Citrus Sinensis ID: 047952

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350----
Protein Sequence
MASNGANQPLLSGFVDSTPQTNNKDAPKRRRLRRCRSAPQTDVAALDINEKDSTHLSESLFGKPRPNFKRVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQEILLVKALHRYQKVGPTDILKEIETNKVRYKCIIMLVLELVLILVGTIFLVVVEKMSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWISSSTMTLAQFFLYVAEFNTEKRQKALVNWVLTRKMTHVDLEAADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFLAQDSQTKS
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEEEEEEEcEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHcccccccccHHHHHHHHHHHcccccHHHHHHHHHHHccccccccccccHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHEEEEEEEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccEcHHHHHHcccccccc
Coil and Loop (DISEMBL)
masnganqpllsgfvdstpqtnnkdapkrrrlrrcrsapqtdvaaldinekdsthlseslfgkprpnfKRVLVYLAAYLGGGSLSFYAVNSqieglktneiLDSIYFCIVTMTtvgygdlvpnSVVSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQEILLVKALHRYqkvgptdilkeietnkVRYKCIIMLVLELVLILVGTIFLVVVEKMSFVDAFYCVCSTittlgygdksfsttggRAFGVVWISSSTMTLAQFFLYVAEFNTEKRQKALVNWVLTRKmthvdleaadidedgvVSAAEFIIYKLKEMGKISQEDIALVMEEFqdldfdqsgtlspsdlflaqdsqtks
Flexible Loop (DISEMBL)
masnganqpllsgfvdstpqtnnkdapkrrrlrrcrsapqtdvaaldinekdsthlseslfgkprpnFKRVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQEILLVKALhryqkvgptdilkeietnkVRYKCIIMLVLELVLILVGTIFLVVVEKMSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWISSSTMTLAQFFLYVAEFNTEKRQKALVNWVLTRKMTHVDleaadidedgvVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSgtlspsdlflaqdsqtks
Low Complexity Region (SEG)
MASNGANQPLLSGFVDSTPQTNNKDAPKRRRLRRCRSAPQTDVAALDINEKDSTHLSESLFGKPRPNFKRVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQEILLVKALHRYQKVGPTDILKEIETNKVRYKCiimlvlelvlilvGTIFLVVVEKMSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWISSSTMTLAQFFLYVAEFNTEKRQKALVNWVLTRKMTHVDLEAADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFLAQDSQTKS
Disordered region (IsUnstruct)
*****************************************************************PNFKRVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQEILLVKALHRYQKVGPTDILKEIETNKVRYKCIIMLVLELVLILVGTIFLVVVEKMSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWISSSTMTLAQFFLYVAEFNTEKRQKALVNWVLTRKMTHVDLEAADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDF*********************
Disordered Region (DISOPRED)
******N***LSGFVD**********************************************KPRPNFKRVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQEILLVKALHRYQKVGPT***KEIETNKVRYKCIIMLVLELVLILVGTIFLVVVEKMSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWISSSTMTLAQFFLYVAEFNTEKRQKALVNWVLTRKMTHVDLE*ADID*DGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSD***********
Disordered Region (DISEMBL)
********PLLSGFVDSTPQ********************TDVAALDINEKDSTHLSESLFGKPRPNFKRVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQEILLVKALHRYQKVGPTDILKEIETNKVRYKCIIMLVLELVLILVGTIFLVVVEKMSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWISSSTMTLAQFFLYVAEFNTEKRQKALVNWVLTRKMTHVDLEAADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFLAQDSQTKS
Disordered Region (DISPRO)
*************************************APQTDVAA******DSTHLSESLFGKPRPNFKRVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQEILLVKALHRYQKVGPTDILKEIETNKVRYKCIIMLVLELVLILVGTIFLVVVEKMSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWISSSTMTLAQFFLYVAEFNTEKRQKALVNWVLTRKMTHVDLEAADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFLA*******
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooRRRRRRRRRRRRRRRRRRRRRRRooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASNGANQPLLSGFVDSTPQTNNKDAPKRRRLRRCRSAPQTDVAALDINEKDSTHLSESLFGKPRPNFKRVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQEILLVKALHRYQKVGPTDILKEIETNKVRYKCIIMLVLELVLILVGTIFLVVVEKMSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWISSSTMTLAQFFLYVAEFNTEKRQKALVNWVLTRKMTHVDLEAADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFLAQDSQTKS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	354	2.2.26 [Sep-21-2011]
Q8LBL1	363	Two-pore potassium channe	yes	no	0.816	0.796	0.650	1e-111
Q850M0	347	Two pore potassium channe	yes	no	0.980	1.0	0.558	1e-101
Q8LIN5	349	Two pore potassium channe	no	no	0.943	0.957	0.523	3e-94
Q69TN4	456	Two pore potassium channe	no	no	0.771	0.598	0.402	3e-55
Q9S6Z8	408	Two-pore potassium channe	no	no	0.909	0.789	0.344	8e-50
Q9SVV6	436	Two-pore potassium channe	no	no	0.867	0.704	0.356	1e-49
Q9FL25	443	Two-pore potassium channe	no	no	0.779	0.623	0.360	5e-44
Q9FWX6	284	Two-pore potassium channe	no	no	0.669	0.834	0.319	7e-33
Q9XFR0	260	Potassium inward rectifie	no	no	0.418	0.569	0.378	2e-21
P40310	691	Outward-rectifier potassi	yes	no	0.497	0.254	0.247	1e-09

>sp|Q8LBL1|TPK1_ARATH Two-pore potassium channel 1 OS=Arabidopsis thaliana GN=TPK1 PE=1 SV=2

 Score =  400 bits (1029), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 188/289 (65%), Positives = 236/289 (81%)

Query: 60  LFGKPRPNFKRVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGD 119
           +F    PN +RV+++LA YL  G+L FY V  QI G KT+ ++D++YFCIVTMTTVGYGD
Sbjct: 68  MFSDLNPNLRRVIMFLALYLTIGTLCFYLVRDQISGHKTSGVVDALYFCIVTMTTVGYGD 127

Query: 120 LVPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQEILLVKALHRYQKVGPTDILKE 179
           LVPNS  S+LL+CAFVF+GM LVG  LS+AADYLV+KQE LLV+A H  Q  GPTDILKE
Sbjct: 128 LVPNSSASRLLACAFVFSGMVLVGHLLSRAADYLVEKQEALLVRAFHLRQSFGPTDILKE 187

Query: 180 IETNKVRYKCIIMLVLELVLILVGTIFLVVVEKMSFVDAFYCVCSTITTLGYGDKSFSTT 239
           + TNK+RYKC    ++ +VL +VGTIFLV+VEKM  + AFYCVCST+TTLGYGDKSF++ 
Sbjct: 188 LHTNKLRYKCYATCLVLVVLFIVGTIFLVMVEKMPVISAFYCVCSTVTTLGYGDKSFNSE 247

Query: 240 GGRAFGVVWISSSTMTLAQFFLYVAEFNTEKRQKALVNWVLTRKMTHVDLEAADIDEDGV 299
            GR F V WI +S++ LAQFFLYVAE NTE +Q+ALV WVLTR++T+ DLEAAD+DEDGV
Sbjct: 248 AGRLFAVFWILTSSICLAQFFLYVAELNTENKQRALVKWVLTRRITNNDLEAADLDEDGV 307

Query: 300 VSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFLAQ 348
           V AAEFI+YKLKEMGKI ++DI+ +M+EF+ LD+D+SGTL+ SD+ LAQ
Sbjct: 308 VGAAEFIVYKLKEMGKIDEKDISGIMDEFEQLDYDESGTLTTSDIVLAQ 356

Voltage-independent, large conductance and potassium-selective tonoplast ion channel. Regulated by cytoplasmic calcium and pH. Does not mediate slow-vacuolar (SV) ionic currents, but essential to establish VK currents. Has some permeability for Rb(+) and NH(4)(+), but none for Na(+), Cs(+) or Li(+). Involved in intracellular K(+) redistribution and/or K(+) retranslocation between different tissues.
Arabidopsis thaliana (taxid: 3702)

>sp|Q850M0|KCO1_ORYSJ Two pore potassium channel a OS=Oryza sativa subsp. japonica GN=TPKA PE=1 SV=1

 Score =  367 bits (943), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 196/351 (55%), Positives = 253/351 (72%), Gaps = 4/351 (1%)

Query: 1   MASNGANQPLLSGFVDSTPQTNNKDAPKRRRLRRCRSAPQTDVAALDINEKDSTHLSESL 60
           M  N   Q LL+   D+      K +    R RRCRS P TD       EK S+  ++ L
Sbjct: 1   MDDNSIQQSLLA---DNPNVLQRKPSEGVNRFRRCRSTPSTD-PLQGPPEKGSSVKAKEL 56

Query: 61  FGKPRPNFKRVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDL 120
           F + RP+F+ V + L  YL  G L+FYAV  +I G +TN +LD++YFC+VTMTTVGYGDL
Sbjct: 57  FKEMRPSFRLVGLLLFIYLLVGVLAFYAVMDEISGKRTNRVLDALYFCVVTMTTVGYGDL 116

Query: 121 VPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQEILLVKALHRYQKVGPTDILKEI 180
           VPN+  +KLL+CAFVF GM +V +F+SK ADYLV+KQE+L  KALH   K G T +L+ I
Sbjct: 117 VPNNDTTKLLACAFVFMGMAVVALFVSKVADYLVEKQEVLFFKALHTNLKGGETKMLRAI 176

Query: 181 ETNKVRYKCIIMLVLELVLILVGTIFLVVVEKMSFVDAFYCVCSTITTLGYGDKSFSTTG 240
           ETN+++YK     +L ++ I+ GT+FL  VEK+S VD+FYCVC+TITTLGYGDKSFS+  
Sbjct: 177 ETNRIKYKFYTNALLLVLSIISGTVFLWKVEKLSLVDSFYCVCATITTLGYGDKSFSSKL 236

Query: 241 GRAFGVVWISSSTMTLAQFFLYVAEFNTEKRQKALVNWVLTRKMTHVDLEAADIDEDGVV 300
           GR F V WI +ST+ +AQFF+Y+AE  TE+RQK L NWVLTRKMT +DLEAAD+D+D  V
Sbjct: 237 GRVFAVFWIITSTIIMAQFFMYLAEIYTERRQKMLANWVLTRKMTKMDLEAADLDDDRQV 296

Query: 301 SAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFLAQDSQ 351
            AAEF++YKLKE+GKI+QE+I+  +EEF+ LD D SGTLSP DL LAQ +Q
Sbjct: 297 GAAEFVVYKLKELGKINQEEISSFLEEFEKLDVDHSGTLSPYDLTLAQSAQ 347

Highly selective inward-rectifying potassium channel that is specifically located in the tonoplast of large vacuoles. Functions independently of the voltage difference across the membrane.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8LIN5|KCO2_ORYSJ Two pore potassium channel b OS=Oryza sativa subsp. japonica GN=TPKB PE=1 SV=1

 Score =  345 bits (885), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 181/346 (52%), Positives = 234/346 (67%), Gaps = 12/346 (3%)

Query: 7   NQPLLSGFVDSTPQTNNKDAPKRRRLRRCRSAPQTDVAALDI-NEKDSTHLSESLF-GKP 64
            QPLL    D  P          RR RRCR+AP ++    D  N   +    ++LF G  
Sbjct: 6   QQPLLHDGGDQKPPPEGA----ARRFRRCRTAPSSEPPPTDKDNSSAADAPPKTLFTGGG 61

Query: 65  RPNFKRVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNS 124
           RP+F+ V + L AYL  G+++FY     + G +T   LD++YFC+VTMTTVGYGDLVP S
Sbjct: 62  RPSFRLVGLLLVAYLLLGTIAFYLAMDHMSGTRTTRALDALYFCVVTMTTVGYGDLVPAS 121

Query: 125 VVSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQEILLVKALHRYQKVGPTDILKEIETNK 184
             +KLL+CAFVF G+ +VG FLSKAADYLV+KQE LL +ALH +  V      + +E NK
Sbjct: 122 DAAKLLACAFVFAGVAVVGTFLSKAADYLVEKQEALLFRALHSHTMV------RAMEMNK 175

Query: 185 VRYKCIIMLVLELVLILVGTIFLVVVEKMSFVDAFYCVCSTITTLGYGDKSFSTTGGRAF 244
           VRYK     +L +  +  GT+ L  VE M  VDAFYCVC+T+TTLGYGD+SFS+ GGRAF
Sbjct: 176 VRYKLYTAGLLLVAAVASGTVVLWKVEGMRAVDAFYCVCATVTTLGYGDRSFSSEGGRAF 235

Query: 245 GVVWISSSTMTLAQFFLYVAEFNTEKRQKALVNWVLTRKMTHVDLEAADIDEDGVVSAAE 304
            V WI+ ST+ +A FFLY AE  TE+RQ+ L  WVL R+ T++DLEAAD+D D  V AA+
Sbjct: 236 AVAWITVSTVVVALFFLYAAELYTERRQRELARWVLRRRTTNMDLEAADLDGDHRVGAAD 295

Query: 305 FIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFLAQDS 350
           F++YKLKE+GKISQEDI+  ++EF +LD D SGTLSP+DL  AQ +
Sbjct: 296 FVLYKLKELGKISQEDISEFLDEFDNLDADHSGTLSPADLAAAQPT 341

Highly selective inward-rectifying potassium channel that is specifically located in the tonoplast of protein storage vacuoles. Functions independently of the voltage difference across the membrane.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q69TN4|KCO3_ORYSJ Two pore potassium channel c OS=Oryza sativa subsp. japonica GN=TPKC PE=3 SV=1

 Score =  215 bits (548), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 113/281 (40%), Positives = 174/281 (61%), Gaps = 8/281 (2%)

Query: 72  LVYLAAYLGGGSLSFYAV---NSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSK 128
            ++L AYL  G ++FYA    N       T+ + D++YFCIVT+ T+GYGD+ P +  +K
Sbjct: 159 FLFLLAYLAMG-VTFYAALPGNFTSSAGPTHPVADALYFCIVTLCTIGYGDITPATPAAK 217

Query: 129 LLSCAFVFTGMGLVGMFLSKAADYLVDKQEILLVKALH--RYQKVGPTDILKEIETNKVR 186
           L S +FV  G G V + LS    Y++D QE LL+ AL   R  +    + + +++  ++R
Sbjct: 218 LFSISFVLIGFGFVDILLSGMVSYVLDLQEHLLITALKNPRSVRKHRHNYIFDLKKGRMR 277

Query: 187 YKCIIMLVLELVLILVGTIFLVV--VEKMSFVDAFYCVCSTITTLGYGDKSFSTTGGRAF 244
            +  + L L +V I VG    V+  VE + ++DA Y    ++TT+GYGD +F T  GR F
Sbjct: 278 VRMKVALALTVVAICVGVGAAVLKRVENLGWLDAVYLAVMSVTTVGYGDHAFRTLAGRLF 337

Query: 245 GVVWISSSTMTLAQFFLYVAEFNTEKRQKALVNWVLTRKMTHVDLEAADIDEDGVVSAAE 304
              W+  ST+ +A+ FLY+AE   +KR +A+ NWVL+R MT  +  AADID +G V+ +E
Sbjct: 338 ASAWLLVSTLAVARAFLYLAEMRIDKRHRAMANWVLSRDMTVSEFLAADIDNNGYVTKSE 397

Query: 305 FIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLF 345
           F++YKLKEMGKIS++DI ++ ++FQ +D    G ++ SDL 
Sbjct: 398 FVVYKLKEMGKISEKDIMMICDQFQRMDSGNCGKITLSDLL 438

Inward-rectifying potassium channel.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9S6Z8|TPK5_ARATH Two-pore potassium channel 5 OS=Arabidopsis thaliana GN=TPK5 PE=1 SV=1

 Score =  197 bits (502), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 119/345 (34%), Positives = 195/345 (56%), Gaps = 23/345 (6%)

Query: 16  DSTPQTNNKDAPKRRRLRRCRSAPQTDVAALDINEKDSTHLSESLFGKPRPNFKRVL--- 72
           DS     N+   + R L R R+AP     A+ I +   T   E+   KP P  K ++   
Sbjct: 68  DSDSDETNRFLSQTRPLHRSRTAP-----AMVIIKDLRTKPPET--KKPSPVSKSIIRQA 120

Query: 73  -VYLAAYLGGGSLSFYAVN-SQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLL 130
              L  YL  G +S Y+ N     G++T+ ++D++YFCIVTM T+GYGD+ P +  +K+ 
Sbjct: 121 IFLLIVYLTLG-VSIYSFNRDHYSGIETHPVVDALYFCIVTMCTIGYGDIAPLTPWTKIF 179

Query: 131 SCAFVFTGMGLVGMFLSKAADYLVDKQEILLVKALH--------RYQKVGPTDILKEIET 182
           +  FV  G G + + LS   +Y++D QE +++  +          + +    D + + E 
Sbjct: 180 AVVFVLFGFGFLDILLSGVVNYVLDLQESMILTGIQTRQHHQHHHHHRFSAKDYIIDFEK 239

Query: 183 NKVRYKCIIMLVLELVLILVGTIFLVV--VEKMSFVDAFYCVCSTITTLGYGDKSFSTTG 240
            ++R +  + L L +V++ +G   LV+  VE++ FVD+ Y    ++TT+GYGD++F T  
Sbjct: 240 GRMRIRMKVCLALCVVVLCIGVGALVLHFVEELGFVDSVYLSVMSVTTVGYGDRAFKTLQ 299

Query: 241 GRAFGVVWISSSTMTLAQFFLYVAEFNTEKRQKALVNWVLTRKMTHVDLEAADIDEDGVV 300
           GR F  VW+  ST+ +A+ FLY+AE   ++R +  V   L R++T  DL  AD  + G +
Sbjct: 300 GRLFAAVWLLVSTLAVARAFLYLAEARIDRRHRKAVKLALNREITVDDLLKADTYQHGFI 359

Query: 301 SAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLF 345
           S +E+I+ KLKEMGKI+Q+DI  V+ +F+ LD +Q G ++  DL 
Sbjct: 360 SKSEYIVLKLKEMGKITQKDIDQVVIQFEKLDPNQIGKITLPDLL 404

Probable voltage-independent potassium-selective tonoplast ion channel.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SVV6|TPK3_ARATH Two-pore potassium channel 3 OS=Arabidopsis thaliana GN=TPK3 PE=2 SV=1

 Score =  197 bits (501), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 114/320 (35%), Positives = 178/320 (55%), Gaps = 13/320 (4%)

Query: 32  LRRCRSAPQTDVA---ALDINEKDSTHLSESLFGKPRPNFKRVLVYLAAYLGGGSLSFYA 88
           L R ++AP   V       I +KD T  S S+        ++    L  YL  G L ++ 
Sbjct: 118 LHRSKTAPAMAVINDLHHPIRQKDPTETSRSVV-------RQAFALLVVYLSLGVLIYWL 170

Query: 89  VNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSK 148
                   +T+ ++D +YFCIVTM T+GYGD+ PNSVV+KL S  FV  G G + + LS 
Sbjct: 171 NRDHYVVNQTHPVVDGLYFCIVTMCTIGYGDITPNSVVTKLFSIMFVLVGFGFIDILLSG 230

Query: 149 AADYLVDKQE-ILLVKALHRYQKVGPTDILKEIETNKVRYKCIIMLVLELVL--ILVGTI 205
              Y++D QE  +L  A  R +       + +++  ++R +  + L L +V+  I VG  
Sbjct: 231 MVSYVLDLQESYMLDSAKRRDEPEKRRSYIIDVKKGRMRIRLKVALALGVVVLCIAVGVG 290

Query: 206 FLVVVEKMSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWISSSTMTLAQFFLYVAE 265
            +  +E++ ++D+FY    ++TT+GYGD++F T  GR F  +W+  ST+ +A+ FLY+AE
Sbjct: 291 IMHFIEEIGWLDSFYLSVMSVTTVGYGDRAFKTLPGRLFAAIWLLVSTLAVARAFLYLAE 350

Query: 266 FNTEKRQKALVNWVLTRKMTHVDLEAADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVM 325
              +KR +     VL   M+     AADID +G VS AE++IYKLKEM KI+ +DI  + 
Sbjct: 351 ARVDKRNRERAKKVLCETMSVSQFFAADIDNNGCVSKAEYVIYKLKEMEKITDKDILPIS 410

Query: 326 EEFQDLDFDQSGTLSPSDLF 345
           ++F  LD   +G ++  DL 
Sbjct: 411 KQFDKLDRCSNGKITLLDLL 430

Probable voltage-independent potassium-selective tonoplast ion channel.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL25|TPK2_ARATH Two-pore potassium channel 2 OS=Arabidopsis thaliana GN=TPK2 PE=2 SV=1

 Score =  178 bits (452), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 103/286 (36%), Positives = 168/286 (58%), Gaps = 10/286 (3%)

Query: 75  LAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAF 134
           L  YL  G L ++         +T+ ++D++YFCIVTM T+GYGD+ P+SVV+KL S  F
Sbjct: 153 LVVYLSLGVLIYWLNRDSYNVKQTHPVVDALYFCIVTMCTIGYGDITPDSVVTKLFSIFF 212

Query: 135 VFTGMGLVGMFLSKAADYLVDKQE-ILLVKALHRYQKVGPTDILK----EIETNKVRYKC 189
           V  G G + + LS    Y++D QE  +L  A +    +   D ++    +++  ++R + 
Sbjct: 213 VLVGFGFMDILLSGMVTYVLDLQENYMLETARNESLNLNDRDKVRSYIIDVKKGRMRIRL 272

Query: 190 IIMLVLELVLILVGTIFLVV--VEKMSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVV 247
            + L L +V++ +G   L++  VEK+ ++D+FY    ++TT+GYGD++F+T  GR    +
Sbjct: 273 KVGLALGVVVLCLGFGVLIMHFVEKIGWLDSFYFSVMSVTTVGYGDRAFNTLAGRLLAAM 332

Query: 248 WISSSTMTLAQFFLYVAEFNTEKRQKALVNWVLTRKMTHVDLEAADIDEDGVVSAAEFII 307
           W+  ST+ +A+  L++AE   +KR +     VL   M+      ADID +G VS AEF+I
Sbjct: 333 WLLVSTLAVARAILFLAESRVDKRNRERAKKVLGESMSISQFLDADIDCNGCVSKAEFVI 392

Query: 308 YKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFLAQDSQTK 353
           YKLK+M KI+++DI  +  +F  LD   SG ++  DL    +S TK
Sbjct: 393 YKLKKMDKITEKDINPIGFQFDKLDRTNSGRITLLDLL---ESSTK 435

Probable voltage-independent potassium-selective tonoplast ion channel.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FWX6|TPK4_ARATH Two-pore potassium channel 4 OS=Arabidopsis thaliana GN=TPK4 PE=2 SV=2

 Score =  141 bits (356), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 84/263 (31%), Positives = 145/263 (55%), Gaps = 26/263 (9%)

Query: 72  LVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLS 131
           ++ L  YL  G  ++     Q  G +TN  +D+ YF IVT +TVGYGD+VP++  +K+L+
Sbjct: 39  MILLLVYLTFGVCTYSFFRDQFSGTETNLFVDAFYFSIVTFSTVGYGDIVPSTSTTKILT 98

Query: 132 CAFVFTGMGLVGMFLSKAADYLVDKQEILLVKALHRYQKVGPTDILKEIETNKVRYKCII 191
              V TG+  +   L++   +++  QE  ++  +++ +     D + E    K+R K  +
Sbjct: 99  IVLVSTGVVFLDYLLNRVVSHVLSLQENAILDRINKTRNRAIRDHIAE--DGKIRLKWKL 156

Query: 192 MLVLELVLILVGT--IFLVVVEKMSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWI 249
            L    V + VG+  +FL V E++ ++D+ Y    ++TT+GYGDK+F T  GR F V W+
Sbjct: 157 CLAFCAVGLCVGSGALFLHVFERLDWLDSVYLSVISVTTVGYGDKTFKTVEGRGFAVFWL 216

Query: 250 SSSTMTLAQFFLYVAEFNTEKRQKALVNWVLTRKMTHVDLEAADIDEDGVVSAAEFIIYK 309
             ST+ +A  FLY+AE   +             + T + L           S +EFI++K
Sbjct: 217 LLSTIAMATLFLYLAEMRID-------------RTTVMKLPP---------SESEFIVFK 254

Query: 310 LKEMGKISQEDIALVMEEFQDLD 332
           L+E G+IS++DI  ++ EF++L+
Sbjct: 255 LRESGRISEDDIKQIVREFENLE 277

Voltage-independent, instantaneously activating, potassium-selective plasma membrane ion channel. Open rectifier. Regulated by cytoplasmic pH and extra-cellular calcium. Has some permeability for Rb(+) and NH(4)(+), but none for Na(+) or Li(+).

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XFR0|KCO3_ARATH Potassium inward rectifier (Kir)-like channel 3 OS=Arabidopsis thaliana GN=KCO3 PE=1 SV=1

 Score =  103 bits (257), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 56/148 (37%), Positives = 87/148 (58%)

Query: 197 LVLILVGTIFLVVVEKMSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWISSSTMTL 256
            V+   G + +  V K+ ++D+F      +TT+G+GD++F+T  G     VW+  ST+ +
Sbjct: 107 FVVTFCGFLIVHFVVKIGWLDSFCFSVMMVTTVGFGDRAFNTWLGTFLAAVWLLVSTLAV 166

Query: 257 AQFFLYVAEFNTEKRQKALVNWVLTRKMTHVDLEAADIDEDGVVSAAEFIIYKLKEMGKI 316
           A+ FL++A+   +KR +     VL   ++     AADID DG +S AEF IYKLK+M KI
Sbjct: 167 ARAFLFLADARADKRNRERAKKVLGESISISQFFAADIDNDGRLSLAEFAIYKLKQMEKI 226

Query: 317 SQEDIALVMEEFQDLDFDQSGTLSPSDL 344
           +QED   +  +F  LD  QSG ++  DL
Sbjct: 227 TQEDFIQICNQFDKLDRTQSGRITLVDL 254

Probable calcium-activated potassium channel.

Arabidopsis thaliana (taxid: 3702)

>sp|P40310|TOK1_YEAST Outward-rectifier potassium channel TOK1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TOK1 PE=1 SV=1

 Score = 64.7 bits (156), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 90/206 (43%), Gaps = 30/206 (14%)

Query: 66  PNFKRVLVY---LAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVP 122
           PN + ++ Y   L+ +L  G+  F        GL      +++YFC V++ TVG GD++P
Sbjct: 243 PNERSIMAYTVLLSLWLIWGAGMF-------SGLLHITYGNALYFCTVSLLTVGLGDILP 295

Query: 123 NSVVSKLLSCAFVFTGMGLVGMFL---------SKAADYLVDKQEILLVKALHRYQKVGP 173
            SV +K++   F  +G+ L+G+ +         S    +   + E    K+   Y     
Sbjct: 296 KSVGAKIMVLIFSLSGVVLMGLIVFMTRSIIQKSSGPIFFFHRVEKGRSKSWKHYMDSSK 355

Query: 174 T-------DILKEIETNKVR----YKCIIMLVLELVLILVGTIFLVVVEKMSFVDAFYCV 222
                   D++K I     R    +   + + + +   L+G +     E  S+ +  Y  
Sbjct: 356 NLSEREAFDLMKCIRQTASRKQHWFSLSVTIAIFMAFWLLGALVFKFAENWSYFNCIYFC 415

Query: 223 CSTITTLGYGDKSFSTTGGRAFGVVW 248
              + T+GYGD +  T  GRAF V+W
Sbjct: 416 FLCLLTIGYGDYAPRTGAGRAFFVIW 441

Outwardly rectifying potassium channel.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	354
9739011	348	outward-rectifying potassium channel KCO	0.983	1.0	0.64	1e-128
356501636	349	PREDICTED: calcium-activated outward-rec	0.985	1.0	0.634	1e-127
357495031	349	Outward rectifying potassium channel [Me	0.985	1.0	0.662	1e-127
224097414	354	outward rectifying potassium channel [Po	0.997	0.997	0.628	1e-124
255563516	351	Calcium-activated outward-rectifying pot	0.991	1.0	0.603	1e-123
225461894	354	PREDICTED: calcium-activated outward-rec	0.991	0.991	0.603	1e-123
147776300	354	hypothetical protein VITISV_029267 [Viti	0.991	0.991	0.603	1e-122
154425489	349	potassium channel [Nicotiana tabacum]	0.977	0.991	0.614	1e-121
356552607	348	PREDICTED: calcium-activated outward-rec	0.983	1.0	0.628	1e-121
225461896	350	PREDICTED: calcium-activated outward-rec	0.988	1.0	0.58	1e-119

>gi|9739011|gb|AAF97863.1| outward-rectifying potassium channel KCO1 [Eucalyptus camaldulensis]

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 224/350 (64%), Positives = 274/350 (78%), Gaps = 2/350 (0%)

Query: 1   MASNGANQPLLSGFVDSTPQTNNKDAPKRRRLRRCRSAPQTDVAALDINEKDSTHLSESL 60
           M +NG  QPLLS  ++S PQT+ K+  KR RLRRC+SAP  +    + N       S S+
Sbjct: 1   MDANGVKQPLLSKPLNS-PQTDKKEL-KRNRLRRCKSAPLAEAVPQEANLNGPVQPSNSI 58

Query: 61  FGKPRPNFKRVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDL 120
                P+FKRV + L  YLG G++ FY V ++I+G KTN++ D++YFCIVTMTTVGYGDL
Sbjct: 59  LRNLHPSFKRVAIILVFYLGIGTMCFYLVRNEIDGEKTNDLFDAVYFCIVTMTTVGYGDL 118

Query: 121 VPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQEILLVKALHRYQKVGPTDILKEI 180
           VP S ++KLL+CAFVF+GM +VG+ LS+AADYLV+KQEILLVKALH   KVGPT++LKEI
Sbjct: 119 VPGSALTKLLACAFVFSGMAIVGLILSRAADYLVEKQEILLVKALHLRNKVGPTEMLKEI 178

Query: 181 ETNKVRYKCIIMLVLELVLILVGTIFLVVVEKMSFVDAFYCVCSTITTLGYGDKSFSTTG 240
           ETN VRYKC+   +L L+LI+ GT FL ++E +  VDAFYCVCSTITTLGYGDKSFST G
Sbjct: 179 ETNGVRYKCVTAFILLLLLIVAGTTFLALIENLDIVDAFYCVCSTITTLGYGDKSFSTEG 238

Query: 241 GRAFGVVWISSSTMTLAQFFLYVAEFNTEKRQKALVNWVLTRKMTHVDLEAADIDEDGVV 300
           GR F V WI +ST+ LAQFFLY+AE NTE RQ+ALV WV +R+MT+ DLEAAD+D DGVV
Sbjct: 239 GRIFAVFWILTSTICLAQFFLYIAELNTENRQRALVKWVPSRRMTNFDLEAADLDNDGVV 298

Query: 301 SAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFLAQDS 350
            AAEFIIYKLKEMGKI+QEDI+L++EEF DLD DQSGTLS SD+ LAQ S
Sbjct: 299 GAAEFIIYKLKEMGKINQEDISLILEEFDDLDVDQSGTLSGSDITLAQSS 348

Source: Eucalyptus camaldulensis

Species: Eucalyptus camaldulensis

Genus: Eucalyptus

Family: Myrtaceae

Order: Myrtales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501636|ref|XP_003519630.1| PREDICTED: calcium-activated outward-rectifying potassium channel 1-like [Glycine max]

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 222/350 (63%), Positives = 278/350 (79%), Gaps = 1/350 (0%)

Query: 1   MASNGANQPLLSGFVDSTPQTNNKDAPKRRRLRRCRSAPQTDVAALDINEKDSTHLSESL 60
           MA+NGA  PLLSG +D+T +T  +    +RRL R RSAP  ++   + N  +S   + S+
Sbjct: 1   MANNGAKDPLLSGSLDATQKTKQQ-LLNKRRLLRSRSAPHAELVPTETNCNESIPRTASI 59

Query: 61  FGKPRPNFKRVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDL 120
           F    P+FKR+ +YLA YLG G+L FY V +QI+G KT+ ILD++YF IVTMTTVGYGDL
Sbjct: 60  FQNLHPSFKRMAIYLAVYLGVGALIFYLVRNQIKGQKTDGILDALYFTIVTMTTVGYGDL 119

Query: 121 VPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQEILLVKALHRYQKVGPTDILKEI 180
           VPNS ++KLL+CAFVF+GM L+G+ +SKAADYLV+KQE+LLVKA+  +QK+G T+IL+E+
Sbjct: 120 VPNSHLAKLLACAFVFSGMALIGLIVSKAADYLVEKQELLLVKAMRMHQKIGSTEILREV 179

Query: 181 ETNKVRYKCIIMLVLELVLILVGTIFLVVVEKMSFVDAFYCVCSTITTLGYGDKSFSTTG 240
           ETNK RYK  ++  L L+LI+VGTIFLV VEK+  +DAFYCVCSTITTLGYGD+SFST  
Sbjct: 180 ETNKTRYKLFLVFSLLLILIIVGTIFLVTVEKLDVIDAFYCVCSTITTLGYGDQSFSTQA 239

Query: 241 GRAFGVVWISSSTMTLAQFFLYVAEFNTEKRQKALVNWVLTRKMTHVDLEAADIDEDGVV 300
           GR F V WI + T+TLAQ F+Y+AE NTE RQK LV WVLTRK+T++DLEAAD+DEDG V
Sbjct: 240 GRIFAVFWILTGTITLAQLFVYIAELNTEIRQKELVKWVLTRKVTNLDLEAADLDEDGTV 299

Query: 301 SAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFLAQDS 350
            AAEF+IYKLKEMGKISQEDI+LVM+EF+ LD D SGTLS SD+ LAQ S
Sbjct: 300 GAAEFVIYKLKEMGKISQEDISLVMQEFEQLDVDDSGTLSTSDITLAQSS 349

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357495031|ref|XP_003617804.1| Outward rectifying potassium channel [Medicago truncatula] gi|355519139|gb|AET00763.1| Outward rectifying potassium channel [Medicago truncatula]

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 232/350 (66%), Positives = 280/350 (80%), Gaps = 1/350 (0%)

Query: 1   MASNGANQPLLSGFVDSTPQTNNKDAPKRRRLRRCRSAPQTDVAALDINEKDSTHLSESL 60
           MAS+  N+PLL    D+  Q   K    +RRL R RSAP TD A L IN+K+S  LSE++
Sbjct: 1   MASDDTNEPLLLRSQDTVAQ-KAKGRLNQRRLLRSRSAPHTDHAPLVINDKESIPLSETI 59

Query: 61  FGKPRPNFKRVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDL 120
           FG   P+FK+V + L  YLG G+L FY V +QI+G+KT   LD++YF IVTMTTVGYGDL
Sbjct: 60  FGNLHPSFKKVAIILMVYLGVGTLIFYLVRNQIKGMKTERFLDALYFTIVTMTTVGYGDL 119

Query: 121 VPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQEILLVKALHRYQKVGPTDILKEI 180
           VPNS ++KLL+CAFVF+GM L+G+ LSKAADYLV+KQE+LL+KA+H  QKVGP++ILKE+
Sbjct: 120 VPNSDLTKLLACAFVFSGMALMGLILSKAADYLVEKQEVLLIKAMHMRQKVGPSEILKEL 179

Query: 181 ETNKVRYKCIIMLVLELVLILVGTIFLVVVEKMSFVDAFYCVCSTITTLGYGDKSFSTTG 240
           E NK RYK  ++ +L L+L++VGTIFLV VEK+  +DAFYCVCSTITTLGYGDKSFST  
Sbjct: 180 EINKTRYKFFLVFLLLLILVIVGTIFLVNVEKLEVIDAFYCVCSTITTLGYGDKSFSTQA 239

Query: 241 GRAFGVVWISSSTMTLAQFFLYVAEFNTEKRQKALVNWVLTRKMTHVDLEAADIDEDGVV 300
           GR F V WI + T+ LAQFFLY+AE NTE RQKALVNWVLTRKMT+ DLEAAD+DEDG V
Sbjct: 240 GRIFAVFWILTGTICLAQFFLYMAELNTESRQKALVNWVLTRKMTNYDLEAADLDEDGTV 299

Query: 301 SAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFLAQDS 350
            AAEF+IYKLKEMGKISQEDI LVM+EF++LD DQSGTLS SD+ LAQ S
Sbjct: 300 GAAEFVIYKLKEMGKISQEDITLVMKEFEELDIDQSGTLSVSDITLAQSS 349

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224097414|ref|XP_002310924.1| outward rectifying potassium channel [Populus trichocarpa] gi|222850744|gb|EEE88291.1| outward rectifying potassium channel [Populus trichocarpa]

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 222/353 (62%), Positives = 266/353 (75%)

Query: 1   MASNGANQPLLSGFVDSTPQTNNKDAPKRRRLRRCRSAPQTDVAALDINEKDSTHLSESL 60
           MASNGA QPLLSG VD   Q  N+    RRR+R  +S P  +    D +         S 
Sbjct: 1   MASNGAKQPLLSGLVDPASQIINECHRNRRRIRHVKSPPLAESVPSDTSGNGPIPCCGSF 60

Query: 61  FGKPRPNFKRVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDL 120
           +G    + K+V + LA YLG G++ FYAV   I+G KTN ILDS+YFCIVTMTTVGYGDL
Sbjct: 61  WGGLHQSLKKVALLLAVYLGLGTICFYAVRDDIKGKKTNPILDSVYFCIVTMTTVGYGDL 120

Query: 121 VPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQEILLVKALHRYQKVGPTDILKEI 180
           VPNS + KLL+C FVF GM LVG+ LSKAADYLVDKQEILL+KALH+++K GP   LKEI
Sbjct: 121 VPNSALVKLLACVFVFVGMALVGLILSKAADYLVDKQEILLIKALHKHEKPGPAASLKEI 180

Query: 181 ETNKVRYKCIIMLVLELVLILVGTIFLVVVEKMSFVDAFYCVCSTITTLGYGDKSFSTTG 240
           ET+KV+YKC + L +  VL+LVGT+FL +VE ++ +DAFYCVC TITTLGYGDKSFST G
Sbjct: 181 ETSKVKYKCYLALAILSVLMLVGTVFLYMVEDLNIIDAFYCVCCTITTLGYGDKSFSTGG 240

Query: 241 GRAFGVVWISSSTMTLAQFFLYVAEFNTEKRQKALVNWVLTRKMTHVDLEAADIDEDGVV 300
           GR F + W+ + T+ L   FLY+AE  TE RQ+ LV+WVLTRK T++DLEAADID+DGVV
Sbjct: 241 GRLFALFWMLTGTIGLGLLFLYIAELFTESRQRTLVHWVLTRKTTNLDLEAADIDDDGVV 300

Query: 301 SAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFLAQDSQTK 353
            AAEFI+YKLKEMGKISQEDIALVMEEF+DLD DQSGTLS SD+  AQ +Q K
Sbjct: 301 GAAEFILYKLKEMGKISQEDIALVMEEFEDLDVDQSGTLSDSDITPAQSTQMK 353

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563516|ref|XP_002522760.1| Calcium-activated outward-rectifying potassium channel, putative [Ricinus communis] gi|223537998|gb|EEF39611.1| Calcium-activated outward-rectifying potassium channel, putative [Ricinus communis]

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 212/351 (60%), Positives = 273/351 (77%)

Query: 1   MASNGANQPLLSGFVDSTPQTNNKDAPKRRRLRRCRSAPQTDVAALDINEKDSTHLSESL 60
           MASNGA QPLLSG +DST Q+N+  AP +RR RR +SAP  +    D+    +    ES+
Sbjct: 1   MASNGAKQPLLSGLLDSTVQSNSAQAPSKRRFRRVKSAPAAEFILSDVCSDRTLQHPESI 60

Query: 61  FGKPRPNFKRVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDL 120
           F K  P+ + V + LA YLG G++ FY     IEG KTN ILD++YF +VTMTTVGYGDL
Sbjct: 61  FRKIEPSIRNVAILLAGYLGVGTMCFYIFRDDIEGTKTNPILDAMYFSVVTMTTVGYGDL 120

Query: 121 VPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQEILLVKALHRYQKVGPTDILKEI 180
           VPN+   K+L+C FVFTG+ +VG+ LSKAADYLV+KQEI+LV+AL++++K+G  + +K+I
Sbjct: 121 VPNTAFVKMLACVFVFTGVAIVGLILSKAADYLVEKQEIMLVEALNKHKKMGQLETMKDI 180

Query: 181 ETNKVRYKCIIMLVLELVLILVGTIFLVVVEKMSFVDAFYCVCSTITTLGYGDKSFSTTG 240
           ETN+VRYKC + + +  +L++VGTIFL+ +EKM  +DA YCVCST+TTLG+GD+SFST  
Sbjct: 181 ETNRVRYKCYLAMGILSLLMMVGTIFLLNIEKMDMIDAVYCVCSTVTTLGFGDESFSTRT 240

Query: 241 GRAFGVVWISSSTMTLAQFFLYVAEFNTEKRQKALVNWVLTRKMTHVDLEAADIDEDGVV 300
           GRAFG+VWI  ST+ L Q FLYVAE  TE RQ+ALVNWVLTRK T+ DLEAADID +GVV
Sbjct: 241 GRAFGIVWILISTLGLGQVFLYVAEVFTETRQRALVNWVLTRKTTNEDLEAADIDNNGVV 300

Query: 301 SAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFLAQDSQ 351
            AAEFI+YKLKEMGKI+++DI++VMEEF+ LD D+SGTLS SDL LAQ  +
Sbjct: 301 GAAEFILYKLKEMGKITEDDISIVMEEFEKLDVDESGTLSVSDLVLAQSKR 351

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461894|ref|XP_002264726.1| PREDICTED: calcium-activated outward-rectifying potassium channel 1 [Vitis vinifera]

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 212/351 (60%), Positives = 271/351 (77%)

Query: 1   MASNGANQPLLSGFVDSTPQTNNKDAPKRRRLRRCRSAPQTDVAALDINEKDSTHLSESL 60
           MA  GANQ  +SG ++ + QT  K A KRRR RRC+SAP  +  +L  N   S   SES 
Sbjct: 1   MACGGANQHSISGQLNLSSQTYQKAASKRRRYRRCKSAPAVESISLHSNHSTSIQHSEST 60

Query: 61  FGKPRPNFKRVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDL 120
             K   +  +V++ LA YLG G++ FY    Q++G KTN ++D++YFCIVTMTTVGYGD+
Sbjct: 61  VQKHHTSSIKVIIILAIYLGVGTVCFYLTRHQMKGKKTNGVVDAVYFCIVTMTTVGYGDI 120

Query: 121 VPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQEILLVKALHRYQKVGPTDILKEI 180
           VP+SV +KLL+CAFVFTGM L+ + LSKAADYLV+KQE LLV+AL+ Y+ VG  +ILKE+
Sbjct: 121 VPDSVATKLLACAFVFTGMALIALCLSKAADYLVEKQETLLVRALYMYKDVGMAEILKEM 180

Query: 181 ETNKVRYKCIIMLVLELVLILVGTIFLVVVEKMSFVDAFYCVCSTITTLGYGDKSFSTTG 240
           ETN+VRYKC ++ +L LV+I+ GT+FL  VE++SF+D+FYCVC TITTLGYGD SF+T  
Sbjct: 181 ETNRVRYKCFMVFLLLLVVIIGGTVFLSKVEELSFIDSFYCVCCTITTLGYGDVSFTTKA 240

Query: 241 GRAFGVVWISSSTMTLAQFFLYVAEFNTEKRQKALVNWVLTRKMTHVDLEAADIDEDGVV 300
           GRAF V WI + T++LAQFFLY+AE NTE+RQK LV WVL RKMT+ DLE AD+DEDGVV
Sbjct: 241 GRAFAVFWILTGTISLAQFFLYLAELNTERRQKKLVKWVLDRKMTNADLEVADLDEDGVV 300

Query: 301 SAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFLAQDSQ 351
             ++FIIYKLKEMGKIS+ED+++VM+EF+ LD DQSGTLS  D+ LAQ  Q
Sbjct: 301 DVSDFIIYKLKEMGKISEEDVSIVMKEFEKLDIDQSGTLSAVDITLAQSFQ 351

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147776300|emb|CAN63183.1| hypothetical protein VITISV_029267 [Vitis vinifera]

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 212/351 (60%), Positives = 271/351 (77%)

Query: 1   MASNGANQPLLSGFVDSTPQTNNKDAPKRRRLRRCRSAPQTDVAALDINEKDSTHLSESL 60
           MA  GANQ  +SG ++ + QTN K A KRRR RRC+SAP  +  +L  N   S    ES 
Sbjct: 1   MACGGANQHSISGQLNLSSQTNQKAASKRRRYRRCKSAPAVESISLHSNHSTSIQHLEST 60

Query: 61  FGKPRPNFKRVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDL 120
             K   +  +V++ LA YLG G++ FY    Q++G KTN ++D++YFCIVTMTTVGYGD+
Sbjct: 61  VQKLHTSSIKVIIILAIYLGVGTVCFYLTRHQMKGKKTNGVVDAVYFCIVTMTTVGYGDI 120

Query: 121 VPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQEILLVKALHRYQKVGPTDILKEI 180
           VP+SV +KLL+CAFVFTGM L+ + LSKAADYLV+KQE LLV+AL+ Y+ VG T+ILKE+
Sbjct: 121 VPDSVATKLLACAFVFTGMVLIALSLSKAADYLVEKQETLLVRALYMYKDVGMTEILKEM 180

Query: 181 ETNKVRYKCIIMLVLELVLILVGTIFLVVVEKMSFVDAFYCVCSTITTLGYGDKSFSTTG 240
           ETN+VRYKC ++ +L LV+I+ GT+FL  VE++SF+D+FYCVC TITTLGYGD SF+T  
Sbjct: 181 ETNRVRYKCFMVFLLLLVVIIGGTVFLSKVEELSFIDSFYCVCCTITTLGYGDVSFTTKA 240

Query: 241 GRAFGVVWISSSTMTLAQFFLYVAEFNTEKRQKALVNWVLTRKMTHVDLEAADIDEDGVV 300
           GRAF V WI + T++LAQFFLY+AE NTE+RQK LV WVL RKMT+  LE AD+DEDGVV
Sbjct: 241 GRAFAVFWILTGTISLAQFFLYLAELNTERRQKKLVKWVLDRKMTNAALEVADLDEDGVV 300

Query: 301 SAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFLAQDSQ 351
             ++FIIYKLKEMGKIS+ED+++VM+EF+ LD DQSGTLS  D+ LAQ  Q
Sbjct: 301 DVSDFIIYKLKEMGKISEEDVSIVMKEFEKLDIDQSGTLSGVDITLAQSFQ 351

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|154425489|dbj|BAF74750.1| potassium channel [Nicotiana tabacum]

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 217/353 (61%), Positives = 274/353 (77%), Gaps = 7/353 (1%)

Query: 1   MASNGANQPLLSGFVDSTPQTNNKDAPKRRRLRRCRSAPQTDVAALDINE-KDSTHL--S 57
           MA +   QPLL       PQT    AP RRRLRR +SAP  +    +IN+ KD+  L  S
Sbjct: 1   MADSNIKQPLLH----LPPQTCQNVAPMRRRLRRFKSAPMAEFFPGEINDTKDNQSLPRS 56

Query: 58  ESLFGKPRPNFKRVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGY 117
           +S+  K  P+F++V+ YL  YL  G++ FY V +QIEG K N +LDS+YFC+VTMTTVGY
Sbjct: 57  DSILDKLHPSFRKVMFYLVIYLAIGTMCFYFVQNQIEGKKVNGVLDSVYFCVVTMTTVGY 116

Query: 118 GDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQEILLVKALHRYQKVGPTDIL 177
           GDLVP+S  SKLL+  FVF+GM LVG+ LS+ ADYLV+KQE LL+KA+H  +KV P++IL
Sbjct: 117 GDLVPDSTTSKLLASVFVFSGMALVGLVLSEGADYLVEKQETLLIKAMHVRRKVSPSEIL 176

Query: 178 KEIETNKVRYKCIIMLVLELVLILVGTIFLVVVEKMSFVDAFYCVCSTITTLGYGDKSFS 237
           KEIETNK+RYKC++  V  +VL++VGT+FL  VEK+S +DAFYCVCSTITTLGYGDKSFS
Sbjct: 177 KEIETNKLRYKCLVTTVSLVVLMVVGTVFLAKVEKLSTIDAFYCVCSTITTLGYGDKSFS 236

Query: 238 TTGGRAFGVVWISSSTMTLAQFFLYVAEFNTEKRQKALVNWVLTRKMTHVDLEAADIDED 297
           T  GR F V WI +ST+ LAQFFLYVAE NTEKR+K LV  VLTR+MT+VDLE AD+D D
Sbjct: 237 TRAGRIFAVFWILTSTICLAQFFLYVAEVNTEKRRKELVQLVLTRRMTNVDLEEADLDND 296

Query: 298 GVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFLAQDS 350
           G+V AAEF++YKLKEMGKI+Q+D++L+++EF++LD DQSGTLS +DL LAQ S
Sbjct: 297 GLVGAAEFVVYKLKEMGKINQDDVSLLLDEFENLDVDQSGTLSTTDLTLAQSS 349

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552607|ref|XP_003544656.1| PREDICTED: calcium-activated outward-rectifying potassium channel 1-like isoform 1 [Glycine max] gi|356552609|ref|XP_003544657.1| PREDICTED: calcium-activated outward-rectifying potassium channel 1-like isoform 2 [Glycine max]

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 220/350 (62%), Positives = 272/350 (77%), Gaps = 2/350 (0%)

Query: 1   MASNGANQPLLSGFVDSTPQTNNKDAPKRRRLRRCRSAPQTDVAALDINEKDSTHLSESL 60
           MA+NG  +PLL   +D+T +T  K    +R L R RSAP  ++   + N  +S   S S+
Sbjct: 1   MANNGVKEPLLWVSLDATQKT--KQQLNKRSLLRFRSAPHAEIVPTETNGNESIPHSASI 58

Query: 61  FGKPRPNFKRVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDL 120
           F    P+FKRV +YLA YLG G+L FY V +QI+G KT+ ILD++YF IVTMTTVGYGDL
Sbjct: 59  FQNLHPSFKRVAIYLAVYLGVGALIFYLVRNQIKGQKTDGILDALYFTIVTMTTVGYGDL 118

Query: 121 VPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQEILLVKALHRYQKVGPTDILKEI 180
           VPNS ++KLL+CAFVF+GM L+G+ +SKAADYLV+KQE+LLVKA+  +QKVG T+IL+E+
Sbjct: 119 VPNSHLTKLLACAFVFSGMALIGLIVSKAADYLVEKQELLLVKAMRMHQKVGSTEILREV 178

Query: 181 ETNKVRYKCIIMLVLELVLILVGTIFLVVVEKMSFVDAFYCVCSTITTLGYGDKSFSTTG 240
           +TNK RYK  ++  L L+LI+ GTIFLV VEK+  +DAFYCVCSTITTLGYGD+SFST  
Sbjct: 179 QTNKTRYKLFLVFFLLLILIIAGTIFLVTVEKLDVIDAFYCVCSTITTLGYGDQSFSTQA 238

Query: 241 GRAFGVVWISSSTMTLAQFFLYVAEFNTEKRQKALVNWVLTRKMTHVDLEAADIDEDGVV 300
           GR F V WI + T+TLAQ FLY+AE NTE RQK LV WVLTRK+T+ DLEAAD+D DG V
Sbjct: 239 GRIFAVFWILTGTITLAQLFLYIAELNTEIRQKELVKWVLTRKVTNSDLEAADLDVDGTV 298

Query: 301 SAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFLAQDS 350
            AAEF+IYKLKEMGKISQEDI+LVM+EF+ LD D SGTLS SD+ LAQ S
Sbjct: 299 RAAEFVIYKLKEMGKISQEDISLVMQEFEQLDVDDSGTLSTSDITLAQSS 348

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461896|ref|XP_002264798.1| PREDICTED: calcium-activated outward-rectifying potassium channel 1 [Vitis vinifera] gi|296089904|emb|CBI39723.3| unnamed protein product [Vitis vinifera]

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 203/350 (58%), Positives = 264/350 (75%)

Query: 1   MASNGANQPLLSGFVDSTPQTNNKDAPKRRRLRRCRSAPQTDVAALDINEKDSTHLSESL 60
           M    A +P + G ++ +PQTN K + KR+R RRCRSAP            DS H S+ +
Sbjct: 1   MDHGAAAKPSVLGLLNPSPQTNQKASLKRKRYRRCRSAPVAACTHPHPAGPDSLHRSQII 60

Query: 61  FGKPRPNFKRVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDL 120
             K  PN  +V+  LA YLG G++ FY     + G KTN ++D++YFCIVTM+TVGYGD+
Sbjct: 61  SRKLHPNVVKVIAVLALYLGAGTVIFYLTRHHMRGKKTNGVVDAVYFCIVTMSTVGYGDI 120

Query: 121 VPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQEILLVKALHRYQKVGPTDILKEI 180
           VPNSV +KLL+CAFVF GM L+ + LSKAADYLV+KQE+LLV+ALH  Q VG  ++++E+
Sbjct: 121 VPNSVATKLLACAFVFIGMALIALGLSKAADYLVEKQEMLLVRALHMNQNVGTVEMMREM 180

Query: 181 ETNKVRYKCIIMLVLELVLILVGTIFLVVVEKMSFVDAFYCVCSTITTLGYGDKSFSTTG 240
           ETN+V+ KC++M ++ +V+I+ GT+FL  VE MSFVDAFYCVC TITTLGYGD SF+T G
Sbjct: 181 ETNRVKNKCLVMSLILVVVIIAGTVFLAEVEGMSFVDAFYCVCCTITTLGYGDVSFTTQG 240

Query: 241 GRAFGVVWISSSTMTLAQFFLYVAEFNTEKRQKALVNWVLTRKMTHVDLEAADIDEDGVV 300
           GR F + WI + +++LAQ   Y+AE NTE+RQK LV WVL R+MT +DLEAAD+DEDGVV
Sbjct: 241 GRVFAIFWILTGSISLAQLLFYIAELNTERRQKKLVKWVLGRQMTKLDLEAADLDEDGVV 300

Query: 301 SAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFLAQDS 350
             ++FIIYKLKEMGKISQ+DIA+VM+EFQ+LD DQSGTLS +D+ LAQ S
Sbjct: 301 DVSDFIIYKLKEMGKISQKDIAIVMKEFQELDVDQSGTLSNTDVQLAQLS 350

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	354
TAIR|locus:2162162	363	KCO1 "CA2+ ACTIVATED OUTWARD R	0.983	0.958	0.584	1.1e-103
UNIPROTKB|Q850M0	347	TPKA "Two pore potassium chann	0.980	1.0	0.552	1.1e-96
UNIPROTKB|Q8LIN5	349	TPKB "Two pore potassium chann	0.935	0.948	0.521	5.4e-86
TAIR|locus:2141375	408	KCO5 "Ca2+ activated outward r	0.918	0.796	0.335	1.8e-46
TAIR|locus:2117681	436	KCO6 "Ca2+ activated outward r	0.864	0.701	0.354	2.1e-45
TAIR|locus:2170423	443	KCO2 "Ca2+ activated outward r	0.946	0.756	0.332	9.3e-43
TAIR|locus:2196155	284	TPK4 [Arabidopsis thaliana (ta	0.562	0.700	0.311	5e-28
TAIR|locus:2170413	260	KCO3 "AT5G46360" [Arabidopsis	0.401	0.546	0.402	1.5e-26
UNIPROTKB|Q8E842	131	Q8E842 "Potassium/ion transpor	0.186	0.503	0.388	3.7e-08
TIGR_CMR|SO_A0098	131	SO_A0098 "potassium/ion transp	0.186	0.503	0.388	3.7e-08

TAIR|locus:2162162 KCO1 "CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1027 (366.6 bits), Expect = 1.1e-103, P = 1.1e-103
 Identities = 208/356 (58%), Positives = 264/356 (74%)

Query:     1 MASNGANQPLL-SGFVDSTPQTNNKDA----PKRRRLRRCRSAPQTDVAALDINEKDST- 54
             M+S+ A  PLL +  +D+  Q  N ++     ++RRLRR RSAP+ D    D  + D   
Sbjct:     1 MSSDAARTPLLPTEKIDTMAQDFNLNSRTSSSRKRRLRRSRSAPRGDCMYNDDVKIDEPP 60

Query:    55 -HLSE-SLFGKPRPNFKRVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTM 112
              H S+  +F    PN +RV+++LA YL  G+L FY V  QI G KT+ ++D++YFCIVTM
Sbjct:    61 PHPSKIPMFSDLNPNLRRVIMFLALYLTIGTLCFYLVRDQISGHKTSGVVDALYFCIVTM 120

Query:   113 TTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQEILLVKALHRYQKVG 172
             TTVGYGDLVPNS  S+LL+CAFVF+GM LVG  LS+AADYLV+KQE LLV+A H  Q  G
Sbjct:   121 TTVGYGDLVPNSSASRLLACAFVFSGMVLVGHLLSRAADYLVEKQEALLVRAFHLRQSFG 180

Query:   173 PTDILKEIETNKVRYKCXXXXXXXXXXXXXGTIFLVVVEKMSFVDAFYCVCSTITTLGYG 232
             PTDILKE+ TNK+RYKC             GTIFLV+VEKM  + AFYCVCST+TTLGYG
Sbjct:   181 PTDILKELHTNKLRYKCYATCLVLVVLFIVGTIFLVMVEKMPVISAFYCVCSTVTTLGYG 240

Query:   233 DKSFSTTGGRAFGVVWISSSTMTLAQFFLYVAEFNTEKRQKALVNWVLTRKMTHVDLEAA 292
             DKSF++  GR F V WI +S++ LAQFFLYVAE NTE +Q+ALV WVLTR++T+ DLEAA
Sbjct:   241 DKSFNSEAGRLFAVFWILTSSICLAQFFLYVAELNTENKQRALVKWVLTRRITNNDLEAA 300

Query:   293 DIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFLAQ 348
             D+DEDGVV AAEFI+YKLKEMGKI ++DI+ +M+EF+ LD+D+SGTL+ SD+ LAQ
Sbjct:   301 DLDEDGVVGAAEFIVYKLKEMGKIDEKDISGIMDEFEQLDYDESGTLTTSDIVLAQ 356

GO:0005267 "potassium channel activity" evidence=IEA

GO:0015271 "outward rectifier potassium channel activity" evidence=ISS;IDA

GO:0016020 "membrane" evidence=IEA

GO:0071805 "potassium ion transmembrane transport" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005216 "ion channel activity" evidence=IDA

GO:0051260 "protein homooligomerization" evidence=IPI

GO:0010029 "regulation of seed germination" evidence=IMP

GO:0010119 "regulation of stomatal movement" evidence=IMP

GO:0030007 "cellular potassium ion homeostasis" evidence=IMP

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0006816 "calcium ion transport" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

GO:0015269 "calcium-activated potassium channel activity" evidence=IDA

UNIPROTKB|Q850M0 TPKA "Two pore potassium channel a" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 961 (343.3 bits), Expect = 1.1e-96, P = 1.1e-96
 Identities = 194/351 (55%), Positives = 247/351 (70%)

Query:     1 MASNGANQPLLSGFVDSTPQTNNKDAPKRRRLRRCRSAPQTDVAALDINEKDSTHLSESL 60
             M  N   Q LL+   D+      K +    R RRCRS P TD       EK S+  ++ L
Sbjct:     1 MDDNSIQQSLLA---DNPNVLQRKPSEGVNRFRRCRSTPSTDPLQ-GPPEKGSSVKAKEL 56

Query:    61 FGKPRPNFKRVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDL 120
             F + RP+F+ V + L  YL  G L+FYAV  +I G +TN +LD++YFC+VTMTTVGYGDL
Sbjct:    57 FKEMRPSFRLVGLLLFIYLLVGVLAFYAVMDEISGKRTNRVLDALYFCVVTMTTVGYGDL 116

Query:   121 VPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQEILLVKALHRYQKVGPTDILKEI 180
             VPN+  +KLL+CAFVF GM +V +F+SK ADYLV+KQE+L  KALH   K G T +L+ I
Sbjct:   117 VPNNDTTKLLACAFVFMGMAVVALFVSKVADYLVEKQEVLFFKALHTNLKGGETKMLRAI 176

Query:   181 ETNKVRYKCXXXXXXXXXXXXXGTIFLVVVEKMSFVDAFYCVCSTITTLGYGDKSFSTTG 240
             ETN+++YK              GT+FL  VEK+S VD+FYCVC+TITTLGYGDKSFS+  
Sbjct:   177 ETNRIKYKFYTNALLLVLSIISGTVFLWKVEKLSLVDSFYCVCATITTLGYGDKSFSSKL 236

Query:   241 GRAFGVVWISSSTMTLAQFFLYVAEFNTEKRQKALVNWVLTRKMTHVDLEAADIDEDGVV 300
             GR F V WI +ST+ +AQFF+Y+AE  TE+RQK L NWVLTRKMT +DLEAAD+D+D  V
Sbjct:   237 GRVFAVFWIITSTIIMAQFFMYLAEIYTERRQKMLANWVLTRKMTKMDLEAADLDDDRQV 296

Query:   301 SAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFLAQDSQ 351
              AAEF++YKLKE+GKI+QE+I+  +EEF+ LD D SGTLSP DL LAQ +Q
Sbjct:   297 GAAEFVVYKLKELGKINQEEISSFLEEFEKLDVDHSGTLSPYDLTLAQSAQ 347

GO:0005242 "inward rectifier potassium channel activity" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0030007 "cellular potassium ion homeostasis" evidence=IC

GO:0031004 "potassium ion-transporting ATPase complex" evidence=IDA

UNIPROTKB|Q8LIN5 TPKB "Two pore potassium channel b" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 860 (307.8 bits), Expect = 5.4e-86, P = 5.4e-86
 Identities = 179/343 (52%), Positives = 229/343 (66%)

Query:     8 QPLLSGFVDSTPQTNNKDAPKRRRLRRCRSAPQTDVAALDINEKDSTHLS-ESLF-GKPR 65
             QPLL    D  P          RR RRCR+AP ++    D +   +     ++LF G  R
Sbjct:     7 QPLLHDGGDQKPPPEGA----ARRFRRCRTAPSSEPPPTDKDNSSAADAPPKTLFTGGGR 62

Query:    66 PNFKRVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSV 125
             P+F+ V + L AYL  G+++FY     + G +T   LD++YFC+VTMTTVGYGDLVP S 
Sbjct:    63 PSFRLVGLLLVAYLLLGTIAFYLAMDHMSGTRTTRALDALYFCVVTMTTVGYGDLVPASD 122

Query:   126 VSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQEILLVKALHRYQKVGPTDILKEIETNKV 185
              +KLL+CAFVF G+ +VG FLSKAADYLV+KQE LL +ALH +  V      + +E NKV
Sbjct:   123 AAKLLACAFVFAGVAVVGTFLSKAADYLVEKQEALLFRALHSHTMV------RAMEMNKV 176

Query:   186 RYKCXXXXXXXXXXXXXGTIFLVVVEKMSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFG 245
             RYK              GT+ L  VE M  VDAFYCVC+T+TTLGYGD+SFS+ GGRAF 
Sbjct:   177 RYKLYTAGLLLVAAVASGTVVLWKVEGMRAVDAFYCVCATVTTLGYGDRSFSSEGGRAFA 236

Query:   246 VVWISSSTMTLAQFFLYVAEFNTEKRQKALVNWVLTRKMTHVDLEAADIDEDGVVSAAEF 305
             V WI+ ST+ +A FFLY AE  TE+RQ+ L  WVL R+ T++DLEAAD+D D  V AA+F
Sbjct:   237 VAWITVSTVVVALFFLYAAELYTERRQRELARWVLRRRTTNMDLEAADLDGDHRVGAADF 296

Query:   306 IIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFLAQ 348
             ++YKLKE+GKISQEDI+  ++EF +LD D SGTLSP+DL  AQ
Sbjct:   297 VLYKLKELGKISQEDISEFLDEFDNLDADHSGTLSPADLAAAQ 339

GO:0005242 "inward rectifier potassium channel activity" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0030007 "cellular potassium ion homeostasis" evidence=IC

GO:0071805 "potassium ion transmembrane transport" evidence=IDA

TAIR|locus:2141375 KCO5 "Ca2+ activated outward rectifying K+ channel 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 487 (176.5 bits), Expect = 1.8e-46, P = 1.8e-46
 Identities = 114/340 (33%), Positives = 183/340 (53%)

Query:    16 DSTPQTNNKDAPKRRRLRRCRSAPQTDVAALDINEKDSTHLSESLFGKPRPNFKRVLVYL 75
             DS     N+   + R L R R+AP   V   D+  K       S   K     ++ +  L
Sbjct:    68 DSDSDETNRFLSQTRPLHRSRTAPAM-VIIKDLRTKPPETKKPSPVSKSI--IRQAIFLL 124

Query:    76 AAYLGGGSLSFYAVN-SQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAF 134
               YL  G +S Y+ N     G++T+ ++D++YFCIVTM T+GYGD+ P +  +K+ +  F
Sbjct:   125 IVYLTLG-VSIYSFNRDHYSGIETHPVVDALYFCIVTMCTIGYGDIAPLTPWTKIFAVVF 183

Query:   135 VFTGMGLVGMFLSKAADYLVDKQEILLVKAL--------HRYQKVGPTDILKEIETNK-- 184
             V  G G + + LS   +Y++D QE +++  +        H + +    D + + E  +  
Sbjct:   184 VLFGFGFLDILLSGVVNYVLDLQESMILTGIQTRQHHQHHHHHRFSAKDYIIDFEKGRMR 243

Query:   185 VRYKCXXXXXXXXXXXXXGTIFLVVVEKMSFVDAFYCVCSTITTLGYGDKSFSTTGGRAF 244
             +R K              G + L  VE++ FVD+ Y    ++TT+GYGD++F T  GR F
Sbjct:   244 IRMKVCLALCVVVLCIGVGALVLHFVEELGFVDSVYLSVMSVTTVGYGDRAFKTLQGRLF 303

Query:   245 GVVWISSSTMTLAQFFLYVAEFNTEKRQKALVNWVLTRKMTHVDLEAADIDEDGVVSAAE 304
               VW+  ST+ +A+ FLY+AE   ++R +  V   L R++T  DL  AD  + G +S +E
Sbjct:   304 AAVWLLVSTLAVARAFLYLAEARIDRRHRKAVKLALNREITVDDLLKADTYQHGFISKSE 363

Query:   305 FIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDL 344
             +I+ KLKEMGKI+Q+DI  V+ +F+ LD +Q G ++  DL
Sbjct:   364 YIVLKLKEMGKITQKDIDQVVIQFEKLDPNQIGKITLPDL 403

GO:0005267 "potassium channel activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0015271 "outward rectifier potassium channel activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0071805 "potassium ion transmembrane transport" evidence=IEA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

TAIR|locus:2117681 KCO6 "Ca2+ activated outward rectifying K+ channel 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 477 (173.0 bits), Expect = 2.1e-45, P = 2.1e-45
 Identities = 113/319 (35%), Positives = 174/319 (54%)

Query:    32 LRRCRSAPQTDVAA-LD--INEKDSTHLSESLFGKPRPNFKRVLVYLAAYLGGGSLSFYA 88
             L R ++AP   V   L   I +KD T  S S+    R  F  ++VYL+     G L ++ 
Sbjct:   118 LHRSKTAPAMAVINDLHHPIRQKDPTETSRSVV---RQAFALLVVYLSL----GVLIYWL 170

Query:    89 VNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSK 148
                     +T+ ++D +YFCIVTM T+GYGD+ PNSVV+KL S  FV  G G + + LS 
Sbjct:   171 NRDHYVVNQTHPVVDGLYFCIVTMCTIGYGDITPNSVVTKLFSIMFVLVGFGFIDILLSG 230

Query:   149 AADYLVDKQE-ILLVKALHRYQKVGPTDILKEIETNK--VRYKCXXXXXXXXXXXXXGTI 205
                Y++D QE  +L  A  R +       + +++  +  +R K              G  
Sbjct:   231 MVSYVLDLQESYMLDSAKRRDEPEKRRSYIIDVKKGRMRIRLKVALALGVVVLCIAVGVG 290

Query:   206 FLVVVEKMSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWISSSTMTLAQFFLYVAE 265
              +  +E++ ++D+FY    ++TT+GYGD++F T  GR F  +W+  ST+ +A+ FLY+AE
Sbjct:   291 IMHFIEEIGWLDSFYLSVMSVTTVGYGDRAFKTLPGRLFAAIWLLVSTLAVARAFLYLAE 350

Query:   266 FNTEKRQKALVNWVLTRKMTHVDLEAADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVM 325
                +KR +     VL   M+     AADID +G VS AE++IYKLKEM KI+ +DI  + 
Sbjct:   351 ARVDKRNRERAKKVLCETMSVSQFFAADIDNNGCVSKAEYVIYKLKEMEKITDKDILPIS 410

Query:   326 EEFQDLDFDQSGTLSPSDL 344
             ++F  LD   +G ++  DL
Sbjct:   411 KQFDKLDRCSNGKITLLDL 429

GO:0005267 "potassium channel activity" evidence=IEA

GO:0015271 "outward rectifier potassium channel activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0071805 "potassium ion transmembrane transport" evidence=IEA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

TAIR|locus:2170423 KCO2 "Ca2+ activated outward rectifying K+ channel 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 452 (164.2 bits), Expect = 9.3e-43, P = 9.3e-43
 Identities = 119/358 (33%), Positives = 187/358 (52%)

Query:    12 SGFVDST----PQTN-NKDAPKRR---RLRRCRSAPQTDVAALD-INEKDSTHLSESLFG 62
             + F DST    P T  NK   K +      R ++AP   +AA++ I+  +     +    
Sbjct:    85 TSFSDSTDLLLPLTEPNKPVRKSKPTINFHRSKTAPA--MAAINNISHPNDPKTDQQSDS 142

Query:    63 KPRPNFKRVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVP 122
             K   N  + +  L  YL  G L ++         +T+ ++D++YFCIVTM T+GYGD+ P
Sbjct:   143 KTIVN--QAVALLVVYLSLGVLIYWLNRDSYNVKQTHPVVDALYFCIVTMCTIGYGDITP 200

Query:   123 NSVVSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQE-ILLVKALHRYQKVGPTDILKE-- 179
             +SVV+KL S  FV  G G + + LS    Y++D QE  +L  A +    +   D ++   
Sbjct:   201 DSVVTKLFSIFFVLVGFGFMDILLSGMVTYVLDLQENYMLETARNESLNLNDRDKVRSYI 260

Query:   180 IETNK----VRYKCXXXXXXXXXXXXXGTIFLVVVEKMSFVDAFYCVCSTITTLGYGDKS 235
             I+  K    +R K              G + +  VEK+ ++D+FY    ++TT+GYGD++
Sbjct:   261 IDVKKGRMRIRLKVGLALGVVVLCLGFGVLIMHFVEKIGWLDSFYFSVMSVTTVGYGDRA 320

Query:   236 FSTTGGRAFGVVWISSSTMTLAQFFLYVAEFNTEKRQKALVNWVLTRKMTHVDLEAADID 295
             F+T  GR    +W+  ST+ +A+  L++AE   +KR +     VL   M+      ADID
Sbjct:   321 FNTLAGRLLAAMWLLVSTLAVARAILFLAESRVDKRNRERAKKVLGESMSISQFLDADID 380

Query:   296 EDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFLAQDSQTK 353
              +G VS AEF+IYKLK+M KI+++DI  +  +F  LD   SG ++  DL    +S TK
Sbjct:   381 CNGCVSKAEFVIYKLKKMDKITEKDINPIGFQFDKLDRTNSGRITLLDLL---ESSTK 435

GO:0005267 "potassium channel activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0015271 "outward rectifier potassium channel activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0071805 "potassium ion transmembrane transport" evidence=IEA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

TAIR|locus:2196155 TPK4 [Arabidopsis thaliana (taxid:3702)]

 Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 62/199 (31%), Positives = 110/199 (55%)

Query:    72 LVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLS 131
             ++ L  YL  G  ++     Q  G +TN  +D+ YF IVT +TVGYGD+VP++  +K+L+
Sbjct:    39 MILLLVYLTFGVCTYSFFRDQFSGTETNLFVDAFYFSIVTFSTVGYGDIVPSTSTTKILT 98

Query:   132 CAFVFTGMGLVGMFLSKAADYLVDKQEILLVKALHRYQKVGPTDILKEIETNKVRYKCXX 191
                V TG+  +   L++   +++  QE  ++  +++ +     D + E    ++++K   
Sbjct:    99 IVLVSTGVVFLDYLLNRVVSHVLSLQENAILDRINKTRNRAIRDHIAEDGKIRLKWKLCL 158

Query:   192 XXXXXXXXXXXGTIFLVVVEKMSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWISS 251
                        G +FL V E++ ++D+ Y    ++TT+GYGDK+F T  GR F V W+  
Sbjct:   159 AFCAVGLCVGSGALFLHVFERLDWLDSVYLSVISVTTVGYGDKTFKTVEGRGFAVFWLLL 218

Query:   252 STMTLAQFFLYVAEFNTEK 270
             ST+ +A  FLY+AE   ++
Sbjct:   219 STIAMATLFLYLAEMRIDR 237

GO:0005267 "potassium channel activity" evidence=IEA

GO:0015271 "outward rectifier potassium channel activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0071805 "potassium ion transmembrane transport" evidence=IEA

TAIR|locus:2170413 KCO3 "AT5G46360" [Arabidopsis thaliana (taxid:3702)]

 Score = 263 (97.6 bits), Expect = 1.5e-26, Sum P(2) = 1.5e-26
 Identities = 58/144 (40%), Positives = 87/144 (60%)

Query:   206 FLVV--VEKMSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWISSSTMTLAQFFLYV 263
             FL+V  V K+ ++D+F      +TT+G+GD++F+T  G     VW+  ST+ +A+ FL++
Sbjct:   114 FLIVHFVVKIGWLDSFCFSVMMVTTVGFGDRAFNTWLGTFLAAVWLLVSTLAVARAFLFL 173

Query:   264 AEFNTEKRQKALVNWVLTRKMTHVDLEAADIDEDGVVSAAEFIIYKLKEMGKISQEDIAL 323
             A+   +KR +     VL   ++     AADID DG +S AEF IYKLK+M KI+QED   
Sbjct:   174 ADARADKRNRERAKKVLGESISISQFFAADIDNDGRLSLAEFAIYKLKQMEKITQEDFIQ 233

Query:   324 VMEEFQDLDFDQSGTLSPSDLFLA 347
             +  +F  LD  QSG ++  DL  A
Sbjct:   234 ICNQFDKLDRTQSGRITLVDLTTA 257

GO:0005509 "calcium ion binding" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0015271 "outward rectifier potassium channel activity" evidence=ISS

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0051260 "protein homooligomerization" evidence=IPI

GO:0006863 "purine nucleobase transport" evidence=RCA

UNIPROTKB|Q8E842 Q8E842 "Potassium/ion transporter, voltage-gated ion channel (VIC) superfamily" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 132 (51.5 bits), Expect = 3.7e-08, P = 3.7e-08
 Identities = 28/72 (38%), Positives = 46/72 (63%)

Query:    70 RVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKL 129
             R+L++L   +  GS  FY   S +EG      +D++YF ++TM+T+GYGDLVP + +SK+
Sbjct:    26 RILLFLLVTILIGSTLFY---SSVEGWSK---VDALYFSVMTMSTIGYGDLVPTTDMSKI 79

Query:   130 LSCAFVFTGMGL 141
              +  F F  +G+
Sbjct:    80 FTIIFSFLSIGI 91

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SO_A0098 SO_A0098 "potassium/ion transporter, voltage-gated ion channel (VIC) superfamily" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 132 (51.5 bits), Expect = 3.7e-08, P = 3.7e-08
 Identities = 28/72 (38%), Positives = 46/72 (63%)

Query:    70 RVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKL 129
             R+L++L   +  GS  FY   S +EG      +D++YF ++TM+T+GYGDLVP + +SK+
Sbjct:    26 RILLFLLVTILIGSTLFY---SSVEGWSK---VDALYFSVMTMSTIGYGDLVPTTDMSKI 79

Query:   130 LSCAFVFTGMGL 141
              +  F F  +G+
Sbjct:    80 FTIIFSFLSIGI 91

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q850M0	KCO1_ORYSJ	No assigned EC number	0.5584	0.9802	1.0	yes	no
Q8LBL1	TPK1_ARATH	No assigned EC number	0.6505	0.8163	0.7961	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	354
pfam07885	74	pfam07885, Ion_trans_2, Ion channel	1e-13
pfam07885	74	pfam07885, Ion_trans_2, Ion channel	5e-10
PRK10537	393	PRK10537, PRK10537, voltage-gated potassium channe	1e-05
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	0.002
cd00051	63	cd00051, EFh, EF-hand, calcium binding motif; A di	0.003

>gnl|CDD|219619 pfam07885, Ion_trans_2, Ion channel

 Score = 64.9 bits (159), Expect = 1e-13
 Identities = 24/78 (30%), Positives = 45/78 (57%), Gaps = 4/78 (5%)

Query: 73  VYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSC 132
           + L   L  G++ +Y++  +  G    + LD++YF  VT+TT+GYGD+VP +   +L + 
Sbjct: 1   ILLLLVLIFGTV-YYSLEEEGWGW---DFLDALYFSFVTLTTIGYGDIVPLTDAGRLFTI 56

Query: 133 AFVFTGMGLVGMFLSKAA 150
            ++  G+ L  +FL+   
Sbjct: 57  IYILIGIPLFLLFLAVLG 74

This family includes the two membrane helix type ion channels found in bacteria. Length = 74

>gnl|CDD|219619 pfam07885, Ion_trans_2, Ion channel

 Score = 54.9 bits (133), Expect = 5e-10
 Identities = 22/74 (29%), Positives = 32/74 (43%)

Query: 191 IMLVLELVLILVGTIFLVVVEKMSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWIS 250
           I+L+L L+   V            F+DA Y    T+TT+GYGD    T  GR F +++I 
Sbjct: 1   ILLLLVLIFGTVYYSLEEEGWGWDFLDALYFSFVTLTTIGYGDIVPLTDAGRLFTIIYIL 60

Query: 251 SSTMTLAQFFLYVA 264
                   F   + 
Sbjct: 61  IGIPLFLLFLAVLG 74

This family includes the two membrane helix type ion channels found in bacteria. Length = 74

>gnl|CDD|236711 PRK10537, PRK10537, voltage-gated potassium channel; Provisional

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 26/65 (40%), Positives = 34/65 (52%), Gaps = 15/65 (23%)

Query: 75  LAAYLGGGSLSFYAV----------NSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNS 124
           L A +   SL FY+           +  IE L T     + YF IVTM+TVGYGD+VP S
Sbjct: 138 LFAVISITSLLFYSTFGALYLGDGFSPPIESLST-----AFYFSIVTMSTVGYGDIVPVS 192

Query: 125 VVSKL 129
             ++L
Sbjct: 193 ESARL 197

Length = 393

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 39.5 bits (92), Expect = 0.002
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 8/64 (12%)

Query: 104 SIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQEILLVK 163
           +IY+ I TMTTVGYGDL   + +  +    ++   +GL          YL+     L+V+
Sbjct: 254 AIYWSITTMTTVGYGDLHAVNTIEMIFIIFYMLFNLGLTA--------YLIGNMTNLVVE 305

Query: 164 ALHR 167
              R
Sbjct: 306 GTRR 309

Length = 823

>gnl|CDD|238008 cd00051, EFh, EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands

 Score = 35.2 bits (82), Expect = 0.003
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 5/53 (9%)

Query: 293 DIDEDGVVSAAEFIIYKLKEMG-KISQEDIALVMEEFQDLDFDQSGTLSPSDL 344
           D D DG +SA E     LK +G  +S+E+I  ++ E    D D  G +   + 
Sbjct: 10  DKDGDGTISADELKAA-LKSLGEGLSEEEIDEMIREV---DKDGDGKIDFEEF 58

Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers. Length = 63

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	354
KOG4404	350	consensus Tandem pore domain K+ channel TASK3/THIK	99.97
KOG1418	433	consensus Tandem pore domain K+ channel [Inorganic	99.91
PF07885	79	Ion_trans_2: Ion channel; InterPro: IPR013099 This	99.6
PF07885	79	Ion_trans_2: Ion channel; InterPro: IPR013099 This	99.59
KOG3713	477	consensus Voltage-gated K+ channel KCNB/KCNC [Inor	99.54
KOG3713	477	consensus Voltage-gated K+ channel KCNB/KCNC [Inor	99.51
PRK10537	393	voltage-gated potassium channel; Provisional	99.48
KOG1419	654	consensus Voltage-gated K+ channel KCNQ [Inorganic	99.38
KOG1419	654	consensus Voltage-gated K+ channel KCNQ [Inorganic	99.3
KOG1545	507	consensus Voltage-gated shaker-like K+ channel KCN	99.25
KOG1545	507	consensus Voltage-gated shaker-like K+ channel KCN	99.24
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.21
KOG4404	350	consensus Tandem pore domain K+ channel TASK3/THIK	99.2
PRK10537	393	voltage-gated potassium channel; Provisional	99.2
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.13
KOG4390	632	consensus Voltage-gated A-type K+ channel KCND [In	99.04
KOG1418	433	consensus Tandem pore domain K+ channel [Inorganic	98.89
KOG1420	1103	consensus Ca2+-activated K+ channel Slowpoke, alph	98.86
KOG1420	1103	consensus Ca2+-activated K+ channel Slowpoke, alph	98.85
KOG4390	632	consensus Voltage-gated A-type K+ channel KCND [In	98.76
KOG3684	489	consensus Ca2+-activated K+ channel proteins (inte	98.73
KOG0498	727	consensus K+-channel ERG and related proteins, con	98.6
KOG3684	489	consensus Ca2+-activated K+ channel proteins (inte	98.59
KOG0498	727	consensus K+-channel ERG and related proteins, con	98.56
KOG3193	1087	consensus K+ channel subunit [Inorganic ion transp	98.35
PF01007	336	IRK: Inward rectifier potassium channel; InterPro:	98.18
KOG0501	971	consensus K+-channel KCNQ [Inorganic ion transport	98.12
KOG0501	971	consensus K+-channel KCNQ [Inorganic ion transport	98.06
PF01007	336	IRK: Inward rectifier potassium channel; InterPro:	97.91
KOG3193	1087	consensus K+ channel subunit [Inorganic ion transp	97.78
TIGR00933	390	2a38 potassium uptake protein, TrkH family. The pr	97.54
PRK10750	483	potassium transporter; Provisional	97.15
KOG3827	400	consensus Inward rectifier K+ channel [Inorganic i	97.09
PRK05482	559	potassium-transporting ATPase subunit A; Provision	96.92
PF00520	200	Ion_trans: Ion transport protein calcium channel s	96.9
KOG0500	536	consensus Cyclic nucleotide-gated cation channel C	96.84
TIGR00933	390	2a38 potassium uptake protein, TrkH family. The pr	96.75
KOG0500	536	consensus Cyclic nucleotide-gated cation channel C	96.74
KOG3827	400	consensus Inward rectifier K+ channel [Inorganic i	96.56
PRK10750	483	potassium transporter; Provisional	96.46
COG0168	499	TrkG Trk-type K+ transport systems, membrane compo	96.38
PF02386	354	TrkH: Cation transport protein; InterPro: IPR00344	96.35
KOG0499	815	consensus Cyclic nucleotide-gated cation channel C	96.13
KOG0499	815	consensus Cyclic nucleotide-gated cation channel C	96.04
PF00520	200	Ion_trans: Ion transport protein calcium channel s	96.04
TIGR00934	800	2a38euk potassium uptake protein, Trk family. The	94.59
PF00060	148	Lig_chan: Ligand-gated ion channel; InterPro: IPR0	94.11
KOG0027	151	consensus Calmodulin and related proteins (EF-Hand	94.11
PF13499	66	EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A	94.03
PF13202	25	EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ	93.75
PF00060	148	Lig_chan: Ligand-gated ion channel; InterPro: IPR0	93.32
PF00036	29	EF-hand_1: EF hand; InterPro: IPR018248 Many calci	92.88
PRK05702	359	flhB flagellar biosynthesis protein FlhB; Reviewed	92.04
PF02386	354	TrkH: Cation transport protein; InterPro: IPR00344	92.0
TIGR00934	800	2a38euk potassium uptake protein, Trk family. The	91.26
PF13405	31	EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J	90.22
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	90.06
PRK12721	349	secretion system apparatus protein SsaU; Reviewed	89.23
PRK13109	358	flhB flagellar biosynthesis protein FlhB; Reviewed	88.92
KOG4440	993	consensus NMDA selective glutamate-gated ion chann	88.76
PRK09108	353	type III secretion system protein HrcU; Validated	88.48
COG0168	499	TrkG Trk-type K+ transport systems, membrane compo	87.96
smart00027	96	EH Eps15 homology domain. Pair of EF hand motifs t	87.65
PRK12468	386	flhB flagellar biosynthesis protein FlhB; Reviewed	87.14
TIGR00328	347	flhB flagellar biosynthetic protein FlhB. FlhB and	86.72
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	86.24
TIGR01404	342	FlhB_rel_III type III secretion protein, YscU/HrpY	85.56
PRK06298	356	type III secretion system protein; Validated	85.55
KOG1052	656	consensus Glutamate-gated kainate-type ion channel	85.09
KOG1052	656	consensus Glutamate-gated kainate-type ion channel	84.81
PF13833	54	EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A	84.76
KOG0031	171	consensus Myosin regulatory light chain, EF-Hand p	83.52
KOG1053	1258	consensus Glutamate-gated NMDA-type ion channel re	83.33
PF13499	66	EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A	83.3
PLN03223	1634	Polycystin cation channel protein; Provisional	82.76
KOG0044	193	consensus Ca2+ sensor (EF-Hand superfamily) [Signa	82.6
cd05026	93	S-100Z S-100Z: S-100Z domain found in proteins sim	81.76
PTZ00183	158	centrin; Provisional	81.67
PRK12772	609	bifunctional flagellar biosynthesis protein FliR/F	81.47
PRK05482	559	potassium-transporting ATPase subunit A; Provision	81.05
cd00052	67	EH Eps15 homology domain; found in proteins implic	80.12

>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]

Probab=99.97  E-value=1.4e-30  Score=237.46  Aligned_cols=194  Identities=20%  Similarity=0.281  Sum_probs=155.5

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHhhhcc---------------------------------------cCCCcCCchhhh
Q 047952           65 RPNFKRVLVYLAAYLGGGSLSFYAVNSQI---------------------------------------EGLKTNEILDSI  105 (354)
Q Consensus        65 ~~~~~~~~~~l~~~l~~g~~~~~~~e~~~---------------------------------------~~~~~~~~~~a~  105 (354)
                      ......+++..+.|+++|+.+|-..|.+.                                       ....-|+|..||
T Consensus         6 nvR~l~Livct~tYLLvGAaVFdaLEse~E~~~r~~l~~~~~~~~~kyn~s~~d~r~~er~i~~s~ph~ag~qWkF~GaF   85 (350)
T KOG4404|consen    6 NVRTLLLIVCTFTYLLVGAAVFDALESENEARERERLERRLANLKRKYNLSEEDYRELERVILKSEPHKAGPQWKFAGAF   85 (350)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCccccccccccCcce
Confidence            44556677888899999999998887432                                       112239999999


Q ss_pred             hhhhhhhcccccCccccCCccchhHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhc---cccCCccchhhhhh
Q 047952          106 YFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQEILLVKALHRY---QKVGPTDILKEIET  182 (354)
Q Consensus       106 yf~~~t~tTvGyGdi~P~t~~~r~~~~~~~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~  182 (354)
                      ||+.+.+||||||...|.|..||+||++|+++|+++..++++.+++.+..-... ++++.++.   +...+         
T Consensus        86 YFa~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~lvmFqs~gERlnt~~ay-il~~~r~~~~~r~~~~---------  155 (350)
T KOG4404|consen   86 YFATTVITTIGYGHSTPSTDGGKAFCMFYALVGIPLTLVMFQSIGERLNTFVAY-ILRRCRRRLGRRRWDV---------  155 (350)
T ss_pred             EEEEEEEeeeccCCCCCCCcCceehhhhHHHhcCchHHHHHHHHHHHHHHHHHH-HHHHHHHHhccccCCC---------
Confidence            999999999999999999999999999999999999999999999988654433 33333332   11111         


Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCccccceeeeeeecccccCCcccCC--------cCchHHHHHHHHHHHH
Q 047952          183 NKVRYKCIIMLVLELVLILVGTIFLVVVEKMSFVDAFYCVCSTITTLGYGDKSFST--------TGGRAFGVVWISSSTM  254 (354)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~da~yf~~vT~tTVGyGD~~p~t--------~~gr~~~~~~i~~g~~  254 (354)
                       ....-+++.+...+++++.|+.+|+..|+|+|+||+||||||+|||||||.++..        +.++.+..++|++|+.
T Consensus       156 -S~~~l~~i~~~~~~~~i~~gaa~fs~~E~Wsyfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~  234 (350)
T KOG4404|consen  156 -SVYNLVLILFTACILLICCGAAMFSSVEGWSYFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLC  234 (350)
T ss_pred             -cHHHHHHHHHHHHHHHHHhhHHHhhcccCcchhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHH
Confidence             1112334455666778999999999999999999999999999999999999864        3678999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 047952          255 TLAQFFLYVAEFNTE  269 (354)
Q Consensus       255 ~~~~~~~~i~~~~~~  269 (354)
                      +++.+++.++-.+..
T Consensus       235 vi~a~~NllvLrf~t  249 (350)
T KOG4404|consen  235 VIYALLNLLVLRFMT  249 (350)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999988766554

>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]

Probab=99.91  E-value=3.9e-25  Score=217.52  Aligned_cols=167  Identities=25%  Similarity=0.465  Sum_probs=132.4

Q ss_pred             CCCcCCchhhhhhhhhhhcccccCccccCCccchhHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHH------HHhhc
Q 047952           95 GLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQEILLVK------ALHRY  168 (354)
Q Consensus        95 ~~~~~~~~~a~yf~~~t~tTvGyGdi~P~t~~~r~~~~~~~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~  168 (354)
                      ....|+|.+|+||+++++||||||+++|.|..||+++++|+++|++++.++++.+++++.+.......+      ....+
T Consensus       110 ~~~~W~f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~~~~~~~~~~~~~~~~~~~~  189 (433)
T KOG1418|consen  110 DTQQWSFSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLADSLRKLYRRRHVELQRDRIR  189 (433)
T ss_pred             CCcceecchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Confidence            344599999999999999999999999999999999999999999999999999999998766654421      11111


Q ss_pred             cccCC--ccchh--hhhhhh---hhhhHHHHHHHHHHHHHHHHHHHHHHhcCCccccceeeeeeecccccCCcccCCcCc
Q 047952          169 QKVGP--TDILK--EIETNK---VRYKCIIMLVLELVLILVGTIFLVVVEKMSFVDAFYCVCSTITTLGYGDKSFSTTGG  241 (354)
Q Consensus       169 ~~~~~--~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~da~yf~~vT~tTVGyGD~~p~t~~g  241 (354)
                      .....  .....  +.....   .+.++...+.++++++..|+.++...|+|+|++|+||+++|+|||||||++|.+..+
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~w~f~~~~Yf~fisltTIG~GD~vp~~~~~  269 (433)
T KOG1418|consen  190 SNLRRSIGLRNRSVELGIELLDELRFILLLLLGISLVYLSPGSLLFSLQEQWSFIEAFYFSFISLTTIGFGDIVPRTLLG  269 (433)
T ss_pred             hhhhccccchhcccccchhhccCcceehhhhheeeEEEecccceeeeceeceeeEeeeeEEEEEeeeecCCccccCCCcc
Confidence            11110  00000  111111   255666777777788899999999999999999999999999999999999999886


Q ss_pred             h--------HHHHHHHHHHHHHHHHHHH
Q 047952          242 R--------AFGVVWISSSTMTLAQFFL  261 (354)
Q Consensus       242 r--------~~~~~~i~~g~~~~~~~~~  261 (354)
                      +        .+..+++++|...++....
T Consensus       270 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~  297 (433)
T KOG1418|consen  270 RFRREELVDPLASVWILSGLALLALVLL  297 (433)
T ss_pred             eeeccccccchhHHHHHhhhhHHHHHhh
Confidence            6        6899999999999998884

>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []

Probab=99.60  E-value=7.6e-16  Score=116.81  Aligned_cols=73  Identities=37%  Similarity=0.605  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHHHH---HhcCCccccceeeeeeecccccCCcccCCcCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047952          196 ELVLILVGTIFLVV---VEKMSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWISSSTMTLAQFFLYVAEFNT  268 (354)
Q Consensus       196 ~~~~~~~~~~~~~~---~e~~~~~da~yf~~vT~tTVGyGD~~p~t~~gr~~~~~~i~~g~~~~~~~~~~i~~~~~  268 (354)
                      ++.+++.++..++.   .|+|++.|++||+++|+|||||||++|.++.||++++++++.|+.+++++++.+++.++
T Consensus         3 ~~~~l~~~~~~~~~~~~~~~~~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l~   78 (79)
T PF07885_consen    3 LLLVLAFGAIFFYISEGSEKWSFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASVLT   78 (79)
T ss_dssp             HHHHHHHHHHHHHHTTSSSTTSHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeeeHHHHHHHHHHHhcccCCHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            44556677777777   56799999999999999999999999999999999999999999999999999998775

; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....

>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []

Probab=99.59  E-value=4.9e-15  Score=112.36  Aligned_cols=76  Identities=36%  Similarity=0.672  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHHHHhhhcccCCCcCCchhhhhhhhhhhcccccCccccCCccchhHHHHHHHHhHHHHHHhHHHHHHHHH
Q 047952           75 LAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYLV  154 (354)
Q Consensus        75 l~~~l~~g~~~~~~~e~~~~~~~~~~~~~a~yf~~~t~tTvGyGdi~P~t~~~r~~~~~~~l~Gi~~~~~~~~~~~~~~~  154 (354)
                      ++++++.|+..++. ++   +.+.|++.||+||+++|+||+||||++|.++.||++++++++.|++++++.++.+++.+.
T Consensus         3 ~~~~l~~~~~~~~~-~~---~~~~~~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l~   78 (79)
T PF07885_consen    3 LLLVLAFGAIFFYI-SE---GSEKWSFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASVLT   78 (79)
T ss_dssp             HHHHHHHHHHHHHH-TT---SSSTTSHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeeeHHHHHHHHH-HH---hcccCCHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            44555666666655 21   233499999999999999999999999999999999999999999999999999988774

; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....

>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]

Probab=99.54  E-value=4.5e-13  Score=129.87  Aligned_cols=83  Identities=22%  Similarity=0.277  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHHHHHHHHhc-------CCccccceeeeeeecccccCCcccCCcCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 047952          194 VLELVLILVGTIFLVVVEK-------MSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWISSSTMTLAQFFLYVAEF  266 (354)
Q Consensus       194 ~~~~~~~~~~~~~~~~~e~-------~~~~da~yf~~vT~tTVGyGD~~p~t~~gr~~~~~~i~~g~~~~~~~~~~i~~~  266 (354)
                      ++.+.+.++++++| +.|+       .|..-++||+++|||||||||++|.|..||+++...++.|+.++|+.+..+.+.
T Consensus       351 fL~~GI~iFStlvY-~~Ek~~~~~~FtSIPa~~WWaiVTMTTVGYGDm~P~T~~Gklvas~cil~GVLvlAlPItiIv~n  429 (477)
T KOG3713|consen  351 FLAVGIVIFSTLVY-FAEKDEPDTKFTSIPAGFWWAVVTMTTVGYGDMVPVTVLGKLVASLCILCGVLVLALPITIIVNN  429 (477)
T ss_pred             HHHHHHHHHHHHHH-HhhhcCCCCCCccccchhheeeEEEeeecccCccccccchHHHHHHHHHHhHHHhhcchHhHhhh
Confidence            33344444444444 5554       567789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 047952          267 NTEKRQKALVN  277 (354)
Q Consensus       267 ~~~~~~~~~~~  277 (354)
                      |...+++...+
T Consensus       430 F~~~y~~~k~~  440 (477)
T KOG3713|consen  430 FSMYYSELKAR  440 (477)
T ss_pred             HHHHHHHHHHH
Confidence            99866554443

>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]

Probab=99.51  E-value=3.9e-14  Score=137.23  Aligned_cols=89  Identities=26%  Similarity=0.376  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccCCCcCCchhhhhhhhhhhcccccCccccCCccchhHHHHHHHHhHHHHHHhHHHH
Q 047952           70 RVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKA  149 (354)
Q Consensus        70 ~~~~~l~~~l~~g~~~~~~~e~~~~~~~~~~~~~a~yf~~~t~tTvGyGdi~P~t~~~r~~~~~~~l~Gi~~~~~~~~~~  149 (354)
                      .+++++.+-+++.+...|+.|++.+..++.|...++||+++|||||||||++|.|..||+++...++.|+.++++-+..|
T Consensus       347 lLllfL~~GI~iFStlvY~~Ek~~~~~~FtSIPa~~WWaiVTMTTVGYGDm~P~T~~Gklvas~cil~GVLvlAlPItiI  426 (477)
T KOG3713|consen  347 LLLLFLAVGIVIFSTLVYFAEKDEPDTKFTSIPAGFWWAVVTMTTVGYGDMVPVTVLGKLVASLCILCGVLVLALPITII  426 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccchhheeeEEEeeecccCccccccchHHHHHHHHHHhHHHhhcchHhH
Confidence            33333333344445555778887777779999999999999999999999999999999999999999999999988888


Q ss_pred             HHHHHHHHH
Q 047952          150 ADYLVDKQE  158 (354)
Q Consensus       150 ~~~~~~~~~  158 (354)
                      .+-+.+...
T Consensus       427 v~nF~~~y~  435 (477)
T KOG3713|consen  427 VNNFSMYYS  435 (477)
T ss_pred             hhhHHHHHH
Confidence            777765433

>PRK10537 voltage-gated potassium channel; Provisional

Probab=99.48  E-value=1.1e-13  Score=134.99  Aligned_cols=120  Identities=18%  Similarity=0.179  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhc------CCccccceeeeeeecccccCCcccCCcCchHHHHHHHHHHHHHHHHHHHHH
Q 047952          190 IIMLVLELVLILVGTIFLVVVEK------MSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWISSSTMTLAQFFLYV  263 (354)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~e~------~~~~da~yf~~vT~tTVGyGD~~p~t~~gr~~~~~~i~~g~~~~~~~~~~i  263 (354)
                      ...+..+..+++.+.+++++.|+      +++.||+||+++|+|||||||++|.+..||+|++++++.|++++++.++.+
T Consensus       138 l~~~~~~~~l~~~~~~g~~~~~~~f~~~~~s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i  217 (393)
T PRK10537        138 LFAVISITSLLFYSTFGALYLGDGFSPPIESLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAI  217 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccccCcCCCCHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444445556667776666664      799999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHHHHHhccccccchhhhcccCCCccchHHHHHHHHHHcC
Q 047952          264 AEFNTEKRQKALVNWVLTRKMTHVDLEAADIDEDGVVSAAEFIIYKLKEMG  314 (354)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~l~~~g~v~~~e~v~~~l~~~~  314 (354)
                      ...+.+++.++..+....+.+.+   ..--+.|.|++++  .+...|.+.+
T Consensus       218 ~~p~i~~~l~~~~~~~~~~~~~k---~HvII~G~g~lg~--~v~~~L~~~g  263 (393)
T PRK10537        218 FGPVIRGNLKRLVKGRISHMHRK---DHFIICGHSPLAI--NTYLGLRQRG  263 (393)
T ss_pred             HHHHHHHHHHHHHHhhhhhcccC---CeEEEECCChHHH--HHHHHHHHCC
Confidence            88777655433322111111111   1122457777766  6778887766

>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]

Probab=99.38  E-value=1.3e-12  Score=127.23  Aligned_cols=115  Identities=18%  Similarity=0.232  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHHhhccccCCccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhc-----------CCccccceeee
Q 047952          155 DKQEILLVKALHRYQKVGPTDILKEIETNKVRYKCIIMLVLELVLILVGTIFLVVVEK-----------MSFVDAFYCVC  223 (354)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-----------~~~~da~yf~~  223 (354)
                      ..+..+++|.+++.|..+..+++.++--.. +..++.++.+-++.+++.+++.+..|.           -+|.||+||.+
T Consensus       200 slRFlQILRmlr~DRrggTWKLLGSvV~aH-~~ELiTt~YIGFL~LIfsSflVYLaEKd~~~e~~n~~F~TyADALWWG~  278 (654)
T KOG1419|consen  200 SLRFLQILRMLRMDRRGGTWKLLGSVVYAH-SKELITTWYIGFLVLIFSSFLVYLAEKDAQGEGTNDEFPTYADALWWGV  278 (654)
T ss_pred             hhHHHHHHHHHHhhccCchhhhhhhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhHHHHHHhhh
Confidence            334456788888887777777766552111 112222222222333345555556664           57999999999


Q ss_pred             eeecccccCCcccCCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047952          224 STITTLGYGDKSFSTTGGRAFGVVWISSSTMTLAQFFLYVAEFNTEK  270 (354)
Q Consensus       224 vT~tTVGyGD~~p~t~~gr~~~~~~i~~g~~~~~~~~~~i~~~~~~~  270 (354)
                      +|+|||||||.+|.|+.||+++..+.++|+.++++.-+.+.+-|.-+
T Consensus       279 ITltTIGYGDk~P~TWlGr~laa~fsligiSFFALPAGILGSGfALK  325 (654)
T KOG1419|consen  279 ITLTTIGYGDKTPQTWLGRLLAACFSLIGISFFALPAGILGSGFALK  325 (654)
T ss_pred             eeEEeeccCCcCcccchhHHHHHHHHHHHHHHHhcccccccchhhhh
Confidence            99999999999999999999999999999999999999998877653

>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]

Probab=99.30  E-value=4.7e-12  Score=123.53  Aligned_cols=103  Identities=19%  Similarity=0.276  Sum_probs=79.5

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHhhhcc----cCCCcCCchhhhhhhhhhhcccccCccccCCccchhHHHHHHHHhHHH
Q 047952           66 PNFKRVLVYLAAYLGGGSLSFYAVNSQI----EGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGL  141 (354)
Q Consensus        66 ~~~~~~~~~l~~~l~~g~~~~~~~e~~~----~~~~~~~~~~a~yf~~~t~tTvGyGdi~P~t~~~r~~~~~~~l~Gi~~  141 (354)
                      ..+.....+-++.+++.+.+.|+.|.+.    .+.++.+|.||+||..+|+|||||||.+|.|+.||+++..+.++|+.+
T Consensus       231 ~ELiTt~YIGFL~LIfsSflVYLaEKd~~~e~~n~~F~TyADALWWG~ITltTIGYGDk~P~TWlGr~laa~fsligiSF  310 (654)
T KOG1419|consen  231 KELITTWYIGFLVLIFSSFLVYLAEKDAQGEGTNDEFPTYADALWWGVITLTTIGYGDKTPQTWLGRLLAACFSLIGISF  310 (654)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhHHHHHHhhheeEEeeccCCcCcccchhHHHHHHHHHHHHHH
Confidence            3445555566666777788888888653    234678999999999999999999999999999999999999999999


Q ss_pred             HHHhHHHHHHHHH-HHHHHHHHHHHhhc
Q 047952          142 VGMFLSKAADYLV-DKQEILLVKALHRY  168 (354)
Q Consensus       142 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~  168 (354)
                      |++..+.+++-+. +.+++...+..+++
T Consensus       311 FALPAGILGSGfALKVQeq~RQKHf~rr  338 (654)
T KOG1419|consen  311 FALPAGILGSGFALKVQEQHRQKHFNRR  338 (654)
T ss_pred             HhcccccccchhhhhhHHHHHHHHHHhh
Confidence            9999888887553 23333333444333

>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]

Probab=99.25  E-value=2.3e-12  Score=119.86  Aligned_cols=78  Identities=26%  Similarity=0.345  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhc------CCccccceeeeeeecccccCCcccCCcCchHHHHHHHHHHHHHHHHHHHHHHH
Q 047952          192 MLVLELVLILVGTIFLVVVEK------MSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWISSSTMTLAQFFLYVAE  265 (354)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~e~------~~~~da~yf~~vT~tTVGyGD~~p~t~~gr~~~~~~i~~g~~~~~~~~~~i~~  265 (354)
                      ++++++.++++++.+|....+      .+..|||||+++|||||||||.+|.|..||+...++.+.|+..+++.+..+++
T Consensus       365 IFFlfIgviLFsSavYFAEade~~S~F~SIPdaFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTiALPVPVIVs  444 (507)
T KOG1545|consen  365 IFFLFIGVILFSSAVYFAEADEPESHFSSIPDAFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTIALPVPVIVS  444 (507)
T ss_pred             HHHHHHHHHHHhceeeeeecCCCccCCCcCcccceEEEEEEEeeccccceecccCceehhhHHhhhhheEecccccEEEe
Confidence            344444444444444432211      67899999999999999999999999999999999999999999999998887


Q ss_pred             HHHH
Q 047952          266 FNTE  269 (354)
Q Consensus       266 ~~~~  269 (354)
                      -+.-
T Consensus       445 NFny  448 (507)
T KOG1545|consen  445 NFNY  448 (507)
T ss_pred             cccc
Confidence            6653

>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]

Probab=99.24  E-value=1.2e-12  Score=121.79  Aligned_cols=95  Identities=23%  Similarity=0.389  Sum_probs=70.2

Q ss_pred             ChhhhHHhhcCCcchHHHHHHHHHHHHHHHHHH----HHHhhhcccCCCcCCchhhhhhhhhhhcccccCccccCCccch
Q 047952           53 STHLSESLFGKPRPNFKRVLVYLAAYLGGGSLS----FYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSK  128 (354)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~----~~~~e~~~~~~~~~~~~~a~yf~~~t~tTvGyGdi~P~t~~~r  128 (354)
                      .++.+.+-+   +.+++-+.+ +++++.+|.+.    .|+.|.+.....+.+..|||||+++|||||||||.+|.|+.||
T Consensus       346 GLQILGqTl---~aSmrElgL-LIFFlfIgviLFsSavYFAEade~~S~F~SIPdaFWwavVTMTTVGYGDm~P~TvgGK  421 (507)
T KOG1545|consen  346 GLQILGQTL---RASMRELGL-LIFFLFIGVILFSSAVYFAEADEPESHFSSIPDAFWWAVVTMTTVGYGDMVPVTVGGK  421 (507)
T ss_pred             hHHHHHHHH---HHHHHHHHH-HHHHHHHHHHHHhceeeeeecCCCccCCCcCcccceEEEEEEEeeccccceecccCce
Confidence            445555544   444443332 22333344443    3677776677788999999999999999999999999999999


Q ss_pred             hHHHHHHHHhHHHHHHhHHHHHH
Q 047952          129 LLSCAFVFTGMGLVGMFLSKAAD  151 (354)
Q Consensus       129 ~~~~~~~l~Gi~~~~~~~~~~~~  151 (354)
                      ++..+.++.|+..+++-+..+.+
T Consensus       422 IVGslCAiaGVLTiALPVPVIVs  444 (507)
T KOG1545|consen  422 IVGSLCAIAGVLTIALPVPVIVS  444 (507)
T ss_pred             ehhhHHhhhhheEecccccEEEe
Confidence            99999999999998887665554

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.21  E-value=3e-10  Score=121.67  Aligned_cols=57  Identities=23%  Similarity=0.290  Sum_probs=52.8

Q ss_pred             ccccceeeeeeecccccCCcccCCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047952          215 FVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWISSSTMTLAQFFLYVAEFNTEKR  271 (354)
Q Consensus       215 ~~da~yf~~vT~tTVGyGD~~p~t~~gr~~~~~~i~~g~~~~~~~~~~i~~~~~~~~  271 (354)
                      |..|+||+++|+|||||||++|.+..+++|+++++++|++++++.++.+++.+.+..
T Consensus       251 Yi~slYwai~TmtTVGYGDi~p~t~~E~i~~i~~ml~g~~~~a~~ig~i~~li~~~~  307 (823)
T PLN03192        251 YISAIYWSITTMTTVGYGDLHAVNTIEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGT  307 (823)
T ss_pred             HHHHHHHHHHHHhhccCCCcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334799999999999999999999999999999999999999999999999887644

>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]

Probab=99.20  E-value=3.6e-11  Score=110.75  Aligned_cols=76  Identities=24%  Similarity=0.452  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhhcccCCCcCCchhhhhhhhhhhcccccCccccC--------CccchhHHHHHHHHhHHHHH
Q 047952           72 LVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPN--------SVVSKLLSCAFVFTGMGLVG  143 (354)
Q Consensus        72 ~~~l~~~l~~g~~~~~~~e~~~~~~~~~~~~~a~yf~~~t~tTvGyGdi~P~--------t~~~r~~~~~~~l~Gi~~~~  143 (354)
                      ....++.++.|+.+|.-.|+       |+|+||+||||+|+|||||||.++.        .+..+.+..+|+++|+.+++
T Consensus       165 ~~~~~~~i~~gaa~fs~~E~-------Wsyfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~vi~  237 (350)
T KOG4404|consen  165 FTACILLICCGAAMFSSVEG-------WSYFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCVIY  237 (350)
T ss_pred             HHHHHHHHHhhHHHhhcccC-------cchhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHHHHH
Confidence            33445667888888988887       9999999999999999999999985        45778899999999999999


Q ss_pred             HhHHHHHHHHH
Q 047952          144 MFLSKAADYLV  154 (354)
Q Consensus       144 ~~~~~~~~~~~  154 (354)
                      .+++.+.-.+.
T Consensus       238 a~~NllvLrf~  248 (350)
T KOG4404|consen  238 ALLNLLVLRFM  248 (350)
T ss_pred             HHHHHHHHHHH
Confidence            99988765553

>PRK10537 voltage-gated potassium channel; Provisional

Probab=99.20  E-value=8.3e-11  Score=114.95  Aligned_cols=82  Identities=23%  Similarity=0.372  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHHHhhhcccCCCcCCchhhhhhhhhhhcccccCccccCCccchhHHHHHHHHhHHHHHHhHHHHHHHHHHH
Q 047952           77 AYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYLVDK  156 (354)
Q Consensus        77 ~~l~~g~~~~~~~e~~~~~~~~~~~~~a~yf~~~t~tTvGyGdi~P~t~~~r~~~~~~~l~Gi~~~~~~~~~~~~~~~~~  156 (354)
                      ..++.+.+.+++.+++++ +..+++.+|+||+++|+||+||||++|.|+.||++++++++.|+.++++.++.+...+.+.
T Consensus       146 ~l~~~~~~g~~~~~~~f~-~~~~s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~p~i~~  224 (393)
T PRK10537        146 SLLFYSTFGALYLGDGFS-PPIESLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAIFGPVIRG  224 (393)
T ss_pred             HHHHHHHHHHHHHccccC-cCCCCHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555666665443 3458999999999999999999999999999999999999999999999988887766554


Q ss_pred             HHH
Q 047952          157 QEI  159 (354)
Q Consensus       157 ~~~  159 (354)
                      +.+
T Consensus       225 ~l~  227 (393)
T PRK10537        225 NLK  227 (393)
T ss_pred             HHH
Confidence            433

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.13  E-value=2.2e-10  Score=122.60  Aligned_cols=57  Identities=28%  Similarity=0.597  Sum_probs=53.1

Q ss_pred             chhhhhhhhhhhcccccCccccCCccchhHHHHHHHHhHHHHHHhHHHHHHHHHHHH
Q 047952          101 ILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQ  157 (354)
Q Consensus       101 ~~~a~yf~~~t~tTvGyGdi~P~t~~~r~~~~~~~l~Gi~~~~~~~~~~~~~~~~~~  157 (354)
                      |..|+||+++|||||||||++|.|+.+++++++++++|+.++++.++.+++++.+..
T Consensus       251 Yi~slYwai~TmtTVGYGDi~p~t~~E~i~~i~~ml~g~~~~a~~ig~i~~li~~~~  307 (823)
T PLN03192        251 YISAIYWSITTMTTVGYGDLHAVNTIEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGT  307 (823)
T ss_pred             HHHHHHHHHHHHhhccCCCcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666999999999999999999999999999999999999999999999999886543

>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]

Probab=99.04  E-value=7.2e-11  Score=110.95  Aligned_cols=84  Identities=21%  Similarity=0.365  Sum_probs=69.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcCCchhhhhhhhhhhcccccCccccCCccchhHHHHHHHHhHHHHHHhH
Q 047952           67 NFKRVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFL  146 (354)
Q Consensus        67 ~~~~~~~~l~~~l~~g~~~~~~~e~~~~~~~~~~~~~a~yf~~~t~tTvGyGdi~P~t~~~r~~~~~~~l~Gi~~~~~~~  146 (354)
                      .+..+++.+..-+++.+.++++.|...+...+.+...||||.++||||+||||.+|.|..||+|..+..+.|+.++++-+
T Consensus       323 ELGFLlFSLtMAIIIFATvMfYAEKg~~at~FTsIPaaFWYTIVTmTTLGYGDMVp~TIaGKIfGsiCSLSGVLVIALPV  402 (632)
T KOG4390|consen  323 ELGFLLFSLTMAIIIFATVMFYAEKGSSATKFTSIPAAFWYTIVTMTTLGYGDMVPSTIAGKIFGSICSLSGVLVIALPV  402 (632)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHhhhccccccccccCcHhHhhheeeeeeccccccchHHHHHHHhhhhhcccceEEEeccc
Confidence            34444555555566677777788888788888999999999999999999999999999999999999999999888755


Q ss_pred             HHHH
Q 047952          147 SKAA  150 (354)
Q Consensus       147 ~~~~  150 (354)
                      ..+.
T Consensus       403 PvIV  406 (632)
T KOG4390|consen  403 PVIV  406 (632)
T ss_pred             cEEE
Confidence            4433

>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]

Probab=98.89  E-value=2e-09  Score=105.88  Aligned_cols=61  Identities=23%  Similarity=0.399  Sum_probs=57.2

Q ss_pred             cCCccccceeeeeeecccccCCcccCCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047952          212 KMSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWISSSTMTLAQFFLYVAEFNTEKRQ  272 (354)
Q Consensus       212 ~~~~~da~yf~~vT~tTVGyGD~~p~t~~gr~~~~~~i~~g~~~~~~~~~~i~~~~~~~~~  272 (354)
                      .|+|.+|+||+++++||||||+++|.|..||+|+++|.++|+.++.++++.+...+.+.-.
T Consensus       113 ~W~f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~~~~  173 (433)
T KOG1418|consen  113 QWSFSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLADSLR  173 (433)
T ss_pred             ceecchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            3999999999999999999999999999999999999999999999999999988886433

>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.86  E-value=2e-09  Score=105.64  Aligned_cols=99  Identities=14%  Similarity=0.305  Sum_probs=78.3

Q ss_pred             hHHhhcC-CcchHHHHHHHHHHHHHHHHHHHHHhhhccc------CCCcCCchhhhhhhhhhhcccccCccccCCccchh
Q 047952           57 SESLFGK-PRPNFKRVLVYLAAYLGGGSLSFYAVNSQIE------GLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKL  129 (354)
Q Consensus        57 ~~~~~~~-~~~~~~~~~~~l~~~l~~g~~~~~~~e~~~~------~~~~~~~~~a~yf~~~t~tTvGyGdi~P~t~~~r~  129 (354)
                      +..++++ ....+..++-+++...+.++.+.++.|+.-+      +..-.+|.++.||.++||+||||||++..|..||+
T Consensus       238 ylnilktsssirl~qlvsifisvwltaag~ihllensgdp~~~f~n~hrltyw~cvyfl~vtmstvgygdvyc~t~lgrl  317 (1103)
T KOG1420|consen  238 YLNILKTSSSIRLVQLVSIFISVWLTAAGFIHLLENSGDPWENFQNNHRLTYWECVYFLMVTMSTVGYGDVYCKTTLGRL  317 (1103)
T ss_pred             HHHHHhccchhhHHHHHHHHHHHHHhhcceeehhhcCCChhHhccCcccchhhheeeeeEEEeeeccccceeehhhhhHH
Confidence            3333443 4455666666677777778888888885432      23336899999999999999999999999999999


Q ss_pred             HHHHHHHHhHHHHHHhHHHHHHHHHH
Q 047952          130 LSCAFVFTGMGLVGMFLSKAADYLVD  155 (354)
Q Consensus       130 ~~~~~~l~Gi~~~~~~~~~~~~~~~~  155 (354)
                      |.++|++.|+++++..+..+.+.+-.
T Consensus       318 fmvffil~glamfasyvpeiielign  343 (1103)
T KOG1420|consen  318 FMVFFILGGLAMFASYVPEIIELIGN  343 (1103)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHcc
Confidence            99999999999999998888877643

>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.85  E-value=2.9e-09  Score=104.48  Aligned_cols=82  Identities=23%  Similarity=0.421  Sum_probs=71.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhc-------------CCccccceeeeeeecccccCCcccCCcCchHHHHHHHHHHHH
Q 047952          188 KCIIMLVLELVLILVGTIFLVVVEK-------------MSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWISSSTM  254 (354)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~e~-------------~~~~da~yf~~vT~tTVGyGD~~p~t~~gr~~~~~~i~~g~~  254 (354)
                      ++...+.+++..++.++-+.+..|+             .+|+++.||-++||+||||||+...|..||.|.+++++.|++
T Consensus       249 rl~qlvsifisvwltaag~ihllensgdp~~~f~n~hrltyw~cvyfl~vtmstvgygdvyc~t~lgrlfmvffil~gla  328 (1103)
T KOG1420|consen  249 RLVQLVSIFISVWLTAAGFIHLLENSGDPWENFQNNHRLTYWECVYFLMVTMSTVGYGDVYCKTTLGRLFMVFFILGGLA  328 (1103)
T ss_pred             hHHHHHHHHHHHHHhhcceeehhhcCCChhHhccCcccchhhheeeeeEEEeeeccccceeehhhhhHHHHHHHHHHHHH
Confidence            4455667777888888888888875             679999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 047952          255 TLAQFFLYVAEFNTE  269 (354)
Q Consensus       255 ~~~~~~~~i~~~~~~  269 (354)
                      .++..+..+++++-.
T Consensus       329 mfasyvpeiielign  343 (1103)
T KOG1420|consen  329 MFASYVPEIIELIGN  343 (1103)
T ss_pred             HHHhhhHHHHHHHcc
Confidence            999888888877654

>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]

Probab=98.76  E-value=1.1e-09  Score=103.11  Aligned_cols=71  Identities=30%  Similarity=0.387  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHHhc-------CCccccceeeeeeecccccCCcccCCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047952          199 LILVGTIFLVVVEK-------MSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWISSSTMTLAQFFLYVAEFNTE  269 (354)
Q Consensus       199 ~~~~~~~~~~~~e~-------~~~~da~yf~~vT~tTVGyGD~~p~t~~gr~~~~~~i~~g~~~~~~~~~~i~~~~~~  269 (354)
                      .+++.+.++.+.|+       .+...||||+++||||.||||++|.|..||+|..++.+.|+.++++.+..+++-+..
T Consensus       334 AIIIFATvMfYAEKg~~at~FTsIPaaFWYTIVTmTTLGYGDMVp~TIaGKIfGsiCSLSGVLVIALPVPvIVSNFSR  411 (632)
T KOG4390|consen  334 AIIIFATVMFYAEKGSSATKFTSIPAAFWYTIVTMTTLGYGDMVPSTIAGKIFGSICSLSGVLVIALPVPVIVSNFSR  411 (632)
T ss_pred             HHHHHHHHHHhhhccccccccccCcHhHhhheeeeeeccccccchHHHHHHHhhhhhcccceEEEeccccEEEechhH
Confidence            33344444445554       467789999999999999999999999999999999999999999999888777664

>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]

Probab=98.73  E-value=1.5e-07  Score=90.83  Aligned_cols=83  Identities=18%  Similarity=0.305  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc--------CCccccceeeeeeecccccCCcccCCcCchHHHHHHHHHHHHHHHHHH
Q 047952          189 CIIMLVLELVLILVGTIFLVVVEK--------MSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWISSSTMTLAQFF  260 (354)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~e~--------~~~~da~yf~~vT~tTVGyGD~~p~t~~gr~~~~~~i~~g~~~~~~~~  260 (354)
                      ........+.++++.++.+...|.        .+|.+++|+..+|+-+|||||++|.|..||.++++..+.|.++.+.++
T Consensus       254 g~vL~vftl~~Wii~sW~~~~cER~~~~~~~~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sallv  333 (489)
T KOG3684|consen  254 GTVLLVFTLSLWIIASWMLRQCERYHDSQDVTINYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLLV  333 (489)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHhhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHHHH
Confidence            334444556677888888888875        458999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 047952          261 LYVAEFNTEKR  271 (354)
Q Consensus       261 ~~i~~~~~~~~  271 (354)
                      +.++..+...+
T Consensus       334 AvisRKLeLt~  344 (489)
T KOG3684|consen  334 AVIARKLELTK  344 (489)
T ss_pred             HHHHHHHHHHH
Confidence            99987666543

>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.60  E-value=1.9e-07  Score=96.57  Aligned_cols=57  Identities=23%  Similarity=0.426  Sum_probs=53.6

Q ss_pred             CchhhhhhhhhhhcccccCccccCCccchhHHHHHHHHhHHHHHHhHHHHHHHHHHH
Q 047952          100 EILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYLVDK  156 (354)
Q Consensus       100 ~~~~a~yf~~~t~tTvGyGdi~P~t~~~r~~~~~~~l~Gi~~~~~~~~~~~~~~~~~  156 (354)
                      .|..|+||+++||||+|||+.+|.+...++|++++|++|+.+++++++++.+++.+.
T Consensus       294 kY~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~GllL~A~lIGNmt~~iqs~  350 (727)
T KOG0498|consen  294 KYVYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFGLLLFAYLIGNMTALLQSL  350 (727)
T ss_pred             HHHHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHhHHHHHHHHhhHHHhHHHH
Confidence            366799999999999999999999999999999999999999999999999998753

>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]

Probab=98.59  E-value=2.6e-07  Score=89.18  Aligned_cols=90  Identities=20%  Similarity=0.306  Sum_probs=67.3

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHhhhcccC-CCcCCchhhhhhhhhhhcccccCccccCCccchhHHHHHHHHhHHHHHH
Q 047952           66 PNFKRVLVYLAAYLGGGSLSFYAVNSQIEG-LKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGM  144 (354)
Q Consensus        66 ~~~~~~~~~l~~~l~~g~~~~~~~e~~~~~-~~~~~~~~a~yf~~~t~tTvGyGdi~P~t~~~r~~~~~~~l~Gi~~~~~  144 (354)
                      |-..++++.+.+|+ +.+.++...|.+.+. +..-+|.+++|+..+|+.++||||++|.|..||.++++-.++|..+.++
T Consensus       253 Pg~vL~vftl~~Wi-i~sW~~~~cER~~~~~~~~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sal  331 (489)
T KOG3684|consen  253 PGTVLLVFTLSLWI-IASWMLRQCERYHDSQDVTINYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSL  331 (489)
T ss_pred             chHHHHHHHHHHHH-HHHHHHHHHHHHhcchhhHHHHHhhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHH
Confidence            33333344444444 444445555544322 2446799999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHH
Q 047952          145 FLSKAADYLVDK  156 (354)
Q Consensus       145 ~~~~~~~~~~~~  156 (354)
                      +++.++.-+...
T Consensus       332 lvAvisRKLeLt  343 (489)
T KOG3684|consen  332 LVAVIARKLELT  343 (489)
T ss_pred             HHHHHHHHHHHH
Confidence            999998766433

>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.56  E-value=5.7e-08  Score=100.45  Aligned_cols=54  Identities=22%  Similarity=0.309  Sum_probs=51.1

Q ss_pred             cccceeeeeeecccccCCcccCCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047952          216 VDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWISSSTMTLAQFFLYVAEFNTE  269 (354)
Q Consensus       216 ~da~yf~~vT~tTVGyGD~~p~t~~gr~~~~~~i~~g~~~~~~~~~~i~~~~~~  269 (354)
                      .-|+||++.|+|||||||..|.+..-++|++++|++|++++|++++++..++..
T Consensus       296 ~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~GllL~A~lIGNmt~~iqs  349 (727)
T KOG0498|consen  296 VYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFGLLLFAYLIGNMTALLQS  349 (727)
T ss_pred             HHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHhHHHHHHHHhhHHHhHHH
Confidence            347999999999999999999999999999999999999999999999998876

>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]

Probab=98.35  E-value=2.4e-06  Score=84.00  Aligned_cols=83  Identities=18%  Similarity=0.288  Sum_probs=62.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHh-----cCCccccceeeeeeecccccCCcccCCcCchHHHHHHHHHHHHHHHHHHHH
Q 047952          188 KCIIMLVLELVLILVGTIFLVVVE-----KMSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWISSSTMTLAQFFLY  262 (354)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~e-----~~~~~da~yf~~vT~tTVGyGD~~p~t~~gr~~~~~~i~~g~~~~~~~~~~  262 (354)
                      .+.+.+..++.+++.|...+-.+.     ..+.+.++||.++|++||||||.+|.-++.++..+++|...++++---+..
T Consensus       186 ql~ll~s~l~clift~~c~i~h~qra~~k~i~lf~s~y~v~vtfstvgygd~~pd~w~sql~~vi~icval~~ip~q~~~  265 (1087)
T KOG3193|consen  186 QLLLLFSVLACLIFTGMCSIEHLQRARGKRIDLFTSFYFVMVTFSTVGYGDWYPDYWASQLCVVILICVALGLIPKQLDE  265 (1087)
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHccCceeeeeeeEEEEEEEEeeccccccccccchhhHHHHHHHHHHHhccHHHHHH
Confidence            333334444444555555554444     278999999999999999999999999999999999999888887777776


Q ss_pred             HHHHHHHH
Q 047952          263 VAEFNTEK  270 (354)
Q Consensus       263 i~~~~~~~  270 (354)
                      ++..+.|+
T Consensus       266 l~~tw~er  273 (1087)
T KOG3193|consen  266 LGQTWSER  273 (1087)
T ss_pred             HHHHHHHH
Confidence            66666553

>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]

Probab=98.18  E-value=5.3e-06  Score=79.51  Aligned_cols=58  Identities=21%  Similarity=0.305  Sum_probs=48.4

Q ss_pred             CCchhhhhhhhhhhcccccCc--cccCCccchhHHHHHHHHhHHHHHHhHHHHHHHHHHH
Q 047952           99 NEILDSIYFCIVTMTTVGYGD--LVPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYLVDK  156 (354)
Q Consensus        99 ~~~~~a~yf~~~t~tTvGyGd--i~P~t~~~r~~~~~~~l~Gi~~~~~~~~~~~~~~~~~  156 (354)
                      .+|.+||+|++.|+||||||.  +.|..+.+-++..+.+++|+.+.+.+++.+-..+.+.
T Consensus        83 ~~f~~aF~FSveT~tTIGYG~~~~~~~c~~a~~l~~~q~~~g~l~~a~~~Glvfar~srP  142 (336)
T PF01007_consen   83 NSFTSAFLFSVETQTTIGYGSRYPTPECPYAIFLVTIQSLVGLLLDAFMTGLVFARFSRP  142 (336)
T ss_dssp             TTHHHHHHHHHHHHTT---SSSEB-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred             cchhhheeEEEEEEEEeccCCcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            589999999999999999998  6788889999999999999999999998887777543

They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....

>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]

Probab=98.12  E-value=7.9e-06  Score=81.07  Aligned_cols=56  Identities=25%  Similarity=0.542  Sum_probs=52.3

Q ss_pred             CchhhhhhhhhhhcccccCccccCCccchhHHHHHHHHhHHHHHHhHHHHHHHHHH
Q 047952          100 EILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYLVD  155 (354)
Q Consensus       100 ~~~~a~yf~~~t~tTvGyGdi~P~t~~~r~~~~~~~l~Gi~~~~~~~~~~~~~~~~  155 (354)
                      -|..++||.+++|||||||++.|.|...|+|++..|++|-.+.+.+++.++.++.+
T Consensus       423 ~YissLYfTMt~mttvGFGNiA~~TD~EKiF~v~mMii~aLLYAtIFG~vTTI~QQ  478 (971)
T KOG0501|consen  423 AYISSLYFTMTCMTTVGFGNIAPNTDNEKIFGVCMMIIGALLYATIFGHVTTIIQQ  478 (971)
T ss_pred             eehhhhhhhhhhhhcccccccCCCccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            58899999999999999999999999999999999999999999999988887754

>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]

Probab=98.06  E-value=2.9e-05  Score=77.14  Aligned_cols=56  Identities=21%  Similarity=0.432  Sum_probs=52.4

Q ss_pred             ccccceeeeeeecccccCCcccCCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047952          215 FVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWISSSTMTLAQFFLYVAEFNTEK  270 (354)
Q Consensus       215 ~~da~yf~~vT~tTVGyGD~~p~t~~gr~~~~~~i~~g~~~~~~~~~~i~~~~~~~  270 (354)
                      |..++||++.++||||||.+.|.|...++|++.+|++|-.+.+..++.++..+.+.
T Consensus       424 YissLYfTMt~mttvGFGNiA~~TD~EKiF~v~mMii~aLLYAtIFG~vTTI~QQM  479 (971)
T KOG0501|consen  424 YISSLYFTMTCMTTVGFGNIAPNTDNEKIFGVCMMIIGALLYATIFGHVTTIIQQM  479 (971)
T ss_pred             ehhhhhhhhhhhhcccccccCCCccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            66789999999999999999999999999999999999999999999998887764

>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]

Probab=97.91  E-value=1.6e-05  Score=76.25  Aligned_cols=57  Identities=21%  Similarity=0.097  Sum_probs=46.7

Q ss_pred             CCccccceeeeeeecccccCC--cccCCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047952          213 MSFVDAFYCVCSTITTLGYGD--KSFSTTGGRAFGVVWISSSTMTLAQFFLYVAEFNTE  269 (354)
Q Consensus       213 ~~~~da~yf~~vT~tTVGyGD--~~p~t~~gr~~~~~~i~~g~~~~~~~~~~i~~~~~~  269 (354)
                      .+|.+||+|++-|.||||||.  +.|..+.+-++..+-.++|+.+.+.+++.+..-+..
T Consensus        83 ~~f~~aF~FSveT~tTIGYG~~~~~~~c~~a~~l~~~q~~~g~l~~a~~~Glvfar~sr  141 (336)
T PF01007_consen   83 NSFTSAFLFSVETQTTIGYGSRYPTPECPYAIFLVTIQSLVGLLLDAFMTGLVFARFSR  141 (336)
T ss_dssp             TTHHHHHHHHHHHHTT---SSSEB-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             cchhhheeEEEEEEEEeccCCcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            478999999999999999999  567777888888999999999999999998877664

They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....

>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]

Probab=97.78  E-value=2.9e-05  Score=76.59  Aligned_cols=64  Identities=30%  Similarity=0.515  Sum_probs=50.4

Q ss_pred             CCCcCCchhhhhhhhhhhcccccCccccCCccchhHHHHHHHHhHHHHHHhHHHHHHHHHHHHH
Q 047952           95 GLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQE  158 (354)
Q Consensus        95 ~~~~~~~~~a~yf~~~t~tTvGyGdi~P~t~~~r~~~~~~~l~Gi~~~~~~~~~~~~~~~~~~~  158 (354)
                      +....+.+.++||.++|++||||||.+|.-+..++..++.+-+.+.++.--+..++.-..++++
T Consensus       212 ~~k~i~lf~s~y~v~vtfstvgygd~~pd~w~sql~~vi~icval~~ip~q~~~l~~tw~erqk  275 (1087)
T KOG3193|consen  212 RGKRIDLFTSFYFVMVTFSTVGYGDWYPDYWASQLCVVILICVALGLIPKQLDELGQTWSERQK  275 (1087)
T ss_pred             cCceeeeeeeEEEEEEEEeeccccccccccchhhHHHHHHHHHHHhccHHHHHHHHHHHHHHhh
Confidence            3344789999999999999999999999998888888887777777776666666655554443

>TIGR00933 2a38 potassium uptake protein, TrkH family

Probab=97.54  E-value=0.0003  Score=69.28  Aligned_cols=173  Identities=16%  Similarity=0.175  Sum_probs=89.8

Q ss_pred             HHHHHHHHHHHHHHhhhcc--cCCCcCCchhhhhhhhhhhcccccC--ccccCCccchhHHHHHHHHhHHHHHHh--HHH
Q 047952           75 LAAYLGGGSLSFYAVNSQI--EGLKTNEILDSIYFCIVTMTTVGYG--DLVPNSVVSKLLSCAFVFTGMGLVGMF--LSK  148 (354)
Q Consensus        75 l~~~l~~g~~~~~~~e~~~--~~~~~~~~~~a~yf~~~t~tTvGyG--di~P~t~~~r~~~~~~~l~Gi~~~~~~--~~~  148 (354)
                      .++++..+.+.++..|...  .+.....+.++.++..++++|.||.  |..--++..+++.++.|++|-.--+..  +..
T Consensus       204 ~~~l~~~~~i~~~l~~~~~~~~~~~~~~~~~~~f~~~s~~~T~Gfst~d~~~~~~~~~lll~~lMfIGg~~gSTaGGiK~  283 (390)
T TIGR00933       204 TFLLLAIGFILFLLLERGNTLYSYSFGALLLSAFFQSSTLRTAGFSTIDFAALPTATLVLLLLLMFIGGCSGSTAGGIKT  283 (390)
T ss_pred             HHHHHHHHHHHHHHHHHcccccCCCHHHHHHHHHHHHhhccCCCccccChhhcCHHHHHHHHHHHHHcCCCcccCCchHH
Confidence            3334455666666666321  1122245788999999999999996  555456778888888888764332221  111


Q ss_pred             HHHHHHHHHHHHHHHHHhhccccCCccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh----cCCccccceeeee
Q 047952          149 AADYLVDKQEILLVKALHRYQKVGPTDILKEIETNKVRYKCIIMLVLELVLILVGTIFLVVVE----KMSFVDAFYCVCS  224 (354)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e----~~~~~da~yf~~v  224 (354)
                      ..-.+.-+.....+|+.......    ..++++.+.+.......+..++ ++.++.++....|    +.++.|+++=++.
T Consensus       284 ~r~~vl~~~~~~~~~~~~~~~~v----~~~~i~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~fe~~S  358 (390)
T TIGR00933       284 TTFAILLKQVYREIRRGIHPRII----FSRRIGGKTIDKAILISVWSFF-LVFALIFLLSILELISSGYDFLTSLFEVVS  358 (390)
T ss_pred             HHHHHHHHHHHHHHHccCCCceE----EeEEECCeehHHHHHHHHHHHH-HHHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence            11111111111112211111100    1112222222222222111111 1112222333333    7899999999999


Q ss_pred             eecccccCC-c-cc-CCcCchHHHHHHHHHH
Q 047952          225 TITTLGYGD-K-SF-STTGGRAFGVVWISSS  252 (354)
Q Consensus       225 T~tTVGyGD-~-~p-~t~~gr~~~~~~i~~g  252 (354)
                      .++|||.+- + .| -++.+|++.++.|++|
T Consensus       359 a~~tvGls~g~~~~~l~~~~k~il~~~M~~G  389 (390)
T TIGR00933       359 AFGTVGLSVGLTTANLPDAGKLILIVLMFIG  389 (390)
T ss_pred             HhcCcCCCCCCCcccCCHHHHHHHHHHHHcC
Confidence            999998874 2 24 3557899888888766

The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.

>PRK10750 potassium transporter; Provisional

Probab=97.15  E-value=0.002  Score=64.96  Aligned_cols=182  Identities=13%  Similarity=0.064  Sum_probs=93.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcccCCCcCCchhhhhhhhhhhcccccC--ccccCCccchhHHHHHHHHhHHHHHHh
Q 047952           68 FKRVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYG--DLVPNSVVSKLLSCAFVFTGMGLVGMF  145 (354)
Q Consensus        68 ~~~~~~~l~~~l~~g~~~~~~~e~~~~~~~~~~~~~a~yf~~~t~tTvGyG--di~P~t~~~r~~~~~~~l~Gi~~~~~~  145 (354)
                      .+..+.+.++..+++++.++..|.  .++....+.++++.++..+||.||.  |+.--++..+.+.++.|++|=.--+..
T Consensus       274 ~r~~l~~~~~~~~~~~~~l~~~~~--~~~~~~~l~~s~Fq~vS~~tTtGF~t~d~~~w~~~~~~ll~~lMfIGG~~GSTa  351 (483)
T PRK10750        274 FRMFIGVQLTLVVICTLVLWFHNV--YSSALMTLNQAFFQVVSMATTAGFTTDSIARWPLFLPVLLLCSAFIGGCAGSTG  351 (483)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc--ccCHHHHHHHHHHeeeecccCCCCCCCChhhccHHHHHHHHHHHHHcCCcccCc
Confidence            444444444445555555544331  1111134667777777778999997  444445566777777777654433331


Q ss_pred             --HHHHHHHHHHHHHHHHHHHHhhccccCCccch-hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCccccceee
Q 047952          146 --LSKAADYLVDKQEILLVKALHRYQKVGPTDIL-KEIETNKVRYKCIIMLVLELVLILVGTIFLVVVEKMSFVDAFYCV  222 (354)
Q Consensus       146 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~da~yf~  222 (354)
                        +....-.+.-+..+...|+....+...+-++. |.++++ ...+....+++.++.+++++.+. ..++.+..+|+--+
T Consensus       352 GGIKv~R~~vl~~~~~~~l~~~~~P~~V~~v~~~gr~i~~~-~v~~v~~~~~ly~~~~~~~~~~l-~~~g~~~~sA~~~v  429 (483)
T PRK10750        352 GGLKVIRILLLFKQGNRELKRLVHPNAVYSIKLGNRALPER-ILEAVWGFFSAYALVFIVSMLAI-IATGVDDFSAFASV  429 (483)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhcCCCceeeeeECCEECCHH-HHHHHHHHHHHHHHHHHHHHHHH-HHcCCcHHHHHHHH
Confidence              11111111111112222222111111111111 122222 22344444444455555555555 56778889999888


Q ss_pred             eeeecccccCC-cc-----cCCcCchHHHHHHHHHHH
Q 047952          223 CSTITTLGYGD-KS-----FSTTGGRAFGVVWISSST  253 (354)
Q Consensus       223 ~vT~tTVGyGD-~~-----p~t~~gr~~~~~~i~~g~  253 (354)
                      ..++++||.|= .+     .-++.+|++.++.|++|=
T Consensus       430 ~s~l~nvG~s~G~~~~~f~~l~~~~K~il~~~MllGR  466 (483)
T PRK10750        430 VATLNNLGPGLGVVADNFTSMNPVAKWILIANMLFGR  466 (483)
T ss_pred             HHHhcCCCCCchhhccccccCCHHHHHHHHHHHHHHH
Confidence            88888887663 23     334678999999888874

>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]

Probab=97.09  E-value=0.0015  Score=62.34  Aligned_cols=60  Identities=17%  Similarity=0.211  Sum_probs=48.9

Q ss_pred             CCchhhhhhhhhhhcccccCccccC--CccchhHHHHHHHHhHHHHHHhHHHHHHHHHHHHH
Q 047952           99 NEILDSIYFCIVTMTTVGYGDLVPN--SVVSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQE  158 (354)
Q Consensus        99 ~~~~~a~yf~~~t~tTvGyGdi~P~--t~~~r~~~~~~~l~Gi~~~~~~~~~~~~~~~~~~~  158 (354)
                      .+|..||-|++.|=||||||--++.  =|.+-+..++.+++|+.+-+.+++.+-.-+.+..+
T Consensus       111 ~sf~sAFLFSiETQtTIGYG~R~vTeeCP~aI~ll~~Q~I~g~ii~afm~G~i~aKiarPkK  172 (400)
T KOG3827|consen  111 HSFTSAFLFSIETQTTIGYGFRYVTEECPEAIFLLVLQSILGVIINAFMVGAIFAKIARPKK  172 (400)
T ss_pred             cchhhhheeeeeeeeeeeccccccCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh
Confidence            5899999999999999999976665  45677888889999999999888877666654433

>PRK05482 potassium-transporting ATPase subunit A; Provisional

Probab=96.92  E-value=0.0088  Score=60.64  Aligned_cols=190  Identities=16%  Similarity=0.145  Sum_probs=107.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhcccCC--------Cc-CC------chhhhhhhhhhhcccc-cCccccC-Cccchh
Q 047952           67 NFKRVLVYLAAYLGGGSLSFYAVNSQIEGL--------KT-NE------ILDSIYFCIVTMTTVG-YGDLVPN-SVVSKL  129 (354)
Q Consensus        67 ~~~~~~~~l~~~l~~g~~~~~~~e~~~~~~--------~~-~~------~~~a~yf~~~t~tTvG-yGdi~P~-t~~~r~  129 (354)
                      .-+.++....+.++++++.+++.|...++.        +. ..      ...|+|-+++|-||.| +-.+... ++.+.+
T Consensus       280 h~kivl~~~~iL~i~g~~~~~~~E~~~np~l~~l~~~gn~egKE~RfG~~~salF~svTtrtTaG~fNsm~dsltp~~~l  359 (559)
T PRK05482        280 QGWAILAAMLVLFLAGLAVTMWAELQGNPALAALGIDGNMEGKEVRFGIAASALFAVVTTAASTGAVNAMHDSLTPLGGL  359 (559)
T ss_pred             ceehhHHHHHHHHHHHHHHHHHHHccCCcchhhccCCCCcccchhhhhhHHHHHHHHHHhhhhcchHHHHHHhhccHHHH
Confidence            444455556667777888888888431110        00 12      5678888888887888 5544332 778889


Q ss_pred             HHHHHHHHh-HH-------HHH-HhHHHHHHHHHHHHHHHHHHHHhhccccCCccchhhhhhhhhhhhHHHHHHHHHHHH
Q 047952          130 LSCAFVFTG-MG-------LVG-MFLSKAADYLVDKQEILLVKALHRYQKVGPTDILKEIETNKVRYKCIIMLVLELVLI  200 (354)
Q Consensus       130 ~~~~~~l~G-i~-------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (354)
                      +.++.|++| ..       +.. ..+..+.-.+     ...++.    |  .++-.-|+++.+..+......+. ..+++
T Consensus       360 v~m~lMfIG~~~pGGtGgGl~~~~tfaIL~vfi-----~glmvG----r--tpe~~gRkI~~~eik~A~~vilv-~~~lV  427 (559)
T PRK05482        360 VPLLNMQLGEVIFGGVGSGLYGMLVFVILAVFI-----AGLMVG----R--TPEYLGKKIEAREMKLAALAILV-HPLLV  427 (559)
T ss_pred             HHHHHHHhCCCCCccchHhHHHHHHHHHHHHHH-----HhHccC----C--CCeEEccccCHHHHHHHHHHHHH-HHHHH
Confidence            999999987 32       122 1111111111     011111    1  12223345555554444333332 22333


Q ss_pred             HHHH-HHHHH-------Hhc--CCccccceeeeeeecccccC--CcccCCcCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047952          201 LVGT-IFLVV-------VEK--MSFVDAFYCVCSTITTLGYG--DKSFSTTGGRAFGVVWISSSTMTLAQFFLYVAEFNT  268 (354)
Q Consensus       201 ~~~~-~~~~~-------~e~--~~~~da~yf~~vT~tTVGyG--D~~p~t~~gr~~~~~~i~~g~~~~~~~~~~i~~~~~  268 (354)
                      ++++ +....       .|+  ..+.|.+|=......|+|.+  ++.+.++.+++..++.|++|=...-.+.-.++..+.
T Consensus       428 l~~taial~~~~~~~~~~n~g~hgfseiLyE~~SA~~tnGss~gGLt~~t~~~niil~~~M~iGR~Gpit~~lAlAgsla  507 (559)
T PRK05482        428 LVGTALALATPAGRAGISNPGPHGFSEVLYAYTSAAANNGSAFAGLGANTPFWNLTLGIAMLLGRFLPIIPVLAIAGSLA  507 (559)
T ss_pred             HHHHHHHHHhccccccccCCCCCCHHHHHHHHHhhccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3444 23222       232  58899999888888888754  588999999999999999885544433333444443

>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins

Probab=96.90  E-value=0.0024  Score=55.35  Aligned_cols=52  Identities=21%  Similarity=0.468  Sum_probs=41.9

Q ss_pred             cCCchhhhhhhhhhhcccccCccccC-----CccchhHHHH-HHHHhHHHHHHhHHHH
Q 047952           98 TNEILDSIYFCIVTMTTVGYGDLVPN-----SVVSKLLSCA-FVFTGMGLVGMFLSKA  149 (354)
Q Consensus        98 ~~~~~~a~yf~~~t~tTvGyGdi~P~-----t~~~r~~~~~-~~l~Gi~~~~~~~~~~  149 (354)
                      +.+|..|+|+.+.++||.|+||..|.     +..+.++.+. ..+.++.++.++++.+
T Consensus       143 f~~~~~s~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nlliavi  200 (200)
T PF00520_consen  143 FDSFGESLYWLFQTMTGEGWGDVMPSCMSARSWLAVIFFISFIIIVSILLLNLLIAVI  200 (200)
T ss_dssp             HSSHHHHHHHHHHHHTTTTCCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccCCccccccccccccchhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence            36899999999999999999999997     7788888844 4445667777777653

The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....

>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.84  E-value=0.0056  Score=60.33  Aligned_cols=56  Identities=16%  Similarity=0.285  Sum_probs=49.8

Q ss_pred             chhhhhhhhhhhcccccCccccCCccchhHHHHHHHHhHHHHHHhHHHHHHHHHHHH
Q 047952          101 ILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQ  157 (354)
Q Consensus       101 ~~~a~yf~~~t~tTvGyGdi~P~t~~~r~~~~~~~l~Gi~~~~~~~~~~~~~~~~~~  157 (354)
                      |.-++||+.-|+||+| --..|.+...-.|.++=.++|+.+|+.+++.+|+.+....
T Consensus       184 Y~~S~YWStLTlTTiG-e~P~P~t~~ey~F~I~d~LiGvliFAtIvG~VGsmVtnmn  239 (536)
T KOG0500|consen  184 YLYSLYWSTLTLTTIG-EQPPPVTSSEYAFVIVDTLIGVLIFATIVGNVGSMVTNMN  239 (536)
T ss_pred             HHHHHHHHhhhhhhcc-CCCCCCcCchhhHHHHHHHHHHHHHhhhhccHhHHHHhhh
Confidence            4569999999999998 4568889999999999999999999999999999987544

>TIGR00933 2a38 potassium uptake protein, TrkH family

Probab=96.75  E-value=0.0057  Score=60.21  Aligned_cols=150  Identities=14%  Similarity=0.198  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcccCCCcCCchhhhhhhhhhhcccccCcccc------CCccchhHHHHHHHHhHHHHHH
Q 047952           71 VLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVP------NSVVSKLLSCAFVFTGMGLVGM  144 (354)
Q Consensus        71 ~~~~l~~~l~~g~~~~~~~e~~~~~~~~~~~~~a~yf~~~t~tTvGyGdi~P------~t~~~r~~~~~~~l~Gi~~~~~  144 (354)
                      +..+-.+..++++..|+..+      . .++++|++.++.+++|-||.-...      .++...++.++.+++|-.-+..
T Consensus       106 ~~~iy~~lt~l~~~~~~~~g------~-~~~~~Aif~avSa~~taGFs~~~~~~~~~~~~~~i~~v~~~lm~iGg~gF~v  178 (390)
T TIGR00933       106 IFVIYLLGTILLAVRFVLTG------W-MPLFDAIFHSISAFNNGGFSTHSDSSIGYFHDPSVNLVIAFLIILGGLGFTV  178 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHhc------c-hHHHHHHHHHHHHHhcCCcCCCCCcchhhccChHHHHHHHHHHHHHhcCHHH
Confidence            33333344444555555443      1 478999999999999999853322      1333455555555554333332


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccccCCccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhc---------CCc
Q 047952          145 FLSKAADYLVDKQEILLVKALHRYQKVGPTDILKEIETNKVRYKCIIMLVLELVLILVGTIFLVVVEK---------MSF  215 (354)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~---------~~~  215 (354)
                      ....    +.       .   .+ +..  .++.+   ..+.  .+    ...++++..+.+.+...|.         ...
T Consensus       179 ~~~~----~~-------~---~~-~~~--~~l~~---~~~~--~~----~~~~~l~~~~~i~~~l~~~~~~~~~~~~~~~  232 (390)
T TIGR00933       179 HYDV----YL-------L---LR-KRV--FKLSL---DTKV--RL----FVTFLLLAIGFILFLLLERGNTLYSYSFGAL  232 (390)
T ss_pred             HHHH----HH-------H---cc-cCc--ceeec---CccH--HH----HHHHHHHHHHHHHHHHHHHcccccCCCHHHH
Confidence            2211    10       0   00 000  00111   0011  11    1122223344444444441         236


Q ss_pred             cccceeeeeeecccccCCc--ccCCcCchHHHHHHHHHHH
Q 047952          216 VDAFYCVCSTITTLGYGDK--SFSTTGGRAFGVVWISSST  253 (354)
Q Consensus       216 ~da~yf~~vT~tTVGyGD~--~p~t~~gr~~~~~~i~~g~  253 (354)
                      .++.++..++++|.||.-.  .--++..+++.++.|++|-
T Consensus       233 ~~~~f~~~s~~~T~Gfst~d~~~~~~~~~lll~~lMfIGg  272 (390)
T TIGR00933       233 LLSAFFQSSTLRTAGFSTIDFAALPTATLVLLLLLMFIGG  272 (390)
T ss_pred             HHHHHHHHhhccCCCccccChhhcCHHHHHHHHHHHHHcC
Confidence            7888999999999999754  2233456777777777763

The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.

>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.74  E-value=0.0099  Score=58.61  Aligned_cols=55  Identities=22%  Similarity=0.204  Sum_probs=48.0

Q ss_pred             cceeeeeeecccccCCcccCCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047952          218 AFYCVCSTITTLGYGDKSFSTTGGRAFGVVWISSSTMTLAQFFLYVAEFNTEKRQK  273 (354)
Q Consensus       218 a~yf~~vT~tTVGyGD~~p~t~~gr~~~~~~i~~g~~~~~~~~~~i~~~~~~~~~~  273 (354)
                      ++|||..|+||+| --..|.+..--+|.++=.++|+.++|..++.++++++...+.
T Consensus       187 S~YWStLTlTTiG-e~P~P~t~~ey~F~I~d~LiGvliFAtIvG~VGsmVtnmna~  241 (536)
T KOG0500|consen  187 SLYWSTLTLTTIG-EQPPPVTSSEYAFVIVDTLIGVLIFATIVGNVGSMVTNMNAA  241 (536)
T ss_pred             HHHHHhhhhhhcc-CCCCCCcCchhhHHHHHHHHHHHHHhhhhccHhHHHHhhhHH
Confidence            7999999999997 234678888899999999999999999999999999876543

>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]

Probab=96.56  E-value=0.011  Score=56.59  Aligned_cols=58  Identities=21%  Similarity=0.123  Sum_probs=47.2

Q ss_pred             CCccccceeeeeeecccccCCcccCC--cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047952          213 MSFVDAFYCVCSTITTLGYGDKSFST--TGGRAFGVVWISSSTMTLAQFFLYVAEFNTEK  270 (354)
Q Consensus       213 ~~~~da~yf~~vT~tTVGyGD~~p~t--~~gr~~~~~~i~~g~~~~~~~~~~i~~~~~~~  270 (354)
                      .+|..||-|++-|=||||||--.++.  +.+-+..++-.++|+.+-+..++.+...+...
T Consensus       111 ~sf~sAFLFSiETQtTIGYG~R~vTeeCP~aI~ll~~Q~I~g~ii~afm~G~i~aKiarP  170 (400)
T KOG3827|consen  111 HSFTSAFLFSIETQTTIGYGFRYVTEECPEAIFLLVLQSILGVIINAFMVGAIFAKIARP  170 (400)
T ss_pred             cchhhhheeeeeeeeeeeccccccCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            35777899999999999999987665  45667777779999999999998887766654

>PRK10750 potassium transporter; Provisional

Probab=96.46  E-value=0.018  Score=58.19  Aligned_cols=43  Identities=14%  Similarity=0.215  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcccCCCcCCchhhhhhhhhhhcccccC
Q 047952           68 FKRVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYG  118 (354)
Q Consensus        68 ~~~~~~~l~~~l~~g~~~~~~~e~~~~~~~~~~~~~a~yf~~~t~tTvGyG  118 (354)
                      .+.+..+.+.+.++++..++...        .+++||+..++++++|-||.
T Consensus       182 a~~l~~iY~~lT~~~~~ll~~~G--------m~~fdAi~ha~saisTgGFs  224 (483)
T PRK10750        182 AKTLWLIYVLLTVACALALWFAG--------MDAFDAIGHSFSTIAIGGFS  224 (483)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcC--------CcHHHHHHHHHHHHhccCcC
Confidence            44455555566666666665543        68999999999999999984

>COG0168 TrkG Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]

Probab=96.38  E-value=0.037  Score=56.16  Aligned_cols=153  Identities=14%  Similarity=0.209  Sum_probs=77.3

Q ss_pred             CchhhhhhhhhhhcccccC--cccc-----CCccchhHHHHHHHHhHHHHHHh--HHHHHHHHHHHHHHHHHHHHhhccc
Q 047952          100 EILDSIYFCIVTMTTVGYG--DLVP-----NSVVSKLLSCAFVFTGMGLVGMF--LSKAADYLVDKQEILLVKALHRYQK  170 (354)
Q Consensus       100 ~~~~a~yf~~~t~tTvGyG--di~P-----~t~~~r~~~~~~~l~Gi~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  170 (354)
                      ++.++++-+...+++.|+.  |...     -++..+++.++.|++|-.--+..  +..+.-.+.-..-+...++..+.+.
T Consensus       301 ~~~~~~f~~vs~~f~tg~trtgf~~vd~~~~~~~~~~~~~~~MfIGg~~gSTaGGIK~~r~~il~~~~~~~l~~~~~p~~  380 (499)
T COG0168         301 SLRDAFFQSVSAIFQTGFTRTGFNTVDLSQWPPATLVLLMLLMFIGGSPGSTAGGIKTTRFAVLLKALKRELRRLGHPNA  380 (499)
T ss_pred             HHHHHHHhHhHHheecccccCCCcccchhhcChHHHHHHHHHHHHcCCccccccchHHHHHHHHHHHHHHHHHHhcCccc
Confidence            3455555443334444443  2222     56677788888877765443332  2222222211111222222111111


Q ss_pred             cCCccch-hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCccccceeeeeeecccccCCcc--cCCcCc------
Q 047952          171 VGPTDIL-KEIETNKVRYKCIIMLVLELVLILVGTIFLVVVEKMSFVDAFYCVCSTITTLGYGDKS--FSTTGG------  241 (354)
Q Consensus       171 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~da~yf~~vT~tTVGyGD~~--p~t~~g------  241 (354)
                      ..+.++. |++..+ ...+....+++.++++++++......+.-++.|+++=++.++.|||.|==.  +.+..+      
T Consensus       381 v~~~k~~~r~i~~~-~i~~~~~~~~l~~~~~~i~~~~l~~~~~~~~~~~lfEv~SA~gtVGlSlG~t~~~~~~~~~~~~~  459 (499)
T COG0168         381 VISVKIFGRAIDED-TIRKALAFFFLYLLILIIGALILILTGYDPFIDALFEVVSAFGTVGLSLGITGDLASNFALPPLA  459 (499)
T ss_pred             ceeeEEcCccCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHhhcCCCCCCCCCCCccccccCchH
Confidence            1111111 112222 222333444455556666666666666558999999999999999986432  223344      


Q ss_pred             hHHHHHHHHHHH
Q 047952          242 RAFGVVWISSST  253 (354)
Q Consensus       242 r~~~~~~i~~g~  253 (354)
                      |+..++.|++|=
T Consensus       460 K~vli~~M~~GR  471 (499)
T COG0168         460 KLVLIALMLIGR  471 (499)
T ss_pred             HHHHHHHHHhhc
Confidence            888888887773

>PF02386 TrkH: Cation transport protein; InterPro: IPR003445 This family consists of various potassium transport proteins (Trk) and V-type sodium ATP synthase subunit J or translocating ATPase J (3

Probab=96.35  E-value=0.0095  Score=57.84  Aligned_cols=152  Identities=18%  Similarity=0.236  Sum_probs=68.7

Q ss_pred             CCchhhhhhhhhhhcccccC--ccccCCccchhHHHHHHHHhHHHHHHh--HHHHHHHHHHHHHHHHHHHHhhccccCCc
Q 047952           99 NEILDSIYFCIVTMTTVGYG--DLVPNSVVSKLLSCAFVFTGMGLVGMF--LSKAADYLVDKQEILLVKALHRYQKVGPT  174 (354)
Q Consensus        99 ~~~~~a~yf~~~t~tTvGyG--di~P~t~~~r~~~~~~~l~Gi~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (354)
                      .....+.++...+.+|.||.  |+.--++..+++.++.|++|-.-.+..  +....-.+.-+..+...+....+ ...+.
T Consensus       175 ~~~~~~~f~~~s~~rTtGF~t~d~~~~~~~~~~l~~~lM~IGg~~gSTaGGiK~~r~~il~~~~~~~~~~~~p~-~~~~~  253 (354)
T PF02386_consen  175 GSKRLSAFFQVSSLRTTGFSTVDISQWSPFTLLLLIILMFIGGSPGSTAGGIKITRFAILLKSIREIKRLIHPG-AVSPV  253 (354)
T ss_dssp             HHHHHHHHHHHHTTTT----S---SS--THHHHHHHHHTTS-S-TTSS--SS-HHHHHHHHHHHHHHHHHH-SS-S----
T ss_pred             HHHHHHHHHHHhhcCCcccCccChhhCCHHHHHHHHHHHHhcCccccccCCcceehhhHHHhhHHHHHHHhcCC-Cccce
Confidence            34566788888999999997  444446667777777777654433221  11111111111111122222221 11111


Q ss_pred             cch-hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCC-ccccceeeeeeecccccCCcc--cC-CcC---chHHHH
Q 047952          175 DIL-KEIETNKVRYKCIIMLVLELVLILVGTIFLVVVEKMS-FVDAFYCVCSTITTLGYGDKS--FS-TTG---GRAFGV  246 (354)
Q Consensus       175 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-~~da~yf~~vT~tTVGyGD~~--p~-t~~---gr~~~~  246 (354)
                      +.. |.++++..+ +....+++.++.+++++..+...+... +.|+++=++..++|||.+=-.  |. +..   +|++.+
T Consensus       254 ~~~~r~i~~~~v~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lfe~~Sa~gtvGls~G~~~~~~s~~~~~~K~vli  332 (354)
T PF02386_consen  254 RFNGRRISEQTVR-KAFAFFFLYFIIVFISTLLLSLDGLDFSFFDALFEVISAFGTVGLSLGITTPNLSFSGPFSKLVLI  332 (354)
T ss_dssp             -SSS---TTSHHH-HHCCHHHHHHHHHHHHHHHHHHHSS-H--HHHHHHHHHHCTT--S--SSS----SSS-HHHHHHHH
T ss_pred             eecceeechhhhh-hHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcCcCCCCCCCCCCccchhhHHHHHHH
Confidence            111 222222222 333334444555566666666666544 799999999999999876333  32 334   888888


Q ss_pred             HHHHHH
Q 047952          247 VWISSS  252 (354)
Q Consensus       247 ~~i~~g  252 (354)
                      +.|++|
T Consensus       333 ~~M~~G  338 (354)
T PF02386_consen  333 FLMLLG  338 (354)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            888876

6.1.34 from EC). These proteins are involved in active sodium up-take utilizing ATP in the process. TrkH from Escherichia coli is a hydrophobic membrane protein and determines the specificity and kinetics of cation transport by the TrK system in this organism []. This protein interacts with TrkA and requires TrkE for transport activity.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport; PDB: 3PJZ_A.

>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.13  E-value=0.032  Score=56.30  Aligned_cols=80  Identities=21%  Similarity=0.325  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHHHhhh-cccCCCc-------CCchhhhhhhhhhhcccccCccccCCccchhHHHHHHHHhHHHHHHhH
Q 047952           75 LAAYLGGGSLSFYAVNS-QIEGLKT-------NEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFL  146 (354)
Q Consensus        75 l~~~l~~g~~~~~~~e~-~~~~~~~-------~~~~~a~yf~~~t~tTvGyGdi~P~t~~~r~~~~~~~l~Gi~~~~~~~  146 (354)
                      ++..+.+-+++||+... +.-|.+-       ..|.-++||+.-|++||| |.-.|.+...-+|..+--+.|+.+|++++
T Consensus       370 mlyilHinacvYY~~SayqglG~~rWVydg~Gn~YiRCyyfa~kt~~tiG-~~P~P~~~~E~Vf~~~~w~mGVFvFslli  448 (815)
T KOG0499|consen  370 LLYILHINACVYYWASAYQGLGTTRWVYDGEGNEYIRCYYFAVKTLITIG-GLPEPQTLFEIVFQLLNWFMGVFVFSLLI  448 (815)
T ss_pred             HHHHHhhhHHHHHHHHhhcccccceeEEcCCCCceeeehhhHHHHHHHhc-CCCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344455666655542 2222222       478999999999999999 88899888888888887889999999999


Q ss_pred             HHHHHHHHH
Q 047952          147 SKAADYLVD  155 (354)
Q Consensus       147 ~~~~~~~~~  155 (354)
                      +.+.+.+..
T Consensus       449 GQmRDvi~a  457 (815)
T KOG0499|consen  449 GQMRDVIGA  457 (815)
T ss_pred             HHHHHHHhh
Confidence            999988864

>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.04  E-value=0.018  Score=58.10  Aligned_cols=104  Identities=12%  Similarity=0.155  Sum_probs=70.7

Q ss_pred             CCccccceeeeeeecccccCCcccCCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhh
Q 047952          213 MSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWISSSTMTLAQFFLYVAEFNTEKRQKALVNWVLTRKMTHVDLEAA  292 (354)
Q Consensus       213 ~~~~da~yf~~vT~tTVGyGD~~p~t~~gr~~~~~~i~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~l~~~  292 (354)
                      ..|+-++||++-|++|+| |-..|.+..-.+|..+=-+.|+.+++.+++.+-+.+......+.   ..++.|..   ...
T Consensus       402 n~YiRCyyfa~kt~~tiG-~~P~P~~~~E~Vf~~~~w~mGVFvFslliGQmRDvi~aAt~nq~---~fr~~mD~---tl~  474 (815)
T KOG0499|consen  402 NEYIRCYYFAVKTLITIG-GLPEPQTLFEIVFQLLNWFMGVFVFSLLIGQMRDVIGAATANQN---YFRACMDD---TLA  474 (815)
T ss_pred             CceeeehhhHHHHHHHhc-CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHH---HHHHHHHH---HHH
Confidence            578899999999999999 77888887777888888889999999999999887765322111   11333322   112


Q ss_pred             cccCCCc---cc--hHHHHHHHHHHcCCCCHHHHHH
Q 047952          293 DIDEDGV---VS--AAEFIIYKLKEMGKISQEDIAL  323 (354)
Q Consensus       293 ~l~~~g~---v~--~~e~v~~~l~~~~~~~~~~l~~  323 (354)
                      -+++.+.   |.  ...|-.+.+..++.+++.++..
T Consensus       475 ym~~~~i~kevqnRVr~WyeyTW~sQr~LDEs~ll~  510 (815)
T KOG0499|consen  475 YMNNYSIPKEVQNRVRTWYEYTWDSQRMLDESDLLK  510 (815)
T ss_pred             HHHhcCCcHHHHHHHHHHHHhhhhhhccccHHHHHH
Confidence            2222111   11  2347777888888888887744

>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins

Probab=96.04  E-value=0.019  Score=49.61  Aligned_cols=50  Identities=26%  Similarity=0.256  Sum_probs=39.1

Q ss_pred             CCccccceeeeeeecccccCCcccC-----CcCchHHHHH-HHHHHHHHHHHHHHH
Q 047952          213 MSFVDAFYCVCSTITTLGYGDKSFS-----TTGGRAFGVV-WISSSTMTLAQFFLY  262 (354)
Q Consensus       213 ~~~~da~yf~~vT~tTVGyGD~~p~-----t~~gr~~~~~-~i~~g~~~~~~~~~~  262 (354)
                      .++..++|+.+.++||.|+||..|.     +..+.++.+. .++.++.+++++++.
T Consensus       144 ~~~~~s~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nlliav  199 (200)
T PF00520_consen  144 DSFGESLYWLFQTMTGEGWGDVMPSCMSARSWLAVIFFISFIIIVSILLLNLLIAV  199 (200)
T ss_dssp             SSHHHHHHHHHHHHTTTTCCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccCCccccccccccccchhHhHHhhhhhhhHHHHHHHHHHhc
Confidence            4677899999999999999999997     6677887744 455555667776664

The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....

>TIGR00934 2a38euk potassium uptake protein, Trk family

Probab=94.59  E-value=1.3  Score=47.01  Aligned_cols=64  Identities=13%  Similarity=0.171  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhc-----------CCccccceeeeeeecccccCCc--ccCCcCchHHHHHHHHHHHHH
Q 047952          191 IMLVLELVLILVGTIFLVVVEK-----------MSFVDAFYCVCSTITTLGYGDK--SFSTTGGRAFGVVWISSSTMT  255 (354)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~e~-----------~~~~da~yf~~vT~tTVGyGD~--~p~t~~gr~~~~~~i~~g~~~  255 (354)
                      .++...+++++++.++|...|-           ..+.+|++.++.+ =|-||.-+  .-.++...++.+++|++|..=
T Consensus       586 ill~tt~iL~~ig~ilf~lLE~nn~tl~~lp~g~Ril~aLFQSVst-RTAGFntVdls~Lspatlvl~iiLMyIGa~P  662 (800)
T TIGR00934       586 WLFFTLVGLNAIDLILFIILDWGSSVVDGLSKGIKVLNGLFQSVST-RTAGFTVVDLSQLHPAIQVSYMLMMYVSVLP  662 (800)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcCccccccCCHHHHHHHHHHHhccc-ccccccccchHhcChhHHHHHHHHHHhccCC
Confidence            3445556677788888888872           1255677777665 56677632  233456677888888877644

The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. This family is specific for the eukaryotic Trk system.

>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory

Probab=94.11  E-value=0.035  Score=46.22  Aligned_cols=60  Identities=12%  Similarity=0.201  Sum_probs=45.7

Q ss_pred             CCchhhhhhhhhhhcccccCccccCCccchhHHHHHHHHhHHHHHHhHHHHHHHHHHHHHH
Q 047952           99 NEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQEI  159 (354)
Q Consensus        99 ~~~~~a~yf~~~t~tTvGyGdi~P~t~~~r~~~~~~~l~Gi~~~~~~~~~~~~~~~~~~~~  159 (354)
                      .++.+++|+.+.+++. +-++..|.+..+|++.++|.++.+.+.+...+.+++.+...+..
T Consensus        43 ~~~~~~~~~~~~~~~~-q~~~~~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~~~~  102 (148)
T PF00060_consen   43 FSLSNSFWYTFGTLLQ-QGSSIRPRSWSGRILLAFWWLFSLILIASYTANLTSFLTVPKYE  102 (148)
T ss_dssp             HHHHHHHHHCCCCCHH-HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHT
T ss_pred             ccHHHHHHHHHHhhcc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcC
Confidence            5678899998888776 55679999999999999999999999999999999988765443

There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....

>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]

Probab=94.11  E-value=0.068  Score=45.22  Aligned_cols=57  Identities=28%  Similarity=0.336  Sum_probs=45.5

Q ss_pred             hhhcccCCCccchHHHHHHHHHHcCCCCHH--HHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952          290 EAADIDEDGVVSAAEFIIYKLKEMGKISQE--DIALVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       290 ~~~~l~~~g~v~~~e~v~~~l~~~~~~~~~--~l~~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      ...|.+++|.++..||+...-........+  ..+.+.+.|...|.|++|.|+.+++.-
T Consensus        51 ~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD~d~~G~Is~~el~~  109 (151)
T KOG0027|consen   51 KEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEELKEAFRVFDKDGDGFISASELKK  109 (151)
T ss_pred             HHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHHHHHHHHHHccCCCCcCcHHHHHH
Confidence            345667899999999988876665554443  467889999999999999999999764

>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E

Probab=94.03  E-value=0.094  Score=37.37  Aligned_cols=56  Identities=23%  Similarity=0.350  Sum_probs=41.1

Q ss_pred             hhhcccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHH-hhhcCCCCCCccChhhhh
Q 047952          290 EAADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEE-FQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       290 ~~~~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~-f~~ld~~~~g~l~~~d~~  345 (354)
                      ..-|.+++|.++..|+....-.......++++++..+. |...|.|+||.|+.+|..
T Consensus         7 ~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~   63 (66)
T PF13499_consen    7 KKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFL   63 (66)
T ss_dssp             HHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHH
T ss_pred             HHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHh
Confidence            45678899999988766554333334446677665544 999999999999999864

...

>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A

Probab=93.75  E-value=0.036  Score=32.00  Aligned_cols=22  Identities=27%  Similarity=0.495  Sum_probs=18.8

Q ss_pred             HHHHhhhcCCCCCCccChhhhh
Q 047952          324 VMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       324 i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      +.+.|+.+|.|+||.|+.+|+.
T Consensus         1 l~~~F~~~D~d~DG~is~~E~~   22 (25)
T PF13202_consen    1 LKDAFQQFDTDGDGKISFEEFQ   22 (25)
T ss_dssp             HHHHHHHHTTTSSSEEEHHHHH
T ss_pred             CHHHHHHHcCCCCCcCCHHHHH
Confidence            3457999999999999999874

...

>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory

Probab=93.32  E-value=0.05  Score=45.29  Aligned_cols=57  Identities=18%  Similarity=0.239  Sum_probs=44.6

Q ss_pred             CCccccceeeeeeecccccCCcccCCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047952          213 MSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWISSSTMTLAQFFLYVAEFNTEK  270 (354)
Q Consensus       213 ~~~~da~yf~~vT~tTVGyGD~~p~t~~gr~~~~~~i~~g~~~~~~~~~~i~~~~~~~  270 (354)
                      .++.+++|+++.+++. +-++..|.+..+|++..+|.++++++.+...+.+++.++..
T Consensus        43 ~~~~~~~~~~~~~~~~-q~~~~~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~   99 (148)
T PF00060_consen   43 FSLSNSFWYTFGTLLQ-QGSSIRPRSWSGRILLAFWWLFSLILIASYTANLTSFLTVP   99 (148)
T ss_dssp             HHHHHHHHHCCCCCHH-HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred             ccHHHHHHHHHHhhcc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            3467789999988877 56678999999999999999999999999999999998854

There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....

>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand

Probab=92.88  E-value=0.063  Score=32.17  Aligned_cols=23  Identities=22%  Similarity=0.404  Sum_probs=19.8

Q ss_pred             HHHHhhhcCCCCCCccChhhhhh
Q 047952          324 VMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       324 i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      +.+.|+..|.|+||.|+.+|+.-
T Consensus         2 ~~~~F~~~D~d~dG~I~~~Ef~~   24 (29)
T PF00036_consen    2 LKEAFREFDKDGDGKIDFEEFKE   24 (29)
T ss_dssp             HHHHHHHHSTTSSSEEEHHHHHH
T ss_pred             HHHHHHHHCCCCCCcCCHHHHHH
Confidence            46679999999999999999753

This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....

>PRK05702 flhB flagellar biosynthesis protein FlhB; Reviewed

Probab=92.04  E-value=3.8  Score=39.94  Aligned_cols=51  Identities=18%  Similarity=0.249  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhhcccCCC
Q 047952          243 AFGVVWISSSTMTLAQFFLYVAEFNTEKRQKALVNWVLTRKMTHVDLEAADIDEDG  298 (354)
Q Consensus       243 ~~~~~~i~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~l~~~g  298 (354)
                      +...++.++..+++.+++-.+.++..++++     +.++-+|++.|++.+-.+.+|
T Consensus       186 ~~~~~~~l~~~~~~~~~via~~D~~~qr~~-----~~k~lkMskqEVKdE~Ke~EG  236 (359)
T PRK05702        186 ALDLVLKLLLLVVLALLVIAAIDVPFQRWQ-----YLKKLKMTKQEVKDEHKQSEG  236 (359)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhCCCCHHHHHHHHHhccC
Confidence            444444455555555556666777776533     344668888887766555444

>PF02386 TrkH: Cation transport protein; InterPro: IPR003445 This family consists of various potassium transport proteins (Trk) and V-type sodium ATP synthase subunit J or translocating ATPase J (3

Probab=92.00  E-value=0.12  Score=50.09  Aligned_cols=46  Identities=15%  Similarity=0.297  Sum_probs=25.3

Q ss_pred             CCchhhhhhhhhhhcccccCc----cccCC--ccchhHHHHHHHHhHHHHHH
Q 047952           99 NEILDSIYFCIVTMTTVGYGD----LVPNS--VVSKLLSCAFVFTGMGLVGM  144 (354)
Q Consensus        99 ~~~~~a~yf~~~t~tTvGyGd----i~P~t--~~~r~~~~~~~l~Gi~~~~~  144 (354)
                      .++++|++.++.+++|-|+.-    +.|-.  +...++.++.+++|-.-+..
T Consensus        52 ~~~~~aifhs~Sa~~t~GFs~~~~sl~~f~~~~~i~~i~~~lmi~Gg~~F~~  103 (354)
T PF02386_consen   52 MPLFDAIFHSMSAFSTGGFSPFSDSLAPFNSNPFIEIIIIILMILGGLGFPL  103 (354)
T ss_dssp             --SHHHHTTTHHHHTT----SSTTGGGSS---TTHHHHHHHHHHHHTS-HHH
T ss_pred             CcHHHHHHHHHHHHhcCCceecCCceecccccHHHHHHHHHHHHHhcCCHHH
Confidence            578999999999999999832    23332  35556666666655443333

6.1.34 from EC). These proteins are involved in active sodium up-take utilizing ATP in the process. TrkH from Escherichia coli is a hydrophobic membrane protein and determines the specificity and kinetics of cation transport by the TrK system in this organism []. This protein interacts with TrkA and requires TrkE for transport activity.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport; PDB: 3PJZ_A.

>TIGR00934 2a38euk potassium uptake protein, Trk family

Probab=91.26  E-value=0.36  Score=51.05  Aligned_cols=174  Identities=14%  Similarity=0.183  Sum_probs=89.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcc---cCCCc-CCchhhhhhhhhhhcccccC--ccccCCccchhHHHHHHHHhHHHHH
Q 047952           70 RVLVYLAAYLGGGSLSFYAVNSQI---EGLKT-NEILDSIYFCIVTMTTVGYG--DLVPNSVVSKLLSCAFVFTGMGLVG  143 (354)
Q Consensus        70 ~~~~~l~~~l~~g~~~~~~~e~~~---~~~~~-~~~~~a~yf~~~t~tTvGyG--di~P~t~~~r~~~~~~~l~Gi~~~~  143 (354)
                      .+++..+++++++++.|+..|-..   .+-+. ..+.+|++-++++ -|.||.  |+.-.++...++.++.|++|..=++
T Consensus       586 ill~tt~iL~~ig~ilf~lLE~nn~tl~~lp~g~Ril~aLFQSVst-RTAGFntVdls~Lspatlvl~iiLMyIGa~Pta  664 (800)
T TIGR00934       586 WLFFTLVGLNAIDLILFIILDWGSSVVDGLSKGIKVLNGLFQSVST-RTAGFTVVDLSQLHPAIQVSYMLMMYVSVLPLA  664 (800)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcCccccccCCHHHHHHHHHHHhccc-ccccccccchHhcChhHHHHHHHHHHhccCCcc
Confidence            455556677788888888888421   11111 2467777777665 777886  4455577778888888887654433


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHhhccccCCccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhc----------C
Q 047952          144 MFLSKAADYLVDKQEILLVKALHRYQKVGPTDILKEIETNKVRYKCIIMLVLELVLILVGTIFLVVVEK----------M  213 (354)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~----------~  213 (354)
                      ..+... +...+.... .. ..+.++... +...+.+...    .+...+.+.+.+++++.++....|+          .
T Consensus       665 ggIK~T-Tvyee~sLg-i~-~~~g~~~~~-~~~~rsi~~~----~irrqLs~dlw~I~l~~flI~I~E~~~l~~~~~~~f  736 (800)
T TIGR00934       665 ISIRRT-NVYEEQSLG-LY-NEENEEHEG-ESSTKSFIGA----HLRRQLSFDLWYIFLGLFIICICEGRKIQDPDPPNF  736 (800)
T ss_pred             ceeece-eeeheehee-ee-eccCCcccc-ccccccccHH----HHHHHHHHHHHHHHHHHHHHHHhcCccccccccccc
Confidence            322110 000000000 00 001110000 0000111111    1112222234455566667777775          3


Q ss_pred             CccccceeeeeeecccccCCcccC---------CcCchHHHHHHHHHH
Q 047952          214 SFVDAFYCVCSTITTLGYGDKSFS---------TTGGRAFGVVWISSS  252 (354)
Q Consensus       214 ~~~da~yf~~vT~tTVGyGD~~p~---------t~~gr~~~~~~i~~g  252 (354)
                      ++++.++=++.-..|||+.-=.|.         +..||++.++.|+.|
T Consensus       737 s~f~ILFEVVSAyGTVGLSlG~p~~~~SfSg~ls~~sKLVII~vM~~G  784 (800)
T TIGR00934       737 NVFNILFEVVSAYGTVGLSLGYSCSNYSFSGQFTTLSKLVIIAMLIRG  784 (800)
T ss_pred             cHHHHHhhhhhhccceeecCCCCCcccccCCCCCcchHHHHhHHHHcc
Confidence            556667666667777776544332         457888888888766

The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. This family is specific for the eukaryotic Trk system.

>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B

Probab=90.22  E-value=0.16  Score=30.57  Aligned_cols=23  Identities=26%  Similarity=0.338  Sum_probs=19.0

Q ss_pred             HHHHhhhcCCCCCCccChhhhhh
Q 047952          324 VMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       324 i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      +.+.|...|.|+||.|+.+|+.-
T Consensus         2 l~~~F~~~D~d~dG~I~~~el~~   24 (31)
T PF13405_consen    2 LREAFKMFDKDGDGFIDFEELRA   24 (31)
T ss_dssp             HHHHHHHH-TTSSSEEEHHHHHH
T ss_pred             HHHHHHHHCCCCCCcCcHHHHHH
Confidence            56779999999999999999753

...

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=90.06  E-value=15  Score=39.08  Aligned_cols=56  Identities=18%  Similarity=0.136  Sum_probs=34.1

Q ss_pred             Cccccceeeeeee--cccccCCcccCCc-----CchHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 047952          214 SFVDAFYCVCSTI--TTLGYGDKSFSTT-----GGRAFGV-VWISSSTMTLAQFFLYVAEFNTE  269 (354)
Q Consensus       214 ~~~da~yf~~vT~--tTVGyGD~~p~t~-----~gr~~~~-~~i~~g~~~~~~~~~~i~~~~~~  269 (354)
                      +..|++.-.+.|+  .||||||..-...     .+++..+ +.++.-+.++-++++.+++....
T Consensus       586 ~~~ds~~~~~l~lf~ftig~~dl~~~~~~~~~~~~kilfv~y~ilv~ILllNMLIAMMg~Ty~~  649 (782)
T KOG3676|consen  586 NPYDSFSTFLLTLFEFTIGMGDLEACENTDYPVLFKILFVAYMILVTILLLNMLIAMMGNTYET  649 (782)
T ss_pred             ChhhHHHHHHHHHHHHhhhhhhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            3456655555555  6899999865443     3454433 34555666666777777666554

>PRK12721 secretion system apparatus protein SsaU; Reviewed

Probab=89.23  E-value=6.3  Score=38.25  Aligned_cols=51  Identities=10%  Similarity=0.182  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhhcccCCC
Q 047952          243 AFGVVWISSSTMTLAQFFLYVAEFNTEKRQKALVNWVLTRKMTHVDLEAADIDEDG  298 (354)
Q Consensus       243 ~~~~~~i~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~l~~~g  298 (354)
                      +...++.+++.+++.+++-.+.++..++++     +..+-+|++.|++.+-.+.+|
T Consensus       179 ~~~~~~~l~~~~~~~~~via~~D~~~qr~~-----~~k~lkMskqEvKdE~Ke~EG  229 (349)
T PRK12721        179 VSTLIFWLWGGLLACYLVFGILDYSFQRYK-----IMKQLKMSKDDVKQEYKDSEG  229 (349)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHCCCCHHHHHHHHHhccC
Confidence            334444444555555555566777776533     334668888887766555444

>PRK13109 flhB flagellar biosynthesis protein FlhB; Reviewed

Probab=88.92  E-value=8.3  Score=37.53  Aligned_cols=50  Identities=16%  Similarity=0.286  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhhcccCCC
Q 047952          244 FGVVWISSSTMTLAQFFLYVAEFNTEKRQKALVNWVLTRKMTHVDLEAADIDEDG  298 (354)
Q Consensus       244 ~~~~~i~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~l~~~g  298 (354)
                      ...+..+++.++..+++-.+.++..++++     +..+-+|++.|.+.+-.+.+|
T Consensus       189 ~~~~~~l~~~~~~~~~via~~D~~~q~~~-----~~k~lkMSkqEVKdE~Ke~EG  238 (358)
T PRK13109        189 LTVAIRLVSAVAIATIVLVALDLVWARFH-----WRRSLRMTKQEIKDEHKQAEG  238 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHCCCCHHHHHHHHHhccC
Confidence            33334444445555555666777775533     334568888877766555444

>KOG4440 consensus NMDA selective glutamate-gated ion channel receptor subunit GRIN1 [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]

Probab=88.76  E-value=1.1  Score=45.97  Aligned_cols=58  Identities=19%  Similarity=0.352  Sum_probs=53.2

Q ss_pred             CcCCchhhhhhhhhhhcccccCccccCCccchhHHHHHHHHhHHHHHHhHHHHHHHHH
Q 047952           97 KTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYLV  154 (354)
Q Consensus        97 ~~~~~~~a~yf~~~t~tTvGyGdi~P~t~~~r~~~~~~~l~Gi~~~~~~~~~~~~~~~  154 (354)
                      +..++..|+||+--.+..-|-|+-.|.+--.|++.++|+=+.+++++...++++.+++
T Consensus       610 ~alnlssAmWF~WGVLLNSGigEgtPRSfSARvLGmVWaGFaMIiVASYTANLAAFLV  667 (993)
T KOG4440|consen  610 DALNLSSAMWFSWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFLV  667 (993)
T ss_pred             hhcchhhhHHHHhHhhhccccCCCCCcchhHHHHHHHHhhhheeeehhhhhhhhhhee
Confidence            3478999999999999999999999999999999999999999999999999988775

>PRK09108 type III secretion system protein HrcU; Validated

Probab=88.48  E-value=7.6  Score=37.73  Aligned_cols=51  Identities=8%  Similarity=0.210  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhhcccCCC
Q 047952          243 AFGVVWISSSTMTLAQFFLYVAEFNTEKRQKALVNWVLTRKMTHVDLEAADIDEDG  298 (354)
Q Consensus       243 ~~~~~~i~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~l~~~g  298 (354)
                      ++..+..++..+++.+++-.+.++..++++     +..+-||++.|++.+-.+.+|
T Consensus       181 ~~~~~~~l~~~~~~~~~via~~D~~~qr~~-----~~k~lkMSkqEvK~E~K~~EG  231 (353)
T PRK09108        181 LWTVLMKLLAVAAGVFLLVGAADWKIQRWL-----FIRDNRMSKDEVKREHKESEG  231 (353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHCCCCHHHHHHHHHhccC
Confidence            334444444455555555666777775533     334668888887776555444

>COG0168 TrkG Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]

Probab=87.96  E-value=2.6  Score=42.92  Aligned_cols=40  Identities=15%  Similarity=0.326  Sum_probs=26.5

Q ss_pred             CCchhhhhhhhhhhcccccCccccC-------CccchhHHHHHHHHhH
Q 047952           99 NEILDSIYFCIVTMTTVGYGDLVPN-------SVVSKLLSCAFVFTGM  139 (354)
Q Consensus        99 ~~~~~a~yf~~~t~tTvGyGdi~P~-------t~~~r~~~~~~~l~Gi  139 (354)
                      .++.||++.++++++|-||- ..+.       ++.=.+++++++++|=
T Consensus       197 m~~~dAi~hs~Sa~~ngGFS-~~~~Si~~f~~~~~i~~i~~~liI~Gg  243 (499)
T COG0168         197 MPLFDAIFHSMSAFNNGGFS-THDASIGYFNGSPLINLIITILIILGG  243 (499)
T ss_pred             CCHHHHHHHHHHHhhcCCCC-CCcchhhhcccChhHHHHHHHHHHHhc
Confidence            47888999999999999986 4433       2333444555555443

>smart00027 EH Eps15 homology domain

Probab=87.65  E-value=0.57  Score=36.28  Aligned_cols=31  Identities=35%  Similarity=0.369  Sum_probs=27.1

Q ss_pred             CCHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952          316 ISQEDIALVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       316 ~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      ++++++..+.+.|..+|.|++|.|+.+|+.-
T Consensus         4 ls~~~~~~l~~~F~~~D~d~~G~Is~~el~~   34 (96)
T smart00027        4 ISPEDKAKYEQIFRSLDKNQDGTVTGAQAKP   34 (96)
T ss_pred             CCHHHHHHHHHHHHHhCCCCCCeEeHHHHHH
Confidence            5778899999999999999999999998754

Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.

>PRK12468 flhB flagellar biosynthesis protein FlhB; Reviewed

Probab=87.14  E-value=11  Score=37.05  Aligned_cols=43  Identities=12%  Similarity=0.084  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhhcccCCC
Q 047952          251 SSTMTLAQFFLYVAEFNTEKRQKALVNWVLTRKMTHVDLEAADIDEDG  298 (354)
Q Consensus       251 ~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~l~~~g  298 (354)
                      +..+++.+++-.+.+++.++++     +.++-+|++.|.+.+-.+.+|
T Consensus       194 ~~~~~~~~~via~~D~~~qr~~-----~~k~lkMSkqEvKdE~K~~EG  236 (386)
T PRK12468        194 GLVVVLGLSPMVGFDVFYQITS-----HIKKLRMTKQDIRDEFKNQEG  236 (386)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-----HHHHCCCCHHHHHHHHHhccC
Confidence            3334444455556777775532     334567887777666555433

>TIGR00328 flhB flagellar biosynthetic protein FlhB

Probab=86.72  E-value=12  Score=36.19  Aligned_cols=51  Identities=14%  Similarity=0.178  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhhcccCCC
Q 047952          243 AFGVVWISSSTMTLAQFFLYVAEFNTEKRQKALVNWVLTRKMTHVDLEAADIDEDG  298 (354)
Q Consensus       243 ~~~~~~i~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~l~~~g  298 (354)
                      +...++.++..+++++++-.+.++..++++     +.++-+|++.|++.+-.+.+|
T Consensus       179 ~~~~~~~l~~~~~~~~~via~~D~~~qr~~-----~~k~lrMskqEVKdE~K~~EG  229 (347)
T TIGR00328       179 FLDIAKSLLILVLLLLLVIAVFDYFFQRWQ-----YIKSLKMTKQEVKDELKQSEG  229 (347)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhCCCCHHHHHHHHHhccC
Confidence            334444444455555555666777775532     334668888887776655444

FlhB and its functionally equivalent orthologs, from among a larger superfamily of proteins involved in type III protein export systems, are specifically involved in flagellar protein export. The seed members are restricted and the trusted cutoff is set high such that the proteins gathered by this model play roles specifically related to flagellar structures. Full-length homologs scoring below the trusted cutoff are involved in peptide export but not necessarily in the creation of flagella.

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=86.24  E-value=5  Score=42.41  Aligned_cols=90  Identities=23%  Similarity=0.338  Sum_probs=54.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHhhhcccCC-----------CcCCchhhhhhhhhhh--cccccCccccC--C---ccc
Q 047952           66 PNFKRVLVYLAAYLGGGSLSFYAVNSQIEGL-----------KTNEILDSIYFCIVTM--TTVGYGDLVPN--S---VVS  127 (354)
Q Consensus        66 ~~~~~~~~~l~~~l~~g~~~~~~~e~~~~~~-----------~~~~~~~a~yf~~~t~--tTvGyGdi~P~--t---~~~  127 (354)
                      ..+.+++++..++++-.+-.||..-...++.           ...+..|++.-.+.++  .|+||||..-.  +   ..+
T Consensus       541 ~DL~RF~~IY~Vfl~GFsqAfy~if~~~~~~~~~~~~~~~~~~m~~~~ds~~~~~l~lf~ftig~~dl~~~~~~~~~~~~  620 (782)
T KOG3676|consen  541 GDLFRFLLIYLVFLVGFSQAFYSIFQTCDRDSSPNDKNVESNPMCNPYDSFSTFLLTLFEFTIGMGDLEACENTDYPVLF  620 (782)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccccCChhhHHHHHHHHHHHHhhhhhhhhhcccccchHHH
Confidence            3444555555566665566666654333222           2345667655444444  79999997654  3   356


Q ss_pred             hhHHHHHHH-HhHHHHHHhHHHHHHHHHH
Q 047952          128 KLLSCAFVF-TGMGLVGMFLSKAADYLVD  155 (354)
Q Consensus       128 r~~~~~~~l-~Gi~~~~~~~~~~~~~~~~  155 (354)
                      +++.++|++ .-+.++-++|+.+++-..+
T Consensus       621 kilfv~y~ilv~ILllNMLIAMMg~Ty~~  649 (782)
T KOG3676|consen  621 KILFVAYMILVTILLLNMLIAMMGNTYET  649 (782)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            776666666 4566777788888776543

>TIGR01404 FlhB_rel_III type III secretion protein, YscU/HrpY family

Probab=85.56  E-value=12  Score=36.22  Aligned_cols=51  Identities=10%  Similarity=0.089  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhhcccCCC
Q 047952          243 AFGVVWISSSTMTLAQFFLYVAEFNTEKRQKALVNWVLTRKMTHVDLEAADIDEDG  298 (354)
Q Consensus       243 ~~~~~~i~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~l~~~g  298 (354)
                      ++..++.++..+++.+++-.+.++..++++     +..+-+|++.|++.+-.+.+|
T Consensus       178 ~~~~~~~l~~~~~~~~~via~~D~~~qr~~-----~~k~lkMskqEvKdE~Ke~EG  228 (342)
T TIGR01404       178 VGELLKLLILVCLGFFLVVGLADFAFQRYL-----FMKDLKMSKDEVKREYKEQEG  228 (342)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhCCCCHHHHHHHHHhccC
Confidence            344444445555555555666777775532     334668888887776555444

This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FlhB (TIGRFAMs model TIGR00328). This model may not identify all type III secretion system FlhB homologs.

>PRK06298 type III secretion system protein; Validated

Probab=85.55  E-value=14  Score=36.01  Aligned_cols=43  Identities=12%  Similarity=0.247  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhhcccCCC
Q 047952          251 SSTMTLAQFFLYVAEFNTEKRQKALVNWVLTRKMTHVDLEAADIDEDG  298 (354)
Q Consensus       251 ~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~l~~~g  298 (354)
                      +..+++.+++-.+.++..++++     +..+-+|++.|++.+-.+.+|
T Consensus       188 ~~~~~~~~~via~~D~~~qr~~-----~~k~lkMSkqEvKdE~K~~EG  230 (356)
T PRK06298        188 VTSIGIFFLVVAVLDLVYQRHN-----FAKELKMEKFEVKQEFKDTEG  230 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-----HHHHCCCCHHHHHHHHHhccC
Confidence            3333444555556677665432     334668888877766555443

>KOG1052 consensus Glutamate-gated kainate-type ion channel receptor subunit GluR5 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]

Probab=85.09  E-value=2.2  Score=44.91  Aligned_cols=55  Identities=9%  Similarity=0.170  Sum_probs=44.2

Q ss_pred             ccccceeeeeeecccccCCcccCCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047952          215 FVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWISSSTMTLAQFFLYVAEFNTEK  270 (354)
Q Consensus       215 ~~da~yf~~vT~tTVGyGD~~p~t~~gr~~~~~~i~~g~~~~~~~~~~i~~~~~~~  270 (354)
                      ...++|+++.++..-|-+ ..|.+..+|++..+|.++++++.+..++.+++.++..
T Consensus       382 ~~~~~~~~~~~~~~q~~~-~~p~~~~~Rll~~~w~~~~lil~ssYTa~L~a~Lt~~  436 (656)
T KOG1052|consen  382 LLNCLWLTVGSLLQQGSD-EIPRSLSTRLLLGAWWLFVLILISSYTANLTAFLTVP  436 (656)
T ss_pred             cccchhhhhHHHhccCCC-ccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            334455666656666644 8899999999999999999999999999999988854

>KOG1052 consensus Glutamate-gated kainate-type ion channel receptor subunit GluR5 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]

Probab=84.81  E-value=2.9  Score=43.99  Aligned_cols=57  Identities=16%  Similarity=0.317  Sum_probs=48.8

Q ss_pred             cCCchhhhhhhhhhhcccccCccccCCccchhHHHHHHHHhHHHHHHhHHHHHHHHHH
Q 047952           98 TNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYLVD  155 (354)
Q Consensus        98 ~~~~~~a~yf~~~t~tTvGyGdi~P~t~~~r~~~~~~~l~Gi~~~~~~~~~~~~~~~~  155 (354)
                      .|+..+++|+++.++..-|-+ ..|.+..+|++..+|.++++.+.+...+++++.+..
T Consensus       379 ~~~~~~~~~~~~~~~~~q~~~-~~p~~~~~Rll~~~w~~~~lil~ssYTa~L~a~Lt~  435 (656)
T KOG1052|consen  379 LFSLLNCLWLTVGSLLQQGSD-EIPRSLSTRLLLGAWWLFVLILISSYTANLTAFLTV  435 (656)
T ss_pred             EeecccchhhhhHHHhccCCC-ccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            366677888888888887755 999999999999999999999999999998888753

>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A

Probab=84.76  E-value=1.5  Score=29.74  Aligned_cols=45  Identities=29%  Similarity=0.533  Sum_probs=33.6

Q ss_pred             CCccchHHHHHHHHHHcC-C-CCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          297 DGVVSAAEFIIYKLKEMG-K-ISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       297 ~g~v~~~e~v~~~l~~~~-~-~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      +|.++..|+.... ...| . .++++++.   -|...|.|++|.|+.+|+.
T Consensus         2 ~G~i~~~~~~~~l-~~~g~~~~s~~e~~~---l~~~~D~~~~G~I~~~EF~   48 (54)
T PF13833_consen    2 DGKITREEFRRAL-SKLGIKDLSEEEVDR---LFREFDTDGDGYISFDEFI   48 (54)
T ss_dssp             SSEEEHHHHHHHH-HHTTSSSSCHHHHHH---HHHHHTTSSSSSEEHHHHH
T ss_pred             cCEECHHHHHHHH-HHhCCCCCCHHHHHH---HHHhcccCCCCCCCHHHHH
Confidence            5778877777666 6555 4 67777655   5677799999999999865

...

>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]

Probab=83.52  E-value=1  Score=38.12  Aligned_cols=32  Identities=25%  Similarity=0.309  Sum_probs=29.0

Q ss_pred             CCHHHHHHHHHHhhhcCCCCCCccChhhhhhc
Q 047952          316 ISQEDIALVMEEFQDLDFDQSGTLSPSDLFLA  347 (354)
Q Consensus       316 ~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~~  347 (354)
                      .++..|++.++.|.-+|+|.||.|+.+||.-.
T Consensus        26 f~q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~   57 (171)
T KOG0031|consen   26 FDQSQIQEFKEAFNLMDQNRDGFIDKEDLRDM   57 (171)
T ss_pred             hhHHHHHHHHHHHHHHhccCCCcccHHHHHHH
Confidence            46889999999999999999999999998753

>KOG1053 consensus Glutamate-gated NMDA-type ion channel receptor subunit GRIN2A and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]

Probab=83.33  E-value=8.8  Score=41.25  Aligned_cols=57  Identities=14%  Similarity=0.357  Sum_probs=45.3

Q ss_pred             cCCchhhhhhhhhhhcccccCcccc----CCccchhHHHHHHHHhHHHHHHhHHHHHHHHHHHHH
Q 047952           98 TNEILDSIYFCIVTMTTVGYGDLVP----NSVVSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQE  158 (354)
Q Consensus        98 ~~~~~~a~yf~~~t~tTvGyGdi~P----~t~~~r~~~~~~~l~Gi~~~~~~~~~~~~~~~~~~~  158 (354)
                      ..++..|+|.+-.-+    |+..+|    +...+|+...+|+++++.+++..+++++.+++....
T Consensus       607 ~FtigkaiwllwaLv----FnnsVpv~nPKgtTskiMv~VWAfFavifLAsYTANLAAfMIqE~~  667 (1258)
T KOG1053|consen  607 SFTIGKAIWLLWALV----FNNSVPVENPKGTTSKIMVLVWAFFAVIFLASYTANLAAFMIQEEY  667 (1258)
T ss_pred             ceehhhHHHHHHHHH----hCCCcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            467888888665544    566655    466799999999999999999999999998876443

>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E

Probab=83.30  E-value=0.67  Score=32.83  Aligned_cols=24  Identities=29%  Similarity=0.404  Sum_probs=21.2

Q ss_pred             HHHHHhhhcCCCCCCccChhhhhh
Q 047952          323 LVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       323 ~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      ++.+.|..+|.|++|.|+.+|+..
T Consensus         1 ~l~~~F~~~D~d~~G~i~~~el~~   24 (66)
T PF13499_consen    1 RLKEAFKKFDKDGDGYISKEELRR   24 (66)
T ss_dssp             HHHHHHHHHSTTSSSEEEHHHHHH
T ss_pred             CHHHHHHHHcCCccCCCCHHHHHH
Confidence            467889999999999999999865

...

>PLN03223 Polycystin cation channel protein; Provisional

Probab=82.76  E-value=33  Score=38.88  Aligned_cols=31  Identities=10%  Similarity=0.041  Sum_probs=20.2

Q ss_pred             CchHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 047952          240 GGRAFGVVW-ISSSTMTLAQFFLYVAEFNTEK  270 (354)
Q Consensus       240 ~gr~~~~~~-i~~g~~~~~~~~~~i~~~~~~~  270 (354)
                      .|.+|.+.| +++.++++-++++++.+.+.+-
T Consensus      1394 LGPIYFfSFILLV~FILLNMFIAII~DSFsEV 1425 (1634)
T PLN03223       1394 VGMIYFYSYNIFVFMILFNFLLAIICDAFGEV 1425 (1634)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455555444 4456677778888888877764

>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]

Probab=82.60  E-value=2.1  Score=37.90  Aligned_cols=57  Identities=19%  Similarity=0.299  Sum_probs=39.8

Q ss_pred             hhhcccCCCccchHHH---HHHHHHHcCC----CCHHHHHHH-HHHhhhcCCCCCCccChhhhhh
Q 047952          290 EAADIDEDGVVSAAEF---IIYKLKEMGK----ISQEDIALV-MEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       290 ~~~~l~~~g~v~~~e~---v~~~l~~~~~----~~~~~l~~i-~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      ..-|++++|.|++.|.   +.+.+..++.    ..++..++. -.-|...|.|+||.|+.+|...
T Consensus       107 ~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~  171 (193)
T KOG0044|consen  107 RLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIE  171 (193)
T ss_pred             eeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHH
Confidence            5678899999998763   3444555554    223333333 3459999999999999999764

>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z

Probab=81.76  E-value=4.5  Score=31.11  Aligned_cols=51  Identities=14%  Similarity=0.196  Sum_probs=33.7

Q ss_pred             hhcccCCC-ccchHHHHHHHHHH------cCCCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          291 AADIDEDG-VVSAAEFIIYKLKE------MGKISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       291 ~~~l~~~g-~v~~~e~v~~~l~~------~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      .++.+++| .++..|.... +.+      .+..++++++++   +.++|.|+||.++-++..
T Consensus        19 ~dd~dgdg~~Is~~EL~~l-l~~~~~~~~~~~~~~~~v~~i---~~elD~n~dG~Idf~EF~   76 (93)
T cd05026          19 YSGKEGDRYKLSKGELKEL-LQRELTDFLSSQKDPMLVDKI---MNDLDSNKDNEVDFNEFV   76 (93)
T ss_pred             HHccCCCCCEECHHHHHHH-HHHHhHHhcccccCHHHHHHH---HHHhCCCCCCCCCHHHHH
Confidence            45567887 4898776443 333      223455666554   555688999999999854

S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac

>PTZ00183 centrin; Provisional

Probab=81.67  E-value=4.1  Score=33.79  Aligned_cols=54  Identities=17%  Similarity=0.254  Sum_probs=40.5

Q ss_pred             hhhcccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952          290 EAADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       290 ~~~~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      +..|.+++|.++..|+..........++.+++..+   |..+|.|++|.|+.+++.-
T Consensus        97 ~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~---~~~~d~~~~g~i~~~ef~~  150 (158)
T PTZ00183         97 RLFDDDKTGKISLKNLKRVAKELGETITDEELQEM---IDEADRNGDGEISEEEFYR  150 (158)
T ss_pred             HHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHH---HHHhCCCCCCcCcHHHHHH
Confidence            45577899999988877665544456788777765   4566889999999999753

>PRK12772 bifunctional flagellar biosynthesis protein FliR/FlhB; Provisional

Probab=81.47  E-value=27  Score=36.55  Aligned_cols=46  Identities=20%  Similarity=0.247  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhhcccCCC
Q 047952          248 WISSSTMTLAQFFLYVAEFNTEKRQKALVNWVLTRKMTHVDLEAADIDEDG  298 (354)
Q Consensus       248 ~i~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~l~~~g  298 (354)
                      +.++......+.+-.+.++..++++     +.++-||++.|.+.+-.+.+|
T Consensus       447 ~~l~~~~~~~~~via~~D~~~q~~~-----~~k~lkMskqEvK~E~Ke~EG  492 (609)
T PRK12772        447 ISIFFRITLIMIIIAVADYVYQKYQ-----YNKDLRMTKQEVKEEYKQDEG  492 (609)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhCCCCHHHHHHHHHhccC
Confidence            3333444445555556677775533     334668888887777655444

>PRK05482 potassium-transporting ATPase subunit A; Provisional

Probab=81.05  E-value=6.3  Score=40.47  Aligned_cols=52  Identities=15%  Similarity=0.098  Sum_probs=41.1

Q ss_pred             CCchhhhhhhhhhhccccc--CccccCCccchhHHHHHHHHh-HHHHHHhHHHHH
Q 047952           99 NEILDSIYFCIVTMTTVGY--GDLVPNSVVSKLLSCAFVFTG-MGLVGMFLSKAA  150 (354)
Q Consensus        99 ~~~~~a~yf~~~t~tTvGy--Gdi~P~t~~~r~~~~~~~l~G-i~~~~~~~~~~~  150 (354)
                      ..+.+.+|=......|+|.  |.+.+.|+.+++..++.|++| +..+...++..+
T Consensus       450 hgfseiLyE~~SA~~tnGss~gGLt~~t~~~niil~~~M~iGR~Gpit~~lAlAg  504 (559)
T PRK05482        450 HGFSEVLYAYTSAAANNGSAFAGLGANTPFWNLTLGIAMLLGRFLPIIPVLAIAG  504 (559)
T ss_pred             CCHHHHHHHHHhhccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5899999999999999994  568899999999999999987 444444444333

>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction

Probab=80.12  E-value=5.2  Score=27.89  Aligned_cols=50  Identities=26%  Similarity=0.406  Sum_probs=35.6

Q ss_pred             hhcccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          291 AADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       291 ~~~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      ..|.+++|.++..|+... +.+.|. +.++++++   +...|.+++|.++.++..
T Consensus         7 ~~D~~~~G~i~~~el~~~-l~~~g~-~~~~~~~i---~~~~d~~~~g~i~~~ef~   56 (67)
T cd00052           7 SLDPDGDGLISGDEARPF-LGKSGL-PRSVLAQI---WDLADTDKDGKLDKEEFA   56 (67)
T ss_pred             HhCCCCCCcCcHHHHHHH-HHHcCC-CHHHHHHH---HHHhcCCCCCcCCHHHHH
Confidence            345678899998775544 455554 67766665   566788999999998864

The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	354
3beh_A	355	Structure Of A Bacterial Cyclic Nucleotide Regulate		6e-09
3ouf_A	97	Structure Of A K+ Selective Nak Mutant Length = 97		5e-08
3t4z_A	97	Crystal Structure Of Nak2k Channel Y55w Mutant Leng		1e-07
3tet_A	97	Crystal Structure Of Nak2k Channel Y66f Mutant Leng		2e-07
3t4d_A	97	Crystal Structure Of Nak2k Channel Y55f Mutant Leng		2e-07
3tcu_A	97	Crystal Structure Of Nak2k Channel D68e Mutant Leng		2e-07
3t1c_A	97	Crystal Structure Of Nak Channel D66y Mutant Length		2e-07
3t2m_A	97	Crystal Structure Of Nak Channel N68d Mutant Length		1e-06
3vou_A	148	The Crystal Structure Of Nak-Navsulp Chimera Channe		1e-06
3e83_A	96	Crystal Structure Of The The Open Nak Channel Pore		2e-06
2q67_A	114	Crystal Structure Of Nak Channel D66a Mutant Length		3e-06
2q69_A	114	Crystal Structure Of Nak Channel D66n Mutant Length		3e-06
2q6a_A	114	Crystal Structure Of Nak Channel D66e Mutant Length		3e-06
2q68_A	114	Crystal Structure Of Nak Channel D66a, S70e Double		4e-06
2ahy_A	110	Na+ Complex Of The Nak Channel Length = 110		5e-06
4h33_A	137	Crystal Structure Of A Voltage-gated K+ Channel Por		1e-05
2a0l_A	241	Crystal Structure Of Kvap-33h1 Fv Complex Length =		4e-05
1orq_C	223	X-Ray Structure Of A Voltage-Dependent Potassium Ch		6e-05
4hyo_A	91	Crystal Structure Of Mthk Pore Length = 91		4e-04
3k06_A	96	Crystal Structure Of Cng Mimicking Nak Mutant, Nak-		7e-04
3k0d_A	96	Crystal Structure Of Cng Mimicking Nak Mutant, Nak-		8e-04

>pdb|3BEH|A Chain A, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion Channel Length = 355

Iteration: 1
 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 62/114 (54%), Gaps = 13/114 (11%)
Query: 83  SLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLV 142
           +L+ Y +   I+  K   I  ++++ +VT++T GYGD +P S   ++L+ A + +G+G+ 
Sbjct: 144 ALAAYVIERDIQPEKFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIF 203
Query: 143 GMFLS----------KAADYLVDKQEILLVKALHRYQKVGPTDILKEIETNKVR 186
           G++            +  D++ + Q   LV A+  +QK+GP  +++ +   + R
Sbjct: 204 GLWAGILATGFYQEVRRGDFVRNWQ---LVAAVPLFQKLGPAVLVEIVRALRAR 254

>pdb|3OUF|A Chain A, Structure Of A K+ Selective Nak Mutant Length = 97

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 40/60 (66%), Gaps = 3/60 (5%)
Query: 91  SQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAA 150
           S +EGL+    +D++YF +VT+TTVGYGD  P +   K+ +  ++F G+GLV  F+ K A
Sbjct: 26  STVEGLRP---IDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLA 82

>pdb|3T4Z|A Chain A, Crystal Structure Of Nak2k Channel Y55w Mutant Length = 97

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 40/60 (66%), Gaps = 3/60 (5%)
Query: 91  SQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAA 150
           S +EGL+    +D+++F +VT+TTVGYGD  P +   K+ +  ++F G+GLV  F+ K A
Sbjct: 26  STVEGLRP---IDALWFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLA 82

>pdb|3TET|A Chain A, Crystal Structure Of Nak2k Channel Y66f Mutant Length = 97

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 40/60 (66%), Gaps = 3/60 (5%)
Query: 91  SQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAA 150
           S +EGL+    +D++YF +VT+TTVG+GD  P +   K+ +  ++F G+GLV  F+ K A
Sbjct: 26  STVEGLRP---IDALYFSVVTLTTVGFGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLA 82

>pdb|3T4D|A Chain A, Crystal Structure Of Nak2k Channel Y55f Mutant Length = 97

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 40/60 (66%), Gaps = 3/60 (5%)
Query: 91  SQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAA 150
           S +EGL+    +D+++F +VT+TTVGYGD  P +   K+ +  ++F G+GLV  F+ K A
Sbjct: 26  STVEGLRP---IDALFFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLA 82

>pdb|3TCU|A Chain A, Crystal Structure Of Nak2k Channel D68e Mutant Length = 97

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 40/60 (66%), Gaps = 3/60 (5%)
Query: 91  SQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAA 150
           S +EGL+    +D++YF +VT+TTVGYG+  P +   K+ +  ++F G+GLV  F+ K A
Sbjct: 26  STVEGLRP---IDALYFSVVTLTTVGYGEFSPQTDFGKIFTILYIFIGIGLVFGFIHKLA 82

>pdb|3T1C|A Chain A, Crystal Structure Of Nak Channel D66y Mutant Length = 97

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 40/60 (66%), Gaps = 3/60 (5%)
Query: 91  SQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAA 150
           S +EGL+    +D++YF +VT+TTVGYG+  P +   K+ +  ++F G+GLV  F+ K A
Sbjct: 26  STVEGLRP---IDALYFSVVTLTTVGYGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLA 82

>pdb|3T2M|A Chain A, Crystal Structure Of Nak Channel N68d Mutant Length = 97

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 39/60 (65%), Gaps = 3/60 (5%)
Query: 91  SQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAA 150
           S +EGL+    +D++YF +VT+TTVG GD  P +   K+ +  ++F G+GLV  F+ K A
Sbjct: 26  STVEGLRP---IDALYFSVVTLTTVGDGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLA 82

>pdb|3VOU|A Chain A, The Crystal Structure Of Nak-Navsulp Chimera Channel Length = 148

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 39/60 (65%), Gaps = 3/60 (5%)
Query: 91  SQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAA 150
           S +EGL+    LD++YF +VT+TTVG G+  P +   K+ +  ++F G+GLV  F+ K A
Sbjct: 46  STVEGLRP---LDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLA 102

>pdb|3E83|A Chain A, Crystal Structure Of The The Open Nak Channel Pore Length = 96

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 3/60 (5%)
Query: 91  SQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAA 150
           S +EGL+    +D++YF +VT+TTVG G+  P +   K+ +  ++F G+GLV  F+ K A
Sbjct: 25  STVEGLRP---IDALYFSVVTLTTVGDGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLA 81

>pdb|2Q67|A Chain A, Crystal Structure Of Nak Channel D66a Mutant Length = 114

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 3/60 (5%)
Query: 91  SQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAA 150
           S +EGL+    +D++YF +VT+TTVG G+  P +   K+ +  ++F G+GLV  F+ K A
Sbjct: 43  STVEGLRP---IDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLA 99

>pdb|2Q69|A Chain A, Crystal Structure Of Nak Channel D66n Mutant Length = 114

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 3/60 (5%)
Query: 91  SQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAA 150
           S +EGL+    +D++YF +VT+TTVG G+  P +   K+ +  ++F G+GLV  F+ K A
Sbjct: 43  STVEGLRP---IDALYFSVVTLTTVGNGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLA 99

>pdb|2Q6A|A Chain A, Crystal Structure Of Nak Channel D66e Mutant Length = 114

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 3/60 (5%)
Query: 91  SQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAA 150
           S +EGL+    +D++YF +VT+TTVG G+  P +   K+ +  ++F G+GLV  F+ K A
Sbjct: 43  STVEGLRP---IDALYFSVVTLTTVGEGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLA 99

>pdb|2Q68|A Chain A, Crystal Structure Of Nak Channel D66a, S70e Double Mutants Length = 114

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 3/60 (5%)
Query: 91  SQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAA 150
           S +EGL+    +D++YF +VT+TTVG G+  P +   K+ +  ++F G+GLV  F+ K A
Sbjct: 43  STVEGLRP---IDALYFSVVTLTTVGAGNFEPQTDFGKIFTILYIFIGIGLVFGFIHKLA 99

>pdb|2AHY|A Chain A, Na+ Complex Of The Nak Channel Length = 110

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 3/60 (5%)
Query: 91  SQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAA 150
           S +EGL+    +D++YF +VT+TTVG G+  P +   K+ +  ++F G+GLV  F+ K A
Sbjct: 43  STVEGLRP---IDALYFSVVTLTTVGDGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLA 99

>pdb|4H33|A Chain A, Crystal Structure Of A Voltage-gated K+ Channel Pore Module In A Closed State In Lipid Membranes, Tetragonal Crystal Form Length = 137

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 37/62 (59%)
Query: 97  KTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYLVDK 156
           + N   D++++ IVT TTVGYGD+VP + + ++L+   +  G+  +GM  S   ++   K
Sbjct: 40  EINNYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCK 99
Query: 157 QE 158
           + 
Sbjct: 100 KP 101

>pdb|2A0L|A Chain A, Crystal Structure Of Kvap-33h1 Fv Complex Length = 241

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 34/58 (58%)
Query: 82  GSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGM 139
           G+ + Y V           + D++++ +VT TTVGYGD+VP + + K++  A + TG+
Sbjct: 159 GAFAIYIVEYPDPNSSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGI 216

>pdb|1ORQ|C Chain C, X-Ray Structure Of A Voltage-Dependent Potassium Channel In Complex With An Fab Length = 223

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 34/58 (58%)
Query: 82  GSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGM 139
           G+ + Y V           + D++++ +VT TTVGYGD+VP + + K++  A + TG+
Sbjct: 147 GAFAIYIVEYPDPNSSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGI 204

>pdb|4HYO|A Chain A, Crystal Structure Of Mthk Pore Length = 91

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 46/87 (52%), Gaps = 7/87 (8%)
Query: 70  RVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKL 129
           R+L+ + A +  G+  F+ +  +   +       S+Y+  VT+ TVGYGD  P++ +   
Sbjct: 12  RILLLVLAVIIYGTAGFHFIEGESWTV-------SLYWTFVTIATVGYGDYSPHTPLGMY 64
Query: 130 LSCAFVFTGMGLVGMFLSKAADYLVDK 156
            +C  +  G+G   + + +  ++L+++
Sbjct: 65  FTCTLIVLGIGTFAVAVERLLEFLINR 91

>pdb|3K06|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Ntpp, K+ Complex Length = 96

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 4/60 (6%)
Query: 91  SQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAA 150
           S +EGL+    +D++YF +VT+TTVG     P +   K+ +  ++F G+GLV  F+ K A
Sbjct: 26  STVEGLRP---IDALYFSVVTLTTVG-NTPPPQTDFGKIFTILYIFIGIGLVFGFIHKLA 81

>pdb|3K0D|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Etpp, K+ Complex Length = 96

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 4/60 (6%)
Query: 91  SQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAA 150
           S +EGL+    +D++YF +VT+TTVG     P +   K+ +  ++F G+GLV  F+ K A
Sbjct: 26  STVEGLRP---IDALYFSVVTLTTVGETP-PPQTDFGKIFTILYIFIGIGLVFGFIHKLA 81

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	354
3ukm_A	280	Potassium channel subfamily K member 1; membrane p	3e-22
3um7_A	309	Potassium channel subfamily K member 4; potassium	4e-21
3um7_A	309	Potassium channel subfamily K member 4; potassium	2e-08
3ouf_A	97	Potassium channel protein; ION channel, membrane,	3e-18
3ouf_A	97	Potassium channel protein; ION channel, membrane,	3e-16
3vou_A	148	ION transport 2 domain protein, voltage-gated SOD	7e-18
3vou_A	148	ION transport 2 domain protein, voltage-gated SOD	9e-17
2q67_A	114	Potassium channel protein; inverted teepee, helix	1e-17
2q67_A	114	Potassium channel protein; inverted teepee, helix	7e-17
3ldc_A	82	Calcium-gated potassium channel MTHK; transmembran	4e-17
3ldc_A	82	Calcium-gated potassium channel MTHK; transmembran	3e-12
1lnq_A	336	MTHK channels, potassium channel related protein;	8e-14
1lnq_A	336	MTHK channels, potassium channel related protein;	2e-13
2k1e_A	103	Water soluble analogue of potassium channel, KCSA;	2e-12
2k1e_A	103	Water soluble analogue of potassium channel, KCSA;	1e-05
3eff_K	139	Voltage-gated potassium channel; FULL length KCSA,	5e-12
3eff_K	139	Voltage-gated potassium channel; FULL length KCSA,	9e-06
3pjs_K	166	KCSA, voltage-gated potassium channel; ION channel	3e-11
3pjs_K	166	KCSA, voltage-gated potassium channel; ION channel	3e-05
2a9h_A	155	Voltage-gated potassium channel; potassium channel	5e-11
2a9h_A	155	Voltage-gated potassium channel; potassium channel	4e-05
2ih3_C	122	Voltage-gated potassium channel; ION channel D-ami	8e-11
2ih3_C	122	Voltage-gated potassium channel; ION channel D-ami	2e-05
1orq_C	223	Potassium channel; voltage-dependent, KVAP, FAB co	1e-10
1orq_C	223	Potassium channel; voltage-dependent, KVAP, FAB co	4e-05
2r9r_B	514	Paddle chimera voltage gated potassium channel KV;	7e-10
2r9r_B	514	Paddle chimera voltage gated potassium channel KV;	3e-04
1xl4_A	301	Inward rectifier potassium channel; integral membr	2e-09
1xl4_A	301	Inward rectifier potassium channel; integral membr	3e-05
1p7b_A	333	Integral membrane channel and cytosolic domains; t	4e-09
1p7b_A	333	Integral membrane channel and cytosolic domains; t	1e-04
3beh_A	355	MLL3241 protein; transmembrane protein, membrane p	4e-09
2qks_A	321	KIR3.1-prokaryotic KIR channel chimera; G-protein	8e-08
2qks_A	321	KIR3.1-prokaryotic KIR channel chimera; G-protein	6e-05
3sya_A	340	G protein-activated inward rectifier potassium CH;	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
3e3r_A	204	Calcyphosin, calcyphosine; human calcyphosine, EF-	6e-04

>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} Length = 280

 Score = 94.1 bits (233), Expect = 3e-22
 Identities = 32/210 (15%), Positives = 71/210 (33%), Gaps = 15/210 (7%)

Query: 86  FYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMF 145
             +V SQ  G    +   +++F    ++T GYG  VP S   K     +   G+    +F
Sbjct: 79  GVSVLSQASGNWNWDFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLF 138

Query: 146 LSKAADYLVDKQEILLVKALHRYQKVGPTDILKEIETNKVRYKCIIMLVLELVLILVGTI 205
           L+     +        V   H         +        V    +  + +     +   +
Sbjct: 139 LTAVVQRITVHVTRRPVLYFHIRWGFSKQVV------AIVHAVLLGFVTVSCFFFIPAAV 192

Query: 206 FLVVVEKMSFVDAFYCVCSTITTLGYGDKSFSTTGG-------RAFGVVWISSSTMTLAQ 258
           F V+ +  +F+++FY    +++T+G GD               +     ++    + +  
Sbjct: 193 FSVLEDDWNFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLV 252

Query: 259 FFLYVAEFNTEKRQKALVNWVLTRKMTHVD 288
                 E +  K+ + +    + +    VD
Sbjct: 253 VLETFCELHELKKFRKMF--YVKKDKDEVD 280

>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} Length = 309

 Score = 91.4 bits (226), Expect = 4e-21
 Identities = 34/189 (17%), Positives = 68/189 (35%), Gaps = 11/189 (5%)

Query: 104 SIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQEILLVK 163
           + +F    +TT+GYG++   +   +L    +   G+ L G+ L+   D L       +  
Sbjct: 119 AFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGSSLRHGIGH 178

Query: 164 ALHRYQKVGPTDILKEIETNKVRYKCIIMLVLELVLILVGTIFLVVVEKMSFVDAFYCVC 223
               + K          E  +V    + +L+  L+ +L  T     +E  S ++A Y V 
Sbjct: 179 IEAIFLKWHVPP-----ELVRVLSAMLFLLIGCLLFVLTPTFVFCYMEDWSKLEAIYFVI 233

Query: 224 STITTLGYGD------KSFSTTGGRAFGVVWISSSTMTLAQFFLYVAEFNTEKRQKALVN 277
            T+TT+G+GD          +   +     WI       A     +  +     ++    
Sbjct: 234 VTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLRVVSRRTRAE 293

Query: 278 WVLTRKMTH 286
                  ++
Sbjct: 294 MGGLTAQSN 302

>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} Length = 309

 Score = 54.5 bits (130), Expect = 2e-08
 Identities = 22/106 (20%), Positives = 41/106 (38%), Gaps = 13/106 (12%)

Query: 64  PRPNFKRVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVP- 122
                  +L+    ++   +  F      +E       L++IYF IVT+TTVG+GD V  
Sbjct: 195 VLSAMLFLLIGCLLFVLTPTFVF----CYMED---WSKLEAIYFVIVTLTTVGFGDYVAG 247

Query: 123 -----NSVVSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQEILLVK 163
                +S   + L   ++  G+      L+   ++L         +
Sbjct: 248 ADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLRVVSRRTRAE 293

>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A Length = 97

 Score = 77.9 bits (192), Expect = 3e-18
 Identities = 25/93 (26%), Positives = 51/93 (54%), Gaps = 3/93 (3%)

Query: 190 IIMLVLELVLILVGTIFLVVVEKMSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWI 249
            ++ VL ++ ++ GTIF   VE +  +DA Y    T+TT+GYGD S  T  G+ F +++I
Sbjct: 8   QVLFVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYI 67

Query: 250 SSSTMTLAQFFLYVAEFNTEKRQKALVNWVLTR 282
               + +   F ++ +     +  ++++ ++ R
Sbjct: 68  ---FIGIGLVFGFIHKLAVNVQLPSILSNLVPR 97

>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A Length = 97

 Score = 72.6 bits (178), Expect = 3e-16
 Identities = 31/103 (30%), Positives = 53/103 (51%), Gaps = 9/103 (8%)

Query: 65  RPNFKRVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNS 124
              F+ + V     L  G++ +      +EGL+    +D++YF +VT+TTVGYGD  P +
Sbjct: 4   DKEFQVLFVLTILTLISGTIFYS----TVEGLR---PIDALYFSVVTLTTVGYGDFSPQT 56

Query: 125 VVSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQEILLVKALHR 167
              K+ +  ++F G+GLV  F+ K A  +      +L   + R
Sbjct: 57  DFGKIFTILYIFIGIGLVFGFIHKLAVNVQ--LPSILSNLVPR 97

>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis} Length = 148

 Score = 78.4 bits (193), Expect = 7e-18
 Identities = 29/134 (21%), Positives = 55/134 (41%), Gaps = 7/134 (5%)

Query: 176 ILKEIETNKVRYKCIIMLVLELVLILVGTIFLVVVEKMSFVDAFYCVCSTITTLGYGDKS 235
           +LK         +  ++ VL  + +  GTIF   VE +  +DA Y    T+TT+G G+ S
Sbjct: 14  MLKACLRAWKDKEFQVLFVLTFLTLTSGTIFYSTVEGLRPLDALYFSVVTLTTVGDGNFS 73

Query: 236 FSTTGGRAFGVVWI-------SSSTMTLAQFFLYVAEFNTEKRQKALVNWVLTRKMTHVD 288
             T  G+ F +++I             LA      +  +  K++       +  K+  ++
Sbjct: 74  PQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNRKKETDAYRLEVMEKLEAIE 133

Query: 289 LEAADIDEDGVVSA 302
            + A+    G +  
Sbjct: 134 KKLAEHSRQGSLVP 147

>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis} Length = 148

 Score = 75.4 bits (185), Expect = 9e-17
 Identities = 29/118 (24%), Positives = 58/118 (49%), Gaps = 10/118 (8%)

Query: 65  RPNFKRVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNS 124
              F+ + V     L  G++ +      +EGL+    LD++YF +VT+TTVG G+  P +
Sbjct: 24  DKEFQVLFVLTFLTLTSGTIFYS----TVEGLR---PLDALYFSVVTLTTVGDGNFSPQT 76

Query: 125 VVSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQEILLVKALHRYQKVGPTDILKEIET 182
              K+ +  ++F G+GLV  F+ K A  +       ++    +       ++++++E 
Sbjct: 77  DFGKVFTILYIFIGIGLVFGFIHKLAVNVQLPS---ILSNRKKETDAYRLEVMEKLEA 131

>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A Length = 114

 Score = 76.8 bits (189), Expect = 1e-17
 Identities = 24/107 (22%), Positives = 54/107 (50%), Gaps = 3/107 (2%)

Query: 176 ILKEIETNKVRYKCIIMLVLELVLILVGTIFLVVVEKMSFVDAFYCVCSTITTLGYGDKS 235
           +L+         +  ++ VL ++ ++ GTIF   VE +  +DA Y    T+TT+G G+ S
Sbjct: 11  MLRACLRAWKDKEFQVLFVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGAGNFS 70

Query: 236 FSTTGGRAFGVVWISSSTMTLAQFFLYVAEFNTEKRQKALVNWVLTR 282
             T  G+ F +++I    + +   F ++ +     +  ++++ ++ R
Sbjct: 71  PQTDFGKIFTILYI---FIGIGLVFGFIHKLAVNVQLPSILSNLVPR 114

>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A Length = 114

 Score = 74.5 bits (183), Expect = 7e-17
 Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 7/95 (7%)

Query: 65  RPNFKRVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNS 124
              F+ + V     L  G++ +    S +EGL+    +D++YF +VT+TTVG G+  P +
Sbjct: 21  DKEFQVLFVLTILTLISGTIFY----STVEGLR---PIDALYFSVVTLTTVGAGNFSPQT 73

Query: 125 VVSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQEI 159
              K+ +  ++F G+GLV  F+ K A  +     +
Sbjct: 74  DFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSIL 108

>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 3r65_A 3ous_A 3ldd_A Length = 82

 Score = 74.3 bits (183), Expect = 4e-17
 Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 7/87 (8%)

Query: 68  FKRVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVS 127
             R+L+ + A +  G+  F+     IEG        S+Y+  VT+ TVGYGD  P++ + 
Sbjct: 3   ATRILLLVLAVIIYGTAGFHF----IEGE---SWTVSLYWTFVTIATVGYGDYSPHTPLG 55

Query: 128 KLLSCAFVFTGMGLVGMFLSKAADYLV 154
              +C  +  G+G   + + +  ++L+
Sbjct: 56  MYFTCTLIVLGIGTFAVAVERLLEFLI 82

>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 3r65_A 3ous_A 3ldd_A Length = 82

 Score = 60.8 bits (148), Expect = 3e-12
 Identities = 25/77 (32%), Positives = 34/77 (44%)

Query: 190 IIMLVLELVLILVGTIFLVVVEKMSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWI 249
             +L+L L +I+ GT     +E  S+  + Y    TI T+GYGD S  T  G  F    I
Sbjct: 4   TRILLLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLI 63

Query: 250 SSSTMTLAQFFLYVAEF 266
                T A     + EF
Sbjct: 64  VLGIGTFAVAVERLLEF 80

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A Length = 336

 Score = 70.6 bits (173), Expect = 8e-14
 Identities = 22/93 (23%), Positives = 47/93 (50%), Gaps = 7/93 (7%)

Query: 65  RPNFKRVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNS 124
           +    R+L+ + A +  G+  F+     IEG        S+Y+  VT+ TVGYGD  P++
Sbjct: 17  KVPATRILLLVLAVIIYGTAGFHF----IEGE---SWTVSLYWTFVTIATVGYGDYSPST 69

Query: 125 VVSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQ 157
            +    +   +  G+G   + + +  ++L++++
Sbjct: 70  PLGMYFTVTLIVLGIGTFAVAVERLLEFLINRE 102

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A Length = 336

 Score = 69.8 bits (171), Expect = 2e-13
 Identities = 34/117 (29%), Positives = 52/117 (44%)

Query: 171 VGPTDILKEIETNKVRYKCIIMLVLELVLILVGTIFLVVVEKMSFVDAFYCVCSTITTLG 230
           V   +I+++     ++     +L+L L +I+ GT     +E  S+  + Y    TI T+G
Sbjct: 2   VLVIEIIRKHLPRVLKVPATRILLLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVG 61

Query: 231 YGDKSFSTTGGRAFGVVWISSSTMTLAQFFLYVAEFNTEKRQKALVNWVLTRKMTHV 287
           YGD S ST  G  F V  I     T A     + EF   + Q  L+  +   K  HV
Sbjct: 62  YGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINREQMKLMGLIDVAKSRHV 118

>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A Length = 103

 Score = 62.1 bits (151), Expect = 2e-12
 Identities = 16/74 (21%), Positives = 28/74 (37%)

Query: 71  VLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLL 130
               L   L   S           G       D+I++ + T TTVGYGD  P +   + +
Sbjct: 11  AEEELQKVLEEASKKAVEAERGAPGAALISYPDAIWWSVETATTVGYGDRYPVTEEGRKV 70

Query: 131 SCAFVFTGMGLVGM 144
           +   +  G+ +  +
Sbjct: 71  AEQVMKAGIEVFAL 84

>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A Length = 103

 Score = 42.8 bits (101), Expect = 1e-05
 Identities = 21/98 (21%), Positives = 33/98 (33%), Gaps = 16/98 (16%)

Query: 189 CIIMLVLELVLILVGTIFLVVVEK-------MSFVDAFYCVCSTITTLGYGDKSFSTTGG 241
                     ++   +   V  E+       +S+ DA +    T TT+GYGD+   T  G
Sbjct: 8   AQKAEEELQKVLEEASKKAVEAERGAPGAALISYPDAIWWSVETATTVGYGDRYPVTEEG 67

Query: 242 RAF-------GVVWISSSTMTLAQFFLYVAEFNTEKRQ 272
           R         G+   +  T  LA  F  V      +  
Sbjct: 68  RKVAEQVMKAGIEVFALVTAALATDF--VRREEERRGH 103

>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans} Length = 139

 Score = 61.8 bits (150), Expect = 5e-12
 Identities = 21/122 (17%), Positives = 43/122 (35%), Gaps = 4/122 (3%)

Query: 69  KRVLVYLAAYLGGG----SLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNS 124
            R        L       S           G +      ++++ + T TTVGYGDL P +
Sbjct: 5   WRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVT 64

Query: 125 VVSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQEILLVKALHRYQKVGPTDILKEIETNK 184
           +  +L++   +  G+   G+  +  A + V +++      +   +K       +      
Sbjct: 65  LWGRLVAVVVMVAGITSFGLVTAALATWFVGREQERRGHFVRHSEKAAEEAYTRTTRALH 124

Query: 185 VR 186
            R
Sbjct: 125 ER 126

>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans} Length = 139

 Score = 44.1 bits (104), Expect = 9e-06
 Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 8/71 (11%)

Query: 185 VRYKCIIMLVLEL-VLILVGTIFLVVVEK-------MSFVDAFYCVCSTITTLGYGDKSF 236
           + ++      + L +++L G+   V+ E+       +++  A +    T TT+GYGD   
Sbjct: 3   LHWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYP 62

Query: 237 STTGGRAFGVV 247
            T  GR   VV
Sbjct: 63  VTLWGRLVAVV 73

>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A Length = 166

 Score = 60.3 bits (146), Expect = 3e-11
 Identities = 21/122 (17%), Positives = 44/122 (36%), Gaps = 4/122 (3%)

Query: 69  KRVLVYLAAYLGGG----SLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNS 124
            R        L       S           G +      ++++ + T TTVGYGDL P +
Sbjct: 32  WRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVT 91

Query: 125 VVSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQEILLVKALHRYQKVGPTDILKEIETNK 184
           +  +L++   +  G+   G+  +  A + V +++    + +   +K       +      
Sbjct: 92  LWGRLVAVVVMVAGITSFGLVTAALATWFVGQEQQQQQQFVRHSEKAAEEAYTRTTRALH 151

Query: 185 VR 186
            R
Sbjct: 152 ER 153

>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A Length = 166

 Score = 43.0 bits (101), Expect = 3e-05
 Identities = 23/121 (19%), Positives = 42/121 (34%), Gaps = 14/121 (11%)

Query: 190 IIMLVLELVLILVGTIFLVVVEK-------MSFVDAFYCVCSTITTLGYGDKSFSTTGGR 242
               VL ++++L G+   V+ E+       +++  A +    T TT+GYGD    T  GR
Sbjct: 36  GAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGR 95

Query: 243 AF-------GVVWISSSTMTLAQFFLYVAEFNTEKRQKALVNWVLTRKMTHVDLEAADID 295
                    G+      T  LA +F+   +   ++  +                     D
Sbjct: 96  LVAVVVMVAGITSFGLVTAALATWFVGQEQQQQQQFVRHSEKAAEEAYTRTTRALHERFD 155

Query: 296 E 296
            
Sbjct: 156 R 156

>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1 Length = 155

 Score = 59.5 bits (144), Expect = 5e-11
 Identities = 20/106 (18%), Positives = 40/106 (37%), Gaps = 4/106 (3%)

Query: 69  KRVLVYLAAYLGGG----SLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNS 124
            R        L       S           G       D++++ + T TTVGYGDL P +
Sbjct: 49  WRAAGAATVLLVIVLLAGSYLAVLAERGAPGAALISYPDALWWSVETATTVGYGDLYPVT 108

Query: 125 VVSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQEILLVKALHRYQK 170
           +  + ++   +  G+   G+  +  A + V +++      +   +K
Sbjct: 109 LWGRCVAVVVMVAGITSYGLVFAAVATWFVGREQERRGHFVRHSEK 154

>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1 Length = 155

 Score = 42.5 bits (100), Expect = 4e-05
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 7/75 (9%)

Query: 190 IIMLVLELVLILVGTIFLVVVEK-------MSFVDAFYCVCSTITTLGYGDKSFSTTGGR 242
               VL ++++L G+   V+ E+       +S+ DA +    T TT+GYGD    T  GR
Sbjct: 53  GAATVLLVIVLLAGSYLAVLAERGAPGAALISYPDALWWSVETATTVGYGDLYPVTLWGR 112

Query: 243 AFGVVWISSSTMTLA 257
              VV + +   +  
Sbjct: 113 CVAVVVMVAGITSYG 127

>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ... Length = 122

 Score = 57.8 bits (140), Expect = 8e-11
 Identities = 18/93 (19%), Positives = 36/93 (38%), Gaps = 4/93 (4%)

Query: 70  RVLVYLAAYLGGG----SLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSV 125
           R        L       S           G +      ++++   T TTV YGDL P ++
Sbjct: 27  RAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWACETATTVAYGDLYPVTL 86

Query: 126 VSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQE 158
             +L++   +  G+   G+  +  A + V +++
Sbjct: 87  WGRLVAVVVMVAGITSFGLVTAALATWFVGREQ 119

>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ... Length = 122

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 8/90 (8%)

Query: 176 ILKEIETNKVRYKCIIMLVLELVL-ILVGTIFLVVVEK-------MSFVDAFYCVCSTIT 227
           +L     + + ++      + LV+ +L G+   V+ E+       +++  A +  C T T
Sbjct: 15  LLLGRHGSALHWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWACETAT 74

Query: 228 TLGYGDKSFSTTGGRAFGVVWISSSTMTLA 257
           T+ YGD    T  GR   VV + +   +  
Sbjct: 75  TVAYGDLYPVTLWGRLVAVVVMVAGITSFG 104

>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A Length = 223

 Score = 59.5 bits (145), Expect = 1e-10
 Identities = 20/93 (21%), Positives = 41/93 (44%), Gaps = 5/93 (5%)

Query: 57  SESLFGKPRPNFKRVLVYLAAYLGGGSLSFYAVN-SQIEGLKTNE----ILDSIYFCIVT 111
                        ++  Y        ++ + A     +E    N     + D++++ +VT
Sbjct: 117 GSKFLSAIADAADKIRFYHLFGAVMLTVLYGAFAIYIVEYPDPNSSIKSVFDALWWAVVT 176

Query: 112 MTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGM 144
            TTVGYGD+VP + + K++  A + TG+  + +
Sbjct: 177 ATTVGYGDVVPATPIGKVIGIAVMLTGISALTL 209

>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A Length = 223

 Score = 43.4 bits (103), Expect = 4e-05
 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 7/65 (10%)

Query: 190 IIMLVLELVLILVGTIFLVVVEK-------MSFVDAFYCVCSTITTLGYGDKSFSTTGGR 242
             +    ++ +L G   + +VE         S  DA +    T TT+GYGD   +T  G+
Sbjct: 134 YHLFGAVMLTVLYGAFAIYIVEYPDPNSSIKSVFDALWWAVVTATTVGYGDVVPATPIGK 193

Query: 243 AFGVV 247
             G+ 
Sbjct: 194 VIGIA 198

>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* Length = 514

 Score = 59.3 bits (143), Expect = 7e-10
 Identities = 15/44 (34%), Positives = 28/44 (63%)

Query: 101 ILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGM 144
           I D+ ++ +V+MTTVGYGD+VP ++  K++       G+  + +
Sbjct: 376 IPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIAL 419

>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* Length = 514

 Score = 41.6 bits (97), Expect = 3e-04
 Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 8/75 (10%)

Query: 190 IIMLVLELVLILVGTIFLVVVEKM-------SFVDAFYCVCSTITTLGYGDKSFSTTGGR 242
           +++  L + +IL  +  +   E         S  DAF+    ++TT+GYGD   +T GG+
Sbjct: 345 LLIFFLFIGVILFSSA-VYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGK 403

Query: 243 AFGVVWISSSTMTLA 257
             G +   +  +T+A
Sbjct: 404 IVGSLCAIAGVLTIA 418

>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A* Length = 301

 Score = 57.0 bits (137), Expect = 2e-09
 Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 1/77 (1%)

Query: 71  VLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLL 130
             +YL          + A    IE  +     D+ +F + TM T+GYG L+P   ++  L
Sbjct: 54  TGLYLVTNALFALA-YLACGDVIENARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTL 112

Query: 131 SCAFVFTGMGLVGMFLS 147
                  GM  + +  S
Sbjct: 113 VTLEALCGMLGLAVAAS 129

>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A* Length = 301

 Score = 44.3 bits (104), Expect = 3e-05
 Identities = 18/96 (18%), Positives = 29/96 (30%), Gaps = 8/96 (8%)

Query: 186 RYKCIIMLVLELVLILVGTIFLVVVEKM-------SFVDAFYCVCSTITTLGYGDKSFST 238
                ++  L LV   +  +  +    +       SF DAF+    T+ T+GYG      
Sbjct: 47  PVFITLITGLYLVTNALFALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGKLIPIG 106

Query: 239 TGGRAFGVVWISSSTMTLA-QFFLYVAEFNTEKRQK 273
                   +      + LA    L  A F       
Sbjct: 107 PLANTLVTLEALCGMLGLAVAASLIYARFTRPTAGV 142

>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A* Length = 333

 Score = 56.3 bits (135), Expect = 4e-09
 Identities = 29/152 (19%), Positives = 53/152 (34%), Gaps = 7/152 (4%)

Query: 7   NQPLLSGFVDSTPQTNNKDAPKRRRLRRCRSAPQTDVAALDINEKDSTHLSESLFGKPRP 66
           N    S     +       A K  R  R   +   +V A  +       L         P
Sbjct: 2   NVDPFSPHSSDSFAQAASPARKPPRGGRRIWSGTREVIAYGMPASVWRDLYYWALKVSWP 61

Query: 67  NFKRVL--VYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNS 124
            F   L  +++        L +   ++ I        + + +F + T+ TVGYGD+ P +
Sbjct: 62  VFFASLAALFVVNNTLFALL-YQLGDAPIANQSPPGFVGAFFFSVETLATVGYGDMHPQT 120

Query: 125 VVSKLLSCAFVFTGMGL----VGMFLSKAADY 152
           V +  ++   +F GM       G+  ++ A  
Sbjct: 121 VYAHAIATLEIFVGMSGIALSTGLVFARFARP 152

>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A* Length = 333

 Score = 42.5 bits (99), Expect = 1e-04
 Identities = 20/107 (18%), Positives = 34/107 (31%), Gaps = 8/107 (7%)

Query: 175 DILKEIETNKVRYKCIIMLVLELVLILVGTIFLVVVEK-------MSFVDAFYCVCSTIT 227
           D+               +  L +V   +  +   + +          FV AF+    T+ 
Sbjct: 50  DLYYWALKVSWPVFFASLAALFVVNNTLFALLYQLGDAPIANQSPPGFVGAFFFSVETLA 109

Query: 228 TLGYGDKSFSTTGGRAFGVVWISSSTMTLAQFF-LYVAEFNTEKRQK 273
           T+GYGD    T    A   + I      +A    L  A F   + + 
Sbjct: 110 TVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARPRAKI 156

>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* Length = 355

 Score = 56.4 bits (136), Expect = 4e-09
 Identities = 15/44 (34%), Positives = 31/44 (70%)

Query: 101 ILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGM 144
           I  ++++ +VT++T GYGD +P S   ++L+ A + +G+G+ G+
Sbjct: 162 IPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGL 205

>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans} Length = 321

 Score = 52.4 bits (125), Expect = 8e-08
 Identities = 16/76 (21%), Positives = 35/76 (46%), Gaps = 1/76 (1%)

Query: 71  VLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLL 130
            +++L       +L +   ++ I          + +F + T+ TVGYGD+ P +V +  +
Sbjct: 50  AVLFLLLNTAFATL-YMLGSAPIANQFPAGFGGAFFFSVETLATVGYGDMHPQTVYAHWI 108

Query: 131 SCAFVFTGMGLVGMFL 146
           +   +F GM  + +  
Sbjct: 109 ATLEIFVGMSSIALAT 124

>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans} Length = 321

 Score = 43.2 bits (101), Expect = 6e-05
 Identities = 21/108 (19%), Positives = 42/108 (38%), Gaps = 8/108 (7%)

Query: 174 TDILKEIETNKVRYKCIIMLVLELVLILV-GTIFLVVVE------KMSFVDAFYCVCSTI 226
           +D+   +   K R+  + + VL L+L     T++++            F  AF+    T+
Sbjct: 31  SDLFTTLVDLKWRWFFVSLAVLFLLLNTAFATLYMLGSAPIANQFPAGFGGAFFFSVETL 90

Query: 227 TTLGYGDKSFSTTGGRAFGVVWISSSTMTLAQFF-LYVAEFNTEKRQK 273
            T+GYGD    T        + I     ++A        + +  K++ 
Sbjct: 91  ATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQPKKRA 138

>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A* Length = 340

 Score = 42.0 bits (98), Expect = 1e-04
 Identities = 16/79 (20%), Positives = 27/79 (34%), Gaps = 2/79 (2%)

Query: 71  VLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVP--NSVVSK 128
           ++ +L AY+ G        +        N  + +  F I T TT+GYG  V         
Sbjct: 62  MIWWLIAYIRGDMDHIEDPSWTPCVTNLNGFVSAFLFSIETETTIGYGYRVITDKCPEGI 121

Query: 129 LLSCAFVFTGMGLVGMFLS 147
           +L       G  +    + 
Sbjct: 122 ILLLIQSVLGSIVNAFMVG 140

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 2e-04
 Identities = 45/362 (12%), Positives = 107/362 (29%), Gaps = 97/362 (26%)

Query: 1   MASNGANQPLLSGFVDSTPQTNNKDAPKRRRLRRCRSAPQTDVAALDI--NEKDSTHLSE 58
           +  N  ++   S    +     +    + RRL + +         L +  N +++   + 
Sbjct: 209 IDPNWTSRSDHS---SNIKLRIHSIQAELRRLLKSKPYEN----CLLVLLNVQNAKAWN- 260

Query: 59  SLFGKPRPNFK-RVLV-----YLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTM 112
             F     N   ++L+      +  +L   + +  +++     L  +E+   +   +   
Sbjct: 261 -AF-----NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL--- 311

Query: 113 TTVGYGDLVPNSV--VSKLLSCAFVFTGMGLVGMFLSKAAD-------YLVDKQEILLVK 163
                 DL P  V   +           + ++   +               DK   ++  
Sbjct: 312 -DCRPQDL-PREVLTTNPRR--------LSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361

Query: 164 ALHRYQKVGPTDILKEIETNKVRYKCIIMLVL--ELVLILVGTIFLV-----VVEKMSFV 216
           +L         ++L+  E  K  +     L +      I    + L+       + M  V
Sbjct: 362 SL---------NVLEPAEYRK-MFD---RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV 408

Query: 217 DAFYCVCSTITTLGYGDKSFSTTGGRAFGVV--WISSSTMTLAQFFLYVAEFNTEKRQ-- 272
           +  +              S          +V      ST+++   +L +      +    
Sbjct: 409 NKLH------------KYS----------LVEKQPKESTISIPSIYLELKVKLENEYALH 446

Query: 273 KALVN-WVLTRKMTHVDLEAADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDL 331
           +++V+ + + +     DL       D        I + LK +     E + L    F D 
Sbjct: 447 RSIVDHYNIPKTFDSDDL--IPPYLDQYF--YSHIGHHLKNIEHP--ERMTLFRMVFLDF 500

Query: 332 DF 333
            F
Sbjct: 501 RF 502

>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand, phosphoprotein, calcium binding; 2.65A {Homo sapiens} Length = 204

 Score = 39.6 bits (93), Expect = 6e-04
 Identities = 12/56 (21%), Positives = 19/56 (33%), Gaps = 3/56 (5%)

Query: 289 LEAADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDL 344
               D +  G +   EF+      M +  +  I      F  LD    G ++  DL
Sbjct: 79  CRKWDRNGSGTLDLEEFLRALRPPMSQAREAVI---AAAFAKLDRSGDGVVTVDDL 131

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	354
3ukm_A	280	Potassium channel subfamily K member 1; membrane p	100.0
3um7_A	309	Potassium channel subfamily K member 4; potassium	100.0
2k1e_A	103	Water soluble analogue of potassium channel, KCSA;	99.75
3ldc_A	82	Calcium-gated potassium channel MTHK; transmembran	99.74
3eff_K	139	Voltage-gated potassium channel; FULL length KCSA,	99.74
2k1e_A	103	Water soluble analogue of potassium channel, KCSA;	99.74
3eff_K	139	Voltage-gated potassium channel; FULL length KCSA,	99.73
3ouf_A	97	Potassium channel protein; ION channel, membrane,	99.72
2ih3_C	122	Voltage-gated potassium channel; ION channel D-ami	99.72
2q67_A	114	Potassium channel protein; inverted teepee, helix	99.71
3ldc_A	82	Calcium-gated potassium channel MTHK; transmembran	99.71
2a9h_A	155	Voltage-gated potassium channel; potassium channel	99.7
2ih3_C	122	Voltage-gated potassium channel; ION channel D-ami	99.69
3ouf_A	97	Potassium channel protein; ION channel, membrane,	99.69
3vou_A	148	ION transport 2 domain protein, voltage-gated SOD	99.69
4h33_A	137	LMO2059 protein; bilayers, KVLM, lipidic cubic pha	99.68
2a9h_A	155	Voltage-gated potassium channel; potassium channel	99.67
2q67_A	114	Potassium channel protein; inverted teepee, helix	99.66
4h33_A	137	LMO2059 protein; bilayers, KVLM, lipidic cubic pha	99.64
3vou_A	148	ION transport 2 domain protein, voltage-gated SOD	99.63
3pjs_K	166	KCSA, voltage-gated potassium channel; ION channel	99.58
3pjs_K	166	KCSA, voltage-gated potassium channel; ION channel	99.55
1orq_C	223	Potassium channel; voltage-dependent, KVAP, FAB co	99.54
1orq_C	223	Potassium channel; voltage-dependent, KVAP, FAB co	99.54
3ukm_A	280	Potassium channel subfamily K member 1; membrane p	99.5
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	99.49
1xl4_A	301	Inward rectifier potassium channel; integral membr	99.49
1p7b_A	333	Integral membrane channel and cytosolic domains; t	99.46
1lnq_A	336	MTHK channels, potassium channel related protein;	99.44
3beh_A	355	MLL3241 protein; transmembrane protein, membrane p	99.43
2qks_A	321	KIR3.1-prokaryotic KIR channel chimera; G-protein	99.43
3um7_A	309	Potassium channel subfamily K member 4; potassium	99.42
3beh_A	355	MLL3241 protein; transmembrane protein, membrane p	99.36
2r9r_B	514	Paddle chimera voltage gated potassium channel KV;	99.33
1xl4_A	301	Inward rectifier potassium channel; integral membr	99.33
1lnq_A	336	MTHK channels, potassium channel related protein;	99.3
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	99.29
2r9r_B	514	Paddle chimera voltage gated potassium channel KV;	99.27
2qks_A	321	KIR3.1-prokaryotic KIR channel chimera; G-protein	99.27
1p7b_A	333	Integral membrane channel and cytosolic domains; t	99.25
3sya_A	340	G protein-activated inward rectifier potassium CH;	99.12
3spc_A	343	Inward-rectifier K+ channel KIR2.2; PIP, membrane	99.01
3sya_A	340	G protein-activated inward rectifier potassium CH;	98.97
3spc_A	343	Inward-rectifier K+ channel KIR2.2; PIP, membrane	98.88
3rvy_A	285	ION transport protein; tetrameric ION channel, vol	98.78
3rvy_A	285	ION transport protein; tetrameric ION channel, vol	98.57
3pjz_A	494	Potassium uptake protein TRKH; structural genomics	97.27
4dxw_A	229	Navrh, ION transport protein; tetrameric, voltage-	96.58
4dxw_A	229	Navrh, ION transport protein; tetrameric, voltage-	96.42
3kg2_A	823	Glutamate receptor 2; ION channel, membrane protei	95.42
3pjz_A	494	Potassium uptake protein TRKH; structural genomics	95.06
3kg2_A	823	Glutamate receptor 2; ION channel, membrane protei	94.43
3k21_A	191	PFCDPK3, calcium-dependent protein kinase 3; calci	92.71
2lv7_A	100	Calcium-binding protein 7; metal binding protein;	92.54
2ccm_A	191	Calexcitin; EF hand, calcium, signaling protein; 1	92.43
1tiz_A	67	Calmodulin-related protein, putative; helix-turn-h	92.3
1yx7_A	83	Calsensin, LAN3-6 antigen; calcium-binding protein	92.21
3ox6_A	153	Calcium-binding protein 1; EF-hand, calcium-sensor	92.2
3h4s_E	135	KCBP interacting Ca2+-binding protein; kinesin, mo	91.75
3li6_A	66	Calcium-binding protein; calcium signaling protein	91.64
1pva_A	110	Parvalbumin; calcium binding; 1.65A {Esox lucius}	91.57
1fi6_A	92	EH domain protein REPS1; EPS15 homology domain, EF	91.54
2obh_A	143	Centrin-2; DNA repair complex EF hand superfamily	91.46
1w7j_B	151	Myosin light chain 1; motor protein, unconventiona	91.46
2sas_A	185	Sarcoplasmic calcium-binding protein; 2.40A {Branc	91.38
3i5g_C	159	Myosin catalytic light chain LC-1, mantle muscle;	91.35
2lv7_A	100	Calcium-binding protein 7; metal binding protein;	91.35
1rwy_A	109	Parvalbumin alpha; EF-hand, calcium-binding, calci	91.34
3ll8_B	155	Calcineurin subunit B type 1; protein-peptide dock	91.34
1ggw_A	140	Protein (CDC4P); light chain, cytokinesis, cell cy	91.34
2ct9_A	208	Calcium-binding protein P22; EF-hand, metal bindin	91.31
2mys_C	149	Myosin; muscle protein, motor protein; HET: MLY; 2	91.27
2kz2_A	94	Calmodulin, CAM; TR2C, metal binding protein; NMR	91.13
3ll8_B	155	Calcineurin subunit B type 1; protein-peptide dock	91.01
1exr_A	148	Calmodulin; high resolution, disorder, metal trans	90.98
1wdc_C	156	Scallop myosin; calcium binding protein, muscle pr	90.83
1rro_A	108	RAT oncomodulin; calcium-binding protein; 1.30A {R	90.65
2bec_A	202	Calcineurin B homologous protein 2; calcineurin-ho	90.64
2bl0_C	142	Myosin regulatory light chain; muscle protein, sli	90.62
1nya_A	176	Calerythrin; EF-hand, metal binding protein; NMR {	90.62
2pvb_A	108	Protein (parvalbumin); calcium binding protein, me	90.41
2lmt_A	148	Calmodulin-related protein 97A; spermatogenesis, m	90.4
3fs7_A	109	Parvalbumin, thymic; calcium-binding protein, EF-h	90.06
1c07_A	95	Protein (epidermal growth factor receptor pathway	90.04
3qrx_A	169	Centrin; calcium-binding, EF-hand, cell division,	89.96
2sas_A	185	Sarcoplasmic calcium-binding protein; 2.40A {Branc	89.86
1k9u_A	78	Polcalcin PHL P 7; pollen allergen, calcium-bindin	89.84
1k94_A	165	Grancalcin; penta-EF-hand protein, calcium binding	89.67
1bu3_A	109	Calcium-binding protein; 1.65A {Merluccius bilinea	89.56
2pmy_A	91	RAS and EF-hand domain-containing protein; rasef,	89.51
3qrx_A	169	Centrin; calcium-binding, EF-hand, cell division,	89.47
2f2o_A	179	Calmodulin fused with calmodulin-binding domain of	89.45
2bec_A	202	Calcineurin B homologous protein 2; calcineurin-ho	89.42
2ktg_A	85	Calmodulin, putative; ehcam, Ca-binding protein, p	89.36
1gjy_A	167	Sorcin, CP-22, V19; calcium binding, calcium-bindi	89.36
2kyc_A	108	Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand p	89.28
3fwb_A	161	Cell division control protein 31; gene gating, com	89.27
3k21_A	191	PFCDPK3, calcium-dependent protein kinase 3; calci	89.25
2hpk_A	208	Photoprotein berovin; structural genomics, PSI, pr	89.25
1jfj_A	134	Ehcabp, calcium-binding protein; EF-hand, helix-lo	89.17
1j7q_A	86	CAVP, calcium vector protein; EF-hand family, calc	89.13
1y1x_A	191	Leishmania major homolog of programmed cell death	89.07
2opo_A	86	Polcalcin CHE A 3; calcium-binding protein, dimer,	89.03
4ds7_A	147	Calmodulin, CAM; protein binding, metal binding, s	88.99
2joj_A	77	Centrin protein; N-terminal domain, centrin soluti	88.99
3a4u_B	143	Multiple coagulation factor deficiency protein 2;	88.86
1dgu_A	183	Calcium-saturated CIB; helical, EF-hands, blood cl	88.82
1dtl_A	161	Cardiac troponin C; helix-turn-helix, structural p	88.81
2ehb_A	207	Calcineurin B-like protein 4; protein complex, Ca(	88.74
3e3r_A	204	Calcyphosin, calcyphosine; human calcyphosine, EF-	88.67
1juo_A	198	Sorcin; calcium-binding proteins, penta-EF-hand, P	88.6
3khe_A	191	Calmodulin-like domain protein kinase isoform 3; c	88.51
2zfd_A	226	Calcineurin B-like protein 2; calcium binding prot	88.4
5pal_A	109	Parvalbumin; calcium-binding protein; 1.54A {Triak	88.39
2ovk_C	159	Myosin catalytic light chain LC-1, mantle muscle,	88.36
1alv_A	173	Calpain, S-camld; calcium binding, calmodulin like	88.29
3akb_A	166	Putative calcium binding protein; EF-hand, metal b	88.17
2opo_A	86	Polcalcin CHE A 3; calcium-binding protein, dimer,	88.16
2ct9_A	208	Calcium-binding protein P22; EF-hand, metal bindin	88.15
2joj_A	77	Centrin protein; N-terminal domain, centrin soluti	88.08
2l4h_A	214	Calcium and integrin-binding protein 1; metal bind	88.06
2obh_A	143	Centrin-2; DNA repair complex EF hand superfamily	88.02
3a4u_B	143	Multiple coagulation factor deficiency protein 2;	87.95
1fi6_A	92	EH domain protein REPS1; EPS15 homology domain, EF	87.89
3sjs_A	220	URE3-BP sequence specific DNA binding protein; EF-	87.87
1c07_A	95	Protein (epidermal growth factor receptor pathway	87.79
2kgr_A	111	Intersectin-1; structure, alternative splicing, ca	87.73
1nya_A	176	Calerythrin; EF-hand, metal binding protein; NMR {	87.71
2r2i_A	198	Guanylyl cyclase-activating protein 1; EF hand, GC	87.67
2lmt_A	148	Calmodulin-related protein 97A; spermatogenesis, m	87.59
1j7q_A	86	CAVP, calcium vector protein; EF-hand family, calc	87.58
3akb_A	166	Putative calcium binding protein; EF-hand, metal b	87.54
2lhi_A	176	Calmodulin, serine/threonine-protein phosphatase c	87.51
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	87.49
1m45_A	148	MLC1P, myosin light chain; protein-peptide complex	87.48
2l4h_A	214	Calcium and integrin-binding protein 1; metal bind	87.44
1jba_A	204	GCAP-2, protein (guanylate cyclase activating prot	87.38
3ox6_A	153	Calcium-binding protein 1; EF-hand, calcium-sensor	87.35
1s6j_A	87	CDPK, calcium-dependent protein kinase SK5; EF-han	87.33
2ggz_A	211	Guanylyl cyclase-activating protein 3; EF hand, gu	87.31
1avs_A	90	Troponin C; muscle contraction, calcium-activated,	87.27
2ovk_C	159	Myosin catalytic light chain LC-1, mantle muscle,	87.19
1avs_A	90	Troponin C; muscle contraction, calcium-activated,	87.18
1top_A	162	Troponin C; contractIle system protein; 1.78A {Gal	87.1
3mse_B	180	Calcium-dependent protein kinase, putative; CDPKS,	87.04
1eh2_A	106	EPS15; calcium binding, signaling domain, NPF bind	87.01
2znd_A	172	Programmed cell death protein 6; penta-EF-hand pro	87.0
2i7a_A	174	Calpain 13; calcium-dependent cytoplasmic cysteine	86.9
3u0k_A	440	Rcamp; fluorescent protein, calcium binding, EF-ha	86.86
2kn2_A	92	Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco	86.86
1qjt_A	99	EH1, epidermal growth factor receptor substrate su	86.84
1s6c_A	183	KV4 potassium channel-interacting protein kchip1B;	86.81
4ds7_A	147	Calmodulin, CAM; protein binding, metal binding, s	86.73
2kgr_A	111	Intersectin-1; structure, alternative splicing, ca	86.71
1s1e_A	224	KV channel interacting protein 1; kchip, calcium-b	86.7
3i5g_B	153	Myosin regulatory light chain LC-2, mantle muscle;	86.64
2d58_A	107	Allograft inflammatory factor 1; EF-hand, metal bi	86.41
1s6j_A	87	CDPK, calcium-dependent protein kinase SK5; EF-han	86.4
2b1u_A	71	Calmodulin-like protein 5; CLSP, calmodulin-like S	86.39
3j04_B	143	Myosin regulatory light chain 2, smooth muscle MA	86.37
1bjf_A	193	Neurocalcin delta; calcium-binding, myristoylation	86.32
2ktg_A	85	Calmodulin, putative; ehcam, Ca-binding protein, p	86.29
1exr_A	148	Calmodulin; high resolution, disorder, metal trans	86.15
2l2e_A	190	Calcium-binding protein NCS-1; NCS1P, myristoylate	86.07
2ccm_A	191	Calexcitin; EF hand, calcium, signaling protein; 1	86.06
2zfd_A	226	Calcineurin B-like protein 2; calcium binding prot	86.06
2hps_A	186	Coelenterazine-binding protein with bound coelent;	85.97
5pal_A	109	Parvalbumin; calcium-binding protein; 1.54A {Triak	85.96
1fpw_A	190	Yeast frequenin, calcium-binding protein NCS-1; EF	85.94
2aao_A	166	CDPK, calcium-dependent protein kinase, isoform AK	85.89
2mys_B	166	Myosin; muscle protein, motor protein; HET: MLY; 2	85.89
3dd4_A	229	KV channel-interacting protein 4; EF-hands protein	85.87
3j04_B	143	Myosin regulatory light chain 2, smooth muscle MA	85.79
2kn2_A	92	Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco	85.71
1q80_A	174	SCP, sarcoplasmic calcium-binding protein; all-alp	85.63
3pm8_A	197	PFCDPK2, calcium-dependent protein kinase 2; malar	85.63
1top_A	162	Troponin C; contractIle system protein; 1.78A {Gal	85.62
1qv0_A	195	Obelin, OBL; photoprotein, bioluminescence, atomic	85.57
2jul_A	256	Calsenilin; EF-hand, calcium, LXXLL, DNA binding p	85.41
1bu3_A	109	Calcium-binding protein; 1.65A {Merluccius bilinea	85.39
1uhk_A	191	Aequorin 2, aequorin; EF-hand motif, complex, lumi	85.28
2jnf_A	158	Troponin C; stretch activated muscle contraction,	85.17
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	85.17
1wlz_A	105	DJBP, CAP-binding protein complex interacting prot	85.01
1qx2_A	76	Vitamin D-dependent calcium-binding protein, INTE;	84.99
2bl0_B	145	Myosin regulatory light chain; muscle protein, sli	84.92
2znd_A	172	Programmed cell death protein 6; penta-EF-hand pro	84.82
1rwy_A	109	Parvalbumin alpha; EF-hand, calcium-binding, calci	84.81
1g8i_A	190	Frequenin, neuronal calcium sensor 1; calcium bind	84.76
2jnf_A	158	Troponin C; stretch activated muscle contraction,	84.71
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	84.55
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	84.5
1m45_A	148	MLC1P, myosin light chain; protein-peptide complex	84.4
2lhi_A	176	Calmodulin, serine/threonine-protein phosphatase c	84.4
1wdc_B	156	Scallop myosin; calcium binding protein, muscle pr	84.29
1iq3_A	110	Ralbp1-interacting protein (partner of ralbp1); EF	84.24
2pmy_A	91	RAS and EF-hand domain-containing protein; rasef,	84.21
2be4_A	272	Hypothetical protein LOC449832; DR.36843, BC083168	84.19
3u0k_A	440	Rcamp; fluorescent protein, calcium binding, EF-ha	84.18
2ehb_A	207	Calcineurin B-like protein 4; protein complex, Ca(	83.6
2jq6_A	139	EH domain-containing protein 1; metal binding prot	83.32
2d8n_A	207	Recoverin; structural genomics, NPPSFA, national p	83.26
3fs7_A	109	Parvalbumin, thymic; calcium-binding protein, EF-h	83.25
1dgu_A	183	Calcium-saturated CIB; helical, EF-hands, blood cl	83.24
3h4s_E	135	KCBP interacting Ca2+-binding protein; kinesin, mo	83.24
2pvb_A	108	Protein (parvalbumin); calcium binding protein, me	82.62
1k2h_A	93	S100A1, S-100 protein, alpha chain; non-covalent h	82.59
2f2o_A	179	Calmodulin fused with calmodulin-binding domain of	82.22
3n22_A	98	Protein S100-A2; EF-hand, calcium-binding, zinc-bi	82.17
1wdc_C	156	Scallop myosin; calcium binding protein, muscle pr	82.07
2hpk_A	208	Photoprotein berovin; structural genomics, PSI, pr	81.88
1w7j_B	151	Myosin light chain 1; motor protein, unconventiona	81.73
3fwb_A	161	Cell division control protein 31; gene gating, com	81.7
2mys_C	149	Myosin; muscle protein, motor protein; HET: MLY; 2	81.67
1y1x_A	191	Leishmania major homolog of programmed cell death	81.43
3rm1_A	92	Protein S100-B; alpha-helical, EF hand, metal bind	81.22
2bl0_C	142	Myosin regulatory light chain; muscle protein, sli	81.02
1uhk_A	191	Aequorin 2, aequorin; EF-hand motif, complex, lumi	80.89
2bl0_B	145	Myosin regulatory light chain; muscle protein, sli	80.85
2mys_B	166	Myosin; muscle protein, motor protein; HET: MLY; 2	80.83
2qac_A	146	Myosin A tail domain interacting protein MTIP; mal	80.79
1wy9_A	147	Allograft inflammatory factor 1; EF-hand, calucium	80.78
1pva_A	110	Parvalbumin; calcium binding; 1.65A {Esox lucius}	80.75
1c7v_A	81	CAVP, calcium vector protein; EF-hand family, calc	80.63
2lvv_A	226	Flagellar calcium-binding protein TB-24; EF-hand,	80.53
3e3r_A	204	Calcyphosin, calcyphosine; human calcyphosine, EF-	80.35
2qac_A	146	Myosin A tail domain interacting protein MTIP; mal	80.11

>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}

Probab=100.00  E-value=5.7e-36  Score=275.86  Aligned_cols=198  Identities=16%  Similarity=0.229  Sum_probs=154.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcc------------------------------------------------cCCCcCC
Q 047952           69 KRVLVYLAAYLGGGSLSFYAVNSQI------------------------------------------------EGLKTNE  100 (354)
Q Consensus        69 ~~~~~~l~~~l~~g~~~~~~~e~~~------------------------------------------------~~~~~~~  100 (354)
                      ..+++..++|+++|+.+|...|.+.                                                .+.+.|+
T Consensus        14 ~lLil~~~~Yl~~GA~vF~~LE~p~E~~~r~~~~~~~~~fl~~~~~~s~~~l~~~~~~~~~a~~~g~~~~~~~~~~~~w~   93 (280)
T 3ukm_A           14 GFLVLGYLLYLVFGAVVFSSVELPYEDLLRQELRKLKRRFLEEHECLSEQQLEQFLGRVLEASNYGVSVLSQASGNWNWD   93 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHTTTCCCC------CCSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhcCCccccCCCCCCCCC
Confidence            3444556789999999998888432                                                1123599


Q ss_pred             chhhhhhhhhhhcccccCccccCCccchhHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccCCccchhhh
Q 047952          101 ILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQEILLVKALHRYQKVGPTDILKEI  180 (354)
Q Consensus       101 ~~~a~yf~~~t~tTvGyGdi~P~t~~~r~~~~~~~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (354)
                      |.+|+||+++|+|||||||++|.|+.||+++++|+++|++++++.++.+++.+.....+...+.++++...++       
T Consensus        94 ~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-------  166 (280)
T 3ukm_A           94 FTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRITVHVTRRPVLYFHIRWGFSK-------  166 (280)
T ss_dssp             HHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTTTTTC------CC-------
T ss_pred             hhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCh-------
Confidence            9999999999999999999999999999999999999999999999999987765433222221111111111       


Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh-cCCccccceeeeeeecccccCCcccCCcC-------chHHHHHHHHHH
Q 047952          181 ETNKVRYKCIIMLVLELVLILVGTIFLVVVE-KMSFVDAFYCVCSTITTLGYGDKSFSTTG-------GRAFGVVWISSS  252 (354)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e-~~~~~da~yf~~vT~tTVGyGD~~p~t~~-------gr~~~~~~i~~g  252 (354)
                      ........+++.++++++++++|+.+|+..| +|+|.||+||+++|+|||||||++|.++.       ||+++++|+++|
T Consensus       167 ~~~~~~~~~~l~~~~~~~~~~~ga~~~~~~E~~~s~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~G  246 (280)
T 3ukm_A          167 QVVAIVHAVLLGFVTVSCFFFIPAAVFSVLEDDWNFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLG  246 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHH
Confidence            0111122334455666778889999999998 89999999999999999999999999986       599999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 047952          253 TMTLAQFFLYVAEFNTEKRQK  273 (354)
Q Consensus       253 ~~~~~~~~~~i~~~~~~~~~~  273 (354)
                      ++++++.++.+.+...+++.+
T Consensus       247 l~~~~~~~~~i~~~~~~~~l~  267 (280)
T 3ukm_A          247 LIAMLVVLETFCELHELKKFR  267 (280)
T ss_dssp             HHHHHHHHHHHHTSHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999988876543

>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}

Probab=100.00  E-value=3.8e-35  Score=274.20  Aligned_cols=195  Identities=22%  Similarity=0.351  Sum_probs=152.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcc------------------------------------------cC---------C
Q 047952           68 FKRVLVYLAAYLGGGSLSFYAVNSQI------------------------------------------EG---------L   96 (354)
Q Consensus        68 ~~~~~~~l~~~l~~g~~~~~~~e~~~------------------------------------------~~---------~   96 (354)
                      +..++++.++|+++|+.+|...|.+.                                          +.         .
T Consensus        32 ~l~Ll~~~~~YL~~GA~vF~~LE~~~E~~~~~~l~~~~~~fl~~~~~~~~~~l~~l~~~v~~A~~~Gv~~~~~~~~~~~~  111 (309)
T 3um7_A           32 LLALLALVLLYLVSGALVFRALEQPHEQQAQRELGEVREKFLRAHPCVSDQELGLLIKEVADALGGGADPETQSTSQSSH  111 (309)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHGGGTSSCCCSCSHHHHHHHHHHHHHHHTTCCCSSCCCC----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhcCCCccccccCCCCC
Confidence            34466778899999999998887443                                          00         1


Q ss_pred             CcCCchhhhhhhhhhhcccccCccccCCccchhHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHH--HHhhccccCCc
Q 047952           97 KTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQEILLVK--ALHRYQKVGPT  174 (354)
Q Consensus        97 ~~~~~~~a~yf~~~t~tTvGyGdi~P~t~~~r~~~~~~~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  174 (354)
                      +.|+|.+|+||+++|+|||||||++|.|+.||+++++|+++|++++++.++.+++.+.+..++...+  .+..+++.++ 
T Consensus       112 ~~w~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~~~~~~~i~~le~~~~~~~~~~-  190 (309)
T 3um7_A          112 SAWDLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGSSLRHGIGHIEAIFLKWHVPP-  190 (309)
T ss_dssp             -CCSHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTTTC--C-
T ss_pred             CCCChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccccch-
Confidence            2399999999999999999999999999999999999999999999999999999887654432211  1111111111 


Q ss_pred             cchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCccccceeeeeeecccccCCcccCCcCch------HHHHHH
Q 047952          175 DILKEIETNKVRYKCIIMLVLELVLILVGTIFLVVVEKMSFVDAFYCVCSTITTLGYGDKSFSTTGGR------AFGVVW  248 (354)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~da~yf~~vT~tTVGyGD~~p~t~~gr------~~~~~~  248 (354)
                            ...+....+...++.+++++++|+++|+..|+|+|.||+||+++|+|||||||++|.+..||      +|+++|
T Consensus       191 ------~~~~~~~~~l~~~~~~~~~l~~ga~~~~~~E~~~~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~  264 (309)
T 3um7_A          191 ------ELVRVLSAMLFLLIGCLLFVLTPTFVFCYMEDWSKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFW  264 (309)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCCCHHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHH
T ss_pred             ------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHH
Confidence                  01111112233445556778899999999999999999999999999999999999999887      499999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 047952          249 ISSSTMTLAQFFLYVAEFNTE  269 (354)
Q Consensus       249 i~~g~~~~~~~~~~i~~~~~~  269 (354)
                      +++|++++++.++.+++.+..
T Consensus       265 il~Gl~~~a~~~~~i~~~~~~  285 (309)
T 3um7_A          265 ILLGLAYFASVLTTIGNWLRV  285 (309)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999988876653

>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A

Probab=99.75  E-value=1.9e-18  Score=136.77  Aligned_cols=85  Identities=20%  Similarity=0.146  Sum_probs=76.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcC-------CccccceeeeeeecccccCCcccCCcCchHHHHHHHHHHHHHHHHHH
Q 047952          188 KCIIMLVLELVLILVGTIFLVVVEKM-------SFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWISSSTMTLAQFF  260 (354)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~e~~-------~~~da~yf~~vT~tTVGyGD~~p~t~~gr~~~~~~i~~g~~~~~~~~  260 (354)
                      ++..+++++++++++++.+++..|+|       +|.||+||+++|+|||||||++|.++.||+++++++++|++++++++
T Consensus         7 ~~l~~~~~~~~~~~~~a~~~~~~E~~~~~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~~~~   86 (103)
T 2k1e_A            7 EAQKAEEELQKVLEEASKKAVEAERGAPGAALISYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVT   86 (103)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCCCGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHHHHHHHHTH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhccCCCCcccccHHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Confidence            44556667777888899999999986       89999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 047952          261 LYVAEFNTEKRQ  272 (354)
Q Consensus       261 ~~i~~~~~~~~~  272 (354)
                      +.+++.+.++.+
T Consensus        87 ~~i~~~~~~~~~   98 (103)
T 2k1e_A           87 AALATDFVRREE   98 (103)
T ss_dssp             HHHHTTGGGHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999998887644

>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A

Probab=99.74  E-value=1.7e-18  Score=131.24  Aligned_cols=78  Identities=32%  Similarity=0.344  Sum_probs=71.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCccccceeeeeeecccccCCcccCCcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047952          190 IIMLVLELVLILVGTIFLVVVEKMSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWISSSTMTLAQFFLYVAEFN  267 (354)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~e~~~~~da~yf~~vT~tTVGyGD~~p~t~~gr~~~~~~i~~g~~~~~~~~~~i~~~~  267 (354)
                      ...+.+++.+++.|+.+|+..|+|++.||+||+++|+|||||||++|.++.||++++++++.|+.++++.++.+++.+
T Consensus         4 ~~~~~l~~~~~~~g~~~~~~~e~~~~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~l   81 (82)
T 3ldc_A            4 TRILLLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL   81 (82)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344556677788999999999999999999999999999999999999999999999999999999999999998765

>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}

Probab=99.74  E-value=1e-18  Score=145.85  Aligned_cols=87  Identities=24%  Similarity=0.345  Sum_probs=78.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhc-------CCccccceeeeeeecccccCCcccCCcCchHHHHHHHHHHHHHHHHH
Q 047952          187 YKCIIMLVLELVLILVGTIFLVVVEK-------MSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWISSSTMTLAQF  259 (354)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~e~-------~~~~da~yf~~vT~tTVGyGD~~p~t~~gr~~~~~~i~~g~~~~~~~  259 (354)
                      ..+..+++++++++++++.+++..|+       |+|.||+||+++|+|||||||++|.++.||+++++++++|+++++++
T Consensus         6 r~~~~~~~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~~   85 (139)
T 3eff_K            6 RAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLV   85 (139)
T ss_dssp             HTHHHHHHHHHHHHHHHHHHHHHTTSSCTTCCCCCHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHHHH
Confidence            34555666777788899999999998       99999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 047952          260 FLYVAEFNTEKRQK  273 (354)
Q Consensus       260 ~~~i~~~~~~~~~~  273 (354)
                      ++.+++.+.+..++
T Consensus        86 ~~~i~~~~~~~~~~   99 (139)
T 3eff_K           86 TAALATWFVGREQE   99 (139)
T ss_dssp             HHHHTTTTTHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999988876543

>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A

Probab=99.74  E-value=5.1e-18  Score=134.29  Aligned_cols=91  Identities=21%  Similarity=0.265  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcccCCCcCCchhhhhhhhhhhcccccCccccCCccchhHHHHHHHHhHHHHHHhHH
Q 047952           68 FKRVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLS  147 (354)
Q Consensus        68 ~~~~~~~l~~~l~~g~~~~~~~e~~~~~~~~~~~~~a~yf~~~t~tTvGyGdi~P~t~~~r~~~~~~~l~Gi~~~~~~~~  147 (354)
                      ....++++++++++++.++++.|+..++..+++|.||+||+++|+|||||||++|.++.||+++++++++|+.++++.++
T Consensus         8 ~l~~~~~~~~~~~~~a~~~~~~E~~~~~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~~~~~   87 (103)
T 2k1e_A            8 AQKAEEELQKVLEEASKKAVEAERGAPGAALISYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTA   87 (103)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCCCGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhccCCCCcccccHHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Confidence            34455666777888999999999876667778999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 047952          148 KAADYLVDKQE  158 (354)
Q Consensus       148 ~~~~~~~~~~~  158 (354)
                      .+++.+.+..+
T Consensus        88 ~i~~~~~~~~~   98 (103)
T 2k1e_A           88 ALATDFVRREE   98 (103)
T ss_dssp             HHHTTGGGHHH
T ss_pred             HHHHHHHHHHH
Confidence            99988865443

>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}

Probab=99.73  E-value=6.4e-18  Score=141.02  Aligned_cols=91  Identities=23%  Similarity=0.377  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcccCCCcCCchhhhhhhhhhhcccccCccccCCccchhHHHHHHHHhHHHHHHhHH
Q 047952           68 FKRVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLS  147 (354)
Q Consensus        68 ~~~~~~~l~~~l~~g~~~~~~~e~~~~~~~~~~~~~a~yf~~~t~tTvGyGdi~P~t~~~r~~~~~~~l~Gi~~~~~~~~  147 (354)
                      +...++++++++++++.+++..|+..++..+|+|.+|+||+++|+|||||||++|.|+.||+++++++++|+++++++++
T Consensus         8 ~~~~~~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~~~~   87 (139)
T 3eff_K            8 AGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTA   87 (139)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSSCTTCCCCCHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHHHHHH
Confidence            44556667778888999999999877777789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 047952          148 KAADYLVDKQE  158 (354)
Q Consensus       148 ~~~~~~~~~~~  158 (354)
                      .+++.+.+..+
T Consensus        88 ~i~~~~~~~~~   98 (139)
T 3eff_K           88 ALATWFVGREQ   98 (139)
T ss_dssp             HHTTTTTHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99988765544

>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A

Probab=99.72  E-value=5.2e-18  Score=132.63  Aligned_cols=82  Identities=30%  Similarity=0.438  Sum_probs=74.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcCCccccceeeeeeecccccCCcccCCcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047952          188 KCIIMLVLELVLILVGTIFLVVVEKMSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWISSSTMTLAQFFLYVAEFN  267 (354)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~da~yf~~vT~tTVGyGD~~p~t~~gr~~~~~~i~~g~~~~~~~~~~i~~~~  267 (354)
                      .+...+.++++++++|+.+|+..|+|+|.||+||+++|+|||||||++|.+..||+++++++++|+++++++++.++..+
T Consensus         6 ~~~~~~~~~~~~~~~g~~~~~~~e~~~~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~   85 (97)
T 3ouf_A            6 EFQVLFVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNV   85 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555666777888999999999999999999999999999999999999999999999999999999999999999877


Q ss_pred             HH
Q 047952          268 TE  269 (354)
Q Consensus       268 ~~  269 (354)
                      ..
T Consensus        86 ~~   87 (97)
T 3ouf_A           86 QL   87 (97)
T ss_dssp             HH
T ss_pred             hH
Confidence            64

>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...

Probab=99.72  E-value=2.5e-17  Score=134.28  Aligned_cols=88  Identities=23%  Similarity=0.368  Sum_probs=77.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcccCCCcCCchhhhhhhhhhhcccccCccccCCccchhHHHHHHHHhHHHHHHhHHHHH
Q 047952           71 VLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAA  150 (354)
Q Consensus        71 ~~~~l~~~l~~g~~~~~~~e~~~~~~~~~~~~~a~yf~~~t~tTvGyGdi~P~t~~~r~~~~~~~l~Gi~~~~~~~~~~~  150 (354)
                      .+..+++++++++.+++..|++.+++.+|+|.||+||+++|+|||||||++|.|+.||++++++++.|+.++++.++.++
T Consensus        32 ~~~~~~~~~~~~a~~~~~~E~~~~~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~  111 (122)
T 2ih3_C           32 ATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALA  111 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhheeeecCCCCccCccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455566778888899999876677789999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 047952          151 DYLVDKQE  158 (354)
Q Consensus       151 ~~~~~~~~  158 (354)
                      +.+.+..+
T Consensus       112 ~~~~~~~~  119 (122)
T 2ih3_C          112 TWFVGREQ  119 (122)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            98876554

>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A

Probab=99.71  E-value=7.2e-18  Score=135.78  Aligned_cols=79  Identities=29%  Similarity=0.412  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCccccceeeeeeecccccCCcccCCcCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047952          190 IIMLVLELVLILVGTIFLVVVEKMSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWISSSTMTLAQFFLYVAEFNT  268 (354)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~e~~~~~da~yf~~vT~tTVGyGD~~p~t~~gr~~~~~~i~~g~~~~~~~~~~i~~~~~  268 (354)
                      ...+.++++++++|+++|+..|+|+|.||+||+++|+|||||||++|.++.||+++++++++|++++++.++.+++.+.
T Consensus        25 ~~~~~~~~~~~~~g~~~~~~~e~~~~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~  103 (114)
T 2q67_A           25 QVLFVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQ  103 (114)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455566677788999999999999999999999999999999999999999999999999999999999999998764

>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A

Probab=99.71  E-value=3.2e-17  Score=124.18  Aligned_cols=79  Identities=25%  Similarity=0.552  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcccCCCcCCchhhhhhhhhhhcccccCccccCCccchhHHHHHHHHhHHHHHHhHH
Q 047952           68 FKRVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLS  147 (354)
Q Consensus        68 ~~~~~~~l~~~l~~g~~~~~~~e~~~~~~~~~~~~~a~yf~~~t~tTvGyGdi~P~t~~~r~~~~~~~l~Gi~~~~~~~~  147 (354)
                      ..+++.+++++++.++..|+..|+       |+|.||+||+++|+|||||||++|.|+.||++++++++.|++++++.++
T Consensus         3 ~~~~~~l~~~~~~~g~~~~~~~e~-------~~~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~   75 (82)
T 3ldc_A            3 ATRILLLVLAVIIYGTAGFHFIEG-------ESWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVE   75 (82)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc-------CCHHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence            345566677888899999998887       8999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHH
Q 047952          148 KAADYL  153 (354)
Q Consensus       148 ~~~~~~  153 (354)
                      .+++.+
T Consensus        76 ~i~~~l   81 (82)
T 3ldc_A           76 RLLEFL   81 (82)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998765

>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1

Probab=99.70  E-value=2e-17  Score=140.20  Aligned_cols=88  Identities=24%  Similarity=0.401  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccCCCcCCchhhhhhhhhhhcccccCccccCCccchhHHHHHHHHhHHHHHHhHHHH
Q 047952           70 RVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKA  149 (354)
Q Consensus        70 ~~~~~l~~~l~~g~~~~~~~e~~~~~~~~~~~~~a~yf~~~t~tTvGyGdi~P~t~~~r~~~~~~~l~Gi~~~~~~~~~~  149 (354)
                      ..++.+++++++++.+++..|+..++..+++|.+|+||+++|+|||||||++|.|+.||+++++++++|++++++.++.+
T Consensus        54 ~~~~~~~~~i~~~a~~~~~~E~~~~~~~~~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i  133 (155)
T 2a9h_A           54 AATVLLVIVLLAGSYLAVLAERGAPGAALISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAV  133 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSSCSSTTSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCCCCccCcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445566778899999999987667778899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 047952          150 ADYLVDKQ  157 (354)
Q Consensus       150 ~~~~~~~~  157 (354)
                      ++.+.+..
T Consensus       134 ~~~~~~~~  141 (155)
T 2a9h_A          134 ATWFVGRE  141 (155)
T ss_dssp             HHHHHSCC
T ss_pred             HHHHHHHH
Confidence            99887543

>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...

Probab=99.69  E-value=1.8e-17  Score=135.17  Aligned_cols=82  Identities=26%  Similarity=0.412  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhc-------CCccccceeeeeeecccccCCcccCCcCchHHHHHHHHHHHHHHHHHHHHH
Q 047952          191 IMLVLELVLILVGTIFLVVVEK-------MSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWISSSTMTLAQFFLYV  263 (354)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~e~-------~~~~da~yf~~vT~tTVGyGD~~p~t~~gr~~~~~~i~~g~~~~~~~~~~i  263 (354)
                      ..+..+++++++++.+++..|+       |+|.||+||+++|+|||||||++|.|+.||++++++++.|++++++.++.+
T Consensus        31 ~~~~~~~~~~~~~a~~~~~~E~~~~~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i  110 (122)
T 2ih3_C           31 AATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAAL  110 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhheeeecCCCCccCccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555667788899999997       899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 047952          264 AEFNTEKRQ  272 (354)
Q Consensus       264 ~~~~~~~~~  272 (354)
                      ++.+.+..+
T Consensus       111 ~~~~~~~~~  119 (122)
T 2ih3_C          111 ATWFVGREQ  119 (122)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999997654

>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A

Probab=99.69  E-value=9.1e-17  Score=125.57  Aligned_cols=84  Identities=32%  Similarity=0.566  Sum_probs=73.9

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcCCchhhhhhhhhhhcccccCccccCCccchhHHHHHHHHhHHHHHH
Q 047952           65 RPNFKRVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGM  144 (354)
Q Consensus        65 ~~~~~~~~~~l~~~l~~g~~~~~~~e~~~~~~~~~~~~~a~yf~~~t~tTvGyGdi~P~t~~~r~~~~~~~l~Gi~~~~~  144 (354)
                      .+.+..+++++++++++|+..|+..|+       |+|.||+||+++|+|||||||++|.|+.||+++++++++|++++++
T Consensus         4 ~~~~~~~~~~~~~~~~~g~~~~~~~e~-------~~~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~   76 (97)
T 3ouf_A            4 DKEFQVLFVLTILTLISGTIFYSTVEG-------LRPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFG   76 (97)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHSC-------CCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcC-------CCHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHH
Confidence            345566667777788888888877765       9999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHH
Q 047952          145 FLSKAADYLVD  155 (354)
Q Consensus       145 ~~~~~~~~~~~  155 (354)
                      .++.+++.+..
T Consensus        77 ~i~~i~~~~~~   87 (97)
T 3ouf_A           77 FIHKLAVNVQL   87 (97)
T ss_dssp             HHHHHHHHTHH
T ss_pred             HHHHHHHHHhH
Confidence            99999887753

>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}

Probab=99.69  E-value=2e-17  Score=139.43  Aligned_cols=79  Identities=29%  Similarity=0.398  Sum_probs=71.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcCCccccceeeeeeecccccCCcccCCcCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 047952          188 KCIIMLVLELVLILVGTIFLVVVEKMSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWISSSTMTLAQFFLYVAEF  266 (354)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~da~yf~~vT~tTVGyGD~~p~t~~gr~~~~~~i~~g~~~~~~~~~~i~~~  266 (354)
                      .+...++++++++++|+++|+..|+|+|.||+||+++|+|||||||++|.++.||+++++++++|+++++++++.+++.
T Consensus        26 ~~~~~~~~~~~~~~~g~~~~~~~e~~~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~  104 (148)
T 3vou_A           26 EFQVLFVLTFLTLTSGTIFYSTVEGLRPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVN  104 (148)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445566667778889999999999999999999999999999999999999999999999999999999999998763

>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A

Probab=99.68  E-value=3.7e-18  Score=142.00  Aligned_cols=68  Identities=22%  Similarity=0.278  Sum_probs=59.5

Q ss_pred             HHHHHHHHHh--cCCccccceeeeeeecccccCCcccCCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047952          202 VGTIFLVVVE--KMSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWISSSTMTLAQFFLYVAEFNTE  269 (354)
Q Consensus       202 ~~~~~~~~~e--~~~~~da~yf~~vT~tTVGyGD~~p~t~~gr~~~~~~i~~g~~~~~~~~~~i~~~~~~  269 (354)
                      +++..++..|  .|+|.||+||+++|+|||||||++|.|+.||+++++++++|+++++++++.+++.+.+
T Consensus        29 ~~~~~~~~~e~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~   98 (137)
T 4h33_A           29 IIPVPMVFIEPEINNYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRC   98 (137)
T ss_dssp             HTHHHHHHHCSSCCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333334444  5999999999999999999999999999999999999999999999999999988764

>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1

Probab=99.67  E-value=2.2e-17  Score=139.96  Aligned_cols=81  Identities=30%  Similarity=0.422  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcC-------CccccceeeeeeecccccCCcccCCcCchHHHHHHHHHHHHHHHHHHHHH
Q 047952          191 IMLVLELVLILVGTIFLVVVEKM-------SFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWISSSTMTLAQFFLYV  263 (354)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~e~~-------~~~da~yf~~vT~tTVGyGD~~p~t~~gr~~~~~~i~~g~~~~~~~~~~i  263 (354)
                      ..++.+++++++++.+++..|++       +|.||+||+++|+|||||||++|.|+.||+++++++++|+++++++++.+
T Consensus        54 ~~~~~~~~~i~~~a~~~~~~E~~~~~~~~~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i  133 (155)
T 2a9h_A           54 AATVLLVIVLLAGSYLAVLAERGAPGAALISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAV  133 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSSCSSTTSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCCCCccCcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445556678899999999987       89999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 047952          264 AEFNTEKR  271 (354)
Q Consensus       264 ~~~~~~~~  271 (354)
                      ++.+.++.
T Consensus       134 ~~~~~~~~  141 (155)
T 2a9h_A          134 ATWFVGRE  141 (155)
T ss_dssp             HHHHHSCC
T ss_pred             HHHHHHHH
Confidence            99988754

>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A

Probab=99.66  E-value=3e-16  Score=126.29  Aligned_cols=82  Identities=30%  Similarity=0.552  Sum_probs=72.9

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcCCchhhhhhhhhhhcccccCccccCCccchhHHHHHHHHhHHHHHH
Q 047952           65 RPNFKRVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGM  144 (354)
Q Consensus        65 ~~~~~~~~~~l~~~l~~g~~~~~~~e~~~~~~~~~~~~~a~yf~~~t~tTvGyGdi~P~t~~~r~~~~~~~l~Gi~~~~~  144 (354)
                      ++++...++++++++++|+.+|+..|+       |+|.||+||+++|+|||||||++|.|+.||++++++++.|++++++
T Consensus        21 ~~~~~~~~~~~~~~~~~g~~~~~~~e~-------~~~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~   93 (114)
T 2q67_A           21 DKEFQVLFVLTILTLISGTIFYSTVEG-------LRPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFG   93 (114)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHSC-------CCHHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhcC-------CCHHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHH
Confidence            344566666777788888888887776       9999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHH
Q 047952          145 FLSKAADYL  153 (354)
Q Consensus       145 ~~~~~~~~~  153 (354)
                      .++.+++.+
T Consensus        94 ~~~~l~~~~  102 (114)
T 2q67_A           94 FIHKLAVNV  102 (114)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988876

>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A

Probab=99.64  E-value=9.7e-17  Score=133.38  Aligned_cols=83  Identities=25%  Similarity=0.517  Sum_probs=67.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcccCCCcCCchhhhhhhhhhhcccccCccccCCccchhHHHHHHHHhHHHHHHhHH
Q 047952           68 FKRVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLS  147 (354)
Q Consensus        68 ~~~~~~~l~~~l~~g~~~~~~~e~~~~~~~~~~~~~a~yf~~~t~tTvGyGdi~P~t~~~r~~~~~~~l~Gi~~~~~~~~  147 (354)
                      +..+++++++.+++++..+++.|.     +.|+|.||+||+++|+|||||||++|.|+.||+++++++++|++++++.++
T Consensus        16 l~~~l~~~~~~~~~~~~~~~~~e~-----~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~   90 (137)
T 4h33_A           16 LNRFLMIFVLLVIIIPVPMVFIEP-----EINNYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITS   90 (137)
T ss_dssp             HHHHHHHHHHHHHHTHHHHHHHCS-----SCCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444555555555654     348999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 047952          148 KAADYLVD  155 (354)
Q Consensus       148 ~~~~~~~~  155 (354)
                      .+++.+.+
T Consensus        91 ~i~~~~~~   98 (137)
T 4h33_A           91 TITNFFRC   98 (137)
T ss_dssp             HHHTTTTT
T ss_pred             HHHHHHHH
Confidence            99987754

>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}

Probab=99.63  E-value=9.6e-16  Score=129.10  Aligned_cols=79  Identities=33%  Similarity=0.579  Sum_probs=69.8

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcCCchhhhhhhhhhhcccccCccccCCccchhHHHHHHHHhHHHHHHh
Q 047952           66 PNFKRVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMF  145 (354)
Q Consensus        66 ~~~~~~~~~l~~~l~~g~~~~~~~e~~~~~~~~~~~~~a~yf~~~t~tTvGyGdi~P~t~~~r~~~~~~~l~Gi~~~~~~  145 (354)
                      +.+..+++++++++++|+++|+..|+       |+|.||+||+++|+|||||||++|.|+.||+++++++++|+++++++
T Consensus        25 ~~~~~~~~~~~~~~~~g~~~~~~~e~-------~~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~   97 (148)
T 3vou_A           25 KEFQVLFVLTFLTLTSGTIFYSTVEG-------LRPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGF   97 (148)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTSC-------CCHHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcC-------CCHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHH
Confidence            34555666777778888888877765       99999999999999999999999999999999999999999999999


Q ss_pred             HHHHHH
Q 047952          146 LSKAAD  151 (354)
Q Consensus       146 ~~~~~~  151 (354)
                      ++.++.
T Consensus        98 ~~~~~~  103 (148)
T 3vou_A           98 IHKLAV  103 (148)
T ss_dssp             HHHHHC
T ss_pred             HHHHHH
Confidence            998876

>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A

Probab=99.58  E-value=2.4e-18  Score=147.81  Aligned_cols=81  Identities=26%  Similarity=0.389  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhc-------CCccccceeeeeeecccccCCcccCCcCchHHHHHHHHHHHHHHHHHHHHHH
Q 047952          192 MLVLELVLILVGTIFLVVVEK-------MSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWISSSTMTLAQFFLYVA  264 (354)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~e~-------~~~~da~yf~~vT~tTVGyGD~~p~t~~gr~~~~~~i~~g~~~~~~~~~~i~  264 (354)
                      .++++++++++++.+++..|+       |+|.||+||+++|+|||||||++|.+..||+++++++++|+++++++++.++
T Consensus        38 ~~~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~  117 (166)
T 3pjs_K           38 ATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALA  117 (166)
T ss_dssp             TSSSSTTTTTTTSSSSSSTTSSSTTCCCCSTTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSS
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCcccCCHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334445566777888888888       9999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 047952          265 EFNTEKRQ  272 (354)
Q Consensus       265 ~~~~~~~~  272 (354)
                      +.+.+..+
T Consensus       118 ~~~~~~~~  125 (166)
T 3pjs_K          118 TWFVGQEQ  125 (166)
T ss_dssp             SSSSSSHH
T ss_pred             HHHHHHHH
Confidence            88876443

>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A

Probab=99.55  E-value=3.2e-17  Score=140.85  Aligned_cols=83  Identities=25%  Similarity=0.410  Sum_probs=73.1

Q ss_pred             HHHHHHHHHHHHHHHHhhhcccCCCcCCchhhhhhhhhhhcccccCccccCCccchhHHHHHHHHhHHHHHHhHHHHHHH
Q 047952           73 VYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAADY  152 (354)
Q Consensus        73 ~~l~~~l~~g~~~~~~~e~~~~~~~~~~~~~a~yf~~~t~tTvGyGdi~P~t~~~r~~~~~~~l~Gi~~~~~~~~~~~~~  152 (354)
                      +++++++++++++++..|...++...|+|.+|+||+++|+|||||||++|.|+.||+++++++++|+++++++++.+++.
T Consensus        40 ~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~  119 (166)
T 3pjs_K           40 VLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATW  119 (166)
T ss_dssp             SSSTTTTTTTSSSSSSTTSSSTTCCCCSTTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSS
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCcccCCHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455667778888888877667777999999999999999999999999999999999999999999999999998877


Q ss_pred             HHH
Q 047952          153 LVD  155 (354)
Q Consensus       153 ~~~  155 (354)
                      +.+
T Consensus       120 ~~~  122 (166)
T 3pjs_K          120 FVG  122 (166)
T ss_dssp             SSS
T ss_pred             HHH
Confidence            654

>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A

Probab=99.54  E-value=3.9e-14  Score=127.08  Aligned_cols=82  Identities=23%  Similarity=0.327  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc-------CCccccceeeeeeecccccCCcccCCcCchHHHHHHHHHHHHHHHHHHH
Q 047952          189 CIIMLVLELVLILVGTIFLVVVEK-------MSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWISSSTMTLAQFFL  261 (354)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~e~-------~~~~da~yf~~vT~tTVGyGD~~p~t~~gr~~~~~~i~~g~~~~~~~~~  261 (354)
                      +...+..+++++.+++.+++..|+       ++|.||+||+++|+|||||||++|.|+.||++++++++.|+++++++++
T Consensus       133 l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~  212 (223)
T 1orq_C          133 FYHLFGAVMLTVLYGAFAIYIVEYPDPNSSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIG  212 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSSSTTCSCCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCcCCCcCcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHH
Confidence            334445555667778888889998       8999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 047952          262 YVAEFNTEK  270 (354)
Q Consensus       262 ~i~~~~~~~  270 (354)
                      .+++.+.++
T Consensus       213 ~i~~~~~~~  221 (223)
T 1orq_C          213 TVSNMFQKI  221 (223)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999988864

>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A

Probab=99.54  E-value=1.3e-14  Score=130.14  Aligned_cols=88  Identities=22%  Similarity=0.450  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcccCCCcCCchhhhhhhhhhhcccccCccccCCccchhHHHHHHHHhHHHHHHhHHH
Q 047952           69 KRVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSK  148 (354)
Q Consensus        69 ~~~~~~l~~~l~~g~~~~~~~e~~~~~~~~~~~~~a~yf~~~t~tTvGyGdi~P~t~~~r~~~~~~~l~Gi~~~~~~~~~  148 (354)
                      ..++.++++++++++++++..|++.+++++++|.+|+||+++|+||+||||++|.|+.||++++++++.|+.++++.++.
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~~  213 (223)
T 1orq_C          134 YHLFGAVMLTVLYGAFAIYIVEYPDPNSSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGT  213 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTSSSTTCSCCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCcCCCcCcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            33455566677778888899987666667799999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 047952          149 AADYLVDK  156 (354)
Q Consensus       149 ~~~~~~~~  156 (354)
                      +++.+.++
T Consensus       214 i~~~~~~~  221 (223)
T 1orq_C          214 VSNMFQKI  221 (223)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99988653

>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}

Probab=99.50  E-value=2.6e-14  Score=131.52  Aligned_cols=84  Identities=20%  Similarity=0.337  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcccCCCcCCchhhhhhhhhhhcccccCccccCCcc-------chhHHHHHHHHhHHHHH
Q 047952           71 VLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVV-------SKLLSCAFVFTGMGLVG  143 (354)
Q Consensus        71 ~~~~l~~~l~~g~~~~~~~e~~~~~~~~~~~~~a~yf~~~t~tTvGyGdi~P~t~~-------~r~~~~~~~l~Gi~~~~  143 (354)
                      .++++++++++|+.+|+..|++      |+|.||+||+++|+|||||||++|.++.       +|+++++|+++|+++++
T Consensus       178 ~~~~~~~~~~~ga~~~~~~E~~------~s~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~  251 (280)
T 3ukm_A          178 GFVTVSCFFFIPAAVFSVLEDD------WNFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAML  251 (280)
T ss_dssp             HHHHHHHHTHHHHHHHHHHSSS------CCHHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhHHHHHHHHHhcC------CchhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHH
Confidence            4455667788899999888832      9999999999999999999999999986       59999999999999999


Q ss_pred             HhHHHHHHHHHHHHHHH
Q 047952          144 MFLSKAADYLVDKQEIL  160 (354)
Q Consensus       144 ~~~~~~~~~~~~~~~~~  160 (354)
                      +.++.+.+....++.+.
T Consensus       252 ~~~~~i~~~~~~~~l~~  268 (280)
T 3ukm_A          252 VVLETFCELHELKKFRK  268 (280)
T ss_dssp             HHHHHHHTSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999998776554443

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=99.49  E-value=1.1e-14  Score=147.86  Aligned_cols=134  Identities=17%  Similarity=0.218  Sum_probs=91.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH----Hhc--CCccccceeeeeeecccccCCcccCCcCchHHHHHHHHHHHHHHHHHHHH
Q 047952          189 CIIMLVLELVLILVGTIFLVV----VEK--MSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWISSSTMTLAQFFLY  262 (354)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~----~e~--~~~~da~yf~~vT~tTVGyGD~~p~t~~gr~~~~~~i~~g~~~~~~~~~~  262 (354)
                      +...++++++++++++++|++    .|+  |+|+||+||+++|+|||||||++|.++.||+|+++++++|+++++++++.
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~~   99 (565)
T 4gx0_A           20 LLLYCAFLLVMLLAYASIFRYLMWHLEGRAYSFMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPF   99 (565)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444555566665555    566  99999999999999999999999999999999999999999999999998


Q ss_pred             -HHHHHHHHHHHHHHHHHHhccccccch---hhhcccCCCccchHHHHHHHHHHcCC------CCHHHHHHHHHH
Q 047952          263 -VAEFNTEKRQKALVNWVLTRKMTHVDL---EAADIDEDGVVSAAEFIIYKLKEMGK------ISQEDIALVMEE  327 (354)
Q Consensus       263 -i~~~~~~~~~~~~~~~~~~r~~~~~~l---~~~~l~~~g~v~~~e~v~~~l~~~~~------~~~~~l~~i~~~  327 (354)
                       +++.+.+...+..   ...+++.+...   ..--+-|.|+++.  .+...|.+.+.      .+++.++++.+.
T Consensus       100 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~hviI~G~g~~g~--~la~~L~~~~~~vvvid~~~~~~~~~~~~  169 (565)
T 4gx0_A          100 GFVSMFLAPWIERR---LRYHPTIELPDDTRGHILIFGIDPITR--TLIRKLESRNHLFVVVTDNYDQALHLEEQ  169 (565)
T ss_dssp             HHHHHHHHHHHHHH---TSCCCBCCCCTTCCSCEEEESCCHHHH--HHHHHTTTTTCCEEEEESCHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHH---HHhhcccccccccCCeEEEECCChHHH--HHHHHHHHCCCCEEEEECCHHHHHHHHHh
Confidence             7777766543222   11222221100   0011226666665  77777877663      346666665554

>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*

Probab=99.49  E-value=9e-14  Score=130.02  Aligned_cols=76  Identities=24%  Similarity=0.353  Sum_probs=64.3

Q ss_pred             HHHHHHHHHhhhcccCCCcCCchhhhhhhhhhhcccccCccccCCccchhHHHHHHHHhHHHHHHhHHHHHHHHHH
Q 047952           80 GGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYLVD  155 (354)
Q Consensus        80 ~~g~~~~~~~e~~~~~~~~~~~~~a~yf~~~t~tTvGyGdi~P~t~~~r~~~~~~~l~Gi~~~~~~~~~~~~~~~~  155 (354)
                      ++.+.+|+..+...++..+++|.+|+||+++|+|||||||++|.++.||+++++++++|+.++++.++.+...+.+
T Consensus        62 l~fa~ly~~~~~~~~~~~~~s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~~  137 (301)
T 1xl4_A           62 ALFALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTR  137 (301)
T ss_dssp             HHHHHHHHHTCSCSTTSCTTCHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHhhccccCCCCcCCHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4445556665544455567999999999999999999999999999999999999999999999999888877643

>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*

Probab=99.46  E-value=7.7e-14  Score=131.95  Aligned_cols=97  Identities=21%  Similarity=0.306  Sum_probs=70.3

Q ss_pred             HhhcCCcchHHHHHHHH-HHHHHHHHHHHHHhhhc-ccCCCcCCchhhhhhhhhhhcccccCccccCCccchhHHHHHHH
Q 047952           59 SLFGKPRPNFKRVLVYL-AAYLGGGSLSFYAVNSQ-IEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVF  136 (354)
Q Consensus        59 ~~~~~~~~~~~~~~~~l-~~~l~~g~~~~~~~e~~-~~~~~~~~~~~a~yf~~~t~tTvGyGdi~P~t~~~r~~~~~~~l  136 (354)
                      ..++..++.+..+++++ ++.+++++++ |+.+.. ..+..+++|.+|+||+++|+|||||||++|.++.||++++++++
T Consensus        54 ~~l~~~~~~ll~~~~~~~l~~~l~fall-y~~e~~~~~~~~~~s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l  132 (333)
T 1p7b_A           54 WALKVSWPVFFASLAALFVVNNTLFALL-YQLGDAPIANQSPPGFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIF  132 (333)
T ss_dssp             HHHHSCHHHHHHHHHHHHHHHHHHHHTT-TSSSSSCCCCSSSSSTHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHH-HHHhcccccCCCCCcHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHH
Confidence            33344444433333322 2333444554 444432 34445689999999999999999999999999999999999999


Q ss_pred             HhHHHHHHhHHHHHHHHHHH
Q 047952          137 TGMGLVGMFLSKAADYLVDK  156 (354)
Q Consensus       137 ~Gi~~~~~~~~~~~~~~~~~  156 (354)
                      +|+.++++.++.+...+.+.
T Consensus       133 ~G~~~~a~~ig~i~~~~~~~  152 (333)
T 1p7b_A          133 VGMSGIALSTGLVFARFARP  152 (333)
T ss_dssp             HHHHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999999999988877543

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=99.44  E-value=3.2e-16  Score=149.13  Aligned_cols=115  Identities=27%  Similarity=0.250  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCccccceeeeeeecccccCCcccCCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047952          193 LVLELVLILVGTIFLVVVEKMSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWISSSTMTLAQFFLYVAEFNTEKRQ  272 (354)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~e~~~~~da~yf~~vT~tTVGyGD~~p~t~~gr~~~~~~i~~g~~~~~~~~~~i~~~~~~~~~  272 (354)
                      ++++++++++|+++|+..|+|+|.||+||+++|+|||||||++|.|..||+|+++++++|+++++++++.+++.+.+++.
T Consensus        24 ~~~~~~~~~~~~~~~~~~e~~~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  103 (336)
T 1lnq_A           24 LLLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINREQ  103 (336)
T ss_dssp             TTTTTTSHHHHTTTTTTSSSCCSSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC-----
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445567788999999999999999999999999999999999999999999999999999999999999998887654


Q ss_pred             HHHHHHHHhccccccchhhhcccCCCccchHHHHHHHHHHcC
Q 047952          273 KALVNWVLTRKMTHVDLEAADIDEDGVVSAAEFIIYKLKEMG  314 (354)
Q Consensus       273 ~~~~~~~~~r~~~~~~l~~~~l~~~g~v~~~e~v~~~l~~~~  314 (354)
                      +...+   .+++...  ..--+-|.|+++.  .+...|.+.|
T Consensus       104 ~~~~~---~~~~~~~--~~viI~G~G~~g~--~l~~~L~~~g  138 (336)
T 1lnq_A          104 MKLMG---LIDVAKS--RHVVICGWSESTL--ECLRELRGSE  138 (336)
T ss_dssp             -----------------CEEEEESCCHHHH--HHHTTGGGSC
T ss_pred             HHHHh---hhhhccc--CCEEEECCcHHHH--HHHHHHHhCC
Confidence            33222   2233210  1112346677775  6777776665

>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*

Probab=99.43  E-value=2.6e-13  Score=129.99  Aligned_cols=94  Identities=24%  Similarity=0.468  Sum_probs=79.2

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcCCchhhhhhhhhhhcccccCccccCCccchhHHHHHHHHhHHHHHH
Q 047952           65 RPNFKRVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGM  144 (354)
Q Consensus        65 ~~~~~~~~~~l~~~l~~g~~~~~~~e~~~~~~~~~~~~~a~yf~~~t~tTvGyGdi~P~t~~~r~~~~~~~l~Gi~~~~~  144 (354)
                      .+.+..++.++++++.+++++++..|+..++..+.+|.+|+||+++|+||+||||++|.|+.||++++++++.|+.++++
T Consensus       126 ~~~l~~~~~~~~~~~~~~a~~~~~~e~~~~~~~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~  205 (355)
T 3beh_A          126 ARNLIGVTTLFGVVLFAVALAAYVIERDIQPEKFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGL  205 (355)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHH
Confidence            34444555556667777888888888765555567999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHH
Q 047952          145 FLSKAADYLVDKQE  158 (354)
Q Consensus       145 ~~~~~~~~~~~~~~  158 (354)
                      .++.+++.+.+..+
T Consensus       206 ~~~~i~~~~~~~~~  219 (355)
T 3beh_A          206 WAGILATGFYQEVR  219 (355)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999988876544

>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}

Probab=99.43  E-value=6.8e-13  Score=125.03  Aligned_cols=57  Identities=25%  Similarity=0.454  Sum_probs=54.0

Q ss_pred             CCchhhhhhhhhhhcccccCccccCCccchhHHHHHHHHhHHHHHHhHHHHHHHHHH
Q 047952           99 NEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYLVD  155 (354)
Q Consensus        99 ~~~~~a~yf~~~t~tTvGyGdi~P~t~~~r~~~~~~~l~Gi~~~~~~~~~~~~~~~~  155 (354)
                      ++|.+|+||+++|+|||||||++|.+..||+++++++++|+.++++.++.+.+.+.+
T Consensus        77 ~s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~  133 (321)
T 2qks_A           77 AGFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQ  133 (321)
T ss_dssp             TTHHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             cchhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            599999999999999999999999999999999999999999999999998887754

>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}

Probab=99.42  E-value=2.9e-13  Score=126.40  Aligned_cols=75  Identities=25%  Similarity=0.435  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHHHHHHHhhhcccCCCcCCchhhhhhhhhhhcccccCccccCCccchh------HHHHHHHHhHHHHHHhH
Q 047952           73 VYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKL------LSCAFVFTGMGLVGMFL  146 (354)
Q Consensus        73 ~~l~~~l~~g~~~~~~~e~~~~~~~~~~~~~a~yf~~~t~tTvGyGdi~P~t~~~r~------~~~~~~l~Gi~~~~~~~  146 (354)
                      +.+++++++|+++|+..|+       |+|.||+||+++|+|||||||++|.+..||.      ++++|+++|++++++.+
T Consensus       204 ~~~~~~l~~ga~~~~~~E~-------~~~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~  276 (309)
T 3um7_A          204 IGCLLFVLTPTFVFCYMED-------WSKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVL  276 (309)
T ss_dssp             HHHHHHTHHHHHHHHHHHC-------CCHHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcC-------CCHHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHH
Confidence            3445678889999988886       9999999999999999999999999999985      99999999999999999


Q ss_pred             HHHHHHHH
Q 047952          147 SKAADYLV  154 (354)
Q Consensus       147 ~~~~~~~~  154 (354)
                      +.+++++.
T Consensus       277 ~~i~~~~~  284 (309)
T 3um7_A          277 TTIGNWLR  284 (309)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHHH
Confidence            99888664

>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*

Probab=99.36  E-value=7.5e-13  Score=126.75  Aligned_cols=86  Identities=20%  Similarity=0.196  Sum_probs=74.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcC-------CccccceeeeeeecccccCCcccCCcCchHHHHHHHHHHHHHHHHHH
Q 047952          188 KCIIMLVLELVLILVGTIFLVVVEKM-------SFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWISSSTMTLAQFF  260 (354)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~e~~-------~~~da~yf~~vT~tTVGyGD~~p~t~~gr~~~~~~i~~g~~~~~~~~  260 (354)
                      .+...+.++++++.+++.+++..|++       ++.||+||+++|+|||||||++|.++.||++++++++.|++++++++
T Consensus       128 ~l~~~~~~~~~~~~~~a~~~~~~e~~~~~~~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~  207 (355)
T 3beh_A          128 NLIGVTTLFGVVLFAVALAAYVIERDIQPEKFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWA  207 (355)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Confidence            34444555556677888888888875       89999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 047952          261 LYVAEFNTEKRQK  273 (354)
Q Consensus       261 ~~i~~~~~~~~~~  273 (354)
                      +.+++.+.+..++
T Consensus       208 ~~i~~~~~~~~~~  220 (355)
T 3beh_A          208 GILATGFYQEVRR  220 (355)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999988875443

>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*

Probab=99.33  E-value=7.6e-12  Score=125.47  Aligned_cols=74  Identities=26%  Similarity=0.333  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHHHHhc-------CCccccceeeeeeecccccCCcccCCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047952          198 VLILVGTIFLVVVEK-------MSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWISSSTMTLAQFFLYVAEFNTEK  270 (354)
Q Consensus       198 ~~~~~~~~~~~~~e~-------~~~~da~yf~~vT~tTVGyGD~~p~t~~gr~~~~~~i~~g~~~~~~~~~~i~~~~~~~  270 (354)
                      +++++|++++ ..|+       .++.+|+||+++|+|||||||++|.+..||+|+++++++|+++++++++.+.+.+.+.
T Consensus       353 ~~~if~~~~~-~~e~~~~~~~F~s~~~a~y~~~vT~TTvGYGDi~P~t~~gr~f~~~~~l~G~~~l~l~iavI~~~f~~~  431 (514)
T 2r9r_B          353 GVILFSSAVY-FAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYF  431 (514)
T ss_dssp             HHHHHHHHHH-HHHTTCTTCSCSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             HHHHHHhhhh-eeeccCCCccccchhhhhheeeeEEEecccCCCCCCCcchHhhehhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444 5565       3899999999999999999999999999999999999999999999999999887764


Q ss_pred             HH
Q 047952          271 RQ  272 (354)
Q Consensus       271 ~~  272 (354)
                      ..
T Consensus       432 ~~  433 (514)
T 2r9r_B          432 YH  433 (514)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*

Probab=99.33  E-value=9e-13  Score=123.25  Aligned_cols=69  Identities=19%  Similarity=0.151  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHhc-------CCccccceeeeeeecccccCCcccCCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047952          201 LVGTIFLVVVEK-------MSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWISSSTMTLAQFFLYVAEFNTE  269 (354)
Q Consensus       201 ~~~~~~~~~~e~-------~~~~da~yf~~vT~tTVGyGD~~p~t~~gr~~~~~~i~~g~~~~~~~~~~i~~~~~~  269 (354)
                      ++.+.+|+..++       ++|.||+||+++|+|||||||++|.++.||+++++++++|+++++++++.+.+.+.+
T Consensus        62 l~fa~ly~~~~~~~~~~~~~s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~~  137 (301)
T 1xl4_A           62 ALFALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTR  137 (301)
T ss_dssp             HHHHHHHHHTCSCSTTSCTTCHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHhhccccCCCCcCCHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            444445666542       789999999999999999999999999999999999999999999999988877753

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=99.30  E-value=3e-14  Score=135.47  Aligned_cols=83  Identities=22%  Similarity=0.515  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcccCCCcCCchhhhhhhhhhhcccccCccccCCccchhHHHHHHHHhHHHHHHhHHHHH
Q 047952           71 VLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAA  150 (354)
Q Consensus        71 ~~~~l~~~l~~g~~~~~~~e~~~~~~~~~~~~~a~yf~~~t~tTvGyGdi~P~t~~~r~~~~~~~l~Gi~~~~~~~~~~~  150 (354)
                      .++++++++++|+++|++.|+       |+|.+|+||+++|+|||||||++|.|+.||+++++++++|++++++.++.+.
T Consensus        23 ~~~~~~~~~~~~~~~~~~~e~-------~~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~   95 (336)
T 1lnq_A           23 ILLLVLAVIIYGTAGFHFIEG-------ESWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLL   95 (336)
T ss_dssp             STTTTTTSHHHHTTTTTTSSS-------CCSSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHhC-------CCHHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334455567778888877776       8999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 047952          151 DYLVDKQEIL  160 (354)
Q Consensus       151 ~~~~~~~~~~  160 (354)
                      +.+.+...+.
T Consensus        96 ~~~~~~~~~~  105 (336)
T 1lnq_A           96 EFLINREQMK  105 (336)
T ss_dssp             TTC-------
T ss_pred             HHHHHHHHHH
Confidence            8887655443

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=99.29  E-value=3.8e-12  Score=129.24  Aligned_cols=88  Identities=20%  Similarity=0.334  Sum_probs=69.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcccCCCcCCchhhhhhhhhhhcccccCccccCCccchhHHHHHHHHhHHHHHHhHH
Q 047952           68 FKRVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLS  147 (354)
Q Consensus        68 ~~~~~~~l~~~l~~g~~~~~~~e~~~~~~~~~~~~~a~yf~~~t~tTvGyGdi~P~t~~~r~~~~~~~l~Gi~~~~~~~~  147 (354)
                      +...++++++++++++++|++.+...++ ..|+|.+|+||+++|+|||||||++|.|+.||+++++++++|++++++.++
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~~~~~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~   98 (565)
T 4gx0_A           20 LLLYCAFLLVMLLAYASIFRYLMWHLEG-RAYSFMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILP   98 (565)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCchhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455555666677777665443333 338999999999999999999999999999999999999999999999998


Q ss_pred             H-HHHHHHHH
Q 047952          148 K-AADYLVDK  156 (354)
Q Consensus       148 ~-~~~~~~~~  156 (354)
                      . +.+.+...
T Consensus        99 ~~~~~~~~~~  108 (565)
T 4gx0_A           99 FGFVSMFLAP  108 (565)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7 66665544

>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*

Probab=99.27  E-value=9.4e-12  Score=124.80  Aligned_cols=75  Identities=23%  Similarity=0.373  Sum_probs=64.2

Q ss_pred             HHHHHHHhhhcccCCCcCCchhhhhhhhhhhcccccCccccCCccchhHHHHHHHHhHHHHHHhHHHHHHHHHHH
Q 047952           82 GSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYLVDK  156 (354)
Q Consensus        82 g~~~~~~~e~~~~~~~~~~~~~a~yf~~~t~tTvGyGdi~P~t~~~r~~~~~~~l~Gi~~~~~~~~~~~~~~~~~  156 (354)
                      .+.+.++.|...++..+.+|.+|+||+++|+||+||||++|.++.||+++++++++|+.++++.++.+.+.+...
T Consensus       357 f~~~~~~~e~~~~~~~F~s~~~a~y~~~vT~TTvGYGDi~P~t~~gr~f~~~~~l~G~~~l~l~iavI~~~f~~~  431 (514)
T 2r9r_B          357 FSSAVYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYF  431 (514)
T ss_dssp             HHHHHHHHHTTCTTCSCSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             HHhhhheeeccCCCccccchhhhhheeeeEEEecccCCCCCCCcchHhhehhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334445566655566778999999999999999999999999999999999999999999999999998877544

>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}

Probab=99.27  E-value=3.9e-12  Score=119.85  Aligned_cols=57  Identities=21%  Similarity=0.173  Sum_probs=54.4

Q ss_pred             CCccccceeeeeeecccccCCcccCCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047952          213 MSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWISSSTMTLAQFFLYVAEFNTE  269 (354)
Q Consensus       213 ~~~~da~yf~~vT~tTVGyGD~~p~t~~gr~~~~~~i~~g~~~~~~~~~~i~~~~~~  269 (354)
                      ++|.||+||+++|+|||||||++|.+..||+++++++++|+++++++++.+++.+.+
T Consensus        77 ~s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~  133 (321)
T 2qks_A           77 AGFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQ  133 (321)
T ss_dssp             TTHHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             cchhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            499999999999999999999999999999999999999999999999999987774

>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*

Probab=99.25  E-value=2.8e-12  Score=121.21  Aligned_cols=75  Identities=21%  Similarity=0.159  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHHHHHHh-------cCCccccceeeeeeecccccCCcccCCcCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047952          196 ELVLILVGTIFLVVVE-------KMSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWISSSTMTLAQFFLYVAEFNT  268 (354)
Q Consensus       196 ~~~~~~~~~~~~~~~e-------~~~~~da~yf~~vT~tTVGyGD~~p~t~~gr~~~~~~i~~g~~~~~~~~~~i~~~~~  268 (354)
                      +++.+++++++|+...       .++|.||+||+++|+|||||||++|.++.||+++++++++|+++++++++.+.+.+.
T Consensus        71 ~l~~~l~fally~~e~~~~~~~~~~s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~  150 (333)
T 1p7b_A           71 FVVNNTLFALLYQLGDAPIANQSPPGFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFA  150 (333)
T ss_dssp             HHHHHHHHHTTTSSSSSCCCCSSSSSTHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhcccccCCCCCcHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555565544321       258999999999999999999999999999999999999999999999999998877


Q ss_pred             HH
Q 047952          269 EK  270 (354)
Q Consensus       269 ~~  270 (354)
                      +.
T Consensus       151 ~~  152 (333)
T 1p7b_A          151 RP  152 (333)
T ss_dssp             SC
T ss_pred             HH
Confidence            53

>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*

Probab=99.12  E-value=1e-10  Score=110.45  Aligned_cols=60  Identities=20%  Similarity=0.188  Sum_probs=54.0

Q ss_pred             cCCchhhhhhhhhhhcccccCccccC--CccchhHHHHHHHHhHHHHHHhHHHHHHHHHHHH
Q 047952           98 TNEILDSIYFCIVTMTTVGYGDLVPN--SVVSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQ  157 (354)
Q Consensus        98 ~~~~~~a~yf~~~t~tTvGyGdi~P~--t~~~r~~~~~~~l~Gi~~~~~~~~~~~~~~~~~~  157 (354)
                      ..+|.+|+||+++|+|||||||++|.  ++.|++++.+.+++|+.++++.++.+...+.+..
T Consensus        89 ~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~srp~  150 (340)
T 3sya_A           89 LNGFVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQPK  150 (340)
T ss_dssp             CCSTTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGG
T ss_pred             ccCHHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence            46899999999999999999999997  6889999999999999999999998887775433

>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*

Probab=99.01  E-value=1.1e-09  Score=103.46  Aligned_cols=58  Identities=17%  Similarity=0.268  Sum_probs=52.4

Q ss_pred             cCCchhhhhhhhhhhcccccCccccC--CccchhHHHHHHHHhHHHHHHhHHHHHHHHHH
Q 047952           98 TNEILDSIYFCIVTMTTVGYGDLVPN--SVVSKLLSCAFVFTGMGLVGMFLSKAADYLVD  155 (354)
Q Consensus        98 ~~~~~~a~yf~~~t~tTvGyGdi~P~--t~~~r~~~~~~~l~Gi~~~~~~~~~~~~~~~~  155 (354)
                      ..+|.+|+||+++|+|||||||++|.  ++.|++++.+.++.|+.++++.++.+...+.+
T Consensus        92 ~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~sr  151 (343)
T 3spc_A           92 VNGFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMAR  151 (343)
T ss_dssp             CCSHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             cCCHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            46899999999999999999999974  89999999999999999999999887776643

>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*

Probab=98.97  E-value=3.8e-10  Score=106.55  Aligned_cols=58  Identities=21%  Similarity=0.202  Sum_probs=53.0

Q ss_pred             CCccccceeeeeeecccccCCcccC--CcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047952          213 MSFVDAFYCVCSTITTLGYGDKSFS--TTGGRAFGVVWISSSTMTLAQFFLYVAEFNTEK  270 (354)
Q Consensus       213 ~~~~da~yf~~vT~tTVGyGD~~p~--t~~gr~~~~~~i~~g~~~~~~~~~~i~~~~~~~  270 (354)
                      .+|.+++||+++|+|||||||+.|.  ++.|++++.+.+++|+.+++..++.+...+...
T Consensus        90 ~sf~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~srp  149 (340)
T 3sya_A           90 NGFVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQP  149 (340)
T ss_dssp             CSTTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCG
T ss_pred             cCHHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            3789999999999999999999997  678999999999999999999999998877754

>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*

Probab=98.88  E-value=1.9e-09  Score=101.92  Aligned_cols=57  Identities=21%  Similarity=0.141  Sum_probs=51.8

Q ss_pred             CCccccceeeeeeecccccCCcccC--CcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047952          213 MSFVDAFYCVCSTITTLGYGDKSFS--TTGGRAFGVVWISSSTMTLAQFFLYVAEFNTE  269 (354)
Q Consensus       213 ~~~~da~yf~~vT~tTVGyGD~~p~--t~~gr~~~~~~i~~g~~~~~~~~~~i~~~~~~  269 (354)
                      .+|.+++||+++|+|||||||+.|.  ++.|++++.+.+++|+.+++..++.+...+..
T Consensus        93 ~sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~sr  151 (343)
T 3spc_A           93 NGFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMAR  151 (343)
T ss_dssp             CSHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             CCHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4789999999999999999999974  78999999999999999999999988877664

>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*

Probab=98.78  E-value=2.1e-09  Score=99.66  Aligned_cols=60  Identities=8%  Similarity=-0.024  Sum_probs=49.8

Q ss_pred             CCccccceeeeeeecccccC-Ccc-cCCcCc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047952          213 MSFVDAFYCVCSTITTLGYG-DKS-FSTTGG----RAFGVVWISSSTMTLAQFFLYVAEFNTEKRQ  272 (354)
Q Consensus       213 ~~~~da~yf~~vT~tTVGyG-D~~-p~t~~g----r~~~~~~i~~g~~~~~~~~~~i~~~~~~~~~  272 (354)
                      -++.+|+||.++|+||+||| |+. |.+..|    +.|+.+.++.|+++++++++.+.+.+.+..+
T Consensus       179 ~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~~~  244 (285)
T 3rvy_A          179 GTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAILNQ  244 (285)
T ss_dssp             SSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred             CCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57888999999999999999 996 887755    7888888999999999999999999887544

>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*

Probab=98.57  E-value=6e-08  Score=89.75  Aligned_cols=81  Identities=10%  Similarity=0.036  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHHHhhhcccCCCcCCchhhhhhhhhhhcccccC-ccc-cCCccc----hhHHHHHHHHhHHHHHHhHHHHH
Q 047952           77 AYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYG-DLV-PNSVVS----KLLSCAFVFTGMGLVGMFLSKAA  150 (354)
Q Consensus        77 ~~l~~g~~~~~~~e~~~~~~~~~~~~~a~yf~~~t~tTvGyG-di~-P~t~~~----r~~~~~~~l~Gi~~~~~~~~~~~  150 (354)
                      ++++.+.+.+.+.+ +..+.++.++.+|+||+++++||+||| |+. |.+..|    ++++++.++.|+.++.+.++.+.
T Consensus       158 ~~~~fa~~g~~~f~-~~~~~~F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~  236 (285)
T 3rvy_A          158 FFYIFAIMATQLFG-ERFPEWFGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICV  236 (285)
T ss_dssp             HHHHHHHHHHHHHT-TTCHHHHSSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC-cccccccCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444443 333345789999999999999999999 986 887765    78888888999999999999999


Q ss_pred             HHHHHHHH
Q 047952          151 DYLVDKQE  158 (354)
Q Consensus       151 ~~~~~~~~  158 (354)
                      +.+.+..+
T Consensus       237 ~~f~~~~~  244 (285)
T 3rvy_A          237 DAMAILNQ  244 (285)
T ss_dssp             HHC-----
T ss_pred             HHHHHHHH
Confidence            88865443

>3pjz_A Potassium uptake protein TRKH; structural genomics, PSI-2, protein structure initiative, NE consortium on membrane protein structure; 3.51A {Vibrio parahaemolyticus}

Probab=97.27  E-value=0.00055  Score=67.81  Aligned_cols=151  Identities=15%  Similarity=0.116  Sum_probs=80.8

Q ss_pred             CchhhhhhhhhhhcccccC--ccccCCccchhHHHHHHHHhHHHHHH--hHHHHHHHH-HHHHHHHHHHHHhhccccCCc
Q 047952          100 EILDSIYFCIVTMTTVGYG--DLVPNSVVSKLLSCAFVFTGMGLVGM--FLSKAADYL-VDKQEILLVKALHRYQKVGPT  174 (354)
Q Consensus       100 ~~~~a~yf~~~t~tTvGyG--di~P~t~~~r~~~~~~~l~Gi~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  174 (354)
                      .+.+|++-+++..||.||.  |+.--++..+++.++.|++|=+--+.  -+....-.+ .+.-.+.+.+..+. +...+.
T Consensus       306 ~l~~a~Fq~vS~~TttGF~t~d~~~w~~~~~~ll~~LMfIGG~~GSTaGGIKv~r~~il~~~~~~el~~~~~P-~~v~~v  384 (494)
T 3pjz_A          306 AFDQALFQTVSISTTAGFTTTGFADWPLFLPVLLLFSSFIGGCAGSTGGGMKVIRILLLTLQGARELKRLVHP-RAVYTI  384 (494)
T ss_dssp             HHHHHHHHHHHTTTTCCCCSCCCSSCCTHHHHHHHHHTTSCSCTTSSCCSSCHHHHHHHHHHHHHHHHHHHCS-SSCCCC
T ss_pred             HHHHHHHheeecccCCcccccChHhCCHHHHHHHHHHHHHcCCcccCCCchhHHHHHHHHHHHHHHHhcccCC-Ccceee
Confidence            4567788888888999997  55555566677766666665322111  000111111 11111222222222 111222


Q ss_pred             cchh-hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCccccceeeeeeeccccc--CCccc----CCcCchHHHHH
Q 047952          175 DILK-EIETNKVRYKCIIMLVLELVLILVGTIFLVVVEKMSFVDAFYCVCSTITTLGY--GDKSF----STTGGRAFGVV  247 (354)
Q Consensus       175 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~da~yf~~vT~tTVGy--GD~~p----~t~~gr~~~~~  247 (354)
                      ++.+ .+++ +...+....+++.++.+++++++... .+.++.+++.=++.+++|||-  |.+-|    -++.+|++.++
T Consensus       385 ~~~~r~i~~-~~v~~~~~~~~ly~~~~~~~~~~l~~-~g~~~~~a~~~v~Sal~nvG~s~G~vg~~~~~L~~~~K~vl~~  462 (494)
T 3pjz_A          385 KVGGSALPQ-RVVDAVWGFFSAYALVFVVCMLGLIA-TGMDELSAFSAVAATLNNLGPGLGEVALHFGDVNDKAKWVLIV  462 (494)
T ss_dssp             CSSSCCCTT-THHHHHHHHHHHHHHHHHHHHHHHHH-HSSCHHHHHHHHHHHTTTCCSCCSSSCCCCSSSCHHHHHHHHH
T ss_pred             eECCEECCH-HHHHHHHHHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHcCCCCcccccCCCcccCCHHHHHHHHH
Confidence            2221 2222 22333343344444555556655544 458899999999999999985  43333    34568998888


Q ss_pred             HHHHHH
Q 047952          248 WISSST  253 (354)
Q Consensus       248 ~i~~g~  253 (354)
                      .|++|=
T Consensus       463 ~M~~GR  468 (494)
T 3pjz_A          463 SMLFGR  468 (494)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            888773

>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}

Probab=96.58  E-value=0.0053  Score=54.28  Aligned_cols=74  Identities=7%  Similarity=0.053  Sum_probs=48.4

Q ss_pred             HHHHHHHHHhhhcccCCCcCCchhhhhhhhhhhcccccCcccc----CCccchhHHHHHHH-HhHHHHHHhHHHHHHHHH
Q 047952           80 GGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVP----NSVVSKLLSCAFVF-TGMGLVGMFLSKAADYLV  154 (354)
Q Consensus        80 ~~g~~~~~~~e~~~~~~~~~~~~~a~yf~~~t~tTvGyGdi~P----~t~~~r~~~~~~~l-~Gi~~~~~~~~~~~~~~~  154 (354)
                      +.+...++..+ +.++.++.++.+|+|+.+.++|+.||+|+..    .++.+.++.+.|.+ .+..++.+.++.+.+.+.
T Consensus       146 ifa~~g~~lf~-~~~~~~F~~~~~a~~~lf~~~t~~~w~~i~~~~~~~~~~~~~~f~~~~~i~~~i~lNlfiavi~~~f~  224 (229)
T 4dxw_A          146 IYATMGAILFG-NDDPSRWGDLGISLITLFQVLTLSSWETVMLPMQEIYWWSWVYFFSFIIICSITILNLVIAILVDVVI  224 (229)
T ss_dssp             HHHHHHHHHTT-TTSCTTTSSHHHHHHHHHHHHTTSSTHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhc-cCCcccccCHHHHHHHHHHHHccCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444 3455678899999999999999999999732    23344444444444 456677777777766554

>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}

Probab=96.42  E-value=0.00053  Score=60.90  Aligned_cols=70  Identities=7%  Similarity=0.025  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHhc------CCccccceeeeeeecccccCCcccC----CcCchHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 047952          200 ILVGTIFLVVVEK------MSFVDAFYCVCSTITTLGYGDKSFS----TTGGRAFGVVW-ISSSTMTLAQFFLYVAEFNT  268 (354)
Q Consensus       200 ~~~~~~~~~~~e~------~~~~da~yf~~vT~tTVGyGD~~p~----t~~gr~~~~~~-i~~g~~~~~~~~~~i~~~~~  268 (354)
                      ...+.+++...++      -++.+|+|+.+.++||.|++|+...    ++.+.++-+.+ ++.+..++.++++.+.+.+.
T Consensus       145 ~ifa~~g~~lf~~~~~~~F~~~~~a~~~lf~~~t~~~w~~i~~~~~~~~~~~~~~f~~~~~i~~~i~lNlfiavi~~~f~  224 (229)
T 4dxw_A          145 YIYATMGAILFGNDDPSRWGDLGISLITLFQVLTLSSWETVMLPMQEIYWWSWVYFFSFIIICSITILNLVIAILVDVVI  224 (229)
T ss_dssp             HHHHHHHHHHTTTTSCTTTSSHHHHHHHHHHHHTTSSTHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCCcccccCHHHHHHHHHHHHccCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444443      4678899999999999999997432    23344444444 45557777888888887766


Q ss_pred             H
Q 047952          269 E  269 (354)
Q Consensus       269 ~  269 (354)
                      +
T Consensus       225 ~  225 (229)
T 4dxw_A          225 Q  225 (229)
T ss_dssp             T
T ss_pred             H
Confidence            4

>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}

Probab=95.42  E-value=0.0081  Score=62.75  Aligned_cols=55  Identities=20%  Similarity=0.341  Sum_probs=46.0

Q ss_pred             ccccceeeeeeecccccCCcccCCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047952          215 FVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWISSSTMTLAQFFLYVAEFNTEK  270 (354)
Q Consensus       215 ~~da~yf~~vT~tTVGyGD~~p~t~~gr~~~~~~i~~g~~~~~~~~~~i~~~~~~~  270 (354)
                      +.+++||++.+++..| ++..|.+..+|++.++|+++++++.+...+.+++.++..
T Consensus       564 ~~~~~~~~~~~l~~~g-~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~  618 (823)
T 3kg2_A          564 IFNSLWFSLGAFMQQG-ADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVE  618 (823)
T ss_dssp             HHHHHHHTTTTSCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcC-CCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            6689999999999999 788999999999999999999999999999999999864

>3pjz_A Potassium uptake protein TRKH; structural genomics, PSI-2, protein structure initiative, NE consortium on membrane protein structure; 3.51A {Vibrio parahaemolyticus}

Probab=95.06  E-value=0.036  Score=54.83  Aligned_cols=40  Identities=18%  Similarity=0.223  Sum_probs=26.2

Q ss_pred             CCchhhhhhhhhhhcccccCcc----ccC-CccchhHHHHHHHHh
Q 047952           99 NEILDSIYFCIVTMTTVGYGDL----VPN-SVVSKLLSCAFVFTG  138 (354)
Q Consensus        99 ~~~~~a~yf~~~t~tTvGyGdi----~P~-t~~~r~~~~~~~l~G  138 (354)
                      .+++||+..++.+++|-||.-.    .+- ++.-.+++++++++|
T Consensus       205 m~~fdAi~Ha~Sa~~tgGFs~~~~Si~~~~s~~i~~vi~~~milg  249 (494)
T 3pjz_A          205 MTPFDAISHSFSTIAIGGFSTHDASMGYFDSYAINLITVVFLLIS  249 (494)
T ss_dssp             CCSHHHHTTTHHHHTTCCCCSSTTGGGSSCCTTHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHhCCCCCCccchhhhhcCHHHHHHHHHHHHHH
Confidence            5789999999999999998532    111 333344555555544

>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}

Probab=94.43  E-value=0.054  Score=56.45  Aligned_cols=56  Identities=18%  Similarity=0.452  Sum_probs=46.0

Q ss_pred             CchhhhhhhhhhhcccccCccccCCccchhHHHHHHHHhHHHHHHhHHHHHHHHHHH
Q 047952          100 EILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYLVDK  156 (354)
Q Consensus       100 ~~~~a~yf~~~t~tTvGyGdi~P~t~~~r~~~~~~~l~Gi~~~~~~~~~~~~~~~~~  156 (354)
                      ++.+++||++.+++..| ++..|.+..+|++.++|+++++.+.+...+.+.+++...
T Consensus       563 ~~~~~~~~~~~~l~~~g-~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~  618 (823)
T 3kg2_A          563 GIFNSLWFSLGAFMQQG-ADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVE  618 (823)
T ss_dssp             HHHHHHHHTTTTSCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhcC-CCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            47789999999999988 788999999999999999999999999999999988643

>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase structural genomics malaria, structural genom consortium, SGC, ATP-binding; 1.15A {Plasmodium falciparum} PDB: 3o4y_A

Probab=92.71  E-value=0.17  Score=42.68  Aligned_cols=56  Identities=25%  Similarity=0.432  Sum_probs=43.7

Q ss_pred             hhhcccCCCccchHHHHHHHHH--HcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          290 EAADIDEDGVVSAAEFIIYKLK--EMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       290 ~~~~l~~~g~v~~~e~v~~~l~--~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      ...|.+++|.++..|+....-.  ....+++++.+.+.+-|...|.|+||.|+.+|+.
T Consensus       129 ~~~D~d~~G~Is~~El~~~l~~~~~~~~l~~~~~~~~~~~~~~~D~d~dG~Is~~EF~  186 (191)
T 3k21_A          129 RVFDVDNDGEITTAELAHILYNGNKKGNITQRDVNRVKRMIRDVDKNNDGKIDFHEFS  186 (191)
T ss_dssp             HHHSTTCSSCBCHHHHHHHHHHSSSCSCCCHHHHHHHHHHHHHHCSSSSSSBCHHHHH
T ss_pred             HHhCCCCCCcCCHHHHHHHHHhcCCCCCCCHhHHHHHHHHHHHhcCCCCCeECHHHHH
Confidence            4457789999998887665432  2235778888888888999999999999999865

>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}

Probab=92.54  E-value=0.12  Score=39.25  Aligned_cols=51  Identities=22%  Similarity=0.445  Sum_probs=37.6

Q ss_pred             hhcccCCCccchHHHHHHHHHHcC-CCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          291 AADIDEDGVVSAAEFIIYKLKEMG-KISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       291 ~~~l~~~g~v~~~e~v~~~l~~~~-~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      .-|.+++|.++..|+.. .|...| .+++++++++   +.+.|.|+||.|+-+|..
T Consensus        44 ~~D~d~~G~I~~~El~~-~l~~lg~~~~~~ei~~l---~~~~D~d~dG~I~~~EF~   95 (100)
T 2lv7_A           44 VFDRDGNGFISKQELGT-AMRSLGYMPNEVELEVI---IQRLDMDGDGQVDFEEFV   95 (100)
T ss_dssp             HTCSSCSSCBCHHHHHH-HHHHHTCCCCTTTHHHH---HHHHCSSCSSSBCHHHHH
T ss_pred             HHcCCCCCcCCHHHHHH-HHHHhCCCCCHHHHHHH---HHHHCCCCCCeEeHHHHH
Confidence            44678999999877544 455555 5677777665   556789999999998864

>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo pealeii}

Probab=92.43  E-value=0.22  Score=41.46  Aligned_cols=56  Identities=14%  Similarity=0.041  Sum_probs=38.4

Q ss_pred             hhcccCCCccchHHHHHHHHHH------cCCCCHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952          291 AADIDEDGVVSAAEFIIYKLKE------MGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       291 ~~~l~~~g~v~~~e~v~~~l~~------~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      ..|.+++|.++..||+......      ........-+.+...|...|.|+||.|+.+|+.-
T Consensus        72 ~~D~d~dG~i~~~Ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~dG~I~~~E~~~  133 (191)
T 2ccm_A           72 YADENEDEQVTKEEWLKMWAECVKSVEKGESLPEWLTKYMNFMFDVNDTSGDNIIDKHEYST  133 (191)
T ss_dssp             HHCTTCSSCEEHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHCTTCSSBCCHHHHHH
T ss_pred             hcCCCCCCeECHHHHHHHHHHHhccccchhhchHHHHHHHHHHHHHhCCCCCCcCcHHHHHH
Confidence            4567889999999987764432      1222333345566778888888888888888653

>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: a.39.1.5

Probab=92.30  E-value=0.3  Score=32.95  Aligned_cols=51  Identities=29%  Similarity=0.434  Sum_probs=37.5

Q ss_pred             hhcccCCCccchHHHHHHHHHHcC-CCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          291 AADIDEDGVVSAAEFIIYKLKEMG-KISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       291 ~~~l~~~g~v~~~e~v~~~l~~~~-~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      ..|.+++|.++..|+... +...+ ..++++++.   -|...|.|++|.++.+++.
T Consensus         9 ~~D~d~~G~i~~~el~~~-l~~~~~~~~~~~~~~---~~~~~D~~~dg~i~~~ef~   60 (67)
T 1tiz_A            9 KFDKNKDGKLSLDEFREV-ALAFSPYFTQEDIVK---FFEEIDVDGNGELNADEFT   60 (67)
T ss_dssp             HHCTTSSSCEEHHHHHHH-HHHTCTTSCHHHHHH---HHHHHCCSSSSEECHHHHH
T ss_pred             HHCCCCCCcCcHHHHHHH-HHHhCCCCCHHHHHH---HHHHHCCCCCCcCcHHHHH
Confidence            456789999998886654 45555 466666655   5667799999999999865

>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand, helix-loop- helix, nervous system, metal binding protein; NMR {Haemopis marmorata} PDB: 1yx8_A

Probab=92.21  E-value=0.16  Score=36.26  Aligned_cols=54  Identities=19%  Similarity=0.358  Sum_probs=39.7

Q ss_pred             hhcccCCCccchHHHHHHHHHHcC---CCCHHHHHHHHH-HhhhcCCCCCCccChhhhh
Q 047952          291 AADIDEDGVVSAAEFIIYKLKEMG---KISQEDIALVME-EFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       291 ~~~l~~~g~v~~~e~v~~~l~~~~---~~~~~~l~~i~~-~f~~ld~~~~g~l~~~d~~  345 (354)
                      ..|.+++|.++..|+... +...+   ..++++++.+.+ -|...|.|++|.|+.++..
T Consensus        15 ~~D~d~~G~i~~~el~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~D~~~dg~I~~~eF~   72 (83)
T 1yx7_A           15 KLDANGDGYVTALELQTF-MVTLDAYKALSKDKVKEASAKLIKMADKNSDGKISKEEFL   72 (83)
T ss_dssp             HHSSSCSSSCSHHHHHHH-HHHHTTCTTTTTTTTHHHHHHHHTTTCSSSCSCCSHHHHH
T ss_pred             HHCCCCCCcCcHHHHHHH-HHHHccccCCCHHHHHHHHHHHHHHhCCCCCCCCcHHHHH
Confidence            446789999998886554 44444   466666666332 4888899999999999976

>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A

Probab=92.20  E-value=0.26  Score=38.97  Aligned_cols=55  Identities=16%  Similarity=0.294  Sum_probs=41.8

Q ss_pred             hcccCCCccchHHHHHHHHHHcCCCCHH--HHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952          292 ADIDEDGVVSAAEFIIYKLKEMGKISQE--DIALVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       292 ~~l~~~g~v~~~e~v~~~l~~~~~~~~~--~l~~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      .|.+++|.++..||+............+  ..+.+...|..+|.|++|.|+.+|+.-
T Consensus        56 ~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~i~~~el~~  112 (153)
T 3ox6_A           56 INMNLGGHVDFDDFVELMGPKLLAETADMIGVKELRDAFREFDTNGDGEISTSELRE  112 (153)
T ss_dssp             HHTTSTTCCCHHHHHHHHHHHHTTCCHHHHCHHHHHHHHHHHCTTCSSSBCHHHHHH
T ss_pred             hCCCCCccCcHHHHHHHHHHHhhccccccccHHHHHHHHHHhCCCCCCcCcHHHHHH
Confidence            4567889999999988765554444332  246677889999999999999999763

>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein, regulation, complex, calcium, EF- hand, calmodulin, ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis thaliana}

Probab=91.75  E-value=0.083  Score=42.20  Aligned_cols=51  Identities=10%  Similarity=0.028  Sum_probs=17.1

Q ss_pred             cccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          293 DIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       293 ~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      |.+++|.++..||+.......  ......+.+.+.|...|.|++|.|+.+|+.
T Consensus        13 D~d~~G~I~~~EF~~~~~~~~--~~~~~~~~l~~~F~~~D~d~~G~I~~~el~   63 (135)
T 3h4s_E           13 TSTTKMETKYEDMLPVMAEKM--DVEEFVSELCKGFSLLADPERHLITAESLR   63 (135)
T ss_dssp             ------CCCC-------------CHHHHHHHHHHHHHHHSBTTTTBBCHHHHH
T ss_pred             cCCCCCcEeHHHHHHHHHHHc--cccchHHHHHHHHHHHCCCCCCcCCHHHHH
Confidence            444555555555544332211  112233444555555555555555555543

>3li6_A Calcium-binding protein; calcium signaling protein, assemble free energy, dynamic behaviour, cytoskeleton, metal binding; 2.50A {Entamoeba histolytica}

Probab=91.64  E-value=0.18  Score=34.18  Aligned_cols=53  Identities=21%  Similarity=0.379  Sum_probs=36.5

Q ss_pred             hhhcccCCCccchHHHHHHHHHHcC-CCCHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952          290 EAADIDEDGVVSAAEFIIYKLKEMG-KISQEDIALVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       290 ~~~~l~~~g~v~~~e~v~~~l~~~~-~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      ...|.+++|.++..|+... +...+ ..+.+   .+.+-|...|.|++|.|+.+|+.-
T Consensus         7 ~~~D~d~~G~i~~~e~~~~-l~~~~~~~~~~---~~~~~~~~~D~~~~g~i~~~ef~~   60 (66)
T 3li6_A            7 KEIDVNGDGAVSYEEVKAF-VSKKRAIKNEQ---LLQLIFKSIDADGNGEIDQNEFAK   60 (66)
T ss_dssp             HHHCTTCSSSCCHHHHHHH-HHHHHHHHHHH---HHHHHHHHHCTTCSSSCCHHHHHH
T ss_pred             HHHCCCCCCcccHHHHHHH-HHHccCCCcHH---HHHHHHHHHCCCCCCCCCHHHHHH
Confidence            3456789999998886544 33333 22333   445568888999999999998753

>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4 PDB: 2pas_A 3pat_A

Probab=91.57  E-value=0.14  Score=38.76  Aligned_cols=48  Identities=19%  Similarity=0.311  Sum_probs=37.3

Q ss_pred             cCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhhhc
Q 047952          295 DEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFLA  347 (354)
Q Consensus       295 ~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~~  347 (354)
                      +++|.++-.||+...  .   ...+..+.+.+.|...|.|++|.|+.+|+.-.
T Consensus        20 d~~g~i~~~ef~~~~--~---~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~   67 (110)
T 1pva_A           20 KAEGSFNHKKFFALV--G---LKAMSANDVKKVFKAIDADASGFIEEEELKFV   67 (110)
T ss_dssp             CSTTCCCHHHHHHHH--T---CTTSCHHHHHHHHHHHCTTCSSSBCHHHHHTG
T ss_pred             CCCCcCcHHHHHHHH--c---cCcchHHHHHHHHHHhCCCCCCcCcHHHHHHH
Confidence            478899998988764  2   23345567788899999999999999998643

>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6

Probab=91.54  E-value=0.12  Score=38.40  Aligned_cols=30  Identities=20%  Similarity=0.304  Sum_probs=20.7

Q ss_pred             CCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          316 ISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       316 ~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      +++++.+++.+.|..+|.|+||.|+.+|+.
T Consensus         3 ls~~~~~~~~~~F~~~D~d~dG~I~~~el~   32 (92)
T 1fi6_A            3 ITDEQRQYYVNQFKTIQPDLNGFIPGSAAK   32 (92)
T ss_dssp             CCHHHHHHHHHHHTTTCCSTTCEEEHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCcCcHHHHH
Confidence            356666777777777777777777777654

>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB: 3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A

Probab=91.46  E-value=0.19  Score=39.99  Aligned_cols=21  Identities=29%  Similarity=0.570  Sum_probs=9.7

Q ss_pred             HHHHhhhcCCCCCCccChhhh
Q 047952          324 VMEEFQDLDFDQSGTLSPSDL  344 (354)
Q Consensus       324 i~~~f~~ld~~~~g~l~~~d~  344 (354)
                      +.+.|...|.|++|.|+.+++
T Consensus        81 l~~~F~~~D~d~~G~I~~~el  101 (143)
T 2obh_A           81 ILKAFKLFDDDETGKISFKNL  101 (143)
T ss_dssp             HHHHHHHHCTTCSSSBCHHHH
T ss_pred             HHHHHHHhCCCCCCcCcHHHH
Confidence            334444444444444444443

>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens} SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B* 1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C

Probab=91.46  E-value=0.076  Score=42.45  Aligned_cols=50  Identities=16%  Similarity=0.146  Sum_probs=22.6

Q ss_pred             CCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          296 EDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       296 ~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      ++|.++..||+...........+...+.+.+.|...|.|++|.|+.+|+.
T Consensus        61 ~~g~i~~~eF~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~  110 (151)
T 1w7j_B           61 KSRRVDFETFLPMLQAVAKNRGQGTYEDYLEGFRVFDKEGNGKVMGAELR  110 (151)
T ss_dssp             TTCEEEHHHHHHHHHHHCC--------CCHHHHHTTCTTSSSEEEHHHHH
T ss_pred             CCCcCcHHHHHHHHHHHhccCCCCcHHHHHHHHHHhCCCCCCcCcHHHHH
Confidence            55556655555544333322222333344455666666666666665543

>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma lanceolatum} SCOP: a.39.1.5

Probab=91.38  E-value=0.21  Score=41.02  Aligned_cols=57  Identities=21%  Similarity=0.237  Sum_probs=40.3

Q ss_pred             hhhcccCCCccchHHHHHHHHHHcCC------CCHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952          290 EAADIDEDGVVSAAEFIIYKLKEMGK------ISQEDIALVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       290 ~~~~l~~~g~v~~~e~v~~~l~~~~~------~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      ...|.+++|.++..||+...-.....      ......+.+.+.|...|.|++|.|+.+|+.-
T Consensus        67 ~~~D~d~dG~I~~~Ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~dG~Is~~E~~~  129 (185)
T 2sas_A           67 GRADINKDDVVSWEEYLAMWEKTIATCKSVADLPAWCQNRIPFLFKGMDVSGDGIVDLEEFQN  129 (185)
T ss_dssp             HHHCTTCSSCEEHHHHHHHHHHHHHTCCSGGGSCTTHHHHHHHHHHHHCTTSSSCCCHHHHHH
T ss_pred             HhcCCCCCCeEcHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHcCCCCCeEcHHHHHH
Confidence            45577899999999987765443221      1122335567789999999999999999764

>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C

Probab=91.35  E-value=0.14  Score=42.17  Aligned_cols=52  Identities=15%  Similarity=0.147  Sum_probs=34.0

Q ss_pred             ccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          294 IDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       294 l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      -+++|.++-.||+........+......+.+.+.|...|.|++|.|+.+++.
T Consensus        57 ~~~~g~i~f~eFl~~~~~~~~~~~~~~~~~l~~aF~~fD~d~~G~I~~~el~  108 (159)
T 3i5g_C           57 KMGEKAYKLEEILPIYEEMSSKDTGTAADEFMEAFKTFDREGQGLISSAEIR  108 (159)
T ss_dssp             STTSCEECHHHHHHHHHHHTTCCTTCCHHHHHHHHHHHCTTSSSEECHHHHH
T ss_pred             ccCCCcccHHHHHHHHHHhhcccccchHHHHHHHHHHHhcCCCCcCcHHHHH
Confidence            3467778888887655444443333333445667888888888888888864

>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}

Probab=91.35  E-value=0.096  Score=39.89  Aligned_cols=33  Identities=24%  Similarity=0.371  Sum_probs=29.3

Q ss_pred             CCCCHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952          314 GKISQEDIALVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       314 ~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      ..+++++++++.+.|+.+|.|+||.|+.+|+.-
T Consensus        28 ~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~   60 (100)
T 2lv7_A           28 VDIPEDELEEIREAFKVFDRDGNGFISKQELGT   60 (100)
T ss_dssp             CCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHH
Confidence            356788899999999999999999999999864

>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP: a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A 1rk9_A 1g33_A

Probab=91.34  E-value=0.11  Score=39.20  Aligned_cols=48  Identities=19%  Similarity=0.193  Sum_probs=36.7

Q ss_pred             ccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952          294 IDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       294 l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      ++++|.++-.||+...-  .   ..+..+.+.+.|...|.|++|.|+.+|+.-
T Consensus        18 ~d~~g~i~~~eF~~~~~--~---~~~~~~~l~~~F~~~D~d~~G~I~~~el~~   65 (109)
T 1rwy_A           18 FTAADSFDHKKFFQMVG--L---KKKSADDVKKVFHILDKDKSGFIEEDELGS   65 (109)
T ss_dssp             TCSTTCCCHHHHHHHHT--G---GGSCHHHHHHHHHHHSTTCSSEECHHHHHT
T ss_pred             cCCCCcEeHHHHHHHHh--c---CcchHHHHHHHHHHHCCCCCCeEcHHHHHH
Confidence            34788999999987642  1   133456677889999999999999999764

>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein targeting, AKA beta-augmentation, calmodulin-binding, membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B* 2p6b_B 1aui_B 1m63_B* 1tco_B*

Probab=91.34  E-value=0.37  Score=38.30  Aligned_cols=57  Identities=18%  Similarity=0.296  Sum_probs=43.8

Q ss_pred             hhhcccCCCccchHHHHHHHHH-HcCCCCHHHHHHHHHH-hhhcCCCCCCccChhhhhh
Q 047952          290 EAADIDEDGVVSAAEFIIYKLK-EMGKISQEDIALVMEE-FQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       290 ~~~~l~~~g~v~~~e~v~~~l~-~~~~~~~~~l~~i~~~-f~~ld~~~~g~l~~~d~~~  346 (354)
                      ...|.+++|.++..|+....-. ....++.++++.+.+. |...|.|++|.|+.+++.-
T Consensus        82 ~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~  140 (155)
T 3ll8_B           82 RIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIINADKDGDGRISFEEFCA  140 (155)
T ss_dssp             HHHCTTCSSCBCHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHCTTSSSSBCHHHHHH
T ss_pred             HHhCCCCCCcCcHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhCCCCCCcCcHHHHHH
Confidence            3456789999999887665444 2457888888887765 7779999999999998653

>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR {Schizosaccharomyces pombe} SCOP: a.39.1.5

Probab=91.34  E-value=0.089  Score=41.49  Aligned_cols=51  Identities=20%  Similarity=0.183  Sum_probs=30.1

Q ss_pred             cCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          295 DEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       295 ~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      +++|.++..||+...-.......++..+.+.+.|..+|.|++|.|+.+|+.
T Consensus        49 ~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~i~~~el~   99 (140)
T 1ggw_A           49 TLPAEVDMEQFLQVLNRPNGFDMPGDPEEFVKGFQVFDKDATGMIGVGELR   99 (140)
T ss_dssp             TSCSSEEHHHHHHHHCTTSSSSSSCCHHHHHHHHHTTCSSCSSCCCHHHHH
T ss_pred             CCCCcCcHHHHHHHHHHHhcccCcccHHHHHHHHHHhCCCCCCcEeHHHHH
Confidence            566677777766554333322233333455566777777777777777764

>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A {Rattus norvegicus} PDB: 2e30_A

Probab=91.31  E-value=0.2  Score=42.69  Aligned_cols=55  Identities=13%  Similarity=0.057  Sum_probs=40.7

Q ss_pred             hcccCCCccchHHHHHHHHHHcCCCCH-------------HHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952          292 ADIDEDGVVSAAEFIIYKLKEMGKISQ-------------EDIALVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       292 ~~l~~~g~v~~~e~v~~~l~~~~~~~~-------------~~l~~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      .|.+++|.++-.||+............             ...+.+...|...|.|++|.|+.+|+.-
T Consensus        70 ~d~~~~g~i~~~EF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~dG~Is~~El~~  137 (208)
T 2ct9_A           70 FFSEGEDQVNFRGFMRTLAHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAFRLYDLDKDDKISRDELLQ  137 (208)
T ss_dssp             TSCTTCSCEEHHHHHHHHHTTSCCC-----------CCTTSHHHHHHHHHHHHCTTCSSEECHHHHHH
T ss_pred             HcCCCCCcCcHHHHHHHHHhhccccchhhhcccccccccccHHHHHHHHHHHHCCCCCCEEcHHHHHH
Confidence            356789999999998865443322111             1566778899999999999999999854

>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*

Probab=91.27  E-value=0.21  Score=39.38  Aligned_cols=50  Identities=16%  Similarity=0.260  Sum_probs=22.6

Q ss_pred             ccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhh
Q 047952          294 IDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDL  344 (354)
Q Consensus       294 l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~  344 (354)
                      .++ |.++..||+...............+.+...|..+|.|++|.|+.+++
T Consensus        58 ~~~-g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~i~~~el  107 (149)
T 2mys_C           58 MNA-AAITFEEFLPMLQAAANNKDQGTFEDFVEGLRVFDKEGNGTVMGAEL  107 (149)
T ss_pred             ccC-CcCcHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCCceEcHHHH
Confidence            344 55555555444333211222223333444455555555555555554

>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}

Probab=91.13  E-value=0.44  Score=35.29  Aligned_cols=51  Identities=25%  Similarity=0.517  Sum_probs=38.2

Q ss_pred             hhcccCCCccchHHHHHHHHHHcC-CCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          291 AADIDEDGVVSAAEFIIYKLKEMG-KISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       291 ~~~l~~~g~v~~~e~v~~~l~~~~-~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      ..|.+++|.++..|+... +...| ..+.++++.+   |...|.|++|.|+.+|..
T Consensus        37 ~~D~d~~G~I~~~El~~~-l~~~g~~~~~~e~~~l---~~~~D~d~dG~I~~~EF~   88 (94)
T 2kz2_A           37 VEDKDGNGYISAAELRHV-MTNLGEKLTDEEVDEM---IREADIDGDGQVNYEEFV   88 (94)
T ss_dssp             HHCTTCCSCBCHHHHHHH-HHHHTCCCCHHHHHHH---HHHHCTTCSSSBCHHHHH
T ss_pred             HHCCCCcCcCCHHHHHHH-HHHhCCCCCHHHHHHH---HHHhCCCCCCcEeHHHHH
Confidence            446789999998886554 45555 5777777665   556789999999999864

>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein targeting, AKA beta-augmentation, calmodulin-binding, membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B* 2p6b_B 1aui_B 1m63_B* 1tco_B*

Probab=91.01  E-value=0.29  Score=38.90  Aligned_cols=54  Identities=28%  Similarity=0.262  Sum_probs=40.0

Q ss_pred             hhcccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952          291 AADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       291 ~~~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      ..|.+++|.++..||+..........  ...+.+...|...|.|++|.|+.+|+.-
T Consensus        46 ~~D~~~~g~i~~~ef~~~~~~~~~~~--~~~~~~~~~F~~~D~d~~G~i~~~e~~~   99 (155)
T 3ll8_B           46 IFDTDGNGEVDFKEFIEGVSQFSVKG--DKEQKLRFAFRIYDMDKDGYISNGELFQ   99 (155)
T ss_dssp             HHCTTCSSSBCHHHHHHHHGGGCSSC--CHHHHHHHHHHHHCTTCSSCBCHHHHHH
T ss_pred             HHCCCCCCcCcHHHHHHHHHHHcccC--CHHHHHHHHHHHhCCCCCCcCcHHHHHH
Confidence            44667899999999988764433332  2335567789999999999999999753

>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A {Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A 1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ...

Probab=90.98  E-value=0.25  Score=39.40  Aligned_cols=22  Identities=32%  Similarity=0.564  Sum_probs=11.1

Q ss_pred             HHHHHhhhcCCCCCCccChhhh
Q 047952          323 LVMEEFQDLDFDQSGTLSPSDL  344 (354)
Q Consensus       323 ~i~~~f~~ld~~~~g~l~~~d~  344 (354)
                      .+.+.|...|.|++|.|+.+++
T Consensus        84 ~l~~~F~~~D~d~~G~I~~~el  105 (148)
T 1exr_A           84 ELIEAFKVFDRDGNGLISAAEL  105 (148)
T ss_dssp             HHHHHHHHHSTTCSSCBCHHHH
T ss_pred             HHHHHHHHhCCCCCCcCCHHHH
Confidence            3344455555555555555554

>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z 1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z 3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z 2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...

Probab=90.83  E-value=0.13  Score=41.30  Aligned_cols=52  Identities=23%  Similarity=0.201  Sum_probs=29.7

Q ss_pred             cccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          293 DIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       293 ~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      |.+++|.++..||+......... .....+.+.+.|..+|.|++|.|+.+++.
T Consensus        56 D~~~~g~i~~~eF~~~~~~~~~~-~~~~~~~l~~~F~~~D~d~~G~I~~~el~  107 (156)
T 1wdc_C           56 HKMGEKSLPFEEFLPAYEGLMDC-EQGTFADYMEAFKTFDREGQGFISGAELR  107 (156)
T ss_dssp             SSTTSCEECHHHHHHHHHHHTTS-CCCCHHHHHHHHHTTCSSSSSEEEHHHHH
T ss_pred             CCCCCCeeeHHHHHHHHHHHhhc-cCChHHHHHHHHHHhCCCCCCcCcHHHHH
Confidence            44566777777776655444331 11122334556777777777777777654

>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus} SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A

Probab=90.65  E-value=0.14  Score=38.72  Aligned_cols=47  Identities=21%  Similarity=0.296  Sum_probs=36.1

Q ss_pred             cCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952          295 DEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       295 ~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      +++|.++-.||+...  ...   +...+.+.+.|...|.|++|.|+.+|+.-
T Consensus        19 d~~g~i~~~eF~~~~--~~~---~~~~~~l~~~F~~~D~d~~G~I~~~el~~   65 (108)
T 1rro_A           19 QDPDTFEPQKFFQTS--GLS---KMSASQVKDIFRFIDNDQSGYLDGDELKY   65 (108)
T ss_dssp             CSTTCCCHHHHHHHH--SGG---GSCHHHHHHHHHHHCTTCSSEECTHHHHT
T ss_pred             cCCCCcCHHHHHHHH--hcC---cccHHHHHHHHHHhCCCCCCcCCHHHHHH
Confidence            478899999998764  221   23455667789999999999999999864

>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein, calcium-binding protein, NHE1 regulating protein; 2.70A {Homo sapiens}

Probab=90.64  E-value=0.2  Score=42.37  Aligned_cols=56  Identities=16%  Similarity=0.101  Sum_probs=42.3

Q ss_pred             hhcccCCCccchHHHHHHHHHHcC--------------CCCHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952          291 AADIDEDGVVSAAEFIIYKLKEMG--------------KISQEDIALVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       291 ~~~l~~~g~v~~~e~v~~~l~~~~--------------~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      ..|.+++|.|+..||+........              .......+.+...|...|.|++|.|+.+|+.-
T Consensus        69 ~~D~d~dg~i~~~EF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~dG~Is~~El~~  138 (202)
T 2bec_A           69 SFFPDGSQRVDFPGFVRVLAHFRPVEDEDTETQDPKKPEPLNSRRNKLHYAFQLYDLDRDGKISRHEMLQ  138 (202)
T ss_dssp             TTSCSSCCCCCHHHHHHHHGGGSCCCHHHHC-----CCCCTTSHHHHHHHHHHHHCTTCSSEECHHHHHH
T ss_pred             HhCCCCCCcCcHHHHHHHHHHhcccchhcccccccccccccccHHHHHHHHHHHhCCCCCCeEcHHHHHH
Confidence            456788999999999887544332              01344566778899999999999999999864

>2bl0_C Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}

Probab=90.62  E-value=0.25  Score=38.83  Aligned_cols=51  Identities=18%  Similarity=0.341  Sum_probs=24.4

Q ss_pred             cccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          293 DIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       293 ~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      |.+++|.++..||+...........  ..+.+...|..+|.|++|.|+.+|+.
T Consensus        52 d~~~~g~i~~~eF~~~~~~~~~~~~--~~~~~~~~F~~~D~d~~G~i~~~el~  102 (142)
T 2bl0_C           52 DATGNGKIQFPEFLSMMGRRMKQTT--SEDILRQAFRTFDPEGTGYIPKAALQ  102 (142)
T ss_dssp             CTTCSSEEEHHHHHHHHHHHHTTCC--CHHHHHHHHHHTCCSSCSCEEHHHHH
T ss_pred             CcCCCCeeeHHHHHHHHHHHhcCCC--hHHHHHHHHHHHCCCCCCcCcHHHHH
Confidence            3445556666555554433221111  12233445555566666666665543

>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora erythraea} SCOP: a.39.1.5

Probab=90.62  E-value=0.39  Score=39.05  Aligned_cols=55  Identities=15%  Similarity=0.170  Sum_probs=41.2

Q ss_pred             hhcccCCCccchHHHHHHHHHHcCCCCH---H--HHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          291 AADIDEDGVVSAAEFIIYKLKEMGKISQ---E--DIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       291 ~~~l~~~g~v~~~e~v~~~l~~~~~~~~---~--~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      ..|.+++|.++..||+............   +  ..+.+.+.|...|.|++|.|+.+|+.
T Consensus        66 ~~D~d~dg~i~~~Ef~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~e~~  125 (176)
T 1nya_A           66 EAGVGSDGSLTEEQFIRVTENLIFEQGEASFNRVLGPVVKGIVGMCDKNADGQINADEFA  125 (176)
T ss_dssp             HHTSCTTCCBCHHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTCSSCCSEEEHHHHH
T ss_pred             HhCCCCCCeEcHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHhcCCCCCCCCHHHHH
Confidence            4567899999999998876655444442   1  13456777999999999999999975

>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A 2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A 1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A

Probab=90.41  E-value=0.17  Score=38.20  Aligned_cols=48  Identities=21%  Similarity=0.260  Sum_probs=36.2

Q ss_pred             ccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952          294 IDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       294 l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      ++++|.++-.||+...-  ..   +...+.+.+.|...|.|++|.|+.+|+.-
T Consensus        18 ~d~~g~i~~~eF~~~~~--~~---~~~~~~l~~~F~~~D~d~~G~I~~~el~~   65 (108)
T 2pvb_A           18 CSAADSFKHKEFFAKVG--LA---SKSLDDVKKAFYVIDQDKSGFIEEDELKL   65 (108)
T ss_dssp             TCSTTCCCHHHHHHHHT--GG---GSCHHHHHHHHHHHCTTCSSSBCHHHHHT
T ss_pred             hCCCCcCcHHHHHHHHh--CC---hhHHHHHHHHHHHHCCCCCCcCCHHHHHH
Confidence            34788999999987642  21   23455667789999999999999999864

>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A

Probab=90.40  E-value=0.2  Score=40.33  Aligned_cols=48  Identities=31%  Similarity=0.612  Sum_probs=23.2

Q ss_pred             cccCCCccchHHHHHHHHHHcC-CCCHHHHHHHHHHhhhcCCCCCCccChhhh
Q 047952          293 DIDEDGVVSAAEFIIYKLKEMG-KISQEDIALVMEEFQDLDFDQSGTLSPSDL  344 (354)
Q Consensus       293 ~l~~~g~v~~~e~v~~~l~~~~-~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~  344 (354)
                      |.+++|.++..|+.. .+...| ..+.++++.+   +...|.|+||.|+-+|.
T Consensus        93 D~d~~G~I~~~El~~-~l~~~g~~~~~~e~~~l---~~~~D~d~dG~I~~~EF  141 (148)
T 2lmt_A           93 DRDGDGFISPAELRF-VMINLGEKVTDEEIDEM---IREADFDGDGMINYEEF  141 (148)
T ss_dssp             HSSCSSEECHHHHHH-HHHHHTCCCCHHHHHHH---HHHHCCSCCSSEEHHHH
T ss_pred             CCCCcCcCcHHHHHH-HHHHcCccccHHHHHHH---HHHhCCCCCCeEeHHHH
Confidence            445555566555432 233333 4445554443   33445566666665553

>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation, calcium, metal binding protein; 1.95A {Gallus gallus} SCOP: a.39.1.4 PDB: 2kqy_A

Probab=90.06  E-value=0.14  Score=38.79  Aligned_cols=47  Identities=21%  Similarity=0.189  Sum_probs=35.8

Q ss_pred             cCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952          295 DEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       295 ~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      +++|.++-.||+...-.     .....+.+.+.|...|.|++|.|+.+|+.-
T Consensus        20 D~~g~i~~~eF~~~~~~-----~~~~~~~l~~~F~~~D~d~~G~i~~~el~~   66 (109)
T 3fs7_A           20 QAADSFNYKSFFSTVGL-----SSKTPDQIKKVFGILDQDKSGFIEEEELQL   66 (109)
T ss_dssp             CSTTCCCHHHHHHHHTC-----TTCCHHHHHHHHHHHSTTCSSSBCHHHHHT
T ss_pred             CCCCcCcHHHHHHHHhc-----CCCcHHHHHHHHHHHCCCCCCeEeHHHHHH
Confidence            47889999998876422     223445667789999999999999999864

>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6

Probab=90.04  E-value=0.15  Score=38.09  Aligned_cols=29  Identities=28%  Similarity=0.185  Sum_probs=18.6

Q ss_pred             CHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          317 SQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       317 ~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      ++++.+++.+.|..+|.|+||.|+.+|+.
T Consensus         5 s~~~~~~~~~~F~~~D~d~dG~I~~~el~   33 (95)
T 1c07_A            5 SPAEKAKYDEIFLKTDKDMDGFVSGLEVR   33 (95)
T ss_dssp             CSHHHHHHHHHHHHHCTTCSSEECHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCCCcEeHHHHH
Confidence            44556666666666666666666666654

>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A

Probab=89.96  E-value=0.33  Score=39.35  Aligned_cols=53  Identities=15%  Similarity=0.384  Sum_probs=31.6

Q ss_pred             hhhhcccCCCccchHHHHHHHHHHcC-CCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          289 LEAADIDEDGVVSAAEFIIYKLKEMG-KISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       289 l~~~~l~~~g~v~~~e~v~~~l~~~~-~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      ....|.+++|.++..|+... +...| .+++++++.+   |...|.|+||.|+.+|+.
T Consensus       107 F~~~D~d~~G~i~~~el~~~-l~~~g~~~~~~~~~~~---~~~~D~~~dg~i~~~eF~  160 (169)
T 3qrx_A          107 FRLFDDDNSGTITIKDLRRV-AKELGENLTEEELQEM---IAEADRNDDNEIDEDEFI  160 (169)
T ss_dssp             HHHHCTTCSSSBCHHHHHHH-HHHTTCCCCHHHHHHH---HHHHCCSSSSCBCHHHHH
T ss_pred             HHHhCCCCCCcCCHHHHHHH-HHHcCCCCCHHHHHHH---HHHhCCCCCCCEeHHHHH
Confidence            34445567777777665544 33333 4566665554   455577777777777754

>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma lanceolatum} SCOP: a.39.1.5

Probab=89.86  E-value=0.35  Score=39.63  Aligned_cols=55  Identities=16%  Similarity=0.245  Sum_probs=41.8

Q ss_pred             hh-cccCCCccchHHHHHHHHHHc----CCCCHHHHHHHHHH--------hhhcCCCCCCccChhhhh
Q 047952          291 AA-DIDEDGVVSAAEFIIYKLKEM----GKISQEDIALVMEE--------FQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       291 ~~-~l~~~g~v~~~e~v~~~l~~~----~~~~~~~l~~i~~~--------f~~ld~~~~g~l~~~d~~  345 (354)
                      .. |.+++|.++..|+....-.-.    ...+.++++.+.+.        |...|.|++|.|+.+++.
T Consensus        16 ~~~D~d~dG~i~~~E~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~   83 (185)
T 2sas_A           16 FFLDMNHDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDEWRDLKGRADINKDDVVSWEEYL   83 (185)
T ss_dssp             HHTCTTCSSEECHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHHCTTCSSCEEHHHHH
T ss_pred             HheeCCCCCeEcHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEcHHHHH
Confidence            45 778999999988855432222    36778888877644        999999999999999974

>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand, cross-reactivity; 1.75A {Phleum pratense} SCOP: a.39.1.10

Probab=89.84  E-value=0.42  Score=33.56  Aligned_cols=51  Identities=22%  Similarity=0.431  Sum_probs=37.9

Q ss_pred             hhcccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          291 AADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       291 ~~~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      ..|.+++|.++..|+... +...|..++++++.+   |...|.|++|.++.++..
T Consensus        11 ~~D~~~~G~i~~~el~~~-l~~~g~~~~~~~~~~---~~~~D~~~dg~i~~~ef~   61 (78)
T 1k9u_A           11 RFDTNGDGKISLSELTDA-LRTLGSTSADEVQRM---MAEIDTDGDGFIDFNEFI   61 (78)
T ss_dssp             HHCTTCSSEECHHHHHHH-HHHHHTCCHHHHHHH---HHHHCTTCSSSEEHHHHH
T ss_pred             HHCCCCCCcCcHHHHHHH-HHHhCCCCHHHHHHH---HHHhCCCCCCeEcHHHHH
Confidence            446789999998876544 444457777777654   667799999999999864

>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8 PDB: 1k95_A 1f4q_A 1f4o_A

Probab=89.67  E-value=0.44  Score=38.67  Aligned_cols=47  Identities=26%  Similarity=0.258  Sum_probs=35.8

Q ss_pred             hhcccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952          291 AADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       291 ~~~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      ..|.+++|.++..||+...-.         ++.+.+.|...|.|++|.|+.+|+.-
T Consensus        48 ~~D~~~~g~i~~~eF~~~~~~---------~~~~~~~F~~~D~d~~G~i~~~el~~   94 (165)
T 1k94_A           48 MLDRDHTGKMGFNAFKELWAA---------LNAWKENFMTVDQDGSGTVEHHELRQ   94 (165)
T ss_dssp             HHCTTCSSCBCHHHHHHHHHH---------HHHHHHHHHHHCTTCCSBCCHHHHHH
T ss_pred             HhCCCCCCcCCHHHHHHHHHH---------HHHHHHHHHHhCCCCCceECHHHHHH
Confidence            346678888998888775432         35677788999999999999998753

>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP: a.39.1.4

Probab=89.56  E-value=0.17  Score=38.26  Aligned_cols=48  Identities=17%  Similarity=0.165  Sum_probs=35.8

Q ss_pred             ccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952          294 IDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       294 l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      ++++|.++-.||+...-.  .   .+..+.+.+.|...|.|++|.|+.+|+.-
T Consensus        19 ~d~~g~i~~~eF~~~~~~--~---~~~~~~l~~~F~~~D~d~~G~I~~~el~~   66 (109)
T 1bu3_A           19 CEAADSFNYKAFFAKVGL--T---AKSADDIKKAFFVIDQDKSGFIEEDELKL   66 (109)
T ss_dssp             TCSTTCCCHHHHHHHHTG--G---GSCHHHHHHHHHHHCTTCSSSEEHHHHHT
T ss_pred             hCCCCcCcHHHHHHHHHc--C---hhhHHHHHHHHHHHCCCCCCcCcHHHHHH
Confidence            347889999998875421  1   23455677789999999999999999764

>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}

Probab=89.51  E-value=0.72  Score=33.71  Aligned_cols=51  Identities=25%  Similarity=0.403  Sum_probs=38.5

Q ss_pred             hhhcccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          290 EAADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       290 ~~~~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      ...|.+++|.++..|+.. .+...| .+.++++.   -|..+|.|++|.|+.+|..
T Consensus        34 ~~~D~d~~G~I~~~El~~-~l~~~g-~~~~~~~~---~~~~~D~d~dg~I~~~EF~   84 (91)
T 2pmy_A           34 AACDANRSGRLEREEFRA-LCTELR-VRPADAEA---VFQRLDADRDGAITFQEFA   84 (91)
T ss_dssp             HHHCTTCSSSEEHHHHHH-HHHHTT-CCHHHHHH---HHHHHCTTCSSEECHHHHT
T ss_pred             HHHCCCCCCCCcHHHHHH-HHHHcC-cCHHHHHH---HHHHhCCCCCCCEeHHHHH
Confidence            345678999999887665 456667 67766655   4667799999999999865

>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A

Probab=89.47  E-value=0.53  Score=38.07  Aligned_cols=54  Identities=28%  Similarity=0.439  Sum_probs=41.6

Q ss_pred             hhcccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952          291 AADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       291 ~~~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      ..|.+++|.++..||+........  .....+.+.+.|..+|.|++|.|+.+|+.-
T Consensus        72 ~~d~~~~g~i~~~eF~~~~~~~~~--~~~~~~~~~~~F~~~D~d~~G~i~~~el~~  125 (169)
T 3qrx_A           72 EIDKDGSGTIDFEEFLTMMTAKMG--ERDSREEILKAFRLFDDDNSGTITIKDLRR  125 (169)
T ss_dssp             HHCSSSSSSEEHHHHHHHHHHHHH--HHHHHHHHHHHHHHHCTTCSSSBCHHHHHH
T ss_pred             HhcCCCCCcCCHHHHHHHHHHHhc--ccCcHHHHHHHHHHhCCCCCCcCCHHHHHH
Confidence            446788999999999887654432  234456677889999999999999999754

>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin; EF-hands, calcium, metal binding protein; 2.17A {Bos taurus} PDB: 2f2p_A

Probab=89.45  E-value=0.37  Score=39.57  Aligned_cols=48  Identities=27%  Similarity=0.547  Sum_probs=22.2

Q ss_pred             cccCCCccchHHHHHHHHHHcC-CCCHHHHHHHHHHhhhcCCCCCCccChhhh
Q 047952          293 DIDEDGVVSAAEFIIYKLKEMG-KISQEDIALVMEEFQDLDFDQSGTLSPSDL  344 (354)
Q Consensus       293 ~l~~~g~v~~~e~v~~~l~~~~-~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~  344 (354)
                      |.+++|.++..|+... +...| .++.++++.+   |...|.|++|.|+.++.
T Consensus        94 D~d~~G~I~~~E~~~~-l~~~g~~~~~~~~~~~---~~~~D~~~dg~i~~~eF  142 (179)
T 2f2o_A           94 DKDGNGYISAAELRHV-MTNLGEKLTDEEVDEM---IREADIDGDGQVNYEEF  142 (179)
T ss_dssp             CTTCSSEECHHHHHHH-HHHC--CCCHHHHHHH---HHHHCTTCSSSEEHHHH
T ss_pred             CCCCCCcCcHHHHHHH-HHHhCCCCCHHHHHHH---HHHcCCCCCCcCcHHHH
Confidence            4445555555544333 22222 3444444433   33345556666665554

>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein, calcium-binding protein, NHE1 regulating protein; 2.70A {Homo sapiens}

Probab=89.42  E-value=0.4  Score=40.41  Aligned_cols=56  Identities=27%  Similarity=0.465  Sum_probs=43.2

Q ss_pred             hhhcccCCCccchHHHHHHHHHHc-C-CCCHHHHHHHHHH-hhhcCCCCCCccChhhhhh
Q 047952          290 EAADIDEDGVVSAAEFIIYKLKEM-G-KISQEDIALVMEE-FQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       290 ~~~~l~~~g~v~~~e~v~~~l~~~-~-~~~~~~l~~i~~~-f~~ld~~~~g~l~~~d~~~  346 (354)
                      ...|.+++|.++..|+... +... | .+++++++.+.+. |...|.|+||.|+.+|+.-
T Consensus       121 ~~~D~d~dG~Is~~El~~~-l~~~~g~~~~~~~~~~~~~~~~~~~D~d~dG~Is~~EF~~  179 (202)
T 2bec_A          121 QLYDLDRDGKISRHEMLQV-LRLMVGVQVTEEQLENIADRTVQEADEDGDGAVSFVEFTK  179 (202)
T ss_dssp             HHHCTTCSSEECHHHHHHH-HHHSCCSCCCHHHHHHHHHHHHHHHCSSCSSSEEHHHHHH
T ss_pred             HHhCCCCCCeEcHHHHHHH-HHHhcCCCCCHHHHHHHHHHHHHHcCCCCCCcCcHHHHHH
Confidence            3457789999999887655 4444 4 5789998887664 7779999999999999653

>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding, phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8

Probab=89.36  E-value=0.44  Score=38.82  Aligned_cols=47  Identities=28%  Similarity=0.314  Sum_probs=36.7

Q ss_pred             hhcccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952          291 AADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       291 ~~~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      ..|.+++|.++..||+...-.         ++.+.+.|...|.|++|.|+.+|+.-
T Consensus        50 ~~D~~~~g~i~~~eF~~~~~~---------~~~~~~~F~~~D~d~~G~i~~~el~~   96 (167)
T 1gjy_A           50 MLDRDMSGTMGFNEFKELWAV---------LNGWRQHFISFDSDRSGTVDPQELQK   96 (167)
T ss_dssp             HHCTTCCSCBCHHHHHHHHHH---------HHHHHHHHHHHCTTCCSEECHHHHHH
T ss_pred             HHCCCCCCcCCHHHHHHHHHH---------HHHHHHHHHHhCCCCCCcCCHHHHHH
Confidence            346678899999888876532         35677789999999999999999754

>2kyc_A Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand protein, calcium binding protein; NMR {Gallus gallus} PDB: 2kyf_A

Probab=89.28  E-value=0.13  Score=38.78  Aligned_cols=48  Identities=27%  Similarity=0.319  Sum_probs=36.5

Q ss_pred             ccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952          294 IDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       294 l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      ++++|.++-.||+...  ..   ..+..+.+.+.|...|.|++|.|+.+|+.-
T Consensus        18 ~d~~g~i~~~eF~~~~--~~---~~~~~~~l~~~F~~~D~d~~G~I~~~el~~   65 (108)
T 2kyc_A           18 CQAPDSFSPKKFFQIS--GM---SKKSSSQLKEIFRILDNDQSGFIEEDELKY   65 (108)
T ss_dssp             SCSTTTCCHHHHHHHH--TC---TTCCSSSHHHHCSSSCSCCSSCCCGGGTTT
T ss_pred             cCCCCcCCHHHHHHHH--hh---CcccHHHHHHHHHHhCCCCCCeEcHHHHHH
Confidence            3488899999998764  22   223345667889999999999999999764

>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A

Probab=89.27  E-value=0.36  Score=38.66  Aligned_cols=51  Identities=22%  Similarity=0.267  Sum_probs=24.6

Q ss_pred             cccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          293 DIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       293 ~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      |.+++|.++..||+...........  ..+.+...|..+|.|++|.|+.+|+.
T Consensus        69 d~~~~g~i~~~eF~~~~~~~~~~~~--~~~~~~~~F~~~D~d~~G~i~~~el~  119 (161)
T 3fwb_A           69 DSEGRHLMKYDDFYIVMGEKILKRD--PLDEIKRAFQLFDDDHTGKISIKNLR  119 (161)
T ss_dssp             CTTSSSCEEHHHHHHHHHHHHHTCC--HHHHHHHHHHHHCTTCSSEECHHHHH
T ss_pred             CcCCCCeEeHHHHHHHHHHHHhcCC--cHHHHHHHHHHHcCCCCCeEeHHHHH
Confidence            3445555665555554433222111  12333445555566666666665544

>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase structural genomics malaria, structural genom consortium, SGC, ATP-binding; 1.15A {Plasmodium falciparum} PDB: 3o4y_A

Probab=89.25  E-value=0.16  Score=42.97  Aligned_cols=52  Identities=27%  Similarity=0.474  Sum_probs=39.3

Q ss_pred             hhcccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952          291 AADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       291 ~~~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      ..|.+++|.++..||+....... ....+   .+...|..+|.|++|.|+.+|+.-
T Consensus        95 ~~D~d~~g~i~~~EF~~~~~~~~-~~~~~---~l~~~F~~~D~d~~G~Is~~El~~  146 (191)
T 3k21_A           95 QIDSDGSGKIDYTEFIAAALDRK-QLSKK---LIYCAFRVFDVDNDGEITTAELAH  146 (191)
T ss_dssp             HHCTTCSSSEEHHHHHHHHSCGG-GCCHH---HHHHHHHHHSTTCSSCBCHHHHHH
T ss_pred             HhCCCCCCeEeHHHHHHHHHhhh-hccHH---HHHHHHHHhCCCCCCcCCHHHHHH
Confidence            44678899999999988764333 23344   445679999999999999999764

>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.00A {Beroe abyssicola}

Probab=89.25  E-value=0.4  Score=40.64  Aligned_cols=55  Identities=18%  Similarity=0.143  Sum_probs=38.0

Q ss_pred             hhcccCCCccchHHHHHHHHH--------HcCCCCHHHHHH-HHHHhhhcCCCCCCccChhhhhh
Q 047952          291 AADIDEDGVVSAAEFIIYKLK--------EMGKISQEDIAL-VMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       291 ~~~l~~~g~v~~~e~v~~~l~--------~~~~~~~~~l~~-i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      ..|.+++|.|+..||+.....        .... .++..++ +.+.|...|.|++|.|+.+|+.-
T Consensus        89 ~~D~d~dg~i~~~EF~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~F~~~D~d~~G~Is~~El~~  152 (208)
T 2hpk_A           89 HKGVEPVNGLLREDWVEANRVFAEAERERERRG-EPSLIALLSNSYYDVLDDDGDGTVDVDELKT  152 (208)
T ss_dssp             HTTCBTTTBEEGGGHHHHHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHCTTCSSSBCHHHHHH
T ss_pred             HhCCCCCCeEcHHHHHHHHHHHhhhhhhhhccC-ChHHHHHHHHHHHHHhCCCCCCcCCHHHHHH
Confidence            456788999999999887541        2211 1122223 56789999999999999999753

>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal binding protein; NMR {Entamoeba histolytica} SCOP: a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A

Probab=89.17  E-value=0.22  Score=38.38  Aligned_cols=56  Identities=20%  Similarity=0.272  Sum_probs=37.8

Q ss_pred             hhcccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952          291 AADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       291 ~~~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      ..|.+++|.++..||+.....-........-+++...|...|.|++|.|+.+|+.-
T Consensus        44 ~~D~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~d~~G~i~~~e~~~   99 (134)
T 1jfj_A           44 SIDADGNGEIDQNEFAKFYGSIQGQDLSDDKIGLKVLYKLMDVDGDGKLTKEEVTS   99 (134)
T ss_dssp             HHCSSCCSEEEHHHHHHHTTCSSCCSSHHHHHHHHHHHHHHCCSSSSEEEHHHHHH
T ss_pred             HHcCCCCCeEcHHHHHHHHHHhcccccCCCHHHHHHHHHHHCCCCCCccCHHHHHH
Confidence            44667888999888876542100122233344477889999999999999998754

>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A

Probab=89.13  E-value=0.81  Score=32.71  Aligned_cols=53  Identities=11%  Similarity=0.232  Sum_probs=38.5

Q ss_pred             hhcccCCCccchHHHHHHHHHHcC-CCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          291 AADIDEDGVVSAAEFIIYKLKEMG-KISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       291 ~~~l~~~g~v~~~e~v~~~l~~~~-~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      .-|.+++|.++..|+. ..+...| ..+.++.+.+.+-+...|.|++|.|+. +..
T Consensus        22 ~~D~d~~G~I~~~el~-~~l~~~g~~~~~~~~~~~~~~~~~~d~~~~g~i~~-eF~   75 (86)
T 1j7q_A           22 IFDRNAENIAPVSDTM-DMLTKLGQTYTKRETEAIMKEARGPKGDKKNIGPE-EWL   75 (86)
T ss_dssp             HHSTTTTSCBCHHHHH-HHHHHTSCCCSHHHHHHHHHHHHCSSCSSCCBCTT-HHH
T ss_pred             HhCCCCCCcCcHHHHH-HHHHHHcCCCCHHHHHHHHHHHHHhCCCCCCcCCH-HHH
Confidence            3466789999987765 4456666 466777344555677889999999999 864

>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP, structural genomics, PSI; 1.95A {Leishmania major} SCOP: a.39.1.8

Probab=89.07  E-value=0.48  Score=39.73  Aligned_cols=43  Identities=23%  Similarity=0.322  Sum_probs=21.2

Q ss_pred             cccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhh
Q 047952          293 DIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDL  344 (354)
Q Consensus       293 ~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~  344 (354)
                      |.+++|.++..||+...-.         ++.+.+.|...|.|++|.|+.+|+
T Consensus        73 D~d~dG~I~~~EF~~~~~~---------~~~~~~~F~~~D~d~~G~i~~~e~  115 (191)
T 1y1x_A           73 DKNHSGEITFDEFKDLHHF---------ILSMREGFRKRDSSGDGRLDSNEV  115 (191)
T ss_dssp             CTTCSSSBCHHHHHHHHHH---------HHHHHHHHHHHCTTSSSCBCHHHH
T ss_pred             CCCCCCeEcHHHHHHHHHH---------HHHHHHHHHHhCCCCCCeEcHHHH
Confidence            4455555665555543221         233444455555555555555554

>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A

Probab=89.03  E-value=0.22  Score=35.87  Aligned_cols=30  Identities=30%  Similarity=0.337  Sum_probs=20.1

Q ss_pred             CCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          316 ISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       316 ~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      .++++++++.+.|...|.|++|.|+.+|+.
T Consensus         5 ~~~~~~~~l~~~F~~~D~d~~G~i~~~el~   34 (86)
T 2opo_A            5 DTPQDIADRERIFKRFDTNGDGKISSSELG   34 (86)
T ss_dssp             -CHHHHHHHHHHHHHHCTTCSSEEEHHHHH
T ss_pred             CCHhhHHHHHHHHHHHCCCCCCCcCHHHHH
Confidence            456666667777777777777777777654

>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 2lhh_A 1f54_A 1f55_A

Probab=88.99  E-value=0.49  Score=37.10  Aligned_cols=49  Identities=18%  Similarity=0.415  Sum_probs=21.3

Q ss_pred             ccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhh
Q 047952          294 IDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDL  344 (354)
Q Consensus       294 l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~  344 (354)
                      .+++|.++..||+........  .....+.+.+.|..+|.|++|.|+.+|+
T Consensus        58 ~~~~g~i~~~ef~~~~~~~~~--~~~~~~~~~~~F~~~D~d~~G~i~~~e~  106 (147)
T 4ds7_A           58 VDGNHAIEFSEFLALMSRQLK--CNDSEQELLEAFKVFDKNGDGLISAAEL  106 (147)
T ss_dssp             TTSSSEEEHHHHHHHHHHHHH--THHHHHHHHHHHHHHCTTCSSEECHHHH
T ss_pred             cCCCCcCcHHHHHHHHHHhcc--CCCcHHHHHHHHHHhCCCCCCeECHHHH
Confidence            344555555555444322211  1122233344455555555555555554

>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}

Probab=88.99  E-value=0.23  Score=34.73  Aligned_cols=29  Identities=24%  Similarity=0.389  Sum_probs=20.7

Q ss_pred             CHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          317 SQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       317 ~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      ++++++.+.+.|...|.|++|.|+.+|+.
T Consensus         2 s~~~~~~l~~~F~~~D~d~~G~i~~~el~   30 (77)
T 2joj_A            2 SEEQKQEIKEAFDLFDTNKTGSIDYHELK   30 (77)
T ss_dssp             CHHHHHHHHHHHHHHCCSSSSEEEHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCCCCCcHHHHH
Confidence            45666777777777777777777777754

>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic, ER, golgi, transport, disulfide bond, endopla reticulum, ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A 3lcp_C

Probab=88.86  E-value=0.13  Score=41.58  Aligned_cols=57  Identities=18%  Similarity=0.190  Sum_probs=22.5

Q ss_pred             hhhhcccCCCccchHHHHHHHHHHcC----CCCHHHHHHHHHHhhhcCCCCCCccChhhhhhc
Q 047952          289 LEAADIDEDGVVSAAEFIIYKLKEMG----KISQEDIALVMEEFQDLDFDQSGTLSPSDLFLA  347 (354)
Q Consensus       289 l~~~~l~~~g~v~~~e~v~~~l~~~~----~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~~  347 (354)
                      ....|.+++|.|+..||.........    ...  ..+.+.+.|...|.|+||.|+.+|+.-.
T Consensus        33 f~~~D~d~dG~I~~~Ef~~~l~~~~~~~~~~~~--~~~~l~~~F~~~D~d~dG~I~~~El~~~   93 (143)
T 3a4u_B           33 PGSMGLDKNTVHDQEHIMEHLEGVINKPEAEMS--PQELQLHYFKMHDYDGNNLLDGLELSTA   93 (143)
T ss_dssp             ------------------------------CCC--HHHHHHHHHHHTCTTCSSCEEHHHHHHT
T ss_pred             HHHhCCCCCCcCcHHHHHHHHHHHhcccccccC--HHHHHHHHHHHhCCCCCCccCHHHHHHH
Confidence            35667789999999998765432211    112  2245566799999999999999998643

>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A*

Probab=88.82  E-value=0.56  Score=38.73  Aligned_cols=53  Identities=21%  Similarity=0.147  Sum_probs=40.2

Q ss_pred             hcccCCCc-cchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952          292 ADIDEDGV-VSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       292 ~~l~~~g~-v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      .|.+++|. ++..||+............  -+.+...|...|.|++|.|+.+|+.-
T Consensus        69 ~D~d~~G~~I~~~EF~~~~~~~~~~~~~--~~~l~~~F~~~D~d~~G~I~~~El~~  122 (183)
T 1dgu_A           69 FSTSPAKDSLSFEDFLDLLSVFSDTATP--DIKSHYAFRIFDFDDDGTLNREDLSR  122 (183)
T ss_dssp             HSCSSSSCCCCHHHHHHHHHHHSTTCCH--HHHHHHHHHHHCTTCSSEEEHHHHHH
T ss_pred             hCCCCCCCEecHHHHHHHHHHhcCCCCH--HHHHHHHHHHhCCCCCCcCCHHHHHH
Confidence            36678999 9999998877654433332  24567789999999999999999854

>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP; 2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A 2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A* 1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A* 3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...

Probab=88.81  E-value=0.4  Score=38.43  Aligned_cols=56  Identities=20%  Similarity=0.329  Sum_probs=38.2

Q ss_pred             hhcccCCCccchHHHHHHHHHHcCC-CCHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952          291 AADIDEDGVVSAAEFIIYKLKEMGK-ISQEDIALVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       291 ~~~l~~~g~v~~~e~v~~~l~~~~~-~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      ..|.+++|.++..||+......... ......+.+.+.|...|.|++|.|+.+++.-
T Consensus        63 ~~D~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~i~~~El~~  119 (161)
T 1dtl_A           63 EVDEDGSGTVDFDEFLVMMVRSMKDDSKGKSEEELSDLFRMFDKNADGYIDLEELKI  119 (161)
T ss_dssp             HHCTTSSSSBCHHHHHHHHHHHHC-----CHHHHHHHHHHHHCTTCSSEEEHHHHGG
T ss_pred             HhCCCCCCeEcHHHHHHHHHHHhcccccchHHHHHHHHHHHhCCCCCCcCcHHHHHH
Confidence            3456788889988888776554320 0123345567788888999999999988754

>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis thaliana} PDB: 1v1g_A 1v1f_A

Probab=88.74  E-value=0.69  Score=39.01  Aligned_cols=56  Identities=16%  Similarity=0.267  Sum_probs=43.0

Q ss_pred             hhhcccCCCccchHHHHHHHH---HH-cCCCCHHHHHHHH-HHhhhcCCCCCCccChhhhh
Q 047952          290 EAADIDEDGVVSAAEFIIYKL---KE-MGKISQEDIALVM-EEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       290 ~~~~l~~~g~v~~~e~v~~~l---~~-~~~~~~~~l~~i~-~~f~~ld~~~~g~l~~~d~~  345 (354)
                      ...|.+++|.++..|+....-   .. ...+++++++.+. +.|...|.|+||.|+.+|+.
T Consensus       118 ~~~D~d~~G~I~~~E~~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~  178 (207)
T 2ehb_A          118 KLYDLRQTGFIEREELKEMVVALLHESELVLSEDMIEVMVDKAFVQADRKNDGKIDIDEWK  178 (207)
T ss_dssp             HHHCTTCCSSEEHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHCTTCSSEECHHHHH
T ss_pred             HHhCCCCCCcCcHHHHHHHHHHHHHHcccccCHHHHHHHHHHHHHHhCCCCCCcCcHHHHH
Confidence            345778999999988765432   23 3468888887764 56999999999999999964

>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand, phosphoprotein, calcium binding; 2.65A {Homo sapiens}

Probab=88.67  E-value=0.54  Score=39.44  Aligned_cols=52  Identities=25%  Similarity=0.284  Sum_probs=39.6

Q ss_pred             hcccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952          292 ADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       292 ~~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      .|.+++|.++..||+....   ........+.+...|..+|.|++|.|+.+|+.-
T Consensus        82 ~D~d~dg~i~~~ef~~~~~---~~~~~~~~~~~~~~F~~~D~d~~G~I~~~El~~  133 (204)
T 3e3r_A           82 WDRNGSGTLDLEEFLRALR---PPMSQAREAVIAAAFAKLDRSGDGVVTVDDLRG  133 (204)
T ss_dssp             HCTTCSSSBCHHHHHHHTS---CCCCHHHHHHHHHHHHHHCTTCSSEECHHHHHH
T ss_pred             hccCCCCcCcHHHHHHHHH---hhcCchHHHHHHHHHHHhCcCCCCeEeHHHHHH
Confidence            3567888999888876642   233445566778889999999999999999764

>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB: 2jc2_A

Probab=88.60  E-value=0.52  Score=39.66  Aligned_cols=47  Identities=28%  Similarity=0.318  Sum_probs=35.4

Q ss_pred             hhcccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952          291 AADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       291 ~~~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      ..|.+++|.++..||+...-.         ++.+.+.|...|.|++|.|+.+|+.-
T Consensus        81 ~~D~d~~g~i~~~eF~~~~~~---------~~~~~~~F~~~D~d~~G~I~~~el~~  127 (198)
T 1juo_A           81 MLDRDMSGTMGFNEFKELWAV---------LNGWRQHFISFDTDRSGTVDPQELQK  127 (198)
T ss_dssp             HHCTTCSSCEEHHHHHHHHHH---------HHHHHHHHHTTCTTCCSEECHHHHHH
T ss_pred             HhCCCCCCeECHHHHHHHHHH---------HHHHHHHHHHhCCCCCCcCCHHHHHH
Confidence            345678888888888775432         35677788889999999999988753

>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent kinase, structural genomics, structural GE consortium, SGC, ATP-binding; 1.95A {Toxoplasma gondii}

Probab=88.51  E-value=0.24  Score=41.08  Aligned_cols=53  Identities=26%  Similarity=0.445  Sum_probs=31.7

Q ss_pred             hhcccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952          291 AADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       291 ~~~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      ..|.+++|.++..||+............+   .+...|...|.|++|.|+.+|+.-
T Consensus        95 ~~D~d~~g~i~~~ef~~~~~~~~~~~~~~---~~~~~F~~~D~d~~G~I~~~E~~~  147 (191)
T 3khe_A           95 SVDFDRNGYIEYSEFVTVCMDKQLLLSRE---RLLAAFQQFDSDGSGKITNEELGR  147 (191)
T ss_dssp             HTCTTCSSSEEHHHHHHHHSCHHHHCCHH---HHHHHHHHHCTTCSSEECHHHHHH
T ss_pred             HhCCCCCCcCCHHHHHHHHHHhcccchHH---HHHHHHHHHCCCCcCcCCHHHHHH
Confidence            34566777777777776543322223333   345566777777777777777653

>2zfd_A Calcineurin B-like protein 2; calcium binding protein, protein-protein complex, ATP-bindin kinase, nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP: a.39.1.5 PDB: 1uhn_A

Probab=88.40  E-value=0.65  Score=40.12  Aligned_cols=56  Identities=16%  Similarity=0.345  Sum_probs=43.2

Q ss_pred             hhhcccCCCccchHHHHHHHH---HHcC-CCCHHHHHHHH-HHhhhcCCCCCCccChhhhh
Q 047952          290 EAADIDEDGVVSAAEFIIYKL---KEMG-KISQEDIALVM-EEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       290 ~~~~l~~~g~v~~~e~v~~~l---~~~~-~~~~~~l~~i~-~~f~~ld~~~~g~l~~~d~~  345 (354)
                      ...|.+++|.++..|+....-   ...| .+++++++.+. +.|...|.|+||.|+.+|+.
T Consensus       129 ~~~D~d~~G~Is~~E~~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~EF~  189 (226)
T 2zfd_A          129 QLYDLKQQGFIERQEVKQMVVATLAESGMNLKDTVIEDIIDKTFEEADTKHDGKIDKEEWR  189 (226)
T ss_dssp             HHHCTTSSSSEEHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHCSSCSSEECHHHHH
T ss_pred             HHhCCCCCCcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhCCCCCCcCcHHHHH
Confidence            345778999999988765542   2334 67888888775 56899999999999999964

>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata} SCOP: a.39.1.4

Probab=88.39  E-value=0.32  Score=36.64  Aligned_cols=47  Identities=28%  Similarity=0.256  Sum_probs=34.6

Q ss_pred             cCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952          295 DEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       295 ~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      +.+|.++-.||+...-  ..   .+..+.+.+.|...|.|++|.|+.+|+.-
T Consensus        19 d~~g~i~~~eF~~~~~--~~---~~~~~~l~~~F~~~D~d~~G~i~~~el~~   65 (109)
T 5pal_A           19 KDPGTFDYKRFFHLVG--LK---GKTDAQVKEVFEILDKDQSGFIEEEELKG   65 (109)
T ss_dssp             CSTTCCCHHHHHHHHT--CT---TCCHHHHHHHHHHHCTTCSSEECHHHHHT
T ss_pred             CCCCcCcHHHHHHHHh--hc---cCcHHHHHHHHHHHCCCCCCcCcHHHHHH
Confidence            4478899989887542  22   22345567789999999999999999764

>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB: 1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S 3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A

Probab=88.29  E-value=0.59  Score=38.28  Aligned_cols=46  Identities=28%  Similarity=0.370  Sum_probs=32.2

Q ss_pred             hhcccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          291 AADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       291 ~~~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      ..|.+++|.++..||+...-         .++.+.+.|...|.|++|.|+.+|+.
T Consensus        55 ~~D~~~~g~i~~~eF~~~~~---------~~~~~~~~F~~~D~d~~G~i~~~el~  100 (173)
T 1alv_A           55 VMDSDTTGKLGFEEFKYLWN---------NIKKWQAIYKQFDVDRSGTIGSSELP  100 (173)
T ss_dssp             HHCTTCSSSBCHHHHHHHHH---------HHHHHHHHHHHHCTTCCSSBCTTTHH
T ss_pred             HHcCCCCCccCHHHHHHHHH---------HHHHHHHHHHHHCCCCCCCCCHHHHH
Confidence            34566778888888765542         23566777888888888888888764

>3akb_A Putative calcium binding protein; EF-hand, metal binding protein; 1.50A {Streptomyces coelicolor} PDB: 3aka_A

Probab=88.17  E-value=0.33  Score=39.07  Aligned_cols=57  Identities=19%  Similarity=0.228  Sum_probs=37.9

Q ss_pred             hhhcccCCCccchHHHHHHHHHHcCCCCH----HHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952          290 EAADIDEDGVVSAAEFIIYKLKEMGKISQ----EDIALVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       290 ~~~~l~~~g~v~~~e~v~~~l~~~~~~~~----~~l~~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      ...|.+++|.++..||+...........+    ...+.+.+.|...|.|++|.|+.+++.-
T Consensus        62 ~~~D~d~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~i~~~E~~~  122 (166)
T 3akb_A           62 GIADRDGDQRITREEFVTGAVKRLRDKPDRFAEMARPFLHAALGVADTDGDGAVTVADTAR  122 (166)
T ss_dssp             HHHCTTSSSCEEHHHHHHTHHHHHHHSHHHHHHHHHHHHHHHHHHHCSSSSSCCBHHHHHH
T ss_pred             HHhCCCCCCcCcHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHhCCCCCCcCCHHHHHH
Confidence            34567889999999987664433221111    1123467778888999999999888753

>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A

Probab=88.16  E-value=0.69  Score=33.05  Aligned_cols=53  Identities=23%  Similarity=0.406  Sum_probs=39.1

Q ss_pred             hhhcccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952          290 EAADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       290 ~~~~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      ...|.+++|.++..|+.. .+...|..+.++++.+   |...|.|++|.|+.++..-
T Consensus        18 ~~~D~d~~G~i~~~el~~-~l~~~g~~~~~~~~~~---~~~~D~~~dg~i~~~eF~~   70 (86)
T 2opo_A           18 KRFDTNGDGKISSSELGD-ALKTLGSVTPDEVRRM---MAEIDTDGDGFISFDEFTD   70 (86)
T ss_dssp             HHHCTTCSSEEEHHHHHH-HHHTTTTCCHHHHHHH---HHHHCTTCSSEECHHHHHH
T ss_pred             HHHCCCCCCCcCHHHHHH-HHHHcCCCCHHHHHHH---HHHhCCCCCCcCcHHHHHH
Confidence            345678999999877554 4556666777776654   5667999999999998653

>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A {Rattus norvegicus} PDB: 2e30_A

Probab=88.15  E-value=0.4  Score=40.77  Aligned_cols=36  Identities=31%  Similarity=0.440  Sum_probs=21.2

Q ss_pred             HHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          310 LKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       310 l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      +.+....++++++++.+.|..+|.|+||.|+.+|+.
T Consensus        17 l~~~~~ls~~~~~~l~~~F~~~D~d~dG~Is~~El~   52 (208)
T 2ct9_A           17 IKKETGFSHSQITRLYSRFTSLDKGENGTLSREDFQ   52 (208)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHCTTCSSEECTGGGG
T ss_pred             HHHcCCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHH
Confidence            344445556666666666666666666666666654

>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}

Probab=88.08  E-value=0.65  Score=32.30  Aligned_cols=52  Identities=15%  Similarity=0.356  Sum_probs=37.3

Q ss_pred             hhhcccCCCccchHHHHHHHHHHcCC-CCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          290 EAADIDEDGVVSAAEFIIYKLKEMGK-ISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       290 ~~~~l~~~g~v~~~e~v~~~l~~~~~-~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      ...|.+++|.++..|+... +...|. .+.++++.   -|...|.|++|.|+.++..
T Consensus        14 ~~~D~d~~G~i~~~el~~~-l~~~g~~~~~~~~~~---~~~~~d~~~~g~i~~~eF~   66 (77)
T 2joj_A           14 DLFDTNKTGSIDYHELKVA-MRALGFDVKKPEILE---LMNEYDREGNGYIGFDDFL   66 (77)
T ss_dssp             HHHCCSSSSEEEHHHHHHH-HHHHTCCCHHHHHHH---HHHHHCCSSSSEEEHHHHH
T ss_pred             HHhCCCCCCCCcHHHHHHH-HHHhCCCCCHHHHHH---HHHHHCCCCCCcCcHHHHH
Confidence            3456789999998886654 555554 45555544   5667799999999999865

>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR {Homo sapiens} PDB: 2l4i_A 2lm5_A

Probab=88.06  E-value=0.69  Score=39.80  Aligned_cols=54  Identities=20%  Similarity=0.145  Sum_probs=40.2

Q ss_pred             hhcccCCCc-cchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952          291 AADIDEDGV-VSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       291 ~~~l~~~g~-v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      ..|.+++|. ++-.||+............  .+.+...|...|.|++|.|+.+|+.-
T Consensus        99 ~~D~d~dG~~I~f~EF~~~~~~~~~~~~~--~~~l~~~F~~~D~d~dG~Is~~El~~  153 (214)
T 2l4h_A           99 VFSTSPAKDSLSFEDFLDLLSVFSDTATP--DIKSHYAFRIFDFDDDGTLNREDLSR  153 (214)
T ss_dssp             HHCCSSSCCSEEHHHHHHHHHHTSSCSCH--HHHHHHHHHHHCTTCSSCBCHHHHHH
T ss_pred             HhCcCCCCCEecHHHHHHHHHHHcCCCCH--HHHHHHHHHHhCCCCCCcCCHHHHHH
Confidence            346788999 9999998876543332222  24567789999999999999999864

>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB: 3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A

Probab=88.02  E-value=0.8  Score=36.22  Aligned_cols=52  Identities=25%  Similarity=0.423  Sum_probs=39.4

Q ss_pred             hhhcccCCCccchHHHHHHHHHHcC-CCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          290 EAADIDEDGVVSAAEFIIYKLKEMG-KISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       290 ~~~~l~~~g~v~~~e~v~~~l~~~~-~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      ..-|.+++|.++..|+.. .+...| .++.++++.+   +.+.|.|++|.|+.++..
T Consensus        86 ~~~D~d~~G~I~~~el~~-~l~~~g~~~~~~~~~~~---~~~~D~d~dG~I~~~eF~  138 (143)
T 2obh_A           86 KLFDDDETGKISFKNLKR-VAKELGENLTDEELQEM---IDEADRDGDGEVSEQEFL  138 (143)
T ss_dssp             HHHCTTCSSSBCHHHHHH-HHHHTTCCCCHHHHHHH---HHHHCTTSSSSBCHHHHH
T ss_pred             HHhCCCCCCcCcHHHHHH-HHHHhCCCCCHHHHHHH---HHHhCCCCCCcEeHHHHH
Confidence            345778999999887654 455555 5788888776   556789999999999864

>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic, ER, golgi, transport, disulfide bond, endopla reticulum, ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A 3lcp_C

Probab=87.95  E-value=0.35  Score=38.95  Aligned_cols=55  Identities=13%  Similarity=0.256  Sum_probs=40.3

Q ss_pred             hhhcccCCCccchHHHHHHHHHHc---------CCCCHHHHHHHH-HHhhhcCCCCCCccChhhhh
Q 047952          290 EAADIDEDGVVSAAEFIIYKLKEM---------GKISQEDIALVM-EEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       290 ~~~~l~~~g~v~~~e~v~~~l~~~---------~~~~~~~l~~i~-~~f~~ld~~~~g~l~~~d~~  345 (354)
                      ..-|.+++|.++..|+.... ...         ..++.++++++. +-|.+.|.|+||.|+.+|+.
T Consensus        75 ~~~D~d~dG~I~~~El~~~l-~~~~~~~~~~~g~~~s~~e~~~~~~~~f~~~D~d~dG~Is~~EF~  139 (143)
T 3a4u_B           75 KMHDYDGNNLLDGLELSTAI-THVHKEEGSEQAPLMSEDELINIIDGVLRDDDKNNDGYIDYAEFA  139 (143)
T ss_dssp             HHTCTTCSSCEEHHHHHHTC-C-------------CCHHHHHHHHHHHHHHHCTTCSSEECHHHHH
T ss_pred             HHhCCCCCCccCHHHHHHHH-HHHHhhhccccCCCCCHHHHHHHHHHHHHHcCCCCCCcEeHHHHH
Confidence            44577899999988876542 222         357888888775 44799999999999999875

>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6

Probab=87.89  E-value=0.76  Score=33.87  Aligned_cols=51  Identities=14%  Similarity=0.291  Sum_probs=37.1

Q ss_pred             hhhcccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          290 EAADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       290 ~~~~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      ..-|.+++|.++..|.. ..+.+.| .+.++++++   +...|.|+||.|+.++..
T Consensus        16 ~~~D~d~dG~I~~~el~-~~l~~~g-~~~~~~~~i---~~~~D~d~dG~i~~~EF~   66 (92)
T 1fi6_A           16 KTIQPDLNGFIPGSAAK-EFFTKSK-LPILELSHI---WELSDFDKDGALTLDEFC   66 (92)
T ss_dssp             TTTCCSTTCEEEHHHHH-HHHHHHS-SCHHHHHHH---HHHHCTTCSSEEEHHHHH
T ss_pred             HHHCCCCCCcCcHHHHH-HHHHHcC-CCHHHHHHH---HHHHCCCCCCCCCHHHHH
Confidence            34567899999987754 3455555 677777665   556799999999999864

>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural genomics, seattle S genomics center for infectious disease, ssgcid; 1.90A {Entamoeba histolytica} PDB: 3sia_A 3sib_A

Probab=87.87  E-value=0.56  Score=40.56  Aligned_cols=44  Identities=30%  Similarity=0.374  Sum_probs=22.5

Q ss_pred             cccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          293 DIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       293 ~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      |.+++|.++..||+.....         ++.+.+.|...|.|++|.|+.+|+.
T Consensus        97 D~d~dg~I~~~EF~~~~~~---------~~~l~~~F~~~D~d~~G~I~~~El~  140 (220)
T 3sjs_A           97 DTDFNGHISFYEFMAMYKF---------MELAYNLFVMNARARSGTLEPHEIL  140 (220)
T ss_dssp             CTTCSSCBCHHHHHHHHHH---------HHHHHHHHHHHCCSSTTEECHHHHH
T ss_pred             CCCCCCcCCHHHHHHHHHH---------HHHHHHHHHHHCCCCCCCCcHHHHH
Confidence            3445555555555543321         2344455555566666666555543

>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6

Probab=87.79  E-value=0.69  Score=34.37  Aligned_cols=51  Identities=25%  Similarity=0.289  Sum_probs=37.3

Q ss_pred             hhhcccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          290 EAADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       290 ~~~~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      ..-|.+++|.++..|.. ..+.+.| .+.++++++   +...|.|+||.|+.++..
T Consensus        17 ~~~D~d~dG~I~~~el~-~~l~~~g-~~~~~~~~i---~~~~D~d~dG~i~~~EF~   67 (95)
T 1c07_A           17 LKTDKDMDGFVSGLEVR-EIFLKTG-LPSTLLAHI---WSLCDTKDCGKLSKDQFA   67 (95)
T ss_dssp             HHHCTTCSSEECHHHHH-HHHHTTT-CCHHHHHHH---HHHHCTTCSSSEETTTHH
T ss_pred             HHhCCCCCCcEeHHHHH-HHHHHcC-CCHHHHHHH---HHHHCCCCCCcCCHHHHH
Confidence            34567899999987754 4455555 677777665   556799999999999964

>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell junction, cell projection, coiled coil, endocytosis, membrane, phosphoprotein; NMR {Homo sapiens}

Probab=87.73  E-value=0.33  Score=37.48  Aligned_cols=30  Identities=20%  Similarity=0.150  Sum_probs=20.2

Q ss_pred             CCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          316 ISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       316 ~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      +++++.+++.+.|..+|.|+||.|+.+|+.
T Consensus         8 ls~~~~~~l~~~F~~~D~d~dG~I~~~El~   37 (111)
T 2kgr_A            8 VPQSSRLKYRQLFNSHDKTMSGHLTGPQAR   37 (111)
T ss_dssp             SCHHHHHHHHHHHHTTSCSSCCEEEHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCcCcHHHHH
Confidence            455666666677777777777777776654

>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora erythraea} SCOP: a.39.1.5

Probab=87.71  E-value=0.71  Score=37.44  Aligned_cols=56  Identities=14%  Similarity=0.253  Sum_probs=42.7

Q ss_pred             hhcccCCCccchHHHHHH---HHHHcC-CCCHHHHHHHH--------HHhhhcCCCCCCccChhhhhh
Q 047952          291 AADIDEDGVVSAAEFIIY---KLKEMG-KISQEDIALVM--------EEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       291 ~~~l~~~g~v~~~e~v~~---~l~~~~-~~~~~~l~~i~--------~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      ..|.+++|.++..|+...   .+...| ..+.+++.++.        +-|...|.|++|.|+.+|+.-
T Consensus        15 ~~D~d~~G~i~~~el~~~~~~~l~~~g~~~~~~~~~~l~~~~~~~~~~lf~~~D~d~dg~i~~~Ef~~   82 (176)
T 1nya_A           15 RWDFDGNGALERADFEKEAQHIAEAFGKDAGAAEVQTLKNAFGGLFDYLAKEAGVGSDGSLTEEQFIR   82 (176)
T ss_dssp             HCCSSCCSSBCSHHHHHHHHHHHHHTSSCSSSHHHHHHHHHHHHHHHHHHHHHTSCTTCCBCHHHHHH
T ss_pred             HHcCCCCCcccHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCCCeEcHHHHHH
Confidence            456789999999988764   455555 45667776554        678899999999999999753

>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate cyclase activating protein, GCAP1, GCAP-1, calcium, lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}

Probab=87.67  E-value=0.51  Score=39.60  Aligned_cols=53  Identities=17%  Similarity=0.243  Sum_probs=39.0

Q ss_pred             hhcccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952          291 AADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       291 ~~~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      ..|.+++|.++..||+...-........+   .+...|...|.|++|.|+.+|+.-
T Consensus        60 ~~D~d~~G~I~~~Ef~~~~~~~~~~~~~~---~~~~~F~~~D~d~~G~I~~~Ef~~  112 (198)
T 2r2i_A           60 TFDFNKDGYIDFMEYVAALSLVLKGKVDQ---KLRWYFKLYDVDGNGCIDRGELLN  112 (198)
T ss_dssp             HHCTTCSSCEEHHHHHHHHHHHSSCCHHH---HHHHHHHHHCTTCSSCEEHHHHHH
T ss_pred             HHCCCCCCeEcHHHHHHHHHHHccCchHH---HHHHHHHHhcCCCCCcCcHHHHHH
Confidence            45678999999999987654433333333   455678999999999999999753

>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A

Probab=87.59  E-value=0.66  Score=37.08  Aligned_cols=55  Identities=27%  Similarity=0.395  Sum_probs=41.2

Q ss_pred             hhhcccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952          290 EAADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       290 ~~~~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      ...|.+++|.++..||+............+  +.+.+.|...|.|++|.|+.+++.-
T Consensus        53 ~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~--~~l~~aF~~~D~d~~G~I~~~El~~  107 (148)
T 2lmt_A           53 AEAENNNNGQLNFTEFCGIMAKQMRETDTE--EEMREAFKIFDRDGDGFISPAELRF  107 (148)
T ss_dssp             HHHHTTSTTEEEHHHHHHHHHHTTTTTTTH--HHHHHHHHHHHSSCSSEECHHHHHH
T ss_pred             HhcccCCCCcccHHHHHHHHHHHhcccCcH--HHHHHHHHHHCCCCcCcCcHHHHHH
Confidence            345678889999999988776655543322  2456789999999999999999763

>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A

Probab=87.58  E-value=0.29  Score=35.24  Aligned_cols=32  Identities=19%  Similarity=0.176  Sum_probs=28.0

Q ss_pred             CCCHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952          315 KISQEDIALVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       315 ~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      .+++++++++.+.|...|.|++|.|+.+|+.-
T Consensus         7 ~l~~~~~~~l~~~F~~~D~d~~G~I~~~el~~   38 (86)
T 1j7q_A            7 ALGPEEKDECMKIFDIFDRNAENIAPVSDTMD   38 (86)
T ss_dssp             CCSSTHHHHHHHHHHHHSTTTTSCBCHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHH
Confidence            35677888999999999999999999999864

>3akb_A Putative calcium binding protein; EF-hand, metal binding protein; 1.50A {Streptomyces coelicolor} PDB: 3aka_A

Probab=87.54  E-value=1.1  Score=35.70  Aligned_cols=52  Identities=25%  Similarity=0.373  Sum_probs=39.8

Q ss_pred             hhhcccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952          290 EAADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       290 ~~~~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      ...|.+++|.++..|+... +...| ++.++++.+   |...|.|+||.|+.+++.-
T Consensus       105 ~~~D~d~~G~i~~~E~~~~-l~~~~-~~~~~~~~~---~~~~D~d~dg~i~~~ef~~  156 (166)
T 3akb_A          105 GVADTDGDGAVTVADTARA-LTAFG-VPEDLARQA---AAALDTDGDGKVGETEIVP  156 (166)
T ss_dssp             HHHCSSSSSCCBHHHHHHH-HHHTT-CCHHHHHHH---HHHHCTTCSSBCCHHHHHH
T ss_pred             HHhCCCCCCcCCHHHHHHH-HHHhC-CCHHHHHHH---HHHhCCCCCCcCcHHHHHH
Confidence            4557789999999887544 56667 888777665   5567899999999998753

>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}

Probab=87.51  E-value=0.37  Score=40.24  Aligned_cols=51  Identities=22%  Similarity=0.404  Sum_probs=24.3

Q ss_pred             cccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          293 DIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       293 ~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      +.+++|.+.-.||+.......  ......+.+.+.|...|.|++|.|+.+|+.
T Consensus        57 d~d~~~~i~~~ef~~~~~~~~--~~~~~~~~l~~aF~~fD~d~~G~I~~~el~  107 (176)
T 2lhi_A           57 DVDGNHQIEFSEFLALMSRQL--KSNDSEQELLEAFKVFDKNGDGLISAAELK  107 (176)
T ss_dssp             CSSCSSSBCTTHHHHHHTSSC--CSSHHHHHHHHHHHHHCSSCSSSBCHHHHH
T ss_pred             CcCCCccchHHHHHHHHHHhc--ccCCcHHHHHHHHHHhCCCCCCcCcHHHHH
Confidence            344555555555544332111  111222344555666666666666666653

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=87.49  E-value=0.31  Score=47.50  Aligned_cols=54  Identities=30%  Similarity=0.449  Sum_probs=40.3

Q ss_pred             hhhcccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952          290 EAADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       290 ~~~~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      ...|.+++|.++..||+............++   +.+.|...|.|+||.|+.+|+.-
T Consensus       388 ~~~D~d~dG~I~~~Ef~~~~~~~~~~~~~~~---~~~~F~~~D~d~dG~Is~~El~~  441 (486)
T 3mwu_A          388 PLLDMDGSGSIEYSEFIASAIDRTILLSRER---MERAFKMFDKDGSGKISTKELFK  441 (486)
T ss_dssp             HHHCTTCCSSBCHHHHHHHHSCTTTTCCHHH---HHHHHHHHCSSCSSSBCSSCC--
T ss_pred             HHhcCCCCCcCcHHHHHHHHHhhhccchHHH---HHHHHHHhCCCCCCcCCHHHHHH
Confidence            3456789999999999887655555555544   45678889999999999999754

>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light chain, cell cycle protein; 1.65A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A 2fce_A

Probab=87.48  E-value=0.11  Score=41.25  Aligned_cols=51  Identities=16%  Similarity=0.182  Sum_probs=36.3

Q ss_pred             cccCCCccchHHHHHHHHHH------cCCCCHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952          293 DIDEDGVVSAAEFIIYKLKE------MGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       293 ~l~~~g~v~~~e~v~~~l~~------~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      |.+++|.++..||+......      ......   +.+...|..+|.|++|.|+.+++.-
T Consensus        51 D~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~---~~~~~~F~~~D~d~~G~I~~~el~~  107 (148)
T 1m45_A           51 SLRDASSLTLDQITGLIEVNEKELDATTKAKT---EDFVKAFQVFDKESTGKVSVGDLRY  107 (148)
T ss_dssp             CC--CCEEEHHHHHHHHHHTHHHHHGGGCCCT---HHHHHHHHTTCSSSSSEEEHHHHHH
T ss_pred             CCCCCCeEcHHHHHHHHHHHHhhccccccccH---HHHHHHHHHhCCCCCCcCCHHHHHH
Confidence            67889999999998776544      222222   3456679999999999999999754

>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR {Homo sapiens} PDB: 2l4i_A 2lm5_A

Probab=87.44  E-value=0.51  Score=40.66  Aligned_cols=55  Identities=18%  Similarity=0.428  Sum_probs=41.3

Q ss_pred             hhhcccCCCccchHHHHHHHHHHcC------CCCHHHHHHHH-HHhhhcCCCCCCccChhhhh
Q 047952          290 EAADIDEDGVVSAAEFIIYKLKEMG------KISQEDIALVM-EEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       290 ~~~~l~~~g~v~~~e~v~~~l~~~~------~~~~~~l~~i~-~~f~~ld~~~~g~l~~~d~~  345 (354)
                      ..-|.+++|.++..|+... +...+      .+++++++.+. +-|.+.|.|+||.|+.+|+.
T Consensus       136 ~~~D~d~dG~Is~~El~~~-l~~~~~~~~~~~~s~~e~~~~~~~~~~~~D~d~dG~Is~~EF~  197 (214)
T 2l4h_A          136 RIFDFDDDGTLNREDLSRL-VNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLSEFQ  197 (214)
T ss_dssp             HHHCTTCSSCBCHHHHHHH-HHHHHHSSSCTTCSCTHHHHHHHHHHHHHCCSCCSSBCSHHHH
T ss_pred             HHhCCCCCCcCCHHHHHHH-HHHHhccccCCCCCHHHHHHHHHHHHHHhCCCCCCcCCHHHHH
Confidence            3457889999998887654 33332      57778887654 45889999999999999975

>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand, calcium-binding protein, guanylyl cyclase regulation, lyase; NMR {Bos taurus} SCOP: a.39.1.5

Probab=87.38  E-value=0.68  Score=39.01  Aligned_cols=53  Identities=17%  Similarity=0.214  Sum_probs=39.4

Q ss_pred             hhcccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952          291 AADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       291 ~~~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      ..|.+++|.++..||+...-........++   +...|...|.|++|.|+.+|+.-
T Consensus        67 ~~D~d~~G~i~~~Ef~~~~~~~~~~~~~~~---~~~~F~~~D~d~~G~I~~~E~~~  119 (204)
T 1jba_A           67 AFDTNGDNTIDFLEYVAALNLVLRGTLEHK---LKWTFKIYDKDRNGCIDRQELLD  119 (204)
T ss_dssp             HHCCSSSSEECHHHHHHHHHHHSSCCCTHH---HHHHHHHHCSSCSSCBCHHHHHH
T ss_pred             HHcCCCCCeEeHHHHHHHHHHHccCCHHHH---HHHHHHHhCCCCCCcCcHHHHHH
Confidence            446788999999998887654443444444   45678888999999999999753

>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A

Probab=87.35  E-value=1.3  Score=34.71  Aligned_cols=53  Identities=19%  Similarity=0.313  Sum_probs=39.3

Q ss_pred             hhhcccCCCccchHHHHHHHHH-HcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          290 EAADIDEDGVVSAAEFIIYKLK-EMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       290 ~~~~l~~~g~v~~~e~v~~~l~-~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      ...|.+++|.++..|+....-. ....++.++++.+   |...|.|++|.|+.+|..
T Consensus        95 ~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~---~~~~d~~~dg~i~~~eF~  148 (153)
T 3ox6_A           95 REFDTNGDGEISTSELREAMRALLGHQVGHRDIEEI---IRDVDLNGDGRVDFEEFV  148 (153)
T ss_dssp             HHHCTTCSSSBCHHHHHHHHHHHHSSCCCHHHHHHH---HHHHCSSSSSSBCHHHHH
T ss_pred             HHhCCCCCCcCcHHHHHHHHHHHhcCCCCHHHHHHH---HHHhCCCCCCeEeHHHHH
Confidence            3456789999999887665444 3345788887765   555689999999999865

>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand, helix-loop-helix, calcium-binding, calmodulin superfamily, transferase, plant protein; NMR {Glycine max} SCOP: a.39.1.5

Probab=87.33  E-value=0.98  Score=32.24  Aligned_cols=52  Identities=25%  Similarity=0.444  Sum_probs=38.0

Q ss_pred             hhhcccCCCccchHHHHHHHHHHcC-CCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          290 EAADIDEDGVVSAAEFIIYKLKEMG-KISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       290 ~~~~l~~~g~v~~~e~v~~~l~~~~-~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      ...|.+++|.++..|+... +...| ..++++++.+   |...|.|++|.|+.++..
T Consensus        30 ~~~D~d~~G~i~~~el~~~-l~~~~~~~~~~~~~~l---~~~~d~~~~g~i~~~eF~   82 (87)
T 1s6j_A           30 KMIDTDNSGTITFDELKDG-LKRVGSELMESEIKDL---MDAADIDKSGTIDYGEFI   82 (87)
T ss_dssp             HHHCTTCSSCEEHHHHHHH-HHTTTSSCCHHHHHHH---HHHHCTTCSSEECHHHHT
T ss_pred             HHHCCCCCCcCcHHHHHHH-HHHhCCCCCHHHHHHH---HHHhCCCCCCcCcHHHHH
Confidence            3446678999998876544 55555 5677777664   566789999999998864

>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase activating protein, GCAP, GCAP3, GCAP-3, lyase activator; 3.00A {Homo sapiens}

Probab=87.31  E-value=0.61  Score=39.76  Aligned_cols=53  Identities=25%  Similarity=0.262  Sum_probs=39.4

Q ss_pred             hhcccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952          291 AADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       291 ~~~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      ..|.+++|.++..||+...-........   +.+...|..+|.|++|.|+.+|+.-
T Consensus        65 ~~D~d~dG~I~~~Ef~~~~~~~~~~~~~---~~l~~~F~~~D~d~~G~I~~~E~~~  117 (211)
T 2ggz_A           65 TFDTNKDGFVDFLEFIAAVNLIMQEKME---QKLKWYFKLYDADGNGSIDKNELLD  117 (211)
T ss_dssp             HHCTTCSSEEEHHHHHHHHHHHSCSSHH---HHHHHHHHHHCTTCSSSBCHHHHHH
T ss_pred             HHcCCCCCeEeHHHHHHHHHHhccCchH---HHHHHHHHHhcCCCCCcCcHHHHHH
Confidence            4467899999999998775443333323   3456679999999999999999753

>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A

Probab=87.27  E-value=0.95  Score=32.70  Aligned_cols=51  Identities=24%  Similarity=0.444  Sum_probs=37.6

Q ss_pred             hhcccCCCccchHHHHHHHHHHcC-CCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          291 AADIDEDGVVSAAEFIIYKLKEMG-KISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       291 ~~~l~~~g~v~~~e~v~~~l~~~~-~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      .-|.+++|.++..|+... +...| ..+.++++.+   |...|.|++|.|+.++..
T Consensus        28 ~~D~d~~G~i~~~el~~~-l~~~g~~~~~~~~~~l---~~~~D~~~dg~i~~~eF~   79 (90)
T 1avs_A           28 MFDADGGGDISTKELGTV-MRMLGQNPTKEELDAI---IEEVDEDGSGTIDFEEFL   79 (90)
T ss_dssp             HHCTTCSSEECHHHHHHH-HHHTTCCCCHHHHHHH---HHHHCTTCCSSEEHHHHH
T ss_pred             HHCCCCCCcCcHHHHHHH-HHHhCCCCCHHHHHHH---HHHhCCCCCCeEeHHHHH
Confidence            446789999998776544 55555 4677777665   566789999999999864

>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A

Probab=87.18  E-value=0.39  Score=34.91  Aligned_cols=31  Identities=32%  Similarity=0.378  Sum_probs=28.1

Q ss_pred             CCHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952          316 ISQEDIALVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       316 ~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      +++++++.+.+.|...|.|++|.|+.+|+..
T Consensus        14 l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~   44 (90)
T 1avs_A           14 LSEEMIAEFKAAFDMFDADGGGDISTKELGT   44 (90)
T ss_dssp             BCHHHHHHHHHHHHHHCTTCSSEECHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCcCcHHHHHH
Confidence            6788899999999999999999999999764

>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP: a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A 1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A 2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...

Probab=87.10  E-value=0.41  Score=38.32  Aligned_cols=51  Identities=24%  Similarity=0.438  Sum_probs=26.0

Q ss_pred             hhcccCCCccchHHHHHHHHHHcC-CCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          291 AADIDEDGVVSAAEFIIYKLKEMG-KISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       291 ~~~l~~~g~v~~~e~v~~~l~~~~-~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      ..|.+++|.++..|+... +...| .++.++++.+   |...|.|++|.|+.+|+.
T Consensus       104 ~~D~d~~G~I~~~e~~~~-l~~~g~~~~~~~~~~~---~~~~d~~~dg~i~~~eF~  155 (162)
T 1top_A          104 IFDKNADGFIDIEELGEI-LRATGEHVTEEDIEDL---MKDSDKNNDGRIDFDEFL  155 (162)
T ss_dssp             HHCTTCSSCBCHHHHHHH-HHTTTCCCCHHHHHHH---HHHHCTTCSSSBCHHHHH
T ss_pred             HhCCCCCCcCcHHHHHHH-HHHhCCCCCHHHHHHH---HHHhCCCCCCcCcHHHHH
Confidence            334456666666555443 33333 3455554443   344455666666666543

>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria, structural genomics consortium, SGC, transfe; 2.10A {Plasmodium falciparum}

Probab=87.04  E-value=0.28  Score=40.80  Aligned_cols=52  Identities=27%  Similarity=0.464  Sum_probs=37.6

Q ss_pred             hhcccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952          291 AADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       291 ~~~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      ..|.+++|.++..||+..... ......   +.+.+.|..+|.|++|.|+.+|+.-
T Consensus        81 ~~D~d~~g~i~~~Ef~~~~~~-~~~~~~---~~~~~~F~~~D~d~~G~I~~~El~~  132 (180)
T 3mse_B           81 ALDINDRGNITYTEFMAGCYR-WKNIES---TFLKAAFNKIDKDEDGYISKSDIVS  132 (180)
T ss_dssp             HHCTTCCSEECHHHHHHHHSC-CTTC-----CHHHHHHHHHCTTCSSCBCHHHHHH
T ss_pred             HhCCCCCCcCcHHHHHHHHHh-cccCCH---HHHHHHHHHHCCCCCCCCCHHHHHH
Confidence            446788999999999865432 222222   4567789999999999999999764

>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A

Probab=87.01  E-value=0.95  Score=34.68  Aligned_cols=49  Identities=16%  Similarity=0.228  Sum_probs=36.0

Q ss_pred             hcccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952          292 ADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       292 ~~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      .|. ++|.++..|. ...+.+.| ++.++++++   ++..|.|+||.|+.++...
T Consensus        24 ~D~-~dG~Is~~el-~~~l~~~g-l~~~el~~i---~~~~D~d~dG~id~~EF~~   72 (106)
T 1eh2_A           24 LSP-VNGFLSGDKV-KPVLLNSK-LPVDILGRV---WELSDIDHDGMLDRDEFAV   72 (106)
T ss_dssp             SCC-SSSCCBHHHH-HHHHHTTT-CCHHHHHHH---HHHHCSSCSSBCCHHHHHH
T ss_pred             hCC-CCCeEcHHHH-HHHHHHcC-CCHHHHHHH---HHHHcCCCCCcCcHHHHHH
Confidence            345 8899998664 44455555 778877775   5568999999999999643

>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium binding protein, apoptosis, calcium, endoplasmic reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB: 2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A

Probab=87.00  E-value=0.66  Score=37.85  Aligned_cols=44  Identities=25%  Similarity=0.224  Sum_probs=25.0

Q ss_pred             cccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          293 DIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       293 ~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      |.+++|.++..||+...-         .++.+.+.|...|.|++|.|+.+|+.
T Consensus        54 D~~~~g~i~~~ef~~~~~---------~~~~~~~~F~~~D~d~~G~i~~~el~   97 (172)
T 2znd_A           54 DRENKAGVNFSEFTGVWK---------YITDWQNVFRTYDRDNSGMIDKNELK   97 (172)
T ss_dssp             CSSSSSEECHHHHHHHHH---------HHHHHHHHHHHHCTTCSSEECHHHHH
T ss_pred             CCCCCCcCCHHHHHHHHH---------HHHHHHHHHHHHCCCCCCccCHHHHH
Confidence            445666666666655421         12445555666666666666666654

>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases, like, EF-hand, structural genomics, structural genomics CON SGC, hydrolase; 1.80A {Homo sapiens}

Probab=86.90  E-value=0.52  Score=39.39  Aligned_cols=46  Identities=22%  Similarity=0.326  Sum_probs=36.5

Q ss_pred             hhcccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952          291 AADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       291 ~~~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      ..|.+++|.++-.||+...-         .+..+.+.|...| |++|.|+.+|+.-
T Consensus        54 ~~D~d~~G~I~f~EF~~~~~---------~~~~l~~aF~~fD-d~~G~I~~~El~~   99 (174)
T 2i7a_A           54 LMELKVNGRLDQEEFARLWK---------RLVHYQHVFQKVQ-TSPGVLLSSDLWK   99 (174)
T ss_dssp             HHCSSCSSEECHHHHHHHHH---------HHHHHHHHHHHHC-SBTTBEEGGGHHH
T ss_pred             HHCCCCCCcCCHHHHHHHHH---------HHHHHHHHHHHhc-CCCCcCCHHHHHH
Confidence            45677899999999986532         2356788899999 9999999999864

>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}

Probab=86.86  E-value=0.35  Score=46.68  Aligned_cols=53  Identities=28%  Similarity=0.462  Sum_probs=31.2

Q ss_pred             hhcccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          291 AADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       291 ~~~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      ..|.+++|.|+-.||+..........  ...+.+.+.|+.+|.|++|.|+.+|+.
T Consensus       346 ~~D~DgDG~IdFeEFl~lms~~lk~~--d~eeeLreAFk~fDkDgdG~IS~eELr  398 (440)
T 3u0k_A          346 EVDADGDGTIDFPEFLIMMARKMKDT--DSEEEIREAFRVFDKDGNGYISAAELR  398 (440)
T ss_dssp             HHCSSCSSSEEHHHHHHHHHTC--------CHHHHHHHHHHCTTCSSEECHHHHH
T ss_pred             HhCCCCCCcCcHHHHHHHHHHHhcCC--ChHHHHHHHHHHHCCCCcCcCCHHHHH
Confidence            34566777788777765543222211  122345566777788888888887764

>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max}

Probab=86.86  E-value=0.37  Score=35.09  Aligned_cols=28  Identities=32%  Similarity=0.405  Sum_probs=14.8

Q ss_pred             HHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          318 QEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       318 ~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      ++..+.+.+.|..+|.|++|.|+.+|+.
T Consensus         5 ~~~~~~l~~~F~~~D~d~~G~i~~~el~   32 (92)
T 2kn2_A            5 TDAEEELKEAFKVFDKDQNGYISASELR   32 (92)
T ss_dssp             CHHHHHHHHHHHHHCTTCSSEECHHHHH
T ss_pred             ccHHHHHHHHHHHHCCCCCCeEcHHHHH
Confidence            3444455555555555555555555543

>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} SCOP: a.39.1.6

Probab=86.84  E-value=0.93  Score=34.09  Aligned_cols=51  Identities=24%  Similarity=0.334  Sum_probs=37.1

Q ss_pred             hhhcccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          290 EAADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       290 ~~~~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      ...|.+++|.|+..|... .+.+.+ ++.++++++   +...|.|++|.|+.++..
T Consensus        18 ~~~D~d~dG~Is~~el~~-~l~~~~-l~~~~l~~i---~~~~D~d~dG~i~~~EF~   68 (99)
T 1qjt_A           18 RQVEAGNTGRVLALDAAA-FLKKSG-LPDLILGKI---WDLADTDGKGVLSKQEFF   68 (99)
T ss_dssp             HHHCCTTSSCCCSHHHHH-HHHTSS-SCHHHHHHH---HHHHCCSSSSSCCSHHHH
T ss_pred             HHHCCCCCCcCCHHHHHH-HHHHcC-CCHHHHHHH---HHHHCCCCCCcCCHHHHH
Confidence            345678999999876543 355555 677777665   556799999999999954

>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E

Probab=86.81  E-value=0.5  Score=38.96  Aligned_cols=54  Identities=15%  Similarity=0.206  Sum_probs=39.5

Q ss_pred             hhhcccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952          290 EAADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       290 ~~~~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      ...|.+++|.++..||+...-........   +.+...|...|.|++|.|+.+|+.-
T Consensus        63 ~~~D~d~~g~i~~~Ef~~~~~~~~~~~~~---~~~~~~f~~~D~d~~G~i~~~e~~~  116 (183)
T 1s6c_A           63 NAFDTTQTGSVKFEDFVTALSILLRGTVH---EKLRWTFNLYDINKDGYINKEEMMD  116 (183)
T ss_dssp             HHHCTTCSSCEEHHHHHHHHHHHHHCCHH---HHHHHHHHHHCTTCSSCEEHHHHHH
T ss_pred             HHhCCCCCCcEeHHHHHHHHHHHcCCCHH---HHHHHHHHHhCCCCCCeEcHHHHHH
Confidence            34567899999999988775443333333   3456678999999999999999753

>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 2lhh_A 1f54_A 1f55_A

Probab=86.73  E-value=0.86  Score=35.59  Aligned_cols=52  Identities=23%  Similarity=0.325  Sum_probs=38.6

Q ss_pred             hhhcccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          290 EAADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       290 ~~~~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      ...|.+++|.++..|+....-.-...+++++++.+.+.+   | |++|.|+.+|..
T Consensus        91 ~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~---d-~~dg~i~~~eF~  142 (147)
T 4ds7_A           91 KVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDEMLREV---S-DGSGEINIKQFA  142 (147)
T ss_dssp             HHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHHH---S-SSCSSEEHHHHH
T ss_pred             HHhCCCCCCeECHHHHHHHHHHcCCCCCHHHHHHHHHHh---c-CCCCcCcHHHHH
Confidence            445778999999988776644333467888887766555   7 999999999865

>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell junction, cell projection, coiled coil, endocytosis, membrane, phosphoprotein; NMR {Homo sapiens}

Probab=86.71  E-value=0.74  Score=35.44  Aligned_cols=50  Identities=18%  Similarity=0.302  Sum_probs=37.0

Q ss_pred             hhcccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          291 AADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       291 ~~~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      ..|.+++|.++..|+.... . ....+.++++.+   +...|.|+||.|+.++..
T Consensus        22 ~~D~d~dG~I~~~El~~~l-~-~~~~~~~~~~~i---~~~~D~d~dG~I~~~EF~   71 (111)
T 2kgr_A           22 SHDKTMSGHLTGPQARTIL-M-QSSLPQAQLASI---WNLSDIDQDGKLTAEEFI   71 (111)
T ss_dssp             TTSCSSCCEEEHHHHHHHH-H-TTCCCHHHHHHH---HHHHCSSCCSEEEHHHHH
T ss_pred             HHCCCCCCcCcHHHHHHHH-H-hCCCCHHHHHHH---HHHHCCCCCCCCcHHHHH
Confidence            4466889999987765543 3 445777777665   566799999999999854

>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein, EF-finger, transport protein; 2.30A {Homo sapiens} SCOP: a.39.1.5

Probab=86.70  E-value=0.61  Score=40.43  Aligned_cols=54  Identities=17%  Similarity=0.228  Sum_probs=39.5

Q ss_pred             hhhcccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952          290 EAADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       290 ~~~~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      ...|.+++|.++..||+...-........+   .+...|...|.|++|.|+.+|+.-
T Consensus        96 ~~~D~d~~G~I~~~Ef~~~l~~~~~~~~~~---~l~~~F~~~D~d~dG~Is~~E~~~  149 (224)
T 1s1e_A           96 NAFDTTQTGSVKFEDFVTALSILLRGTVHE---KLRWTFNLYDINKDGYINKEEMMD  149 (224)
T ss_dssp             HHHCTTCSSCBCHHHHHHHHHHHHHCCHHH---HHHHHHHHHCTTCCSEECHHHHHH
T ss_pred             HHhcCCCCCcEeHHHHHHHHHHHccCCHHH---HHHHHHHHHcCCCCCeECHHHHHH
Confidence            345678999999999987754433333333   455678899999999999999753

>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B

Probab=86.64  E-value=0.28  Score=40.05  Aligned_cols=51  Identities=14%  Similarity=0.111  Sum_probs=30.1

Q ss_pred             ccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952          294 IDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       294 l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      .++++.++-.+|+............  -+.+.+.|...|.|++|.|+.+++.-
T Consensus        59 ~~~~~~i~f~ef~~~~~~~~~~~~~--~~~l~~aF~~fD~d~~G~I~~~el~~  109 (153)
T 3i5g_B           59 KECPGQLNFTAFLTLFGEKVSGTDP--EDALRNAFSMFDEDGQGFIPEDYLKD  109 (153)
T ss_dssp             HTSSSCCCSHHHHHTTTTTTTTCCC--HHHHHHHHHTTCSSCSSCCCHHHHHH
T ss_pred             HhccCCccHHHHHHHHHhhhccccc--HHHHHHHHhccccCCCCeEeHHHHHH
Confidence            3445555555555544333322221  23456778888888888888888753

>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein; 1.90A {Homo sapiens}

Probab=86.41  E-value=1.2  Score=33.40  Aligned_cols=52  Identities=13%  Similarity=0.266  Sum_probs=38.3

Q ss_pred             hhcccCCCccchHHHHHHHHHHcC-CCCHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952          291 AADIDEDGVVSAAEFIIYKLKEMG-KISQEDIALVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       291 ~~~l~~~g~v~~~e~v~~~l~~~~-~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      .-|.+++|.++..|+.. .+...| ..+.++++.+   +...|.|++|.++.++..-
T Consensus        40 ~~D~d~~G~I~~~el~~-~l~~~g~~~~~~~~~~l---~~~~D~d~dg~i~~~eF~~   92 (107)
T 2d58_A           40 EFDLNGNGDIDIMSLKR-MLEKLGVPKTHLELKKL---IGEVSSGSGETFSYPDFLR   92 (107)
T ss_dssp             TSCCCTTSCEEHHHHHH-HHHHTTCCCCHHHHHHH---HHHHCSSSSSEECHHHHHH
T ss_pred             HHCCCCCCcCcHHHHHH-HHHHhCCCCCHHHHHHH---HHHhCCCCCCeEcHHHHHH
Confidence            44678999999888664 455655 4677777665   5566899999999998753

>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand, helix-loop-helix, calcium-binding, calmodulin superfamily, transferase, plant protein; NMR {Glycine max} SCOP: a.39.1.5

Probab=86.40  E-value=0.082  Score=38.26  Aligned_cols=46  Identities=26%  Similarity=0.374  Sum_probs=33.3

Q ss_pred             CCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952          296 EDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       296 ~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      ++|.++..|++.     ...+++++++++.+.|...|.|++|.|+.+|+.-
T Consensus         2 ~~G~i~~~e~~~-----~~~l~~~~~~~~~~~F~~~D~d~~G~i~~~el~~   47 (87)
T 1s6j_A            2 SSGHIDDDDKHM-----AERLSEEEIGGLKELFKMIDTDNSGTITFDELKD   47 (87)
T ss_dssp             CSSSSSSHHHHS-----SSSSCSSSTTTTTTHHHHHCTTCSSCEEHHHHHH
T ss_pred             CCCccCccHHHH-----HHHCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHH
Confidence            456666666222     2345556667788899999999999999999764

>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein, solution structure, backbone dynamic, structural genomics; NMR {Homo sapiens}

Probab=86.39  E-value=0.54  Score=32.08  Aligned_cols=51  Identities=25%  Similarity=0.446  Sum_probs=36.8

Q ss_pred             hhcccCCCccchHHHHHHHHHHcC-CCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          291 AADIDEDGVVSAAEFIIYKLKEMG-KISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       291 ~~~l~~~g~v~~~e~v~~~l~~~~-~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      ..|.+++|.++..|+.. .+...| ..+.++++.   -|...|.|++|.|+.++..
T Consensus        14 ~~D~d~~G~i~~~el~~-~l~~~~~~~~~~~~~~---~~~~~d~~~~g~i~~~eF~   65 (71)
T 2b1u_A           14 AFDQDGDGHITVDELRR-AMAGLGQPLPQEELDA---MIREADVDQDGRVNYEEFA   65 (71)
T ss_dssp             TSCCSSSSEEEHHHHHH-HGGGTTCSSCHHHHHH---HHHHCCSSSSSEEETTHHH
T ss_pred             HHCCCCCCcCcHHHHHH-HHHHhCCCCCHHHHHH---HHHHhCCCCCCcCcHHHHH
Confidence            44678899999877654 345555 466766655   4667789999999998864

>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus}

Probab=86.37  E-value=0.81  Score=35.78  Aligned_cols=48  Identities=15%  Similarity=0.209  Sum_probs=23.4

Q ss_pred             CCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          296 EDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       296 ~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      ++|.++-.||+...........  ..+.+...|..+|.|++|.|+.+|+.
T Consensus        52 ~~g~i~~~eF~~~~~~~~~~~~--~~~~l~~~F~~~D~d~~G~I~~~El~   99 (143)
T 3j04_B           52 APGPINFTMFLTMFGEKLNGTD--PEDVIRNAFACFDEEASGFIHEDHLR   99 (143)
T ss_dssp             SSSCCCHHHHHHHHHHTTTSSC--CHHHHHHHHTTSCSSSCCCCCTTTHH
T ss_pred             CCCCcCHHHHHHHHHHHhccCC--cHHHHHHHHHHHCCCCCCeEcHHHHH
Confidence            4555555555554433222111  11233445666666666666666654

>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal specific guanylate cyclase activator; 2.40A {Bos taurus} SCOP: a.39.1.5

Probab=86.32  E-value=0.64  Score=38.58  Aligned_cols=52  Identities=23%  Similarity=0.315  Sum_probs=38.6

Q ss_pred             hhcccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          291 AADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       291 ~~~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      ..|.+++|.++..||....-........+   .+...|..+|.|++|.|+.+++.
T Consensus        71 ~~D~d~~g~i~~~Ef~~~~~~~~~~~~~~---~~~~~f~~~D~d~~G~I~~~E~~  122 (193)
T 1bjf_A           71 TFDANGDGTIDFREFIIALSVTSRGKLEQ---KLKWAFSMYDLDGNGYISKAEML  122 (193)
T ss_dssp             HHCSSCSSEEEHHHHHHHHHHHTSSCHHH---HHHHHHHHHCTTCSSCEEHHHHH
T ss_pred             HhCCCCCCcCcHHHHHHHHHHHcCCCHHH---HHHHHHhhcCCCCCCeECHHHHH
Confidence            44678999999999887654433333333   45567889999999999999975

>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A {Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A 1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ...

Probab=86.15  E-value=1.4  Score=34.73  Aligned_cols=52  Identities=23%  Similarity=0.525  Sum_probs=39.1

Q ss_pred             hhhcccCCCccchHHHHHHHHHHcC-CCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          290 EAADIDEDGVVSAAEFIIYKLKEMG-KISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       290 ~~~~l~~~g~v~~~e~v~~~l~~~~-~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      ...|.+++|.++..|+... +...| .+++++++.+.   ...|.|++|.|+-++..
T Consensus        90 ~~~D~d~~G~I~~~el~~~-l~~~g~~~~~~~~~~~~---~~~d~d~dg~i~~~eF~  142 (148)
T 1exr_A           90 KVFDRDGNGLISAAELRHV-MTNLGEKLTDDEVDEMI---READIDGDGHINYEEFV  142 (148)
T ss_dssp             HHHSTTCSSCBCHHHHHHH-HHHTTCCCCHHHHHHHH---HHHCSSSSSSBCHHHHH
T ss_pred             HHhCCCCCCcCCHHHHHHH-HHHhCCCCCHHHHHHHH---HHhCCCCCCcEeHHHHH
Confidence            4557789999998886654 45555 57888887765   45689999999999864

>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding protein; HET: MYR; NMR {Schizosaccharomyces pombe}

Probab=86.07  E-value=0.67  Score=38.41  Aligned_cols=53  Identities=23%  Similarity=0.315  Sum_probs=38.8

Q ss_pred             hhcccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952          291 AADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       291 ~~~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      ..|.+++|.++..||....-........+++   ...|...|.|++|.|+.+|+.-
T Consensus        71 ~~D~d~~G~i~~~ef~~~~~~~~~~~~~~~~---~~~f~~~D~d~~G~i~~~e~~~  123 (190)
T 2l2e_A           71 VFDADKNGYIDFKEFICALSVTSRGELNDKL---IWAFQLYDLDNNGLISYDEMLR  123 (190)
T ss_dssp             HHCSSSTTCEEHHHHHHHHTTSSCSCSHHHH---HHHHHHHCTTSCSCBCHHHHHH
T ss_pred             HhcCCCCCeEeHHHHHHHHHHHcCCCHHHHH---HHHHhHccCCCCCcCcHHHHHH
Confidence            4567899999999988765433333444444   4568888999999999999753

>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo pealeii}

Probab=86.06  E-value=0.87  Score=37.71  Aligned_cols=52  Identities=15%  Similarity=0.240  Sum_probs=39.7

Q ss_pred             hhhcccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952          290 EAADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       290 ~~~~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      ...|.+++|.++..|+... +...| +++++++.   -|..+|.|+||.|+.+++.-
T Consensus       116 ~~~D~d~dG~I~~~E~~~~-l~~~g-~~~~~~~~---~~~~~D~d~dG~i~~~Ef~~  167 (191)
T 2ccm_A          116 DVNDTSGDNIIDKHEYSTV-YMSYG-IPKSDCDA---AFDTLSDGGKTMVTREIFAR  167 (191)
T ss_dssp             HHHCTTCSSBCCHHHHHHH-HHTTT-CCHHHHHH---HHHHHTTTTTSCCBHHHHHH
T ss_pred             HHhCCCCCCcCcHHHHHHH-HHHhC-CCHHHHHH---HHHHhCCCCCCCcCHHHHHH
Confidence            4567789999999887654 45556 77776654   56778999999999999753

>2zfd_A Calcineurin B-like protein 2; calcium binding protein, protein-protein complex, ATP-bindin kinase, nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP: a.39.1.5 PDB: 1uhn_A

Probab=86.06  E-value=0.86  Score=39.30  Aligned_cols=54  Identities=17%  Similarity=0.103  Sum_probs=39.5

Q ss_pred             hhcccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952          291 AADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       291 ~~~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      ..|.+++|.++..||+...........  ..+.+...|...|.|++|.|+.+|+.-
T Consensus        93 ~~D~d~dG~I~~~Ef~~~~~~~~~~~~--~~~~l~~~F~~~D~d~~G~Is~~E~~~  146 (226)
T 2zfd_A           93 LFDTKHNGILGFEEFARALSVFHPNAP--IDDKIHFSFQLYDLKQQGFIERQEVKQ  146 (226)
T ss_dssp             HHCSSCSSSBCHHHHHHHHHHTSTTSC--HHHHHHHHHHHHCTTSSSSEEHHHHHH
T ss_pred             HHcCCCCCcCcHHHHHHHHHHHccCCC--HHHHHHHHHHHhCCCCCCcccHHHHHH
Confidence            446788999999999876544332222  234566789999999999999999754

>2hps_A Coelenterazine-binding protein with bound coelent; bioluminescence, southeast collabora structural genomics, secsg, structural genomics, PSI; HET: CTZ; 1.72A {Renilla muelleri} PDB: 2hq8_A

Probab=85.97  E-value=1  Score=37.05  Aligned_cols=50  Identities=28%  Similarity=0.524  Sum_probs=37.8

Q ss_pred             cccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          293 DIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       293 ~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      |.+++|.++..|+....-.....+++++++.+   |...|.|+||.|+.+++.
T Consensus       112 D~d~~G~I~~~E~~~~l~~~g~~~~~~~~~~~---~~~~D~d~dG~i~~~ef~  161 (186)
T 2hps_A          112 DTDKDGYVSLPEFKAFLQAVGPDLTDDKAITC---FNTLDFNKNGQISRDEFL  161 (186)
T ss_dssp             CTTCSSEEEHHHHHHHHHHHCTTCCHHHHHHH---HHHHCTTCSSEEEHHHHH
T ss_pred             cCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHH---HHHHcCCCCCcCcHHHHH
Confidence            77899999998877654433335777777654   666789999999999865

>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata} SCOP: a.39.1.4

Probab=85.96  E-value=1  Score=33.64  Aligned_cols=51  Identities=18%  Similarity=0.283  Sum_probs=37.4

Q ss_pred             hhcccCCCccchHHHHHHHHHH----cCCCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          291 AADIDEDGVVSAAEFIIYKLKE----MGKISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       291 ~~~l~~~g~v~~~e~v~~~l~~----~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      .-|.+++|.++..|+... +..    ...++.++++.+   |...|.|++|.|+.+++.
T Consensus        49 ~~D~d~~G~i~~~el~~~-l~~~~~~g~~~~~~~~~~~---~~~~D~~~dg~i~~~eF~  103 (109)
T 5pal_A           49 ILDKDQSGFIEEEELKGV-LKGFSAHGRDLNDTETKAL---LAAGDSDHDGKIGADEFA  103 (109)
T ss_dssp             HHCTTCSSEECHHHHHTH-HHHHCTTCCCCCHHHHHHH---HHHHCTTCSSSEEHHHHH
T ss_pred             HHCCCCCCcCcHHHHHHH-HHHHHHcCCCCCHHHHHHH---HHHhCCCCCCcCcHHHHH
Confidence            456789999998776544 344    346778877665   556689999999998864

>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2ju0_A

Probab=85.94  E-value=0.67  Score=38.32  Aligned_cols=54  Identities=19%  Similarity=0.298  Sum_probs=39.7

Q ss_pred             hhhcccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952          290 EAADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       290 ~~~~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      ...|.+++|.++..||....-........+++   ...|...|.|++|.|+.+++.-
T Consensus        70 ~~~D~d~~G~i~~~ef~~~~~~~~~~~~~~~~---~~~f~~~D~d~~G~i~~~ef~~  123 (190)
T 1fpw_A           70 TVFDKDNNGFIHFEEFITVLSTTSRGTLEEKL---SWAFELYDLNHDGYITFDEMLT  123 (190)
T ss_dssp             HTCCSSCSSEECHHHHHHHHHHHSCCCSTHHH---HHHHHHHCSSCSSEEEHHHHHH
T ss_pred             HHHCCCCCCcEeHHHHHHHHHHHccCCcHHHH---HHHHHHhcCCCCCcCcHHHHHH
Confidence            34567899999999988765444444455444   4568888999999999999753

>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1; calmodulin-like domain, EF calcium binding protein, transferase; 2.00A {Arabidopsis thaliana}

Probab=85.89  E-value=0.42  Score=38.56  Aligned_cols=50  Identities=30%  Similarity=0.443  Sum_probs=25.8

Q ss_pred             cccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          293 DIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       293 ~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      |.+++|.++..||+........   ....+.+...|..+|.|++|.|+.+|+.
T Consensus        73 d~~~~g~i~~~ef~~~~~~~~~---~~~~~~~~~~F~~~D~d~~G~i~~~e~~  122 (166)
T 2aao_A           73 DVDNSGTIDYKEFIAATLHLNK---IEREDHLFAAFTYFDKDGSGYITPDELQ  122 (166)
T ss_dssp             CTTCCSSBCHHHHHHHHTTCHH---HHTTHHHHHHHHHHCTTCSSSBCHHHHH
T ss_pred             CCCCCCeEcHHHHHHHHHHHhh---cccHHHHHHHHHHhCCCCCCcCcHHHHH
Confidence            4456666666666554321100   1122344555666666666666666654

>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B

Probab=85.89  E-value=1  Score=36.27  Aligned_cols=52  Identities=15%  Similarity=0.250  Sum_probs=39.1

Q ss_pred             hhhcccCCCccchHHHHHHHHHHcC-CCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          290 EAADIDEDGVVSAAEFIIYKLKEMG-KISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       290 ~~~~l~~~g~v~~~e~v~~~l~~~~-~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      ...|.+++|.++..|+.... ...| .+++++++.+   |...|.|+||.|+.++..
T Consensus       102 ~~~D~d~~G~I~~~el~~~l-~~~g~~~~~~~~~~~---~~~~D~d~dg~I~~~eF~  154 (166)
T 2mys_B          102 KVLDPDGKGSIKKSFLEELL-TTGGGRFTPEEIKNM---WAAFPPDVAGNVDYKNIC  154 (166)
T ss_pred             HHhCCCCCcceeHHHHHHHH-HHcCCCCCHHHHHHH---HHhcCCCCCCeEeHHHHH
Confidence            34577899999988876554 4444 5778877765   455699999999999865

>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport, ionic channel, membrane, PO potassium channel, potassium transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A

Probab=85.87  E-value=0.69  Score=40.18  Aligned_cols=54  Identities=22%  Similarity=0.259  Sum_probs=39.8

Q ss_pred             hhhcccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952          290 EAADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       290 ~~~~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      ...|.+++|.++..||+...-........   +.+...|...|.|+||.|+.+|+.-
T Consensus       109 ~~~D~d~~G~I~~~Ef~~~l~~~~~~~~~---~~l~~~F~~~D~d~dG~Is~~E~~~  162 (229)
T 3dd4_A          109 NAFDTDHNGAVSFEDFIKGLSILLRGTVQ---EKLNWAFNLYDINKDGYITKEEMLD  162 (229)
T ss_dssp             HTTCSSCCSSCCHHHHHHHHHHHHHSCHH---HHHHHHHHHHCTTCSSCCBHHHHHH
T ss_pred             HHcCCCCCCeEeHHHHHHHHHHHcCCChH---HHHHHHHHHhCCCCCCeECHHHHHH
Confidence            34567899999999998875443322222   3556679999999999999999754

>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus}

Probab=85.79  E-value=0.79  Score=35.84  Aligned_cols=53  Identities=15%  Similarity=0.377  Sum_probs=38.9

Q ss_pred             hhhcccCCCccchHHHHHHHHHHcC-CCCHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952          290 EAADIDEDGVVSAAEFIIYKLKEMG-KISQEDIALVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       290 ~~~~l~~~g~v~~~e~v~~~l~~~~-~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      ...|.+++|.++..|+... +...| .++.++++.+   |...|.|++|.|+.+|..-
T Consensus        83 ~~~D~d~~G~I~~~El~~~-l~~~g~~~~~~~~~~~---~~~~D~d~dg~i~~~eF~~  136 (143)
T 3j04_B           83 ACFDEEASGFIHEDHLREL-LTTMGDRFTDEEVDEM---YREAPIDKKGNFNYVEFTR  136 (143)
T ss_dssp             TTSCSSSCCCCCTTTHHHH-HHTSSSCCCHHHHHHH---HHHTTCCSSSCCCSTHHHH
T ss_pred             HHHCCCCCCeEcHHHHHHH-HHHcCCCCCHHHHHHH---HHHcCCCCCCcCcHHHHHH
Confidence            3456789999998876654 44554 5777777665   5566999999999998654

>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max}

Probab=85.71  E-value=1.3  Score=32.07  Aligned_cols=51  Identities=24%  Similarity=0.507  Sum_probs=37.8

Q ss_pred             hhcccCCCccchHHHHHHHHHHcC-CCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          291 AADIDEDGVVSAAEFIIYKLKEMG-KISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       291 ~~~l~~~g~v~~~e~v~~~l~~~~-~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      ..|.+++|.++..|+.. .+...| ..+.++++.+   |...|.|++|.|+.++..
T Consensus        17 ~~D~d~~G~i~~~el~~-~l~~~g~~~~~~~~~~l---~~~~d~~~dg~i~~~eF~   68 (92)
T 2kn2_A           17 VFDKDQNGYISASELRH-VMINLGEKLTDEEVEQM---IKEADLDGDGQVNYEEFV   68 (92)
T ss_dssp             HHCTTCSSEECHHHHHH-HHHHTTCCCCHHHHHHH---HHHHCSSCCSSEEHHHHH
T ss_pred             HHCCCCCCeEcHHHHHH-HHHHhCCCCCHHHHHHH---HHHhCCCCCCcEeHHHHH
Confidence            44678899999887654 455666 4677777665   556789999999999864

>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB: 2scp_A

Probab=85.63  E-value=1  Score=36.50  Aligned_cols=50  Identities=10%  Similarity=0.024  Sum_probs=33.3

Q ss_pred             CCCccchHHHHHHHHHHcCCC--CHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          296 EDGVVSAAEFIIYKLKEMGKI--SQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       296 ~~g~v~~~e~v~~~l~~~~~~--~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      ++|.++..||+.........-  .....+.+...|...|.|++|.|+.+++.
T Consensus        66 ~~g~i~~~EF~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~i~~~e~~  117 (174)
T 1q80_A           66 GGKGIDETTFINSMKEMVKNPEAKSVVEGPLPLFFRAVDTNEDNNISRDEYG  117 (174)
T ss_dssp             TTSCEEHHHHHHHHHHHTTSTTCHHHHHTHHHHHHHHHCTTSSSSBCHHHHH
T ss_pred             CCCeEcHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHhCCCCCCcccHHHHH
Confidence            778888888877655443311  12233556677888888888888888865

>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural genomics, structural genomics CONS SGC; 2.00A {Plasmodium falciparum K1}

Probab=85.63  E-value=0.22  Score=42.25  Aligned_cols=50  Identities=20%  Similarity=0.408  Sum_probs=22.9

Q ss_pred             cccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          293 DIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       293 ~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      |.+++|.++-.||+............+   .+...|..+|.|++|.|+.+|+.
T Consensus       103 D~d~~g~I~~~EF~~~~~~~~~~~~~~---~l~~~F~~~D~d~~G~Is~~El~  152 (197)
T 3pm8_A          103 DSNASGQIHYTDFLAATIDKQTYLKKE---VCLIPFKFFDIDGNGKISVEELK  152 (197)
T ss_dssp             ------CEEHHHHHHTTCCHHHHCSHH---HHHHHHHHHCTTCSSEECHHHHH
T ss_pred             CCCCCCeEcHHHHHHHHHHHHhhhhHH---HHHHHHHHHCCCCCCCCCHHHHH
Confidence            445666666666655433222222222   33445666666666666666654

>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP: a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A 1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A 2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...

Probab=85.62  E-value=1.3  Score=35.16  Aligned_cols=56  Identities=18%  Similarity=0.270  Sum_probs=40.7

Q ss_pred             hhcccCCCccchHHHHHHHHHHcCCC-CHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952          291 AADIDEDGVVSAAEFIIYKLKEMGKI-SQEDIALVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       291 ~~~l~~~g~v~~~e~v~~~l~~~~~~-~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      ..|.+++|.++..||+.......... .....+.+...|..+|.|++|.|+.+|+.-
T Consensus        64 ~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~e~~~  120 (162)
T 1top_A           64 EVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELANCFRIFDKNADGFIDIEELGE  120 (162)
T ss_dssp             HHCTTSCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSSCBCHHHHHH
T ss_pred             HHcCCCCCcEeHHHHHHHHHHHhccccccccHHHHHHHHHHhCCCCCCcCcHHHHHH
Confidence            34668888999988887765543222 223445667789999999999999999753

>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca binding, EF-hand, luminescent protein; HET: CZH; 1.10A {Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A* 1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*

Probab=85.57  E-value=0.92  Score=37.55  Aligned_cols=52  Identities=31%  Similarity=0.461  Sum_probs=35.5

Q ss_pred             hhhcccCCCccchHHHHHHHHHHcC-CCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          290 EAADIDEDGVVSAAEFIIYKLKEMG-KISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       290 ~~~~l~~~g~v~~~e~v~~~l~~~~-~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      ...|.+++|.++..|+... +...| .++.++++.+   |..+|.|++|.|+.++..
T Consensus       120 ~~~D~d~~G~I~~~El~~~-l~~~g~~~~~~~~~~~---~~~~D~d~dg~i~~~eF~  172 (195)
T 1qv0_A          120 DIFDKDGSGTITLDEWKAY-GKISGISPSQEDCEAT---FRHCDLDNAGDLDVDEMT  172 (195)
T ss_dssp             HHTC----CEECHHHHHHH-HHHHSSCCCHHHHHHH---HHHSCCCTTSCEEHHHHH
T ss_pred             HHhcCCCCCcCcHHHHHHH-HHHhCCCCCHHHHHHH---HHHhCCCCCCcCCHHHHH
Confidence            4557789999998887654 34445 4677777664   667799999999999864

>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus}

Probab=85.41  E-value=0.78  Score=40.51  Aligned_cols=53  Identities=17%  Similarity=0.303  Sum_probs=39.5

Q ss_pred             hhcccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952          291 AADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       291 ~~~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      ..|.+++|.++..||+...-........+   .+...|...|.|++|.|+.+|+.-
T Consensus       137 ~~D~d~dG~I~~~Ef~~~l~~~~~~~~~~---~l~~~F~~~D~d~dG~I~~~Ef~~  189 (256)
T 2jul_A          137 AFDADGNGAIHFEDFVVGLSILLRGTVHE---KLKWAFNLYDINKDGCITKEEMLA  189 (256)
T ss_dssp             HSSCSCCSEECSHHHHHHHHHHHSCCHHH---HHHHHHHHTCCSSSSCBCHHHHHH
T ss_pred             HhccCCCCcCcHHHHHHHHHHHhccChHH---HHHHHHHHhCCCCCCcCcHHHHHH
Confidence            44678899999999887765443333343   445678999999999999999753

>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP: a.39.1.4

Probab=85.39  E-value=1.5  Score=32.81  Aligned_cols=51  Identities=16%  Similarity=0.357  Sum_probs=37.5

Q ss_pred             hhcccCCCccchHHHHHHHHHHc---C-CCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          291 AADIDEDGVVSAAEFIIYKLKEM---G-KISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       291 ~~~l~~~g~v~~~e~v~~~l~~~---~-~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      .-|.+++|.++..|+... +...   | ..+.++++.+   |...|.|++|.|+.+++.
T Consensus        50 ~~D~d~~G~I~~~el~~~-l~~~~~~g~~~~~~~~~~~---~~~~D~~~dg~i~~~eF~  104 (109)
T 1bu3_A           50 VIDQDKSGFIEEDELKLF-LQVFSAGARALTDAETKAF---LKAGDSDGDGAIGVDEWA  104 (109)
T ss_dssp             HHCTTCSSSEEHHHHHTH-HHHHSTTCCCCCHHHHHHH---HHHHCTTCSSEECHHHHH
T ss_pred             HHCCCCCCcCcHHHHHHH-HHHHcccCCCCCHHHHHHH---HHHhCCCCCCcEeHHHHH
Confidence            446789999998876544 4444   3 4778877665   556689999999999864

>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein; HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB: 1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A

Probab=85.28  E-value=1.1  Score=36.86  Aligned_cols=52  Identities=31%  Similarity=0.496  Sum_probs=39.0

Q ss_pred             hhhcccCCCccchHHHHHHHHHHcC-CCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          290 EAADIDEDGVVSAAEFIIYKLKEMG-KISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       290 ~~~~l~~~g~v~~~e~v~~~l~~~~-~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      ...|.+++|.++..|+... +...| .++.++++.+   |...|.|+||.|+.++..
T Consensus       116 ~~~D~d~~G~Is~~El~~~-l~~~g~~~~~~~~~~~---~~~~D~d~dG~i~~~eF~  168 (191)
T 1uhk_A          116 DIVDKDQNGAITLDEWKAY-TKAAGIIQSSEDCEET---FRVCDIDESGQLDVDEMT  168 (191)
T ss_dssp             HHHCTTCSSEECHHHHHHH-HHHHTSCCSHHHHHHH---HHHSCCCTTSCEEHHHHH
T ss_pred             HHhcCCCCCcCcHHHHHHH-HHHhCCCCCHHHHHHH---HHHhCCCCCCcCcHHHHH
Confidence            4567789999999887544 44555 4677776654   667799999999999864

>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A

Probab=85.17  E-value=0.31  Score=39.05  Aligned_cols=53  Identities=19%  Similarity=0.192  Sum_probs=29.9

Q ss_pred             cccCCCccchHHHHHHHHHHcCCCC--HHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          293 DIDEDGVVSAAEFIIYKLKEMGKIS--QEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       293 ~l~~~g~v~~~e~v~~~l~~~~~~~--~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      |.+++|.++..||+...........  ......+...|..+|.|++|.|+.+|+.
T Consensus        60 D~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~el~  114 (158)
T 2jnf_A           60 DPFGNGDIDFDSFKIIGARFLGEEVNPEQMQQELREAFRLYDKEGNGYISTDVMR  114 (158)
T ss_dssp             CTTCCSEECHHHHHHHHHHHCCCCCCTTTTSSTHHHHHHHHCSSSSSSEEHHHHH
T ss_pred             CCCCCCcCcHHHHHHHHHHHhccccchhhHHHHHHHHHHHhCCCCCCeEcHHHHH
Confidence            4566777777777666544332210  0112234556677777777777777754

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=85.17  E-value=0.41  Score=46.74  Aligned_cols=54  Identities=28%  Similarity=0.485  Sum_probs=39.0

Q ss_pred             hhhcccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952          290 EAADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       290 ~~~~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      ...|.+++|.++..||+............++   +.+.|..+|.|+||.|+.+|+.-
T Consensus       397 ~~~D~d~~G~I~~~EF~~~~~~~~~~~~~~~---~~~~F~~~D~d~~G~Is~~El~~  450 (494)
T 3lij_A          397 GAADFDRNGYIDYSEFVTVAMDRKSLLSKDK---LESAFQKFDQDGNGKISVDELAS  450 (494)
T ss_dssp             HHHCTTCSSSEEHHHHHHHHSCHHHHTCHHH---HHHHHHHHCTTCSSEECHHHHHH
T ss_pred             HHhCCCCCCcCcHHHHHHHHHhhhccccHHH---HHHHHHHHCCCCCCcCCHHHHHH
Confidence            3446778999999999887544433344443   45678888999999999998754

>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A; EF-hand like, unknown function; 1.60A {Homo sapiens} SCOP: a.39.1.7

Probab=85.01  E-value=1.9  Score=31.94  Aligned_cols=52  Identities=17%  Similarity=0.264  Sum_probs=38.7

Q ss_pred             hhhcccCCCccchHHHHHHHHHHcC-CCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          290 EAADIDEDGVVSAAEFIIYKLKEMG-KISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       290 ~~~~l~~~g~v~~~e~v~~~l~~~~-~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      ..-|.+++|.++..|+... +...| .++.++++.   -+...|.|++|.++.+++.
T Consensus        31 ~~~D~d~~G~i~~~el~~~-l~~~g~~~~~~e~~~---l~~~~d~~~~g~i~~~eF~   83 (105)
T 1wlz_A           31 ENFDTMKTNTISREEFRAI-CNRRVQILTDEQFDR---LWNEMPVNAKGRLKYPDFL   83 (105)
T ss_dssp             HHHCTTCSSCBCHHHHHHH-HHHHTCCCCHHHHHH---HHTTSCBCTTSCBCHHHHH
T ss_pred             HHHCCCCCCcCcHHHHHHH-HHHhCCCCCHHHHHH---HHHHcCCCCCCCCcHHHHH
Confidence            3456789999998886654 44444 567777655   4677899999999999864

>1qx2_A Vitamin D-dependent calcium-binding protein, INTE; EF-hand (helix-loop-helix) calcium binding protein, four-HEL domain, protein engineering; HET: FME; 1.44A {Bos taurus} SCOP: a.39.1.1 PDB: 1kcy_A 1kqv_A 1ksm_A 1n65_A 1ht9_A 4icb_A 1cdn_A 1clb_A 2bca_A 1ig5_A 1igv_A 3icb_A 1d1o_A 1b1g_A 2bcb_A 1boc_A 1bod_A

Probab=84.99  E-value=0.79  Score=31.68  Aligned_cols=49  Identities=14%  Similarity=0.372  Sum_probs=34.5

Q ss_pred             cccCC-CccchHHHHHHHHHHcC-CC--CHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          293 DIDED-GVVSAAEFIIYKLKEMG-KI--SQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       293 ~l~~~-g~v~~~e~v~~~l~~~~-~~--~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      |.+++ |.++..|+... +...| ..  +.++++.+   |...|.|++|.|+.++..
T Consensus        16 D~d~~~G~i~~~el~~~-l~~~g~~~~~~~~~~~~l---~~~~D~~~~g~i~~~eF~   68 (76)
T 1qx2_A           16 AKEGDPNQISKEELKLV-MQTLGPSLLKGMSTLDEM---IEEVDKNGDGEVSFEEFL   68 (76)
T ss_dssp             TSSSCTTSEEHHHHHHH-HHHHGGGSCTTSCSHHHH---HHHHCTTCSSEECHHHHH
T ss_pred             ccCCCcCeECHHHHHHH-HHHhCCCcCCCHHHHHHH---HHHhCCCCCCcEeHHHHH
Confidence            66788 99998776544 44444 34  55555554   566789999999999864

>2bl0_B Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}

Probab=84.92  E-value=1.1  Score=35.00  Aligned_cols=52  Identities=15%  Similarity=0.341  Sum_probs=38.8

Q ss_pred             hhcccCCCccchHHHHHHHHHHcC-CCCHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952          291 AADIDEDGVVSAAEFIIYKLKEMG-KISQEDIALVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       291 ~~~l~~~g~v~~~e~v~~~l~~~~-~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      ..|.+++|.++..|+... +...| .++.++++.   -|..+|.|++|.|+.++..-
T Consensus        84 ~~D~d~~G~i~~~e~~~~-l~~~g~~~~~~~~~~---~~~~~d~~~dg~i~~~eF~~  136 (145)
T 2bl0_B           84 ALDKEGNGTIQEAELRQL-LLNLGDALTSSEVEE---LMKEVSVSGDGAINYESFVD  136 (145)
T ss_dssp             HHCSSSSSEEEHHHHHHH-HHHSSSCCCHHHHHH---HHTTCCCCTTSEEEHHHHHH
T ss_pred             HhCCCCCCeEcHHHHHHH-HHHcCCCCCHHHHHH---HHHHcCCCCCCcEeHHHHHH
Confidence            446789999998877655 45555 467777665   46778999999999998753

>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium binding protein, apoptosis, calcium, endoplasmic reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB: 2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A

Probab=84.82  E-value=0.87  Score=37.12  Aligned_cols=43  Identities=23%  Similarity=0.260  Sum_probs=32.7

Q ss_pred             hhcccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChh
Q 047952          291 AADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPS  342 (354)
Q Consensus       291 ~~~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~  342 (354)
                      ..|.+++|.++..||+......         +.+.+.|..+|.|++|.|+.+
T Consensus       118 ~~d~~~dg~i~~~eF~~~~~~~---------~~~~~~F~~~D~d~dG~i~~~  160 (172)
T 2znd_A          118 KFDRQGRGQIAFDDFIQGCIVL---------QRLTDIFRRYDTDQDGWIQVS  160 (172)
T ss_dssp             HHCTTCSSSEEHHHHHHHHHHH---------HHHHHHHHHHCTTSSSCCCCC
T ss_pred             HhCCCCCCcCcHHHHHHHHHHH---------HHHHHHHHHhCCCCCCeEeee
Confidence            3456788889988888775432         566778999999999998754

>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP: a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A 1rk9_A 1g33_A

Probab=84.81  E-value=1.3  Score=33.08  Aligned_cols=52  Identities=19%  Similarity=0.283  Sum_probs=37.7

Q ss_pred             hhhcccCCCccchHHHHHHHHHHc----CCCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          290 EAADIDEDGVVSAAEFIIYKLKEM----GKISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       290 ~~~~l~~~g~v~~~e~v~~~l~~~----~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      ..-|.+++|.++..|+... +...    ...+.++++.+   +...|.|++|.|+.++..
T Consensus        48 ~~~D~d~~G~I~~~el~~~-l~~~~~~g~~~~~~~~~~~---~~~~D~~~dg~i~~~eF~  103 (109)
T 1rwy_A           48 HILDKDKSGFIEEDELGSI-LKGFSSDARDLSAKETKTL---MAAGDKDGDGKIGVEEFS  103 (109)
T ss_dssp             HHHSTTCSSEECHHHHHTH-HHHHCTTCCCCCHHHHHHH---HHHHCTTCSSSEEHHHHH
T ss_pred             HHHCCCCCCeEcHHHHHHH-HHHHhccCCCCCHHHHHHH---HHHHCCCCCCcCCHHHHH
Confidence            3456789999998876554 4444    35778877665   455689999999999864

>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein, EF-hand, calcium ION, metal binding protein; HET: 1PE P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A

Probab=84.76  E-value=0.63  Score=38.51  Aligned_cols=53  Identities=19%  Similarity=0.235  Sum_probs=38.4

Q ss_pred             hhcccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952          291 AADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       291 ~~~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      ..|.+++|.++..||+...-........   +.+...|...|.|++|.|+.+|+.-
T Consensus        71 ~~D~d~~g~i~~~ef~~~~~~~~~~~~~---~~~~~~f~~~D~d~~G~i~~~e~~~  123 (190)
T 1g8i_A           71 VFDENKDGRIEFSEFIQALSVTSRGTLD---EKLRWAFKLYDLDNDGYITRNEMLD  123 (190)
T ss_dssp             HHCTTCSSEEEHHHHHHHHHHHHHCCHH---HHHHHHHHHHCTTCSSEEEHHHHHH
T ss_pred             HHhcCCCCeEeHHHHHHHHHHhcCCCHH---HHHHHHHHhhcCCCCCeECHHHHHH
Confidence            4467889999999988765433222323   3455678999999999999999753

>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A

Probab=84.71  E-value=1.7  Score=34.48  Aligned_cols=53  Identities=23%  Similarity=0.345  Sum_probs=39.2

Q ss_pred             hhhcccCCCccchHHHHHHHHHHcC-CCCHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952          290 EAADIDEDGVVSAAEFIIYKLKEMG-KISQEDIALVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       290 ~~~~l~~~g~v~~~e~v~~~l~~~~-~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      ...|.+++|.++..|+.... ...| .+++++++.+   |...|.|++|.|+.++..-
T Consensus        98 ~~~D~d~~G~I~~~el~~~l-~~~g~~~~~~~~~~~---~~~~D~d~dg~i~~~eF~~  151 (158)
T 2jnf_A           98 RLYDKEGNGYISTDVMREIL-AELDETLSSEDLDAM---IDEIDADGSGTVDFEEFMG  151 (158)
T ss_dssp             HHHCSSSSSSEEHHHHHHHH-HHHCTTCCHHHHHHH---HHHHCSSCCSEECSHHHHH
T ss_pred             HHhCCCCCCeEcHHHHHHHH-HHhCCcCCHHHHHHH---HHHhCCCCCCcEeHHHHHH
Confidence            34567899999998876553 4444 5778777665   5566899999999998753

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=84.55  E-value=0.59  Score=45.36  Aligned_cols=53  Identities=25%  Similarity=0.389  Sum_probs=34.6

Q ss_pred             hhcccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952          291 AADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       291 ~~~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      ..|.+++|.++..||+.........   ...+.+.+.|...|.|+||.|+.+|+.-
T Consensus       390 ~~D~d~~g~i~~~Ef~~~~~~~~~~---~~~~~~~~~F~~~D~d~dG~I~~~El~~  442 (484)
T 3nyv_A          390 AVDFDKNGYIEYSEFVTVAMDRKTL---LSRERLERAFRMFDSDNSGKISSTELAT  442 (484)
T ss_dssp             HHTCCTTSEEEHHHHHHHHHHHHHH---HHHHHHHHHHHHHCTTCCSEEEHHHHHH
T ss_pred             HhCCCCCCeEeHHHHHHHHHhcccc---CcHHHHHHHHHHHCCCCCCcCCHHHHHH
Confidence            3456778888888887665443222   2224456678888888888888887653

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=84.50  E-value=0.47  Score=46.47  Aligned_cols=54  Identities=26%  Similarity=0.396  Sum_probs=35.8

Q ss_pred             hhhcccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952          290 EAADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       290 ~~~~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      ...|.+++|.++..||+...........++   .+.+.|+..|.|+||.|+.+|+.-
T Consensus       406 ~~~D~d~dG~I~~~EF~~~~~~~~~~~~~~---~~~~~F~~~D~d~dG~Is~~El~~  459 (504)
T 3q5i_A          406 KEVDFDKNGYIEYSEFISVCMDKQILFSEE---RLRRAFNLFDTDKSGKITKEELAN  459 (504)
T ss_dssp             HHHCTTCSSSEEHHHHHHHHSCHHHHTCHH---HHHHHHHHHCTTCCSEECHHHHHH
T ss_pred             HHhCCCCCCcEeHHHHHHHHHhhhcccCHH---HHHHHHHHhcCCCCCcCcHHHHHH
Confidence            344667888888888877654332233333   445667778888888888888754

>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light chain, cell cycle protein; 1.65A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A 2fce_A

Probab=84.40  E-value=1.2  Score=35.04  Aligned_cols=52  Identities=17%  Similarity=0.404  Sum_probs=38.5

Q ss_pred             hhhcccCCCccchHHHHHHHHHHcC-CCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          290 EAADIDEDGVVSAAEFIIYKLKEMG-KISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       290 ~~~~l~~~g~v~~~e~v~~~l~~~~-~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      ...|.+++|.++..|+... +...| .++.++++.   -|...|.|++|.|+.++..
T Consensus        90 ~~~D~d~~G~I~~~el~~~-l~~~g~~~~~~~~~~---~~~~~d~d~dg~i~~~eF~  142 (148)
T 1m45_A           90 QVFDKESTGKVSVGDLRYM-LTGLGEKLTDAEVDE---LLKGVEVDSNGEIDYKKFI  142 (148)
T ss_dssp             HTTCSSSSSEEEHHHHHHH-HHHSTTCCCHHHHHH---HHTTCCCCTTSEEEHHHHH
T ss_pred             HHhCCCCCCcCCHHHHHHH-HHHcCCCCCHHHHHH---HHHHhCCCCCCeEeHHHHH
Confidence            3456789999998876654 44555 467777665   4677899999999999865

>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}

Probab=84.40  E-value=1  Score=37.38  Aligned_cols=50  Identities=28%  Similarity=0.476  Sum_probs=38.1

Q ss_pred             hhcccCCCccchHHHHHHHHHHcC-CCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          291 AADIDEDGVVSAAEFIIYKLKEMG-KISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       291 ~~~l~~~g~v~~~e~v~~~l~~~~-~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      .-|.+++|.++..|+. ..|...+ .++.++++++.+.+   | |+||.|+-+|..
T Consensus        92 ~fD~d~~G~I~~~el~-~~l~~~g~~~~~~ei~~l~~~~---d-d~dG~I~~~EF~  142 (176)
T 2lhi_A           92 VFDKNGDGLISAAELK-HVLTSIGEKLTDAEVDDMLREV---S-DGSGEINIQQFA  142 (176)
T ss_dssp             HHCSSCSSSBCHHHHH-HHHHTTTCCCCHHHHHHHHHHH---H-TTSSCBCTTHHH
T ss_pred             HhCCCCCCcCcHHHHH-HHHHHcCcccchHHHHHHHHhh---c-CCCCeEeHHHHH
Confidence            4467899999988754 4455555 68899998887655   6 899999999963

>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y 1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y 3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y 2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...

Probab=84.29  E-value=1.2  Score=35.54  Aligned_cols=48  Identities=10%  Similarity=0.114  Sum_probs=27.8

Q ss_pred             CCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          296 EDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       296 ~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      ++|.++..||+............  .+.+...|..+|.|++|.|+.+++.
T Consensus        63 ~~g~i~~~eF~~~~~~~~~~~~~--~~~l~~~F~~~D~d~~G~I~~~el~  110 (156)
T 1wdc_B           63 APGPLNFTMFLSIFSDKLSGTDS--EETIRNAFAMFDEQETKKLNIEYIK  110 (156)
T ss_dssp             SSSCCCHHHHHHHHHHHTCSCCC--HHHHHHHHHTTCTTCCSCEEHHHHH
T ss_pred             CCCcCcHHHHHHHHHHHhcCCCh--HHHHHHHHHHHCcCCCCccCHHHHH
Confidence            55667776766655433222111  1234556777777777777777764

>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain, POB1 EH domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6

Probab=84.24  E-value=0.25  Score=38.25  Aligned_cols=29  Identities=24%  Similarity=0.250  Sum_probs=19.5

Q ss_pred             CHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          317 SQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       317 ~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      ++++.+++.+.|..+|.|+||.|+.+|+.
T Consensus        17 s~~~~~~~~~~F~~~D~d~dG~Is~~el~   45 (110)
T 1iq3_A           17 TEEQREYYVNQFRSLQPDPSSFISGSVAK   45 (110)
T ss_dssp             SSSSHHHHHHHHHHHCCSSSSEEEHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCCCCeEcHHHHH
Confidence            44555666667777777777777777664

>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}

Probab=84.21  E-value=0.44  Score=34.93  Aligned_cols=32  Identities=22%  Similarity=0.280  Sum_probs=27.8

Q ss_pred             CCCHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952          315 KISQEDIALVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       315 ~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      ..++++++++.+.|...|.|++|.|+.+|+.-
T Consensus        20 ~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~   51 (91)
T 2pmy_A           20 DGDGEELARLRSVFAACDANRSGRLEREEFRA   51 (91)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHH
Confidence            45677888999999999999999999999753

>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium binding, EF-hand superfamily, S genomics, protein structure initiative, PSI; 2.10A {Danio rerio} PDB: 2q4u_A

Probab=84.19  E-value=0.93  Score=39.71  Aligned_cols=56  Identities=23%  Similarity=0.321  Sum_probs=41.8

Q ss_pred             hhhcccCCCccchHHHHHHHHHHcC-----CCCHHHHHHH-HHHhhhcCCCCCCccChhhhhh
Q 047952          290 EAADIDEDGVVSAAEFIIYKLKEMG-----KISQEDIALV-MEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       290 ~~~~l~~~g~v~~~e~v~~~l~~~~-----~~~~~~l~~i-~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      ...|.+++|.++..|+.... ...+     .+++++++.+ .+-|...|.|+||.|+.+++.-
T Consensus       203 ~~~D~d~~G~Is~~E~~~~l-~~~~~~~~~~~~~~~~~~~~~~l~~~~D~d~dG~is~~EF~~  264 (272)
T 2be4_A          203 AHYDVSRTGALEGPEVDGFV-KDMMELVRPSISGGDLDKFRECLLTHCDMNKDGKIQKSELAL  264 (272)
T ss_dssp             HHHCTTCCSEEETHHHHHHH-HHHHHHHSSSCCHHHHHHHHHHHHHHHCCSTTCEEEHHHHHH
T ss_pred             HHhCCCCCCeecHHHHHHHH-HHHHHHcCCCCCHHHHHHHHHHHHHHhCCCCCCcCcHHHHHH
Confidence            34577899999988865443 3222     5888988874 4458899999999999999754

>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}

Probab=84.18  E-value=0.61  Score=45.00  Aligned_cols=33  Identities=30%  Similarity=0.431  Sum_probs=30.1

Q ss_pred             CCCCHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952          314 GKISQEDIALVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       314 ~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      ..+++|+|+++.+.|+.+|.|+||.|+.+|+.-
T Consensus       294 E~Lt~EEI~ELREaF~~fDkDgdG~IS~eELk~  326 (440)
T 3u0k_A          294 DQLTEEQIAEFKEAFSLFDKDGDGTITTKELGT  326 (440)
T ss_dssp             BCCCHHHHHHHHHHHHHHCTTCSSEECHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHcCCCCCEECHHHHHH
Confidence            368899999999999999999999999999854

>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis thaliana} PDB: 1v1g_A 1v1f_A

Probab=83.60  E-value=0.72  Score=38.89  Aligned_cols=34  Identities=15%  Similarity=0.334  Sum_probs=17.5

Q ss_pred             HcCCCCHHHHHHHHHHhhhcCCC--CCCccChhhhh
Q 047952          312 EMGKISQEDIALVMEEFQDLDFD--QSGTLSPSDLF  345 (354)
Q Consensus       312 ~~~~~~~~~l~~i~~~f~~ld~~--~~g~l~~~d~~  345 (354)
                      +....++++++++.+.|..+|.|  ++|.|+.+|+.
T Consensus        27 ~~~~~s~~~~~~l~~~F~~~D~d~~~~G~i~~~e~~   62 (207)
T 2ehb_A           27 SVTPFTVEEVEALYELFKKLSSSIIDDGLIHKEEFQ   62 (207)
T ss_dssp             HHSSCCHHHHHHHHHHHHHHTTSSSCSSCEEHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHhccccCCCCccCHHHHH
Confidence            33344555555555555555555  55555555543

>2jq6_A EH domain-containing protein 1; metal binding protein; NMR {Homo sapiens} PDB: 2kff_A 2kfg_A 2kfh_A 2ksp_A

Probab=83.32  E-value=1.4  Score=35.68  Aligned_cols=50  Identities=14%  Similarity=0.235  Sum_probs=36.9

Q ss_pred             hhcccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952          291 AADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       291 ~~~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      ..| +++|.|+..|. ...|.+.+ ++.++++++.   ...|.|+||.|+.++...
T Consensus        59 ~fD-d~dG~Is~~El-~~~l~~~g-l~~~el~~I~---~~~D~d~dG~Ld~~EF~~  108 (139)
T 2jq6_A           59 TLS-PVNGKITGANA-KKEMVKSK-LPNTVLGKIW---KLADVDKDGLLDDEEFAL  108 (139)
T ss_dssp             HSC-CSSSEEEHHHH-HHHHHHTT-CCHHHHHHHH---HHHCSSCCSEEEHHHHHH
T ss_pred             HhC-CCCCeECHHHH-HHHHHHhC-cCHHHHHHHH---HHhCCCCCCcCcHHHHHH
Confidence            456 88999998664 44455555 7888777764   567999999999999643

>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein STR and functional analyses, riken structural genomics/proteomi initiative; 2.20A {Homo sapiens} PDB: 2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A 2het_A

Probab=83.26  E-value=0.78  Score=38.67  Aligned_cols=53  Identities=21%  Similarity=0.306  Sum_probs=38.9

Q ss_pred             hhcccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952          291 AADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       291 ~~~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      ..|.+++|.++..||....-........+++   ...|...|.|++|.|+.+|+.-
T Consensus        79 ~~D~d~~G~i~~~Ef~~~~~~~~~~~~~~~~---~~~f~~~D~d~~G~I~~~E~~~  131 (207)
T 2d8n_A           79 SFDSNLDGTLDFKEYVIALHMTTAGKTNQKL---EWAFSLYDVDGNGTISKNEVLE  131 (207)
T ss_dssp             HHCTTCCSEEEHHHHHHHHHHHSCSSSSTTH---HHHHHHHCTTCSSEECHHHHHH
T ss_pred             HhcCCCCCeEeHHHHHHHHHHHcCCCHHHHH---HHHHHHhcCCCCCeEcHHHHHH
Confidence            4466889999999988765544434444444   4568888999999999999753

>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation, calcium, metal binding protein; 1.95A {Gallus gallus} SCOP: a.39.1.4 PDB: 2kqy_A

Probab=83.25  E-value=1.1  Score=33.60  Aligned_cols=51  Identities=18%  Similarity=0.361  Sum_probs=36.9

Q ss_pred             hhcccCCCccchHHHHHHHHHHc----CCCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          291 AADIDEDGVVSAAEFIIYKLKEM----GKISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       291 ~~~l~~~g~v~~~e~v~~~l~~~----~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      .-|.+++|.++..|+... +...    ..++.++++.+   +...|.|++|.|+.++..
T Consensus        50 ~~D~d~~G~i~~~el~~~-l~~~~~~~~~~~~~~~~~~---~~~~D~~~dg~i~~~EF~  104 (109)
T 3fs7_A           50 ILDQDKSGFIEEEELQLF-LKNFSSSARVLTSAETKAF---LAAGDTDGDGKIGVEEFQ  104 (109)
T ss_dssp             HHSTTCSSSBCHHHHHTT-GGGTCTTSCCCCHHHHHHH---HHHHCTTCSSSBCHHHHH
T ss_pred             HHCCCCCCeEeHHHHHHH-HHHHhcccccCCHHHHHHH---HHHhCCCCCCcCcHHHHH
Confidence            446788999998775443 4444    35777777665   556689999999999864

>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A*

Probab=83.24  E-value=0.67  Score=38.25  Aligned_cols=56  Identities=18%  Similarity=0.410  Sum_probs=40.5

Q ss_pred             hhhcccCCCccchHHHHHHHHHHcC------CCCHHHHHHHH-HHhhhcCCCCCCccChhhhhh
Q 047952          290 EAADIDEDGVVSAAEFIIYKLKEMG------KISQEDIALVM-EEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       290 ~~~~l~~~g~v~~~e~v~~~l~~~~------~~~~~~l~~i~-~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      ..-|.+++|.++..|+... +...+      .+++++++.+. +-|...|.|++|.|+.+|+.-
T Consensus       105 ~~~D~d~~G~I~~~El~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~I~~~EF~~  167 (183)
T 1dgu_A          105 RIFDFDDDGTLNREDLSRL-VNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLSEFQH  167 (183)
T ss_dssp             HHHCTTCSSEEEHHHHHHH-HHHHHSSSCCCHHHHHHHHHHHHHHHHHHCTTSSSEEEHHHHHH
T ss_pred             HHhCCCCCCcCCHHHHHHH-HHHHhcccccCCCCHHHHHHHHHHHHHHhCCCCCCeEcHHHHHH
Confidence            3457789999998876654 33443      36677776543 458889999999999999753

>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein, regulation, complex, calcium, EF- hand, calmodulin, ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis thaliana}

Probab=83.24  E-value=1.5  Score=34.49  Aligned_cols=52  Identities=19%  Similarity=0.278  Sum_probs=39.5

Q ss_pred             hhhcccCCCccchHHHHHHHHHHcC--CCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          290 EAADIDEDGVVSAAEFIIYKLKEMG--KISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       290 ~~~~l~~~g~v~~~e~v~~~l~~~~--~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      ..-|.+++|.++..|+.. .+...|  .++.++++.+   |...|.|++|.|+.+++.
T Consensus        47 ~~~D~d~~G~I~~~el~~-~l~~~g~~~~~~~e~~~~---~~~~D~d~dG~I~~~EF~  100 (135)
T 3h4s_E           47 SLLADPERHLITAESLRR-NSGILGIEGMSKEDAQGM---VREGDLDGDGALNQTEFC  100 (135)
T ss_dssp             HHHSBTTTTBBCHHHHHH-HGGGGTCCCCCHHHHHHH---HHHHCSSCSSSBCHHHHH
T ss_pred             HHHCCCCCCcCCHHHHHH-HHHHhCCCCCCHHHHHHH---HHHhCCCCCCCCcHHHHH
Confidence            344678999999877654 456666  6888888775   556689999999999864

>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A 2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A 1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A

Probab=82.62  E-value=1.2  Score=33.20  Aligned_cols=52  Identities=17%  Similarity=0.378  Sum_probs=37.7

Q ss_pred             hhhcccCCCccchHHHHHHHHHHc---C-CCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          290 EAADIDEDGVVSAAEFIIYKLKEM---G-KISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       290 ~~~~l~~~g~v~~~e~v~~~l~~~---~-~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      ..-|.+++|.++..|+... +...   | ..++++++.+   |...|.|++|.|+.++..
T Consensus        48 ~~~D~d~~G~I~~~el~~~-l~~~~~~g~~~~~~~~~~~---~~~~D~~~dg~i~~~eF~  103 (108)
T 2pvb_A           48 YVIDQDKSGFIEEDELKLF-LQNFSPSARALTDAETKAF---LADGDKDGDGMIGVDEFA  103 (108)
T ss_dssp             HHHCTTCSSSBCHHHHHTG-GGGTCTTSCCCCHHHHHHH---HHHHCTTCSSSBCHHHHH
T ss_pred             HHHCCCCCCcCCHHHHHHH-HHHHhccCCCCCHHHHHHH---HHHhCCCCCCcEeHHHHH
Confidence            3446789999998876544 4444   3 4778877665   556689999999999864

>1k2h_A S100A1, S-100 protein, alpha chain; non-covalent homodimer, X-type four-helix bundle, metal binding protein; NMR {Rattus norvegicus} SCOP: a.39.1.2 PDB: 1zfs_A 2k2f_A 2kbm_A 2l0p_A 2jpt_A

Probab=82.59  E-value=1.7  Score=31.40  Aligned_cols=52  Identities=17%  Similarity=0.261  Sum_probs=36.4

Q ss_pred             hhc-ccCCC-ccchHHHHHHHHHH----cC-CCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          291 AAD-IDEDG-VVSAAEFIIYKLKE----MG-KISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       291 ~~~-l~~~g-~v~~~e~v~~~l~~----~~-~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      .-| .+++| .++..|+....-..    .| ..+.++++.+.   ...|.|++|.|+.+|..
T Consensus        17 ~~D~~d~~G~~I~~~el~~~l~~~~~~~~g~~~~~~~~~~~~---~~~D~d~dg~i~~~eF~   75 (93)
T 1k2h_A           17 AHSGKEGDKYKLSKKELKDLLQTELSSFLDVQKDADAVDKIM---KELDENGDGEVDFQEFV   75 (93)
T ss_dssp             HHHTTSSCCSSCCHHHHHHHHHHHTHHHHHCCCCHHHHHHHH---HHHHHCTTSCCCHHHHH
T ss_pred             HHcccCCCcCccCHHHHHHHHHHHHHHHhCCCCCHHHHHHHH---HHhCCCCCCcCcHHHHH
Confidence            445 58888 99988876543221    33 57787776654   55678999999999864

>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin; EF-hands, calcium, metal binding protein; 2.17A {Bos taurus} PDB: 2f2p_A

Probab=82.22  E-value=1.6  Score=35.52  Aligned_cols=54  Identities=24%  Similarity=0.402  Sum_probs=40.3

Q ss_pred             hhcccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952          291 AADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       291 ~~~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      ..|.+++|.++..||+........  .....+.+.+.|..+|.|++|.|+.+|+.-
T Consensus        55 ~~D~~~~g~i~~~EF~~~~~~~~~--~~~~~~~~~~~F~~~D~d~~G~I~~~E~~~  108 (179)
T 2f2o_A           55 EVDADGNGTIDFPEFLTMMARKMK--DTDSEEEIREAFRVFDKDGNGYISAAELRH  108 (179)
T ss_dssp             HHCTTCSSSBCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHCTTCSSEECHHHHHH
T ss_pred             HhccCCCCCCcHHHHHHHHHHHcc--CcccHHHHHHHHHHhCCCCCCcCcHHHHHH
Confidence            446788899999999876544332  233445677889999999999999999753

>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z 1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z 3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z 2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...

Probab=82.07  E-value=1.7  Score=34.46  Aligned_cols=55  Identities=25%  Similarity=0.411  Sum_probs=39.7

Q ss_pred             hhhcccCCCccchHHHHHHHHHHcC-CCCHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952          290 EAADIDEDGVVSAAEFIIYKLKEMG-KISQEDIALVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       290 ~~~~l~~~g~v~~~e~v~~~l~~~~-~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      ...|.+++|.++..|+... +...| .++.++++.+.+.+. .|.|++|.|+.++..-
T Consensus        91 ~~~D~d~~G~I~~~el~~~-l~~~g~~~~~~~~~~~~~~~~-~D~d~dg~i~~~eF~~  146 (156)
T 1wdc_C           91 KTFDREGQGFISGAELRHV-LTALGERLSDEDVDEIIKLTD-LQEDLEGNVKYEDFVK  146 (156)
T ss_dssp             HTTCSSSSSEEEHHHHHHH-HHHSSSCCCHHHHHHHHHHHT-CCCCTTSEEEHHHHHH
T ss_pred             HHhCCCCCCcCcHHHHHHH-HHHcCCCCCHHHHHHHHHHhC-CCCCCCCcEeHHHHHH
Confidence            3456789999998876655 44555 578888777654421 6999999999999753

>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.00A {Beroe abyssicola}

Probab=81.88  E-value=1.8  Score=36.39  Aligned_cols=51  Identities=31%  Similarity=0.487  Sum_probs=39.4

Q ss_pred             hhhcccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          290 EAADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       290 ~~~~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      ...|.+++|.++..|+... +...| +++++++.+   |...|.|+||.|+.+++.
T Consensus       135 ~~~D~d~~G~Is~~El~~~-l~~~g-~~~~~~~~~---~~~~D~d~dG~I~~~EF~  185 (208)
T 2hpk_A          135 DVLDDDGDGTVDVDELKTM-MKAFD-VPQEAAYTF---FEKADTDKSGKLERTELV  185 (208)
T ss_dssp             HHHCTTCSSSBCHHHHHHH-HHHTT-SCTTHHHHH---HHHHCTTCCSSBCHHHHH
T ss_pred             HHhCCCCCCcCCHHHHHHH-HHHhC-cCHHHHHHH---HHHhCCCCCCcCcHHHHH
Confidence            4557789999999887654 56677 777777654   566799999999999965

>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens} SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B* 1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C

Probab=81.73  E-value=1.6  Score=34.30  Aligned_cols=51  Identities=24%  Similarity=0.442  Sum_probs=38.0

Q ss_pred             hhhcccCCCccchHHHHHHHHHHcC-CCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          290 EAADIDEDGVVSAAEFIIYKLKEMG-KISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       290 ~~~~l~~~g~v~~~e~v~~~l~~~~-~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      ...|.+++|.++..|+... +...| .+++++++.+   |...| |++|.|+.++..
T Consensus        94 ~~~D~d~~G~I~~~el~~~-l~~~g~~~~~~~~~~~---~~~~d-~~dg~i~~~eF~  145 (151)
T 1w7j_B           94 RVFDKEGNGKVMGAELRHV-LTTLGEKMTEEEVETV---LAGHE-DSNGCINYEAFL  145 (151)
T ss_dssp             HTTCTTSSSEEEHHHHHHH-HHHSSSCCCHHHHHHH---HTTCC-CTTSEEEHHHHH
T ss_pred             HHhCCCCCCcCcHHHHHHH-HHHcCCCCCHHHHHHH---HHhcc-CCCCeEeHHHHH
Confidence            4557789999998886654 45555 4777777665   56778 999999998864

>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A

Probab=81.70  E-value=0.99  Score=35.94  Aligned_cols=33  Identities=21%  Similarity=0.361  Sum_probs=27.2

Q ss_pred             CCCCHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952          314 GKISQEDIALVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       314 ~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      ..++++++.++.+.|..+|.|++|.|+.+|+.-
T Consensus        15 ~~l~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~   47 (161)
T 3fwb_A           15 SELLEEQKQEIYEAFSLFDMNNDGFLDYHELKV   47 (161)
T ss_dssp             TTSCHHHHHHHHHHHHHHCTTSSSEECHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHH
Confidence            346788888888899999999999999888753

>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*

Probab=81.67  E-value=2.1  Score=33.36  Aligned_cols=51  Identities=22%  Similarity=0.401  Sum_probs=37.6

Q ss_pred             hhhcccCCCccchHHHHHHHHHHcC-CCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          290 EAADIDEDGVVSAAEFIIYKLKEMG-KISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       290 ~~~~l~~~g~v~~~e~v~~~l~~~~-~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      ..-|.+++|.++..|+... +...| .++.++++.+   |.. |.|++|.|+.+++.
T Consensus        92 ~~~D~d~~G~i~~~el~~~-l~~~g~~~~~~~~~~~---~~~-d~~~dg~i~~~eF~  143 (149)
T 2mys_C           92 RVFDKEGNGTVMGAELRHV-LATLGEKMTEEEVEEL---MKG-QEDSNGCINYEAFV  143 (149)
T ss_pred             HHhCCCCCceEcHHHHHHH-HHHhCCCCCHHHHHHH---Hhh-CCCCCCcEeHHHHH
Confidence            3456789999998886654 44444 5777777665   556 89999999999875

>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP, structural genomics, PSI; 1.95A {Leishmania major} SCOP: a.39.1.8

Probab=81.43  E-value=2.4  Score=35.31  Aligned_cols=37  Identities=16%  Similarity=0.312  Sum_probs=17.8

Q ss_pred             cccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCc
Q 047952          293 DIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGT  338 (354)
Q Consensus       293 ~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~  338 (354)
                      |.+++|.++..||+.....         ++.+.+.|...|.|++|.
T Consensus       139 D~d~dg~i~~~eF~~~~~~---------~~~~~~~F~~~D~d~dG~  175 (191)
T 1y1x_A          139 DRQRRGSLGFDDYVELSIF---------VCRVRNVFAFYDRERTGQ  175 (191)
T ss_dssp             CTTCSSSBCHHHHHHHHHH---------HHHHHHHHHHHCTTCCSE
T ss_pred             CCCCCCeEeHHHHHHHHHH---------HHHHHHHHHHhCcCCCce
Confidence            3345555555555444322         133444555555555555

>3rm1_A Protein S100-B; alpha-helical, EF hand, metal binding protein-protein bindin; 1.24A {Bos taurus} PDB: 3rlz_A 1cfp_A 3cr2_A 3cr4_X* 3cr5_X* 3gk1_A* 3gk2_A* 3gk4_X* 3iqo_A 3iqq_A 3lle_A* 1psb_A 3czt_X 2h61_A 3d0y_A* 3d10_A* 3hcm_A* 3lk1_A* 3lk0_A* 1b4c_A ...

Probab=81.22  E-value=3.1  Score=30.40  Aligned_cols=44  Identities=16%  Similarity=0.209  Sum_probs=30.8

Q ss_pred             CccchHHHHHHHHHH-----cC-CCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          298 GVVSAAEFIIYKLKE-----MG-KISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       298 g~v~~~e~v~~~l~~-----~~-~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      |.++..|... .+..     .| ..++++++++   +.+.|.|+||.|+.++..
T Consensus        26 g~Is~~EL~~-~l~~~~~~~lg~~~~~~~v~~~---~~~~D~d~dG~I~f~EF~   75 (92)
T 3rm1_A           26 HKLKKSELKE-LINNELSHFLEEIKEQEVVDKV---METLDSNGDGECDFQEFM   75 (92)
T ss_dssp             TSBCHHHHHH-HHHHHCTTTSCCCCSHHHHHHH---HHHHCTTSSSSBCHHHHH
T ss_pred             CeECHHHHHH-HHHHHhhhhccCcccHHHHHHH---HHHHcCCCCCCCcHHHHH
Confidence            4899877543 3444     34 4667777665   556699999999999864

>2bl0_C Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}

Probab=81.02  E-value=2.2  Score=33.03  Aligned_cols=51  Identities=14%  Similarity=0.277  Sum_probs=37.7

Q ss_pred             hhhcccCCCccchHHHHHHHHHHcC-CCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          290 EAADIDEDGVVSAAEFIIYKLKEMG-KISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       290 ~~~~l~~~g~v~~~e~v~~~l~~~~-~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      ...|.+++|.++..|+... +...| .++.++++.+.   ...| |++|.|+.++..
T Consensus        86 ~~~D~d~~G~i~~~el~~~-l~~~g~~~~~~~~~~~~---~~~d-~~dg~i~~~eF~  137 (142)
T 2bl0_C           86 RTFDPEGTGYIPKAALQDA-LLNLGDRLKPHEFAEFL---GITE-TEKGQIRYDNFI  137 (142)
T ss_dssp             HHTCCSSCSCEEHHHHHHH-HHHSSSCCCHHHHHHHH---HHHC-CSSSEECSHHHH
T ss_pred             HHHCCCCCCcCcHHHHHHH-HHHcCCCCCHHHHHHHH---HHhC-CCCCcEeHHHHH
Confidence            3456789999998886655 45555 57888877654   4557 999999998865

>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein; HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB: 1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A

Probab=80.89  E-value=1.2  Score=36.68  Aligned_cols=56  Identities=18%  Similarity=0.023  Sum_probs=37.2

Q ss_pred             hhcccCCCccchHHHHHHHHHHcC-------CCCHHHHH-HHHHHhhhcCCCCCCccChhhhhh
Q 047952          291 AADIDEDGVVSAAEFIIYKLKEMG-------KISQEDIA-LVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       291 ~~~l~~~g~v~~~e~v~~~l~~~~-------~~~~~~l~-~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      ..|.+++|.|+..||+...-....       ....+.+. .+.+.|...|.|++|.|+.+|+.-
T Consensus        70 ~~D~d~~g~i~~~EF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~Is~~El~~  133 (191)
T 1uhk_A           70 GAGMKYGVETDWPAYIEGWKKLATDELEKYAKNEPTLIRIWGDALFDIVDKDQNGAITLDEWKA  133 (191)
T ss_dssp             HTTCCTTCEEEHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCTTCSSEECHHHHHH
T ss_pred             HhCcCCCCcCcHHHHHHHHHHHhcchhhhhhhhhHHHHHHHHHHHHHHhcCCCCCcCcHHHHHH
Confidence            346789999999999876433211       11111111 123779999999999999999753

>2bl0_B Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}

Probab=80.85  E-value=0.51  Score=36.95  Aligned_cols=51  Identities=20%  Similarity=0.234  Sum_probs=37.4

Q ss_pred             cCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952          295 DEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       295 ~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      +++|.++..||+........ ......+.+...|..+|.|++|.|+.+|+.-
T Consensus        50 ~~~g~i~~~eF~~~~~~~~~-~~~~~~~~l~~~F~~~D~d~~G~i~~~e~~~  100 (145)
T 2bl0_B           50 LNAKEFDLATFKTVYRKPIK-TPTEQSKEMLDAFRALDKEGNGTIQEAELRQ  100 (145)
T ss_dssp             HTSSEECHHHHHHHHTSCCC-CGGGGHHHHHHHHHHHCSSSSSEEEHHHHHH
T ss_pred             cCCCeEcHHHHHHHHHHHhh-cCcccHHHHHHHHHHhCCCCCCeEcHHHHHH
Confidence            67888998888876533210 2334455677889999999999999999764

>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B

Probab=80.83  E-value=1  Score=36.25  Aligned_cols=32  Identities=22%  Similarity=0.315  Sum_probs=28.4

Q ss_pred             CCCHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952          315 KISQEDIALVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       315 ~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      ..++++++++.+.|..+|.|++|.|+.+|+.-
T Consensus        18 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~   49 (166)
T 2mys_B           18 MFDETEIEDFKEAFTVIDQNADGIIDKDDLRE   49 (166)
T ss_pred             hCCHHHHHHHHHHHHHHCCCCCCcCCHHHHHH
Confidence            46788899999999999999999999999764

>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion, structural genomics, PSI, protein structur initiative, structural genomics of pathogenic protozoa CONS SGPP; 1.70A {Plasmodium falciparum} PDB: 2auc_A

Probab=80.79  E-value=1.9  Score=33.78  Aligned_cols=49  Identities=10%  Similarity=0.194  Sum_probs=38.0

Q ss_pred             hhcccCCCccchHHHHHHHHHHcC-CCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          291 AADIDEDGVVSAAEFIIYKLKEMG-KISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       291 ~~~l~~~g~v~~~e~v~~~l~~~~-~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      .-|.+++|.++..|+... +...| .+++++++.+.+.+     |++|.|+-++..
T Consensus        92 ~~D~d~~G~I~~~el~~~-l~~~g~~~~~~~~~~~~~~~-----d~dg~i~~~eF~  141 (146)
T 2qac_A           92 HFDNNCTGYLTKSQMKNI-LTTWGDALTDQEAIDALNAF-----SSEDNIDYKLFC  141 (146)
T ss_dssp             TTCTTCSSEEEHHHHHHH-HHHSSSCCCHHHHHHHHHHH-----CSSSEEEHHHHH
T ss_pred             HhCCCCCCCCCHHHHHHH-HHHhCCCCCHHHHHHHHHHc-----CCCCcCcHHHHH
Confidence            446788999998877644 45555 58899999888877     889999998864

>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal binding protein; 2.10A {Mus musculus} PDB: 2g2b_A

Probab=80.78  E-value=2.8  Score=33.54  Aligned_cols=52  Identities=15%  Similarity=0.301  Sum_probs=38.2

Q ss_pred             hhhcccCCCccchHHHHHHHHHHcC-CCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          290 EAADIDEDGVVSAAEFIIYKLKEMG-KISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       290 ~~~~l~~~g~v~~~e~v~~~l~~~~-~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      ...|.+++|.++..|+... +...| .++.++++.+   |...|.|++|.|+.++..
T Consensus        55 ~~~D~d~dG~I~~~El~~~-l~~~g~~~~~~~~~~l---~~~~D~d~dg~I~~~eF~  107 (147)
T 1wy9_A           55 MEFDLNGNGDIDIMSLKRM-LEKLGVPKTHLELKRL---IREVSSGSEETFSYSDFL  107 (147)
T ss_dssp             TTSCCCTTSSEEHHHHHHH-HHHTTCCCCHHHHHHH---HHHHCSSCTTEECHHHHH
T ss_pred             HHHCCCCCCcCcHHHHHHH-HHHhCCCCCHHHHHHH---HHHhCCCCCCcEeHHHHH
Confidence            3446779999998887654 45555 5677777665   456689999999999864

>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4 PDB: 2pas_A 3pat_A

Probab=80.75  E-value=1.6  Score=32.64  Aligned_cols=51  Identities=22%  Similarity=0.408  Sum_probs=36.9

Q ss_pred             hhcccCCCccchHHHHHHHHHHc---C-CCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          291 AADIDEDGVVSAAEFIIYKLKEM---G-KISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       291 ~~~l~~~g~v~~~e~v~~~l~~~---~-~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      .-|.+++|.++..|+... +...   | .++.++++.+   |...|.|++|.|+.++..
T Consensus        50 ~~D~d~~G~I~~~el~~~-l~~~~~~g~~~~~~~~~~~---~~~~d~~~dg~i~~~eF~  104 (110)
T 1pva_A           50 AIDADASGFIEEEELKFV-LKSFAADGRDLTDAETKAF---LKAADKDGDGKIGIDEFE  104 (110)
T ss_dssp             HHCTTCSSSBCHHHHHTG-GGGTCTTCCCCCHHHHHHH---HHHHCTTCSSSBCHHHHH
T ss_pred             HhCCCCCCcCcHHHHHHH-HHHHhhcCCCCCHHHHHHH---HHHhCCCCCCeEcHHHHH
Confidence            446789999998775543 4444   3 4777777665   556689999999999864

>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A

Probab=80.63  E-value=0.71  Score=32.58  Aligned_cols=52  Identities=19%  Similarity=0.477  Sum_probs=37.2

Q ss_pred             hhhcccCCCccchHHHHHHHHHHcC--CCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          290 EAADIDEDGVVSAAEFIIYKLKEMG--KISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       290 ~~~~l~~~g~v~~~e~v~~~l~~~~--~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      ...|.+++|.++..|+... +...|  ..+.++++.+   |...|.|++|.|+.++..
T Consensus        15 ~~~D~d~~G~i~~~el~~~-l~~~g~~~~~~~~~~~~---~~~~D~~~dg~i~~~eF~   68 (81)
T 1c7v_A           15 KVFDANGDGVIDFDEFKFI-MQKVGEEPLTDAEVEEA---MKEADEDGNGVIDIPEFM   68 (81)
T ss_dssp             HHHSCSGGGEECHHHHHHH-SSTTTTCCCCHHHHHHH---HHHHCSSGGGSEEHHHHH
T ss_pred             HHHCCCCCCcCCHHHHHHH-HHHhCCCCCCHHHHHHH---HHHhCCCCCCcCcHHHHH
Confidence            3456788999998776543 44444  4567776554   566789999999999864

>2lvv_A Flagellar calcium-binding protein TB-24; EF-hand, metal binding protein; NMR {Trypanosoma brucei brucei}

Probab=80.53  E-value=0.9  Score=39.33  Aligned_cols=51  Identities=22%  Similarity=0.166  Sum_probs=29.7

Q ss_pred             cccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952          293 DIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       293 ~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      |.+++|.++..||+...+.....   ..-+.+...|..+|.|++|.|+.+|+.-
T Consensus       107 D~d~~G~I~~~EF~~~~~~~~~~---~~~~~l~~~F~~~D~d~dG~Is~~El~~  157 (226)
T 2lvv_A          107 KVKGVGEEDLVEFLEFRLMLCYI---YDIFELTVMFDTMDKDGSLLLELQEFKE  157 (226)
T ss_dssp             HHSCCCCCSCBCHHHHHHHHHHH---HHHHHHHHHHHHHSCSSCCEECHHHHHH
T ss_pred             CCCCCCcCCHHHHHHHHHHHHhc---cCHHHHHHHHHHHcCCCCCeEcHHHHHH
Confidence            45677777777776642221111   1123555667777777777777777653

>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand, phosphoprotein, calcium binding; 2.65A {Homo sapiens}

Probab=80.35  E-value=3.9  Score=33.93  Aligned_cols=54  Identities=26%  Similarity=0.330  Sum_probs=39.0

Q ss_pred             hhhhcccCCCccchHHHHHHHHHHcC-CCCHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952          289 LEAADIDEDGVVSAAEFIIYKLKEMG-KISQEDIALVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       289 l~~~~l~~~g~v~~~e~v~~~l~~~~-~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      ....|.+++|.++..|+... +...| ..+.++++.+   |...|.|++|.|+.+++.-
T Consensus        43 F~~~D~d~~G~i~~~e~~~~-l~~~~~~~~~~~~~~~---~~~~D~d~dg~i~~~ef~~   97 (204)
T 3e3r_A           43 FRQLDRDGSRSLDADEFRQG-LAKLGLVLDQAEAEGV---CRKWDRNGSGTLDLEEFLR   97 (204)
T ss_dssp             HHHHCTTCCSSBCHHHHHHH-HHTTTCCCCHHHHHHH---HHHHCTTCSSSBCHHHHHH
T ss_pred             HHHHccCCCCCcCHHHHHHH-HHHcCCCCCHHHHHHH---HHHhccCCCCcCcHHHHHH
Confidence            34557789999999887654 44444 4667666554   5566899999999999754

>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion, structural genomics, PSI, protein structur initiative, structural genomics of pathogenic protozoa CONS SGPP; 1.70A {Plasmodium falciparum} PDB: 2auc_A

Probab=80.11  E-value=2  Score=33.70  Aligned_cols=25  Identities=20%  Similarity=0.295  Sum_probs=20.9

Q ss_pred             HHHHHHhhhcCCCCCCccChhhhhh
Q 047952          322 ALVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       322 ~~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      +.+.+.|...|.|++|.|+.+|+.-
T Consensus        84 ~~l~~~F~~~D~d~~G~I~~~el~~  108 (146)
T 2qac_A           84 EELIKMFAHFDNNCTGYLTKSQMKN  108 (146)
T ss_dssp             HHHHHHHHTTCTTCSSEEEHHHHHH
T ss_pred             HHHHHHHHHhCCCCCCCCCHHHHHH
Confidence            3456779999999999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	354
d1lnqa2	80	f.14.1.1 (A:19-98) Potassium channel-related prote	7e-14
d1lnqa2	80	f.14.1.1 (A:19-98) Potassium channel-related prote	3e-12
d1r3jc_	103	f.14.1.1 (C:) Potassium channel protein {Streptomy	3e-11
d1r3jc_	103	f.14.1.1 (C:) Potassium channel protein {Streptomy	2e-08
d1xl4a2	116	f.14.1.1 (A:23-138) Inward rectifier potassium cha	9e-09
d1xl4a2	116	f.14.1.1 (A:23-138) Inward rectifier potassium cha	1e-05
d1p7ba2	116	f.14.1.1 (A:36-151) Inward rectifier potassium cha	2e-08
d1p7ba2	116	f.14.1.1 (A:36-151) Inward rectifier potassium cha	6e-05
d2h8pc1	57	f.14.1.1 (C:22-78) Potassium channel protein {Stre	9e-05

>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Length = 80

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

 Score = 64.0 bits (156), Expect = 7e-14
 Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 7/84 (8%)

Query: 70  RVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKL 129
           R+L+ + A +  G+  F+     IEG        S+Y+  VT+ TVGYGD  P++ +   
Sbjct: 4   RILLLVLAVIIYGTAGFHF----IEGE---SWTVSLYWTFVTIATVGYGDYSPSTPLGMY 56

Query: 130 LSCAFVFTGMGLVGMFLSKAADYL 153
            +   +  G+G   + + +  ++L
Sbjct: 57  FTVTLIVLGIGTFAVAVERLLEFL 80

>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Length = 80

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

 Score = 59.7 bits (145), Expect = 3e-12
 Identities = 27/75 (36%), Positives = 36/75 (48%)

Query: 192 MLVLELVLILVGTIFLVVVEKMSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWISS 251
           +L+L L +I+ GT     +E  S+  + Y    TI T+GYGD S ST  G  F V  I  
Sbjct: 5   ILLLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVL 64

Query: 252 STMTLAQFFLYVAEF 266
              T A     + EF
Sbjct: 65  GIGTFAVAVERLLEF 79

>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Length = 103

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel protein
species: Streptomyces coelicolor [TaxId: 1902]

 Score = 57.2 bits (138), Expect = 3e-11
 Identities = 20/91 (21%), Positives = 39/91 (42%)

Query: 68  FKRVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVS 127
                V L   L  GS           G +      ++++ + T TTVGYGDL P ++  
Sbjct: 8   AGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWG 67

Query: 128 KLLSCAFVFTGMGLVGMFLSKAADYLVDKQE 158
           + ++   +  G+   G+  +  A + V +++
Sbjct: 68  RCVAVVVMVAGITSFGLVTAALATWFVGREQ 98

>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Length = 103

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel protein
species: Streptomyces coelicolor [TaxId: 1902]

 Score = 49.5 bits (118), Expect = 2e-08
 Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 7/91 (7%)

Query: 190 IIMLVLELVLILVGTIFLVVVEKM-------SFVDAFYCVCSTITTLGYGDKSFSTTGGR 242
               VL ++++L G+   V+ E+        ++  A +    T TT+GYGD    T  GR
Sbjct: 9   GAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGR 68

Query: 243 AFGVVWISSSTMTLAQFFLYVAEFNTEKRQK 273
              VV + +   +       +A +   + Q+
Sbjct: 69  CVAVVVMVAGITSFGLVTAALATWFVGREQE 99

>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Length = 116

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Inward rectifier potassium channel kirbac3.1
species: Magnetospirillum magnetotacticum [TaxId: 188]

 Score = 50.8 bits (121), Expect = 9e-09
 Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 1/77 (1%)

Query: 71  VLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLL 130
             +YL          + A    IE  +     D+ +F + TM T+GYG L+P   ++  L
Sbjct: 32  TGLYLVTNALFALA-YLACGDVIENARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTL 90

Query: 131 SCAFVFTGMGLVGMFLS 147
                  GM  + +  S
Sbjct: 91  VTLEALCGMLGLAVAAS 107

>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Length = 116

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Inward rectifier potassium channel kirbac3.1
species: Magnetospirillum magnetotacticum [TaxId: 188]

 Score = 41.9 bits (98), Expect = 1e-05
 Identities = 13/78 (16%), Positives = 27/78 (34%), Gaps = 10/78 (12%)

Query: 190 IIMLVLELVLILVGTIFLVV----------VEKMSFVDAFYCVCSTITTLGYGDKSFSTT 239
           + + ++  + ++   +F +               SF DAF+    T+ T+GYG       
Sbjct: 26  VFITLITGLYLVTNALFALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGKLIPIGP 85

Query: 240 GGRAFGVVWISSSTMTLA 257
                  +      + LA
Sbjct: 86  LANTLVTLEALCGMLGLA 103

>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} Length = 116

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Inward rectifier potassium channel Kirbac1.1
species: Burkholderia pseudomallei [TaxId: 28450]

 Score = 49.6 bits (118), Expect = 2e-08
 Identities = 15/77 (19%), Positives = 34/77 (44%), Gaps = 1/77 (1%)

Query: 71  VLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLL 130
             +++        L +   ++ I        + + +F + T+ TVGYGD+ P +V +  +
Sbjct: 33  AALFVVNNTLFALL-YQLGDAPIANQSPPGFVGAFFFSVETLATVGYGDMHPQTVYAHAI 91

Query: 131 SCAFVFTGMGLVGMFLS 147
           +   +F GM  + +   
Sbjct: 92  ATLEIFVGMSGIALSTG 108

>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} Length = 116

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Inward rectifier potassium channel Kirbac1.1
species: Burkholderia pseudomallei [TaxId: 28450]

 Score = 40.0 bits (93), Expect = 6e-05
 Identities = 17/77 (22%), Positives = 28/77 (36%), Gaps = 10/77 (12%)

Query: 191 IMLVLELVLILVGTIFLVV----------VEKMSFVDAFYCVCSTITTLGYGDKSFSTTG 240
               L  + ++  T+F ++               FV AF+    T+ T+GYGD    T  
Sbjct: 28  FFASLAALFVVNNTLFALLYQLGDAPIANQSPPGFVGAFFFSVETLATVGYGDMHPQTVY 87

Query: 241 GRAFGVVWISSSTMTLA 257
             A   + I      +A
Sbjct: 88  AHAIATLEIFVGMSGIA 104

>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Length = 57

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel protein
species: Streptomyces coelicolor [TaxId: 1902]

 Score = 37.5 bits (87), Expect = 9e-05
 Identities = 12/46 (26%), Positives = 17/46 (36%)

Query: 72  LVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGY 117
            V L   L  GS           G +      ++++   T TTVGY
Sbjct: 12  TVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWACETATTVGY 57

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	354
d1r3jc_	103	Potassium channel protein {Streptomyces coelicolor	99.78
d1r3jc_	103	Potassium channel protein {Streptomyces coelicolor	99.74
d1lnqa2	80	Potassium channel-related protein MthK {Archaeon M	99.61
d1lnqa2	80	Potassium channel-related protein MthK {Archaeon M	99.57
d1xl4a2	116	Inward rectifier potassium channel kirbac3.1 {Magn	99.55
d1p7ba2	116	Inward rectifier potassium channel Kirbac1.1 {Burk	99.55
d1xl4a2	116	Inward rectifier potassium channel kirbac3.1 {Magn	99.45
d1p7ba2	116	Inward rectifier potassium channel Kirbac1.1 {Burk	99.43
d2h8pc1	57	Potassium channel protein {Streptomyces coelicolor	98.86
d2h8pc1	57	Potassium channel protein {Streptomyces coelicolor	98.48
d2hf5a1	33	Troponin C {Human (Homo sapiens), cardiac isoform	94.5
d2pq3a1	73	Calmodulin {Rattus norvegicus [TaxId: 10116]}	94.24
d1tiza_	67	Calmodulin-related protein T21P5.17 {Thale cress (	94.2
d2opoa1	81	Polcalcin Che a 3 {Pigweed (Chenopodium album) [Ta	94.16
d1f54a_	77	Calmodulin {Baker's yeast (Saccharomyces cerevisia	94.08
d2opoa1	81	Polcalcin Che a 3 {Pigweed (Chenopodium album) [Ta	93.08
d1avsa_	81	Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	93.07
d2fcea1	61	Calmodulin {Cow (Bos taurus) [TaxId: 9913]}	92.32
d1wlza1	83	DJ-1-binding protein, DJBP {Human (Homo sapiens) [	92.14
d1jfja_	134	EHCABP {Entamoeba (Entamoeba histolytica) [TaxId:	91.79
d1ggwa_	140	Cdc4p {Fission yeast (Schizosaccharomyces pombe) [	91.47
d1wdcb_	142	Myosin Essential Chain {Bay scallop (Aequipecten i	91.18
d1oqpa_	77	Caltractin (centrin 2) {Green algae (Chlamydomonas	90.91
d1avsa_	81	Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	90.44
d1fi5a_	81	Troponin C {Chicken (Gallus gallus), cardiac isofo	90.36
d1fi6a_	92	Reps1 {Mouse (Mus musculus) [TaxId: 10090]}	90.3
d1exra_	146	Calmodulin {Ciliate (Paramecium tetraurelia) [TaxI	90.18
d1jc2a_	75	Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	90.14
d2mysc_	145	Myosin Regulatory Chain {Chicken (Gallus gallus) [	89.77
d1k94a_	165	Grancalcin {Human (Homo sapiens) [TaxId: 9606]}	89.69
d1snla_	99	Nucleobindin 1 (CALNUC) {Human (Homo sapiens) [Tax	89.36
d1fw4a_	65	Calmodulin {Cow (Bos taurus) [TaxId: 9913]}	89.19
d1s6ja_	87	Calcium-dependent protein kinase sk5 CLD {Soybean	89.16
d1qv0a_	189	Calcium-regulated photoprotein {Hydrozoa (Obelia l	89.11
d2pq3a1	73	Calmodulin {Rattus norvegicus [TaxId: 10116]}	89.11
d1c07a_	95	Eps15 {Human (Homo sapiens) [TaxId: 9606]}	89.02
d1f54a_	77	Calmodulin {Baker's yeast (Saccharomyces cerevisia	88.45
d1topa_	162	Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	88.4
d1wrka1	82	Troponin C {Human (Homo sapiens), cardiac isoform	88.04
d1pvaa_	109	Parvalbumin {Pike (Esox lucius) [TaxId: 8010]}	88.03
d1c07a_	95	Eps15 {Human (Homo sapiens) [TaxId: 9606]}	87.71
d1wrka1	82	Troponin C {Human (Homo sapiens), cardiac isoform	87.66
d1qxpa2	188	Calpain large subunit, C-terminal domain (domain I	87.42
d1ctda_	34	Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	86.69
d1df0a1	186	Calpain large subunit, C-terminal domain (domain I	86.65
d5pala_	109	Parvalbumin {Leopard shark (Triakis semifasciata)	86.35
d2scpa_	174	Sarcoplasmic calcium-binding protein {Sandworm (Ne	86.29
d1s6ja_	87	Calcium-dependent protein kinase sk5 CLD {Soybean	86.29
d2fcea1	61	Calmodulin {Cow (Bos taurus) [TaxId: 9913]}	85.99
d1uhka1	187	Calcium-regulated photoprotein {Jellyfish (Aequore	85.91
d1qjta_	99	Eps15 {Mouse (Mus musculus) [TaxId: 10090]}	85.67
d2jxca1	95	Eps15 {Human (Homo sapiens) [TaxId: 9606]}	85.41
d1exra_	146	Calmodulin {Ciliate (Paramecium tetraurelia) [TaxI	85.29
d1nyaa_	176	Calerythrin {Saccharopolyspora erythraea [TaxId: 1	85.24
d5pala_	109	Parvalbumin {Leopard shark (Triakis semifasciata)	84.97
d1fi6a_	92	Reps1 {Mouse (Mus musculus) [TaxId: 10090]}	84.62
d1rwya_	109	Parvalbumin {Rat (Rattus rattus) [TaxId: 10117]}	84.16
d2obha1	141	Calmodulin {Human (Homo sapiens) [TaxId: 9606]}	83.66
d1zfsa1	93	Calcyclin (S100) {Rat (Rattus norvegicus), s100a1	83.63
d1xo5a_	180	Calcium- and integrin-binding protein, CIB {Human	83.15
d1pvaa_	109	Parvalbumin {Pike (Esox lucius) [TaxId: 8010]}	82.96
d2pvba_	107	Parvalbumin {Pike (Esox lucius) [TaxId: 8010]}	82.8
d1fw4a_	65	Calmodulin {Cow (Bos taurus) [TaxId: 9913]}	82.7
d1c7va_	68	Calcium vector protein {Amphioxus (Branchiostoma l	82.55
d1jfja_	134	EHCABP {Entamoeba (Entamoeba histolytica) [TaxId:	82.44
d2scpa_	174	Sarcoplasmic calcium-binding protein {Sandworm (Ne	82.33
d1w7jb1	139	Myosin Essential Chain {Human (Homo sapiens) [TaxI	82.09
d2pvba_	107	Parvalbumin {Pike (Esox lucius) [TaxId: 8010]}	81.82
d2jxca1	95	Eps15 {Human (Homo sapiens) [TaxId: 9606]}	81.21
d1xo5a_	180	Calcium- and integrin-binding protein, CIB {Human	81.2
d2p7tc1	34	Potassium channel protein {Streptomyces lividans [	80.88
d1jbaa_	189	Guanylate cyclase activating protein 2, GCAP-2 {Co	80.82
d1fi5a_	81	Troponin C {Chicken (Gallus gallus), cardiac isofo	80.76
d1fpwa_	190	Frequenin (neuronal calcium sensor 1) {Baker's yea	80.75
d1wdcc_	152	Myosin Regulatory Chain {Bay scallop (Aequipecten	80.75
d2p7tc1	34	Potassium channel protein {Streptomyces lividans [	80.65
d1m45a_	146	Myosin Light Chain Mlc1p {Baker's yeast (Saccharom	80.58
d1omra_	201	Recoverin {Cow (Bos taurus) [TaxId: 9913]}	80.3
d1lkja_	146	Calmodulin {Baker's yeast (Saccharomyces cerevisia	80.25

>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel protein
species: Streptomyces coelicolor [TaxId: 1902]

Probab=99.78  E-value=5.3e-19  Score=138.02  Aligned_cols=93  Identities=22%  Similarity=0.345  Sum_probs=81.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcCCchhhhhhhhhhhcccccCccccCCccchhHHHHHHHHhHHHHHHh
Q 047952           66 PNFKRVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMF  145 (354)
Q Consensus        66 ~~~~~~~~~l~~~l~~g~~~~~~~e~~~~~~~~~~~~~a~yf~~~t~tTvGyGdi~P~t~~~r~~~~~~~l~Gi~~~~~~  145 (354)
                      +.+...++++++.+++++..+++.|++.++.++.+|.||+||+++|+|||||||++|.|+.||++++++++.|+.++++.
T Consensus         6 r~~~~~~~~~~~~~~~~s~~~~~~e~~~~~~~~~s~~~aly~~~vT~tTvGYGDi~P~t~~gr~~~~~~~~~Gi~~~~~~   85 (103)
T d1r3jc_           6 RAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLV   85 (103)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccCchhhhhhhheeeecccccCccccCChhHHHHHHHHHHHHHHHHHHH
Confidence            44455566666777888888999998777777889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 047952          146 LSKAADYLVDKQE  158 (354)
Q Consensus       146 ~~~~~~~~~~~~~  158 (354)
                      ++.+++.+.++++
T Consensus        86 ~~~i~~~~~~~~~   98 (103)
T d1r3jc_          86 TAALATWFVGREQ   98 (103)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999998876544

>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel protein
species: Streptomyces coelicolor [TaxId: 1902]

Probab=99.74  E-value=1.8e-18  Score=134.98  Aligned_cols=87  Identities=24%  Similarity=0.351  Sum_probs=75.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhc-------CCccccceeeeeeecccccCCcccCCcCchHHHHHHHHHHHHHHHHH
Q 047952          187 YKCIIMLVLELVLILVGTIFLVVVEK-------MSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWISSSTMTLAQF  259 (354)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~e~-------~~~~da~yf~~vT~tTVGyGD~~p~t~~gr~~~~~~i~~g~~~~~~~  259 (354)
                      +.+..++.++++.+++++.+++..|+       .++.||+||+++|+|||||||++|.|+.||++++++++.|++++++.
T Consensus         6 r~~~~~~~~~~~~~~~~s~~~~~~e~~~~~~~~~s~~~aly~~~vT~tTvGYGDi~P~t~~gr~~~~~~~~~Gi~~~~~~   85 (103)
T d1r3jc_           6 RAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLV   85 (103)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccCchhhhhhhheeeecccccCccccCChhHHHHHHHHHHHHHHHHHHH
Confidence            34445555666667788888888886       47899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 047952          260 FLYVAEFNTEKRQK  273 (354)
Q Consensus       260 ~~~i~~~~~~~~~~  273 (354)
                      ++.+++.+.+++++
T Consensus        86 ~~~i~~~~~~~~~~   99 (103)
T d1r3jc_          86 TAALATWFVGREQE   99 (103)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999876553

>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=99.61  E-value=6.1e-19  Score=131.20  Aligned_cols=70  Identities=34%  Similarity=0.347  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHHHHHHhcCCccccceeeeeeecccccCCcccCCcCchHHHHHHHHHHHHHHHHHHHHHHH
Q 047952          196 ELVLILVGTIFLVVVEKMSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWISSSTMTLAQFFLYVAE  265 (354)
Q Consensus       196 ~~~~~~~~~~~~~~~e~~~~~da~yf~~vT~tTVGyGD~~p~t~~gr~~~~~~i~~g~~~~~~~~~~i~~  265 (354)
                      ++.++++|+..++..|+|++.||+||+++|+|||||||++|.++.||++++++++.|++++++.++.+++
T Consensus         9 ~~~~~~~g~~~~~~~e~~s~~dalyf~~~T~tTiGyGD~~P~t~~~r~~~~~~~l~g~~~~~~~i~~i~~   78 (80)
T d1lnqa2           9 VLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLE   78 (80)
T ss_dssp             TTTSHHHHTTTTTTSSSCCSSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHhhheeeccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445678899999999999999999999999999999999999999999999999999999999988765

>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=99.57  E-value=8.1e-18  Score=125.03  Aligned_cols=72  Identities=22%  Similarity=0.480  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHHHHHhhhcccCCCcCCchhhhhhhhhhhcccccCccccCCccchhHHHHHHHHhHHHHHHhHHHHHHH
Q 047952           74 YLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAADY  152 (354)
Q Consensus        74 ~l~~~l~~g~~~~~~~e~~~~~~~~~~~~~a~yf~~~t~tTvGyGdi~P~t~~~r~~~~~~~l~Gi~~~~~~~~~~~~~  152 (354)
                      +++.++++|+..++..|+       |++.||+||+++|+||+||||++|.|+.||++++++++.|+.+++++++.+++.
T Consensus         8 ~~~~~~~~g~~~~~~~e~-------~s~~dalyf~~~T~tTiGyGD~~P~t~~~r~~~~~~~l~g~~~~~~~i~~i~~~   79 (80)
T d1lnqa2           8 LVLAVIIYGTAGFHFIEG-------ESWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEF   79 (80)
T ss_dssp             TTTTSHHHHTTTTTTSSS-------CCSSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHhC-------CCHHHHHHHHhhheeeccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            355667788888888876       899999999999999999999999999999999999999999999999887653

>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Inward rectifier potassium channel kirbac3.1
species: Magnetospirillum magnetotacticum [TaxId: 188]

Probab=99.55  E-value=5.1e-15  Score=117.55  Aligned_cols=75  Identities=24%  Similarity=0.345  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHhhhcccCCCcCCchhhhhhhhhhhcccccCccccCCccchhHHHHHHHHhHHHHHHhHHHHHHHH
Q 047952           79 LGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYL  153 (354)
Q Consensus        79 l~~g~~~~~~~e~~~~~~~~~~~~~a~yf~~~t~tTvGyGdi~P~t~~~r~~~~~~~l~Gi~~~~~~~~~~~~~~  153 (354)
                      .+..+++++..++..++.+.++|.||+||+++|+|||||||++|.++.||++++++++.|+.++++.++.+...+
T Consensus        39 ~~~fa~~y~~~~~~~~~~~~~~~~~a~yfs~~T~tTvGYGDi~P~t~~~r~~~~~~~~~G~~~~a~~~g~i~~~f  113 (116)
T d1xl4a2          39 NALFALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARF  113 (116)
T ss_dssp             HHHHHHHHHHTCSCSTTSCTTCHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHccCCCCccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            334555666666555666778999999999999999999999999999999999999999999999998877655

>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Inward rectifier potassium channel Kirbac1.1
species: Burkholderia pseudomallei [TaxId: 28450]

Probab=99.55  E-value=3.1e-15  Score=118.84  Aligned_cols=74  Identities=20%  Similarity=0.355  Sum_probs=62.2

Q ss_pred             HHHHHHHHHhhhcccCCCcCCchhhhhhhhhhhcccccCccccCCccchhHHHHHHHHhHHHHHHhHHHHHHHH
Q 047952           80 GGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYL  153 (354)
Q Consensus        80 ~~g~~~~~~~e~~~~~~~~~~~~~a~yf~~~t~tTvGyGdi~P~t~~~r~~~~~~~l~Gi~~~~~~~~~~~~~~  153 (354)
                      ++++.+|+..++..++.+.++|.||+||+++|+|||||||++|.++.||+++++.++.|+.++++.++.+.+.+
T Consensus        41 ~~fa~~y~~~~~~~~~~~~~~~~~a~yfs~~T~tTvGYGDi~P~t~~~~~~~~~~~~~g~~~~a~~~g~i~~~~  114 (116)
T d1p7ba2          41 TLFALLYQLGDAPIANQSPPGFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARF  114 (116)
T ss_dssp             HHHHTTTSSSSSCCCCSSSSSTHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcccCCCCCCCHHHHHHHHHHHHHhccccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444455555555566678999999999999999999999999999999999999999999999988877654

>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Inward rectifier potassium channel kirbac3.1
species: Magnetospirillum magnetotacticum [TaxId: 188]

Probab=99.45  E-value=3.7e-14  Score=112.45  Aligned_cols=56  Identities=23%  Similarity=0.195  Sum_probs=52.3

Q ss_pred             CCccccceeeeeeecccccCCcccCCcCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047952          213 MSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWISSSTMTLAQFFLYVAEFNT  268 (354)
Q Consensus       213 ~~~~da~yf~~vT~tTVGyGD~~p~t~~gr~~~~~~i~~g~~~~~~~~~~i~~~~~  268 (354)
                      ++|.||+||+++|+|||||||++|.+..||++++++++.|+.++++.++.+...+.
T Consensus        59 ~~~~~a~yfs~~T~tTvGYGDi~P~t~~~r~~~~~~~~~G~~~~a~~~g~i~~~fs  114 (116)
T d1xl4a2          59 GSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFT  114 (116)
T ss_dssp             TCHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHccCCCCccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            68999999999999999999999999999999999999999999999998876553

>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Inward rectifier potassium channel Kirbac1.1
species: Burkholderia pseudomallei [TaxId: 28450]

Probab=99.43  E-value=2.2e-14  Score=113.81  Aligned_cols=55  Identities=27%  Similarity=0.242  Sum_probs=52.1

Q ss_pred             CCccccceeeeeeecccccCCcccCCcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047952          213 MSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWISSSTMTLAQFFLYVAEFN  267 (354)
Q Consensus       213 ~~~~da~yf~~vT~tTVGyGD~~p~t~~gr~~~~~~i~~g~~~~~~~~~~i~~~~  267 (354)
                      ++|.||+||+++|+|||||||++|.+..||++++++++.|+++++..++.+.+.+
T Consensus        60 ~~~~~a~yfs~~T~tTvGYGDi~P~t~~~~~~~~~~~~~g~~~~a~~~g~i~~~~  114 (116)
T d1p7ba2          60 PGFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARF  114 (116)
T ss_dssp             SSTHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhccccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7899999999999999999999999999999999999999999999999887654

>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel protein
species: Streptomyces coelicolor [TaxId: 1902]

Probab=98.86  E-value=1.4e-09  Score=73.45  Aligned_cols=52  Identities=23%  Similarity=0.213  Sum_probs=42.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcCCchhhhhhhhhhhccccc
Q 047952           66 PNFKRVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGY  117 (354)
Q Consensus        66 ~~~~~~~~~l~~~l~~g~~~~~~~e~~~~~~~~~~~~~a~yf~~~t~tTvGy  117 (354)
                      +.+....+++++.+++++.+.|+.|++.++.++.++.+|+||+++|+|||||
T Consensus         6 R~~~~~~~~~~i~i~~~s~~~y~~E~~~~~~~f~sip~a~WWaivT~TTVGY   57 (57)
T d2h8pc1           6 RAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWACETATTVGY   57 (57)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccchhhhhheeeeecccC
Confidence            3444555666667777888888899888888899999999999999999999

>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel protein
species: Streptomyces coelicolor [TaxId: 1902]

Probab=98.48  E-value=2.4e-08  Score=67.34  Aligned_cols=45  Identities=29%  Similarity=0.580  Sum_probs=33.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhc-------CCccccceeeeeeeccccc
Q 047952          187 YKCIIMLVLELVLILVGTIFLVVVEK-------MSFVDAFYCVCSTITTLGY  231 (354)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~e~-------~~~~da~yf~~vT~tTVGy  231 (354)
                      +.+..+++++++.+++++.+.+..|+       .++.||+||+++|+|||||
T Consensus         6 R~~~~~~~~~~i~i~~~s~~~y~~E~~~~~~~f~sip~a~WWaivT~TTVGY   57 (57)
T d2h8pc1           6 RAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWACETATTVGY   57 (57)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccchhhhhheeeeecccC
Confidence            34445555555666677777777774       5788999999999999998

>d2hf5a1 a.39.1.5 (A:81-113) Troponin C {Human (Homo sapiens), cardiac isoform [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Human (Homo sapiens), cardiac isoform [TaxId: 9606]

Probab=94.50  E-value=0.011  Score=34.32  Aligned_cols=24  Identities=29%  Similarity=0.397  Sum_probs=21.3

Q ss_pred             HHHHHhhhcCCCCCCccChhhhhh
Q 047952          323 LVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       323 ~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      ++.+.|+..|.|+||.|+.+|+.-
T Consensus         4 el~eAF~~FDkDg~G~Is~~EL~~   27 (33)
T d2hf5a1           4 EIREAFRVFDKDGNGYISAAELRH   27 (33)
T ss_dssp             HHHHHHHHHSSSCCSCBCHHHHHH
T ss_pred             HHHHHHHHhCCCCCCcCcHHHHHH
Confidence            567899999999999999999864

>d2pq3a1 a.39.1.5 (A:3-75) Calmodulin {Rattus norvegicus [TaxId: 10116]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Rattus norvegicus [TaxId: 10116]

Probab=94.24  E-value=0.013  Score=40.22  Aligned_cols=32  Identities=31%  Similarity=0.429  Sum_probs=29.3

Q ss_pred             CCHHHHHHHHHHhhhcCCCCCCccChhhhhhc
Q 047952          316 ISQEDIALVMEEFQDLDFDQSGTLSPSDLFLA  347 (354)
Q Consensus       316 ~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~~  347 (354)
                      ++++++.++.+.|...|.|++|.|+.+|+..+
T Consensus         2 Ls~eei~el~~~F~~~D~d~~G~I~~~el~~~   33 (73)
T d2pq3a1           2 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTV   33 (73)
T ss_dssp             CCHHHHHHHHHHHHHTCTTSSSEEEGGGHHHH
T ss_pred             cCHHHHHHHHHHHHHHcCCCCceEeHHHHHHH
Confidence            68899999999999999999999999998654

>d1tiza_ a.39.1.5 (A:) Calmodulin-related protein T21P5.17 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin-related protein T21P5.17
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.20  E-value=0.044  Score=36.73  Aligned_cols=52  Identities=31%  Similarity=0.475  Sum_probs=39.7

Q ss_pred             hhhcccCCCccchHHHHHHHHHHcC-CCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          290 EAADIDEDGVVSAAEFIIYKLKEMG-KISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       290 ~~~~l~~~g~v~~~e~v~~~l~~~~-~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      ..-|.+++|.++..|+... +.+.| .+++++++.+   |...|.|+||.|+.+|..
T Consensus         8 ~~~D~d~~G~I~~~El~~~-l~~lg~~~~~~~i~~~---~~~~D~d~dg~I~~~EF~   60 (67)
T d1tiza_           8 EKFDKNKDGKLSLDEFREV-ALAFSPYFTQEDIVKF---FEEIDVDGNGELNADEFT   60 (67)
T ss_dssp             HHHCTTSSSCEEHHHHHHH-HHHTCTTSCHHHHHHH---HHHHCCSSSSEECHHHHH
T ss_pred             HHHCCCCcCcCcHHHHHHH-HHHhccccchHHHHHH---HHHhCCCCCCeEeHHHHH
Confidence            4557789999999887654 56666 5677776554   666799999999999864

>d2opoa1 a.39.1.10 (A:6-86) Polcalcin Che a 3 {Pigweed (Chenopodium album) [TaxId: 3559]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Polcalcin
domain: Polcalcin Che a 3
species: Pigweed (Chenopodium album) [TaxId: 3559]

Probab=94.16  E-value=0.028  Score=39.40  Aligned_cols=53  Identities=23%  Similarity=0.383  Sum_probs=42.3

Q ss_pred             hhhcccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952          290 EAADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       290 ~~~~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      ..-|.+++|.++..|... .+...|..+++++++   -+.+.|.|++|.|+.++...
T Consensus        13 ~~~D~d~~G~I~~~El~~-~l~~lg~~~~~ei~~---~~~~~D~d~~G~I~~~EF~~   65 (81)
T d2opoa1          13 KRFDTNGDGKISSSELGD-ALKTLGSVTPDEVRR---MMAEIDTDGDGFISFDEFTD   65 (81)
T ss_dssp             HHHCTTCSSEEEHHHHHH-HHHTTTTCCHHHHHH---HHHHHCTTCSSEECHHHHHH
T ss_pred             HHHCCCCCCCCcHHHHHH-HHHHhhcCCHHHHHH---HHHHhCCCCCCeEeHHHHHH
Confidence            456788999999877655 567888888887655   57778999999999999654

>d1f54a_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.08  E-value=0.015  Score=40.32  Aligned_cols=33  Identities=33%  Similarity=0.492  Sum_probs=29.5

Q ss_pred             CCCHHHHHHHHHHhhhcCCCCCCccChhhhhhc
Q 047952          315 KISQEDIALVMEEFQDLDFDQSGTLSPSDLFLA  347 (354)
Q Consensus       315 ~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~~  347 (354)
                      .+++++++++.+.|...|.|++|.|+++|+..+
T Consensus         3 ~lt~eqi~el~~~F~~~D~d~~G~I~~~el~~~   35 (77)
T d1f54a_           3 NLTEEQIAEFKEAFALFDKDNNGSISSSELATV   35 (77)
T ss_dssp             CCCHHHHHHHHHHHHHTCTTCSSEEEHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcCCCCCeEChHHHHHH
Confidence            468899999999999999999999999998653

>d2opoa1 a.39.1.10 (A:6-86) Polcalcin Che a 3 {Pigweed (Chenopodium album) [TaxId: 3559]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Polcalcin
domain: Polcalcin Che a 3
species: Pigweed (Chenopodium album) [TaxId: 3559]

Probab=93.08  E-value=0.023  Score=39.87  Aligned_cols=30  Identities=30%  Similarity=0.335  Sum_probs=27.7

Q ss_pred             CHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952          317 SQEDIALVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       317 ~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      ++++++++.+.|...|.|+||.|+.+++.-
T Consensus         1 T~ee~~e~~~~F~~~D~d~~G~I~~~El~~   30 (81)
T d2opoa1           1 TPQDIADRERIFKRFDTNGDGKISSSELGD   30 (81)
T ss_dssp             CHHHHHHHHHHHHHHCTTCSSEEEHHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCCCCCCcHHHHHH
Confidence            578999999999999999999999999854

>d1avsa_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=93.07  E-value=0.027  Score=39.50  Aligned_cols=32  Identities=31%  Similarity=0.332  Sum_probs=28.7

Q ss_pred             CCCHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952          315 KISQEDIALVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       315 ~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      .+++++++++.+.|...|.|++|.|+++|+.-
T Consensus         7 ~Lt~~~i~el~~~F~~~D~d~~G~I~~~el~~   38 (81)
T d1avsa_           7 FLSEEMIAEFKAAFDMFDADGGGDISTKELGT   38 (81)
T ss_dssp             HBCHHHHHHHHHHHHHHCTTCSSEECHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHcCCCCCeEchhHHHH
Confidence            46889999999999999999999999999754

>d2fcea1 a.39.1.5 (A:84-144) Calmodulin {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.32  E-value=0.13  Score=33.53  Aligned_cols=52  Identities=17%  Similarity=0.433  Sum_probs=40.2

Q ss_pred             hhhcccCCCccchHHHHHHHHHHcC-CCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          290 EAADIDEDGVVSAAEFIIYKLKEMG-KISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       290 ~~~~l~~~g~v~~~e~v~~~l~~~~-~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      ..-|.+++|.++..|+... +...| ..++++++.+   +...|.|++|.++-+|..
T Consensus         8 ~~fD~~~~G~I~~~el~~~-l~~~g~~~~~~ei~~l---~~~~D~d~dg~I~~~eFl   60 (61)
T d2fcea1           8 QVFDKESTGKVSVGDLRYM-LTGLGEKLTDAEVDEL---LKGVEVDSNGEIDYKKFI   60 (61)
T ss_dssp             HHHCTTCCSCEEHHHHHHH-HHHTTCCCCHHHHHHH---HTTCCCCTTSEECHHHHH
T ss_pred             HHHCCCCCCeEeHHHHHHH-HHHcCCCCCHHHHHHH---HHHcCCCCCCcEeHHHhc
Confidence            3557789999998776555 56665 5788887765   678999999999988864

>d1wlza1 a.39.1.7 (A:229-311) DJ-1-binding protein, DJBP {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: EF-hand modules in multidomain proteins
domain: DJ-1-binding protein, DJBP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.14  E-value=0.16  Score=35.26  Aligned_cols=54  Identities=17%  Similarity=0.314  Sum_probs=42.1

Q ss_pred             hhhhcccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          289 LEAADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       289 l~~~~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      .+..|.+++|.|+..|+....-.-...+++++++.+   +..+|.|++|.|+-.|..
T Consensus        26 F~~~D~~~~G~i~~~ef~~~l~~~~~~l~~~e~~~l---~~~~d~~~~g~I~y~eFl   79 (83)
T d1wlza1          26 FENFDTMKTNTISREEFRAICNRRVQILTDEQFDRL---WNEMPVNAKGRLKYPDFL   79 (83)
T ss_dssp             HHHHCTTCSSCBCHHHHHHHHHHHTCCCCHHHHHHH---HTTSCBCTTSCBCHHHHH
T ss_pred             HHHHCCCCCceEChhHHHHHHHHhCCCCChhHHHHH---hhccccCCCCcEeHHHHH
Confidence            356678899999998877754434447888888665   788899999999998865

>d1jfja_ a.39.1.5 (A:) EHCABP {Entamoeba (Entamoeba histolytica) [TaxId: 5759]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: EHCABP
species: Entamoeba (Entamoeba histolytica) [TaxId: 5759]

Probab=91.79  E-value=0.043  Score=41.32  Aligned_cols=57  Identities=19%  Similarity=0.274  Sum_probs=43.3

Q ss_pred             hhhcccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952          290 EAADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       290 ~~~~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      ...|.+++|.|+..||+...-..........-..+...|+..|.|++|.|+++++.-
T Consensus        43 ~~~D~~~~g~i~~~Ef~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~   99 (134)
T d1jfja_          43 KSIDADGNGEIDQNEFAKFYGSIQGQDLSDDKIGLKVLYKLMDVDGDGKLTKEEVTS   99 (134)
T ss_dssp             HHHCSSCCSEEEHHHHHHHTTCSSCCSSHHHHHHHHHHHHHHCCSSSSEEEHHHHHH
T ss_pred             HHhhhcccccccccccccccccccccccccccccccccccccccccCCcccHHHHHH
Confidence            345678889999988877654444555666667778889999999999999998754

>d1ggwa_ a.39.1.5 (A:) Cdc4p {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Cdc4p
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=91.47  E-value=0.034  Score=42.94  Aligned_cols=63  Identities=17%  Similarity=0.173  Sum_probs=35.8

Q ss_pred             cccccchhhhcccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          283 KMTHVDLEAADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       283 ~~~~~~l~~~~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      .++..++...+.+++|.++-.+|+...-.....-.+...+.+.+.|...|.|++|.|+.+|+.
T Consensus        37 ~~t~~ei~~~~~~~~~~i~~~eF~~~~~~~~~~~~~~~~~~l~~aF~~~D~d~~G~I~~~el~   99 (140)
T d1ggwa_          37 NPTLAEITEIESTLPAEVDMEQFLQVLNRPNGFDMPGDPEEFVKGFQVFDKDATGMIGVGELR   99 (140)
T ss_dssp             CCCHHHHHHHHTTSCSSEEHHHHHHHHCTTSSSSSSCCHHHHHHHHHTTCSSCSSCCCHHHHH
T ss_pred             hhHHHhhhhhhccccccccchhhhhhhhhhhhcchhhHHHHHHHHHHHHhccCCCcchHHHHH
Confidence            444444444445566677766666544333333333334445667777777777777777764

>d1wdcb_ a.39.1.5 (B:) Myosin Essential Chain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Myosin Essential Chain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=91.18  E-value=0.11  Score=39.86  Aligned_cols=62  Identities=13%  Similarity=0.105  Sum_probs=42.9

Q ss_pred             cccccchhhhcccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952          283 KMTHVDLEAADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       283 ~~~~~~l~~~~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      .++..++....-+++|.++-.+|+.....+......+  +.+.+.|...|.|++|.|+.+|+.-
T Consensus        39 ~~~~~el~~~~~~~~~~i~~~eF~~~~~~~~~~~~~~--~~l~~aF~~~D~d~~G~I~~~el~~  100 (142)
T d1wdcb_          39 APDDKELTAMLKEAPGPLNFTMFLSIFSDKLSGTDSE--ETIRNAFAMFDEQETKKLNIEYIKD  100 (142)
T ss_dssp             CCCHHHHHHHHTTSSSCCCHHHHHHHHHHHTCSCCCH--HHHHHHHHTTCTTCCSCEEHHHHHH
T ss_pred             CCCHHHHHHHHHhccCccccccccccccccccccchh--hhHHHhhhhhcccCCCcccHHHHHH
Confidence            3444444443345778888888888776665554432  3556789999999999999999754

>d1oqpa_ a.39.1.5 (A:) Caltractin (centrin 2) {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Caltractin (centrin 2)
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=90.91  E-value=0.21  Score=34.04  Aligned_cols=52  Identities=15%  Similarity=0.375  Sum_probs=39.1

Q ss_pred             hhhcccCCCccchHHHHHHHHHHcC-CCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          290 EAADIDEDGVVSAAEFIIYKLKEMG-KISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       290 ~~~~l~~~g~v~~~e~v~~~l~~~~-~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      ..-|.+++|.++..|+.. .|.+.+ .++.+++..+   |.+.|.|++|.|+-+|..
T Consensus        16 ~~~D~d~~G~I~~~el~~-~l~~~g~~~~~~e~~~~---~~~~D~d~~G~I~~~EF~   68 (77)
T d1oqpa_          16 RLFDDDNSGTITIKDLRR-VAKELGENLTEEELQEM---IAEADRNDDNEIDEDEFI   68 (77)
T ss_dssp             HHHCTTCSSSEEHHHHHH-HHHHHTCCCCHHHHHHH---HHHHCCSSSSEECHHHHH
T ss_pred             HHHcCCCCCEechHHHHH-HHHHhCCCCCHHHHHHH---HHHhCCCCCCcEeHHHHH
Confidence            345778999999877654 456665 5677777665   667899999999999853

>d1avsa_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=90.44  E-value=0.16  Score=35.23  Aligned_cols=52  Identities=23%  Similarity=0.440  Sum_probs=38.8

Q ss_pred             hhhcccCCCccchHHHHHHHHHHcC-CCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          290 EAADIDEDGVVSAAEFIIYKLKEMG-KISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       290 ~~~~l~~~g~v~~~e~v~~~l~~~~-~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      ..-|.+++|.++..|.. ..|...| ..++++++++   +.+.|.|++|.++-++..
T Consensus        21 ~~~D~d~~G~I~~~el~-~~l~~~g~~~s~~e~~~~---~~~~D~d~~g~I~~~eF~   73 (81)
T d1avsa_          21 DMFDADGGGDISTKELG-TVMRMLGQNPTKEELDAI---IEEVDEDGSGTIDFEEFL   73 (81)
T ss_dssp             HHHCTTCSSEECHHHHH-HHHHHTTCCCCHHHHHHH---HHHHCTTCCSSEEHHHHH
T ss_pred             HHHcCCCCCeEchhHHH-HHHHHcCCCCCHHHHHHH---HHHhCCCCCCeEeHHHHH
Confidence            34577899999987764 4455666 5777777665   666799999999998854

>d1fi5a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus), cardiac isoform [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus), cardiac isoform [TaxId: 9031]

Probab=90.36  E-value=0.15  Score=35.31  Aligned_cols=52  Identities=25%  Similarity=0.471  Sum_probs=39.0

Q ss_pred             hhhcccCCCccchHHHHHHHHHHcC-CCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          290 EAADIDEDGVVSAAEFIIYKLKEMG-KISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       290 ~~~~l~~~g~v~~~e~v~~~l~~~~-~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      ..-|.+++|.++..|+... +...| ..+.++++.+   +.+.|.|+||.|+-+|..
T Consensus        22 ~~~D~d~~G~I~~~el~~~-l~~~g~~~~~~ev~~~---~~~~D~d~dg~I~~~EF~   74 (81)
T d1fi5a_          22 RMFDKNADGYIDLEELKIM-LQATGETITEDDIEEL---MKDGDKNNDGRIDYDEFL   74 (81)
T ss_dssp             HHHCSSCSSEECHHHHHHH-HHTSSSCCCHHHHHHH---HHHHCSSSSSSEEHHHHH
T ss_pred             HHHcCCCCCcccHHHHHHH-HHhcCCCCCHHHHHHH---HHHHCCCCCCcEeHHHHH
Confidence            3457789999998776554 55555 5778877765   556799999999999864

>d1fi6a_ a.39.1.6 (A:) Reps1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Eps15 homology domain (EH domain)
domain: Reps1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.30  E-value=0.088  Score=37.64  Aligned_cols=30  Identities=20%  Similarity=0.304  Sum_probs=21.3

Q ss_pred             CCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          316 ISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       316 ~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      +++++.+.+.+.|+.+|.|++|.++.+++.
T Consensus         3 ls~ee~~~y~~~F~~~D~d~~G~i~~~e~~   32 (92)
T d1fi6a_           3 ITDEQRQYYVNQFKTIQPDLNGFIPGSAAK   32 (92)
T ss_dssp             CCHHHHHHHHHHHTTTCCSTTCEEEHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCcccchhHHHHH
Confidence            566777777777777777777777776654

>d1exra_ a.39.1.5 (A:) Calmodulin {Ciliate (Paramecium tetraurelia) [TaxId: 5888]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Ciliate (Paramecium tetraurelia) [TaxId: 5888]

Probab=90.18  E-value=0.21  Score=38.08  Aligned_cols=53  Identities=21%  Similarity=0.366  Sum_probs=40.0

Q ss_pred             hhhcccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          290 EAADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       290 ~~~~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      ...|.+++|.++..|+......-...+++++++.+   |...|.|+||.|+.+|..
T Consensus        89 ~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~i---~~~~D~d~dG~i~~~eF~  141 (146)
T d1exra_          89 KVFDRDGNGLISAAELRHVMTNLGEKLTDDEVDEM---IREADIDGDGHINYEEFV  141 (146)
T ss_dssp             HHHSTTCSSCBCHHHHHHHHHHTTCCCCHHHHHHH---HHHHCSSSSSSBCHHHHH
T ss_pred             HHhCCCCCCcCCHHHHHHHHHHHhhcCCHHHHHHH---HHHhCCCCCCeEeHHHHH
Confidence            45577899999998876554444446788888776   556688999999998863

>d1jc2a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=90.14  E-value=0.21  Score=34.06  Aligned_cols=51  Identities=24%  Similarity=0.408  Sum_probs=38.8

Q ss_pred             hhcccCCCccchHHHHHHHHHHcC-CCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          291 AADIDEDGVVSAAEFIIYKLKEMG-KISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       291 ~~~l~~~g~v~~~e~v~~~l~~~~-~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      .-|.+++|.++..|+ ...|...| ..+.++++.+   +.+.|.|++|.|+-+|..
T Consensus        17 ~fD~~~~G~I~~~el-~~~l~~lg~~~~~~e~~~~---~~~~D~d~dg~I~~~EF~   68 (75)
T d1jc2a_          17 IFDKNADGFIDIEEL-GEILRATGEHVIEEDIEDL---MKDSDKNNDGRIDFDEFL   68 (75)
T ss_dssp             HHCCSTTSSEEHHHH-HHHHHHSSSCCCHHHHHHH---HHHHCSSSCSEECHHHHH
T ss_pred             HHcCCCcCeEcHHHH-HHHHHhcCCCccHHHHHHH---HHHhCCCCCCcEeHHHHH
Confidence            456789999998775 44466666 5677777665   567799999999999864

>d2mysc_ a.39.1.5 (C:) Myosin Regulatory Chain {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Myosin Regulatory Chain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=89.77  E-value=0.11  Score=39.76  Aligned_cols=49  Identities=16%  Similarity=0.237  Sum_probs=21.8

Q ss_pred             CCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhh
Q 047952          296 EDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDL  344 (354)
Q Consensus       296 ~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~  344 (354)
                      +.|.++-.||+.........-.....+.+.+.|..+|.|++|.|+.+|+
T Consensus        55 ~~g~i~~~eF~~~~~~~~~~~~~~~~~~l~~aF~~~D~d~~G~I~~~el  103 (145)
T d2mysc_          55 NAAAITFEEFLPMLQAAANNKDQGTFEDFVEGLRVFDKEGNGTVMGAEL  103 (145)
T ss_pred             ccCccchhHHHHHHhhhhhccccchHHHHHHHHHHhhcCCCCEEcHHHH
Confidence            3444544444433322222222223333445555555555555555554

>d1k94a_ a.39.1.8 (A:) Grancalcin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Grancalcin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.69  E-value=0.2  Score=39.71  Aligned_cols=47  Identities=28%  Similarity=0.290  Sum_probs=38.9

Q ss_pred             hcccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhhhc
Q 047952          292 ADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFLA  347 (354)
Q Consensus       292 ~~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~~  347 (354)
                      .|.+++|.++-.||+...         +.++.+.+.|...|.|++|.|+.+|+.-+
T Consensus        49 ~D~~~~G~i~~~EF~~l~---------~~~~~~~~~F~~fD~d~sG~I~~~El~~~   95 (165)
T d1k94a_          49 LDRDHTGKMGFNAFKELW---------AALNAWKENFMTVDQDGSGTVEHHELRQA   95 (165)
T ss_dssp             HCTTCSSCBCHHHHHHHH---------HHHHHHHHHHHHHCTTCCSBCCHHHHHHH
T ss_pred             hCCCCCCcCcHHHHHHHh---------hccchhHHHHHHhCCCCCCeEcHHHHHHH
Confidence            467899999999997643         34677888999999999999999998643

>d1snla_ a.39.1.7 (A:) Nucleobindin 1 (CALNUC) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: EF-hand modules in multidomain proteins
domain: Nucleobindin 1 (CALNUC)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.36  E-value=0.17  Score=36.39  Aligned_cols=57  Identities=19%  Similarity=0.258  Sum_probs=38.0

Q ss_pred             hhhcccCCCccchHHHHHHHHHHc---CC---------CCHHHHH-HHHHHhhhcCCCCCCccChhhhhh
Q 047952          290 EAADIDEDGVVSAAEFIIYKLKEM---GK---------ISQEDIA-LVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       290 ~~~~l~~~g~v~~~e~v~~~l~~~---~~---------~~~~~l~-~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      ...|.+++|.++..|+....-...   ..         ...+..+ .+.+-|.+.|.|+||.||.++..-
T Consensus        23 ~~~D~DgdG~i~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~D~d~DG~Is~~EF~~   92 (99)
T d1snla_          23 ILHDINSDGVLDEQELEALFTKELEKVYDPKNEEDDMREMEEERLRMREHVMKNVDTNQDRLVTLEEFLA   92 (99)
T ss_dssp             HHHCSSCCSEEEHHHHHHHHHHHHHTTSCCSSCSSHHHHTTHHHHHHHHHHHHHTCSSCSSEEEHHHHHH
T ss_pred             HHHCCCCCCcCCHHHHHHHHHHHHHhcchhhhhhhhhhhhHHHHHHHHHHHHHHcCCCCCCcCcHHHHHH
Confidence            456788999999988655432211   10         1122233 345669999999999999999764

>d1fw4a_ a.39.1.5 (A:) Calmodulin {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=89.19  E-value=0.27  Score=32.33  Aligned_cols=52  Identities=25%  Similarity=0.491  Sum_probs=38.8

Q ss_pred             hhhcccCCCccchHHHHHHHHHHcC-CCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          290 EAADIDEDGVVSAAEFIIYKLKEMG-KISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       290 ~~~~l~~~g~v~~~e~v~~~l~~~~-~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      ..-|.+++|.++..|+.. .+.+.| .+++++++.+   +...|.|++|.|+-+|..
T Consensus        10 ~~fD~d~~G~I~~~el~~-~l~~lg~~~~~~e~~~l---~~~~D~d~~g~I~~~eF~   62 (65)
T d1fw4a_          10 RVFDKDGNGYISAAELRH-VMTNLGEKLTDEEVDEM---IREADIDGDGQVNYEEFV   62 (65)
T ss_dssp             HHHCTTCSSEECHHHHHH-HHHHTTCCCCHHHHHHH---HHTTCTTCSSSEEHHHHH
T ss_pred             HHHcCCCCCcCCHHHHHH-HHHHhCCCCCHHHHHHH---HHHcCCCCCCcEeHHHHH
Confidence            345678999999887644 466766 5677777665   666799999999988753

>d1s6ja_ a.39.1.5 (A:) Calcium-dependent protein kinase sk5 CLD {Soybean (Glycine max) [TaxId: 3847]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium-dependent protein kinase sk5 CLD
species: Soybean (Glycine max) [TaxId: 3847]

Probab=89.16  E-value=0.24  Score=34.84  Aligned_cols=52  Identities=25%  Similarity=0.469  Sum_probs=39.3

Q ss_pred             hhhcccCCCccchHHHHHHHHHHcC-CCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          290 EAADIDEDGVVSAAEFIIYKLKEMG-KISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       290 ~~~~l~~~g~v~~~e~v~~~l~~~~-~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      ...|.+++|.++..|. ...+...| .+++++++++   +.+.|.|++|.|+-+|..
T Consensus        30 ~~~D~d~~G~I~~~el-~~~l~~lg~~~s~~e~~~l---~~~~D~d~~g~I~~~EFl   82 (87)
T d1s6ja_          30 KMIDTDNSGTITFDEL-KDGLKRVGSELMESEIKDL---MDAADIDKSGTIDYGEFI   82 (87)
T ss_dssp             HHHCTTCSSCEEHHHH-HHHHHTTTSSCCHHHHHHH---HHHHCTTCSSEECHHHHT
T ss_pred             HHHcCCCCCcCcHHHH-HHHHHHcCCCCCHHHHHHH---HHHcCCCCCCeEeHHHHH
Confidence            4446679999998885 44466666 4777777664   677799999999999875

>d1qv0a_ a.39.1.5 (A:) Calcium-regulated photoprotein {Hydrozoa (Obelia longissima), obelin [TaxId: 32570]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium-regulated photoprotein
species: Hydrozoa (Obelia longissima), obelin [TaxId: 32570]

Probab=89.11  E-value=0.19  Score=40.07  Aligned_cols=52  Identities=31%  Similarity=0.461  Sum_probs=36.9

Q ss_pred             hhhcccCCCccchHHHHHHHHHHcC-CCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          290 EAADIDEDGVVSAAEFIIYKLKEMG-KISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       290 ~~~~l~~~g~v~~~e~v~~~l~~~~-~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      ..-|.+++|.++..|+... +...| ..+.++++.   -|..+|.|+||.|+.+|+.
T Consensus       114 ~~~D~d~~G~is~~E~~~~-l~~~g~~~~~~~~~~---lf~~~D~d~dG~Is~~EF~  166 (189)
T d1qv0a_         114 DIFDKDGSGTITLDEWKAY-GKISGISPSQEDCEA---TFRHCDLDNAGDLDVDEMT  166 (189)
T ss_dssp             HHTC----CEECHHHHHHH-HHHHSSCCCHHHHHH---HHHHSCCCTTSCEEHHHHH
T ss_pred             HHHccCCCCcccchhhHHH-HHhcCCCCCHHHHHH---HHHHhCCCCCCcEeHHHHH
Confidence            3457789999999887666 55555 477777655   4778899999999999974

>d2pq3a1 a.39.1.5 (A:3-75) Calmodulin {Rattus norvegicus [TaxId: 10116]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Rattus norvegicus [TaxId: 10116]

Probab=89.11  E-value=0.23  Score=33.49  Aligned_cols=52  Identities=19%  Similarity=0.418  Sum_probs=38.7

Q ss_pred             hhhcccCCCccchHHHHHHHHHHcC-CCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          290 EAADIDEDGVVSAAEFIIYKLKEMG-KISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       290 ~~~~l~~~g~v~~~e~v~~~l~~~~-~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      ..-|-+++|.++..|.. ..+...| .++++++.++   +...|.|++|.|+-+|..
T Consensus        15 ~~~D~d~~G~I~~~el~-~~l~~~g~~~s~~~~~~~---~~~~D~d~~g~I~f~eF~   67 (73)
T d2pq3a1          15 SLFDKDGDGTITTKELG-TVMRSLGQNPTEAELQDM---INEVDADGNGTIDFPEFL   67 (73)
T ss_dssp             HHTCTTSSSEEEGGGHH-HHHHHTTCCCCHHHHHHH---HHHHCTTCSSEEEHHHHH
T ss_pred             HHHcCCCCceEeHHHHH-HHHHHhCCCCCHHHHHHH---HHHhCCCCCCeEeHHHHH
Confidence            34567899999988854 4456666 4778777665   556699999999998864

>d1c07a_ a.39.1.6 (A:) Eps15 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Eps15 homology domain (EH domain)
domain: Eps15
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.02  E-value=0.27  Score=35.13  Aligned_cols=51  Identities=24%  Similarity=0.239  Sum_probs=38.0

Q ss_pred             hhhcccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          290 EAADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       290 ~~~~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      ...|.+++|.++..|... .+.+. .+..++++++   ++..|.|+||.|+.++..
T Consensus        17 ~~~D~d~~G~is~~e~~~-~l~~~-~l~~~~l~~i---~~~~D~d~dG~l~~~EF~   67 (95)
T d1c07a_          17 LKTDKDMDGFVSGLEVRE-IFLKT-GLPSTLLAHI---WSLCDTKDCGKLSKDQFA   67 (95)
T ss_dssp             HHHCTTCSSEECHHHHHH-HHHTT-TCCHHHHHHH---HHHHCTTCSSSEETTTHH
T ss_pred             HHHCCCCCCCCcHHHHHH-HHHhc-CCCHHHHHHH---HHHhCCCCCCeEcHHHHH
Confidence            455788999999877544 34444 4778777654   666799999999999964

>d1f54a_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.45  E-value=0.32  Score=33.08  Aligned_cols=52  Identities=19%  Similarity=0.400  Sum_probs=38.9

Q ss_pred             hhhcccCCCccchHHHHHHHHHHcC-CCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          290 EAADIDEDGVVSAAEFIIYKLKEMG-KISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       290 ~~~~l~~~g~v~~~e~v~~~l~~~~-~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      ..-|.+++|.++..|.-.. |...| ..+.+++.+   -+..+|.|++|.|+-++..
T Consensus        17 ~~~D~d~~G~I~~~el~~~-l~~~g~~~t~~e~~~---~~~~~D~~~~g~I~~~eF~   69 (77)
T d1f54a_          17 ALFDKDNNGSISSSELATV-MRSLGLSPSEAEVND---LMNEIDVDGNHQIEFSEFL   69 (77)
T ss_dssp             HHTCTTCSSEEEHHHHHHH-HHHHTCCCCHHHHHH---HHHTTCCSSCCEEEHHHHH
T ss_pred             HHHcCCCCCeEChHHHHHH-HHHhCCCCCHHHHHH---HHHHhCCCCCCeEeHHHHH
Confidence            4557789999998876554 56666 466777655   5667799999999999864

>d1topa_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=88.40  E-value=0.28  Score=38.08  Aligned_cols=52  Identities=23%  Similarity=0.432  Sum_probs=38.9

Q ss_pred             hhhcccCCCccchHHHHHHHHHHcC-CCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          290 EAADIDEDGVVSAAEFIIYKLKEMG-KISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       290 ~~~~l~~~g~v~~~e~v~~~l~~~~-~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      ...|.+++|.++..|+... +.+.+ ..+.++++.+   |...|.|+||.|+.+|..
T Consensus       103 ~~~D~d~~G~Is~~e~~~~-l~~~~~~~~~~~~~~l---~~~~D~d~dG~Is~~EF~  155 (162)
T d1topa_         103 RIFDKNADGFIDIEELGEI-LRATGEHVTEEDIEDL---MKDSDKNNDGRIDFDEFL  155 (162)
T ss_dssp             HHHCTTCSSCBCHHHHHHH-HHTTTCCCCHHHHHHH---HHHHCTTCSSSBCHHHHH
T ss_pred             HHHCCCCCCCCcHHHHHHH-HHhhCCCCCHHHHHHH---HHHhCCCCCCcEEHHHHH
Confidence            4567899999999886544 45554 5666666555   777789999999999864

>d1wrka1 a.39.1.5 (A:4-85) Troponin C {Human (Homo sapiens), cardiac isoform [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Human (Homo sapiens), cardiac isoform [TaxId: 9606]

Probab=88.04  E-value=0.19  Score=35.02  Aligned_cols=33  Identities=15%  Similarity=0.243  Sum_probs=26.5

Q ss_pred             CCCHHHHHHHHHHhhhcCCCC-CCccChhhhhhc
Q 047952          315 KISQEDIALVMEEFQDLDFDQ-SGTLSPSDLFLA  347 (354)
Q Consensus       315 ~~~~~~l~~i~~~f~~ld~~~-~g~l~~~d~~~~  347 (354)
                      .+++++++.+.+.|+..|.|+ +|.|+..|+.-+
T Consensus         8 ~ls~eq~~~~~~~F~~fD~d~~~G~I~~~el~~~   41 (82)
T d1wrka1           8 QLTEEQKNEFKAAFDIFVLGAEDGSISTKELGKV   41 (82)
T ss_dssp             HCCHHHHHHHHHHHHHHTTTCTTSSBCHHHHHHH
T ss_pred             hCCHHHHHHHHHHHHHHcCcCCCCeEeHHHHHHH
Confidence            577888888888888888884 788888887643

>d1pvaa_ a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [TaxId: 8010]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Parvalbumin
species: Pike (Esox lucius) [TaxId: 8010]

Probab=88.03  E-value=0.19  Score=37.12  Aligned_cols=49  Identities=22%  Similarity=0.427  Sum_probs=36.2

Q ss_pred             cccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952          293 DIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       293 ~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      +.+++|.++-.||+...  .....++++   +.+.|...|.|++|.|+.+|+..
T Consensus        17 ~~d~dG~idf~EF~~~~--~~~~~~~~~---~~~~F~~~D~d~~G~I~~~El~~   65 (109)
T d1pvaa_          17 AVKAEGSFNHKKFFALV--GLKAMSAND---VKKVFKAIDADASGFIEEEELKF   65 (109)
T ss_dssp             HTCSTTCCCHHHHHHHH--TCTTSCHHH---HHHHHHHHCTTCSSSBCHHHHHT
T ss_pred             hcCCCCCCcHHHHHHHH--HHccCCHHH---HHHHhhCccCCCcCeEcHHHHHH
Confidence            35788899999997542  223334444   45689999999999999999854

>d1c07a_ a.39.1.6 (A:) Eps15 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Eps15 homology domain (EH domain)
domain: Eps15
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.71  E-value=0.13  Score=36.90  Aligned_cols=31  Identities=26%  Similarity=0.176  Sum_probs=27.9

Q ss_pred             CCHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952          316 ISQEDIALVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       316 ~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      +++++.+++.+.|+.+|.|++|.|+.+++.-
T Consensus         4 lt~~e~~~~~~~F~~~D~d~~G~is~~e~~~   34 (95)
T d1c07a_           4 VSPAEKAKYDEIFLKTDKDMDGFVSGLEVRE   34 (95)
T ss_dssp             SCSHHHHHHHHHHHHHCTTCSSEECHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCCCcHHHHHH
Confidence            6788999999999999999999999998754

>d1wrka1 a.39.1.5 (A:4-85) Troponin C {Human (Homo sapiens), cardiac isoform [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Human (Homo sapiens), cardiac isoform [TaxId: 9606]

Probab=87.66  E-value=0.56  Score=32.42  Aligned_cols=51  Identities=22%  Similarity=0.385  Sum_probs=37.5

Q ss_pred             hhcccC-CCccchHHHHHHHHHHcCC-CCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          291 AADIDE-DGVVSAAEFIIYKLKEMGK-ISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       291 ~~~l~~-~g~v~~~e~v~~~l~~~~~-~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      .-|.++ +|.++..|... .|.+.|. .+.++++++   +.+.|.|++|.|+-+|..
T Consensus        23 ~fD~d~~~G~I~~~el~~-~l~~lg~~~t~~el~~~---i~~~D~d~~G~I~f~eFl   75 (82)
T d1wrka1          23 IFVLGAEDGSISTKELGK-VMRMLGQNPTPEELQEM---IDEVDEDGSGTVDFDEFL   75 (82)
T ss_dssp             HHTTTCTTSSBCHHHHHH-HHHHTTCCCCHHHHHHH---HHTTCTTCCSSBCHHHHH
T ss_pred             HHcCcCCCCeEeHHHHHH-HHHHcCCCCCHHHHHHH---HHHhCCCCCCeEeHHHHH
Confidence            334564 68999877655 5677774 778777776   556789999999999864

>d1qxpa2 a.39.1.8 (A:515-702) Calpain large subunit, C-terminal domain (domain IV) {Rat (Rattus norvegicus), mu-type [TaxId: 10116]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Calpain large subunit, C-terminal domain (domain IV)
species: Rat (Rattus norvegicus), mu-type [TaxId: 10116]

Probab=87.42  E-value=0.2  Score=40.71  Aligned_cols=48  Identities=29%  Similarity=0.458  Sum_probs=34.4

Q ss_pred             hhcccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhhhc
Q 047952          291 AADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFLA  347 (354)
Q Consensus       291 ~~~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~~  347 (354)
                      ..|.+++|.++-.||....         +.++.+.+.|...|.|+||.|+.+|+.-+
T Consensus        71 ~~D~d~~G~i~~~EF~~l~---------~~~~~~~~~F~~~D~d~sG~i~~~El~~~  118 (188)
T d1qxpa2          71 LMDRDGNGKLGLVEFNILW---------NRIRNYLTIFRKFDLDKSGSMSAYEMRMA  118 (188)
T ss_dssp             HHCC--CCCCCSSSHHHHH---------HHHHHHHHHHGGGCTTCCSCCBHHHHHHH
T ss_pred             HhcCCCCCcccHHHHHHHH---------hhhHHHHHHHHHhCCCCCCEECHHHHHHH
Confidence            4466788888877776532         34567778899999999999999887543

>d1ctda_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=86.69  E-value=0.26  Score=27.50  Aligned_cols=24  Identities=17%  Similarity=0.198  Sum_probs=19.9

Q ss_pred             HHHHHhhhcCCCCCCccChhhhhh
Q 047952          323 LVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       323 ~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      ++.+-|...|.|.||.|+.+++..
T Consensus         5 ELae~FRifDkNaDGyiD~eEl~~   28 (34)
T d1ctda_           5 ELANAFRIFDKNADGYIDIEELGE   28 (34)
T ss_dssp             HHHHHHHTTCCSSSSCBCHHHHHH
T ss_pred             HHHHHHHHHccCCcccccHHHHHH
Confidence            445678899999999999998753

>d1df0a1 a.39.1.8 (A:515-700) Calpain large subunit, C-terminal domain (domain IV) {Rat (Rattus norvegicus), M-type [TaxId: 10116]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Penta-EF-hand proteins
domain: Calpain large subunit, C-terminal domain (domain IV)
species: Rat (Rattus norvegicus), M-type [TaxId: 10116]

Probab=86.65  E-value=0.3  Score=39.11  Aligned_cols=49  Identities=27%  Similarity=0.415  Sum_probs=37.6

Q ss_pred             hhhcccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhhhc
Q 047952          290 EAADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFLA  347 (354)
Q Consensus       290 ~~~~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~~  347 (354)
                      ...|.+++|.++-.||+...         ..++.+...|...|.|+||.|+.+|+.-+
T Consensus        68 ~~~D~d~~G~I~~~EF~~~~---------~~~~~~~~~F~~~D~d~sG~I~~~El~~~  116 (186)
T d1df0a1          68 DMLDEDGSGKLGLKEFYILW---------TKIQKYQKIYREIDVDRSGTMNSYEMRKA  116 (186)
T ss_dssp             HHHCCSSSSEECHHHHHHHH---------HHHHHHHHHHHHHCTTCCSCEEGGGHHHH
T ss_pred             HHHcCCCCCcccHHHHHHHH---------HhHHHHHHHHHhhCCCCCCcccHHHHHHH
Confidence            34567888899988887653         34566778899999999999999887653

>d5pala_ a.39.1.4 (A:) Parvalbumin {Leopard shark (Triakis semifasciata) [TaxId: 30493]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Parvalbumin
species: Leopard shark (Triakis semifasciata) [TaxId: 30493]

Probab=86.35  E-value=0.43  Score=35.01  Aligned_cols=47  Identities=26%  Similarity=0.322  Sum_probs=33.8

Q ss_pred             ccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          294 IDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       294 l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      .+++|.++-.||+...  .....+++   .+.+.|...|.|++|.|+.+|+.
T Consensus        18 ~~~~G~idf~eF~~~~--~~~~~~~~---~l~~~F~~~D~d~~G~I~~~El~   64 (109)
T d5pala_          18 FKDPGTFDYKRFFHLV--GLKGKTDA---QVKEVFEILDKDQSGFIEEEELK   64 (109)
T ss_dssp             TCSTTCCCHHHHHHHH--TCTTCCHH---HHHHHHHHHCTTCSSEECHHHHH
T ss_pred             cCCCCcCcHHHHHHHH--HhcCCCHH---HHHHHHhhhcCCCCCeEcHHHHH
Confidence            4567888888887532  22233444   45678999999999999999975

>d2scpa_ a.39.1.5 (A:) Sarcoplasmic calcium-binding protein {Sandworm (Nereis diversicolor) [TaxId: 126592]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Sarcoplasmic calcium-binding protein
species: Sandworm (Nereis diversicolor) [TaxId: 126592]

Probab=86.29  E-value=0.26  Score=38.61  Aligned_cols=52  Identities=25%  Similarity=0.437  Sum_probs=39.7

Q ss_pred             hhhcccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952          290 EAADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       290 ~~~~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      ...|.+++|.++..|+.. .+...+ ++.++++   ..|...|.|+||.|+.+|..-
T Consensus       101 ~~~D~d~dG~Is~~E~~~-~l~~~~-~~~~~~~---~~f~~~D~d~dG~Is~~Ef~~  152 (174)
T d2scpa_         101 RAVDTNEDNNISRDEYGI-FFGMLG-LDKTMAP---ASFDAIDTNNDGLLSLEEFVI  152 (174)
T ss_dssp             HHHCTTCSSSEEHHHHHH-HHHHTT-CCGGGHH---HHHHHHCTTCSSEECHHHHHH
T ss_pred             HHHCCCccccCCHHHHHH-HHHHHh-hhhHHHH---HHHhhcCCCCCCcEeHHHHHH
Confidence            466789999999998765 355555 4555554   458888999999999999754

>d1s6ja_ a.39.1.5 (A:) Calcium-dependent protein kinase sk5 CLD {Soybean (Glycine max) [TaxId: 3847]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium-dependent protein kinase sk5 CLD
species: Soybean (Glycine max) [TaxId: 3847]

Probab=86.29  E-value=0.027  Score=40.09  Aligned_cols=33  Identities=33%  Similarity=0.446  Sum_probs=28.7

Q ss_pred             CCCCHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952          314 GKISQEDIALVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       314 ~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      ..++++++..+.+.|..+|.|++|.|+.+|+.-
T Consensus        15 ~~l~~~~i~~l~~~F~~~D~d~~G~I~~~el~~   47 (87)
T d1s6ja_          15 ERLSEEEIGGLKELFKMIDTDNSGTITFDELKD   47 (87)
T ss_dssp             SSSCSSSTTTTTTHHHHHCTTCSSCEEHHHHHH
T ss_pred             hhCCHHHHHHHHHHHHHHcCCCCCcCcHHHHHH
Confidence            357778888889999999999999999999764

>d2fcea1 a.39.1.5 (A:84-144) Calmodulin {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=85.99  E-value=0.16  Score=33.14  Aligned_cols=25  Identities=28%  Similarity=0.379  Sum_probs=21.8

Q ss_pred             HHHHHHhhhcCCCCCCccChhhhhh
Q 047952          322 ALVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       322 ~~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      +++++.|...|.|++|.|+.+++.-
T Consensus         1 Eel~~aF~~fD~~~~G~I~~~el~~   25 (61)
T d2fcea1           1 EDFVKAFQVFDKESTGKVSVGDLRY   25 (61)
T ss_dssp             HHHHHHHHHHCTTCCSCEEHHHHHH
T ss_pred             ChHHHHHHHHCCCCCCeEeHHHHHH
Confidence            4678899999999999999999754

>d1uhka1 a.39.1.5 (A:3-189) Calcium-regulated photoprotein {Jellyfish (Aequorea aequorea), aequorin [TaxId: 168712]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium-regulated photoprotein
species: Jellyfish (Aequorea aequorea), aequorin [TaxId: 168712]

Probab=85.91  E-value=0.46  Score=37.47  Aligned_cols=52  Identities=31%  Similarity=0.495  Sum_probs=39.7

Q ss_pred             hhhcccCCCccchHHHHHHHHHHcC-CCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          290 EAADIDEDGVVSAAEFIIYKLKEMG-KISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       290 ~~~~l~~~g~v~~~e~v~~~l~~~~-~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      ...|.+++|.|+..|+... +...| ..++++++.   -|...|.|+||.|+.+|..
T Consensus       112 ~~~D~d~~G~Is~~El~~~-l~~~g~~~~~~~~~~---lf~~~D~d~dG~Is~~EF~  164 (187)
T d1uhka1         112 DIVDKDQNGAITLDEWKAY-TKAAGIIQSSEDCEE---TFRVCDIDESGQLDVDEMT  164 (187)
T ss_dssp             HHHCTTCSSEECHHHHHHH-HHHHTSCCSHHHHHH---HHHHSCCCTTSCEEHHHHH
T ss_pred             HHHccCCCcccchHHHHHH-HHHhCCCccHHHHHH---HHHHhCCCCCCCEeHHHHH
Confidence            3457789999999887644 45555 477777655   5677899999999999974

>d1qjta_ a.39.1.6 (A:) Eps15 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Eps15 homology domain (EH domain)
domain: Eps15
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.67  E-value=0.68  Score=33.19  Aligned_cols=51  Identities=22%  Similarity=0.285  Sum_probs=37.1

Q ss_pred             hhhcccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          290 EAADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       290 ~~~~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      ...|.+++|.++..| +...+.+. .+..+++..|   ++..|.|++|.|+.++..
T Consensus        18 ~~~D~d~~G~i~~~e-~~~~l~~s-~L~~~~L~~i---~~~~D~d~dG~L~~~EF~   68 (99)
T d1qjta_          18 RQVEAGNTGRVLALD-AAAFLKKS-GLPDLILGKI---WDLADTDGKGVLSKQEFF   68 (99)
T ss_dssp             HHHCCTTSSCCCSHH-HHHHHHTS-SSCHHHHHHH---HHHHCCSSSSSCCSHHHH
T ss_pred             HHHCCCCCCcccHHH-HHHHHHHc-CCcHHHHHHH---HHHHcCCCCCccCHHHHH
Confidence            455778999998766 34445544 4788877665   555699999999999964

>d2jxca1 a.39.1.6 (A:121-215) Eps15 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Eps15 homology domain (EH domain)
domain: Eps15
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.41  E-value=0.49  Score=33.72  Aligned_cols=48  Identities=17%  Similarity=0.254  Sum_probs=34.7

Q ss_pred             hcccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          292 ADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       292 ~~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      .| +++|.++..| +...|.+.| +.++++++|   +...|.|++|.|+.++..
T Consensus        19 ~D-~~~G~i~~~e-l~~~l~~~g-l~~~~L~~I---w~~~D~~~dG~l~~~EF~   66 (95)
T d2jxca1          19 LS-PVNGFLSGDK-VKPVLLNSK-LPVDILGRV---WELSDIDHDGMLDRDEFA   66 (95)
T ss_dssp             TC-CBTTEEEHHH-HHHHHTTSS-CCHHHHHHH---HHHHCTTCSSEEEHHHHH
T ss_pred             hC-CCCCceeHHH-HHHHHHHcC-CCHHHHHHH---HHHhcCCCCCeEcHHHHH
Confidence            35 6788999766 444455544 777777654   566799999999999963

>d1exra_ a.39.1.5 (A:) Calmodulin {Ciliate (Paramecium tetraurelia) [TaxId: 5888]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Ciliate (Paramecium tetraurelia) [TaxId: 5888]

Probab=85.29  E-value=0.46  Score=35.94  Aligned_cols=55  Identities=25%  Similarity=0.436  Sum_probs=40.1

Q ss_pred             hhhcccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952          290 EAADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       290 ~~~~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      ...|.+++|.++-.||+...-.....  ....+.+.+.|+..|.|++|.|+.+|+.-
T Consensus        52 ~~~d~~~~g~i~~~ef~~~~~~~~~~--~~~~~~~~~~F~~~D~d~~G~i~~~e~~~  106 (146)
T d1exra_          52 NEVDADGNGTIDFPEFLSLMARKMKE--QDSEEELIEAFKVFDRDGNGLISAAELRH  106 (146)
T ss_dssp             HHHCTTCSSSEEHHHHHHHHHHHHHH--HHHHHHHHHHHHHHSTTCSSCBCHHHHHH
T ss_pred             HhcCCCCCCcccHHHHHHHHHHHhhc--cChHHHHHHHHHHhCCCCCCcCCHHHHHH
Confidence            34567788899988887765333322  23355677889999999999999999754

>d1nyaa_ a.39.1.5 (A:) Calerythrin {Saccharopolyspora erythraea [TaxId: 1836]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calerythrin
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=85.24  E-value=0.36  Score=37.41  Aligned_cols=53  Identities=32%  Similarity=0.565  Sum_probs=39.6

Q ss_pred             hhhcccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhhhc
Q 047952          290 EAADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFLA  347 (354)
Q Consensus       290 ~~~~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~~  347 (354)
                      ...|.+++|.++..|+... +...+ +++++++.+   |+.+|.|+||.|+.+++.-+
T Consensus       109 ~~~D~d~dG~Is~~E~~~~-~~~~~-~~~~~~~~~---f~~~D~d~dG~i~~~Ef~~~  161 (176)
T d1nyaa_         109 GMCDKNADGQINADEFAAW-LTALG-MSKAEAAEA---FNQVDTNGNGELSLDELLTA  161 (176)
T ss_dssp             HHTCSSCCSEEEHHHHHHH-HHHTT-CCHHHHHHH---HHHHCTTCSSEEEHHHHHHH
T ss_pred             HHHccCCChhhhHHHHHHH-HHhcC-CcHHHHHHH---HHHHCCCCCCcEeHHHHHHH
Confidence            3457789999999988653 34443 677776654   77779999999999998754

>d5pala_ a.39.1.4 (A:) Parvalbumin {Leopard shark (Triakis semifasciata) [TaxId: 30493]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Parvalbumin
species: Leopard shark (Triakis semifasciata) [TaxId: 30493]

Probab=84.97  E-value=0.46  Score=34.80  Aligned_cols=53  Identities=17%  Similarity=0.362  Sum_probs=37.8

Q ss_pred             hhhcccCCCccchHHHH--HHHHHHcC-CCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          290 EAADIDEDGVVSAAEFI--IYKLKEMG-KISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       290 ~~~~l~~~g~v~~~e~v--~~~l~~~~-~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      ..-|.+++|.++..|..  ...+...| .++.++++++   +++.|.|+||.|+-+|..
T Consensus        48 ~~~D~d~~G~I~~~El~~~l~~l~~~g~~~~~~e~~~~---~~~~D~d~dG~I~~~EF~  103 (109)
T d5pala_          48 EILDKDQSGFIEEEELKGVLKGFSAHGRDLNDTETKAL---LAAGDSDHDGKIGADEFA  103 (109)
T ss_dssp             HHHCTTCSSEECHHHHHTHHHHHCTTCCCCCHHHHHHH---HHHHCTTCSSSEEHHHHH
T ss_pred             hhhcCCCCCeEcHHHHHHHHHHhhhccCcCCHHHHHHH---HHHhCCCCCCCEeHHHHH
Confidence            34577899999987753  23333333 5788888765   556689999999998864

>d1fi6a_ a.39.1.6 (A:) Reps1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Eps15 homology domain (EH domain)
domain: Reps1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.62  E-value=0.54  Score=33.17  Aligned_cols=51  Identities=14%  Similarity=0.261  Sum_probs=37.3

Q ss_pred             hhhcccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          290 EAADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       290 ~~~~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      ...|.+++|.++..|... .+.+.+ +..+++..|.   +..|.|++|.|+.++..
T Consensus        16 ~~~D~d~~G~i~~~e~~~-~l~~~~-l~~~~l~~i~---~~~D~d~dG~l~~~EF~   66 (92)
T d1fi6a_          16 KTIQPDLNGFIPGSAAKE-FFTKSK-LPILELSHIW---ELSDFDKDGALTLDEFC   66 (92)
T ss_dssp             TTTCCSTTCEEEHHHHHH-HHHHHS-SCHHHHHHHH---HHHCTTCSSEEEHHHHH
T ss_pred             HHhCCCcccchhHHHHHH-HHHHcc-CCHHHHHHHH---HHhCCCCCCeecHHHHH
Confidence            345678999999765444 455555 6777776654   45699999999999964

>d1rwya_ a.39.1.4 (A:) Parvalbumin {Rat (Rattus rattus) [TaxId: 10117]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Parvalbumin
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=84.16  E-value=0.58  Score=34.12  Aligned_cols=52  Identities=19%  Similarity=0.283  Sum_probs=37.5

Q ss_pred             hhhcccCCCccchHHHHHHHHHHcC----CCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          290 EAADIDEDGVVSAAEFIIYKLKEMG----KISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       290 ~~~~l~~~g~v~~~e~v~~~l~~~~----~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      ..-|.+++|.++..|+.. .+...+    .+++++++.+   |++.|.|+||.|+-+|..
T Consensus        48 ~~~D~d~~G~I~~~El~~-~l~~l~~~~~~~~~~e~~~~---~~~~D~d~dG~i~~~EF~  103 (109)
T d1rwya_          48 HILDKDKSGFIEEDELGS-ILKGFSSDARDLSAKETKTL---MAAGDKDGDGKIGVEEFS  103 (109)
T ss_dssp             HHHSTTCSSEECHHHHHT-HHHHHCTTCCCCCHHHHHHH---HHHHCTTCSSSEEHHHHH
T ss_pred             hcccCCCCCcCcHHHHHH-HHHHhccccccCCHHHHHHH---HHHhCCCCCCeEeHHHHH
Confidence            455778999999888653 334332    4678887665   555688999999999864

>d2obha1 a.39.1.5 (A:26-166) Calmodulin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.66  E-value=0.84  Score=33.99  Aligned_cols=52  Identities=25%  Similarity=0.423  Sum_probs=38.8

Q ss_pred             hhhcccCCCccchHHHHHHHHHHcC-CCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          290 EAADIDEDGVVSAAEFIIYKLKEMG-KISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       290 ~~~~l~~~g~v~~~e~v~~~l~~~~-~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      ...|.+++|.++..++.. .+.+.| .++.++++.+   |...|.|+||.|+.+|..
T Consensus        86 ~~~d~~~~G~i~~~el~~-~l~~~g~~l~~~e~~~l---~~~~D~d~dG~i~~~EF~  138 (141)
T d2obha1          86 KLFDDDETGKISFKNLKR-VAKELGENLTDEELQEM---IDEADRDGDGEVSEQEFL  138 (141)
T ss_dssp             HHHCTTCSSSBCHHHHHH-HHHHTTCCCCHHHHHHH---HHHHCTTSSSSBCHHHHH
T ss_pred             HHhcccCCCCccHHHHHH-HHHHhCCCCCHHHHHHH---HHHHCCCCCCCEeHHHHH
Confidence            456678899999877654 455565 6888877665   566788999999998853

>d1zfsa1 a.39.1.2 (A:1-93) Calcyclin (S100) {Rat (Rattus norvegicus), s100a1 [TaxId: 10116]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: S100 proteins
domain: Calcyclin (S100)
species: Rat (Rattus norvegicus), s100a1 [TaxId: 10116]

Probab=83.63  E-value=0.32  Score=34.58  Aligned_cols=50  Identities=14%  Similarity=0.150  Sum_probs=34.0

Q ss_pred             hcccCC-CccchHHHHHHHHHHcC------CCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          292 ADIDED-GVVSAAEFIIYKLKEMG------KISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       292 ~~l~~~-g~v~~~e~v~~~l~~~~------~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      ++.+|+ |.++..|+.. .|.+.+      ..+++++.+   -+.++|.|+||.|+-++..
T Consensus        19 ~d~dg~~G~is~~El~~-~L~~~~~~~~~~~~~~~~~~~---~~~~~D~d~dG~Idf~EF~   75 (93)
T d1zfsa1          19 SGKEGDKYKLSKKELKD-LLQTELSSFLDVQKDADAVDK---IMKELDENGDGEVDFQEFV   75 (93)
T ss_dssp             GGGSSCCSSEEHHHHHH-HHHHHSTTTSCCSSCHHHHHH---HHHHHTTTCCSEECSHHHH
T ss_pred             cccCCCCCEecHHHHHH-HHHHhcccccccCCCHHHHHH---HHHHHcCCCCCCCcHHHHH
Confidence            455654 7899877654 344432      345555544   5888899999999999853

>d1xo5a_ a.39.1.5 (A:) Calcium- and integrin-binding protein, CIB {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium- and integrin-binding protein, CIB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.15  E-value=0.54  Score=37.45  Aligned_cols=55  Identities=18%  Similarity=0.404  Sum_probs=39.3

Q ss_pred             hhhcccCCCccchHHHHHHHHHH------cCCCCHHHHHHHHH-HhhhcCCCCCCccChhhhh
Q 047952          290 EAADIDEDGVVSAAEFIIYKLKE------MGKISQEDIALVME-EFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       290 ~~~~l~~~g~v~~~e~v~~~l~~------~~~~~~~~l~~i~~-~f~~ld~~~~g~l~~~d~~  345 (354)
                      ..-|.+++|.++..|.... +..      ....++++++++.+ -|.+.|.|+||.|+.+|..
T Consensus       102 ~~~D~d~~G~I~~~el~~~-l~~~~~~~~~~~~~~~~~~~~v~~~~~~~D~d~dG~Is~~EF~  163 (180)
T d1xo5a_         102 RIFDFDDDGTLNREDLSRL-VNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLSEFQ  163 (180)
T ss_dssp             HHHCTTCSSSBCHHHHHHH-HHHHC------CCCCTTHHHHHHHHHHHHCTTCSSSBCHHHHH
T ss_pred             ccccCCCCCeeeHHHHHHH-HHHHHhccccccccHHHHHHHHHHHHHHhCCCCCCcCcHHHHH
Confidence            3457889999998775432 332      23466677777554 5899999999999999964

>d1pvaa_ a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [TaxId: 8010]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Parvalbumin
species: Pike (Esox lucius) [TaxId: 8010]

Probab=82.96  E-value=0.64  Score=33.98  Aligned_cols=52  Identities=21%  Similarity=0.435  Sum_probs=37.3

Q ss_pred             hhhcccCCCccchHHHHHHHHHHc---C-CCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          290 EAADIDEDGVVSAAEFIIYKLKEM---G-KISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       290 ~~~~l~~~g~v~~~e~v~~~l~~~---~-~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      ..-|.+++|.++..|.. ..+...   | .++.++++++.   .+.|.|+||.|+-+|..
T Consensus        48 ~~~D~d~~G~I~~~El~-~~l~~l~~~g~~ls~~ev~~~~---~~~D~d~dG~I~~~EF~  103 (109)
T d1pvaa_          48 KAIDADASGFIEEEELK-FVLKSFAADGRDLTDAETKAFL---KAADKDGDGKIGIDEFE  103 (109)
T ss_dssp             HHHCTTCSSSBCHHHHH-TGGGGTCTTCCCCCHHHHHHHH---HHHCTTCSSSBCHHHHH
T ss_pred             hCccCCCcCeEcHHHHH-HHHHHhhhcCCCCCHHHHHHHH---HHHCCCCcCcEeHHHHH
Confidence            45678899999987743 333332   3 47788887764   55689999999999864

>d2pvba_ a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [TaxId: 8010]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Parvalbumin
species: Pike (Esox lucius) [TaxId: 8010]

Probab=82.80  E-value=0.38  Score=35.15  Aligned_cols=47  Identities=23%  Similarity=0.251  Sum_probs=30.0

Q ss_pred             cCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952          295 DEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       295 ~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      +.+|.++-.||+...-  ....+++   .+.+.|+..|.|++|.|+.+|+.-
T Consensus        18 ~~~gsi~~~eF~~~~~--l~~~~~~---~l~~~F~~~D~d~~G~I~~~el~~   64 (107)
T d2pvba_          18 SAADSFKHKEFFAKVG--LASKSLD---DVKKAFYVIDQDKSGFIEEDELKL   64 (107)
T ss_dssp             CSTTCCCHHHHHHHHT--GGGSCHH---HHHHHHHHHCTTCSSSBCHHHHHT
T ss_pred             cCCCCcCHHHHHHHHh--cccCCHH---HHHHHHHhhccCCCCcCcHHHHHH
Confidence            3455677777765432  2222333   456678888888888888888754

>d1fw4a_ a.39.1.5 (A:) Calmodulin {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=82.70  E-value=0.31  Score=32.06  Aligned_cols=25  Identities=28%  Similarity=0.383  Sum_probs=21.4

Q ss_pred             HHHHHhhhcCCCCCCccChhhhhhc
Q 047952          323 LVMEEFQDLDFDQSGTLSPSDLFLA  347 (354)
Q Consensus       323 ~i~~~f~~ld~~~~g~l~~~d~~~~  347 (354)
                      ++.+.|...|.|++|.|+.+|+.-.
T Consensus         4 el~~aF~~fD~d~~G~I~~~el~~~   28 (65)
T d1fw4a_           4 EIREAFRVFDKDGNGYISAAELRHV   28 (65)
T ss_dssp             HHHHHHHHHCTTCSSEECHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCcCCHHHHHHH
Confidence            4577899999999999999998653

>d1c7va_ a.39.1.5 (A:) Calcium vector protein {Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium vector protein
species: Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]

Probab=82.55  E-value=0.2  Score=33.45  Aligned_cols=51  Identities=20%  Similarity=0.481  Sum_probs=37.2

Q ss_pred             hhcccCCCccchHHHHHHHHHHcCC--CCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          291 AADIDEDGVVSAAEFIIYKLKEMGK--ISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       291 ~~~l~~~g~v~~~e~v~~~l~~~~~--~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      .-|.+++|.++..|... .+...|.  +++++++.+   +...|.|+||.|+-++..
T Consensus        10 ~~D~d~~G~I~~~el~~-~l~~~g~~~~s~~e~~~~---~~~~D~d~dG~i~~~EF~   62 (68)
T d1c7va_          10 VFDANGDGVIDFDEFKF-IMQKVGEEPLTDAEVEEA---MKEADEDGNGVIDIPEFM   62 (68)
T ss_dssp             HHSCSGGGEECHHHHHH-HSSTTTTCCCCHHHHHHH---HHHHCSSGGGSEEHHHHH
T ss_pred             HHcCCCcCeEcHHHHHH-HHHHhCCCCCCHHHHHHH---HHHhCCCCCCcEeHHHHH
Confidence            44667899999877544 3455543  688888775   556799999999998864

>d1jfja_ a.39.1.5 (A:) EHCABP {Entamoeba (Entamoeba histolytica) [TaxId: 5759]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: EHCABP
species: Entamoeba (Entamoeba histolytica) [TaxId: 5759]

Probab=82.44  E-value=0.5  Score=34.92  Aligned_cols=53  Identities=21%  Similarity=0.384  Sum_probs=38.2

Q ss_pred             hhhcccCCCccchHHHHHHHHHHcCCC-CHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952          290 EAADIDEDGVVSAAEFIIYKLKEMGKI-SQEDIALVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       290 ~~~~l~~~g~v~~~e~v~~~l~~~~~~-~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      ...|.+++|.++..|+... +.+.+.. +++++   ..-|...|.|++|.++.++..-
T Consensus         7 ~~~D~d~dG~is~~E~~~~-l~~~~~~~~~~~~---~~~~~~~D~~~~g~i~~~Ef~~   60 (134)
T d1jfja_           7 KEIDVNGDGAVSYEEVKAF-VSKKRAIKNEQLL---QLIFKSIDADGNGEIDQNEFAK   60 (134)
T ss_dssp             HHHCTTCSSEEEHHHHHHH-HHTTCCSSHHHHH---HHHHHHHCSSCCSEEEHHHHHH
T ss_pred             HHHcCCCcCCCcHHHHHHH-HHHcCCCCCHHHH---HHHHHHhhhccccccccccccc
Confidence            4557789999999997654 5555544 34444   4457778999999999999643

>d2scpa_ a.39.1.5 (A:) Sarcoplasmic calcium-binding protein {Sandworm (Nereis diversicolor) [TaxId: 126592]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Sarcoplasmic calcium-binding protein
species: Sandworm (Nereis diversicolor) [TaxId: 126592]

Probab=82.33  E-value=0.7  Score=35.87  Aligned_cols=55  Identities=9%  Similarity=0.071  Sum_probs=40.3

Q ss_pred             hcccCCCccchHHHHHHHHHHcC--CCCHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952          292 ADIDEDGVVSAAEFIIYKLKEMG--KISQEDIALVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       292 ~~l~~~g~v~~~e~v~~~l~~~~--~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      .+.++++.++..+|+........  .........+...|..+|.|+||.|+.+|+.-
T Consensus        62 ~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~dG~Is~~E~~~  118 (174)
T d2scpa_          62 TAVAGGKGIDETTFINSMKEMVKNPEAKSVVEGPLPLFFRAVDTNEDNNISRDEYGI  118 (174)
T ss_dssp             GGTTTTSCEEHHHHHHHHHHHTSCGGGTHHHHTHHHHHHHHHCTTCSSSEEHHHHHH
T ss_pred             cccCCCCcCcHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHCCCccccCCHHHHHH
Confidence            35677888998888776544333  23344455677889999999999999999753

>d1w7jb1 a.39.1.5 (B:11-149) Myosin Essential Chain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Myosin Essential Chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.09  E-value=0.31  Score=36.71  Aligned_cols=21  Identities=24%  Similarity=0.468  Sum_probs=9.4

Q ss_pred             HHHHhhhcCCCCCCccChhhh
Q 047952          324 VMEEFQDLDFDQSGTLSPSDL  344 (354)
Q Consensus       324 i~~~f~~ld~~~~g~l~~~d~  344 (354)
                      +.+.|..+|.|++|.|+.+++
T Consensus        79 l~~aF~~~D~d~~G~I~~~el   99 (139)
T d1w7jb1          79 YLEGFRVFDKEGNGKVMGAEL   99 (139)
T ss_dssp             CHHHHHTTCTTSSSEEEHHHH
T ss_pred             HHHhhhhccCCCCCeEeHHHH
Confidence            334444444444444444443

>d2pvba_ a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [TaxId: 8010]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Parvalbumin
domain: Parvalbumin
species: Pike (Esox lucius) [TaxId: 8010]

Probab=81.82  E-value=0.5  Score=34.47  Aligned_cols=52  Identities=17%  Similarity=0.324  Sum_probs=38.3

Q ss_pred             hhhcccCCCccchHHHHHHHHHHcC----CCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          290 EAADIDEDGVVSAAEFIIYKLKEMG----KISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       290 ~~~~l~~~g~v~~~e~v~~~l~~~~----~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      ...|.+++|.++..|+.. .+.+.+    ++++++++.+   |++.|.|+||.|+-+|..
T Consensus        47 ~~~D~d~~G~I~~~el~~-~l~~l~~~~~~~~~~~~~~l---~~~~D~d~dG~I~~~EF~  102 (107)
T d2pvba_          47 YVIDQDKSGFIEEDELKL-FLQNFSPSARALTDAETKAF---LADGDKDGDGMIGVDEFA  102 (107)
T ss_dssp             HHHCTTCSSSBCHHHHHT-GGGGTCTTSCCCCHHHHHHH---HHHHCTTCSSSBCHHHHH
T ss_pred             HhhccCCCCcCcHHHHHH-HHHHhhcccccCCHHHHHHH---HHHhCCCCCCcEeHHHHH
Confidence            455788999999877544 344432    5678877765   567799999999999864

>d2jxca1 a.39.1.6 (A:121-215) Eps15 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Eps15 homology domain (EH domain)
domain: Eps15
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.21  E-value=0.39  Score=34.27  Aligned_cols=30  Identities=27%  Similarity=0.230  Sum_probs=26.9

Q ss_pred             CCHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952          316 ISQEDIALVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       316 ~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      +++++..++.+-|+.+| |++|.|+.+++.-
T Consensus         4 ls~ee~~~y~~~F~~~D-~~~G~i~~~el~~   33 (95)
T d2jxca1           4 VKPEDKAKYDAIFDSLS-PVNGFLSGDKVKP   33 (95)
T ss_dssp             SCHHHHHHHHHHHHHTC-CBTTEEEHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhC-CCCCceeHHHHHH
Confidence            68899999999999999 8999999998753

>d1xo5a_ a.39.1.5 (A:) Calcium- and integrin-binding protein, CIB {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calcium- and integrin-binding protein, CIB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.20  E-value=1.1  Score=35.48  Aligned_cols=53  Identities=21%  Similarity=0.196  Sum_probs=38.3

Q ss_pred             hccc-CCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952          292 ADID-EDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       292 ~~l~-~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      -|.+ ++|.++-.||+...-.-...-+.++  .+...|...|.|++|.|+.+|+.-
T Consensus        66 fd~~~~~g~I~f~EFv~~l~~~~~~~~~~~--kl~~~F~~~D~d~~G~I~~~el~~  119 (180)
T d1xo5a_          66 FSTSPAKDSLSFEDFLDLLSVFSDTATPDI--KSHYAFRIFDFDDDGTLNREDLSR  119 (180)
T ss_dssp             HCCSTTCCEECHHHHHHHHHHHSTTSCHHH--HHHHHHHHHCTTCSSSBCHHHHHH
T ss_pred             ccCCCCCCcCcHHHHHHHHHHHhhcCCHHH--HHHHhhccccCCCCCeeeHHHHHH
Confidence            3445 6889999999887544444444432  445569999999999999999753

>d2p7tc1 f.14.1.1 (C:86-119) Potassium channel protein {Streptomyces lividans [TaxId: 1916]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel protein
species: Streptomyces lividans [TaxId: 1916]

Probab=80.88  E-value=2  Score=23.38  Aligned_cols=31  Identities=13%  Similarity=0.354  Sum_probs=27.6

Q ss_pred             cchhHHHHHHHHhHHHHHHhHHHHHHHHHHH
Q 047952          126 VSKLLSCAFVFTGMGLVGMFLSKAADYLVDK  156 (354)
Q Consensus       126 ~~r~~~~~~~l~Gi~~~~~~~~~~~~~~~~~  156 (354)
                      +||.+++..|+.|+.-+++.++.++.+++.+
T Consensus         2 wgrcvavvvmvagits~glv~aa~atwfvgr   32 (34)
T d2p7tc1           2 WGRCVAVVVMVAGITSFGLVTAALATWFVGR   32 (34)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cceEEEEEEEEeccchhhhHHHHHHHHhhcc
Confidence            5899999999999999999999999888754

>d1jbaa_ a.39.1.5 (A:) Guanylate cyclase activating protein 2, GCAP-2 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Guanylate cyclase activating protein 2, GCAP-2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=80.82  E-value=0.93  Score=35.96  Aligned_cols=53  Identities=17%  Similarity=0.248  Sum_probs=38.7

Q ss_pred             hhhcccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          290 EAADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       290 ~~~~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      ...|.+++|.++-.||+...-........+.+   ...|...|.|++|.++.+++.
T Consensus        65 ~~~D~d~dG~I~f~Ef~~~l~~~~~~~~~~~~---~~~F~~~D~d~~g~i~~~E~~  117 (189)
T d1jbaa_          65 RAFDTNGDNTIDFLEYVAALNLVLRGTLEHKL---KWTFKIYDKDRNGCIDRQELL  117 (189)
T ss_dssp             HHHCCSSSSEECHHHHHHHHHHHSSCCCTHHH---HHHHHHHCSSCSSCBCHHHHH
T ss_pred             HHhccCCCCeEeehhHHHHHHhhcccchHHHH---HHHHhhhccCCCCcccHhHHH
Confidence            34567889999999998876655544444444   345888899999999998864

>d1fi5a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus), cardiac isoform [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Troponin C
species: Chicken (Gallus gallus), cardiac isoform [TaxId: 9031]

Probab=80.76  E-value=0.37  Score=33.19  Aligned_cols=24  Identities=17%  Similarity=0.293  Sum_probs=20.8

Q ss_pred             HHHHHhhhcCCCCCCccChhhhhh
Q 047952          323 LVMEEFQDLDFDQSGTLSPSDLFL  346 (354)
Q Consensus       323 ~i~~~f~~ld~~~~g~l~~~d~~~  346 (354)
                      ++.+.|...|.|++|.|+.+|+.-
T Consensus        16 ~l~~~F~~~D~d~~G~I~~~el~~   39 (81)
T d1fi5a_          16 ELSDLFRMFDKNADGYIDLEELKI   39 (81)
T ss_dssp             HHHHHHHHHCSSCSSEECHHHHHH
T ss_pred             HHHHHHHHHcCCCCCcccHHHHHH
Confidence            456789999999999999999854

>d1fpwa_ a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Frequenin (neuronal calcium sensor 1)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.75  E-value=0.66  Score=37.04  Aligned_cols=53  Identities=19%  Similarity=0.312  Sum_probs=39.1

Q ss_pred             hhhcccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          290 EAADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       290 ~~~~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      ..-|.+++|.++..||+...-.-......+.+   ...|+..|.|++|.|+.+|+.
T Consensus        70 ~~~D~~~~G~I~~~Ef~~~~~~~~~~~~~e~~---~~~F~~~D~d~dG~is~~E~~  122 (190)
T d1fpwa_          70 TVFDKDNNGFIHFEEFITVLSTTSRGTLEEKL---SWAFELYDLNHDGYITFDEML  122 (190)
T ss_dssp             HTCCSSCSSEECHHHHHHHHHHHSCCCSTHHH---HHHHHHHCSSCSSEEEHHHHH
T ss_pred             HHhCcCCCCcccHHHHHHHHHHHccCchHHHH---HHHHHHhccCCCCcCcHHHHH
Confidence            34567789999999998775444333444444   557888899999999999964

>d1wdcc_ a.39.1.5 (C:) Myosin Regulatory Chain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Myosin Regulatory Chain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=80.75  E-value=0.6  Score=35.78  Aligned_cols=48  Identities=21%  Similarity=0.182  Sum_probs=27.9

Q ss_pred             cCCCccchHHHHHHHHHHcC--CCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          295 DEDGVVSAAEFIIYKLKEMG--KISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       295 ~~~g~v~~~e~v~~~l~~~~--~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      +++|.++-.||+...-....  ....+   ++.+.|..+|.|++|.|+.+|+.
T Consensus        56 ~~~~~i~~~eFl~~~~~~~~~~~~~~~---~l~~aF~~~D~~~~G~I~~~el~  105 (152)
T d1wdcc_          56 MGEKSLPFEEFLPAYEGLMDCEQGTFA---DYMEAFKTFDREGQGFISGAELR  105 (152)
T ss_dssp             TTSCEECHHHHHHHHHHHTTSCCCCHH---HHHHHHHTTCSSSSSEEEHHHHH
T ss_pred             cccccccccccccccccccccchhHHH---hhhhhhhccccccCccchHHHHH
Confidence            45566776666654332222  22333   34556777777777777777764

>d2p7tc1 f.14.1.1 (C:86-119) Potassium channel protein {Streptomyces lividans [TaxId: 1916]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel protein
species: Streptomyces lividans [TaxId: 1916]

Probab=80.65  E-value=2.4  Score=23.03  Aligned_cols=30  Identities=17%  Similarity=0.244  Sum_probs=26.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047952          241 GRAFGVVWISSSTMTLAQFFLYVAEFNTEK  270 (354)
Q Consensus       241 gr~~~~~~i~~g~~~~~~~~~~i~~~~~~~  270 (354)
                      ||..++..++.|+.-+++.++.++.++..+
T Consensus         3 grcvavvvmvagits~glv~aa~atwfvgr   32 (34)
T d2p7tc1           3 GRCVAVVVMVAGITSFGLVTAALATWFVGR   32 (34)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEEEEEeccchhhhHHHHHHHHhhcc
Confidence            788999999999999999999999888754

>d1m45a_ a.39.1.5 (A:) Myosin Light Chain Mlc1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Myosin Light Chain Mlc1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.58  E-value=0.93  Score=34.26  Aligned_cols=52  Identities=17%  Similarity=0.433  Sum_probs=39.6

Q ss_pred             hhhcccCCCccchHHHHHHHHHHcC-CCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          290 EAADIDEDGVVSAAEFIIYKLKEMG-KISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       290 ~~~~l~~~g~v~~~e~v~~~l~~~~-~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      ...|.++.|.++..|+... |...| .+++++++.+   +...|.|+||.++-+|+.
T Consensus        88 ~~~D~~~~G~I~~~el~~~-l~~~g~~l~~~ei~~l---~~~~D~d~dG~I~y~eF~  140 (146)
T d1m45a_          88 QVFDKESTGKVSVGDLRYM-LTGLGEKLTDAEVDEL---LKGVEVDSNGEIDYKKFI  140 (146)
T ss_dssp             HTTCSSSSSEEEHHHHHHH-HHHSTTCCCHHHHHHH---HTTCCCCTTSEEEHHHHH
T ss_pred             Hhhccccccccchhhhhhh-hcccCCcchHHHHHHH---HHHhCCCCCCcEEHHHHH
Confidence            4556778999998775555 55666 5778887665   667899999999998864

>d1omra_ a.39.1.5 (A:) Recoverin {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Recoverin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=80.30  E-value=1.3  Score=35.39  Aligned_cols=56  Identities=18%  Similarity=0.204  Sum_probs=36.2

Q ss_pred             hhhcccCCCccchHHHHHHHHHHcCCCCHHH----------HH-HHHHHhhhcCCCCCCccChhhhh
Q 047952          290 EAADIDEDGVVSAAEFIIYKLKEMGKISQED----------IA-LVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       290 ~~~~l~~~g~v~~~e~v~~~l~~~~~~~~~~----------l~-~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      ..-|.+++|.++..|+....-.-.......+          .+ ...+-|...|.|+||.|+.+|..
T Consensus       106 ~~~D~d~~G~is~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~D~d~dG~Is~~EF~  172 (201)
T d1omra_         106 SLYDVDGNGTISKNEVLEIVTAIFKMISPEDTKHLPEDENTPEKRAEKIWGFFGKKDDDKLTEKEFI  172 (201)
T ss_dssp             HHHCTTCSSSBCHHHHHHHHHHHHTTSCHHHHTTSCGGGSSHHHHHHHHHHHTTCCTTCCBCHHHHH
T ss_pred             HHHccCCCCccCHHHHHHHHHHHHhhcChhhhhhhhhhhccHHHHHHHHHHHhCCCCCCCCcHHHHH
Confidence            4557889999999886644322222222221          11 12345899999999999999964

>d1lkja_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.25  E-value=1.2  Score=33.59  Aligned_cols=51  Identities=27%  Similarity=0.478  Sum_probs=37.8

Q ss_pred             hhhcccCCCccchHHHHHHHHHHcC-CCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952          290 EAADIDEDGVVSAAEFIIYKLKEMG-KISQEDIALVMEEFQDLDFDQSGTLSPSDLF  345 (354)
Q Consensus       290 ~~~~l~~~g~v~~~e~v~~~l~~~~-~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~  345 (354)
                      ...|.+++|.++..|+... +...| .++.++++++.+.+   | |+||+|+-++..
T Consensus        90 ~~~D~d~~G~I~~~el~~~-l~~~g~~~~~~~~~~~~~~~---d-d~dG~I~~~eF~  141 (146)
T d1lkja_          90 KVFDKNGDGLISAAELKHV-LTSIGEKLTDAEVDDMLREV---S-DGSGEINIQQFA  141 (146)
T ss_dssp             HHHCSSSSCEEEHHHHHHH-HHHHTCSCCHHHHHHHHHHH---C-CSSSEEEHHHHH
T ss_pred             HHhCCCCCCcCcHHHHHHH-HHHcCCcccHHHHHHHHHhc---c-CCCCeEeHHHHH
Confidence            4567789999999887554 44444 67888887776654   6 899999988853