Citrus Sinensis ID: 047958

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100---
Protein Sequence
TELINSGTVTEINAQQESVKLRQQIQMLQNSNKHLMRDSLSSLTVKELKQLENRHEFQQANMATGQELNAIHALASQNFFGPAIIEGGGSAYSHPDKKILHLG
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHcccccHHHHHHcHHHHccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccHHcccHcHccHccccHHHccccccccccccccEEccc
Coil and Loop (DISEMBL)
telinsgtvTEINAQQESVKLRQQIQMLQNSNKHLMRDSLSSLTVKELKQLENRHEFQQANMATGQELNAIHALAsqnffgpaiiegggsayshpdkkilhlg
Flexible Loop (DISEMBL)
telinsgtvteinaqqesVKLRQQIQMLQNSNKHLMRDSLSSLTVKELKQLENRHEFQQANMATGQELNAIHALASQNFFGPAIIEGggsayshpdkkilhlg
Low Complexity Region (SEG)
TELINSGTVTEINAQQESVKLRQQIQMLQNSNKHLMRDSLSSLTVKELKQLENRHEFQQANMATGQELNAIHALASQNFFGPAIIEGGGSAYSHPDKKILHLG
Disordered region (IsUnstruct)
******************************************************************ELNAIHALASQNFFGPAIIEG****************
Disordered Region (DISOPRED)
******G*****N***ESVKLRQQIQMLQNSNKH*MRDSLSSLTVKELKQLE********************ALASQNFFGP*********************
Disordered Region (DISEMBL)
TELINSGTVTEINAQQESVKLRQQIQMLQNSNKHLMRDSLSSLTVKELKQLENRHEFQQANMATGQELNAIHALASQNFFGPAIIEGGGSAYSHPDKKILHLG
Disordered Region (DISPRO)
*****************SVKLRQQIQMLQNSNKHLMRDSLSSLTVKELKQLENRHEFQQANMATGQELNAIHALASQNFFGPAIIEGGGSA************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
TELINSGTVTEINAQQExxxxxxxxxxxxxxxxxxxxxSLSSLTVKExxxxxxxxxxxxxxxxxxxxxNAIHALASQNFFGPAIIEGGGSAYSHPDKKILHLG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	103	2.2.26 [Sep-21-2011]
Q38836	230	Agamous-like MADS-box pro	no	no	0.961	0.430	0.444	5e-19
Q2QW53	270	MADS-box transcription fa	yes	no	0.485	0.185	0.611	9e-10
P17839	252	Floral homeotic protein A	no	no	0.504	0.206	0.563	2e-08
Q40704	236	MADS-box transcription fa	no	no	0.504	0.220	0.553	3e-08
Q01540	252	Floral homeotic protein A	N/A	no	0.485	0.198	0.566	4e-08
Q8RU31	265	MADS-box transcription fa	no	no	0.495	0.192	0.509	7e-08
P29381	248	Agamous-like MADS-box pro	no	no	0.543	0.225	0.508	1e-07
Q2V0P1	272	MADS-box transcription fa	no	no	0.485	0.183	0.547	3e-07
P29385	246	Agamous-like MADS-box pro	no	no	0.543	0.227	0.491	4e-07
Q40872	242	Floral homeotic protein A	N/A	no	0.543	0.231	0.474	3e-06

>sp|Q38836|AGL11_ARATH Agamous-like MADS-box protein AGL11 OS=Arabidopsis thaliana GN=AGL11 PE=1 SV=1

 Score = 93.2 bits (230), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 68/153 (44%), Positives = 83/153 (54%), Gaps = 54/153 (35%)

Query: 5   NSGTVTEINA---QQESVKLRQQIQMLQNSNKHLMRDSLSSLTVKELKQLENR------- 54
           N+ TV EINA   QQES KLRQQIQ +QNSN++LM DSLSSL+VKELKQ+ENR       
Sbjct: 78  NTSTVQEINAAYYQQESAKLRQQIQTIQNSNRNLMGDSLSSLSVKELKQVENRLEKAISR 137

Query: 55  -----HE--------------------------------FQQAN--MATGQELNAIHALA 75
                HE                                +QQ +  M +G E+NAI ALA
Sbjct: 138 IRSKKHELLLVEIENAQKREIELDNENIYLRTKVAEVERYQQHHHQMVSGSEINAIEALA 197

Query: 76  SQNFFGPAIIEG-----GGSAYSHPDKKILHLG 103
           S+N+F  +I+        G +YS PDKKILHLG
Sbjct: 198 SRNYFAHSIMTAGSGSGNGGSYSDPDKKILHLG 230

Probable transcription factor.
Arabidopsis thaliana (taxid: 3702)

>sp|Q2QW53|MAD13_ORYSJ MADS-box transcription factor 13 OS=Oryza sativa subsp. japonica GN=MADS13 PE=1 SV=2

 Score = 62.4 bits (150), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 33/54 (61%), Positives = 43/54 (79%), Gaps = 4/54 (7%)

Query: 7   GTVTEINAQQ----ESVKLRQQIQMLQNSNKHLMRDSLSSLTVKELKQLENRHE 56
             + E+NAQQ    ES KLR QIQMLQN+NKHL+ D++S+L++KELKQLE+R E
Sbjct: 82  APLIEVNAQQYYQQESAKLRHQIQMLQNTNKHLVGDNVSNLSLKELKQLESRLE 135

Probable transcription factor.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P17839|AG_ARATH Floral homeotic protein AGAMOUS OS=Arabidopsis thaliana GN=AG PE=1 SV=2

 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/55 (56%), Positives = 41/55 (74%), Gaps = 3/55 (5%)

Query: 5   NSGTVTEINAQ---QESVKLRQQIQMLQNSNKHLMRDSLSSLTVKELKQLENRHE 56
           N+G+V EINAQ   QES KLRQQI  +QNSN+ LM +++ S++ KEL+ LE R E
Sbjct: 94  NTGSVAEINAQYYQQESAKLRQQIISIQNSNRQLMGETIGSMSPKELRNLEGRLE 148

Probable transcription factor involved in the control of organ identity during the early development of flowers. Is required for normal development of stamens and carpels in the wild-type flower. Plays a role in maintaining the determinacy of the floral meristem. Acts as C class cadastral protein by repressing the A class floral homeotic genes like APETALA1. Forms an heterodimer via the K-box domain with either SEPALATTA1/AGL2, SEPALATTA2/AGL4, SEPALLATA3/AGL9 or AGL6 that could be involved in genes regulation during floral meristem development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q40704|MADS3_ORYSJ MADS-box transcription factor 3 OS=Oryza sativa subsp. japonica GN=MADS3 PE=2 SV=1

 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/56 (55%), Positives = 45/56 (80%), Gaps = 4/56 (7%)

Query: 5   NSGTVTEINAQ---QESVKLRQQIQMLQNSN-KHLMRDSLSSLTVKELKQLENRHE 56
           NSGTV E+NAQ   QES KLRQQI  LQN+N + ++ DS++++++++LKQ+ENR E
Sbjct: 78  NSGTVAEVNAQHYQQESSKLRQQISSLQNANSRTIVGDSINTMSLRDLKQVENRLE 133

Probable transcription factor involved in the development of floral organs. Acts as C-class protein in association with MADS58. Involved in the control of lodicule number (whorl 2), stamen specification (whorl 3) and floral meristem determinacy (whorl 4), but not in the regulation of carpel morphogenesis. Plays a more predominant role in controlling lodicule development and in specifying stamen identity than MADS58.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q01540|AG_BRANA Floral homeotic protein AGAMOUS OS=Brassica napus GN=AG1 PE=2 SV=1

 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/53 (56%), Positives = 40/53 (75%), Gaps = 3/53 (5%)

Query: 5   NSGTVTEINAQ---QESVKLRQQIQMLQNSNKHLMRDSLSSLTVKELKQLENR 54
           N+G+V EINAQ   QES KLRQQI  +QNSN+ LM +++ S++ KEL+ LE R
Sbjct: 94  NTGSVAEINAQYYQQESAKLRQQIISIQNSNRQLMGETIGSMSPKELRNLEGR 146

Probable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers.

Brassica napus (taxid: 3708)

>sp|Q8RU31|MAD21_ORYSJ MADS-box transcription factor 21 OS=Oryza sativa subsp. japonica GN=MADS21 PE=2 SV=1

 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 28/55 (50%), Positives = 40/55 (72%), Gaps = 4/55 (7%)

Query: 6   SGTVTEINA----QQESVKLRQQIQMLQNSNKHLMRDSLSSLTVKELKQLENRHE 56
           S  V ++N+    QQE+ K+R QIQ LQN+N+HL+ +S+ ++T KELK LENR E
Sbjct: 80  SAPVIDVNSHQYFQQEAAKMRHQIQTLQNANRHLIGESIGNMTAKELKSLENRLE 134

Probable transcription factor.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P29381|AGL1_ARATH Agamous-like MADS-box protein AGL1 OS=Arabidopsis thaliana GN=AGL1 PE=1 SV=1

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/59 (50%), Positives = 42/59 (71%), Gaps = 3/59 (5%)

Query: 1   TELINSGTVTEINAQ---QESVKLRQQIQMLQNSNKHLMRDSLSSLTVKELKQLENRHE 56
           ++ +N  +VTE N Q   QE+ KLR+QI+ +QNSN+H++ +SL SL  KELK LE R E
Sbjct: 89  SDAVNPPSVTEANTQYYQQEASKLRRQIRDIQNSNRHIVGESLGSLNFKELKNLEGRLE 147

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q2V0P1|MAD58_ORYSJ MADS-box transcription factor 58 OS=Oryza sativa subsp. japonica GN=MADS58 PE=2 SV=1

 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/53 (54%), Positives = 40/53 (75%), Gaps = 3/53 (5%)

Query: 5   NSGTVTEINAQ---QESVKLRQQIQMLQNSNKHLMRDSLSSLTVKELKQLENR 54
           N+ TV EINAQ   QE+ KL+QQI  LQNSN+ L+ D+++++  +ELKQLE R
Sbjct: 120 NASTVAEINAQHYQQEAAKLKQQITNLQNSNRTLVGDNITTMNHRELKQLEGR 172

Probable transcription factor involved in the development of floral organs. Acts as a C-class protein in association with MADS3. Involved in the control of lodicule number (whorl 2), stamen specification (whorl 3), floral meristem determinacy and regulation of the carpel morphogenesis (whorl 4). Plays a more predominant role in floral meristem determinacy than MADS3.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P29385|AGL5_ARATH Agamous-like MADS-box protein AGL5 OS=Arabidopsis thaliana GN=AGL5 PE=1 SV=1

 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/59 (49%), Positives = 42/59 (71%), Gaps = 3/59 (5%)

Query: 1   TELINSGTVTEINAQ---QESVKLRQQIQMLQNSNKHLMRDSLSSLTVKELKQLENRHE 56
           ++ +N  T+TE N Q   QE+ KLR+QI+ +QN N+H++ +SL SL  KELK LE+R E
Sbjct: 89  SDAVNPPTITEANTQYYQQEASKLRRQIRDIQNLNRHILGESLGSLNFKELKNLESRLE 147

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q40872|AG_PANGI Floral homeotic protein AGAMOUS OS=Panax ginseng GN=AG2 PE=2 SV=1

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 43/59 (72%), Gaps = 3/59 (5%)

Query: 1   TELINSGTVTEINAQ---QESVKLRQQIQMLQNSNKHLMRDSLSSLTVKELKQLENRHE 56
           T+  N+ +V+E NAQ   QE+ KLRQ+I  +Q +N+++M +SL SLTV++LK LE + E
Sbjct: 90  TDSPNTSSVSEANAQFYQQEASKLRQEISSIQKNNRNMMGESLGSLTVRDLKGLETKLE 148

Probable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers.

Panax ginseng (taxid: 4054)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	103
23194453	223	MADS box protein GHMADS-2 [Gossypium hir	0.951	0.439	0.551	2e-28
255539414	287	mads box protein, putative [Ricinus comm	0.951	0.341	0.544	3e-28
122938395	224	MADS-box protein MADS5 [Gossypium hirsut	0.961	0.441	0.530	3e-27
225460269	223	PREDICTED: MADS-box protein 5 [Vitis vin	0.961	0.443	0.493	2e-26
296089427	233	unnamed protein product [Vitis vinifera]	0.961	0.424	0.493	2e-26
307000606	227	mads-box transcription factor [Siraitia	0.951	0.431	0.489	4e-26
351727234	222	MADS domain transporter AGL11 [Glycine m	0.941	0.436	0.503	4e-26
27763670	227	mads-box transcription factor [Momordica	0.951	0.431	0.489	5e-26
226897255	222	agamous-like protein [Eucalyptus grandis	0.951	0.441	0.493	2e-25
60100358	223	MADS box protein AGL11 [Lotus japonicus]	0.902	0.417	0.514	2e-25

>gi|23194453|gb|AAN15183.1| MADS box protein GHMADS-2 [Gossypium hirsutum] gi|122938397|gb|ABM69044.1| MADS-box protein MADS6 [Gossypium hirsutum] gi|207298817|gb|ACI23560.1| agamous-like protein 1 [Gossypium barbadense]

 Score =  129 bits (324), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 81/147 (55%), Positives = 86/147 (58%), Gaps = 49/147 (33%)

Query: 5   NSGTVTEINAQ---QESVKLRQQIQMLQNSNKHLMRDSLSSLTVKELKQLENRHE----- 56
           N+ TVTEINAQ   QES KLRQQIQMLQNSN+HLM DSLSSLTVKELKQ+ENR E     
Sbjct: 78  NTNTVTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQVENRLERGITR 137

Query: 57  ---------------------------------------FQQANMATGQELNAIHALASQ 77
                                                   QQANM TG ELNAI ALAS+
Sbjct: 138 IRSKKHEMLLAEIEFLQKREIELENESVCLRTKIAEIERLQQANMVTGPELNAIQALASR 197

Query: 78  NFFGPAIIEGGGSAYSHP-DKKILHLG 103
           NFF P +IE   SAYSHP DKKILHLG
Sbjct: 198 NFFSPNVIE-HPSAYSHPSDKKILHLG 223

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539414|ref|XP_002510772.1| mads box protein, putative [Ricinus communis] gi|223551473|gb|EEF52959.1| mads box protein, putative [Ricinus communis]

 Score =  129 bits (323), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 80/147 (54%), Positives = 87/147 (59%), Gaps = 49/147 (33%)

Query: 5   NSGTVTEINAQ---QESVKLRQQIQMLQNSNKHLMRDSLSSLTVKELKQLENRHE----- 56
           N+ ++TEINAQ   QES KLRQQIQMLQNSN+HLM DSLSSLTVKELKQLENR E     
Sbjct: 123 NTSSITEINAQYYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITR 182

Query: 57  ---------------------------------------FQQANMATGQELNAIHALASQ 77
                                                   QQANM TG ELNAI AL S+
Sbjct: 183 IRSKKHELLLAEIEYLQKREIELENESVCLRTKIAEIERLQQANMVTGAELNAIQALTSR 242

Query: 78  NFFGPAIIEGGGSAYSHP-DKKILHLG 103
           NFFG  +IE GG+AYSHP DKKILHLG
Sbjct: 243 NFFGSHMIE-GGAAYSHPSDKKILHLG 268

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|122938395|gb|ABM69043.1| MADS-box protein MADS5 [Gossypium hirsutum]

 Score =  125 bits (314), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 78/147 (53%), Positives = 86/147 (58%), Gaps = 48/147 (32%)

Query: 5   NSGTVTEINAQ---QESVKLRQQIQMLQNSNKHLMRDSLSSLTVKELKQLENR------- 54
           N+ TVTEINAQ   QES KLRQQIQMLQNS++HLM DSLSSLTVKELKQLENR       
Sbjct: 78  NTNTVTEINAQYYQQESAKLRQQIQMLQNSSRHLMGDSLSSLTVKELKQLENRLERGITR 137

Query: 55  -----HEF--------------------------------QQANMATGQELNAIHALASQ 77
                HE                                 ++ANM TG ELNAI ALAS+
Sbjct: 138 IRSKKHEMLLAEIEYFQKREVELENESVCLRAKIAEIERVEEANMVTGAELNAIQALASR 197

Query: 78  NFFGPAIIE-GGGSAYSHPDKKILHLG 103
           NFF P +IE G  + YSH DKKILHLG
Sbjct: 198 NFFTPNVIERGTPTPYSHHDKKILHLG 224

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460269|ref|XP_002281890.1| PREDICTED: MADS-box protein 5 [Vitis vinifera]

 Score =  122 bits (307), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 72/146 (49%), Positives = 80/146 (54%), Gaps = 47/146 (32%)

Query: 5   NSGTVTEINAQ---QESVKLRQQIQMLQNSNKHLMRDSLSSLTVKELKQLENRHE----- 56
           N G+  EINAQ   QES KLRQQIQMLQNSN+HLM DSL+SLTVKELKQLENR E     
Sbjct: 78  NGGSTMEINAQYYQQESAKLRQQIQMLQNSNRHLMGDSLASLTVKELKQLENRLERGITR 137

Query: 57  ---------------------------------------FQQANMATGQELNAIHALASQ 77
                                                   QQANM +  E NAI AL S+
Sbjct: 138 IRSKKHELLLAEIEYLQKREIELENESVYLRTKIAEVERLQQANMVSTHEFNAIQALVSR 197

Query: 78  NFFGPAIIEGGGSAYSHPDKKILHLG 103
           NFF P +IEGG + Y  PDKK+LHLG
Sbjct: 198 NFFQPNMIEGGSTGYPLPDKKVLHLG 223

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089427|emb|CBI39246.3| unnamed protein product [Vitis vinifera]

 Score =  122 bits (307), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 72/146 (49%), Positives = 80/146 (54%), Gaps = 47/146 (32%)

Query: 5   NSGTVTEINAQ---QESVKLRQQIQMLQNSNKHLMRDSLSSLTVKELKQLENRHE----- 56
           N G+  EINAQ   QES KLRQQIQMLQNSN+HLM DSL+SLTVKELKQLENR E     
Sbjct: 78  NGGSTMEINAQYYQQESAKLRQQIQMLQNSNRHLMGDSLASLTVKELKQLENRLERGITR 137

Query: 57  ---------------------------------------FQQANMATGQELNAIHALASQ 77
                                                   QQANM +  E NAI AL S+
Sbjct: 138 IRSKKHELLLAEIEYLQKREIELENESVYLRTKIAEVERLQQANMVSTHEFNAIQALVSR 197

Query: 78  NFFGPAIIEGGGSAYSHPDKKILHLG 103
           NFF P +IEGG + Y  PDKK+LHLG
Sbjct: 198 NFFQPNMIEGGSTGYPLPDKKVLHLG 223

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307000606|gb|ADN22973.1| mads-box transcription factor [Siraitia grosvenorii]

 Score =  122 bits (305), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 73/149 (48%), Positives = 84/149 (56%), Gaps = 51/149 (34%)

Query: 6   SGTVTEINAQ---QESVKLRQQIQMLQNSN----KHLMRDSLSSLTVKELKQLENRHE-- 56
           + +VTE+N Q   QES KLRQQIQMLQNSN    +HLM DSLS+LTVKELKQLENR E  
Sbjct: 79  TSSVTELNTQYYQQESAKLRQQIQMLQNSNSNLVRHLMGDSLSALTVKELKQLENRLERG 138

Query: 57  ------------------------------------------FQQANMATGQELNAIHAL 74
                                                      QQANM +GQELNAI AL
Sbjct: 139 ITRIRSKKHEMLLAEIEYLQKREIELENENVCIRTKIAEVERLQQANMVSGQELNAIQAL 198

Query: 75  ASQNFFGPAIIEGGGSAYSHPDKKILHLG 103
           AS+NFF P ++EGG   +SH DKK+LHLG
Sbjct: 199 ASRNFFNPNMMEGGAVTFSHQDKKMLHLG 227

Source: Siraitia grosvenorii

Species: Siraitia grosvenorii

Genus: Siraitia

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727234|ref|NP_001236130.1| MADS domain transporter AGL11 [Glycine max] gi|87138095|gb|ABD28284.1| MADS domain transporter AGL11 [Glycine max]

 Score =  121 bits (304), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 73/145 (50%), Positives = 82/145 (56%), Gaps = 48/145 (33%)

Query: 6   SGTVTEINAQ---QESVKLRQQIQMLQNSNKHLMRDSLSSLTVKELKQLENRHE------ 56
           + T TEINAQ   QES KLRQQIQMLQNSN+HLM D+LS+LTVKELKQLENR E      
Sbjct: 79  ASTTTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDALSTLTVKELKQLENRLERGITRI 138

Query: 57  --------------------------------------FQQANMATGQELNAIHALASQN 78
                                                  QQ NM +G ELNAI ALAS+N
Sbjct: 139 RSKKHEMLLAEIEYFQKREIELENENLCLRTKITDVERIQQVNMVSGPELNAIQALASRN 198

Query: 79  FFGPAIIEGGGSAYSHPDKKILHLG 103
           FF P ++E GG+ Y H DKKILHLG
Sbjct: 199 FFNPNMLE-GGTVYPHSDKKILHLG 222

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|27763670|gb|AAO20104.1| mads-box transcription factor [Momordica charantia]

 Score =  121 bits (304), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 73/149 (48%), Positives = 84/149 (56%), Gaps = 51/149 (34%)

Query: 6   SGTVTEINAQ---QESVKLRQQIQMLQNSN----KHLMRDSLSSLTVKELKQLENRHE-- 56
           + +VTE+N Q   QES KLRQQIQMLQNSN    +HLM DSLS+LTVKELKQLENR E  
Sbjct: 79  TSSVTELNTQYYQQESAKLRQQIQMLQNSNSNLVRHLMGDSLSALTVKELKQLENRLERG 138

Query: 57  ------------------------------------------FQQANMATGQELNAIHAL 74
                                                      QQANM +GQELNAI AL
Sbjct: 139 ITRIRSKKHEMLLAEIEYLQKREIELENENVCIRTKIAEVERLQQANMVSGQELNAIQAL 198

Query: 75  ASQNFFGPAIIEGGGSAYSHPDKKILHLG 103
           AS+NFF P ++EGG   +SH DKK+LHLG
Sbjct: 199 ASRNFFTPNMMEGGAVTFSHQDKKMLHLG 227

Source: Momordica charantia

Species: Momordica charantia

Genus: Momordica

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226897255|dbj|BAH56659.1| agamous-like protein [Eucalyptus grandis]

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/146 (49%), Positives = 83/146 (56%), Gaps = 48/146 (32%)

Query: 5   NSGTVTEINAQ---QESVKLRQQIQMLQNSNKHLMRDSLSSLTVKELKQLENRHE----- 56
           N+ TVTEINAQ   QES KLRQQIQMLQNSN+HLM DSLSSL+VKELKQLENR E     
Sbjct: 78  NTSTVTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDSLSSLSVKELKQLENRLERGITR 137

Query: 57  ---------------------------------------FQQANMATGQELNAIHALASQ 77
                                                   QQ NM  G ++N + ALAS+
Sbjct: 138 IRSKKHEMLLTEIEYLQKKEIELENESVFLRTKIAEVDRIQQGNMVAGPQVNVMEALASR 197

Query: 78  NFFGPAIIEGGGSAYSHPDKKILHLG 103
           NFF   ++E GG+AYSH DKK+LHLG
Sbjct: 198 NFFPSNMVE-GGTAYSHSDKKVLHLG 222

Source: Eucalyptus grandis

Species: Eucalyptus grandis

Genus: Eucalyptus

Family: Myrtaceae

Order: Myrtales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|60100358|gb|AAX13306.1| MADS box protein AGL11 [Lotus japonicus] gi|388513815|gb|AFK44969.1| unknown [Lotus japonicus]

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/140 (51%), Positives = 78/140 (55%), Gaps = 47/140 (33%)

Query: 11  EINAQ---QESVKLRQQIQMLQNSNKHLMRDSLSSLTVKELKQLENRHE----------- 56
           EINAQ   QES KLRQQIQMLQNSN+HLM D+LS+LTVKELKQLENR E           
Sbjct: 84  EINAQYYQQESAKLRQQIQMLQNSNRHLMGDALSTLTVKELKQLENRLERGITRIRSKKH 143

Query: 57  ---------------------------------FQQANMATGQELNAIHALASQNFFGPA 83
                                             QQ NM +GQELNAI ALAS+NFF P 
Sbjct: 144 EMLLAEIEYFQKREIELENENLCLRTKITDVERIQQVNMVSGQELNAIQALASRNFFNPP 203

Query: 84  IIEGGGSAYSHPDKKILHLG 103
           +IE G S    PDKKILHLG
Sbjct: 204 MIEDGTSYPQQPDKKILHLG 223

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	103
TAIR|locus:2140578	256	STK "AT4G09960" [Arabidopsis t	0.504	0.203	0.727	7.9e-14
UNIPROTKB|Q43616	225	fbp7 "Floral binding protein n	0.533	0.244	0.637	1.5e-12
UNIPROTKB|Q40882	228	fbp11 "Fbp11 protein" [Petunia	0.533	0.241	0.620	3.9e-12
UNIPROTKB|Q2QW53	270	MADS13 "MADS-box transcription	0.495	0.188	0.625	6.5e-11
UNIPROTKB|Q9ZS30	264	gaga1 "MADS-box protein, GAGA1	0.495	0.193	0.5	1.6e-06
UNIPROTKB|Q40885	242	AG1 "Floral homeotic protein A	0.504	0.214	0.436	1.6e-06
UNIPROTKB|Q9ZS29	246	GAGA2 "MADS-box protein, GAGA2	0.504	0.211	0.474	1.7e-06
UNIPROTKB|Q0DEB8	225	MADS5 "MADS-box transcription	0.553	0.253	0.350	1.8e-05
UNIPROTKB|Q6Q9I2	267	MADS15 "MADS-box transcription	0.524	0.202	0.425	9.4e-05
UNIPROTKB|Q10CQ1	246	MADS14 "MADS-box transcription	0.524	0.219	0.407	0.00013

TAIR|locus:2140578 STK "AT4G09960" [Arabidopsis thaliana (taxid:3702)]

 Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
 Identities = 40/55 (72%), Positives = 46/55 (83%)

Query:     5 NSGTVTEINA---QQESVKLRQQIQMLQNSNKHLMRDSLSSLTVKELKQLENRHE 56
             N+ TV EINA   QQES KLRQQIQ +QNSN++LM DSLSSL+VKELKQ+ENR E
Sbjct:   104 NTSTVQEINAAYYQQESAKLRQQIQTIQNSNRNLMGDSLSSLSVKELKQVENRLE 158

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0048440 "carpel development" evidence=IMP

GO:0048481 "ovule development" evidence=IGI;RCA;IMP

GO:0048316 "seed development" evidence=IGI

GO:0080155 "regulation of double fertilization forming a zygote and endosperm" evidence=IGI

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0009886 "post-embryonic morphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0048441 "petal development" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

UNIPROTKB|Q43616 fbp7 "Floral binding protein number 7" [Petunia x hybrida (taxid:4102)]

 Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 37/58 (63%), Positives = 45/58 (77%)

Query:     2 ELINSGTVTEINAQ---QESVKLRQQIQMLQNSNKHLMRDSLSSLTVKELKQLENRHE 56
             E  N+ T  E+NAQ   QES KLRQQIQ++QNSN+HL+ + LSSL V+ELKQLENR E
Sbjct:    75 ETSNAFTTQELNAQFYQQESKKLRQQIQLIQNSNRHLVGEGLSSLNVRELKQLENRLE 132

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q40882 fbp11 "Fbp11 protein" [Petunia x hybrida (taxid:4102)]

 Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
 Identities = 36/58 (62%), Positives = 45/58 (77%)

Query:     2 ELINSGTVTEINAQ---QESVKLRQQIQMLQNSNKHLMRDSLSSLTVKELKQLENRHE 56
             E  N+ T  E+NAQ   QES KLRQQIQ+LQN+N+HL+ + LS+L V+ELKQLENR E
Sbjct:    75 ETSNACTTQELNAQFYQQESKKLRQQIQLLQNTNRHLVGEGLSALNVRELKQLENRLE 132

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q2QW53 MADS13 "MADS-box transcription factor 13" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 154 (59.3 bits), Expect = 6.5e-11, P = 6.5e-11
 Identities = 35/56 (62%), Positives = 45/56 (80%)

Query:     6 SGT-VTEINAQQ----ESVKLRQQIQMLQNSNKHLMRDSLSSLTVKELKQLENRHE 56
             SG  + E+NAQQ    ES KLR QIQMLQN+NKHL+ D++S+L++KELKQLE+R E
Sbjct:    80 SGAPLIEVNAQQYYQQESAKLRHQIQMLQNTNKHLVGDNVSNLSLKELKQLESRLE 135

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0048283 "indeterminate inflorescence morphogenesis" evidence=IMP

GO:0048481 "ovule development" evidence=IMP

UNIPROTKB|Q9ZS30 gaga1 "MADS-box protein, GAGA1" [Gerbera hybrid cultivar (taxid:18101)]

 Score = 115 (45.5 bits), Expect = 1.6e-06, P = 1.6e-06
 Identities = 29/58 (50%), Positives = 37/58 (63%)

Query:     6 SGTVTEINAQ---QESVKLRQQIQMLQNSNK----HLMRDSLSSLTVKELKQLENRHE 56
             SGTV E N Q   QE+ KLRQQI  LQN N+    ++M +SL  + VK+LK LE + E
Sbjct:   111 SGTVAEANTQYYQQEAAKLRQQIANLQNQNRQFYRNIMGESLGDMPVKDLKNLEGKLE 168

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q40885 AG1 "Floral homeotic protein AGAMOUS" [Petunia x hybrida (taxid:4102)]

 Score = 114 (45.2 bits), Expect = 1.6e-06, P = 1.6e-06
 Identities = 24/55 (43%), Positives = 39/55 (70%)

Query:     5 NSGTVTEINAQ---QESVKLRQQIQMLQNSNKHLMRDSLSSLTVKELKQLENRHE 56
             N+G++ E NAQ   QE+ KLR QI  LQN N++ + +SL++L +++L+ LE + E
Sbjct:    94 NTGSIAEANAQYYQQEASKLRAQIGNLQNQNRNFLGESLAALNLRDLRNLEQKIE 148

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q9ZS29 GAGA2 "MADS-box protein, GAGA2" [Gerbera hybrid cultivar (taxid:18101)]

 Score = 114 (45.2 bits), Expect = 1.7e-06, P = 1.7e-06
 Identities = 28/59 (47%), Positives = 40/59 (67%)

Query:     5 NSGTVTEINAQ---QESVKLRQQIQMLQNSNK----HLMRDSLSSLTVKELKQLENRHE 56
             +SG+V E NAQ   QE+ KLRQQI  LQN N+    ++M +SL ++  K+LK LE++ E
Sbjct:    93 SSGSVAEANAQFYQQEAAKLRQQIANLQNQNRQFYRNIMGESLGNMPAKDLKNLESKLE 151

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q0DEB8 MADS5 "MADS-box transcription factor 5" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 104 (41.7 bits), Expect = 1.8e-05, P = 1.8e-05
 Identities = 20/57 (35%), Positives = 39/57 (68%)

Query:    10 TEINAQQESVKLRQQIQMLQNSNKHLMRDSLSSLTVKELKQLENRHEFQQANMATGQ 66
             TE++  QE +KL+ +++ LQ + ++L+ + L  L++KEL+QLEN+ E    N+ + +
Sbjct:    88 TELSNYQEYLKLKTRVEFLQTTQRNLLGEDLVPLSLKELEQLENQIEISLMNIRSSK 144

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q6Q9I2 MADS15 "MADS-box transcription factor 15" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 99 (39.9 bits), Expect = 9.4e-05, P = 9.4e-05
 Identities = 23/54 (42%), Positives = 36/54 (66%)

Query:     3 LINSGTVTEINAQQESVKLRQQIQMLQNSNKHLMRDSLSSLTVKELKQLENRHE 56
             LI++ + +E N   E  KL+ +I+ +Q  +KHLM + L SL +KEL+QLE + E
Sbjct:    80 LISAESESEGNWCHEYRKLKAKIETIQKCHKHLMGEDLESLNLKELQQLEQQLE 133

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q10CQ1 MADS14 "MADS-box transcription factor 14" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 97 (39.2 bits), Expect = 0.00013, P = 0.00013
 Identities = 22/54 (40%), Positives = 35/54 (64%)

Query:     3 LINSGTVTEINAQQESVKLRQQIQMLQNSNKHLMRDSLSSLTVKELKQLENRHE 56
             LI++ + T+ N   E  KL+ +++ +Q   KHLM + L SL +KEL+QLE + E
Sbjct:    80 LISAESDTQGNWCHEYRKLKAKVETIQKCQKHLMGEDLESLNLKELQQLEQQLE 133

GO:0005515 "protein binding" evidence=IPI

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	103
pfam01486	100	pfam01486, K-box, K-box region	5e-09

>gnl|CDD|216525 pfam01486, K-box, K-box region

 Score = 49.1 bits (118), Expect = 5e-09
 Identities = 19/40 (47%), Positives = 30/40 (75%)

Query: 15 QQESVKLRQQIQMLQNSNKHLMRDSLSSLTVKELKQLENR 54
          QQE+ KL++Q + LQ   +HL+ + L SL++KEL+QLE +
Sbjct: 18 QQEAAKLKKQNENLQREQRHLLGEDLGSLSLKELQQLEQQ 57

The K-box region is commonly found associated with SRF-type transcription factors see pfam00319. The K-box is a possible coiled-coil structure. Possible role in multimer formation. Length = 100

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	103
PF01486	100	K-box: K-box region; InterPro: IPR002487 MADS gene	99.08
PF06698	59	DUF1192: Protein of unknown function (DUF1192); In	81.84

>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development

Probab=99.08  E-value=3.4e-10  Score=75.81  Aligned_cols=44  Identities=48%  Similarity=0.635  Sum_probs=42.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCHHHHHHHHHHHH
Q 047958           13 NAQQESVKLRQQIQMLQNSNKHLMRDSLSSLTVKELKQLENRHE   56 (103)
Q Consensus        13 ~~~~E~~~Lr~eie~Lq~~~R~l~GEdL~~Ls~~EL~~LE~qLe   56 (103)
                      .++.++++|+.+++.|+..+|+|+|+||++|+++||.+||++|+
T Consensus        16 ~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le   59 (100)
T PF01486_consen   16 ELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLE   59 (100)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhh
Confidence            34899999999999999999999999999999999999999999

The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length

Probab=81.84  E-value=1  Score=27.96  Aligned_cols=19  Identities=37%  Similarity=0.487  Sum_probs=16.2

Q ss_pred             ccCCCCCCCCCHHHHHHHH
Q 047958           34 HLMRDSLSSLTVKELKQLE   52 (103)
Q Consensus        34 ~l~GEdL~~Ls~~EL~~LE   52 (103)
                      +..|+||+.||++||..==
T Consensus        12 ~~ig~dLs~lSv~EL~~RI   30 (59)
T PF06698_consen   12 HEIGEDLSLLSVEELEERI   30 (59)
T ss_pred             cccCCCchhcCHHHHHHHH
Confidence            6789999999999997533

The function of this family is unknown.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	103
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	8e-05

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 38.4 bits (88), Expect = 8e-05
 Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 2/31 (6%)

Query: 22 RQQIQMLQNSNKHLMRDSLSSLTVKELKQLE 52
          +Q ++ LQ S K    DS  +L +K    +E
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIK--ATME 47

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00