTTAAPVIAFTRNMIGEIENRSTYLSAIKTDVKKQKEFINFLIKEVESAVFDQISEVEAFVKWLDGELSSLVDERAVLKHFPQWPERKADTLREAACNYRDLKNLEQEVSSFEDNQKESLPQATRKMQALQDRRACWSKGTGKKYRDFQIPCDWMMDSGLIGQMKVSSLRLAKEYMKRFAGGFDAETIQAFEELKKVGLSSHK
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccccHcccccEccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mapedddsrIDSFQKERDARIALLEKENFELRQEVLRLKAQISSLKAHDNERKSMLWKklqnpntdtspqkqtdfvktqefqnldgetfrprpgfqeleagkersmkiqtpvafpappppplpskflagsktvrrvPEVVELYRSLTrkdahmenrsnttaapvIAFTRNMIGEIENRSTYLSAIKTDVKKQKEFINFLIKEVESAVFDQISEVEAFVKWLDGELSSLVDERAVLkhfpqwperkADTLREAACNYRDLKNLEQEVSSFEDNQKESLPQATRKMQALQDRRAcwskgtgkkyrdfqipcdwmmdsgligqmKVSSLRLAKEYMKRFAGGFDAETIQAFEELKKVGLSSHK
Flexible Loop (DISEMBL)
mapedddsridsfqkERDARIALLEKENFELRQEVLRLKAQISSLKAHDNERKSMLWKklqnpntdtspqkqtdfVKTQEfqnldgetfrprpGFQELEAGKERSMKIQTPvafpappppplpskflagsktvrrvPEVVELYRSltrkdahmenrsnttaapviafTRNMIGEIENRSTYLSAIKTDVKKQKEFINFLIKEVESAVFDQISEVEAFVKWLDGELSSLVDERAVLKhfpqwperkadTLREAACNYRDLKNLEQEVSSFEDNQKESLPQATRKMQALqdrracwskgtgkkyrdfQIPCDWMMDSGLIGQMKVSSLRLAKEYMKRFAGGFDAETIQAFEELkkvglsshk
Low Complexity Region (SEG)
MAPEDDDSRIDSFQKERDARIALLEKENFELRQEVLRLKAQISSLKAHDNERKSMLWKKLQNPNTDTSPQKQTDFVKTQEFQNLDGETFRPRPGFQELEAGKERSMKIQTpvafpappppplpSKFLAGSKTVRRVPEVVELYRSLTRKDAHMENRSNTTAAPVIAFTRNMIGEIENRSTYLSAIKTDVKKQKEFINFLIKEVESAVFDQISEVEAFVKWLDGELSSLVDERAVLKHFPQWPERKADTLREAACNYRDLKNLEQEVSSFEDNQKESLPQATRKMQALQDRRACWSKGTGKKYRDFQIPCDWMMDSGLIGQMKVSSLRLAKEYMKRFAGGFDAETIQAFEELKKVGLSSHK
Disordered region (IsUnstruct)
****************************F*L***VL****************************************************************************************************PEVVELYRS**************TAAPVIAFTRNMIGEIENRSTYLSAIKTDVKKQKEFINFLIKEVESAVFDQISEVEAFVKWLDGELSSLVDERAVLKHFPQWPERKADTLREAACNYR*********************************RACWSKGTGKKYRDFQIPCDWMMDSGLIGQMKVSSLRLAKEYMKRFAGGFDAETIQAFE***********
Disordered Region (DISOPRED)
******************************************************************************************************************************************VVEL***********************************RSTYLSAIKTDVKKQKEFINFLIKEVESAVFDQISEVEAFVKWLDGELSSLVDERAVLKHFPQWPERKADTLREAACNYRDLKNLEQEVSSFEDNQKESLPQATRKMQALQDRR*********KYRDFQIPCDWMMDSGLIGQMKVSSLRLAKEYMKRFAGGFDAETIQAFEE***V******
Disordered Region (DISEMBL)
**********DSFQKERDARIALLEKENFELRQEVLRLKAQISSLKAHDNERKSMLWKKLQN*********QTDFVKTQEFQNLDGETFRPRPGFQELEAGKERSMKIQTPVAFPAPPPPPLPSKFLAGSKTVRRVPEVVELYRSLTRKDAHMENRSNTTAAPVIAFTRNMIGEIENRSTYLSAIKTDVKKQKEFINFLIKEVESAVFDQISEVEAFVKWLDGELSSLVDERAVLKHFPQWPERKADTLREAACNYRDLKNLEQEVSSFEDNQKESLPQATRKMQALQDRRACWSKGTGKKYRDFQIPCDWMMDSGLIGQMKVSSLRLAKEYMKRFAGGFDAETIQAFEELK********
Disordered Region (DISPRO)
*****DDSRIDSFQKERDARIALLEKENFELRQEVLRLKAQISSLKAHDNERKSMLWKKLQN****************************************************PAPP****************RVPEV********R********************RNMIGEIENRSTYLSAIKTDVKKQKEFINFLIKEVESAVFDQISEVEAFVKWLDGELSSLVDERAVLKHFPQWPERKADTLREAACNYRDLKNLEQEVSSFEDNQKESLPQATRKMQALQDRRACWSKGTGKKYRDFQIPCDWMMDSGLIGQMKVSSLRLAKEYMKRFAGGFDAETIQAFEELKKVGL****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAPEDDDSRIDSFQKERDARxxxxxxxxxxxxxxxxxxxxxISSLKAHDNERKSMLWKKLQNPNTDTSPQKQTDFVKTQEFQNLDGETFRPRPGFQELEAGKERSMKIQTPVAFPAPPPPPLPSKFLAGSKTVRRVPEVVELYRSLTRKDAHMENRSNTTAAPVIAFTRNMIGEIENRSTYLSAIKTDVKKQKEFINFLIKEVESAVFDQISEVEAFVKWLDGELSSLVDERAVLKHFPQWPERKADTLREAACNYRDLKNLEQEVSSFxxxxxxxxxxxxxxxxxxxxxRACWSKGTGKKYRDFQIPCDWMMDSGLIGQMKVSSLRLAKEYMKRFAGGFDAETIQAFEELKKVGLSSHK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	360	2.2.26 [Sep-21-2011]
Q9LI74	1004	Protein CHUP1, chloroplas	no	no	0.608	0.218	0.422	8e-49
Q1PEB4	724	Uncharacterized protein A	no	no	0.352	0.175	0.272	0.0007

>sp|Q9LI74|CHUP1_ARATH Protein CHUP1, chloroplastic OS=Arabidopsis thaliana GN=CHUP1 PE=1 SV=1

 Score =  194 bits (493), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 111/263 (42%), Positives = 159/263 (60%), Gaps = 44/263 (16%)

Query: 133 VRRVPEVVELYRSLTRKDAHMENRSNTTAAPV---IAFTRNMIGEIENRSTYLSAIKTDV 189
           V R PE+VE Y+SL ++++  E   +  ++      A   NMIGEIENRST+L A+K DV
Sbjct: 718 VHRAPELVEFYQSLMKRESKKEGAPSLISSGTGNSSAARNNMIGEIENRSTFLLAVKADV 777

Query: 190 KKQKEFINFLIKEVESAVFDQISEVEAFVKWLDGELSSLVDERAVLKHFPQWPERKADTL 249
           + Q +F+  L  EV ++ F  I ++ AFV WLD ELS LVDERAVLKHF  WPE KAD L
Sbjct: 778 ETQGDFVQSLATEVRASSFTDIEDLLAFVSWLDEELSFLVDERAVLKHF-DWPEGKADAL 836

Query: 250 REAACNYRDLKNLEQEVSSFEDNQKESLPQATRKMQALQDR--RACWSKGTGK-----KY 302
           REAA  Y+DL  LE++V+SF D+   S   A +KM  L ++  ++ ++    +     +Y
Sbjct: 837 REAAFEYQDLMKLEKQVTSFVDDPNLSCEPALKKMYKLLEKVEQSVYALLRTRDMAISRY 896

Query: 303 RDFQIPCDWMMDSGLIGQMKVSSLRLAKEYMKR--------------------------- 335
           ++F IP DW+ D+G++G++K+SS++LAK+YMKR                           
Sbjct: 897 KEFGIPVDWLSDTGVVGKIKLSSVQLAKKYMKRVAYELDSVSGSDKDPNREFLLLQGVRF 956

Query: 336 ------FAGGFDAETIQAFEELK 352
                 FAGGFDAE+++AFEEL+
Sbjct: 957 AFRVHQFAGGFDAESMKAFEELR 979

Required for the positioning and movement of chloroplasts. Interacts with profilin and actin independent of its polymerization status. Regulates chloroplast localization by anchoring chloroplasts to the plasma membrane and forming a bridge to the actin cytoskeleton.
Arabidopsis thaliana (taxid: 3702)

>sp|Q1PEB4|Y4498_ARATH Uncharacterized protein At4g04980 OS=Arabidopsis thaliana GN=At4g04980 PE=2 SV=1

 Score = 45.4 bits (106), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 64/147 (43%), Gaps = 20/147 (13%)

Query: 133 VRRVPEVVELYRSLTRKDAHMENRS------------NTTA--APVIAFTRNM---IGEI 175
           +RR  ++  LY +L  K   +E R             N+ A  +PV      M   + E+
Sbjct: 434 LRRSAQIANLYWALKGK---LEGRGVEGKTKKASKGQNSVAEKSPVKVARSGMADALAEM 490

Query: 176 ENRSTYLSAIKTDVKKQKEFINFLIKEVESAVFDQISEVEAFVKWLDGELSSLVDERAVL 235
             RS+Y   I+ DV+K  + I  L   + S     + E+  F   ++  L  L DE  VL
Sbjct: 491 TKRSSYFQQIEEDVQKYAKSIEELKSSIHSFQTKDMKELLEFHSKVESILEKLTDETQVL 550

Query: 236 KHFPQWPERKADTLREAACNYRDLKNL 262
             F  +PE+K + +R A   Y+ L  +
Sbjct: 551 ARFEGFPEKKLEVIRTAGALYKKLDGI 577

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	360
224105933	388	predicted protein [Populus trichocarpa]	0.955	0.886	0.588	1e-111
356551882	449	PREDICTED: protein CHUP1, chloroplastic-	0.986	0.790	0.526	1e-106
356498962	460	PREDICTED: protein CHUP1, chloroplastic-	0.977	0.765	0.524	1e-104
356541747	494	PREDICTED: protein CHUP1, chloroplastic-	0.958	0.698	0.518	1e-103
356541772	474	PREDICTED: protein CHUP1, chloroplastic-	0.930	0.706	0.519	1e-100
225434530	433	PREDICTED: protein CHUP1, chloroplastic-	0.994	0.826	0.544	2e-98
357490921	461	Protein CHUP1 [Medicago truncatula] gi|3	0.975	0.761	0.487	7e-98
297849000	391	hypothetical protein ARALYDRAFT_470733 [	0.947	0.872	0.514	5e-94
15222306	392	uncharacterized protein [Arabidopsis tha	0.938	0.862	0.501	8e-93
255561205	326	conserved hypothetical protein [Ricinus	0.633	0.699	0.606	1e-83

>gi|224105933|ref|XP_002313983.1| predicted protein [Populus trichocarpa] gi|222850391|gb|EEE87938.1| predicted protein [Populus trichocarpa]

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 237/403 (58%), Positives = 273/403 (67%), Gaps = 59/403 (14%)

Query: 1   MAPEDDDSRIDSFQKERDA---RIALLEKENFELRQEVLRLKAQISSLKAHDNERKSMLW 57
           M  E+D+S I   +KE +A   R   LEKEN EL+QEV+RLKAQISSLKAHDNERKSMLW
Sbjct: 1   MRKEEDESLIIYLKKEVEAALLRTDSLEKENQELQQEVVRLKAQISSLKAHDNERKSMLW 60

Query: 58  KKLQNP----NTDTSPQKQTDFVKTQEFQNLDGETFRPRPGFQELEAGKERSMKIQTPVA 113
           KKLQNP     TD   QKQ+DFVK             P    +E+ + K        P  
Sbjct: 61  KKLQNPIDSSKTDVFLQKQSDFVKVT-----------PSSP-KEVNSNKLSPAPAPAPAP 108

Query: 114 FPAPPPPPLPSKFLAGSKTVRRVPEVVELYRSLTRKDAHMENRSNTTAAPVIAFTRNMIG 173
            P PPP     K   GSKTVRRVPEV E YR +TR+D HMENR N+ A PV+AFT +MIG
Sbjct: 109 PPPPPP----PKMSVGSKTVRRVPEVAEFYRLVTRRDVHMENRINSAAIPVVAFTPSMIG 164

Query: 174 EIENRSTYLSAIKTDVKKQKEFINFLIKEVESAVFDQISEVEAFVKWLDGELSSLVDERA 233
           EIENRSTYLSAIK+DV+KQKEFINFLIKEVESA F +IS+V+AFVKWLD ELSSLVDERA
Sbjct: 165 EIENRSTYLSAIKSDVEKQKEFINFLIKEVESAAFKEISDVKAFVKWLDDELSSLVDERA 224

Query: 234 VLKHFPQWPERKADTLREAACNYRDLKNLEQEVSSFEDNQKESLPQATRKMQALQDRRAC 293
           VLKHFPQWPERKAD LREAA NYRDL NLE EVSSF+DN+KE L +A  +MQALQDR   
Sbjct: 225 VLKHFPQWPERKADALREAAFNYRDLINLESEVSSFQDNKKEPLIRALGRMQALQDRLER 284

Query: 294 WSKGTG-------KKYRDFQIPCDWMMDSGLIGQMKVSSLRLAKEYMKR----------- 335
               T        K+YRD QIP +W++++GLIGQMK+SSLRLAK+Y+KR           
Sbjct: 285 SVNNTERTRESMIKRYRDLQIPWEWLLNTGLIGQMKLSSLRLAKDYLKRITKELQLNECS 344

Query: 336 ------------------FAGGFDAETIQAFEELKKVGLSSHK 360
                             FAGGFDAET  AF+ELKK+G+ S K
Sbjct: 345 GEENLLLQGARFAYRVHQFAGGFDAETTHAFQELKKIGMGSLK 387

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356551882|ref|XP_003544301.1| PREDICTED: protein CHUP1, chloroplastic-like [Glycine max]

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 226/429 (52%), Positives = 283/429 (65%), Gaps = 74/429 (17%)

Query: 1   MAPEDDDSRIDSFQKERDARIA---LLEKENFELRQEVLRLKAQISSLKAHDNERKSMLW 57
           M  E+++S I S +K+ +  +A   LL+ EN ELR+EV+RLK+QI SLKAH+ ERKS+LW
Sbjct: 1   MLQEENESEITSLKKKLEVHMARNELLQNENQELREEVVRLKSQIISLKAHNMERKSVLW 60

Query: 58  KKLQ-----NPNTDTSPQKQTDFVKTQEFQ-NLDGETFRPRPGFQELEA----------- 100
           KKLQ     N N++   Q +   V+    + +   E     PGFQ+  A           
Sbjct: 61  KKLQKSIDDNNNSEAHQQHKAPPVQVITCEKSSQNENVHTNPGFQDSAAPRKDKPAIVPP 120

Query: 101 ----------------GKERSMKIQTPVAFPAPPPPPLPSKFLAGSKTVRRVPEVVELYR 144
                            KE+ +K+Q  +A P PP PP  S  L G K+VRRVPEV+ELYR
Sbjct: 121 APPPRPSPTLLLPPLHKKEKGLKVQPTIAPPPPPTPPKLS--LVGLKSVRRVPEVIELYR 178

Query: 145 SLTRKDAHMENRSNTTAAPVIAFTRNMIGEIENRSTYLSAIKTDVKKQKEFINFLIKEVE 204
           SLTRKDA+MENR ++   P +AFTRNMI EIENRSTYLSAIK++V++Q EFI+FLIKEVE
Sbjct: 179 SLTRKDANMENRIHSNGIPTVAFTRNMIEEIENRSTYLSAIKSEVQRQGEFISFLIKEVE 238

Query: 205 SAVFDQISEVEAFVKWLDGELSSLVDERAVLKHFPQWPERKADTLREAACNYRDLKNLEQ 264
           S  F  +SEVE+FVKWLDGELSSLVDER+VLKHFPQWPE+K D LREAACNYRDLKNLE 
Sbjct: 239 STSFADVSEVESFVKWLDGELSSLVDERSVLKHFPQWPEQKVDALREAACNYRDLKNLES 298

Query: 265 EVSSFEDNQKESLPQATRKMQALQDR--RACWSK-----GTGKKYRDFQIPCDWMMDSGL 317
           EVSS++DN KE L Q  RK+QALQDR  R+  +K      T K+YR+F IP +WM+D+G+
Sbjct: 299 EVSSYDDNPKEPLVQTLRKIQALQDRLERSVSAKERMRESTSKRYRNFHIPWEWMLDTGI 358

Query: 318 IGQMKVSSLRLAKEYMKR-----------------------------FAGGFDAETIQAF 348
           IGQMK+SSL++AKE+MKR                             FAGGFD ETI+AF
Sbjct: 359 IGQMKLSSLKMAKEFMKRITKELESNELLQEDNLFVQGVKFAFRVHQFAGGFDTETIEAF 418

Query: 349 EELKKVGLS 357
           EELKK+G +
Sbjct: 419 EELKKIGCA 427

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356498962|ref|XP_003518314.1| PREDICTED: protein CHUP1, chloroplastic-like [Glycine max]

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 223/425 (52%), Positives = 274/425 (64%), Gaps = 73/425 (17%)

Query: 4   EDDDSRIDSFQKERDARIA---LLEKENFELRQEVLRLKAQISSLKAHDNERKSMLWKKL 60
           E++   I S +K+ +  +A   LL KEN ELR+EV+RLK+QI SLKAH+ ERKS+LWKK+
Sbjct: 5   ENESEIITSLKKKLEVHMARNELLLKENQELREEVVRLKSQIISLKAHNMERKSVLWKKI 64

Query: 61  QNPNTDTSPQKQTDFVKTQEFQNLDGE------TFRPRPGFQELE--------------- 99
           Q    D +  +     K    Q + GE           P F++                 
Sbjct: 65  QKSIDDNNNSEAHQQHKAPPVQVITGEKSSQYENVHTNPNFKDTTPKKDKPAAIVTPAPP 124

Query: 100 -----------AGKERSMKIQTPVAFPAPPPPPLPSKFLAGSKTVRRVPEVVELYRSLTR 148
                        KE+ +K+Q  +A P PP PP  S    G KT+RRVPEV+ELYRSLT+
Sbjct: 125 PRPSPTLLLPLHKKEKGLKVQQAIAPPPPPTPPKLSS--VGLKTLRRVPEVIELYRSLTQ 182

Query: 149 KDAHMENRSNTTAAPVIAFTRNMIGEIENRSTYLSAIKTDVKKQKEFINFLIKEVESAVF 208
           KDA+MENR ++   P +AFTRNMI EIENRSTYLSAIK++V++Q EFI+FLIKEVES  F
Sbjct: 183 KDANMENRIHSNGIPTVAFTRNMIEEIENRSTYLSAIKSEVQRQGEFISFLIKEVESTSF 242

Query: 209 DQISEVEAFVKWLDGELSSLVDERAVLKHFPQWPERKADTLREAACNYRDLKNLEQEVSS 268
             +SEVEAFVKWLDGELSSLVDER+VLKHFPQWPE+K D LREAACNYRDLKNLE EVSS
Sbjct: 243 ADVSEVEAFVKWLDGELSSLVDERSVLKHFPQWPEQKVDALREAACNYRDLKNLESEVSS 302

Query: 269 FEDNQKESLPQATRKMQALQDR--RACWSK-----GTGKKYRDFQIPCDWMMDSGLIGQM 321
           +EDN KESL Q  RK+QALQDR  R+  +K      T K+Y++F IP +WM+D G+IGQM
Sbjct: 303 YEDNPKESLAQTLRKIQALQDRLERSVSAKERMRESTSKRYKNFHIPWEWMLDIGIIGQM 362

Query: 322 KVSSLRLAKEYMKR-----------------------------FAGGFDAETIQAFEELK 352
           K+SSLRLAKE+MKR                             FAGGFD ETIQAF+ELK
Sbjct: 363 KLSSLRLAKEFMKRMTKELVSNELLQEDNLFVQGVKFAFRVHQFAGGFDLETIQAFQELK 422

Query: 353 KVGLS 357
           K+G +
Sbjct: 423 KIGCA 427

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356541747|ref|XP_003539335.1| PREDICTED: protein CHUP1, chloroplastic-like [Glycine max]

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 222/428 (51%), Positives = 271/428 (63%), Gaps = 83/428 (19%)

Query: 5   DDDSRIDSFQKERDARI---ALLEKENFELRQEVLRLKAQISSLKAHDNERKSMLWKKLQ 61
           ++DS I   +K    ++     LEKEN +LRQEV RLK+QI SLKAH+ ERKSMLWKK+Q
Sbjct: 53  ENDSEITHLKKNLKVQMERNVSLEKENKDLRQEVARLKSQIMSLKAHNIERKSMLWKKIQ 112

Query: 62  NP----NTDTSPQKQTDFVKTQEFQNLDGETFRPRPGFQELEAGKERSMKIQTPVAFPAP 117
                 N+DT   K    V   E ++   E        QE    K+RS+K+        P
Sbjct: 113 KSMDGNNSDTLQHKAAVKVIMLE-KSPPNERVHTNSDLQETPIVKDRSVKV--------P 163

Query: 118 PPPP-----LPS--------------------------KFLAGSKTVRRVPEVVELYRSL 146
           PP P     LPS                          K L G K+VRRVPEV+ELYRSL
Sbjct: 164 PPAPSSNPLLPSQKTEKGMKVQPLALPRTAPPPPPTPPKSLVGLKSVRRVPEVIELYRSL 223

Query: 147 TRKDAHMENRSNTTAAPVIAFTRNMIGEIENRSTYLSAIKTDVKKQKEFINFLIKEVESA 206
           TRKDA+ +N+ +T   P  AFTRNMI EIENRST+LSAIK+DV++Q+EFI+ LIKEVESA
Sbjct: 224 TRKDANNDNKISTNGTPAAAFTRNMIEEIENRSTFLSAIKSDVQRQREFISLLIKEVESA 283

Query: 207 VFDQISEVEAFVKWLDGELSSLVDERAVLKHFPQWPERKADTLREAACNYRDLKNLEQEV 266
            +  ISEVEAFVKWLDGELSSLVDER+VLKHFP WPE+K D LREA+CNYR+LK+LE EV
Sbjct: 284 AYADISEVEAFVKWLDGELSSLVDERSVLKHFPHWPEQKTDALREASCNYRNLKSLESEV 343

Query: 267 SSFEDNQKESLPQATRKMQALQDR--RACWS-----KGTGKKYRDFQIPCDWMMDSGLIG 319
           SSFE+N KE L QA +KMQALQDR  R+  S     +   K+YR F IP +WM+D+GLIG
Sbjct: 344 SSFENNPKEPLAQALKKMQALQDRLERSVNSAEKTRESASKRYRSFHIPWEWMLDTGLIG 403

Query: 320 QMKVSSLRLAKEYMKR-----------------------------FAGGFDAETIQAFEE 350
           QMK+SSL+LA+E+MKR                             FAGGFD+ETIQAF+E
Sbjct: 404 QMKLSSLKLAREFMKRVTKELESNEVSKEDNLLVQGVRFAFRVHQFAGGFDSETIQAFQE 463

Query: 351 LKKVGLSS 358
           LKK+G +S
Sbjct: 464 LKKIGSAS 471

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356541772|ref|XP_003539347.1| PREDICTED: protein CHUP1, chloroplastic-like [Glycine max]

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 217/418 (51%), Positives = 263/418 (62%), Gaps = 83/418 (19%)

Query: 14  QKERDARIALLEKENFELRQEVLRLKAQISSLKAHDNERKSMLWKKLQNP----NTDTSP 69
           Q ER+     LEKEN   RQEV RLK+QI SLKAH+ ERKSMLWKK+Q      N+DT  
Sbjct: 68  QMERNVS---LEKENKNHRQEVARLKSQIMSLKAHNIERKSMLWKKIQKAMDGNNSDTLQ 124

Query: 70  QKQTDFVKTQEFQNLDGETFRPRPGFQELEAGKERSMKIQTPVAFPAPPPPP-----LPS 124
            K    V   E ++   E         E    K+RS+K+        PPP P     LPS
Sbjct: 125 HKAAVKVTMLE-KSPPNERVHTNSDLLETPKVKDRSVKV--------PPPAPSSNPLLPS 175

Query: 125 --------------------------KFLAGSKTVRRVPEVVELYRSLTRKDAHMENRSN 158
                                     K L G K+VRRVPEV+ELYRSLTRKDA+ +N+ +
Sbjct: 176 HKTEKGMKVQPLALPRTAPPPPPTPPKSLVGLKSVRRVPEVIELYRSLTRKDANNDNKIS 235

Query: 159 TTAAPVIAFTRNMIGEIENRSTYLSAIKTDVKKQKEFINFLIKEVESAVFDQISEVEAFV 218
           T   P  AFTRNMI EIENRST+LSAIK++V++Q+EFI+FLIKEVESA +  ISEVEAFV
Sbjct: 236 TNGTPAAAFTRNMIEEIENRSTFLSAIKSEVQRQREFISFLIKEVESATYADISEVEAFV 295

Query: 219 KWLDGELSSLVDERAVLKHFPQWPERKADTLREAACNYRDLKNLEQEVSSFEDNQKESLP 278
           KWLDGELSSLVDER+VLKHFP WPE+K D LREA+CNYR+LK+LE EVSSFE+N KE L 
Sbjct: 296 KWLDGELSSLVDERSVLKHFPHWPEQKTDALREASCNYRNLKSLESEVSSFENNPKEPLA 355

Query: 279 QATRKMQALQDR--RACWS-----KGTGKKYRDFQIPCDWMMDSGLIGQMKVSSLRLAKE 331
           QA +KMQALQDR  R+  S     +    +YR F IP +WM+D+GLIGQMK+SSL+L++E
Sbjct: 356 QALKKMQALQDRLERSVNSAERTRESASIRYRSFHIPWEWMLDTGLIGQMKLSSLKLSRE 415

Query: 332 YMKR-----------------------------FAGGFDAETIQAFEELKKVGLSSHK 360
           +MKR                             FAGGFD+ETIQAF+ELKK+  +S K
Sbjct: 416 FMKRVTKELESNEASKEDNLLVQGVRFAFRVHQFAGGFDSETIQAFQELKKIVSASTK 473

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434530|ref|XP_002278694.1| PREDICTED: protein CHUP1, chloroplastic-like [Vitis vinifera]

 Score =  365 bits (937), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 231/424 (54%), Positives = 280/424 (66%), Gaps = 66/424 (15%)

Query: 1   MAPEDDDSRIDSFQKERDARIA---LLEKENFELRQEVLRLKAQISSLKAHDNERKSMLW 57
           M  +DDDS I    KE ++ +A    LEKEN EL+QEV RLKAQISSLKAHDNERKSMLW
Sbjct: 1   MPRDDDDSGITFLNKELESSLARNNALEKENQELKQEVARLKAQISSLKAHDNERKSMLW 60

Query: 58  KKLQ----NPNTDTSPQKQTDFVKTQEFQNLDGETFRPRPGFQELEAGKER--------- 104
           KKLQ    N N D   QK T+ V+T E + L  E   PR    E    KER         
Sbjct: 61  KKLQSSFDNSNADAKQQKPTNTVRTPEPK-LAVENLCPRSDSPESAPRKERPARIPKPPP 119

Query: 105 --------SMK----IQTPVAFPAPPPPPLPSKFLAGSKTVRRVPEVVELYRSLTRKDAH 152
                   S+K     + P+A P P PPPLPSK LAGSK VRRVPEV+E YRSLTR+D  
Sbjct: 120 RPTTATPPSLKEVNGNKVPLAPPPPRPPPLPSKLLAGSKAVRRVPEVMEFYRSLTRRDPQ 179

Query: 153 MENRSNTTAAPVIAFTRNMIGEIENRSTYLSAIKTDVKKQKEFINFLIKEVESAVFDQIS 212
           +E R+N    P +  +RNMIGEIENRS++L AIK+DV+ Q EFIN L +EVE+A + +IS
Sbjct: 180 VE-RANPVGIPTVGNSRNMIGEIENRSSHLMAIKSDVETQGEFINSLTREVEAAAYTEIS 238

Query: 213 EVEAFVKWLDGELSSLVDERAVLKHFPQWPERKADTLREAACNYRDLKNLEQEVSSFEDN 272
           +VEAFVKWLD ELS LVDERAVLKHFP+WPERKAD LREAA +YRDLKNLE EVSSFEDN
Sbjct: 239 DVEAFVKWLDEELSYLVDERAVLKHFPKWPERKADALREAAFSYRDLKNLEAEVSSFEDN 298

Query: 273 QKESLPQATRKMQALQDR--RACWS-----KGTGKKYRDFQIPCDWMMDSGLIGQMKVSS 325
            K+ L Q+ R++QALQDR  R+  +      G  K+Y++FQIP +WM+++GLIGQ+K+SS
Sbjct: 299 TKQPLTQSLRRIQALQDRVERSVANMEKMRDGASKRYKEFQIPWEWMLNTGLIGQIKISS 358

Query: 326 LRLAKEYMKR-----------------------------FAGGFDAETIQAFEELKKVGL 356
            +LAK+YMKR                             FAGGFD +T+ AFEELK+VG 
Sbjct: 359 TKLAKKYMKRIIKEMQSIECSQEDNLMLQGVRFAFRVHQFAGGFDVDTMHAFEELKRVGT 418

Query: 357 SSHK 360
            S+K
Sbjct: 419 GSNK 422

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357490921|ref|XP_003615748.1| Protein CHUP1 [Medicago truncatula] gi|355517083|gb|AES98706.1| Protein CHUP1 [Medicago truncatula]

 Score =  363 bits (932), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 213/437 (48%), Positives = 270/437 (61%), Gaps = 86/437 (19%)

Query: 4   EDDDSRIDSFQKERDARIA---LLEKENFELRQEVLRLKAQISSLKAHDNERKSMLWKKL 60
           E++     SF+K  +  +A   LL+KEN EL++EV RLK+QI SLKAH+ ERK++LWKK+
Sbjct: 5   ENESEITTSFKKRLEIHMARNELLQKENQELKEEVSRLKSQIISLKAHNMERKTILWKKI 64

Query: 61  Q----NPNTDTS----PQKQTDFV-KTQEFQNLDGETFRPRPGFQEL------------- 98
           Q    + N+D+     P  Q     K+ E Q+    +  PR     +             
Sbjct: 65  QKSIDDNNSDSHHTLKPALQAIMCEKSSENQDFQDSSTSPRKEKSSIVLPPTPPPKPAST 124

Query: 99  ----EAGKERSMKIQTPVAFPAPPPPPLPSKFLAGSKTVRRVPEVVELYRSLTRKDAHME 154
                   E+ MK+Q   A P PP P   SK   G KTVRRVPEV+ELYRSLTRKDA++E
Sbjct: 125 LFSPSHKNEKGMKMQPTAAPPPPPTP---SKSSIGLKTVRRVPEVIELYRSLTRKDANIE 181

Query: 155 NRSNTTAAPVIAFTRNMIGEIENRSTYLSAIKTDVKKQKEFINFLIKEVESAVFDQISEV 214
           N+++    P +AFTRNMI EIENRS +LSAIK++V+ QKEFI+FLIK+VESA +  ISEV
Sbjct: 182 NKTHHNGIPAVAFTRNMIEEIENRSKHLSAIKSEVQSQKEFISFLIKQVESASYADISEV 241

Query: 215 EAFVKWLDGELSSLVDERAVLKHFPQWPERKADTLREAACNYRDLKNLEQEVSSFEDNQK 274
           E F+KWLDGELS+LVDER+VLKHFPQWPE+K D LREAACNYR+LKNLE EVSS+EDN K
Sbjct: 242 ETFIKWLDGELSTLVDERSVLKHFPQWPEQKVDALREAACNYRELKNLESEVSSYEDNPK 301

Query: 275 ESLPQATRKMQALQDRRACWS-----------------------KGTGKKYRDFQIPCDW 311
           E +  A +++QALQDRRAC                         + + KKYR+F IP +W
Sbjct: 302 EPISMALKRIQALQDRRACTKIVELSLTKVFELEGSVSSKERIRESSSKKYRNFHIPWEW 361

Query: 312 MMDSGLIGQMKVSSLRLAKEYMKR-------------------------------FAGGF 340
           MMD+GL+GQ+K+ SLRLAKE+MKR                               FAGGF
Sbjct: 362 MMDTGLVGQIKLCSLRLAKEFMKRITKEIKSHEALHEDNNNLLLQGVKFAFRVHQFAGGF 421

Query: 341 DAETIQAFEELKKVGLS 357
           D +T Q F ELKKVG +
Sbjct: 422 DPDTTQTFLELKKVGCA 438

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297849000|ref|XP_002892381.1| hypothetical protein ARALYDRAFT_470733 [Arabidopsis lyrata subsp. lyrata] gi|297338223|gb|EFH68640.1| hypothetical protein ARALYDRAFT_470733 [Arabidopsis lyrata subsp. lyrata]

 Score =  350 bits (899), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 208/404 (51%), Positives = 255/404 (63%), Gaps = 63/404 (15%)

Query: 1   MAPE-DDDSRIDSFQKERDARIAL---LEKENFELRQEVLRLKAQISSLKAHDNERKSML 56
           M P  +DDS +    KE  A +     LEK+N ELRQEV RL+A +S+LKAHDNERKS+L
Sbjct: 1   MLPNGEDDSDLMRLVKELQASLVRNDKLEKDNHELRQEVARLRAHVSNLKAHDNERKSVL 60

Query: 57  WKKLQNP----NTDTSPQKQTDFVKTQEFQNLDGETFR---PRPGFQELEAGKERSMKIQ 109
           WKKLQ+     NTD S  K  + VK+    N  G+  R   P+P  QE            
Sbjct: 61  WKKLQSSYDGSNTDGSNLKAPESVKS----NTKGQEIRNPNPKPMVQE------------ 104

Query: 110 TPVAFPAPPPPPLPSKFLAGSKTVRRVPEVVELYRSLTRKDAHMENRSNTTAAPVIAFTR 169
            P A   PPPPPLPSK   G ++VRR PEVVELYR+LT++++ + N+ N       AF+R
Sbjct: 105 QPTAIKPPPPPPLPSKTTLGKRSVRRAPEVVELYRALTKRESRVGNKINQNGVLSPAFSR 164

Query: 170 NMIGEIENRSTYLSAIKTDVKKQKEFINFLIKEVESAVFDQISEVEAFVKWLDGELSSLV 229
           NMIGEIENRS YLS IK+D  + ++ I+ LI +VE A F  ISEVE FVKW+D ELSSLV
Sbjct: 165 NMIGEIENRSKYLSDIKSDTDRHRDHIHILISKVEGATFTDISEVETFVKWIDEELSSLV 224

Query: 230 DERAVLKHFPQWPERKADTLREAACNYRDLKNLEQEVSSFEDNQKESLPQATRKMQALQD 289
           DERAVLKHFP+WPERKAD LREAACNY+ LKNLE E+ SF+DN KESL QA +++Q+LQD
Sbjct: 225 DERAVLKHFPKWPERKADYLREAACNYKRLKNLEIEILSFKDNPKESLTQALQRIQSLQD 284

Query: 290 R-------RACWSKGTGKKYRDFQIPCDWMMDSGLIGQMKVSSLRLAKEYMKR------- 335
           R              TGK+Y+DFQIP +WM+D+GLIGQ+K  SLRLA+EYMKR       
Sbjct: 285 RLEENVNNTEKMRDSTGKRYKDFQIPWEWMLDTGLIGQLKYRSLRLAQEYMKRISNELES 344

Query: 336 ----------------------FAGGFDAETIQAFEELKKVGLS 357
                                 FAGGFD ET+  F ELK +  S
Sbjct: 345 NGGAKEGNLMLQGVRFAYTIHQFAGGFDGETLGIFHELKNISTS 388

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15222306|ref|NP_172192.1| uncharacterized protein [Arabidopsis thaliana] gi|8954035|gb|AAF82209.1|AC067971_17 Contains similarity to a hypothetical protein F28J12.220 gi|7486298 from Arabidopsis thaliana BAC F28J12 gb|AL021710. It contains a bZIP transcription factor domain PF|00170 [Arabidopsis thaliana] gi|332189957|gb|AEE28078.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  346 bits (888), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 201/401 (50%), Positives = 251/401 (62%), Gaps = 63/401 (15%)

Query: 1   MAPE-DDDSRIDSFQKERDARIAL---LEKENFELRQEVLRLKAQISSLKAHDNERKSML 56
           M P  +DDS +    KE  A +     LEKEN ELRQEV RL+AQ+S+LK+H+NERKSML
Sbjct: 1   MLPNGEDDSDLLRLVKELQAYLVRNDKLEKENHELRQEVARLRAQVSNLKSHENERKSML 60

Query: 57  WKKLQNP----NTDTSPQKQTDFVKTQEFQNLDGETFR---PRPGFQELEAGKERSMKIQ 109
           WKKLQ+     NTD S  K  + VK+    N  G+  R   P+P  Q    G+  + K  
Sbjct: 61  WKKLQSSYDGSNTDGSNLKAPESVKS----NTKGQEVRNPNPKPTIQ----GQSTATKPP 112

Query: 110 TPVAFPAPPPPPLPSKFLAGSKTVRRVPEVVELYRSLTRKDAHMENRSNTTAAPVIAFTR 169
            P   P        SK   G ++VRR PEVVE YR+LT++++HM N+ N       AF R
Sbjct: 113 PPPPLP--------SKRTLGKRSVRRAPEVVEFYRALTKRESHMGNKINQNGVLSPAFNR 164

Query: 170 NMIGEIENRSTYLSAIKTDVKKQKEFINFLIKEVESAVFDQISEVEAFVKWLDGELSSLV 229
           NMIGEIENRS YLS IK+D  + ++ I+ LI +VE+A F  ISEVE FVKW+D ELSSLV
Sbjct: 165 NMIGEIENRSKYLSDIKSDTDRHRDHIHILISKVEAATFTDISEVETFVKWIDEELSSLV 224

Query: 230 DERAVLKHFPQWPERKADTLREAACNYRDLKNLEQEVSSFEDNQKESLPQATRKMQALQD 289
           DERAVLKHFP+WPERK D+LREAACNY+  KNL  E+ SF+DN K+SL QA +++Q+LQD
Sbjct: 225 DERAVLKHFPKWPERKVDSLREAACNYKRPKNLGNEILSFKDNPKDSLTQALQRIQSLQD 284

Query: 290 R-------RACWSKGTGKKYRDFQIPCDWMMDSGLIGQMKVSSLRLAKEYMKR------- 335
           R              TGK+Y+DFQIP +WM+D+GLIGQ+K SSLRLA+EYMKR       
Sbjct: 285 RLEESVNNTEKMRDSTGKRYKDFQIPWEWMLDTGLIGQLKYSSLRLAQEYMKRIAKELES 344

Query: 336 ----------------------FAGGFDAETIQAFEELKKV 354
                                 FAGGFD ET+  F ELKK+
Sbjct: 345 NGSGKEGNLMLQGVRFAYTIHQFAGGFDGETLSIFHELKKI 385

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561205|ref|XP_002521614.1| conserved hypothetical protein [Ricinus communis] gi|223539169|gb|EEF40763.1| conserved hypothetical protein [Ricinus communis]

 Score =  316 bits (809), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 160/264 (60%), Positives = 194/264 (73%), Gaps = 36/264 (13%)

Query: 133 VRRVPEVVELYRSLTRKDAHMENRSNTTAAPVIAFTRNMIGEIENRSTYLSAIKTDVKKQ 192
           +RRV EVVE YR LT+K+A++EN+ N+   PV AFT NMIGEIENRS++LSAIK+DV+K+
Sbjct: 62  MRRVLEVVEFYRFLTKKNANLENKGNSVTTPVTAFTLNMIGEIENRSSHLSAIKSDVEKR 121

Query: 193 KEFINFLIKEVESAVFDQISEVEAFVKWLDGELSSLVDERAVLKHFPQWPERKADTLREA 252
           +EFIN+LIKEVE+A F  IS+VE FVKWLD EL+SLVDERAVLKHFP+WPERKAD LREA
Sbjct: 122 REFINYLIKEVETATFKDISQVEKFVKWLDVELNSLVDERAVLKHFPEWPERKADALREA 181

Query: 253 ACNYRDLKNLEQEVSSFEDNQKESLPQATRKMQALQDRRAC-------WSKGTGKKYRDF 305
           A NYRDL+NL+ EV SFEDN KE L +A  KMQALQDR            + T K+YRDF
Sbjct: 182 AFNYRDLRNLDSEVLSFEDNPKEPLTKAVGKMQALQDRLENSVNNAERTRESTIKRYRDF 241

Query: 306 QIPCDWMMDSGLIGQMKVSSLRLAKEYMKR-----------------------------F 336
           QIP +W++D+GLIGQMK+SSLR+AK+Y+KR                             F
Sbjct: 242 QIPWEWLLDAGLIGQMKLSSLRIAKQYIKRITKELQINDCLFEENLLLQGARFAYRVHQF 301

Query: 337 AGGFDAETIQAFEELKKVGLSSHK 360
           AGGFD +TI AF+ELKKVG SSH+
Sbjct: 302 AGGFDTDTINAFQELKKVGTSSHR 325

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	360
TAIR|locus:2007477	392	AT1G07120 "AT1G07120" [Arabido	0.891	0.818	0.526	4.5e-82
TAIR|locus:2831359	642	AT4G18570 [Arabidopsis thalian	0.594	0.333	0.513	1.3e-57
TAIR|locus:2102385	1004	CHUP1 "CHLOROPLAST UNUSUAL POS	0.591	0.212	0.450	6.8e-51
TAIR|locus:2007755	558	AT1G48280 "AT1G48280" [Arabido	0.583	0.376	0.431	1.9e-50

TAIR|locus:2007477 AT1G07120 "AT1G07120" [Arabidopsis thaliana (taxid:3702)]

 Score = 823 (294.8 bits), Expect = 4.5e-82, P = 4.5e-82
 Identities = 187/355 (52%), Positives = 235/355 (66%)

Query:     1 MAPE-DDDSRIDSFQKERDARIAL---LEKENFELRQEVLRLKAQISSLKAHDNERKSML 56
             M P  +DDS +    KE  A +     LEKEN ELRQEV RL+AQ+S+LK+H+NERKSML
Sbjct:     1 MLPNGEDDSDLLRLVKELQAYLVRNDKLEKENHELRQEVARLRAQVSNLKSHENERKSML 60

Query:    57 WKKLQNP----NTDTSPQKQTDFVKTQEFQNLDGETFR---PRPGFQELEAGKERSMKIQ 109
             WKKLQ+     NTD S  K  + VK+    N  G+  R   P+P  Q    G+  + K  
Sbjct:    61 WKKLQSSYDGSNTDGSNLKAPESVKS----NTKGQEVRNPNPKPTIQ----GQSTATKPP 112

Query:   110 TXXXXXXXXXXXXXSKFLAGSKTVRRVPEVVELYRSLTRKDAHMENRSNTTAAPVIAFTR 169
                           SK   G ++VRR PEVVE YR+LT++++HM N+ N       AF R
Sbjct:   113 PPPPLP--------SKRTLGKRSVRRAPEVVEFYRALTKRESHMGNKINQNGVLSPAFNR 164

Query:   170 NMIGEIENRSTYLSAIKTDVKKQKEFINFLIKEVESAVFDQISEVEAFVKWLDGELSSLV 229
             NMIGEIENRS YLS IK+D  + ++ I+ LI +VE+A F  ISEVE FVKW+D ELSSLV
Sbjct:   165 NMIGEIENRSKYLSDIKSDTDRHRDHIHILISKVEAATFTDISEVETFVKWIDEELSSLV 224

Query:   230 DERAVLKHFPQWPERKADTLREAACNYRDLKNLEQEVSSFEDNQKESLPQATRKMQALQD 289
             DERAVLKHFP+WPERK D+LREAACNY+  KNL  E+ SF+DN K+SL QA +++Q+LQD
Sbjct:   225 DERAVLKHFPKWPERKVDSLREAACNYKRPKNLGNEILSFKDNPKDSLTQALQRIQSLQD 284

Query:   290 R-------RACWSKGTGKKYRDFQIPCDWMMDSGLIGQMKVSSLRLAKEYMKRFA 337
             R              TGK+Y+DFQIP +WM+D+GLIGQ+K SSLRLA+EYMKR A
Sbjct:   285 RLEESVNNTEKMRDSTGKRYKDFQIPWEWMLDTGLIGQLKYSSLRLAQEYMKRIA 339

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009941 "chloroplast envelope" evidence=IDA

TAIR|locus:2831359 AT4G18570 [Arabidopsis thaliana (taxid:3702)]

 Score = 524 (189.5 bits), Expect = 1.3e-57, Sum P(2) = 1.3e-57
 Identities = 118/230 (51%), Positives = 154/230 (66%)

Query:   127 LAGSKTVRRVPEVVELYRSLTRKDAHMENRSNT----TAAPVI---AFTRNMIGEIENRS 179
             +A +K VRRVPEVVE Y SL R+D+    R +T     AA  I   +  R+MIGEIENRS
Sbjct:   348 IASAK-VRRVPEVVEFYHSLMRRDSTNSRRDSTGGGNAAAEAILANSNARDMIGEIENRS 406

Query:   180 TYLSAIKTDVKKQKEFINFLIKEVESAVFDQISEVEAFVKWLDGELSSLVDERAVLKHFP 239
              YL AIKTDV+ Q +FI FLIKEV +A F  I +V  FVKWLD ELS LVDERAVLKHF 
Sbjct:   407 VYLLAIKTDVETQGDFIRFLIKEVGNAAFSDIEDVVPFVKWLDDELSYLVDERAVLKHF- 465

Query:   240 QWPERKADTLREAACNYRDLKNLEQEVSSFEDNQKESLPQATRKMQALQDR--RACWS-- 295
             +WPE+KAD LREAA  Y DLK L  E S F ++ ++S   A +KMQAL ++     +S  
Sbjct:   466 EWPEQKADALREAAFCYFDLKKLISEASRFREDPRQSSSSALKKMQALFEKLEHGVYSLS 525

Query:   296 ---KGTGKKYRDFQIPCDWMMDSGLIGQMKVSSLRLAKEYMKRFAGGFDA 342
                +    K++ FQIP DWM+++G+  Q+K++S++LA +YMKR +   +A
Sbjct:   526 RMRESAATKFKSFQIPVDWMLETGITSQIKLASVKLAMKYMKRVSAELEA 575

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2102385 CHUP1 "CHLOROPLAST UNUSUAL POSITIONING 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 465 (168.7 bits), Expect = 6.8e-51, Sum P(3) = 6.8e-51
 Identities = 101/224 (45%), Positives = 146/224 (65%)

Query:   129 GSKTVRRVPEVVELYRSLTRKDAHMENRSNTTAAPV---IAFTRNMIGEIENRSTYLSAI 185
             G   V R PE+VE Y+SL ++++  E   +  ++      A   NMIGEIENRST+L A+
Sbjct:   714 GGNKVHRAPELVEFYQSLMKRESKKEGAPSLISSGTGNSSAARNNMIGEIENRSTFLLAV 773

Query:   186 KTDVKKQKEFINFLIKEVESAVFDQISEVEAFVKWLDGELSSLVDERAVLKHFPQWPERK 245
             K DV+ Q +F+  L  EV ++ F  I ++ AFV WLD ELS LVDERAVLKHF  WPE K
Sbjct:   774 KADVETQGDFVQSLATEVRASSFTDIEDLLAFVSWLDEELSFLVDERAVLKHF-DWPEGK 832

Query:   246 ADTLREAACNYRDLKNLEQEVSSFEDNQKESLPQATRKMQALQDR--RACWSKGTGK--- 300
             AD LREAA  Y+DL  LE++V+SF D+   S   A +KM  L ++  ++ ++    +   
Sbjct:   833 ADALREAAFEYQDLMKLEKQVTSFVDDPNLSCEPALKKMYKLLEKVEQSVYALLRTRDMA 892

Query:   301 --KYRDFQIPCDWMMDSGLIGQMKVSSLRLAKEYMKRFAGGFDA 342
               +Y++F IP DW+ D+G++G++K+SS++LAK+YMKR A   D+
Sbjct:   893 ISRYKEFGIPVDWLSDTGVVGKIKLSSVQLAKKYMKRVAYELDS 936

GO:0005634 "nucleus" evidence=ISM

GO:0009507 "chloroplast" evidence=IDA

GO:0009707 "chloroplast outer membrane" evidence=IDA

GO:0009902 "chloroplast relocation" evidence=RCA;IMP

GO:0006364 "rRNA processing" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2007755 AT1G48280 "AT1G48280" [Arabidopsis thaliana (taxid:3702)]

 Score = 437 (158.9 bits), Expect = 1.9e-50, Sum P(3) = 1.9e-50
 Identities = 95/220 (43%), Positives = 144/220 (65%)

Query:   127 LAGSKTVRRVPEVVELYRSLTRKD--AHMENRSNTTAAPVIAFTRNMIGEIENRSTYLSA 184
             LA +   ++ P V +L++ L ++D   ++    N   + V +   +++GEI+NRS +L A
Sbjct:   273 LAKAARAQKSPPVSQLFQLLNKQDNSRNLSQSVNGNKSQVNSAHNSIVGEIQNRSAHLIA 332

Query:   185 IKTDVKKQKEFINFLIKEVESAVFDQISEVEAFVKWLDGELSSLVDERAVLKHFPQWPER 244
             IK D++ + EFIN LI++V +  F  + +V  FV WLD EL++L DERAVLKHF +WPE+
Sbjct:   333 IKADIETKGEFINDLIQKVLTTCFSDMEDVMKFVDWLDKELATLADERAVLKHF-KWPEK 391

Query:   245 KADTLREAACNYRDLKNLEQEVSSFEDNQKESLPQATRKMQALQD------RRACWSKGT 298
             KADTL+EAA  YR+LK LE+E+SS+ D+       A +KM  L D      RR    +G+
Sbjct:   392 KADTLQEAAVEYRELKKLEKELSSYSDDPNIHYGVALKKMANLLDKSEQRIRRLVRLRGS 451

Query:   299 G-KKYRDFQIPCDWMMDSGLIGQMKVSSLRLAKEYMKRFA 337
               + Y+DF+IP +WM+DSG+I ++K +S++LAK YM R A
Sbjct:   452 SMRSYQDFKIPVEWMLDSGMICKIKRASIKLAKTYMNRVA 491

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00024064001 SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (435 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	360
KOG1924	1102	consensus RhoA GTPase effector DIA/Diaphanous [Sig	98.13
KOG1924	1102	consensus RhoA GTPase effector DIA/Diaphanous [Sig	97.82
PF05308	253	Mito_fiss_reg: Mitochondrial fission regulator; In	97.34
KOG1923	830	consensus Rac1 GTPase effector FRL [Signal transdu	96.03
PF05308	253	Mito_fiss_reg: Mitochondrial fission regulator; In	93.97
KOG1925	817	consensus Rac1 GTPase effector FHOS [Signal transd	93.14
PHA01732	94	proline-rich protein	93.06
KOG2675	480	consensus Adenylate cyclase-associated protein (CA	91.75
KOG1923	830	consensus Rac1 GTPase effector FRL [Signal transdu	90.96
KOG2675	480	consensus Adenylate cyclase-associated protein (CA	90.19
PF01213	312	CAP_N: Adenylate cyclase associated (CAP) N termin	89.54
KOG2391	365	consensus Vacuolar sorting protein/ubiquitin recep	89.21
PRK13729	475	conjugal transfer pilus assembly protein TraB; Pro	89.06
COG5185	622	HEC1 Protein involved in chromosome segregation, i	88.26
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	86.62
PF06637	442	PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 Th	84.87
PRK10884	206	SH3 domain-containing protein; Provisional	84.67
COG5178	2365	PRP8 U5 snRNP spliceosome subunit [RNA processing	83.26
KOG3671	569	consensus Actin regulatory protein (Wiskott-Aldric	82.06
PF01213	312	CAP_N: Adenylate cyclase associated (CAP) N termin	81.19
PRK10803	263	tol-pal system protein YbgF; Provisional	80.25

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]

Probab=98.13  E-value=9.3e-06  Score=87.93  Aligned_cols=16  Identities=6%  Similarity=0.057  Sum_probs=7.2

Q ss_pred             HHHhhCCCCCCCCCCc
Q 047848           57 WKKLQNPNTDTSPQKQ   72 (360)
Q Consensus        57 ~Kkiq~~~~~~~~~~~   72 (360)
                      ..||+.+-+++...+.
T Consensus       501 e~Ki~~l~ae~~al~s  516 (1102)
T KOG1924|consen  501 EEKIKLLEAEKQALSS  516 (1102)
T ss_pred             hhhcccCchhhhhccC
Confidence            3445555444444333

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]

Probab=97.82  E-value=8.2e-05  Score=80.87  Aligned_cols=43  Identities=14%  Similarity=0.153  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 047848            8 SRIDSFQKERD---ARIALLEKENFELRQEVLRLKAQISSLKAHDN   50 (360)
Q Consensus         8 ~eI~~LKkeLd---s~n~eLe~EnkkLeQel~~LksQI~sL~~q~~   50 (360)
                      .+-.++.++++   ..-++.+.|.+++++.|..+++.+++|.++..
T Consensus       474 qkA~e~~kk~~ke~ta~qe~qael~k~e~Ki~~l~ae~~al~s~~~  519 (1102)
T KOG1924|consen  474 QKAAELEKKFDKELTARQEAQAELQKHEEKIKLLEAEKQALSSPSQ  519 (1102)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHhhhhcccCchhhhhccCccc
Confidence            34455666666   34677777777777777777777777776654

>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function

Probab=97.34  E-value=0.0016  Score=62.99  Aligned_cols=19  Identities=37%  Similarity=0.431  Sum_probs=11.5

Q ss_pred             HHHHHHHHHHHHHHHHHHh
Q 047848           25 EKENFELRQEVLRLKAQIS   43 (360)
Q Consensus        25 e~EnkkLeQel~~LksQI~   43 (360)
                      .+++.-|+.||..|++||.
T Consensus       121 lqKIsALEdELs~LRaQIA  139 (253)
T PF05308_consen  121 LQKISALEDELSRLRAQIA  139 (253)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3445556666666666666

>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]

Probab=96.03  E-value=0.014  Score=63.76  Aligned_cols=30  Identities=13%  Similarity=0.083  Sum_probs=15.0

Q ss_pred             HHHHHHHHHhhhhhh-------hhhhhhHHHHHhhCC
Q 047848           34 EVLRLKAQISSLKAH-------DNERKSMLWKKLQNP   63 (360)
Q Consensus        34 el~~LksQI~sL~~q-------~~erqs~l~Kkiq~~   63 (360)
                      ....+..+++.+.-.       .-.+++.+..+|..+
T Consensus       211 ~~~~~~dels~m~k~~~~~e~~lk~~~~~l~~ki~em  247 (830)
T KOG1923|consen  211 QRKALLDELSCMQKLSIEKERSLKAIARLLETKIGEM  247 (830)
T ss_pred             HHHHhcchhHHHHHHHHHHHHHHHHHHHhccCCcccc
Confidence            455566666655533       223344455555554

>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function

Probab=93.97  E-value=0.14  Score=49.77  Aligned_cols=11  Identities=0%  Similarity=0.184  Sum_probs=6.9

Q ss_pred             hhhhhHHHHHh
Q 047848          166 AFTRNMIGEIE  176 (360)
Q Consensus       166 ~~~~~iLgEIe  176 (360)
                      .+|-+||+.|.
T Consensus       238 PnMldVLKDmn  248 (253)
T PF05308_consen  238 PNMLDVLKDMN  248 (253)
T ss_pred             ccHHHHHHhhh
Confidence            45566777664

>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]

Probab=93.14  E-value=0.076  Score=56.45  Aligned_cols=39  Identities=15%  Similarity=0.112  Sum_probs=24.9

Q ss_pred             ccCCCCCCCCCCCCcccccc-cccccCCCCCCCCCCCCCC
Q 047848           82 QNLDGETFRPRPGFQELEAG-KERSMKIQTPVAFPAPPPP  120 (360)
Q Consensus        82 ~~~~~~~p~p~p~~~~~~~~-~~~~~~~~~~~~~pppppp  120 (360)
                      ..+..|.|||+|+..|+... ..|+++|||.++-||||||
T Consensus       225 ~~~~~P~~P~~P~~~P~~~~L~~GvPPPPP~G~~PPPPP~  264 (817)
T KOG1925|consen  225 PEPKEPLIPASPKELPTRDFLLSGVPPPPPKGPFPPPPPL  264 (817)
T ss_pred             CCCCCCCCCCChhccCCchhhhcCCCCCCCCCCCCCCCCC
Confidence            34666777777766665443 6688777776666555554

>PHA01732 proline-rich protein

Probab=93.06  E-value=0.29  Score=41.08  Aligned_cols=7  Identities=29%  Similarity=0.667  Sum_probs=3.1

Q ss_pred             chHHHHH
Q 047848          135 RVPEVVE  141 (360)
Q Consensus       135 RspeVVe  141 (360)
                      -+|.|-+
T Consensus        43 ~apki~~   49 (94)
T PHA01732         43 EAPKIRE   49 (94)
T ss_pred             chhHHHH
Confidence            3444443

>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]

Probab=91.75  E-value=0.1  Score=54.28  Aligned_cols=15  Identities=27%  Similarity=0.472  Sum_probs=9.1

Q ss_pred             hhhhhhHHHHHhhCC
Q 047848           49 DNERKSMLWKKLQNP   63 (360)
Q Consensus        49 ~~erqs~l~Kkiq~~   63 (360)
                      ...|+|++|-.|--+
T Consensus       126 E~nRkS~~FNhLsav  140 (480)
T KOG2675|consen  126 EKNRKSPFFNHLSAV  140 (480)
T ss_pred             hcccCchHHHHHHHH
Confidence            555667777666443

>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]

Probab=90.96  E-value=1.1  Score=49.64  Aligned_cols=8  Identities=25%  Similarity=0.206  Sum_probs=3.1

Q ss_pred             hhhhhhhh
Q 047848           45 LKAHDNER   52 (360)
Q Consensus        45 L~~q~~er   52 (360)
                      |+..++|-
T Consensus       240 l~~ki~em  247 (830)
T KOG1923|consen  240 LETKIGEM  247 (830)
T ss_pred             ccCCcccc
Confidence            33334433

>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]

Probab=90.19  E-value=0.36  Score=50.48  Aligned_cols=13  Identities=15%  Similarity=0.153  Sum_probs=7.3

Q ss_pred             HHHHHHHHHHhhh
Q 047848          137 PEVVELYRSLTRK  149 (360)
Q Consensus       137 peVVelY~sLkkk  149 (360)
                      ..+..+|..|...
T Consensus       262 ~~~~AlFaqlNqG  274 (480)
T KOG2675|consen  262 GGRGALFAQLNQG  274 (480)
T ss_pred             ccHHHHHHHHhcc
Confidence            4455566665543

>PF01213 CAP_N: Adenylate cyclase associated (CAP) N terminal; InterPro: IPR013992 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals

Probab=89.54  E-value=0.1  Score=51.99  Aligned_cols=14  Identities=14%  Similarity=0.259  Sum_probs=0.0

Q ss_pred             hHHHHHHHHHHhhh
Q 047848          136 VPEVVELYRSLTRK  149 (360)
Q Consensus       136 speVVelY~sLkkk  149 (360)
                      .+.+..+|-.|.+.
T Consensus       259 ~~~~~AlFaeLN~G  272 (312)
T PF01213_consen  259 SGGMSALFAELNQG  272 (312)
T ss_dssp             --------------
T ss_pred             cccHHHHHHHHhcc
Confidence            46667777777553

CAPs are multifunctional proteins that contain several structural domains. CAP is involved in species-specific signalling pathways [, , , ]. In Drosophila, CAP functions in Hedgehog-mediated eye development and in establishing oocyte polarity. In Dictyostelium (slim mold), CAP is involved in microfilament reorganisation near the plasma membrane in a PIP2-regulated manner and is required to perpetuate the cAMP relay signal to organise fruitbody formation. In plants, CAP is involved in plant signalling pathways required for co-ordinated organ expansion. In yeast, CAP is involved in adenylate cyclase activation, as well as in vesicle trafficking and endocytosis. In both yeast and mammals, CAPs appear to be involved in recycling G-actin monomers from ADF/cofilins for subsequent rounds of filament assembly [, ]. In mammals, there are two different CAPs (CAP1 and CAP2) that share 64% amino acid identity. All CAPs appear to contain a C-terminal actin-binding domain that regulates actin remodelling in response to cellular signals and is required for normal cellular morphology, cell division, growth and locomotion in eukaryotes. CAP directly regulates actin filament dynamics and has been implicated in a number of complex developmental and morphological processes, including mRNA localisation and the establishment of cell polarity. Actin exists both as globular (G) (monomeric) actin subunits and assembled into filamentous (F) actin. In cells, actin cycles between these two forms. Proteins that bind F-actin often regulate F-actin assembly and its interaction with other proteins, while proteins that interact with G-actin often control the availability of unpolymerised actin. CAPs bind G-actin. In addition to actin-binding, CAPs can have additional roles, and may act as bifunctional proteins. In Saccharomyces cerevisiae (Baker's yeast), CAP is a component of the adenylyl cyclase complex (Cyr1p) that serves as an effector of Ras during normal cell signalling. S. cerevisiae CAP functions to expose adenylate cyclase binding sites to Ras, thereby enabling adenylate cyclase to be activated by Ras regulatory signals. In Schizosaccharomyces pombe (Fission yeast), CAP is also required for adenylate cyclase activity, but not through the Ras pathway. In both organisms, the N-terminal domain is responsible for adenylate cyclase activation, but the S cerevisiae and S. pombe N-termini cannot complement one another. Yeast CAPs are unique among the CAP family of proteins, because they are the only ones to directly interact with and activate adenylate cyclase []. S. cerevisiae CAP has four major domains. In addition to the N-terminal adenylate cyclase-interacting domain, and the C-terminal actin-binding domain, it possesses two other domains: a proline-rich domain that interacts with Src homology 3 (SH3) domains of specific proteins, and a domain that is responsible for CAP oligomerisation to form multimeric complexes (although oligomerisation appears to involve the N- and C-terminal domains as well). The proline-rich domain interacts with profilin, a protein that catalyses nucleotide exchange on G-actin monomers and promotes addition to barbed ends of filamentous F-actin []. Since CAP can bind profilin via a proline-rich domain, and G-actin via a C-terminal domain, it has been suggested that a ternary G-actin/CAP/profilin complex could be formed. This entry represents the N-terminal domain of CAP proteins. This domain has an all-alpha structure consisting of six helices in a bundle with a left-handed twist and an up-and-down topology [].; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1TJF_B 1S0P_A.

>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=89.21  E-value=9.2  Score=39.20  Aligned_cols=26  Identities=27%  Similarity=0.340  Sum_probs=12.7

Q ss_pred             HHHHHHHHhhHHHhhhhhhhHHhhhh
Q 047848          212 SEVEAFVKWLDGELSSLVDERAVLKH  237 (360)
Q Consensus       212 ~~v~~Fv~wld~eLs~L~DEraVLk~  237 (360)
                      .++++-+.-||+++.+|---..||+.
T Consensus       249 ~kL~~~~etLEqq~~~L~~niDIL~~  274 (365)
T KOG2391|consen  249 QKLVAMKETLEQQLQSLQKNIDILKS  274 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            33444444455555555555555543

>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional

Probab=89.06  E-value=2.3  Score=44.96  Aligned_cols=41  Identities=15%  Similarity=0.144  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhhhhh
Q 047848            9 RIDSFQKERDARIALLE---KENFELRQEVLRLKAQISSLKAHD   49 (360)
Q Consensus         9 eI~~LKkeLds~n~eLe---~EnkkLeQel~~LksQI~sL~~q~   49 (360)
                      ...+|+++|+.+.++++   .+++.+++.|+++++++..|+.|.
T Consensus        77 kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql  120 (475)
T PRK13729         77 TAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV  120 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            44566666665555555   666677777777777777776664

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=88.26  E-value=6.7  Score=41.91  Aligned_cols=96  Identities=17%  Similarity=0.175  Sum_probs=53.7

Q ss_pred             HHhhhhhhh-HHhhhhCCCCCcchhhHHHHhhhhhhhhhhhHHHhhhcccccCCcHHHHHHHHHHHHHHHhhcchhhhhh
Q 047848          223 GELSSLVDE-RAVLKHFPQWPERKADTLREAACNYRDLKNLEQEVSSFEDNQKESLPQATRKMQALQDRRACWSKGTGKK  301 (360)
Q Consensus       223 ~eLs~L~DE-raVLk~F~~wPe~K~dalReAa~~y~~L~~l~~e~s~~~d~p~~p~~~~L~Km~~l~dk~Er~rd~~~~r  301 (360)
                      ++|..|.+| ..|++.|   -..|-.+=|+-...--..++||.|+...+......+-++=.++++.==+++++....  .
T Consensus       501 ~~l~~~e~~L~~a~s~~---~~~ke~~e~e~~a~~~E~eklE~el~~lnL~s~ts~l~~eq~vqs~~i~ld~~~~~~--n  575 (622)
T COG5185         501 QILEKLELELSEANSKF---ELSKEENERELVAQRIEIEKLEKELNDLNLLSKTSILDAEQLVQSTEIKLDELKVDL--N  575 (622)
T ss_pred             HHHHHHHHHHHHHHHHH---HHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhccchHhhHHHHHHHHHhhHHHHHHHH--H
Confidence            333444443 2355555   367777888888888889999999998877666666555444444332333333221  1


Q ss_pred             hhccCCCccccccchhhHHHHH
Q 047848          302 YRDFQIPCDWMMDSGLIGQMKV  323 (360)
Q Consensus       302 yk~~~Ip~~wmld~gii~kiK~  323 (360)
                      |+.++|+-.-.---|+++++|.
T Consensus       576 ~~r~~i~k~V~~v~~~~~~fk~  597 (622)
T COG5185         576 RKRYKIHKQVIHVIDITSKFKI  597 (622)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhh
Confidence            2223333221112367777775

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=86.62  E-value=2.5  Score=41.61  Aligned_cols=54  Identities=28%  Similarity=0.406  Sum_probs=43.1

Q ss_pred             chhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHH
Q 047848            5 DDDSRIDSFQKERD---ARIALLEKENFELRQEVLRLKAQISSLKAHDNERKSMLWK   58 (360)
Q Consensus         5 d~e~eI~~LKkeLd---s~n~eLe~EnkkLeQel~~LksQI~sL~~q~~erqs~l~K   58 (360)
                      ++..+|..|-.+.+   ..+++++.++.++.++++.|+.+|..++..|.+|+..+-+
T Consensus        49 ~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~  105 (265)
T COG3883          49 NIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKK  105 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566666666655   5578888889999999999999999999999999866655

>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals

Probab=84.87  E-value=5.1  Score=41.62  Aligned_cols=7  Identities=29%  Similarity=0.377  Sum_probs=2.8

Q ss_pred             HHHHHHH
Q 047848          139 VVELYRS  145 (360)
Q Consensus       139 VVelY~s  145 (360)
                      +-||-+.
T Consensus       418 leefkrr  424 (442)
T PF06637_consen  418 LEEFKRR  424 (442)
T ss_pred             HHHHHHH
Confidence            3444333

PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.

>PRK10884 SH3 domain-containing protein; Provisional

Probab=84.67  E-value=2.8  Score=39.59  Aligned_cols=28  Identities=14%  Similarity=0.283  Sum_probs=16.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 047848           23 LLEKENFELRQEVLRLKAQISSLKAHDN   50 (360)
Q Consensus        23 eLe~EnkkLeQel~~LksQI~sL~~q~~   50 (360)
                      +|+++|++|.+++..+++++..|+.++.
T Consensus       136 ~L~~~n~~L~~~l~~~~~~~~~l~~~~~  163 (206)
T PRK10884        136 GLKEENQKLKNQLIVAQKKVDAANLQLD  163 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3555666666666666666665555533

>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]

Probab=83.26  E-value=0.82  Score=52.96  Aligned_cols=25  Identities=28%  Similarity=0.340  Sum_probs=14.9

Q ss_pred             HhhhhCCCCCcchhhHHHHhhhhhhh
Q 047848          233 AVLKHFPQWPERKADTLREAACNYRD  258 (360)
Q Consensus       233 aVLk~F~~wPe~K~dalReAa~~y~~  258 (360)
                      +||+-+++-|.. ++-.++.-++|.+
T Consensus       121 avlkLLeNmP~p-We~~~evkvlyh~  145 (2365)
T COG5178         121 AVLKLLENMPSP-WEDVSEVKVLYHC  145 (2365)
T ss_pred             HHHHHHhcCCCh-HhhhheeeEEeec
Confidence            566666666543 4445666666665

>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]

Probab=82.06  E-value=1.3  Score=47.17  Aligned_cols=7  Identities=14%  Similarity=0.031  Sum_probs=2.6

Q ss_pred             CCCCCCC
Q 047848           85 DGETFRP   91 (360)
Q Consensus        85 ~~~~p~p   91 (360)
                      +.|+|||
T Consensus       374 r~PPPpp  380 (569)
T KOG3671|consen  374 RPPPPPP  380 (569)
T ss_pred             CCCcCCC
Confidence            3333333

>PF01213 CAP_N: Adenylate cyclase associated (CAP) N terminal; InterPro: IPR013992 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals

Probab=81.19  E-value=0.48  Score=47.35  Aligned_cols=6  Identities=17%  Similarity=0.290  Sum_probs=0.0

Q ss_pred             HHHHHH
Q 047848          186 KTDVKK  191 (360)
Q Consensus       186 k~Dve~  191 (360)
                      -.|-+|
T Consensus       283 ~~~~~T  288 (312)
T PF01213_consen  283 TKDMMT  288 (312)
T ss_dssp             ------
T ss_pred             Ccchhc
Confidence            333333

CAPs are multifunctional proteins that contain several structural domains. CAP is involved in species-specific signalling pathways [, , , ]. In Drosophila, CAP functions in Hedgehog-mediated eye development and in establishing oocyte polarity. In Dictyostelium (slim mold), CAP is involved in microfilament reorganisation near the plasma membrane in a PIP2-regulated manner and is required to perpetuate the cAMP relay signal to organise fruitbody formation. In plants, CAP is involved in plant signalling pathways required for co-ordinated organ expansion. In yeast, CAP is involved in adenylate cyclase activation, as well as in vesicle trafficking and endocytosis. In both yeast and mammals, CAPs appear to be involved in recycling G-actin monomers from ADF/cofilins for subsequent rounds of filament assembly [, ]. In mammals, there are two different CAPs (CAP1 and CAP2) that share 64% amino acid identity. All CAPs appear to contain a C-terminal actin-binding domain that regulates actin remodelling in response to cellular signals and is required for normal cellular morphology, cell division, growth and locomotion in eukaryotes. CAP directly regulates actin filament dynamics and has been implicated in a number of complex developmental and morphological processes, including mRNA localisation and the establishment of cell polarity. Actin exists both as globular (G) (monomeric) actin subunits and assembled into filamentous (F) actin. In cells, actin cycles between these two forms. Proteins that bind F-actin often regulate F-actin assembly and its interaction with other proteins, while proteins that interact with G-actin often control the availability of unpolymerised actin. CAPs bind G-actin. In addition to actin-binding, CAPs can have additional roles, and may act as bifunctional proteins. In Saccharomyces cerevisiae (Baker's yeast), CAP is a component of the adenylyl cyclase complex (Cyr1p) that serves as an effector of Ras during normal cell signalling. S. cerevisiae CAP functions to expose adenylate cyclase binding sites to Ras, thereby enabling adenylate cyclase to be activated by Ras regulatory signals. In Schizosaccharomyces pombe (Fission yeast), CAP is also required for adenylate cyclase activity, but not through the Ras pathway. In both organisms, the N-terminal domain is responsible for adenylate cyclase activation, but the S cerevisiae and S. pombe N-termini cannot complement one another. Yeast CAPs are unique among the CAP family of proteins, because they are the only ones to directly interact with and activate adenylate cyclase []. S. cerevisiae CAP has four major domains. In addition to the N-terminal adenylate cyclase-interacting domain, and the C-terminal actin-binding domain, it possesses two other domains: a proline-rich domain that interacts with Src homology 3 (SH3) domains of specific proteins, and a domain that is responsible for CAP oligomerisation to form multimeric complexes (although oligomerisation appears to involve the N- and C-terminal domains as well). The proline-rich domain interacts with profilin, a protein that catalyses nucleotide exchange on G-actin monomers and promotes addition to barbed ends of filamentous F-actin []. Since CAP can bind profilin via a proline-rich domain, and G-actin via a C-terminal domain, it has been suggested that a ternary G-actin/CAP/profilin complex could be formed. This entry represents the N-terminal domain of CAP proteins. This domain has an all-alpha structure consisting of six helices in a bundle with a left-handed twist and an up-and-down topology [].; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1TJF_B 1S0P_A.

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=80.25  E-value=6.4  Score=38.11  Aligned_cols=60  Identities=13%  Similarity=0.283  Sum_probs=50.3

Q ss_pred             CchhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhh---hhhhhhhhHHHHHhhCC
Q 047848            4 EDDDSRIDSFQKERDAR---IALLEKENFELRQEVLRLKAQISSLK---AHDNERKSMLWKKLQNP   63 (360)
Q Consensus         4 gd~e~eI~~LKkeLds~---n~eLe~EnkkLeQel~~LksQI~sL~---~q~~erqs~l~Kkiq~~   63 (360)
                      |..+..|..|+..++.+   .-+|+.++..|++|+.+|..+|..+.   .+..+||.-+.-+|.+.
T Consensus        36 ~~~~~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r  101 (263)
T PRK10803         36 GSVEDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSL  101 (263)
T ss_pred             CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56688888999888833   56899999999999999999999887   44888998888888775

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	360
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.4 bits (122), Expect = 3e-07
 Identities = 61/434 (14%), Positives = 116/434 (26%), Gaps = 144/434 (33%)

Query: 11  DSFQKERDAR------IALLEKENFE----LRQEVLRLKAQISSLKAHDNE--------- 51
           D+F    D +       ++L KE  +     +  V        +L +   E         
Sbjct: 27  DAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEV 86

Query: 52  -RK--SMLWKKLQNPNTDTSPQKQTDFVKTQEFQNLDGETF------RPRP------GFQ 96
            R     L   ++      S   +  +++ ++    D + F      R +P         
Sbjct: 87  LRINYKFLMSPIKTEQRQPSMMTRM-YIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL 145

Query: 97  ELE------------AGKE-------RSMKIQTPVAFPAPPPPPLPSKFLAGSKTVRRVP 137
           EL             +GK         S K+Q  + F           F    K      
Sbjct: 146 ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI---------FWLNLKNCNSPE 196

Query: 138 EVVELYRSLTRK-DAHMENRSNTTAAPVIAFTRNMIGEIENRSTYLSAIKT--------- 187
            V+E+ + L  + D +  +RS+ ++       +  I  I+     L   K          
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSNI-----KLRIHSIQAELRRLLKSKPYENCLLVLL 251

Query: 188 DVKKQKEFINF------LIKEVESAVFDQISEVEAFVKWLDGELSSLVDERAVLKHFPQW 241
           +V+  K +  F      L+      V D +S        LD    +L     V     ++
Sbjct: 252 NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL-TPDEVKSLLLKY 310

Query: 242 PERKADTLREAAC----------------------NYR--DLKNLEQEVSSFEDNQKESL 277
            + +   L                           N++  +   L   + S  +  +   
Sbjct: 311 LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE--- 367

Query: 278 PQATRKMQALQDRRACWSKGTGKKYRDF-------QIPCD-----WM-MDSGLIGQM--K 322
           P   RKM                 +           IP       W  +    +  +  K
Sbjct: 368 PAEYRKM-----------------FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK 410

Query: 323 VSSLRLAKEYMKRF 336
           +    L ++  K  
Sbjct: 411 LHKYSLVEKQPKES 424

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 5e-06
 Identities = 50/319 (15%), Positives = 95/319 (29%), Gaps = 77/319 (24%)

Query: 6   DDSRIDSFQKERDARIALLEKENFELRQEVLRLKAQISSLKAHD--NERK-------SML 56
                D         I+L          EV  L  +    +  D   E         S++
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII 333

Query: 57  WKKLQN-PNT-DTSPQKQTD-FVKTQE--FQNLDGETFRPRPGFQELEAGKERSMKIQTP 111
            + +++   T D       D      E     L+   +R    F  L             
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM--FDRL------------- 378

Query: 112 VAFPAPPPPPLPSKFLAG--SKTVRRVPEVV--ELY-RSLTRKDA----------HMENR 156
             F  PP   +P+  L+      ++    VV  +L+  SL  K            ++E +
Sbjct: 379 SVF--PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436

Query: 157 SNTTAAPVIAFTRNMIGEIENRSTYLSAIKTDVKKQKEFINFL---IKEVESAVFDQISE 213
                    A  R+++       T+ S         + F + +   +K +E         
Sbjct: 437 VKLENEY--ALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE-----HPER 489

Query: 214 VEAFVKWLDGELSSLVDERAVLKHFPQWPERKADTLREA--ACNYR-DLKNLEQEVSSFE 270
           +  F           +D R        + E+K   +R    A N    + N  Q++  ++
Sbjct: 490 MTLFRMV-------FLDFR--------FLEQK---IRHDSTAWNASGSILNTLQQLKFYK 531

Query: 271 DNQKESLPQATRKMQALQD 289
               ++ P+  R + A+ D
Sbjct: 532 PYICDNDPKYERLVNAILD 550

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	360
1g6u_A	48	Domain swapped dimer; designed three helix bundle,	87.36
2xdj_A	83	Uncharacterized protein YBGF; unknown function; 1.	85.53
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	84.95
3ra3_A	28	P1C; coiled coil domain, fiber, KIH interactions,	80.74

>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1

Probab=87.36  E-value=0.86  Score=32.41  Aligned_cols=41  Identities=29%  Similarity=0.420  Sum_probs=31.6

Q ss_pred             hHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 047848            7 DSRIDSFQKERD--ARIALLEKENFELRQEVLRLKAQISSLKA   47 (360)
Q Consensus         7 e~eI~~LKkeLd--s~n~eLe~EnkkLeQel~~LksQI~sL~~   47 (360)
                      .+++..||++=.  .+..-|+.+.+-|+..++.|+++++.|++
T Consensus         6 kselqalkkegfspeelaaleselqalekklaalksklqalkg   48 (48)
T 1g6u_A            6 KSELQALKKEGFSPEELAALESELQALEKKLAALKSKLQALKG   48 (48)
T ss_dssp             HHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            455666665544  66788999999999999999999998763

>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A

Probab=85.53  E-value=4.2  Score=32.32  Aligned_cols=60  Identities=12%  Similarity=0.227  Sum_probs=48.9

Q ss_pred             CchhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhh---hhhhhhhhHHHHHhhCC
Q 047848            4 EDDDSRIDSFQKERD---ARIALLEKENFELRQEVLRLKAQISSLK---AHDNERKSMLWKKLQNP   63 (360)
Q Consensus         4 gd~e~eI~~LKkeLd---s~n~eLe~EnkkLeQel~~LksQI~sL~---~q~~erqs~l~Kkiq~~   63 (360)
                      |+.+..+..|+..++   ...-+|..++..|++++.+|..+|..+.   .+..++|.-+..+|.+.
T Consensus         2 ~s~e~rv~~LEr~~~~~~q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD~R   67 (83)
T 2xdj_A            2 GSVEDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQIDSL   67 (83)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             ccHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567788888887776   3467899999999999999999999887   44788888899888765

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B

Probab=84.95  E-value=1.4  Score=34.18  Aligned_cols=43  Identities=9%  Similarity=0.093  Sum_probs=30.6

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 047848            5 DDDSRIDSFQKERDARIALLEKENFELRQEVLRLKAQISSLKA   47 (360)
Q Consensus         5 d~e~eI~~LKkeLds~n~eLe~EnkkLeQel~~LksQI~sL~~   47 (360)
                      +++..-..+-+.|...++.|+.++..|.++...|+.++.+|++
T Consensus        40 ~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L~~   82 (83)
T 1nkp_B           40 QILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRALGG   82 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            4444555556666677777888888888888888888877764

>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}

Probab=80.74  E-value=1.1  Score=28.74  Aligned_cols=25  Identities=48%  Similarity=0.511  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhh
Q 047848           22 ALLEKENFELRQEVLRLKAQISSLK   46 (360)
Q Consensus        22 ~eLe~EnkkLeQel~~LksQI~sL~   46 (360)
                      +.|+=+|.-|+|.++.|+.+|.+|+
T Consensus         3 dalefendaleqkiaalkqkiaslk   27 (28)
T 3ra3_A            3 DALEFENDALEQKIAALKQKIASLK   27 (28)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHhccHHHHHHHHHHHHHHHHhc
Confidence            4577889999999999999999886

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00