Citrus Sinensis ID: 047915

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390---
MYQSLVEMMMEPKGGRIASGTEYSWCRAVPGGTGIAVLAILTSKVPETSGLQDALNKLQSYHPILRSRLHTNPSKNTFSFVTSPTTFIQVKSFNLSSTSKILESSERFSIAPLQLILEHELNENAWCNLKCTSTTDMLYASSYALPDAKWVVALRLHVAACDRTTAVSLLKELLLVLVSDDDQEQEGRGEVNLAIEALIPKGKAKKALWARGRDMLTYSVNSLKSTNLKFIDAKSPRSSQVVRLQLNKDDTERILLTCKSRGIKLCGMLAAAGLIAAHNSDNQRKYAVATLTDCRSILEPPLSNHRFGFYHSAIMNTHLIKSGEKLGDLAKKIYTAFVNSKHCNRHFSDMADLNFLMCKAIENPSLTPASSLRSSFIYQLKNDIGNPNLSSQP
cccccHHccccccccccccHHHHHHHHcccccccEEEEEEEEEccccHHHHHHHHHHHHHHccccccEEEEcccccEEEEEccccccEEEEEccccccHHHHHccHHHcccHHHHHHHHHHHHHHHHcccccccccEEEEEEEEEccccEEEEEEEHHHHHHHHcHHHHHHHHHHHHHccccccccccccccHHHHHHcccHHHHHHHHHHHccccccccccccccccccccccccccccEEEEEEcHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccEEEEEEcccccccccccccccEEEEcccccEEEEccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccccccccccc
cccHHHHHEEccccccccccccccHHHcccccHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHEEEcccccccEEEEccccccEEccccccccccHHcccccccccHHHHHHHHHHHcccccccccccccccEEEEEEEEcccccEEEEEEEEHHHHcHHHHHHHHHHHHHHHHccccccccccccccHcHHHHcccccccccHHHHcHHEEEEEccccccccccccccccccccEEEEEEccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccEEEEEEEcHHHHccccccccccHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHcccccccccccccc
MYQSLVEMMmepkggriasgteyswcravpggtGIAVLAILTskvpetsgLQDALNKLQSYhpilrsrlhtnpskntfsfvtspttfiQVKSFNLSstskilesserfsiAPLQLILEHElnenawcnlkctsttdmlyassyalpdAKWVVALRLHVAACDRTTAVSLLKELLLVLvsdddqeqegrgEVNLAIEALIPKGKAKKALWARGRDMLTYSVNSlkstnlkfidaksprssQVVRLQLNKDDTERILLTCKSRGIKLCGMLAAAGLiaahnsdnQRKYAVATLTDcrsilepplsnhrfgfyhsAIMNTHLIKSGEKLGDLAKKIYTAFVnskhcnrhfsdmaDLNFLMCKaienpsltpasslrSSFIYQLKndignpnlssqp
MYQSLVEMMMEPKGGRIASGTEYSWCRAVPGGTGIAVLAILTSKVPETSGLQDALNKLQSYHPILrsrlhtnpskntFSFVTSPTTFIQVKSFNLSSTSKILESSERFSIAPLQLILEHELNENAWCNLKCTSTTDMLYASSYALPDAKWVVALRLHVAACDRTTAVSLLKELLLVLvsdddqeqegRGEVNLAIEALIPKGKAKKALWARGRDMLTYSVNslkstnlkfidaksprssqvvrlqlnkddterILLTCKSRGIKLCGMLAAAGLIAAHNSDNQRKYAVATLTDCRSILEPPLSNHRFGFYHSAIMNTHLIKSGEKLGDLAKKIYTAFVNSKHCNRHFSDMADLNFLMCKAIENPSLTPASSLRSSFIYQLKndignpnlssqp
MYQSLVEMMMEPKGGRIASGTEYSWCRAVPGGTGIAVLAILTSKVPETSGLQDALNKLQSYHPILRSRLHTNPSKNTFSFVTSPTTFIQVKSFNLSSTSKILESSERFSIAPLQLILEHELNENAWCNLKCTSTTDMLYASSYALPDAKWVVALRLHVAACDRTTAvsllkelllvlvsdddqeqEGRGEVNLAIEALIPKGKAKKALWARGRDMLTYSVNSLKSTNLKFIDAKSPRSSQVVRLQLNKDDTERILLTCKSRGIKLCGMLAAAGLIAAHNSDNQRKYAVATLTDCRSILEPPLSNHRFGFYHSAIMNTHLIKSGEKLGDLAKKIYTAFVNSKHCNRHFSDMADLNFLMCKAIENPSLTPASSLRSSFIYQLKNDIGNPNLSSQP
****************IASGTEYSWCRAVPGGTGIAVLAILTSKVPETSGLQDALNKLQSYHPILRSRLHT***KNTFSFVTSPTTFIQVKSFNLSSTSKILESSERFSIAPLQLILEHELNENAWCNLKCTSTTDMLYASSYALPDAKWVVALRLHVAACDRTTAVSLLKELLLVLVSD*********EVNLAIEALIPKGKAKKALWARGRDMLTYSVNSLKSTNLKFID********VVRLQLNKDDTERILLTCKSRGIKLCGMLAAAGLIAAHNSDNQRKYAVATLTDCRSILEPPLSNHRFGFYHSAIMNTHLIKSGEKLGDLAKKIYTAFVNSKHCNRHFSDMADLNFLMCKAIENP**********SFIYQL*************
***SL****M******IASGTEYSWCRAVPGGTGIAVLAILTSKVPETSGLQDALNKLQSYHPILRSRLHTNPSKNTFSFVTSPTTFIQVKSFNLSSTSKILESSERFSIAPLQLILEHELNENAWCNLKCTSTTDMLYASSYALPDAKWVVALRLHVAACDRTTAVSLLKELLLVLVSDDDQEQEGRGEVNLAIEALIPKGKAKKALWARGRDMLTYSVNSLKSTNLKFIDAKSPRSSQVVRLQLNKDDTERILLTCKSRGIKLCGMLAAAGLIAAHNSDNQRKYAVATLTDCRSILEPPLSNHRFGFYHSAIMNTHLIKSGEKLGDLAKKIYTAFVNSKHCNRHFSDMADLNFLMCKAIENPSLTPASSLRSSFIYQLKNDI**P******
MYQSLVEMMMEPKGGRIASGTEYSWCRAVPGGTGIAVLAILTSKVPETSGLQDALNKLQSYHPILRSRLHTNPSKNTFSFVTSPTTFIQVKSFNLSSTSKILESSERFSIAPLQLILEHELNENAWCNLKCTSTTDMLYASSYALPDAKWVVALRLHVAACDRTTAVSLLKELLLVLVSDDDQEQEGRGEVNLAIEALIPKGKAKKALWARGRDMLTYSVNSLKSTNLKFIDAKSPRSSQVVRLQLNKDDTERILLTCKSRGIKLCGMLAAAGLIAAHNSDNQRKYAVATLTDCRSILEPPLSNHRFGFYHSAIMNTHLIKSGEKLGDLAKKIYTAFVNSKHCNRHFSDMADLNFLMCKAIENPSLTPASSLRSSFIYQLKNDIGNPNLSSQP
*YQSLVEMMMEPKGGRIASGTEYSWCRAVPGGTGIAVLAILTSKVPETSGLQDALNKLQSYHPILRSRLHTNPSKNTFSFVTSPTTFIQVKSFNLSSTSKILESSERFSIAPLQLILEHELNENAWCNLKCTSTTDMLYASSYALPDAKWVVALRLHVAACDRTTAVSLLKELLLVLVSDDD******GEVNLAIEALIPKGKAKKALWARGRDMLTYSVNSLKSTNLKFIDAKSPRSSQVVRLQLNKDDTERILLTCKSRGIKLCGMLAAAGLIAAHNSDNQRKYAVATLTDCRSILEPPLSNHRFGFYHSAIMNTHLIKSGEKLGDLAKKIYTAFVNSKHCNRHFSDMADLNFLMCKAIENPSLTPASSLRSSFIYQLKNDIG********
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MYQSLVEMMMEPKGGRIASGTEYSWCRAVPGGTGIAVLAILTSKVPETSGLQDALNKLQSYHPILRSRLHTNPSKNTFSFVTSPTTFIQVKSFNLSSTSKILESSERFSIAPLQLILEHELNENAWCNLKCTSTTDMLYASSYALPDAKWVVALRLHVAACDRTTAVSLLKELLLVLVSDDDQEQEGRGEVNLAIEALIPKGKAKKALWARGRDMLTYSVNSLKSTNLKFIDAKSPRSSQVVRLQLNKDDTERILLTCKSRGIKLCGMLAAAGLIAAHNSDNQRKYAVATLTDCRSILEPPLSNHRFGFYHSAIMNTHLIKSGEKLGDLAKKIYTAFVNSKHCNRHFSDMADLNFLMCKAIENPSLTPASSLRSSFIYQLKNDIGNPNLSSQP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query393
224138458475 predicted protein [Populus trichocarpa] 0.931 0.770 0.646 1e-139
225440843477 PREDICTED: uncharacterized protein LOC10 0.951 0.784 0.610 1e-128
440583673466 hypothetical protein [Lupinus angustifol 0.903 0.761 0.559 1e-107
357511121460 hypothetical protein MTR_7g104960 [Medic 0.931 0.795 0.557 1e-106
356537114441 PREDICTED: uncharacterized protein LOC10 0.916 0.816 0.556 1e-105
147774807465 hypothetical protein VITISV_014691 [Viti 0.923 0.780 0.554 1e-104
225440845465 PREDICTED: uncharacterized protein LOC10 0.923 0.780 0.552 1e-103
224088529478 predicted protein [Populus trichocarpa] 0.946 0.778 0.520 1e-103
356498748447 PREDICTED: uncharacterized protein LOC10 0.916 0.805 0.542 1e-100
449462996463 PREDICTED: uncharacterized protein LOC10 0.938 0.796 0.493 4e-99
>gi|224138458|ref|XP_002322819.1| predicted protein [Populus trichocarpa] gi|222867449|gb|EEF04580.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 249/385 (64%), Positives = 305/385 (79%), Gaps = 19/385 (4%)

Query: 10  MEPKGGRIASGTEYSWCRAVPGGTGIAVLAILTSKVPETSGLQDALNKLQSYHPILRSRL 69
           +EPKG R   GTE+SWCRAVPGGTGIAVLAILTSK+P  SGL++AL+KLQ+ HPILRSRL
Sbjct: 12  VEPKG-RAVGGTEHSWCRAVPGGTGIAVLAILTSKLPRNSGLENALHKLQNSHPILRSRL 70

Query: 70  HTNPSKNTFSFVTSPTTFIQVKSFNLSSTSKILES---SERFSIAPLQLILEHELNENAW 126
           H+  + NTFSF+TSPT FI++K+FNLSST KILE+    +  S++PL L+LEHELN+N+W
Sbjct: 71  HSGSNTNTFSFITSPTPFIKLKAFNLSSTFKILENPLKPKNQSLSPLHLVLEHELNQNSW 130

Query: 127 CNLK-----CTSTTDMLYASSYALPDAKWVVALRLHVAACDRTTAVSLLKELLLVLVSDD 181
            N            DM +A++YALP+ KWV+ LRLH +ACDRTTAVSLL+E L+VLVS++
Sbjct: 131 YNHNKAPSFINDIQDMFFATTYALPNEKWVLVLRLHASACDRTTAVSLLQE-LVVLVSEE 189

Query: 182 D-----QEQEGRGEVNLAIEALIPKGKAKKALWARGRDMLTYSVNSLKSTNLKFIDAKSP 236
           +     +E     EV  +IE L+P  KAKK LW RG DML YSVNSL+ TNLKF D+KSP
Sbjct: 190 EKGALQKEIANEEEVTSSIEDLVPNKKAKKGLWERGIDMLGYSVNSLRLTNLKFKDSKSP 249

Query: 237 RSSQVVRLQLNKDDTERILLTCKSRGIKLCGMLAAAGLIAAHNS----DNQRKYAVATLT 292
           RSSQVVRLQ+N+ DTE+I+  C+SRGIKLCG LA+AGLIAAH S    D QRKYAV TLT
Sbjct: 250 RSSQVVRLQMNQKDTEKIIAGCRSRGIKLCGALASAGLIAAHKSKSRVDKQRKYAVVTLT 309

Query: 293 DCRSILEPPLSNHRFGFYHSAIMNTHLIKSGEKLGDLAKKIYTAFVNSKHCNRHFSDMAD 352
           DCRS+L+P LSNH FGFYHSAI+N H++K GEKL +LA+K Y AF + K+CNRHFSDMAD
Sbjct: 310 DCRSVLDPTLSNHHFGFYHSAILNAHVMKGGEKLWELAQKTYAAFASYKNCNRHFSDMAD 369

Query: 353 LNFLMCKAIENPSLTPASSLRSSFI 377
           LNFLMCKAI+NP LTP+SSLR++ +
Sbjct: 370 LNFLMCKAIDNPGLTPSSSLRTALV 394

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225440843|ref|XP_002276376.1| PREDICTED: uncharacterized protein LOC100263016 [Vitis vinifera] Back     alignment and taxonomy information
>gi|440583673|emb|CCH47179.1| hypothetical protein [Lupinus angustifolius] Back     alignment and taxonomy information
>gi|357511121|ref|XP_003625849.1| hypothetical protein MTR_7g104960 [Medicago truncatula] gi|87240822|gb|ABD32680.1| hypothetical protein MtrDRAFT_AC150442g12v2 [Medicago truncatula] gi|355500864|gb|AES82067.1| hypothetical protein MTR_7g104960 [Medicago truncatula] Back     alignment and taxonomy information
>gi|356537114|ref|XP_003537075.1| PREDICTED: uncharacterized protein LOC100791257 [Glycine max] Back     alignment and taxonomy information
>gi|147774807|emb|CAN71367.1| hypothetical protein VITISV_014691 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225440845|ref|XP_002276400.1| PREDICTED: uncharacterized protein LOC100257880 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224088529|ref|XP_002308465.1| predicted protein [Populus trichocarpa] gi|222854441|gb|EEE91988.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356498748|ref|XP_003518211.1| PREDICTED: uncharacterized protein LOC100781279 [Glycine max] Back     alignment and taxonomy information
>gi|449462996|ref|XP_004149220.1| PREDICTED: uncharacterized protein LOC101208663 [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query393
TAIR|locus:2083183475 AT3G52610 "AT3G52610" [Arabido 0.788 0.652 0.426 4.8e-62
TAIR|locus:2083183 AT3G52610 "AT3G52610" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 634 (228.2 bits), Expect = 4.8e-62, P = 4.8e-62
 Identities = 139/326 (42%), Positives = 203/326 (62%)

Query:    68 RLHTNPSKNTFSFVTSPTTFIQVKSFNLSSTSKILESSERFSIAPLQLILEHELNENAWC 127
             R   + +  +F   ++  + +++  F+  ST++I+  S+     P ++ILEHE+N+N W 
Sbjct:    67 RFDASANSFSFVVTSAADSHVEIHPFDSVSTAQIIRDSDDPCADPHRIILEHEMNKNTWI 126

Query:   128 NLK--CTSTTDMLYASSYALPD--AKWVVALRLHVAACDRTTAXXXXXXXXXXXXXXXX- 182
             N      S + +   S Y L D   + ++  RL+ AA DRT A                 
Sbjct:   127 NPHRWIKSESRVFIVSLYDLTDDGEQRILTFRLNTAAVDRTAAVTLLREFMKETAADGFG 186

Query:   183 -----XXXEGRGEVNLAIEALIPKGKAKKALWARGRDMLTYSVNSLKSTNLKFIDAK-SP 236
                     E    +  AIE LIP GK  K  WARG D+L YS+N+ + +NL F+DA+ S 
Sbjct:   187 NGPVVAATETAVGLGKAIEELIPSGKGDKPFWARGIDVLGYSLNAFRFSNLNFVDAENSN 246

Query:   237 RSSQVVRLQLNKDDTERILLTCKSRGIKLCGMLAAAGLIAAHNSDNQ-----RKYAVATL 291
             R SQ+VRL+L++D T +++  CK+RG+KL   LA++ LIAA++S N       KYAV TL
Sbjct:   247 RRSQLVRLKLDRDQTLKLVAGCKARGLKLWAALASSALIAAYSSKNLPPYQGEKYAVVTL 306

Query:   292 TDCRSILEPPLSNHRFGFYHSAIMNTHLIKSGEKLGDLAKKIYTAFVNSKHCNRHFSDMA 351
             +DCRSILEPPL+++ FGFYH+ I++TH +   EKL DLAK+ Y +F +SK+ N+ F+DM+
Sbjct:   307 SDCRSILEPPLTSNDFGFYHAGILHTHDLTGEEKLWDLAKRCYDSFTSSKNSNKQFTDMS 366

Query:   352 DLNFLMCKAIENPSLTPASSLRSSFI 377
             DLNFLMCKAIENP+LTP+SSLR++FI
Sbjct:   367 DLNFLMCKAIENPNLTPSSSLRTAFI 392
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 393
PRK12467 3956 peptide synthase; Provisional 100.0
PRK12467 3956 peptide synthase; Provisional 100.0
PRK10252 1296 entF enterobactin synthase subunit F; Provisional 99.97
PF00668301 Condensation: Condensation domain; InterPro: IPR00 99.97
PRK12316 5163 peptide synthase; Provisional 99.97
PRK05691 4334 peptide synthase; Validated 99.97
PRK05691 4334 peptide synthase; Validated 99.97
PRK12316 5163 peptide synthase; Provisional 99.97
PRK09294416 acyltransferase PapA5; Provisional 99.97
PF07247480 AATase: Alcohol acetyltransferase; InterPro: IPR01 99.97
TIGR02946446 acyl_WS_DGAT acyltransferase, WS/DGAT/MGAT. This b 99.95
COG4908439 Uncharacterized protein containing a NRPS condensa 99.8
PF03007263 WES_acyltransf: Wax ester synthase-like Acyl-CoA a 99.38
PLN02481436 Omega-hydroxypalmitate O-feruloyl transferase 98.95
PLN02663431 hydroxycinnamoyl-CoA:shikimate/quinate hydroxycinn 98.93
PF02458432 Transferase: Transferase family; InterPro: IPR0034 98.9
PLN03157447 spermidine hydroxycinnamoyl transferase; Provision 98.83
PF07428413 Tri3: 15-O-acetyltransferase Tri3; InterPro: IPR00 98.82
TIGR03443 1389 alpha_am_amid L-aminoadipate-semialdehyde dehydrog 98.65
PLN00140444 alcohol acetyltransferase family protein; Provisio 98.63
COG1020 642 EntF Non-ribosomal peptide synthetase modules and 98.55
COG4845219 Chloramphenicol O-acetyltransferase [Defense mecha 93.87
PF0140239 RHH_1: Ribbon-helix-helix protein, copG family; In 93.55
PHA0162356 hypothetical protein 89.55
PF0386950 Arc: Arc-like DNA binding domain; InterPro: IPR005 89.08
PF00302206 CAT: Chloramphenicol acetyltransferase; InterPro: 87.24
PF0553451 HicB: HicB family; InterPro: IPR008651 This family 86.75
PHA0151382 mnt Mnt 86.22
PRK13757219 chloramphenicol acetyltransferase; Provisional 85.5
PRK11855547 dihydrolipoamide acetyltransferase; Reviewed 84.95
PF1265144 RHH_3: Ribbon-helix-helix domain 83.38
PRK1167590 LexA regulated protein; Provisional 82.42
PHA0174860 hypothetical protein 81.78
>PRK12467 peptide synthase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=6e-31  Score=310.14  Aligned_cols=308  Identities=13%  Similarity=0.128  Sum_probs=227.3

Q ss_pred             ccCcccc-cchhhc---ccCCcceeEEEEEEcCCCChHHHHHHHHHHHhhcccccceeccCCCCCceEeeCCCCcceeee
Q 047915           16 RIASGTE-YSWCRA---VPGGTGIAVLAILTSKVPETSGLQDALNKLQSYHPILRSRLHTNPSKNTFSFVTSPTTFIQVK   91 (393)
Q Consensus        16 R~l~~~E-~~~~~~---~~~~~~~~~~~~~l~g~ld~~~L~~A~~~l~~rhp~LR~~~~~~~~~~~~~~~~~~~~~i~~~   91 (393)
                      -+|++.- .+|+..   .....||+...++++|.+|.++|++||+.+++|||+|||+|...++++.+++....  ...+.
T Consensus        50 ~pLS~~Q~~lw~~~~~~~~~~~Yni~~~~~l~g~lD~~~L~~A~~~vv~rH~~LRt~f~~~~~~~~q~v~~~~--~~~i~  127 (3956)
T PRK12467         50 IPLSYAQERQWFLWQLDPDSAAYNIPTALRLRGELDVSALRRAFDALVARHESLRTRFVQDEEGFRQVIDASL--SLTIP  127 (3956)
T ss_pred             CCCCHHHHHHHHHHHhCCCCCceeccEEEEEeCCCCHHHHHHHHHHHHHHhhhheEEEEecCCeEEEEEcCCC--CCcee
Confidence            3566664 445533   33457999999999999999999999999999999999999987766666654432  23333


Q ss_pred             ecccCccccccccccccchhHHHHHHHHhhcccccccccCCCCCCceEEEEEEcCCCceEEEEEeccccchHhhHHHHHH
Q 047915           92 SFNLSSTSKILESSERFSIAPLQLILEHELNENAWCNLKCTSTTDMLYASSYALPDAKWVVALRLHVAACDRTTAVSLLK  171 (393)
Q Consensus        92 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~pl~r~~l~~~~~~~~~l~l~~hH~i~DG~S~~~~~~  171 (393)
                      ..+++.      .++......+.+.+.++... ||++    .++|++|+.+++++++++.+++.+||+++||||+..|++
T Consensus       128 ~~d~~~------~~~~~~~~~~~~~~~~~~~~-~fdL----~~~pl~r~~l~~~~~~~~~l~l~~HHii~DG~S~~~l~~  196 (3956)
T PRK12467        128 LDDLAN------EQGRARESQIEAYINEEVAR-PFDL----ANGPLLRVRLLRLADDEHVLVVTLHHIISDGWSMRVLVE  196 (3956)
T ss_pred             EEeccc------CChhhHHHHHHHHHHHHhcC-CCCC----CCCCceEEEEEEECCCcEEEEEecCeeeEccchHHHHHH
Confidence            333211      01111133445566677777 9998    699999999999888899999999999999999999999


Q ss_pred             HHHHHHhcCCCccccccCCCChhHHhhc-------CC--CcchhHHHHhhhhhhhcccccccccccCCcCC--C-CCCcc
Q 047915          172 ELLLVLVSDDDQEQEGRGEVNLAIEALI-------PK--GKAKKALWARGRDMLTYSVNSLKSTNLKFIDA--K-SPRSS  239 (393)
Q Consensus       172 ~l~~~y~~~~~~~~~~~~~~~~~~~~~~-------~~--~~~~~~~w~~~~~~~~~~~~~~~~~~lp~~~~--~-~~~~~  239 (393)
                      +|.++|.+..........+.+.++.++.       ..  ......||++.+...      .++..+|...+  . .....
T Consensus       197 el~~~Y~~~~~g~~~~~~~~~~~y~dy~~~~~~~l~~~~~~~~~~yW~~~L~~~------~~~~~lp~~~~~~~~~~~~~  270 (3956)
T PRK12467        197 ELVQLYSAYSQGREPSLPALPIQYADYAIWQRSWLEAGERERQLAYWQEQLGGE------HTVLELPTDRPRPAVPSYRG  270 (3956)
T ss_pred             HHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhcChhhHHHHHHHHHHhccC------CCcCCCCCCCCCCCCCCcCc
Confidence            9999995321111000001111222211       11  122457888876432      12223443321  1 12233


Q ss_pred             cEEEEEeCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCceEEEeeccccccCCCCCCCCceeeEeeeccceee
Q 047915          240 QVVRLQLNKDDTERILLTCKSRGIKLCGMLAAAGLIAAHNSDNQRKYAVATLTDCRSILEPPLSNHRFGFYHSAIMNTHL  319 (393)
Q Consensus       240 ~~~~~~l~~~~t~~l~~~ck~~gvT~~~~l~Aa~~~al~~~~g~~~~~i~~pv~~R~~~~~~~~~~~~G~~~~~~~~~~~  319 (393)
                      ......++++.+++|.++||++|+|++++++|||+.++++++|++++.+|+|+++|....  . ..++|+|+|++|++++
T Consensus       271 ~~~~~~l~~~~~~~L~~~a~~~g~T~~~vl~aA~a~lL~r~tg~~dv~iG~pvsgR~~~~--~-~~~iG~fiNtlplrv~  347 (3956)
T PRK12467        271 ARLRVDLPQALSAGLKALAQREGVTLFMVLLASFQTLLHRYSGQSDIRIGVPNANRNRVE--T-ERLIGFFVNTQVLKAE  347 (3956)
T ss_pred             eeEEEeCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCCEEEEeccCCCCchh--h-hcceeeeeeeeeeEee
Confidence            456788999999999999999999999999999999999999999999999999997532  3 5799999999999999


Q ss_pred             CCCCCcHHHHHHHHHHHHHhhhccCC
Q 047915          320 IKSGEKLGDLAKKIYTAFVNSKHCNR  345 (393)
Q Consensus       320 v~~~~~f~~la~~v~~~~~~~~~~~~  345 (393)
                      ++++.+|.++++++++++.++++|++
T Consensus       348 ~~~~~t~~~ll~~v~~~~~~a~~hq~  373 (3956)
T PRK12467        348 VDPQASFLELLQQVKRTALGAQAHQD  373 (3956)
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHhccc
Confidence            99999999999999999999999976

>PRK12467 peptide synthase; Provisional Back     alignment and domain information
>PRK10252 entF enterobactin synthase subunit F; Provisional Back     alignment and domain information
>PF00668 Condensation: Condensation domain; InterPro: IPR001242 This domain is found in many multi-domain enzymes which synthesize peptide antibiotics Back     alignment and domain information
>PRK12316 peptide synthase; Provisional Back     alignment and domain information
>PRK05691 peptide synthase; Validated Back     alignment and domain information
>PRK05691 peptide synthase; Validated Back     alignment and domain information
>PRK12316 peptide synthase; Provisional Back     alignment and domain information
>PRK09294 acyltransferase PapA5; Provisional Back     alignment and domain information
>PF07247 AATase: Alcohol acetyltransferase; InterPro: IPR010828 This family contains a number of alcohol acetyltransferase (2 Back     alignment and domain information
>TIGR02946 acyl_WS_DGAT acyltransferase, WS/DGAT/MGAT Back     alignment and domain information
>COG4908 Uncharacterized protein containing a NRPS condensation (elongation) domain [General function prediction only] Back     alignment and domain information
>PF03007 WES_acyltransf: Wax ester synthase-like Acyl-CoA acyltransferase domain; InterPro: IPR004255 This entry represents the N terminus (approximately 170 residues) of a number of hypothetical plant proteins Back     alignment and domain information
>PLN02481 Omega-hydroxypalmitate O-feruloyl transferase Back     alignment and domain information
>PLN02663 hydroxycinnamoyl-CoA:shikimate/quinate hydroxycinnamoyltransferase Back     alignment and domain information
>PF02458 Transferase: Transferase family; InterPro: IPR003480 This family includes a number of transferase enzymes Back     alignment and domain information
>PLN03157 spermidine hydroxycinnamoyl transferase; Provisional Back     alignment and domain information
>PF07428 Tri3: 15-O-acetyltransferase Tri3; InterPro: IPR009992 This family represents a conserved region approximately 400 residues long within 15-O-acetyltransferase (Tri3), which seems to be restricted to ascomycete fungi Back     alignment and domain information
>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase Back     alignment and domain information
>PLN00140 alcohol acetyltransferase family protein; Provisional Back     alignment and domain information
>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>COG4845 Chloramphenicol O-acetyltransferase [Defense mechanisms] Back     alignment and domain information
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number Back     alignment and domain information
>PHA01623 hypothetical protein Back     alignment and domain information
>PF03869 Arc: Arc-like DNA binding domain; InterPro: IPR005569 Arc repressor act by the cooperative binding of two Arc repressor dimers to a 21-base-pair operator site Back     alignment and domain information
>PF00302 CAT: Chloramphenicol acetyltransferase; InterPro: IPR001707 Chloramphenicol acetyltransferase (CAT) (2 Back     alignment and domain information
>PF05534 HicB: HicB family; InterPro: IPR008651 This family consists of several bacterial HicB related proteins Back     alignment and domain information
>PHA01513 mnt Mnt Back     alignment and domain information
>PRK13757 chloramphenicol acetyltransferase; Provisional Back     alignment and domain information
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed Back     alignment and domain information
>PF12651 RHH_3: Ribbon-helix-helix domain Back     alignment and domain information
>PRK11675 LexA regulated protein; Provisional Back     alignment and domain information
>PHA01748 hypothetical protein Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query393
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-04
3fot_A519 15-O-acetyltransferase; fusarium head blight, tric 4e-09
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 64.1 bits (155), Expect = 4e-11
 Identities = 68/414 (16%), Positives = 130/414 (31%), Gaps = 105/414 (25%)

Query: 31  GGTGIAVLAILTSKVPETSGLQDALN---------KLQSYHPILR--SRLHTNPSKNTFS 79
            G+G   +A+       +  +Q  ++            S   +L    +L      N  S
Sbjct: 159 LGSGKTWVALDVCL---SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215

Query: 80  FVTSPTTFIQVKSFNLSSTSKILESSERFSIAPLQLILEHELNENAWC--NLKC------ 131
                +  I+++  ++ +  + L  S+ +    L L+L +  N  AW   NL C      
Sbjct: 216 RSDHSSN-IKLRIHSIQAELRRLLKSKPYENC-L-LVLLNVQNAKAWNAFNLSCKILLTT 272

Query: 132 --TSTTDMLYASSYALPDAKWVVALRLHVAACDRTTAVSLLKELLLVLVSDDDQEQEGRG 189
                TD L A++         ++L  H          SLL + L     D  +E     
Sbjct: 273 RFKQVTDFLSAATTT------HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT-- 324

Query: 190 EVN-LAIEALIPKG-KAKKALWARGRDMLTY--------SVNSLKSTNLK------FI-- 231
             N   + ++I +  +   A W   + +           S+N L+    +       +  
Sbjct: 325 -TNPRRL-SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP 382

Query: 232 -DAKSPRSSQVVRL---QLNKDDTERILLTCKSR---------------GIKLCGMLAAA 272
             A  P  + ++ L    + K D   ++                      I L   +   
Sbjct: 383 PSAHIP--TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLE 440

Query: 273 GLIAAHNS--DNQRKYAVATLTDCRSILEPPLSNHRFGF--YHSAIMNTHLIKSGEKLGD 328
              A H S  D    Y +    D   ++ P L  + +    +H   +    I+  E++  
Sbjct: 441 NEYALHRSIVD---HYNIPKTFDSDDLIPPYLDQYFYSHIGHH---LKN--IEHPERM-T 491

Query: 329 LAKKIYTAFVNSKHCNRHFSDMADLNFLMCKAIENPSLTPASSLRSSFIYQLKN 382
           L + ++                 D  FL  K   + +   AS    + + QLK 
Sbjct: 492 LFRMVFL----------------DFRFLEQKIRHDSTAWNASGSILNTLQQLKF 529
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3fot_A 15-O-acetyltransferase; fusarium head blight, trichothecene mycotoxin, deoxynivaleno toxin, fusarium graminearum, coenzyme A; 1.75A {Fusarium sporotrichioides} PDB: 3fp0_A* Length = 519 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query393
2jgp_A520 Tyrocidine synthetase 3; multifunctional enzyme, a 100.0
1l5a_A436 Amide synthase, VIBH; nonribosomal peptide synthet 100.0
4hvm_A 493 Tlmii; PSI-biology, midwest center for structural 100.0
2vsq_A 1304 Surfactin synthetase subunit 3; ligase, peptidyl c 100.0
2xhg_A466 Tyrocidine synthetase A; isomerase, nonribosomal p 100.0
1q9j_A422 PAPA5, polyketide synthase associated protein 5; c 100.0
3fot_A519 15-O-acetyltransferase; fusarium head blight, tric 99.83
2xr7_A453 Malonyltransferase; xenobiotics, naphthols; HET: M 99.05
4g22_A439 Hydroxycinnamoyl-COA shikimate/quinate hydroxycinn 99.01
2e1v_A454 Acyl transferase; BAHD superfamily, seleno-methion 98.99
2bgh_A421 Vinorine synthase; VS, BAHD, acetyltransferase, au 98.94
2rkv_A451 Trichothecene 3-O-acetyltransferase; BAHD superfam 98.44
2k9i_A55 Plasmid PRN1, complete sequence; plasmid COPY cont 92.89
3qoq_A69 Alginate and motility regulator Z; protein-DNA com 92.03
1baz_A53 ARC repressor; transcription regulation; 1.90A {En 91.48
2ba3_A51 NIKA; dimer, bacterial conjugation, relaxase, DNA 90.35
2cpg_A45 REPA protein, transcriptional repressor COPG; DNA- 89.61
1p94_A76 Plasmid partition protein PArg; ribbon-helix-helix 88.26
3l60_A250 Branched-chain alpha-keto acid dehydrogenase; stru 87.26
2kel_A56 SVTR protein, uncharacterized protein 56B; homodim 85.56
1u9p_A120 PARC; unknown function; 1.90A {Escherichia coli} S 85.11
1nla_A64 Transcriptional repressor ARC; 3(10) helix, beta-r 84.87
2gpe_A52 Bifunctional protein PUTA; ribbon-helix-helix, DNA 84.63
2ay0_A58 Bifunctional PUTA protein; ribbon-helix-helix, DNA 81.31
>2jgp_A Tyrocidine synthetase 3; multifunctional enzyme, antibiotic biosynthesis, condensatio domain, peptide bond formation, ligase; 1.85A {Brevibacillus brevis} Back     alignment and structure
Probab=100.00  E-value=1.3e-35  Score=295.48  Aligned_cols=296  Identities=13%  Similarity=0.106  Sum_probs=223.3

Q ss_pred             CCccCcccccc-hhhc---ccCCcceeEEEEEEcCCCChHHHHHHHHHHHhhcccccceeccCCCCCceEeeCCCCccee
Q 047915           14 GGRIASGTEYS-WCRA---VPGGTGIAVLAILTSKVPETSGLQDALNKLQSYHPILRSRLHTNPSKNTFSFVTSPTTFIQ   89 (393)
Q Consensus        14 ~~R~l~~~E~~-~~~~---~~~~~~~~~~~~~l~g~ld~~~L~~A~~~l~~rhp~LR~~~~~~~~~~~~~~~~~~~~~i~   89 (393)
                      ...+|++.... |+..   .....||....++++|.+|.++|++||+.+++|||+||++|...++++.+++....  .++
T Consensus        95 ~~~pls~~Q~~~~~~~~~~~~~~~y~~~~~~~l~g~ld~~~l~~A~~~lv~rh~~LRt~f~~~~~~~~q~v~~~~--~~~  172 (520)
T 2jgp_A           95 AYYPVSSAQKRMYILDQFEGVGISYNMPSTMLIEGKLERTRVEAAFQRLIARHESLRTSFAVVNGEPVQNIHEDV--PFA  172 (520)
T ss_dssp             SSEECCHHHHHHHHHHHHTCCTTTTBCCEEEEEEECCCHHHHHHHHHHHHHHCGGGGEEEEEETTEEEEEECSCC--CCC
T ss_pred             CCCCCCHHHHHHHHHHhcCCCCCcccceEEEEECCCCCHHHHHHHHHHHHHHhHhheeEEEeeCCEEEEEECCCC--CCc
Confidence            44577777654 4432   33457899999999999999999999999999999999999877666666654432  333


Q ss_pred             eeecccCccccccccccccchhHHHHHHHHhhcccccccccCCCCCCceEEEEEEcCCCceEEEEEeccccchHhhHHHH
Q 047915           90 VKSFNLSSTSKILESSERFSIAPLQLILEHELNENAWCNLKCTSTTDMLYASSYALPDAKWVVALRLHVAACDRTTAVSL  169 (393)
Q Consensus        90 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~pl~r~~l~~~~~~~~~l~l~~hH~i~DG~S~~~~  169 (393)
                      +...+++             .+++.+ +.++..+ ||++    .++|++|+.+++.+++++.|++.+||+++||||+.+|
T Consensus       173 ~~~~~~~-------------~~~~~~-~~~~~~~-~fdl----~~~pl~r~~l~~~~~~~~~l~~~~HH~i~Dg~S~~~l  233 (520)
T 2jgp_A          173 LAYSEVT-------------EEEARE-LVSSLVQ-PFDL----EVAPLIRVSLLKIGEDRYVLFTDMHHSISDGVSSGIL  233 (520)
T ss_dssp             CEEEECC-------------HHHHHH-HHHHTCC-CCCT----TSSCCEEEEEEEEETTEEEEEEEEBGGGCCHHHHHHH
T ss_pred             eEEEeCC-------------HHHHHH-HHHHhcC-CCCC----CCCcceeEEEEEEcCCcEEEEEEccceeecHhHHHHH
Confidence            4333311             223333 4556666 8998    6899999999998888899999999999999999999


Q ss_pred             HHHHHHHHhcCCCccccccCCCChhHHhhc------CCC---cchhHHHHhhhhhhhcccccccccccCCcCC--C-CCC
Q 047915          170 LKELLLVLVSDDDQEQEGRGEVNLAIEALI------PKG---KAKKALWARGRDMLTYSVNSLKSTNLKFIDA--K-SPR  237 (393)
Q Consensus       170 ~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~------~~~---~~~~~~w~~~~~~~~~~~~~~~~~~lp~~~~--~-~~~  237 (393)
                      +++|..+|.+.....      .+.++.++.      ...   ...+.||.+.+...      .+...+|...+  . ...
T Consensus       234 ~~el~~~Y~~~~l~~------~~~~~~d~~~~~~~~~~~~~~~~~~~yW~~~l~~~------~~~~~lp~~~~~~~~~~~  301 (520)
T 2jgp_A          234 LAEWVQLYQGDVLPE------LRIQYKDFAVWQQEFSQSAAFHKQEAYWLQTFADD------IPVLNLPTDFTRPSTQSF  301 (520)
T ss_dssp             HHHHHHHHTTCCCCC------CSCCHHHHHHHHHHHTTSHHHHHHHHHHHHHTSSC------CCCCCCCCSSCCCSSCCC
T ss_pred             HHHHHHHHccCCCCC------CCCCHHHHHHHHHHhhcChhhHHHHHHHHHHhCCC------CCcCCCCCCCCCCCCCCC
Confidence            999999995432111      111222211      111   12457887765321      11223443321  1 122


Q ss_pred             cccEEEEEeCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCceEEEeeccccccCCCCCCCCceeeEeeeccce
Q 047915          238 SSQVVRLQLNKDDTERILLTCKSRGIKLCGMLAAAGLIAAHNSDNQRKYAVATLTDCRSILEPPLSNHRFGFYHSAIMNT  317 (393)
Q Consensus       238 ~~~~~~~~l~~~~t~~l~~~ck~~gvT~~~~l~Aa~~~al~~~~g~~~~~i~~pv~~R~~~~~~~~~~~~G~~~~~~~~~  317 (393)
                      ......+.++.+.+.+|.+.||++|+|++++++|||+.++++++|++++.+|+|+++|...  .. ..++|+|+|++|++
T Consensus       302 ~~~~~~~~l~~~~~~~l~~~a~~~~~T~~~~l~aa~a~~L~~~~~~~dv~~g~~~~gR~~~--~~-~~~vG~f~n~lplr  378 (520)
T 2jgp_A          302 AGDQCTIGAGKALTEGLHQLAQATGTTLYMVLLAAYNVLLAKYAGQEDIIVGTPITGRSHA--DL-EPIVGMFVNTLAMR  378 (520)
T ss_dssp             BEEEEEEECCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTCSCEEEEEEECCCCSG--GG-TTCCSCCCEEEEEE
T ss_pred             CccEEEEeCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCeEEEeccCCCCch--hh-hccEEeeeeeeeEE
Confidence            3456678899999999999999999999999999999999999999999999999999863  22 57999999999999


Q ss_pred             eeCCCCCcHHHHHHHHHHHHHhhhccCC
Q 047915          318 HLIKSGEKLGDLAKKIYTAFVNSKHCNR  345 (393)
Q Consensus       318 ~~v~~~~~f~~la~~v~~~~~~~~~~~~  345 (393)
                      ++++++.+|.++++++++++.++++|+.
T Consensus       379 ~~~~~~~~~~~~l~~v~~~~~~~~~h~~  406 (520)
T 2jgp_A          379 NKPQREKTFSEFLQEVKQNALDAYGHQD  406 (520)
T ss_dssp             ECCCTTSBHHHHHHHHHHHHHHHHHTCC
T ss_pred             ecCCCCCCHHHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999976
>1l5a_A Amide synthase, VIBH; nonribosomal peptide synthetase, NRPS condensation domain, vibriobactin, biosynthetic protein; 2.55A {Vibrio cholerae} SCOP: c.43.1.2 c.43.1.2 Back     alignment and structure
>4hvm_A Tlmii; PSI-biology, midwest center for structural genomics, MCSG, N product biosynthesis, natPro; 2.70A {Streptoalloteichus hindustanus} Back     alignment and structure
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Back     alignment and structure
>2xhg_A Tyrocidine synthetase A; isomerase, nonribosomal peptide synthesis, cofactor-independ epimerization; 1.50A {Brevibacillus brevis} Back     alignment and structure
>1q9j_A PAPA5, polyketide synthase associated protein 5; conjugating enzyme PAPA5, structural genomics, PSI protein structure initiative; 2.75A {Mycobacterium tuberculosis} SCOP: c.43.1.2 c.43.1.2 Back     alignment and structure
>3fot_A 15-O-acetyltransferase; fusarium head blight, trichothecene mycotoxin, deoxynivaleno toxin, fusarium graminearum, coenzyme A; 1.75A {Fusarium sporotrichioides} PDB: 3fp0_A* Back     alignment and structure
>2xr7_A Malonyltransferase; xenobiotics, naphthols; HET: MLC; 3.10A {Nicotiana tabacum} Back     alignment and structure
>4g22_A Hydroxycinnamoyl-COA shikimate/quinate hydroxycinnamoyltransferase; BAHD superfamily; 1.70A {Coffea canephora} PDB: 4g2m_A 4g0b_A Back     alignment and structure
>2e1v_A Acyl transferase; BAHD superfamily, seleno-methionine derivative, dendranthema morifolium, DMAT; 1.80A {Chrysanthemum x morifolium} PDB: 2e1u_A 2e1t_A Back     alignment and structure
>2bgh_A Vinorine synthase; VS, BAHD, acetyltransferase, auto-rickshaw, transferase; 2.6A {Rauvolfia serpentina} Back     alignment and structure
>2rkv_A Trichothecene 3-O-acetyltransferase; BAHD superfamily, deoxyniv T-2, acetyl COA, fusarium; HET: COA MPO ZBA; 1.60A {Gibberella zeae} PDB: 3b2s_A* 3b30_A* 2rkt_A* 2zba_A* Back     alignment and structure
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A Back     alignment and structure
>3qoq_A Alginate and motility regulator Z; protein-DNA complex, ribbon-helix-helix; HET: DNA; 3.10A {Pseudomonas aeruginosa} Back     alignment and structure
>1baz_A ARC repressor; transcription regulation; 1.90A {Enterobacteria phage P22} SCOP: a.43.1.1 PDB: 1bdv_A* 1arq_A 1arr_A 1bdt_A* 1par_A* 1myk_A 1qtg_A 1b28_A 1myl_A Back     alignment and structure
>2ba3_A NIKA; dimer, bacterial conjugation, relaxase, DNA binding, ribbon- helix-helix, DNA binding protein; NMR {Plasmid R64} Back     alignment and structure
>2cpg_A REPA protein, transcriptional repressor COPG; DNA-binding protein, plasmid, gene regulation; 1.60A {Streptococcus agalactiae} SCOP: a.43.1.3 PDB: 1b01_A* 1ea4_A* Back     alignment and structure
>1p94_A Plasmid partition protein PArg; ribbon-helix-helix, dimer, DNA binding, cell cycle; NMR {Salmonella enterica} SCOP: a.43.1.3 Back     alignment and structure
>3l60_A Branched-chain alpha-keto acid dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: c.43.1.0 Back     alignment and structure
>2kel_A SVTR protein, uncharacterized protein 56B; homodimer, ribbon-helix-helix, transcription repres; NMR {Sulfolobus islandicus rod-shaped virus} Back     alignment and structure
>1u9p_A PARC; unknown function; 1.90A {Escherichia coli} SCOP: a.43.1.1 Back     alignment and structure
>1nla_A Transcriptional repressor ARC; 3(10) helix, beta-ribbon, beta-sheet, structural switching; NMR {Enterobacteria phage P22} SCOP: a.43.1.1 Back     alignment and structure
>2gpe_A Bifunctional protein PUTA; ribbon-helix-helix, DNA-binding domain, proline catabo proline utilization A, DNA binding protein; 1.90A {Escherichia coli} PDB: 2rbf_A* 2jxg_A 2jxh_A 2jxi_A* Back     alignment and structure
>2ay0_A Bifunctional PUTA protein; ribbon-helix-helix, DNA-binding domain, proline catabo proline utilization A, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.43.1.11 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query393
d1l5aa1174 VibH {Vibrio cholerae [TaxId: 666]} 99.83
d1q9ja1175 Polyketide synthase associated protein 5, PapA5 {M 99.77
d1q9ja2238 Polyketide synthase associated protein 5, PapA5 {M 99.65
d1l5aa2250 VibH {Vibrio cholerae [TaxId: 666]} 99.52
d3claa_213 Chloramphenicol acetyltransferase, CAT {Escherichi 93.13
d3claa_213 Chloramphenicol acetyltransferase, CAT {Escherichi 87.5
d1q23a_214 Chloramphenicol acetyltransferase, CAT {Escherichi 85.98
d1p94a_76 Plasmid partition protein ParG {Salmonella enteric 84.62
d2cpga_43 Transcriptional repressor CopG {Streptococcus agal 80.34
>d1l5aa1 c.43.1.2 (A:1-174) VibH {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: NRPS condensation domain (amide synthase)
domain: VibH
species: Vibrio cholerae [TaxId: 666]

Probab=99.83  E-value=1.8e-20  Score=156.80  Aligned_cols=139  Identities=14%  Similarity=0.075  Sum_probs=105.3

Q ss_pred             ccchhhc---ccCCcceeEEEEEEcCCCChHHHHHHHHHHHhhcccccceeccCCCCCceEeeCCCCcceeeeecccCcc
Q 047915           22 EYSWCRA---VPGGTGIAVLAILTSKVPETSGLQDALNKLQSYHPILRSRLHTNPSKNTFSFVTSPTTFIQVKSFNLSST   98 (393)
Q Consensus        22 E~~~~~~---~~~~~~~~~~~~~l~g~ld~~~L~~A~~~l~~rhp~LR~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   98 (393)
                      +.+|+.-   ++...||+...+++.|++|.++|++||..+++|||+||++|..+++...+.+ .   +.+.+..+.  . 
T Consensus         6 ~~~W~~~~~~p~~~~yni~~~~~i~g~ld~~~l~~A~~~l~~rh~~LRt~f~~~~~~~~~~~-~---~~~~~~~~~--~-   78 (174)
T d1l5aa1           6 KPFWQRHLAYPHINLDTVAHSLRLTGPLDTTLLLRALHLTVSEIDLFRARFSAQGELYWHPF-S---PPIDYQDLS--I-   78 (174)
T ss_dssp             HHHHHHHHHSTTSCCSEEEEEEEEESSCCHHHHHHHHHHHHHTCGGGGEEECTTCCEEECSS-C---CCCEEEECT--T-
T ss_pred             HHHHHHHHcCCCCCeeeccEEEEEcCCCCHHHHHHHHHHHHHhCchheEEEeccCcEEEEEE-e---eceeeEecc--c-
Confidence            3445533   4456799999999999999999999999999999999999998764322211 1   133333321  1 


Q ss_pred             ccccccccccchhHHHHHHHHhhcccccccccCCCCCCceEEEEEEcCCCceEEEEEeccccchHhhHHHHHHHHHHHHh
Q 047915           99 SKILESSERFSIAPLQLILEHELNENAWCNLKCTSTTDMLYASSYALPDAKWVVALRLHVAACDRTTAVSLLKELLLVLV  178 (393)
Q Consensus        99 ~~~i~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~pl~r~~l~~~~~~~~~l~l~~hH~i~DG~S~~~~~~~l~~~y~  178 (393)
                            . ........+.+.++..+ ||++    .++|++|+.+++++++++.+++++||+++||||+..|+++|..+|.
T Consensus        79 ------~-~~~~~~~~~~~~~~~~~-~~dl----~~~pl~r~~l~~~~~~~~~l~~~~hHii~Dg~S~~~l~~el~~~Y~  146 (174)
T d1l5aa1          79 ------H-LEAEPLAWRQIEQDLQR-SSTL----IDAPITSHQVYRLSHSEHLIYTRAHHIVLDGYGMMLFEQRLSQHYQ  146 (174)
T ss_dssp             ------C-TTHHHHHHHHHHHHHTS-CCCC----BTSCSCEEEEEEEETTEEEEEEEEETTTCCHHHHHHHHHHHHHHHH
T ss_pred             ------c-cchHHHHHHHHHHHHhC-Cccc----cCCCcEEEEEEEeCCCceEEeeecccEEEcHhHHHHHHHHHHHHHH
Confidence                  0 11123334445666666 8998    6999999999998889999999999999999999999999999995


Q ss_pred             c
Q 047915          179 S  179 (393)
Q Consensus       179 ~  179 (393)
                      +
T Consensus       147 ~  147 (174)
T d1l5aa1         147 S  147 (174)
T ss_dssp             H
T ss_pred             H
Confidence            3
>d1q9ja1 c.43.1.2 (A:1-175) Polyketide synthase associated protein 5, PapA5 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1q9ja2 c.43.1.2 (A:181-418) Polyketide synthase associated protein 5, PapA5 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1l5aa2 c.43.1.2 (A:175-424) VibH {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d3claa_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d3claa_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1q23a_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1p94a_ a.43.1.3 (A:) Plasmid partition protein ParG {Salmonella enterica [TaxId: 28901]} Back     information, alignment and structure
>d2cpga_ a.43.1.3 (A:) Transcriptional repressor CopG {Streptococcus agalactiae [TaxId: 1311]} Back     information, alignment and structure