Citrus Sinensis ID: 047888

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270----
MTLTDGELTVNANGNAFMELMTHSSSFLLPSTPTDSRPSLTYALVVLNQRLPRFAPLLWQHAKLRLCADGGANRVYDELPQLFPHEDPSDIRRRYKPDLIKGDMDSIRKEVMDFYASLGTKVVDESHDQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALGGRFDHEAGNINVLYRFSDIRIILLSDDCHIQLLPKTHRHDIYIQSSVEGPHCGLIPIGMPSGSTSTTGLQWDLDNTETRFGGLVSTSNIVKGEKVTVRSDSDLLWTISIKNQ
cccccccEEEEcccccccccEEEccccccccccccccccccEEEEEEcccccccHHHHHHHccEEEEEccHHHHHHHHHcccccccccHHccccccccEEEcccccccHHHHHHHHHcccEEEEccccccHHHHHHHHHHHHHHcccccccccEEEEEccccHHHHHHHHHHHHHHHccccEEEEEEcccEEEEEEcccEEEEEEcccccccEEEEEEcccccccEEEccEEcccccccEEEccEEEEccEEEccEEEEEEEccEEEEEEEccc
ccccccccccccccccHHHHcccccEEEcccHHHcccccccEEEEEccccccccHHHHHHHccEEEEEccHHHHHHHHHHHHccccccHHHHHHccccEEEcccccccHHHHHHHHHcccEEEEccccccccHHHHHHHHHHHHccHccccccEEEEEEcccccHHHHHHHHHHHHHcccccEEEEEcccEEEEEccccEEEEEcccccEEEEEEEEcccccEEEEEEEcEccccccEEEEcccEcEEEEcEcccEEEEEccccEEEEEEEccc
mtltdgeltVNANGNAFMELMThsssfllpstptdsrpsLTYALVVLNQrlprfaplLWQHAKLRLCadgganrvydelpqlfphedpsdirrrykpdlikgdMDSIRKEVMDFYASLGtkvvdeshdqdttdlHKCVAYIRdctpnleksnLRILVAGalggrfdheagninvLYRFSDIRIILlsddchiqllpkthrhdiyiqssvegphcglipigmpsgststtglqwdldntetrfgglvstsnivkgekvtvrsdsdlLWTISIKNQ
MTLTDGELTVNANGNAFMELMTHSSSFLLPSTPTDSRPSLTYALVVLNQRLPRFAPLLWQHAKLRLCADGGANRVYDElpqlfphedpsdirrrykpdlikgDMDSIRKEVMDFYASLGTKVVDESHDQDTTDLHKCVAYIRDCtpnleksnLRILVAGALGGRFDHEAGNINVLYRFSDIRIILLSDDCHIQLLPKTHRHDIYIQSSVEGPHCGLIPIGMPSGSTSTTGLQWDLDNTETRFGglvstsnivkgekvtvrsdsdllwtisiknq
MTLTDGELTVNANGNAFMELMTHSSSFLLPSTPTDSRPSLTYALVVLNQRLPRFAPLLWQHAKLRLCADGGANRVYDELPQLFPHEDPSDIRRRYKPDLIKGDMDSIRKEVMDFYASLGTKVVDESHDQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALGGRFDHEAGNINVLYRFSDIRIILLSDDCHIQLLPKTHRHDIYIQSSVEGPHCGLIPIGMPSGSTSTTGLQWDLDNTETRFGGLVSTSNIVKGEKVTVRSDSDLLWTISIKNQ
***************************************LTYALVVLNQRLPRFAPLLWQHAKLRLCADGGANRVYDELPQLF**************DLIKGDMDSIRKEVMDFYASLGTKVVDESHDQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALGGRFDHEAGNINVLYRFSDIRIILLSDDCHIQLLPKTHRHDIYIQSSVEGPHCGLIPIGMPSGSTSTTGLQWDLDNTETRFGGLVSTSNIVKGEKVTVRSDSDLLWTIS****
*******LTVNANGNAFMELMTHSSSFLLPSTPTDSRPSLTYALVVLNQRLPRFAPLLWQHAKLRLCADGGANRVYDELPQLFPHEDPSDIRRRYKPDLIKGDMDSIRKEVMDFYASLGTKVVDESHDQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALGGRFDHEAGNINVLYRFSDIRIILLSDDCHIQLLPKTHRHDIYIQSSVEGPHCGLIPIGMPSGSTSTTGLQWDLDNTETRFGGLVSTSNIVKGEKVTVRSDSDLLWTISIKN*
MTLTDGELTVNANGNAFMELMTHSSSFLLPSTPTDSRPSLTYALVVLNQRLPRFAPLLWQHAKLRLCADGGANRVYDELPQLFPHEDPSDIRRRYKPDLIKGDMDSIRKEVMDFYASLGTKVVDESHDQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALGGRFDHEAGNINVLYRFSDIRIILLSDDCHIQLLPKTHRHDIYIQSSVEGPHCGLIPIGMPSGSTSTTGLQWDLDNTETRFGGLVSTSNIVKGEKVTVRSDSDLLWTISIKNQ
*******************LMTHSSSFLLPSTPTDSRPSLTYALVVLNQRLPRFAPLLWQHAKLRLCADGGANRVYDELPQLFPHEDPSDIRRRYKPDLIKGDMDSIRKEVMDFYASLGTKVVDESHDQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALGGRFDHEAGNINVLYRFSDIRIILLSDDCHIQLLPKTHRHDIYIQSSVEGPHCGLIPIGMPSGSTSTTGLQWDLDNTETRFGGLVSTSNIVKGEKVTVRSDSDLLWTISIKN*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MTLTDGELTVNANGNAFMELMTHSSSFLLPSTPTDSRPSLTYALVVLNQRLPRFAPLLWQHAKLRLCADGGANRVYDELPQLFPHEDPSDIRRRYKPDLIKGDMDSIRKEVMDFYASLGTKVVDESHDQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALGGRFDHEAGNINVLYRFSDIRIILLSDDCHIQLLPKTHRHDIYIQSSVEGPHCGLIPIGMPSGSTSTTGLQWDLDNTETRFGGLVSTSNIVKGEKVTVRSDSDLLWTISIKNQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query274 2.2.26 [Sep-21-2011]
Q9H3S4243 Thiamin pyrophosphokinase yes no 0.839 0.946 0.398 1e-41
Q9R0M5243 Thiamin pyrophosphokinase yes no 0.872 0.983 0.404 2e-40
Q5E9T4243 Thiamin pyrophosphokinase yes no 0.861 0.971 0.380 1e-39
P41888569 Thiamine pyrophosphokinas yes no 0.748 0.360 0.326 1e-25
P30636243 Thiamin pyrophosphokinase yes no 0.722 0.814 0.303 3e-19
P35202319 Thiamine pyrophosphokinas yes no 0.806 0.692 0.279 2e-17
O34664214 Thiamine pyrophosphokinas yes no 0.510 0.654 0.258 3e-05
>sp|Q9H3S4|TPK1_HUMAN Thiamin pyrophosphokinase 1 OS=Homo sapiens GN=TPK1 PE=1 SV=1 Back     alignment and function desciption
 Score =  170 bits (430), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 100/251 (39%), Positives = 145/251 (57%), Gaps = 21/251 (8%)

Query: 30  PSTPTDSRPSLTYALVVLNQRLPRFAPLLWQHAKLRLCADGGANRVYDELPQLFPHEDPS 89
           P  P  S  +L Y LV+LNQ L  +   LW  A LR CADGGANR+YD            
Sbjct: 7   PLEPLLSTGNLKYCLVILNQPLDNYFRHLWNKALLRACADGGANRLYD---------ITE 57

Query: 90  DIRRRYKPDLIKGDMDSIRKEVMDFYASLGTKVVDESHDQDTTDLHKCVAYIRDCTPNLE 149
             R  + P+ I GD DSIR EV ++YA+ G +++  + DQD TD  KC+  ++     +E
Sbjct: 58  GERESFLPEFINGDFDSIRPEVREYYATKGCELI-STPDQDHTDFTKCLKMLQK---KIE 113

Query: 150 KSNLR---ILVAGALGGRFDHEAGNINVLYRFSDIR---IILLSDDCHIQLLPKTHRHDI 203
           + +L+   I+  G L GRFD    ++N L++ + I    II++ ++  I LL +  +H +
Sbjct: 114 EKDLKVDVIVTLGGLAGRFDQIMASVNTLFQATHITPFPIIIIQEESLIYLL-QPGKHRL 172

Query: 204 YIQSSVEGPHCGLIPIGMPSGSTSTTGLQWDLDNTETRFGGLVSTSNIVKGEK-VTVRSD 262
           ++ + +EG  CGLIP+G P    +TTGL+W+L N    FG LVSTSN   G   VTV +D
Sbjct: 173 HVDTGMEGDWCGLIPVGQPCMQVTTTGLKWNLTNDVLAFGTLVSTSNTYDGSGVVTVETD 232

Query: 263 SDLLWTISIKN 273
             LLWT++IK+
Sbjct: 233 HPLLWTMAIKS 243
Catalyzes the phosphorylation of thiamine to thiamine pyrophosphate. Can also catalyze the phosphorylation of pyrithiamine to pyrithiamine pyrophosphate.
Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 7EC: .EC: 6EC: .EC: 2
>sp|Q9R0M5|TPK1_MOUSE Thiamin pyrophosphokinase 1 OS=Mus musculus GN=Tpk1 PE=1 SV=1 Back     alignment and function description
>sp|Q5E9T4|TPK1_BOVIN Thiamin pyrophosphokinase 1 OS=Bos taurus GN=TPK1 PE=2 SV=1 Back     alignment and function description
>sp|P41888|TNR3_SCHPO Thiamine pyrophosphokinase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tnr3 PE=4 SV=1 Back     alignment and function description
>sp|P30636|TPK1_CAEEL Thiamin pyrophosphokinase 1 OS=Caenorhabditis elegans GN=tpk-1 PE=1 SV=3 Back     alignment and function description
>sp|P35202|THI80_YEAST Thiamine pyrophosphokinase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=THI80 PE=1 SV=1 Back     alignment and function description
>sp|O34664|THIN_BACSU Thiamine pyrophosphokinase OS=Bacillus subtilis (strain 168) GN=thiN PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query274
255564116257 thiamin pyrophosphokinase, putative [Ric 0.930 0.992 0.780 1e-116
224128506254 predicted protein [Populus trichocarpa] 0.923 0.996 0.780 1e-115
224068326255 predicted protein [Populus trichocarpa] 0.923 0.992 0.788 1e-115
297848502266 hypothetical protein ARALYDRAFT_470256 [ 0.934 0.962 0.753 1e-112
356505566265 PREDICTED: thiamin pyrophosphokinase 1-l 0.930 0.962 0.770 1e-112
359806396259 uncharacterized protein LOC100795320 [Gl 0.930 0.984 0.758 1e-111
357511249260 Thiamin pyrophosphokinase [Medicago trun 0.930 0.980 0.763 1e-110
388507514260 unknown [Medicago truncatula] 0.930 0.980 0.759 1e-110
30678415267 thiamin pyrophosphokinase1 [Arabidopsis 0.927 0.951 0.746 1e-109
18379026264 thiamin pyrophosphokinase1 [Arabidopsis 0.927 0.962 0.746 1e-109
>gi|255564116|ref|XP_002523055.1| thiamin pyrophosphokinase, putative [Ricinus communis] gi|223537617|gb|EEF39240.1| thiamin pyrophosphokinase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 199/255 (78%), Positives = 227/255 (89%)

Query: 18  MELMTHSSSFLLPSTPTDSRPSLTYALVVLNQRLPRFAPLLWQHAKLRLCADGGANRVYD 77
           ME+MTHSS+FLLP+   D  PSL YAL+VLNQ LP+F PL+W+HAK+R+CADGGANRVYD
Sbjct: 1   MEVMTHSSAFLLPTISDDHHPSLNYALIVLNQHLPKFTPLIWKHAKIRVCADGGANRVYD 60

Query: 78  ELPQLFPHEDPSDIRRRYKPDLIKGDMDSIRKEVMDFYASLGTKVVDESHDQDTTDLHKC 137
           E+P LFPHE+  D+R+RYKPD+IKGD+DS+R+EV+DFYA LGTKVVDE HDQDTTDLHKC
Sbjct: 61  EMPLLFPHENALDVRQRYKPDVIKGDLDSVRREVLDFYARLGTKVVDECHDQDTTDLHKC 120

Query: 138 VAYIRDCTPNLEKSNLRILVAGALGGRFDHEAGNINVLYRFSDIRIILLSDDCHIQLLPK 197
           VAYI D TP+L+KS+L ILVAGALGGRFDHEAGN+NVLYRFS IR+ILLSDDC I LLP 
Sbjct: 121 VAYICDITPDLDKSSLCILVAGALGGRFDHEAGNLNVLYRFSTIRVILLSDDCLIYLLPS 180

Query: 198 THRHDIYIQSSVEGPHCGLIPIGMPSGSTSTTGLQWDLDNTETRFGGLVSTSNIVKGEKV 257
           TH H+IYIQSS+EGPHCGLIPIG PSGST+TTGLQWDL + E  FGGL+STSNIVKG KV
Sbjct: 181 THCHEIYIQSSIEGPHCGLIPIGKPSGSTTTTGLQWDLTDMEMSFGGLISTSNIVKGGKV 240

Query: 258 TVRSDSDLLWTISIK 272
           TVRS SDLLWTISIK
Sbjct: 241 TVRSSSDLLWTISIK 255

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224128506|ref|XP_002320349.1| predicted protein [Populus trichocarpa] gi|222861122|gb|EEE98664.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224068326|ref|XP_002302706.1| predicted protein [Populus trichocarpa] gi|222844432|gb|EEE81979.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297848502|ref|XP_002892132.1| hypothetical protein ARALYDRAFT_470256 [Arabidopsis lyrata subsp. lyrata] gi|297337974|gb|EFH68391.1| hypothetical protein ARALYDRAFT_470256 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356505566|ref|XP_003521561.1| PREDICTED: thiamin pyrophosphokinase 1-like [Glycine max] Back     alignment and taxonomy information
>gi|359806396|ref|NP_001241238.1| uncharacterized protein LOC100795320 [Glycine max] gi|255640042|gb|ACU20312.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|357511249|ref|XP_003625913.1| Thiamin pyrophosphokinase [Medicago truncatula] gi|357516337|ref|XP_003628457.1| Thiamin pyrophosphokinase [Medicago truncatula] gi|355500928|gb|AES82131.1| Thiamin pyrophosphokinase [Medicago truncatula] gi|355522479|gb|AET02933.1| Thiamin pyrophosphokinase [Medicago truncatula] gi|388502368|gb|AFK39250.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|388507514|gb|AFK41823.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|30678415|ref|NP_849580.1| thiamin pyrophosphokinase1 [Arabidopsis thaliana] gi|222424006|dbj|BAH19964.1| AT1G02880 [Arabidopsis thaliana] gi|332189369|gb|AEE27490.1| thiamin pyrophosphokinase1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|18379026|ref|NP_563669.1| thiamin pyrophosphokinase1 [Arabidopsis thaliana] gi|6056414|gb|AAF02878.1|AC009525_12 Unknown protein [Arabidopsis thaliana] gi|21553712|gb|AAM62805.1| thiamin pyrophosphokinase, putative [Arabidopsis thaliana] gi|332189368|gb|AEE27489.1| thiamin pyrophosphokinase1 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query274
TAIR|locus:2024660267 TPK1 "thiamin pyrophosphokinas 0.923 0.947 0.749 2.9e-103
TAIR|locus:2042436267 TPK2 "thiamin pyrophosphokinas 0.919 0.943 0.737 6.9e-102
UNIPROTKB|Q9H3S4243 TPK1 "Thiamin pyrophosphokinas 0.839 0.946 0.402 9.6e-41
UNIPROTKB|E2QWC1243 TPK1 "Uncharacterized protein" 0.861 0.971 0.392 2e-40
MGI|MGI:1352500243 Tpk1 "thiamine pyrophosphokina 0.857 0.967 0.409 3.3e-40
UNIPROTKB|F1SAD1243 TPK1 "Uncharacterized protein" 0.861 0.971 0.384 1.4e-39
UNIPROTKB|Q5E9T4243 TPK1 "Thiamin pyrophosphokinas 0.861 0.971 0.384 4.8e-39
UNIPROTKB|E1C3Q1243 TPK1 "Uncharacterized protein" 0.828 0.934 0.388 5.7e-36
DICTYBASE|DDB_G0267546337 DDB_G0267546 "Thiamin pyrophos 0.795 0.646 0.373 4e-35
UNIPROTKB|F5GZG6194 TPK1 "Thiamin pyrophosphokinas 0.408 0.577 0.4 5e-35
TAIR|locus:2024660 TPK1 "thiamin pyrophosphokinase1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1023 (365.2 bits), Expect = 2.9e-103, P = 2.9e-103
 Identities = 191/255 (74%), Positives = 216/255 (84%)

Query:    18 MELMTHSSSFLLPSTPTDSRPSLTYALVVLNQRLPRFAPLLWQHAKLRLCADGGANRVYD 77
             M++M HSSSFLLP   T +     YALVVLNQ LPRF PLLW+HAKLRLCADGGANR+YD
Sbjct:     4 MDVMIHSSSFLLPCDETST--GTRYALVVLNQSLPRFTPLLWEHAKLRLCADGGANRIYD 61

Query:    78 ELPQLFPHEDPSDIRRRYKPDLIKGDMDSIRKEVMDFYASLGTKVVDESHDQDTTDLHKC 137
             ELP  FP+ED   IR RYKPD+IKGDMDSIR++V+DFY +LGTKV+DESHDQDTTDL KC
Sbjct:    62 ELPLFFPNEDALAIRNRYKPDVIKGDMDSIRRDVLDFYINLGTKVIDESHDQDTTDLDKC 121

Query:   138 VAYIRDCTPNLEKSNLRILVAGALGGRFDHEAGNINVLYRFSDIRIILLSDDCHIQLLPK 197
             + YIR  T N E S L+IL  GALGGRFDHEAGN+NVLYR+ D RI+LLSDDC IQLLPK
Sbjct:   122 ILYIRHSTLNQETSGLQILATGALGGRFDHEAGNLNVLYRYPDTRIVLLSDDCLIQLLPK 181

Query:   198 THRHDIYIQSSVEGPHCGLIPIGMPSGSTSTTGLQWDLDNTETRFGGLVSTSNIVKGEKV 257
             THRH+I+IQSS+EGPHCGLIPIG PS  T+T+GLQWDL NTE RFGGL+STSN+VK EK+
Sbjct:   182 THRHEIHIQSSLEGPHCGLIPIGTPSAKTTTSGLQWDLSNTEMRFGGLISTSNLVKEEKI 241

Query:   258 TVRSDSDLLWTISIK 272
             TV SDSDLLWTISIK
Sbjct:   242 TVESDSDLLWTISIK 256
GO:0004788 "thiamine diphosphokinase activity" evidence=IEA;ISS;IDA
GO:0005524 "ATP binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0006772 "thiamine metabolic process" evidence=IEA;IGI;ISS
GO:0009229 "thiamine diphosphate biosynthetic process" evidence=IEA
GO:0005829 "cytosol" evidence=IDA
TAIR|locus:2042436 TPK2 "thiamin pyrophosphokinase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q9H3S4 TPK1 "Thiamin pyrophosphokinase 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2QWC1 TPK1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:1352500 Tpk1 "thiamine pyrophosphokinase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1SAD1 TPK1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q5E9T4 TPK1 "Thiamin pyrophosphokinase 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E1C3Q1 TPK1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0267546 DDB_G0267546 "Thiamin pyrophosphokinase 1" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|F5GZG6 TPK1 "Thiamin pyrophosphokinase 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9R0M5TPK1_MOUSE2, ., 7, ., 6, ., 20.40460.87220.9835yesno
Q5E9T4TPK1_BOVIN2, ., 7, ., 6, ., 20.38070.86130.9711yesno
Q9H3S4TPK1_HUMAN2, ., 7, ., 6, ., 20.39840.83940.9465yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.7.60.766
4th Layer2.7.6.2LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query274
PLN02714229 PLN02714, PLN02714, thiamin pyrophosphokinase 1e-163
TIGR01378205 TIGR01378, thi_PPkinase, thiamine pyrophosphokinas 2e-60
cd07995208 cd07995, TPK, Thiamine pyrophosphokinase 3e-60
pfam04263122 pfam04263, TPK_catalytic, Thiamin pyrophosphokinas 1e-35
COG1564212 COG1564, THI80, Thiamine pyrophosphokinase [Coenzy 4e-33
pfam0426566 pfam04265, TPK_B1_binding, Thiamin pyrophosphokina 1e-14
smart0098366 smart00983, TPK_B1_binding, Thiamin pyrophosphokin 9e-12
>gnl|CDD|178316 PLN02714, PLN02714, thiamin pyrophosphokinase Back     alignment and domain information 
 Score =  452 bits (1165), Expect = e-163
 Identities = 188/229 (82%), Positives = 210/229 (91%)

Query: 43  ALVVLNQRLPRFAPLLWQHAKLRLCADGGANRVYDELPQLFPHEDPSDIRRRYKPDLIKG 102
           ALVVLNQRLPRF PLLW+HAKLR+CADGGANR+YDE+P LFP EDP  +R RYKPD+IKG
Sbjct: 1   ALVVLNQRLPRFTPLLWEHAKLRVCADGGANRLYDEMPLLFPDEDPLAVRNRYKPDVIKG 60

Query: 103 DMDSIRKEVMDFYASLGTKVVDESHDQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALG 162
           DMDSIR EV+DFY++LGTK+VDESHDQDTTDLHKC+AYIRD TP+L+KSNL ILV GALG
Sbjct: 61  DMDSIRPEVLDFYSNLGTKIVDESHDQDTTDLHKCIAYIRDSTPDLDKSNLCILVLGALG 120

Query: 163 GRFDHEAGNINVLYRFSDIRIILLSDDCHIQLLPKTHRHDIYIQSSVEGPHCGLIPIGMP 222
           GRFDHEAGNINVLYRF D+RI+LLSDDC I+LLP THRH+I+I SSVEGPHCGLIPIG P
Sbjct: 121 GRFDHEAGNINVLYRFPDLRIVLLSDDCLIRLLPATHRHEIHIDSSVEGPHCGLIPIGGP 180

Query: 223 SGSTSTTGLQWDLDNTETRFGGLVSTSNIVKGEKVTVRSDSDLLWTISI 271
           S ST+TTGLQW+LDNTE RFGGL+STSNIVK +KVTV SDSDLLWTISI
Sbjct: 181 SASTTTTGLQWNLDNTEMRFGGLISTSNIVKEDKVTVESDSDLLWTISI 229

Length = 229
>gnl|CDD|233386 TIGR01378, thi_PPkinase, thiamine pyrophosphokinase Back     alignment and domain information
>gnl|CDD|153431 cd07995, TPK, Thiamine pyrophosphokinase Back     alignment and domain information
>gnl|CDD|217995 pfam04263, TPK_catalytic, Thiamin pyrophosphokinase, catalytic domain Back     alignment and domain information
>gnl|CDD|224480 COG1564, THI80, Thiamine pyrophosphokinase [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|217997 pfam04265, TPK_B1_binding, Thiamin pyrophosphokinase, vitamin B1 binding domain Back     alignment and domain information
>gnl|CDD|214953 smart00983, TPK_B1_binding, Thiamin pyrophosphokinase, vitamin B1 binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 274
PLN02714229 thiamin pyrophosphokinase 100.0
cd07995208 TPK Thiamine pyrophosphokinase. Thiamine pyrophosp 100.0
TIGR01378203 thi_PPkinase thiamine pyrophosphokinase. This mode 100.0
KOG3153250 consensus Thiamine pyrophosphokinase [Coenzyme tra 100.0
COG1564212 THI80 Thiamine pyrophosphokinase [Coenzyme metabol 100.0
PF04263123 TPK_catalytic: Thiamin pyrophosphokinase, catalyti 100.0
PF0426568 TPK_B1_binding: Thiamin pyrophosphokinase, vitamin 99.59
COG4825395 Uncharacterized membrane-anchored protein conserve 98.93
COG1634232 Uncharacterized Rossmann fold enzyme [General func 98.12
PF01973170 MAF_flag10: Protein of unknown function DUF115; In 95.81
COG2604 594 Uncharacterized protein conserved in bacteria [Fun 87.31
smart00852135 MoCF_biosynth Probable molybdopterin binding domai 84.74
PRK08621142 galactose-6-phosphate isomerase subunit LacA; Revi 84.6
PRK12613141 galactose-6-phosphate isomerase subunit LacA; Prov 83.4
cd00758133 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) bindin 82.38
cd00886152 MogA_MoaB MogA_MoaB family. Members of this family 82.19
TIGR02133148 RPI_actino ribose 5-phosphate isomerase. This fami 80.43
>PLN02714 thiamin pyrophosphokinase Back     alignment and domain information 
Probab=100.00  E-value=6.2e-60  Score=421.76  Aligned_cols=229  Identities=82%  Similarity=1.343  Sum_probs=201.5

Q ss_pred             EEEEeCCCCCCCchHHhccCCEEEEEechHHHHHhhcCCCCCCCCcccccCCccccEEeeCCCCCCHHHHHHHHhcCCeE
Q 047888           43 ALVVLNQRLPRFAPLLWQHAKLRLCADGGANRVYDELPQLFPHEDPSDIRRRYKPDLIKGDMDSIRKEVMDFYASLGTKV  122 (274)
Q Consensus        43 avIvlng~~~~~~~~l~~~~~~~I~aDgGa~~l~~~~~~~~~~~~~~~~~~~i~Pd~iiGDfDSi~~~~~~~~~~~g~~i  122 (274)
                      |+|++|+|+|..+..+|++++++|||||||++|++.+...+.+++....+.+++||+|||||||++++++++|+++|+++
T Consensus         1 a~~~~n~~i~~~~~~~~~~a~~~i~aDgGa~~l~~~~~~~~~~~~~~~~~~gi~Pd~iiGDfDSi~~e~~~~~~~~~~~i   80 (229)
T PLN02714          1 ALVVLNQRLPRFTPLLWEHAKLRVCADGGANRLYDEMPLLFPDEDPLAVRNRYKPDVIKGDMDSIRPEVLDFYSNLGTKI   80 (229)
T ss_pred             CEEEcCCccHHHHHHHHhcCcEEEEecCcHHHHHhhhhhccccccccccccCcCCCEEEeeccCCCHHHHHHHHHCCCEE
Confidence            68999999987667889999999999999999998544434444444445799999999999999999999999999999


Q ss_pred             EEcCCCCChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCCCChhhHHHHHHHHHhcCCCeEEEEeCCeEEEEecCCceeE
Q 047888          123 VDESHDQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALGGRFDHEAGNINVLYRFSDIRIILLSDDCHIQLLPKTHRHD  202 (274)
Q Consensus       123 i~~~~dKD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~GGR~DH~lani~~L~~~~~~~i~li~~~~~i~ll~~g~~~~  202 (274)
                      +++|||||+||+||||+++.++.+.......+|+++||+|||+||+||||++|+++.+.++++++++++++++++++++.
T Consensus        81 ~~~~~eKD~TD~e~Al~~~~~~~~~~~~~~~~I~v~Ga~GGRlDH~laNi~~L~~~~~~~i~lid~~~~i~~l~~~~~~~  160 (229)
T PLN02714         81 VDESHDQDTTDLHKCIAYIRDSTPDLDKSNLCILVLGALGGRFDHEAGNINVLYRFPDLRIVLLSDDCLIRLLPATHRHE  160 (229)
T ss_pred             EECCCCcccCHHHHHHHHHHHhccccccCCceEEEEcccCCchHHHHHHHHHHHhcCCceEEEEcCCcEEEEEcCCCeEE
Confidence            99999999999999999999765532233448999999999999999999999998878999999999999998666777


Q ss_pred             EEEccCCCCCEEEEEeecCCcccEEEccceeecCCcccccCCceeeeeeEECceEEEEEeCCEEEEEEE
Q 047888          203 IYIQSSVEGPHCGLIPIGMPSGSTSTTGLQWDLDNTETRFGGLVSTSNIVKGEKVTVRSDSDLLWTISI  271 (274)
Q Consensus       203 i~~~~~~~g~~~SliPl~~~~~~vt~~Glky~L~~~~l~~~~~~s~SN~~~~~~v~I~~~~g~l~~i~~  271 (274)
                      +.......+++|||||+++++++||++||||||++..+.++.++|+||++.+++++|+++.+++|+|++
T Consensus       161 i~~~~~~~~~~~Slipl~~~~~~vt~~Glky~L~~~~l~~~~~~~vSNe~~~~~v~I~~~~~~~~t~~~  229 (229)
T PLN02714        161 IHIDSSVEGPHCGLIPIGGPSASTTTTGLQWNLDNTEMRFGGLISTSNIVKEDKVTVESDSDLLWTISI  229 (229)
T ss_pred             EeecCCCCCCEEEEEECCCCcceEEeeCceeeCCCCeeeCCCceEEeeEEcCCEEEEEeCCCEEEEeeC
Confidence            754334578999999999888899999999999999999999999999999999999999999999984

>cd07995 TPK Thiamine pyrophosphokinase Back     alignment and domain information
>TIGR01378 thi_PPkinase thiamine pyrophosphokinase Back     alignment and domain information
>KOG3153 consensus Thiamine pyrophosphokinase [Coenzyme transport and metabolism] Back     alignment and domain information
>COG1564 THI80 Thiamine pyrophosphokinase [Coenzyme metabolism] Back     alignment and domain information
>PF04263 TPK_catalytic: Thiamin pyrophosphokinase, catalytic domain; InterPro: IPR007371 Thiamin pyrophosphokinase (TPK, 2 Back     alignment and domain information
>PF04265 TPK_B1_binding: Thiamin pyrophosphokinase, vitamin B1 binding domain; InterPro: IPR007373 Thiamin pyrophosphokinase (TPK, 2 Back     alignment and domain information
>COG4825 Uncharacterized membrane-anchored protein conserved in bacteria [Function unknown] Back     alignment and domain information
>COG1634 Uncharacterized Rossmann fold enzyme [General function prediction only] Back     alignment and domain information
>PF01973 MAF_flag10: Protein of unknown function DUF115; InterPro: IPR002826 The prokaryotic proteins in this family have no known function Back     alignment and domain information
>COG2604 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>smart00852 MoCF_biosynth Probable molybdopterin binding domain Back     alignment and domain information
>PRK08621 galactose-6-phosphate isomerase subunit LacA; Reviewed Back     alignment and domain information
>PRK12613 galactose-6-phosphate isomerase subunit LacA; Provisional Back     alignment and domain information
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD) Back     alignment and domain information
>cd00886 MogA_MoaB MogA_MoaB family Back     alignment and domain information
>TIGR02133 RPI_actino ribose 5-phosphate isomerase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query274
3s4y_A247 Crystal Structure Of Human Thiamin Pyrophosphokinas 1e-41
1ig3_A263 Mouse Thiamin Pyrophosphokinase Complexed With Thia 2e-41
1ig0_A319 Crystal Structure Of Yeast Thiamin Pyrophosphokinas 1e-18
2g9z_A348 Thiamin Pyrophosphokinase From Candida Albicans Len 5e-18
2hh9_A339 Thiamin Pyrophosphokinase From Candida Albicans Len 7e-18
3l8m_A212 Crystal Structure Of A Probable Thiamine Pyrophosph 4e-07
3lm8_A222 Crystal Structure Of Thiamine Pyrophosphokinase Fro 2e-06
2omk_A231 Structure Of The Bacteroides Thetaiotaomicron Thiam 4e-06
>pdb|3S4Y|A Chain A, Crystal Structure Of Human Thiamin Pyrophosphokinase 1 Length = 247 Back     alignment and structure 
Iteration: 1

 Score =  166 bits (421), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 97/242 (40%), Positives = 142/242 (58%), Gaps = 21/242 (8%)
Query: 39  SLTYALVVLNQRLPRFAPLLWQHAKLRLCADGGANRVYDELPQLFPHEDPSDIRRRYKPD 98
           +L Y LV+LNQ L  +   LW  A LR CADGGANR+YD              R  + P+
Sbjct: 20  NLKYCLVILNQPLDNYFRHLWNKALLRACADGGANRLYD---------ITEGERESFLPE 70
Query: 99  LIKGDMDSIRKEVMDFYASLGTKVVDESHDQDTTDLHKCVAYIRDCTPNLEKSNLR---I 155
            I GD DSIR EV ++YA+ G +++  + DQD TD  KC+  ++     +E+ +L+   I
Sbjct: 71  FINGDFDSIRPEVREYYATKGCELI-STPDQDHTDFTKCLKMLQK---KIEEKDLKVDVI 126
Query: 156 LVAGALGGRFDHEAGNINVLYRFSDIR---IILLSDDCHIQLLPKTHRHDIYIQSSVEGP 212
           +  G L GRFD    ++N L++ + I    II++ ++  I LL +  +H +++ + +EG 
Sbjct: 127 VTLGGLAGRFDQIMASVNTLFQATHITPFPIIIIQEESLIYLL-QPGKHRLHVDTGMEGD 185
Query: 213 HCGLIPIGMPSGSTSTTGLQWDLDNTETRFGGLVSTSNIVKGEK-VTVRSDSDLLWTISI 271
            CGLIP+G P    +TTGL+W+L N    FG LVSTSN   G   VTV +D  LLWT++I
Sbjct: 186 WCGLIPVGQPCMQVTTTGLKWNLTNDVLAFGTLVSTSNTYDGSGVVTVETDHPLLWTMAI 245
Query: 272 KN 273
           K+
Sbjct: 246 KS 247
>pdb|1IG3|A Chain A, Mouse Thiamin Pyrophosphokinase Complexed With Thiamin Length = 263 Back     alignment and structure
>pdb|1IG0|A Chain A, Crystal Structure Of Yeast Thiamin Pyrophosphokinase Length = 319 Back     alignment and structure
>pdb|2G9Z|A Chain A, Thiamin Pyrophosphokinase From Candida Albicans Length = 348 Back     alignment and structure
>pdb|2HH9|A Chain A, Thiamin Pyrophosphokinase From Candida Albicans Length = 339 Back     alignment and structure
>pdb|3L8M|A Chain A, Crystal Structure Of A Probable Thiamine Pyrophosphokinase From Staphylococcus Saprophyticus Subsp. Saprophyticus. Northeast Structural Genomics Consortium Target Id Syr86 Length = 212 Back     alignment and structure
>pdb|3LM8|A Chain A, Crystal Structure Of Thiamine Pyrophosphokinase From Bacillus Subtilis, Northeast Structural Genomics Consortium Target Sr677 Length = 222 Back     alignment and structure
>pdb|2OMK|A Chain A, Structure Of The Bacteroides Thetaiotaomicron Thiamin Pyrophosphokinase Length = 231 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query274
2g9z_A348 Thiamine pyrophosphokinase; thiamin-PNP, TPK, thia 1e-69
1ig0_A319 Thiamin pyrophosphokinase; protein-substrate compl 5e-62
3s4y_A247 Thiamin pyrophosphokinase 1; structural genomics, 6e-62
3lm8_A222 Thiamine pyrophosphokinase; structural genomics, P 7e-43
3mel_A222 Thiamin pyrophosphokinase family protein; structur 7e-41
3k94_A223 Thiamin pyrophosphokinase; structural genomics, PS 1e-40
3ihk_A218 Thiamin pyrophosphokinase; structural genomics, PS 5e-38
3cq9_A227 Uncharacterized protein LP_1622; Q88WK7_lacpl, tra 7e-38
3l8m_A212 Probable thiamine pyrophosphokinase; thiamin dipho 2e-36
2omk_A231 Hypothetical protein; succinimide, thiamin pyropho 3e-36
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
>2g9z_A Thiamine pyrophosphokinase; thiamin-PNP, TPK, thiamin pyrophosphokinase, structural GENO profun, bacterial targets at IGS-CNRS, france, BIGS; HET: VNP; 1.96A {Candida albicans} PDB: 2hh9_A* Length = 348 Back     alignment and structure
 Score =  218 bits (555), Expect = 1e-69
 Identities = 77/312 (24%), Positives = 129/312 (41%), Gaps = 47/312 (15%)

Query: 8   LTVNANGNAFMELMTHSSSFLLPSTPTDSRPSLTYALVVLNQRLPRFAPLLWQHAKLRLC 67
           L ++   ++      H   F+     T +  +    L++LNQ++      LW+  ++ +C
Sbjct: 31  LIISPPSDSSSSSYNHIQPFVYL-ESTATTQTNHNVLLILNQKITIDLISLWKKCEIIVC 89

Query: 68  ADGGANRVYDELPQLFPHEDPSD-IRRRYKPDLIKGDMDSIRKEVMDFYASLGTKVVDES 126
           ADGGAN +Y+       H    +  R  Y PD I GD DSI  +V  +Y S G+K++ + 
Sbjct: 90  ADGGANSLYEYFNDNNHHHHHENLQRSDYIPDYIVGDFDSISPDVKTYYESHGSKIIRQ- 148

Query: 127 HDQDTTDLHKCVAYIRD------------------------------CTPNLEKSNLRIL 156
             Q   D  K +  I+                                +  +   ++ I 
Sbjct: 149 SSQYYNDFTKSIHCIQLHYQLNHTKENWFESIDEVDGLAKLWNGLNNSSDVVVDIDITIY 208

Query: 157 VAGALGGRFDHEAGNINVLYRF----SDIRIILLSDDCHIQLLPKTHRHDIYIQSSV--- 209
           V  A+GGRFD    +IN LY        + +  ++ +  I LL K   +  Y    +   
Sbjct: 209 VLNAIGGRFDQTVQSINQLYIMNEDYPKVTVFFITTNDIIFLLKKGVNYISYKNRLMFHK 268

Query: 210 -----EGPHCGLIPIGMPS-GSTSTTGLQWDLDNTETRFGGLVSTSNIVKGEK-VTVRSD 262
                  P CGL+P+   +    ++ GL++D+ N +T   G VS+SN + GE    V   
Sbjct: 269 DNGSSPTPTCGLLPLSNKTPIILNSYGLKYDMRNWKTEMLGQVSSSNRISGETGFIVECS 328

Query: 263 SDLLWTISIKNQ 274
            D++  I I  Q
Sbjct: 329 DDIVMNIEIDVQ 340
>1ig0_A Thiamin pyrophosphokinase; protein-substrate complex, compound active site, alpha-beta- alpha, beta sandwich, transferase; HET: VIB; 1.80A {Saccharomyces cerevisiae} SCOP: b.82.6.1 c.100.1.1 Length = 319 Back     alignment and structure
>3s4y_A Thiamin pyrophosphokinase 1; structural genomics, structural genomics consortium, transferase; HET: TPP; 1.80A {Homo sapiens} PDB: 1ig3_A* 2f17_A* Length = 247 Back     alignment and structure
>3lm8_A Thiamine pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: VIB; 2.60A {Bacillus subtilis} Length = 222 Back     alignment and structure
>3mel_A Thiamin pyrophosphokinase family protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium; HET: TPP; 2.79A {Enterococcus faecalis} Length = 222 Back     alignment and structure
>3k94_A Thiamin pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.10A {Geobacillus thermodenitrificans} Length = 223 Back     alignment and structure
>3ihk_A Thiamin pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, SMR83; HET: TPP; 3.00A {Streptococcus mutans} Length = 218 Back     alignment and structure
>3cq9_A Uncharacterized protein LP_1622; Q88WK7_lacpl, transferase, thiamine pyrophosphokinase, NESG, LPR114, structural genomics, PSI-2; 2.20A {Lactobacillus plantarum WCFS1} Length = 227 Back     alignment and structure
>3l8m_A Probable thiamine pyrophosphokinase; thiamin diphosphate biosynthetic process, ATP binding, structural genomics, PSI-2; 2.40A {Staphylococcus saprophyticus} Length = 212 Back     alignment and structure
>2omk_A Hypothetical protein; succinimide, thiamin pyrophosphokinase, structural genomics, protein structure initiative; 1.80A {Bacteroides thetaiotaomicron} Length = 231 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query274
3s4y_A247 Thiamin pyrophosphokinase 1; structural genomics, 100.0
3k94_A223 Thiamin pyrophosphokinase; structural genomics, PS 100.0
3lm8_A222 Thiamine pyrophosphokinase; structural genomics, P 100.0
2g9z_A348 Thiamine pyrophosphokinase; thiamin-PNP, TPK, thia 100.0
3mel_A222 Thiamin pyrophosphokinase family protein; structur 100.0
3ihk_A218 Thiamin pyrophosphokinase; structural genomics, PS 100.0
3l8m_A212 Probable thiamine pyrophosphokinase; thiamin dipho 100.0
1ig0_A319 Thiamin pyrophosphokinase; protein-substrate compl 100.0
3cq9_A227 Uncharacterized protein LP_1622; Q88WK7_lacpl, tra 100.0
2omk_A231 Hypothetical protein; succinimide, thiamin pyropho 100.0
3he8_A149 Ribose-5-phosphate isomerase; CTRPI B, isomerizati 83.64
3s5p_A166 Ribose 5-phosphate isomerase; structural genomics, 82.09
3ph3_A169 Ribose-5-phosphate isomerase; alpha-beta-alpha san 82.06
1o1x_A155 Ribose-5-phosphate isomerase RPIB; structural geno 81.5
>3s4y_A Thiamin pyrophosphokinase 1; structural genomics, structural genomics consortium, transferase; HET: TPP; 1.80A {Homo sapiens} PDB: 1ig3_A* 2f17_A* Back     alignment and structure
Probab=100.00  E-value=3.8e-59  Score=419.67  Aligned_cols=218  Identities=43%  Similarity=0.785  Sum_probs=195.5

Q ss_pred             CCCcEEEEEeCCCCCCCchHHhccCCEEEEEechHHHHHhhcCCCCCCCCcccccCCccccEEeeCCCCCCHHHHHHHHh
Q 047888           38 PSLTYALVVLNQRLPRFAPLLWQHAKLRLCADGGANRVYDELPQLFPHEDPSDIRRRYKPDLIKGDMDSIRKEVMDFYAS  117 (274)
Q Consensus        38 ~~~~~avIvlng~~~~~~~~l~~~~~~~I~aDgGa~~l~~~~~~~~~~~~~~~~~~~i~Pd~iiGDfDSi~~~~~~~~~~  117 (274)
                      ..+++|+||+||+++..+..+|++++++||||||||+|++++++         .+.++.||+|||||||++++++++|++
T Consensus        19 ~~~~~~lIv~ng~~~~~~~~~~~~~~~~i~aDgGa~~l~~~~~~---------~~~~~~Pd~ivGD~DSi~~~~~~~~~~   89 (247)
T 3s4y_A           19 GNLKYCLVILNQPLDNYFRHLWNKALLRACADGGANRLYDITEG---------ERESFLPEFINGDFDSIRPEVREYYAT   89 (247)
T ss_dssp             -CCCEEEEECSSCCCTTHHHHHHHCSCEEEETTHHHHHHHHTTT---------CGGGCCCSEEEECCSSSCHHHHHHHHH
T ss_pred             CCCCEEEEEECCcchHHHHHHHhhCCEEEEEchHHHHHHHhccc---------cccCCCccEEEcCCcCCCHHHHHHHHh
Confidence            34689999999999986678999999999999999999984331         246899999999999999999999999


Q ss_pred             cCCeEEEcCCCCChhHHHHHHHHHHHh------CCCCcCCCcEEEEEecCCCChhhHHHHHHHHHhcC---CCeEEEEeC
Q 047888          118 LGTKVVDESHDQDTTDLHKCVAYIRDC------TPNLEKSNLRILVAGALGGRFDHEAGNINVLYRFS---DIRIILLSD  188 (274)
Q Consensus       118 ~g~~ii~~~~dKD~TD~ekAl~~~~~~------~~~~~~~~~~I~i~Ga~GGR~DH~lani~~L~~~~---~~~i~li~~  188 (274)
                      +++++++ +||||+||+||||+++.++      ++.      +|+++||+|||+||+|+||++|+++.   +.+++++++
T Consensus        90 ~~~~i~~-~peKD~TD~ekAl~~~~~~~~~~~~~~~------~I~ilGa~GGR~DH~Lani~lL~~~~~~~~~~i~lid~  162 (247)
T 3s4y_A           90 KGCELIS-TPDQDHTDFTKCLKMLQKKIEEKDLKVD------VIVTLGGLAGRFDQIMASVNTLFQATHITPFPIIIIQE  162 (247)
T ss_dssp             TTCEEEE-CCCTTSCHHHHHHHHHHHHHHHTTCCCS------EEEEECCSSSSHHHHHHHHHHHHHGGGTCSSCEEEEET
T ss_pred             cCCEEEE-CCCCCcCHHHHHHHHHHHhhhhccCCCC------EEEEEecCCCchhHHHHHHHHHHHHhhccCceEEEEeC
Confidence            9999986 6899999999999999876      455      89999999999999999999999873   478999999


Q ss_pred             CeEEEEecCCceeEEEEccCCCCCEEEEEeecCCcccEEEccceeecCCcccccCCceeeeeeEECc-eEEEEEeCCEEE
Q 047888          189 DCHIQLLPKTHRHDIYIQSSVEGPHCGLIPIGMPSGSTSTTGLQWDLDNTETRFGGLVSTSNIVKGE-KVTVRSDSDLLW  267 (274)
Q Consensus       189 ~~~i~ll~~g~~~~i~~~~~~~g~~~SliPl~~~~~~vt~~Glky~L~~~~l~~~~~~s~SN~~~~~-~v~I~~~~g~l~  267 (274)
                      ++.+|++++| +|++..+....|++|||||++++++++|++||||||+++.+.+++++|+||++.++ .|+|+++++++|
T Consensus       163 ~n~i~ll~~G-~~~i~~~~~~~g~~vSlipl~~~~~~lt~~Glky~L~~~~l~~g~~~~~SNe~~~~~~v~I~t~~~~l~  241 (247)
T 3s4y_A          163 ESLIYLLQPG-KHRLHVDTGMEGDWCGLIPVGQPCMQVTTTGLKWNLTNDVLAFGTLVSTSNTYDGSGVVTVETDHPLLW  241 (247)
T ss_dssp             TEEEEEECSE-EEEEEC---CEEEEEEEECCSSCEEEEEEESBSSCCSSEEEBTTTBCEEEECBCSCSEEEEEESSCEEE
T ss_pred             CeEEEEEcCC-CEEEEEcCCCCCCEEEEEECCCceeEEEEeccEEECCCCeecCCCceEEeeEEeCCceEEEEECCCEEE
Confidence            9999999887 78887644455799999999988889999999999999999999999999999988 899999999999


Q ss_pred             EEEEc
Q 047888          268 TISIK  272 (274)
Q Consensus       268 ~i~~~  272 (274)
                      +|++|
T Consensus       242 t~~~~  246 (247)
T 3s4y_A          242 TMAIK  246 (247)
T ss_dssp             EEEEC
T ss_pred             EEEec
Confidence            99997
>3k94_A Thiamin pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.10A {Geobacillus thermodenitrificans} Back     alignment and structure
>3lm8_A Thiamine pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: VIB; 2.60A {Bacillus subtilis} Back     alignment and structure
>2g9z_A Thiamine pyrophosphokinase; thiamin-PNP, TPK, thiamin pyrophosphokinase, structural GENO profun, bacterial targets at IGS-CNRS, france, BIGS; HET: VNP; 1.96A {Candida albicans} PDB: 2hh9_A* Back     alignment and structure
>3mel_A Thiamin pyrophosphokinase family protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium; HET: TPP; 2.79A {Enterococcus faecalis} Back     alignment and structure
>3ihk_A Thiamin pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, SMR83; HET: TPP; 3.00A {Streptococcus mutans} Back     alignment and structure
>3l8m_A Probable thiamine pyrophosphokinase; thiamin diphosphate biosynthetic process, ATP binding, structural genomics, PSI-2; 2.40A {Staphylococcus saprophyticus} Back     alignment and structure
>1ig0_A Thiamin pyrophosphokinase; protein-substrate complex, compound active site, alpha-beta- alpha, beta sandwich, transferase; HET: VIB; 1.80A {Saccharomyces cerevisiae} SCOP: b.82.6.1 c.100.1.1 Back     alignment and structure
>3cq9_A Uncharacterized protein LP_1622; Q88WK7_lacpl, transferase, thiamine pyrophosphokinase, NESG, LPR114, structural genomics, PSI-2; 2.20A {Lactobacillus plantarum WCFS1} Back     alignment and structure
>2omk_A Hypothetical protein; succinimide, thiamin pyrophosphokinase, structural genomics, protein structure initiative; 1.80A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3he8_A Ribose-5-phosphate isomerase; CTRPI B, isomerization; 1.90A {Clostridium thermocellum} PDB: 3hee_A* Back     alignment and structure
>3s5p_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.30A {Giardia lamblia} Back     alignment and structure
>3ph3_A Ribose-5-phosphate isomerase; alpha-beta-alpha sandwich fold; HET: RB5; 2.07A {Clostridium thermocellum} SCOP: c.121.1.1 PDB: 3ph4_A* Back     alignment and structure
>1o1x_A Ribose-5-phosphate isomerase RPIB; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.90A {Thermotoga maritima} SCOP: c.121.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 274
d1ig3a2169 c.100.1.1 (A:10-178) Thiamin pyrophosphokinase, ca 5e-48
d1ig0a2221 c.100.1.1 (A:3-223) Thiamin pyrophosphokinase, cat 1e-39
d1ig0a196 b.82.6.1 (A:224-319) Thiamin pyrophosphokinase, su 7e-28
d1ig3a185 b.82.6.1 (A:179-263) Thiamin pyrophosphokinase, su 3e-26
>d1ig3a2 c.100.1.1 (A:10-178) Thiamin pyrophosphokinase, catalytic domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 169 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Thiamin pyrophosphokinase, catalytic domain
superfamily: Thiamin pyrophosphokinase, catalytic domain
family: Thiamin pyrophosphokinase, catalytic domain
domain: Thiamin pyrophosphokinase, catalytic domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  155 bits (393), Expect = 5e-48
 Identities = 61/171 (35%), Positives = 86/171 (50%), Gaps = 16/171 (9%)

Query: 21  MTHSSSFLLPSTPTDSRPSLTYALVVLNQRLPRFAPLLWQHAKLRLCADGGANRVYDELP 80
           M H+ + L P  PT +   L Y LVVLNQ L      LW+ A LR CADGGAN +YD   
Sbjct: 12  MEHAFTPLEPLLPTGN---LKYCLVVLNQPLDARFRHLWKKALLRACADGGANHLYDLTE 68

Query: 81  QLFPHEDPSDIRRRYKPDLIKGDMDSIRKEVMDFYASLGTKVVDESHDQDTTDLHKCVAY 140
                      R  + P+ + GD DSIR EV ++Y   G  ++  + DQD TD  KC+  
Sbjct: 69  ---------GERESFLPEFVSGDFDSIRPEVKEYYTKKGCDLI-STPDQDHTDFTKCLQV 118

Query: 141 IRDCTPNLEKSNLRILVAGALGGRFDHEAGNINVLYRFS---DIRIILLSD 188
           ++      E     I+  G LGGRFD    ++N L++ +    + II++  
Sbjct: 119 LQRKIEEKELQVDVIVTLGGLGGRFDQIMASVNTLFQATHITPVPIIIIQK 169
>d1ig0a2 c.100.1.1 (A:3-223) Thiamin pyrophosphokinase, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 221 Back     information, alignment and structure
>d1ig0a1 b.82.6.1 (A:224-319) Thiamin pyrophosphokinase, substrate-binding domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 96 Back     information, alignment and structure
>d1ig3a1 b.82.6.1 (A:179-263) Thiamin pyrophosphokinase, substrate-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 85 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query274
d1ig3a2169 Thiamin pyrophosphokinase, catalytic domain {Mouse 100.0
d1ig0a2221 Thiamin pyrophosphokinase, catalytic domain {Baker 100.0
d1ig3a185 Thiamin pyrophosphokinase, substrate-binding domai 99.87
d1ig0a196 Thiamin pyrophosphokinase, substrate-binding domai 99.73
d1nn4a_159 Alternate ribose 5-phosphate isomerase B, RpiB {Es 81.99
d2vvpa1156 Alternate ribose 5-phosphate isomerase B, RpiB {My 81.75
d1o1xa_145 Putative sugar-phosphate isomerase {Thermotoga mar 81.22
>d1ig3a2 c.100.1.1 (A:10-178) Thiamin pyrophosphokinase, catalytic domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Thiamin pyrophosphokinase, catalytic domain
superfamily: Thiamin pyrophosphokinase, catalytic domain
family: Thiamin pyrophosphokinase, catalytic domain
domain: Thiamin pyrophosphokinase, catalytic domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.7e-41  Score=283.30  Aligned_cols=155  Identities=39%  Similarity=0.649  Sum_probs=129.9

Q ss_pred             HHhhhhccccccCCCCCCCCCCCcEEEEEeCCCCCCCchHHhccCCEEEEEechHHHHHhhcCCCCCCCCcccccCCccc
Q 047888           18 MELMTHSSSFLLPSTPTDSRPSLTYALVVLNQRLPRFAPLLWQHAKLRLCADGGANRVYDELPQLFPHEDPSDIRRRYKP   97 (274)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~avIvlng~~~~~~~~l~~~~~~~I~aDgGa~~l~~~~~~~~~~~~~~~~~~~i~P   97 (274)
                      |..-|.|..++.|      ....++|+|++|+|++.++..+|++++++||||||||+|++++.    .     .+.++.|
T Consensus        12 m~~~~~p~~~~~~------~~~~~~aliiLN~pi~~~~~~lw~~a~~~I~aDGGAN~L~d~~~----~-----~~~~~~P   76 (169)
T d1ig3a2          12 MEHAFTPLEPLLP------TGNLKYCLVVLNQPLDARFRHLWKKALLRACADGGANHLYDLTE----G-----ERESFLP   76 (169)
T ss_dssp             CCEEECTTGGGSS------SCCCCEEEEECSSCCCTTHHHHHHHCSEEEEETTHHHHHHHTCT----T-----CGGGCCC
T ss_pred             cccccCcccccCC------CCCcCEEEEEeCCCcCHHHHHHHHhCCEEEEEcCHHHHHHHHhh----c-----cccCCCC
Confidence            4455666666666      23468999999999999888999999999999999999998432    1     2368999


Q ss_pred             cEEeeCCCCCCHHHHHHHHhcCCeEEEcCCCCChhHHHHHHHHHHHhCCCCcCCCcEEEEEecCCCChhhHHHHHHHHHh
Q 047888           98 DLIKGDMDSIRKEVMDFYASLGTKVVDESHDQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALGGRFDHEAGNINVLYR  177 (274)
Q Consensus        98 d~iiGDfDSi~~~~~~~~~~~g~~ii~~~~dKD~TD~ekAl~~~~~~~~~~~~~~~~I~i~Ga~GGR~DH~lani~~L~~  177 (274)
                      |+|+|||||++++++++|+++|+++++ .||||+||+||||+++.++.+......+.|+++|++|||+||+|+|+++|++
T Consensus        77 D~IiGDfDSi~~~~~~~~~~~g~~ii~-~~dQD~TD~eKAl~~~~~~~~~~~~~~~~I~vlG~~GGR~DH~lanl~~L~~  155 (169)
T d1ig3a2          77 EFVSGDFDSIRPEVKEYYTKKGCDLIS-TPDQDHTDFTKCLQVLQRKIEEKELQVDVIVTLGGLGGRFDQIMASVNTLFQ  155 (169)
T ss_dssp             SEEEECTTSSCHHHHHHHHHTTCEEEE-CCCTTSCHHHHHHHHHHHHHHHTTCCCSEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred             CEEEecCCCCChHHHHHHHhcCCeEEE-CcccCcchHHHHHHHHHHhhhhhccCCCEEEEEeCCCCcHHHHHHHHHHHHH
Confidence            999999999999999999999999986 5799999999999999765333333445999999999999999999999999


Q ss_pred             cCC---CeEEEEeC
Q 047888          178 FSD---IRIILLSD  188 (274)
Q Consensus       178 ~~~---~~i~li~~  188 (274)
                      +.+   .+++++++
T Consensus       156 ~~~~~~~~VIll~e  169 (169)
T d1ig3a2         156 ATHITPVPIIIIQK  169 (169)
T ss_dssp             GGGTCSSCEEEEET
T ss_pred             hhcCCCCcEEEecC
Confidence            874   57877764
>d1ig0a2 c.100.1.1 (A:3-223) Thiamin pyrophosphokinase, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ig3a1 b.82.6.1 (A:179-263) Thiamin pyrophosphokinase, substrate-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ig0a1 b.82.6.1 (A:224-319) Thiamin pyrophosphokinase, substrate-binding domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nn4a_ c.121.1.1 (A:) Alternate ribose 5-phosphate isomerase B, RpiB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2vvpa1 c.121.1.1 (A:3-158) Alternate ribose 5-phosphate isomerase B, RpiB {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1o1xa_ c.121.1.1 (A:) Putative sugar-phosphate isomerase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure