Citrus Sinensis ID: 047992
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 868 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FXH1 | 894 | Pentatricopeptide repeat- | yes | no | 0.982 | 0.954 | 0.603 | 0.0 | |
| Q0WN60 | 970 | Pentatricopeptide repeat- | no | no | 0.911 | 0.815 | 0.322 | 1e-123 | |
| Q9SV26 | 768 | Pentatricopeptide repeat- | no | no | 0.854 | 0.966 | 0.323 | 1e-121 | |
| Q9SHZ8 | 786 | Pentatricopeptide repeat- | no | no | 0.816 | 0.902 | 0.333 | 1e-119 | |
| Q3E6Q1 | 809 | Pentatricopeptide repeat- | no | no | 0.798 | 0.856 | 0.325 | 1e-117 | |
| Q9LNU6 | 760 | Pentatricopeptide repeat- | no | no | 0.813 | 0.928 | 0.312 | 1e-116 | |
| Q9SVP7 | 1064 | Pentatricopeptide repeat- | no | no | 0.943 | 0.769 | 0.292 | 1e-115 | |
| Q7Y211 | 890 | Pentatricopeptide repeat- | no | no | 0.850 | 0.829 | 0.322 | 1e-114 | |
| Q9SN39 | 871 | Pentatricopeptide repeat- | no | no | 0.806 | 0.803 | 0.322 | 1e-113 | |
| Q9M1V3 | 960 | Pentatricopeptide repeat- | no | no | 0.967 | 0.875 | 0.306 | 1e-113 |
| >sp|Q9FXH1|PPR52_ARATH Pentatricopeptide repeat-containing protein At1g19720 OS=Arabidopsis thaliana GN=DYW7 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 1070 bits (2768), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 517/856 (60%), Positives = 652/856 (76%), Gaps = 3/856 (0%)
Query: 16 LTKKSNPRF-RDTHLDFLCGNGRLNEAITVLDSIATQGAKVRRNTYINLLQACIDSNSIH 74
TKK P D D+LC NG L EA LDS+ QG+KV+R+TY+ LL++CIDS SIH
Sbjct: 39 FTKKKEPNIIPDEQFDYLCRNGSLLEAEKALDSLFQQGSKVKRSTYLKLLESCIDSGSIH 98
Query: 75 LARKLHAFLNLVTEIDVFVKTKLLSVYAKCGCLDDAREVFEDMRERNLYTWSAMIGAYSR 134
L R LHA L TE DVFV+TKLLS+YAKCGC+ DAR+VF+ MRERNL+TWSAMIGAYSR
Sbjct: 99 LGRILHARFGLFTEPDVFVETKLLSMYAKCGCIADARKVFDSMRERNLFTWSAMIGAYSR 158
Query: 135 DQRWREVVELFFLMVQDGLFPDDFLFPKILQACGNCGDFEAGKLMHSLVIKLGMSCVRRV 194
+ RWREV +LF LM++DG+ PDDFLFPKILQ C NCGD EAGK++HS+VIKLGMS RV
Sbjct: 159 ENRWREVAKLFRLMMKDGVLPDDFLFPKILQGCANCGDVEAGKVIHSVVIKLGMSSCLRV 218
Query: 195 RNSVLAVYVKCGKLIWARRFFESMDEKDGVAWNSMISGYFQIGENDEAHRLFDKMCREEI 254
NS+LAVY KCG+L +A +FF M E+D +AWNS++ Y Q G+++EA L +M +E I
Sbjct: 219 SNSILAVYAKCGELDFATKFFRRMRERDVIAWNSVLLAYCQNGKHEEAVELVKEMEKEGI 278
Query: 255 KLGVVTFNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALD 314
G+VT+NILI YNQLG+CD AM+++++ME+ GIT DVFTWT MISG NG QALD
Sbjct: 279 SPGLVTWNILIGGYNQLGKCDAAMDLMQKMETFGITADVFTWTAMISGLIHNGMRYQALD 338
Query: 315 LFKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYS 374
+F++M GV+PN VTI SA+SAC+ LK + G E+HS+AVKMGF DDVLVGNSL++MYS
Sbjct: 339 MFRKMFLAGVVPNAVTIMSAVSACSCLKVINQGSEVHSIAVKMGFIDDVLVGNSLVDMYS 398
Query: 375 KCEELEAAERVFDMIKDKDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNV 434
KC +LE A +VFD +K+KDVY+WNSMI GYCQAGYCGKAYELF +MQ++++ PN+ITWN
Sbjct: 399 KCGKLEDARKVFDSVKNKDVYTWNSMITGYCQAGYCGKAYELFTRMQDANLRPNIITWNT 458
Query: 435 LISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSS 494
+ISGYI+NG+E EA+DLFQRM K+ KV+RNTA+WN +IAGY Q G+K+ AL +FRKMQ S
Sbjct: 459 MISGYIKNGDEGEAMDLFQRMEKDGKVQRNTATWNLIIAGYIQNGKKDEALELFRKMQFS 518
Query: 495 CFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYS 554
F PN VTILS+LPACA L+ + V+EIHGCVLRR+L++ V N+L DTYAKSG+I YS
Sbjct: 519 RFMPNSVTILSLLPACANLLGAKMVREIHGCVLRRNLDAIHAVKNALTDTYAKSGDIEYS 578
Query: 555 RTIFDGMSSKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLA 614
RTIF GM +KDIITWNSLI GYVLHG + AL LF+QMK+ G+ PNRGT SIILAH L
Sbjct: 579 RTIFLGMETKDIITWNSLIGGYVLHGSYGPALALFNQMKTQGITPNRGTLSSIILAHGLM 638
Query: 615 GMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPIEPDSSIWEA 674
G VD GKKVF SI Y IIP +EH SAM+ LYGR+ +LEEA++FI++M I+ ++ IWE+
Sbjct: 639 GNVDEGKKVFYSIANDYHIIPALEHCSAMVYLYGRANRLEEALQFIQEMNIQSETPIWES 698
Query: 675 LLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLERENTR 734
LT CRIHG+ID+A+ A E LF LEP + + ++ QIYA+ K +L+ K R+N
Sbjct: 699 FLTGCRIHGDIDMAIHAAENLFSLEPENTATESIVSQIYALGAKLGRSLEGNKPRRDNLL 758
Query: 735 RNSFGQCWIEVKNLVYTFVTGGWSESYSDLLYSWLQNVPENVTARSSHSG-LCIEEEEKE 793
+ GQ WIEV+NL++TF TG S+ +D+LY ++ + ++G L IEEE +E
Sbjct: 759 KKPLGQSWIEVRNLIHTFTTGDQSKLCTDVLYPLVEKMSRLDNRSDQYNGELWIEEEGRE 818
Query: 794 EISGIHSEKLALAFALIGSSQAPH-TIRIVKNIRMCVHCHETAKYVSMMHHCEIFLADSK 852
E GIHSEK A+AF LI SS A TIRI+KN+RMC CH+TAKYVS + C+I L D++
Sbjct: 819 ETCGIHSEKFAMAFGLISSSGASKTTIRILKNLRMCRDCHDTAKYVSKRYGCDILLEDTR 878
Query: 853 CLHHFKNGQCSCGDYW 868
CLHHFKNG CSC DYW
Sbjct: 879 CLHHFKNGDCSCKDYW 894
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WN60|PPR48_ARATH Pentatricopeptide repeat-containing protein At1g18485 OS=Arabidopsis thaliana GN=PCMP-H8 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 443 bits (1140), Expect = e-123, Method: Compositional matrix adjust.
Identities = 289/896 (32%), Positives = 461/896 (51%), Gaps = 105/896 (11%)
Query: 63 LLQACIDSNSIHLARKLHAFLNLVTEI--DVFVKTKLLSVYAKCGCLDDAREVFEDMRER 120
LLQA I + RK+H ++ T + D + T+++++YA CG DD+R VF+ +R +
Sbjct: 90 LLQASGKRKDIEMGRKIHQLVSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDALRSK 149
Query: 121 NLYTWSAMIGAYSRDQRWREVVELFFLMVQD-GLFPDDFLFPKILQACGNCGDFEAGKLM 179
NL+ W+A+I +YSR++ + EV+E F M+ L PD F +P +++AC D G +
Sbjct: 150 NLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLAV 209
Query: 180 HSLVIKLGMSCVRRVRNSVLAVYVKCGKLIWARRFFESMDEKDGVAWNSMISGYFQIGEN 239
H LV+K G+ V N++++ Y G + A + F+ M E++ V+WNSMI + G +
Sbjct: 210 HGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFS 269
Query: 240 DEAHRLFDKMCRE------------------------EIKLG---------------VVT 260
+E+ L +M E EI LG +V
Sbjct: 270 EESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVL 329
Query: 261 FNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMS 320
N L+ Y++ G C +M+ +M + +V +W M+ GF+ G T D+ ++M
Sbjct: 330 NNALMDMYSKCG-CITNAQMIFKMNN---NKNVVSWNTMVGGFSAEGDTHGTFDVLRQML 385
Query: 321 FVG--VMPNGVTITSAISACTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEE 378
G V + VTI +A+ C L E+H ++K F + LV N+ + Y+KC
Sbjct: 386 AGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGS 445
Query: 379 LEAAERVFDMIKDKDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNVLISG 438
L A+RVF I+ K V SWN++I G+ Q+ + + ++M+ S + P+ T L+S
Sbjct: 446 LSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSA 505
Query: 439 -----------------------------------YIQNGNEDEAVDLFQRMGKNDKVKR 463
YI G LF M DK
Sbjct: 506 CSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAM--EDK--- 560
Query: 464 NTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIH 523
+ SWN++I GY Q G + ALGVFR+M ++++ V AC+ L + +E H
Sbjct: 561 SLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAH 620
Query: 524 GCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMSSKDIITWNSLICGYVLHGFWH 583
L+ LE + SLID YAK+G+I S +F+G+ K +WN++I GY +HG
Sbjct: 621 AYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAK 680
Query: 584 AALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAM 643
A+ LF++M+ G P+ TFL ++ A + +G++ G + + + + P ++HY+ +
Sbjct: 681 EAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACV 740
Query: 644 IDLYGRSGKLEEAMEFI-EDMPIEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGD 702
ID+ GR+G+L++A+ + E+M E D IW++LL++CRIH N+++ +LF+LEP
Sbjct: 741 IDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEK 800
Query: 703 VLIQRLILQIYAICGKPEDALKVRKLERENTRRNSFGQCWIEVKNLVYTFVTG-----GW 757
L+ +YA GK ED KVR+ E + R G WIE+ V++FV G G+
Sbjct: 801 PENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNRKVFSFVVGERFLDGF 860
Query: 758 SE-----SYSDLLYSWLQNVPENVTARSSHSGLCIEEEEKEEISGIHSEKLALAFALIGS 812
E S ++ S + P+ ++ + S EEE+ E++ G HSEKLAL + LI +
Sbjct: 861 EEIKSLWSILEMKISKMGYRPDTMSVQHDLS----EEEKIEQLRG-HSEKLALTYGLIKT 915
Query: 813 SQAPHTIRIVKNIRMCVHCHETAKYVSMMHHCEIFLADSKCLHHFKNGQCSCGDYW 868
S+ TIR+ KN+R+CV CH AK +S + EI + D+K HHFKNG CSCGDYW
Sbjct: 916 SEGT-TIRVYKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFKNGVCSCGDYW 970
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SV26|PP297_ARATH Pentatricopeptide repeat-containing protein At4g01030, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H65 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 435 bits (1119), Expect = e-121, Method: Compositional matrix adjust.
Identities = 254/784 (32%), Positives = 410/784 (52%), Gaps = 42/784 (5%)
Query: 90 DVFVKTKLLSVYAKCGCLDDAREVFEDMRERNLYTWSAMIGAYSRDQRWREVVELFFLMV 149
D V + + Y +C L A ++F++M +R+ W+ ++ R W + VELF M
Sbjct: 22 DTRVVSASMGFYGRCVSLGFANKLFDEMPKRDDLAWNEIVMVNLRSGNWEKAVELFREMQ 81
Query: 150 QDGLFPDDFLFPKILQACGNCGDFEAGKLMHSLVIKLGMSCVRRVRNSVLAVYVKCGKLI 209
G D K+LQ C N F G+ +H V++LG+ + NS++ +Y + GKL
Sbjct: 82 FSGAKAYDSTMVKLLQVCSNKEGFAEGRQIHGYVLRLGLESNVSMCNSLIVMYSRNGKLE 141
Query: 210 WARRFFESMDEKDGVAWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTFNILIRSYN 269
+R+ F SM +++ +WNS++S SY
Sbjct: 142 LSRKVFNSMKDRNLSSWNSILS-----------------------------------SYT 166
Query: 270 QLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGV 329
+LG D A+ ++ ME G+ PD+ TW ++SG+A G + A+ + K M G+ P+
Sbjct: 167 KLGYVDDAIGLLDEMEICGLKPDIVTWNSLLSGYASKGLSKDAIAVLKRMQIAGLKPSTS 226
Query: 330 TITSAISACTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEELEAAERVFDMI 389
+I+S + A + L +G IH ++ DV V +LI+MY K L A VFDM+
Sbjct: 227 SISSLLQAVAEPGHLKLGKAIHGYILRNQLWYDVYVETTLIDMYIKTGYLPYARMVFDMM 286
Query: 390 KDKDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNVLISGYIQNGNEDEAV 449
K++ +WNS+++G A A L I+M++ + P+ ITWN L SGY G ++A+
Sbjct: 287 DAKNIVAWNSLVSGLSYACLLKDAEALMIRMEKEGIKPDAITWNSLASGYATLGKPEKAL 346
Query: 450 DLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPA 509
D+ +M K V N SW ++ +G + G NAL VF KMQ PN T+ ++L
Sbjct: 347 DVIGKM-KEKGVAPNVVSWTAIFSGCSKNGNFRNALKVFIKMQEEGVGPNAATMSTLLKI 405
Query: 510 CAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMSSKDIITW 569
L + KE+HG LR++L V +L+D Y KSG++ + IF G+ +K + +W
Sbjct: 406 LGCLSLLHSGKEVHGFCLRKNLICDAYVATALVDMYGKSGDLQSAIEIFWGIKNKSLASW 465
Query: 570 NSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITE 629
N ++ GY + G + F M G++P+ TF S++ +G+V G K F +
Sbjct: 466 NCMLMGYAMFGRGEEGIAAFSVMLEAGMEPDAITFTSVLSVCKNSGLVQEGWKYFDLMRS 525
Query: 630 CYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPIEPDSSIWEALLTACRIHGNIDLAV 689
Y IIP IEH S M+DL GRSG L+EA +FI+ M ++PD++IW A L++C+IH +++LA
Sbjct: 526 RYGIIPTIEHCSCMVDLLGRSGYLDEAWDFIQTMSLKPDATIWGAFLSSCKIHRDLELAE 585
Query: 690 LAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLERENTRRNSFGQCWIEVKNLV 749
+A +RL LEP + +++ +Y+ + ED ++R L R N R WI++ V
Sbjct: 586 IAWKRLQVLEPHNSANYMMMINLYSNLNRWEDVERIRNLMRNNRVRVQDLWSWIQIDQTV 645
Query: 750 YTFVTGGWSES-YSDLLYSWLQNVPENVTARSSHSGLCIEEE----EKEEISGIHSEKLA 804
+ F G + D+ + + V E + CI ++ EKE++ H+EKLA
Sbjct: 646 HIFYAEGKTHPDEGDIYFELYKLVSEMKKSGYVPDTSCIHQDISDSEKEKLLMGHTEKLA 705
Query: 805 LAFALIGSSQAPHTIRIVKNIRMCVHCHETAKYVSMMHHCEIFLADSKCLHHFKNGQCSC 864
+ + LI + IR+VKN +C H AKY+S++ + EI L + +HHF++G+CSC
Sbjct: 706 MTYGLI-KKKGLAPIRVVKNTNICSDSHTVAKYMSVLRNREIVLQEGARVHHFRDGKCSC 764
Query: 865 GDYW 868
D W
Sbjct: 765 NDSW 768
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 429 bits (1103), Expect = e-119, Method: Compositional matrix adjust.
Identities = 268/803 (33%), Positives = 419/803 (52%), Gaps = 94/803 (11%)
Query: 76 ARKLHAFLNLVTEIDVFVKTKLLSVYAKCGCLDDAREVFEDMRERNLYTWSAMIGAYSRD 135
ARKL + L T F +LS Y+K G +D E F+ + +R+ +W+ MI Y
Sbjct: 68 ARKLFDEMPLRT---AFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNI 124
Query: 136 QRWREVVELFFLMVQDGLFPDDFLFPKILQACGNCGDFEAGKLMHSLVIKLGMSCVRRVR 195
++ + + + MV++G+ P F +L + E GK +HS ++KLG+ V
Sbjct: 125 GQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVS 184
Query: 196 NSVLAVYVKCGKLIWARRFFESMDEKDGVAWNSMISGYFQIGENDEAHRLFDKMCREEIK 255
NS+L +Y KCG + A+ +FD+M +I
Sbjct: 185 NSLLNMYAKCGDPMMAKF-------------------------------VFDRMVVRDIS 213
Query: 256 LGVVTFNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDL 315
++N +I + Q+GQ D+AM ++M D+ TW MISGF Q G +ALD+
Sbjct: 214 ----SWNAMIALHMQVGQMDLAMAQFEQMAE----RDIVTWNSMISGFNQRGYDLRALDI 265
Query: 316 FKEMSFVGVM-PNGVTITSAISACTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYS 374
F +M ++ P+ T+ S +SAC +L+ L +G +IHS V GF +V N+LI+MYS
Sbjct: 266 FSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYS 325
Query: 375 KCEELEAAERVFDMIKDKDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNV 434
+C +E A R+ + KD+ I G+
Sbjct: 326 RCGGVETARRLIEQRGTKDL-----KIEGF----------------------------TA 352
Query: 435 LISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSS 494
L+ GYI+ G+ ++A ++F + D V +W ++I GY+Q G A+ +FR M
Sbjct: 353 LLDGYIKLGDMNQAKNIFVSLKDRDVV-----AWTAMIVGYEQHGSYGEAINLFRSMVGG 407
Query: 495 CFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYS 554
PN T+ ++L + L + + K+IHG ++ S+ V N+LI YAK+GNI +
Sbjct: 408 GQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSA 467
Query: 555 RTIFDGMS-SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSL 613
FD + +D ++W S+I HG AL+LF+ M GL+P+ T++ + A +
Sbjct: 468 SRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTH 527
Query: 614 AGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPIEPDSSIWE 673
AG+V+ G++ F + + +IIP + HY+ M+DL+GR+G L+EA EFIE MPIEPD W
Sbjct: 528 AGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWG 587
Query: 674 ALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLERENT 733
+LL+ACR+H NIDL +A ERL LEP + + +Y+ CGK E+A K+RK ++
Sbjct: 588 SLLSACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGR 647
Query: 734 RRNSFGQCWIEVKNLVYTFVTGGWSESYSDLLYSWLQNVPENV--------TARSSHSGL 785
+ G WIEVK+ V+ F + + +Y ++ + + + TA H
Sbjct: 648 VKKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIYMTMKKIWDEIKKMGYVPDTASVLHD-- 705
Query: 786 CIEEEEKEEISGIHSEKLALAFALIGSSQAPHTIRIVKNIRMCVHCHETAKYVSMMHHCE 845
+EEE KE+I HSEKLA+AF LI S+ T+RI+KN+R+C CH K++S + E
Sbjct: 706 -LEEEVKEQILRHHSEKLAIAFGLI-STPDKTTLRIMKNLRVCNDCHTAIKFISKLVGRE 763
Query: 846 IFLADSKCLHHFKNGQCSCGDYW 868
I + D+ HHFK+G CSC DYW
Sbjct: 764 IIVRDTTRFHHFKDGFCSCRDYW 786
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290 OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 424 bits (1090), Expect = e-117, Method: Compositional matrix adjust.
Identities = 250/769 (32%), Positives = 406/769 (52%), Gaps = 76/769 (9%)
Query: 170 CGDFEAGKLMHSLVIKLGMSCVRRVRNSVLAVYVKCGKLIWARRFFESMDEKDGVAWNSM 229
C + + + LV K G+ + +++++ + G + A R FE +D K V +++M
Sbjct: 47 CSSLKELRQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTM 106
Query: 230 ISGYFQIGENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQLGQCDVAMEMVKRMESLGI 289
+ G+ ++ + D+A + F +M ++++ V F L++ + V E+ + G
Sbjct: 107 LKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGF 166
Query: 290 TPDVF-------------------------------TWTCMISGFAQNGRTSQALDLFKE 318
+ D+F +W +++G++QNG AL++ K
Sbjct: 167 SLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKS 226
Query: 319 MSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEE 378
M + P+ +TI S + A + L+ +++G EIH A++ GF V + +L++MY+KC
Sbjct: 227 MCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGS 286
Query: 379 LEAAERVFDMIKDKDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPP----------- 427
LE A ++FD + +++V SWNSMI Y Q +A +F KM + V P
Sbjct: 287 LETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHA 346
Query: 428 ------------------------NVITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKR 463
NV N LIS Y + D A +F ++ R
Sbjct: 347 CADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQS-----R 401
Query: 464 NTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIH 523
SWN++I G+ Q G+ +AL F +M+S P+ T +SV+ A A L ++ K IH
Sbjct: 402 TLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIH 461
Query: 524 GCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMSSKDIITWNSLICGYVLHGFWH 583
G V+R L+ ++ V +L+D YAK G I+ +R IFD MS + + TWN++I GY HGF
Sbjct: 462 GVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGK 521
Query: 584 AALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAM 643
AAL+LF++M+ +KPN TFLS+I A S +G+V+ G K F + E Y I ++HY AM
Sbjct: 522 AALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAM 581
Query: 644 IDLYGRSGKLEEAMEFIEDMPIEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDV 703
+DL GR+G+L EA +FI MP++P +++ A+L AC+IH N++ A A ERLF+L P D
Sbjct: 582 VDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDG 641
Query: 704 LIQRLILQIYAICGKPEDALKVRKLERENTRRNSFGQCWIEVKNLVYTFVTGGWSESYSD 763
L+ IY E +VR R + G +E+KN V++F +G + S
Sbjct: 642 GYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSK 701
Query: 764 LLYSWLQ----NVPENVTARSSHSGLCIEEEEKEEISGIHSEKLALAFALIGSSQAPHTI 819
+Y++L+ ++ E ++ L +E + KE++ HSEKLA++F L+ ++ A TI
Sbjct: 702 KIYAFLEKLICHIKEAGYVPDTNLVLGVENDVKEQLLSTHSEKLAISFGLLNTT-AGTTI 760
Query: 820 RIVKNIRMCVHCHETAKYVSMMHHCEIFLADSKCLHHFKNGQCSCGDYW 868
+ KN+R+C CH KY+S++ EI + D + HHFKNG CSCGDYW
Sbjct: 761 HVRKNLRVCADCHNATKYISLVTGREIVVRDMQRFHHFKNGACSCGDYW 809
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g20230 OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 419 bits (1077), Expect = e-116, Method: Compositional matrix adjust.
Identities = 245/785 (31%), Positives = 415/785 (52%), Gaps = 79/785 (10%)
Query: 90 DVFVKTKLLSVYAKCGCLDDAREVFEDMRERNLYTWSAMIGAYSRDQRWREVVELFFLMV 149
D ++ KL++ Y+ C +DA V + + + +Y++S++I A ++ + + + + +F M
Sbjct: 49 DGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAKLFTQSIGVFSRMF 108
Query: 150 QDGLFPDDFLFPKILQACGNCGDFEAGKLMHSLVIKLGMSCVRRVRNSVLAVYVKCGKLI 209
GL PD + P + + C F+ GK +H + G+ V+ S+ +Y++CG++
Sbjct: 109 SHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRM- 167
Query: 210 WARRFFESMDEKDGVAWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTFNILIRSYN 269
+A ++FD+M ++ VVT + L+ +Y
Sbjct: 168 ------------------------------GDARKVFDRMSDKD----VVTCSALLCAYA 193
Query: 270 QLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGV 329
+ G + + ++ MES GI ++ +W ++SGF ++G +A+ +F+++ +G P+ V
Sbjct: 194 RKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQV 253
Query: 330 TITSAISACTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEELEAAERVFDMI 389
T++S + + D + L MG IH +K G D V +++I+MY K + +F+
Sbjct: 254 TVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFN-- 311
Query: 390 KDKDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNVLISGYIQNGNEDEAV 449
+ M AG C N I+G +NG D+A+
Sbjct: 312 ------QFEMMEAGVC---------------------------NAYITGLSRNGLVDKAL 338
Query: 450 DLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPA 509
++F+ + K ++ N SW S+IAG Q G+ AL +FR+MQ + PN VTI S+LPA
Sbjct: 339 EMFE-LFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPA 397
Query: 510 CAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMSSKDIITW 569
C + A + HG +R L ++ V ++LID YAK G I S+ +F+ M +K+++ W
Sbjct: 398 CGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCW 457
Query: 570 NSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITE 629
NSL+ G+ +HG + +F+ + LKP+ +F S++ A G+ D G K F ++E
Sbjct: 458 NSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSE 517
Query: 630 CYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPIEPDSSIWEALLTACRIHGNIDLAV 689
Y I P +EHYS M++L GR+GKL+EA + I++MP EPDS +W ALL +CR+ N+DLA
Sbjct: 518 EYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAE 577
Query: 690 LAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVR-KLERENTRRNSFGQCWIEVKNL 748
+A E+LF LEP + L+ IYA G + +R K+E ++N G WI+VKN
Sbjct: 578 IAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNP-GCSWIQVKNR 636
Query: 749 VYTFVTGGWSESYSDLLYSWLQNVPENVTARSSHSGL-----CIEEEEKEEISGIHSEKL 803
VYT + G S D + + + + + L +EE+E+E++ HSEKL
Sbjct: 637 VYTLLAGDKSHPQIDQITEKMDEISKEMRKSGHRPNLDFALHDVEEQEQEQMLWGHSEKL 696
Query: 804 ALAFALIGSSQAPHTIRIVKNIRMCVHCHETAKYVSMMHHCEIFLADSKCLHHFKNGQCS 863
A+ F L+ + ++++KN+R+C CH K++S EIF+ D+ HHFK+G CS
Sbjct: 697 AVVFGLLNTPDGT-PLQVIKNLRICGDCHAVIKFISSYAGREIFIRDTNRFHHFKDGICS 755
Query: 864 CGDYW 868
CGD+W
Sbjct: 756 CGDFW 760
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 415 bits (1066), Expect = e-115, Method: Compositional matrix adjust.
Identities = 270/922 (29%), Positives = 439/922 (47%), Gaps = 103/922 (11%)
Query: 32 LCGNGRLNEAITVLDSIATQGAKVRRNTYINLLQACID-SNSIHLARKLHA-FLNLVTEI 89
L + E + + ++ T+ +L+AC S + + ++HA L
Sbjct: 161 LASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQGLRD 220
Query: 90 DVFVKTKLLSVYAKCGCLDDAREVFEDMRERNLYTWSAMIGAYSRDQRWREVVELFFLMV 149
V L+ +Y++ G +D AR VF+ +R ++ +W AMI S+++ E + LF M
Sbjct: 221 STVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMY 280
Query: 150 QDGLFPDDFLFPKILQACGNCGDFEAGKLMHSLVIKLGMSCVRRVRNSVLAVYVKCGKLI 209
G+ P + F +L AC E G+ +H LV+KLG S V N+++++Y G LI
Sbjct: 281 VLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLI 340
Query: 210 WARRFFESMDEKDGVAWNSMISGYFQIGENDEAHRLFDKM------------------CR 251
A F +M ++D V +N++I+G Q G ++A LF +M C
Sbjct: 341 SAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACS 400
Query: 252 EE-------------IKLGVVTFN----ILIRSYNQLGQCDVAMEMVKRMESLGITPDVF 294
+ KLG + N L+ Y + + A++ E +V
Sbjct: 401 ADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETE----VENVV 456
Query: 295 TWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLA 354
W M+ + + +F++M ++PN T S + C L L +G +IHS
Sbjct: 457 LWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQI 516
Query: 355 VKMGFTDDVLVGNSLINMYSKCEELEAAERVFDMIKDKDVYSWNSMIAGYCQAGYCGKAY 414
+K F + V + LI+MY+K +L+ A + KDV SW +MIAGY Q + KA
Sbjct: 517 IKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKAL 576
Query: 415 ELFIKMQE---------------------------------------SDVPPNVITWNVL 435
F +M + SD+P N L
Sbjct: 577 TTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQ----NAL 632
Query: 436 ISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSC 495
++ Y + G +E+ F++ D + +WN+L++G+QQ G AL VF +M
Sbjct: 633 VTLYSRCGKIEESYLAFEQTEAGDNI-----AWNALVSGFQQSGNNEEALRVFVRMNREG 687
Query: 496 FYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSR 555
N T S + A + + K++H + + +S V N+LI YAK G+I +
Sbjct: 688 IDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAE 747
Query: 556 TIFDGMSSKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAG 615
F +S+K+ ++WN++I Y HGF ALD FDQM ++PN T + ++ A S G
Sbjct: 748 KQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIG 807
Query: 616 MVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPIEPDSSIWEAL 675
+VD G F S+ Y + P EHY ++D+ R+G L A EFI++MPI+PD+ +W L
Sbjct: 808 LVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTL 867
Query: 676 LTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLERENTRR 735
L+AC +H N+++ A L +LEP D L+ +YA+ K + R+ +E +
Sbjct: 868 LSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVK 927
Query: 736 NSFGQCWIEVKNLVYTFVTGGWSESYSDLLYSWLQNVPENVTARSSHSGLC--------- 786
GQ WIEVKN +++F G + +D ++ + Q ++T R+S G
Sbjct: 928 KEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQ----DLTKRASEIGYVQDCFSLLNE 983
Query: 787 IEEEEKEEISGIHSEKLALAFALIGSSQAPHTIRIVKNIRMCVHCHETAKYVSMMHHCEI 846
++ E+K+ I IHSEKLA++F L+ S A I ++KN+R+C CH K+VS + + EI
Sbjct: 984 LQHEQKDPIIFIHSEKLAISFGLL-SLPATVPINVMKNLRVCNDCHAWIKFVSKVSNREI 1042
Query: 847 FLADSKCLHHFKNGQCSCGDYW 868
+ D+ HHF+ G CSC DYW
Sbjct: 1043 IVRDAYRFHHFEGGACSCKDYW 1064
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 414 bits (1065), Expect = e-114, Method: Compositional matrix adjust.
Identities = 268/832 (32%), Positives = 428/832 (51%), Gaps = 94/832 (11%)
Query: 125 WSAMIGAYSRDQRWREVVELFFLMVQDGLFPDDFLFPKILQACGNCGDFEAGKLMHSLVI 184
W ++ + R RE V + M+ G+ PD++ FP +L+A + D E GK +H+ V
Sbjct: 65 WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124
Query: 185 KLGMSCVR-RVRNSVLAVYVKCGKLIWARRFFESMDEKDGVAWNSMISGYFQIGENDEAH 243
K G V N+++ +Y KCG + F+ + E++ V+WNS+IS + + A
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 184
Query: 244 RLFDKMCREEIK------LGVVT-------------------------------FNILIR 266
F M E ++ + VVT N L+
Sbjct: 185 EAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFIINTLVA 244
Query: 267 SYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMP 326
Y +LG+ + + + S G D+ TW ++S QN + +AL+ +EM GV P
Sbjct: 245 MYGKLGKLASSKVL---LGSFG-GRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEP 300
Query: 327 NGVTITSAISACTDLKALAMGMEIHSLAVKMGFTDD-VLVGNSLINMYSKCEELEAAERV 385
+ TI+S + AC+ L+ L G E+H+ A+K G D+ VG++L++MY C+++ + RV
Sbjct: 301 DEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRV 360
Query: 386 FDMIKDKDVYSWNSMIAGYCQAGYCGKAYELFIKMQES-DVPPNVITWNVLISGYIQNG- 443
FD + D+ + WN+MIAGY Q + +A LFI M+ES + N T ++ +++G
Sbjct: 361 FDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGA 420
Query: 444 -NEDEAV--------------------DLFQRMGKNDKV--------KRNTASWNSLIAG 474
+ EA+ D++ R+GK D R+ +WN++I G
Sbjct: 421 FSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITG 480
Query: 475 YQQLGQKNNALGVFRKMQS-----------SCFYPNCVTILSVLPACAYLVASNKVKEIH 523
Y +AL + KMQ+ PN +T++++LP+CA L A K KEIH
Sbjct: 481 YVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIH 540
Query: 524 GCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMSSKDIITWNSLICGYVLHGFWH 583
++ +L + + V ++L+D YAK G + SR +FD + K++ITWN +I Y +HG
Sbjct: 541 AYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQ 600
Query: 584 AALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAM 643
A+DL M G+KPN TF+S+ A S +GMVD G ++F + Y + P +HY+ +
Sbjct: 601 EAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACV 660
Query: 644 IDLYGRSGKLEEAMEFIEDMPIEPD-SSIWEALLTACRIHGNIDLAVLAIERLFDLEPGD 702
+DL GR+G+++EA + + MP + + + W +LL A RIH N+++ +A + L LEP
Sbjct: 661 VDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNV 720
Query: 703 VLIQRLILQIYAICGKPEDALKVRKLERENTRRNSFGQCWIEVKNLVYTFVTGGWSESYS 762
L+ IY+ G + A +VR+ +E R G WIE + V+ FV G S S
Sbjct: 721 ASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQS 780
Query: 763 DLLYSWLQNV-----PENVTARSSHSGLCIEEEEKEEISGIHSEKLALAFALIGSSQAPH 817
+ L +L+ + E +S +EE+EKE + HSEKLA+AF ++ +S P
Sbjct: 781 EKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTS--PG 838
Query: 818 T-IRIVKNIRMCVHCHETAKYVSMMHHCEIFLADSKCLHHFKNGQCSCGDYW 868
T IR+ KN+R+C CH K++S + EI L D + H FKNG CSCGDYW
Sbjct: 839 TIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRFKNGTCSCGDYW 890
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 410 bits (1055), Expect = e-113, Method: Compositional matrix adjust.
Identities = 251/778 (32%), Positives = 405/778 (52%), Gaps = 78/778 (10%)
Query: 163 ILQACGNCGDFEAGKLMHSLVIKLGMSCVRRVRNSVLAVYVKCGKLIWARRFFESMDEKD 222
+LQ C + + GK + + + G + + + +Y CG L A R F+ + +
Sbjct: 100 VLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEK 159
Query: 223 GVAWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTFNILIRSY-------------- 268
+ WN +++ + G+ + LF KM +++ TF+ + +S+
Sbjct: 160 ALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHG 219
Query: 269 ----------NQLGQCDVAMEMV-KRMESLG------ITPDVFTWTCMISGFAQNGRTSQ 311
N +G VA + +R++S DV +W +I+G+ NG +
Sbjct: 220 FILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEK 279
Query: 312 ALDLFKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLIN 371
L +F +M G+ + TI S + C D + +++G +HS+ VK F+ + N+L++
Sbjct: 280 GLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLD 339
Query: 372 MYSKCEELEAAERVFDMIKDKDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVIT 431
MYSKC +L++A+ VF + D+ V S+ SMIAGY + G G+A +LF +M+E + P+V T
Sbjct: 340 MYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYT 399
Query: 432 ----------------------W-------------NVLISGYIQNGNEDEAVDLFQRMG 456
W N L+ Y + G+ EA +F M
Sbjct: 400 VTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMR 459
Query: 457 KNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKM-QSSCFYPNCVTILSVLPACAYLVA 515
D + SWN++I GY + N AL +F + + F P+ T+ VLPACA L A
Sbjct: 460 VKDII-----SWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSA 514
Query: 516 SNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMSSKDIITWNSLICG 575
+K +EIHG ++R S V NSL+D YAK G ++ + +FD ++SKD+++W +I G
Sbjct: 515 FDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAG 574
Query: 576 YVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIP 635
Y +HGF A+ LF+QM+ G++ + +F+S++ A S +G+VD G + F + +I P
Sbjct: 575 YGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEP 634
Query: 636 MIEHYSAMIDLYGRSGKLEEAMEFIEDMPIEPDSSIWEALLTACRIHGNIDLAVLAIERL 695
+EHY+ ++D+ R+G L +A FIE+MPI PD++IW ALL CRIH ++ LA E++
Sbjct: 635 TVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKV 694
Query: 696 FDLEPGDVLIQRLILQIYAICGKPEDALKVRKLERENTRRNSFGQCWIEVKNLVYTFVTG 755
F+LEP + L+ IYA K E ++RK + R + G WIE+K V FV G
Sbjct: 695 FELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAG 754
Query: 756 GWSESYSDLLYSWLQNV-----PENVTARSSHSGLCIEEEEKEEISGIHSEKLALAFALI 810
S ++ + ++L+ V E + + ++ + EE EKEE HSEKLA+A +I
Sbjct: 755 DSSNPETENIEAFLRKVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGII 814
Query: 811 GSSQAPHTIRIVKNIRMCVHCHETAKYVSMMHHCEIFLADSKCLHHFKNGQCSCGDYW 868
S IR+ KN+R+C CHE AK++S + EI L DS H FK+G CSC +W
Sbjct: 815 SSGHGK-IIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 871
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M1V3|PP296_ARATH Pentatricopeptide repeat-containing protein At3g63370 OS=Arabidopsis thaliana GN=PCMP-H83 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 410 bits (1055), Expect = e-113, Method: Compositional matrix adjust.
Identities = 284/928 (30%), Positives = 468/928 (50%), Gaps = 88/928 (9%)
Query: 18 KKSNPRFRDTHLDFLCGNGRLNEAITVLDSIATQGAKVRRNTYINLLQACIDSNSIHLAR 77
++SN + C +G L EA LD ++ + V Y+ L+ C ++ R
Sbjct: 44 RQSNQPVQVPSPKLACFDGVLTEAFQRLD-VSENNSPVEAFAYV--LELCGKRRAVSQGR 100
Query: 78 KLHA--FLNLVT-EIDVFVKTKLLSVYAKCGCLDDAREVFEDMRERNLYTWSAMIGAYSR 134
+LH+ F + E+D F+ KL+ +Y KCG LDDA +VF++M +R + W+ MIGAY
Sbjct: 101 QLHSRIFKTFPSFELD-FLAGKLVFMYGKCGSLDDAEKVFDEMPDRTAFAWNTMIGAYVS 159
Query: 135 DQRWREVVELFFLMVQDGLFPDDFLFPKILQACGNCGDFEAGKLMHSLVIKLGMSCVRRV 194
+ + L++ M +G+ FP +L+AC D +G +HSL++KLG +
Sbjct: 160 NGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDIRSGSELHSLLVKLGYHSTGFI 219
Query: 195 RNSVLAVYVKCGKLIWARRFFESMDEK-DGVAWNSMISGYFQIGENDEAHRLFDKM---- 249
N+++++Y K L ARR F+ EK D V WNS++S Y G++ E LF +M
Sbjct: 220 VNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSYSTSGKSLETLELFREMHMTG 279
Query: 250 ----------------------CREEIKLGVV----------TFNILIRSYNQLGQCDVA 277
+EI V+ N LI Y + G+ A
Sbjct: 280 PAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQA 339
Query: 278 MEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISA 337
++++M + DV TW +I G+ QN +AL+ F +M G + V++TS I+A
Sbjct: 340 ERILRQMNN----ADVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAA 395
Query: 338 CTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEELEAAERVFDMIKDKDVYSW 397
L L GME+H+ +K G+ ++ VGN+LI+MYSKC R F + DKD+ SW
Sbjct: 396 SGRLSNLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISW 455
Query: 398 NSMIAGYCQAGYCGKAYELFIK----------------MQESDVPPNV-----ITWNVLI 436
++IAGY Q +A ELF ++ S V ++ I ++L
Sbjct: 456 TTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCHILR 515
Query: 437 SGYIQNGNEDEAVDLF---QRMGKNDKV-----KRNTASWNSLIAGYQQLGQKNNALGVF 488
G + ++E VD++ + MG +V ++ SW S+I+ G ++ A+ +F
Sbjct: 516 KGLLDTVIQNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVELF 575
Query: 489 RKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRS--LESSLPVMNSLIDTYA 546
R+M + + V +L +L A A L A NK +EIH +LR+ LE S+ V +++D YA
Sbjct: 576 RRMVETGLSADSVALLCILSAAASLSALNKGREIHCYLLRKGFCLEGSIAV--AVVDMYA 633
Query: 547 KSGNIVYSRTIFDGMSSKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLS 606
G++ ++ +FD + K ++ + S+I Y +HG AA++LFD+M+ + P+ +FL+
Sbjct: 634 CCGDLQSAKAVFDRIERKGLLQYTSMINAYGMHGCGKAAVELFDKMRHENVSPDHISFLA 693
Query: 607 IILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPIE 666
++ A S AG++D G+ + Y++ P EHY ++D+ GR+ + EA EF++ M E
Sbjct: 694 LLYACSHAGLLDEGRGFLKIMEHEYELEPWPEHYVCLVDMLGRANCVVEAFEFVKMMKTE 753
Query: 667 PDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVR 726
P + +W ALL ACR H ++ +A +RL +LEP + L+ ++A G+ D KVR
Sbjct: 754 PTAEVWCALLAACRSHSEKEIGEIAAQRLLELEPKNPGNLVLVSNVFAEQGRWNDVEKVR 813
Query: 727 KLERENTRRNSFGQCWIEVKNLVYTFVTGGWSESYSDLLYSWLQNVPENVTARSSHSGLC 786
+ + G WIE+ V+ F S S +Y L V + +
Sbjct: 814 AKMKASGMEKHPGCSWIEMDGKVHKFTARDKSHPESKEIYEKLSEVTRKLEREVGYVADT 873
Query: 787 ------IEEEEKEEISGIHSEKLALAFALIGSSQAPHTIRIVKNIRMCVHCHETAKYVSM 840
++E EK ++ HSE++A+A+ L+ + +RI KN+R+C CH K VS
Sbjct: 874 KFVLHNVDEGEKVQMLHGHSERIAIAYGLLRTPDRA-CLRITKNLRVCRDCHTFCKLVSK 932
Query: 841 MHHCEIFLADSKCLHHFKNGQCSCGDYW 868
+ +I + D+ HHF++G CSCGD W
Sbjct: 933 LFRRDIVMRDANRFHHFESGLCSCGDSW 960
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 868 | ||||||
| 359492699 | 1545 | PREDICTED: pentatricopeptide repeat-cont | 0.976 | 0.548 | 0.654 | 0.0 | |
| 449470126 | 1463 | PREDICTED: pentatricopeptide repeat-cont | 0.953 | 0.565 | 0.620 | 0.0 | |
| 30686506 | 894 | pentatricopeptide repeat-containing prot | 0.982 | 0.954 | 0.603 | 0.0 | |
| 449523327 | 1090 | PREDICTED: pentatricopeptide repeat-cont | 0.927 | 0.738 | 0.621 | 0.0 | |
| 297850366 | 1490 | hypothetical protein ARALYDRAFT_472198 [ | 0.945 | 0.551 | 0.610 | 0.0 | |
| 357490817 | 887 | Pentatricopeptide repeat-containing prot | 0.973 | 0.952 | 0.569 | 0.0 | |
| 356551872 | 945 | PREDICTED: pentatricopeptide repeat-cont | 0.898 | 0.825 | 0.578 | 0.0 | |
| 255538774 | 1218 | pentatricopeptide repeat-containing prot | 0.687 | 0.490 | 0.611 | 0.0 | |
| 242077973 | 871 | hypothetical protein SORBIDRAFT_07g00138 | 0.887 | 0.884 | 0.479 | 0.0 | |
| 357147690 | 859 | PREDICTED: pentatricopeptide repeat-cont | 0.951 | 0.961 | 0.433 | 0.0 |
| >gi|359492699|ref|XP_002280968.2| PREDICTED: pentatricopeptide repeat-containing protein At1g19720-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1132 bits (2928), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 555/848 (65%), Positives = 672/848 (79%)
Query: 8 TFQQLHSLLTKKSNPRFRDTHLDFLCGNGRLNEAITVLDSIATQGAKVRRNTYINLLQAC 67
+F ++H LT K P+ D HL+ LC NGRL +AI LD+IA G+ V+ NTY+ LLQ+C
Sbjct: 36 SFTKIHQPLTPKLKPKVTDAHLNHLCKNGRLADAIACLDAIAQGGSNVKPNTYMQLLQSC 95
Query: 68 IDSNSIHLARKLHAFLNLVTEIDVFVKTKLLSVYAKCGCLDDAREVFEDMRERNLYTWSA 127
ID S L RKLHA + L+ E++ FV+TKL+S+YAKCG L +AR+VF +MRERNLY WSA
Sbjct: 96 IDQGSAELGRKLHARIGLLEEMNPFVETKLVSMYAKCGSLGEARKVFGEMRERNLYAWSA 155
Query: 128 MIGAYSRDQRWREVVELFFLMVQDGLFPDDFLFPKILQACGNCGDFEAGKLMHSLVIKLG 187
MIGAYSR+Q WREVV+ FF M++DG+ PD+FL PKILQACGNCGD E GKL+HSLVI+ G
Sbjct: 156 MIGAYSREQMWREVVQHFFFMMEDGIVPDEFLLPKILQACGNCGDAETGKLIHSLVIRCG 215
Query: 188 MSCVRRVRNSVLAVYVKCGKLIWARRFFESMDEKDGVAWNSMISGYFQIGENDEAHRLFD 247
M+ RV NS+LAVY KCG+L ARRFFE+MD +D V+WNS+I+GY Q GE +++H+LF+
Sbjct: 216 MNFNIRVSNSILAVYAKCGRLSCARRFFENMDYRDRVSWNSIITGYCQKGELEKSHQLFE 275
Query: 248 KMCREEIKLGVVTFNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNG 307
KM E I+ G+VT+NILI SY+Q G+CD AME++K+MES I PDVFTWT MISGFAQN
Sbjct: 276 KMQEEGIEPGLVTWNILINSYSQSGKCDDAMELMKKMESFRIVPDVFTWTSMISGFAQNN 335
Query: 308 RTSQALDLFKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLAVKMGFTDDVLVGN 367
R SQAL+LF+EM G+ PNGVT+TS ISAC LKAL GME+HS+AVK+G +D+LVGN
Sbjct: 336 RRSQALELFREMLLAGIEPNGVTVTSGISACASLKALKKGMELHSVAVKIGCVEDLLVGN 395
Query: 368 SLINMYSKCEELEAAERVFDMIKDKDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPP 427
SLI+MYSK ELE A RVFDMI KDVY+WNSMI GYCQAGYCGKAY+LFIKM ESDVPP
Sbjct: 396 SLIDMYSKSGELEDARRVFDMILKKDVYTWNSMIGGYCQAGYCGKAYDLFIKMHESDVPP 455
Query: 428 NVITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGV 487
NV+TWN +ISGYIQNG+ED+A+DLF RM K+ +KR+TASWNSLIAGY Q G KN ALG+
Sbjct: 456 NVVTWNAMISGYIQNGDEDQAMDLFHRMEKDGLIKRDTASWNSLIAGYLQNGHKNKALGI 515
Query: 488 FRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAK 547
FR+MQS C PN VT+LS+LPACA LVA+ KVKEIHGC+LRR+L S L V N LIDTYAK
Sbjct: 516 FRQMQSFCIRPNSVTMLSILPACANLVAAKKVKEIHGCILRRNLGSELSVANCLIDTYAK 575
Query: 548 SGNIVYSRTIFDGMSSKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSI 607
SGNIVY++TIF G+SSKDII+WNSLI GYVLHG +ALDLFDQM G+KP+RGTFLSI
Sbjct: 576 SGNIVYAQTIFQGISSKDIISWNSLIAGYVLHGCSDSALDLFDQMTKMGVKPSRGTFLSI 635
Query: 608 ILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPIEP 667
I A SL+GMVD GK+VF S+ E YQI+P +EH+SAMIDL GRSGKL EA+EFIEDM IEP
Sbjct: 636 IYAFSLSGMVDKGKQVFSSMMEDYQILPGLEHHSAMIDLLGRSGKLGEAIEFIEDMAIEP 695
Query: 668 DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRK 727
DS IW ALLTA +IHGNI LA+ A E L +LEP + I + ILQ+YA+ GK ED K+RK
Sbjct: 696 DSCIWAALLTASKIHGNIGLAIRAGECLLELEPSNFSIHQQILQMYALSGKFEDVSKLRK 755
Query: 728 LERENTRRNSFGQCWIEVKNLVYTFVTGGWSESYSDLLYSWLQNVPENVTARSSHSGLCI 787
E+ + + G WIE KN+V+TFV S Y D L+SW++NV V A H L I
Sbjct: 756 SEKRSETKQPLGCSWIEAKNIVHTFVADDRSRPYFDFLHSWIENVARKVKAPDQHDRLFI 815
Query: 788 EEEEKEEISGIHSEKLALAFALIGSSQAPHTIRIVKNIRMCVHCHETAKYVSMMHHCEIF 847
EEEEKEEI G+HSEKLALAFALI S AP ++RIVKN+RMC CH TAK++SM++ CEI+
Sbjct: 816 EEEEKEEIGGVHSEKLALAFALIDPSCAPRSVRIVKNLRMCGDCHGTAKFLSMLYSCEIY 875
Query: 848 LADSKCLH 855
L+DSKCLH
Sbjct: 876 LSDSKCLH 883
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449470126|ref|XP_004152769.1| PREDICTED: pentatricopeptide repeat-containing protein At1g19720-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1073 bits (2774), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 516/831 (62%), Positives = 646/831 (77%), Gaps = 3/831 (0%)
Query: 15 LLTKKSNPRFRDTHLDFLCGNGRLNEAITVLDSIATQGAKVRRNTYINLLQACIDSNSIH 74
T K +F D HL +LC NG L EAIT +DSI+ +G+K+ NTYINLLQ CID SI
Sbjct: 38 FFTYKLTSKFNDDHLSYLCSNGLLREAITAIDSISKRGSKLSTNTYINLLQTCIDVGSIE 97
Query: 75 LARKLHAFLNLVTEIDVFVKTKLLSVYAKCGCLDDAREVFEDMRERNLYTWSAMIGAYSR 134
L R+LH + LV ++ FV+TKL+S+YAKCGCL DAR+VF+ M+ERNLYTWSAMIGAYSR
Sbjct: 98 LGRELHVRMGLVHRVNPFVETKLVSMYAKCGCLKDARKVFDGMQERNLYTWSAMIGAYSR 157
Query: 135 DQRWREVVELFFLMVQDGLFPDDFLFPKILQACGNCGDFEAGKLMHSLVIKLGMSCVRRV 194
+QRW+EVVELFFLM+ DG+ PD FLFPKILQACGNC D E KL+HSLVI+ G+SC R+
Sbjct: 158 EQRWKEVVELFFLMMGDGVLPDAFLFPKILQACGNCEDLETVKLIHSLVIRCGLSCYMRL 217
Query: 195 RNSVLAVYVKCGKLIWARRFFESMDEKDGVAWNSMISGYFQIGENDEAHRLFDKMCREEI 254
NS+L +VKCGKL AR+FF +MDE+DGV+WN MI+GY Q G DEA RL D M +
Sbjct: 218 SNSILTAFVKCGKLSLARKFFGNMDERDGVSWNVMIAGYCQKGNGDEARRLLDTMSNQGF 277
Query: 255 KLGVVTFNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALD 314
K G+VT+NI+I SY+QLG CD+ +++ K+MES+G+ PDV+TWT MISGF+Q+ R SQALD
Sbjct: 278 KPGLVTYNIMIASYSQLGDCDLVIDLKKKMESVGLAPDVYTWTSMISGFSQSSRISQALD 337
Query: 315 LFKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYS 374
FK+M GV PN +TI SA SAC LK+L G+EIH A+KMG + LVGNSLI+MYS
Sbjct: 338 FFKKMILAGVEPNTITIASATSACASLKSLQNGLEIHCFAIKMGIARETLVGNSLIDMYS 397
Query: 375 KCEELEAAERVFDMIKDKDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNV 434
KC +LEAA VFD I +KDVY+WNSMI GYCQAGY GKAYELF++++ES V PNV+TWN
Sbjct: 398 KCGKLEAARHVFDTILEKDVYTWNSMIGGYCQAGYGGKAYELFMRLRESTVMPNVVTWNA 457
Query: 435 LISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSS 494
+ISG IQNG+ED+A+DLFQ M K+ VKRNTASWNSLIAGY QLG+KN AL +FR+MQS
Sbjct: 458 MISGCIQNGDEDQAMDLFQIMEKDGGVKRNTASWNSLIAGYHQLGEKNKALAIFRQMQSL 517
Query: 495 CFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYS 554
F PN VTILS+LPACA ++A K+KEIHGCVLRR+LES L V NSL+DTYAKSGNI YS
Sbjct: 518 NFSPNSVTILSILPACANVMAEKKIKEIHGCVLRRNLESELAVANSLVDTYAKSGNIKYS 577
Query: 555 RTIFDGMSSKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLA 614
RT+F+GMSSKDIITWNS+I GY+LHG +A LFDQM++ G++PNRGT SII A+ +A
Sbjct: 578 RTVFNGMSSKDIITWNSIIAGYILHGCSDSAFQLFDQMRNLGIRPNRGTLASIIHAYGIA 637
Query: 615 GMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPIEPDSSIWEA 674
GMVD G+ VF SITE +QI+P ++HY AM+DLYGRSG+L +A+EFIEDMPIEPD SIW +
Sbjct: 638 GMVDKGRHVFSSITEEHQILPTLDHYLAMVDLYGRSGRLADAIEFIEDMPIEPDVSIWTS 697
Query: 675 LLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLERENTR 734
LLTACR HGN++LAVLA +RL +LEP + +I RL++Q YA+ GK E LKVRKL +E+
Sbjct: 698 LLTACRFHGNLNLAVLAAKRLHELEPDNHVIYRLLVQAYALYGKFEQTLKVRKLGKESAM 757
Query: 735 RNSFGQCWIEVKNLVYTFVTGGWSESYSDLLYSWLQNVPENVTARSSHSGLC-IEEEEKE 793
+ QCW+EV+N V+ FVTG +S D+L +W++++ V ++H L EEE++E
Sbjct: 758 KKCTAQCWVEVRNKVHLFVTG--DQSKLDVLNTWIKSIEGKVKKFNNHHQLSIEEEEKEE 815
Query: 794 EISGIHSEKLALAFALIGSSQAPHTIRIVKNIRMCVHCHETAKYVSMMHHC 844
+I G H EK A AF LIGSS +I+IVKN+RMCV CH+ AKY+S + C
Sbjct: 816 KIGGFHCEKFAFAFGLIGSSHTRKSIKIVKNLRMCVDCHQMAKYISAAYEC 866
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30686506|ref|NP_173402.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75263158|sp|Q9FXH1.1|PPR52_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g19720; AltName: Full=Protein DYW7 gi|10086495|gb|AAG12555.1|AC007797_15 Unknown Protein [Arabidopsis thaliana] gi|332191770|gb|AEE29891.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1070 bits (2768), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 517/856 (60%), Positives = 652/856 (76%), Gaps = 3/856 (0%)
Query: 16 LTKKSNPRF-RDTHLDFLCGNGRLNEAITVLDSIATQGAKVRRNTYINLLQACIDSNSIH 74
TKK P D D+LC NG L EA LDS+ QG+KV+R+TY+ LL++CIDS SIH
Sbjct: 39 FTKKKEPNIIPDEQFDYLCRNGSLLEAEKALDSLFQQGSKVKRSTYLKLLESCIDSGSIH 98
Query: 75 LARKLHAFLNLVTEIDVFVKTKLLSVYAKCGCLDDAREVFEDMRERNLYTWSAMIGAYSR 134
L R LHA L TE DVFV+TKLLS+YAKCGC+ DAR+VF+ MRERNL+TWSAMIGAYSR
Sbjct: 99 LGRILHARFGLFTEPDVFVETKLLSMYAKCGCIADARKVFDSMRERNLFTWSAMIGAYSR 158
Query: 135 DQRWREVVELFFLMVQDGLFPDDFLFPKILQACGNCGDFEAGKLMHSLVIKLGMSCVRRV 194
+ RWREV +LF LM++DG+ PDDFLFPKILQ C NCGD EAGK++HS+VIKLGMS RV
Sbjct: 159 ENRWREVAKLFRLMMKDGVLPDDFLFPKILQGCANCGDVEAGKVIHSVVIKLGMSSCLRV 218
Query: 195 RNSVLAVYVKCGKLIWARRFFESMDEKDGVAWNSMISGYFQIGENDEAHRLFDKMCREEI 254
NS+LAVY KCG+L +A +FF M E+D +AWNS++ Y Q G+++EA L +M +E I
Sbjct: 219 SNSILAVYAKCGELDFATKFFRRMRERDVIAWNSVLLAYCQNGKHEEAVELVKEMEKEGI 278
Query: 255 KLGVVTFNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALD 314
G+VT+NILI YNQLG+CD AM+++++ME+ GIT DVFTWT MISG NG QALD
Sbjct: 279 SPGLVTWNILIGGYNQLGKCDAAMDLMQKMETFGITADVFTWTAMISGLIHNGMRYQALD 338
Query: 315 LFKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYS 374
+F++M GV+PN VTI SA+SAC+ LK + G E+HS+AVKMGF DDVLVGNSL++MYS
Sbjct: 339 MFRKMFLAGVVPNAVTIMSAVSACSCLKVINQGSEVHSIAVKMGFIDDVLVGNSLVDMYS 398
Query: 375 KCEELEAAERVFDMIKDKDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNV 434
KC +LE A +VFD +K+KDVY+WNSMI GYCQAGYCGKAYELF +MQ++++ PN+ITWN
Sbjct: 399 KCGKLEDARKVFDSVKNKDVYTWNSMITGYCQAGYCGKAYELFTRMQDANLRPNIITWNT 458
Query: 435 LISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSS 494
+ISGYI+NG+E EA+DLFQRM K+ KV+RNTA+WN +IAGY Q G+K+ AL +FRKMQ S
Sbjct: 459 MISGYIKNGDEGEAMDLFQRMEKDGKVQRNTATWNLIIAGYIQNGKKDEALELFRKMQFS 518
Query: 495 CFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYS 554
F PN VTILS+LPACA L+ + V+EIHGCVLRR+L++ V N+L DTYAKSG+I YS
Sbjct: 519 RFMPNSVTILSLLPACANLLGAKMVREIHGCVLRRNLDAIHAVKNALTDTYAKSGDIEYS 578
Query: 555 RTIFDGMSSKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLA 614
RTIF GM +KDIITWNSLI GYVLHG + AL LF+QMK+ G+ PNRGT SIILAH L
Sbjct: 579 RTIFLGMETKDIITWNSLIGGYVLHGSYGPALALFNQMKTQGITPNRGTLSSIILAHGLM 638
Query: 615 GMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPIEPDSSIWEA 674
G VD GKKVF SI Y IIP +EH SAM+ LYGR+ +LEEA++FI++M I+ ++ IWE+
Sbjct: 639 GNVDEGKKVFYSIANDYHIIPALEHCSAMVYLYGRANRLEEALQFIQEMNIQSETPIWES 698
Query: 675 LLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLERENTR 734
LT CRIHG+ID+A+ A E LF LEP + + ++ QIYA+ K +L+ K R+N
Sbjct: 699 FLTGCRIHGDIDMAIHAAENLFSLEPENTATESIVSQIYALGAKLGRSLEGNKPRRDNLL 758
Query: 735 RNSFGQCWIEVKNLVYTFVTGGWSESYSDLLYSWLQNVPENVTARSSHSG-LCIEEEEKE 793
+ GQ WIEV+NL++TF TG S+ +D+LY ++ + ++G L IEEE +E
Sbjct: 759 KKPLGQSWIEVRNLIHTFTTGDQSKLCTDVLYPLVEKMSRLDNRSDQYNGELWIEEEGRE 818
Query: 794 EISGIHSEKLALAFALIGSSQAPH-TIRIVKNIRMCVHCHETAKYVSMMHHCEIFLADSK 852
E GIHSEK A+AF LI SS A TIRI+KN+RMC CH+TAKYVS + C+I L D++
Sbjct: 819 ETCGIHSEKFAMAFGLISSSGASKTTIRILKNLRMCRDCHDTAKYVSKRYGCDILLEDTR 878
Query: 853 CLHHFKNGQCSCGDYW 868
CLHHFKNG CSC DYW
Sbjct: 879 CLHHFKNGDCSCKDYW 894
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449523327|ref|XP_004168675.1| PREDICTED: pentatricopeptide repeat-containing protein At1g19720-like, partial [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1038 bits (2685), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 502/808 (62%), Positives = 628/808 (77%), Gaps = 3/808 (0%)
Query: 15 LLTKKSNPRFRDTHLDFLCGNGRLNEAITVLDSIATQGAKVRRNTYINLLQACIDSNSIH 74
T K +F D HL +LC NG L EAIT +DSI+ +G+K+ NTYINLLQ CID SI
Sbjct: 38 FFTYKLTSKFNDDHLSYLCSNGLLREAITAIDSISKRGSKLSTNTYINLLQTCIDVGSIE 97
Query: 75 LARKLHAFLNLVTEIDVFVKTKLLSVYAKCGCLDDAREVFEDMRERNLYTWSAMIGAYSR 134
L R+LH + LV ++ FV+TKL+S+YAKCGCL DAR+VF+ M+ERNLYTWSAMIGAYSR
Sbjct: 98 LGRELHVRMGLVHRVNPFVETKLVSMYAKCGCLKDARKVFDGMQERNLYTWSAMIGAYSR 157
Query: 135 DQRWREVVELFFLMVQDGLFPDDFLFPKILQACGNCGDFEAGKLMHSLVIKLGMSCVRRV 194
+QRW+EVVELFFLM+ DG+ PD FLFPKILQACGNC D E KL+HSLVI+ G+SC R+
Sbjct: 158 EQRWKEVVELFFLMMGDGVLPDAFLFPKILQACGNCEDLETVKLIHSLVIRCGLSCYMRL 217
Query: 195 RNSVLAVYVKCGKLIWARRFFESMDEKDGVAWNSMISGYFQIGENDEAHRLFDKMCREEI 254
NS+L +VKCGKL AR+FF +MDE+DGV+WN MI+GY Q G DEA RL D M +
Sbjct: 218 SNSILTAFVKCGKLSLARKFFGNMDERDGVSWNVMIAGYCQKGNGDEARRLLDTMSNQGF 277
Query: 255 KLGVVTFNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALD 314
K G+VT+NI+I SY+QLG CD+ +++ K+MES+G+ PDV+TWT MISGF+Q+ R SQALD
Sbjct: 278 KPGLVTYNIMIASYSQLGDCDLVIDLKKKMESVGLAPDVYTWTSMISGFSQSSRISQALD 337
Query: 315 LFKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYS 374
FK+M GV PN +TI SA SAC LK+L G+EIH A+KMG + LVGNSLI+MYS
Sbjct: 338 FFKKMILAGVEPNTITIASATSACASLKSLQNGLEIHCFAIKMGIARETLVGNSLIDMYS 397
Query: 375 KCEELEAAERVFDMIKDKDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNV 434
KC +LEAA VFD I +KDVY+WNSMI GYCQAGY GKAYELF++++ES V PNV+TWN
Sbjct: 398 KCGKLEAARHVFDTILEKDVYTWNSMIGGYCQAGYGGKAYELFMRLRESTVMPNVVTWNA 457
Query: 435 LISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSS 494
+ISG IQNG+ED+A+DLFQ M K+ VKRNTASWNSLIAGY QLG+KN AL +FR+MQS
Sbjct: 458 MISGCIQNGDEDQAMDLFQIMEKDGGVKRNTASWNSLIAGYHQLGEKNKALAIFRQMQSL 517
Query: 495 CFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYS 554
F PN VTILS+LPACA ++A K+KEIHGCVLRR+LES L V NSL+DTYAKSGNI YS
Sbjct: 518 NFSPNSVTILSILPACANVMAEKKIKEIHGCVLRRNLESELAVANSLVDTYAKSGNIKYS 577
Query: 555 RTIFDGMSSKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLA 614
RT+F+GMSSKDIITWNS+I GY+LHG +A LFDQM++ G++PNRGT SII A+ +A
Sbjct: 578 RTVFNGMSSKDIITWNSIIAGYILHGCSDSAFQLFDQMRNLGIRPNRGTLASIIHAYGIA 637
Query: 615 GMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPIEPDSSIWEA 674
GMVD G+ VF SITE +QI+P ++HY AM+DLYGRSG+L +A+EFIEDMPIEPD SIW +
Sbjct: 638 GMVDKGRHVFSSITEEHQILPTLDHYLAMVDLYGRSGRLADAIEFIEDMPIEPDVSIWTS 697
Query: 675 LLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLERENTR 734
LLTACR HGN++LAVLA +RL +LEP + +I RL++Q YA+ GK E LKVRKL +E+
Sbjct: 698 LLTACRFHGNLNLAVLAAKRLHELEPDNHVIYRLLVQAYALYGKFEQTLKVRKLGKESAM 757
Query: 735 RNSFGQCWIEVKNLVYTFVTGGWSESYSDLLYSWLQNVPENVTARSSHSGLC-IEEEEKE 793
+ QCW+EV+N V+ FVTG +S D+L +W++++ V ++H L EEE++E
Sbjct: 758 KKCTAQCWVEVRNKVHLFVTG--DQSKLDVLNTWIKSIEGKVKKFNNHHQLSIEEEEKEE 815
Query: 794 EISGIHSEKLALAFALIGSSQAPHTIRI 821
+I G H EK A AF LIGSS +I+I
Sbjct: 816 KIGGFHCEKFAFAFGLIGSSHTRKSIKI 843
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297850366|ref|XP_002893064.1| hypothetical protein ARALYDRAFT_472198 [Arabidopsis lyrata subsp. lyrata] gi|297338906|gb|EFH69323.1| hypothetical protein ARALYDRAFT_472198 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1038 bits (2684), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 503/824 (61%), Positives = 635/824 (77%), Gaps = 3/824 (0%)
Query: 16 LTKKSNPRF-RDTHLDFLCGNGRLNEAITVLDSIATQGAKVRRNTYINLLQACIDSNSIH 74
TKK P D LD+LC NG L EA LDS+ QG+KV+R+TY+NLL++CIDS SIH
Sbjct: 39 FTKKKEPNIIPDEQLDYLCRNGSLLEAEKALDSLFQQGSKVKRSTYLNLLESCIDSGSIH 98
Query: 75 LARKLHAFLNLVTEIDVFVKTKLLSVYAKCGCLDDAREVFEDMRERNLYTWSAMIGAYSR 134
L R LHA L E DVFV+TKLLS+YAKCGCL DAR+VF+ MRERNLYTWSAMIGAYSR
Sbjct: 99 LGRILHARFGLFPEPDVFVETKLLSMYAKCGCLVDARKVFDSMRERNLYTWSAMIGAYSR 158
Query: 135 DQRWREVVELFFLMVQDGLFPDDFLFPKILQACGNCGDFEAGKLMHSLVIKLGMSCVRRV 194
+ RWREV +LF LM+++G+ PDDFLFPKILQ C NCGD E GKL+HS+VIKLGMS RV
Sbjct: 159 ENRWREVSKLFRLMMEEGVLPDDFLFPKILQGCANCGDVETGKLIHSVVIKLGMSSCLRV 218
Query: 195 RNSVLAVYVKCGKLIWARRFFESMDEKDGVAWNSMISGYFQIGENDEAHRLFDKMCREEI 254
NS+LAVY KCG+ +A +FF M E+D VAWNS++ Y Q G+++EA L ++M +E I
Sbjct: 219 SNSILAVYAKCGEWDFATKFFRRMKERDVVAWNSVLLAYCQNGKHEEAVELVEEMEKEGI 278
Query: 255 KLGVVTFNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALD 314
G+VT+NILI YNQLG+CD AM+++++ME+ GIT DVFTWT MISG NG QALD
Sbjct: 279 SPGLVTWNILIGGYNQLGKCDAAMDLMQKMENFGITADVFTWTAMISGLIHNGMRYQALD 338
Query: 315 LFKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYS 374
+F++M GV+PN VTI SA+SAC+ LK + +G E+HS+AVKMGF DDVLVGNSL++MYS
Sbjct: 339 MFRKMFLAGVVPNAVTIMSAVSACSYLKVINLGSEVHSIAVKMGFIDDVLVGNSLVDMYS 398
Query: 375 KCEELEAAERVFDMIKDKDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNV 434
KC +LE A +VFD +K+KDVY+WNSMI GYCQAGYCGKAYELF +MQ+++V PN+ITWN
Sbjct: 399 KCGKLEDARKVFDSVKNKDVYTWNSMITGYCQAGYCGKAYELFTRMQDANVRPNIITWNT 458
Query: 435 LISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSS 494
+ISGYI+NG+E EA+DLFQRM K+ KV+RNTA+WN +IAGY Q G+K++AL +FRKMQ S
Sbjct: 459 MISGYIKNGDEGEAMDLFQRMEKDGKVQRNTATWNLIIAGYIQNGKKDDALEIFRKMQFS 518
Query: 495 CFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYS 554
F PN VTILS+LPACA L+ + V+EIHGCVLRR+L++ V N+L DTYAKSG+I YS
Sbjct: 519 RFMPNSVTILSLLPACANLLGTKMVREIHGCVLRRNLDAIHAVKNALTDTYAKSGDIGYS 578
Query: 555 RTIFDGMSSKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLA 614
+TIF GM +KDIITWNSLI GYVLHG + AL+LF+QMK+ G+KPNRGT SIILAH L
Sbjct: 579 KTIFMGMETKDIITWNSLIGGYVLHGSYGPALELFNQMKTQGIKPNRGTLSSIILAHGLM 638
Query: 615 GMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPIEPDSSIWEA 674
G VD GKKVF SI Y IIP +EH SAM+ LYGRS +LEEA++FI++M I+ ++ IWE+
Sbjct: 639 GNVDEGKKVFYSIANDYHIIPALEHCSAMVSLYGRSNRLEEALQFIQEMNIQSETPIWES 698
Query: 675 LLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLERENTR 734
LT CRIHG+ID+A+ A E LF LEP + + + ++ QIYA+ K +L+ +K R+N
Sbjct: 699 FLTGCRIHGDIDMAIHAAENLFSLEPENTVTENIVSQIYALGAKLGRSLEGKKPRRDNLL 758
Query: 735 RNSFGQCWIEVKNLVYTFVTGGWSESYSDLLYSWLQNVPENVTARSSHSG-LCIEEEEKE 793
+ GQ WIEV+NL++TF TG S+ +DLLY W++ + ++G L IEEE +E
Sbjct: 759 KKPLGQSWIEVRNLIHTFTTGDQSKLCTDLLYPWVEKMCRVDNRSDQYNGELLIEEEGRE 818
Query: 794 EISGIHSEKLALAFALIGSSQAPH-TIRIVKNIRMCVHCHETAK 836
E GIHSEK A+AF LI SS+AP TIRI+KN+RMC CH TAK
Sbjct: 819 ETCGIHSEKFAMAFGLISSSRAPKATIRILKNLRMCRDCHNTAK 862
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357490817|ref|XP_003615696.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355517031|gb|AES98654.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 986 bits (2549), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 485/852 (56%), Positives = 632/852 (74%), Gaps = 7/852 (0%)
Query: 17 TKKSNPRFRDTHLDFLCGNGRLNEAITVLDSIATQGAKVRRNTYINLLQACIDSNSIHLA 76
TK S + D+ L+ LC NG L+EA+T+LDS+A QG +V+ TY+NLLQ+CID + I +
Sbjct: 43 TKPSIRKLIDSQLNQLCINGSLSEAVTILDSLAEQGCRVKPITYMNLLQSCIDKDCIFIG 102
Query: 77 RKLHAFLNLVTEIDVFVKTKLLSVYAKCGCLDDAREVFEDMRERNLYTWSAMIGAYSRDQ 136
++LH+ + LV ++ FV+TKL+S+YAKCG L AR+VF +M RNL+TWSAMIG SR++
Sbjct: 103 KELHSRIGLVENVNPFVETKLVSMYAKCGLLGMARKVFNEMSVRNLFTWSAMIGGCSRNK 162
Query: 137 RWREVVELFFLMVQDGLFPDDFLFPKILQACGNCGDFEAGKLMHSLVIKLGMSCVRRVRN 196
W EVV LF+ M++DG+ PD+FL PK+LQACG C D E G+L+HS+VI+ GM + +RN
Sbjct: 163 SWGEVVGLFYAMMRDGVLPDEFLLPKVLQACGKCRDLETGRLIHSMVIRRGMRWSKHLRN 222
Query: 197 SVLAVYVKCGKLIWARRFFESMDEKDGVAWNSMISGYFQIGENDEAHRLFDKMCREEIKL 256
S++AVY KCG++ A++ F+ MDE+D VAWN+MISG+ Q GE +A + FD M ++ ++
Sbjct: 223 SIMAVYAKCGEMDCAKKIFDCMDERDSVAWNAMISGFCQNGEIGQAQKYFDAMQKDGVEP 282
Query: 257 GVVTFNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLF 316
+VT+NILI YNQLG CD+A++++++ME GI PDV+TWT MISGF Q GR S ALDL
Sbjct: 283 SLVTWNILISCYNQLGHCDLAIDLMRKMEWFGIAPDVYTWTSMISGFTQKGRISHALDLL 342
Query: 317 KEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKC 376
KEM GV N +TI SA SAC LK+L+MG+EIHS+AVKM D+VLVGNSLI+MY KC
Sbjct: 343 KEMFLAGVEANNITIASAASACAALKSLSMGLEIHSIAVKMNLVDNVLVGNSLIDMYCKC 402
Query: 377 EELEAAERVFDMIKDKDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNVLI 436
+L+AA+ +FDM+ ++DVYSWNS+I GY QAG+CGKA+ELF+KMQESD PPN+ITWN++I
Sbjct: 403 GDLKAAQHIFDMMSERDVYSWNSIIGGYFQAGFCGKAHELFMKMQESDSPPNIITWNIMI 462
Query: 437 SGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCF 496
+GY+Q+G ED+A+DLF+ + K+ K KRN ASWNSLI+G+ Q GQK+ AL +FR MQ
Sbjct: 463 TGYMQSGAEDQALDLFKSIEKDGKTKRNAASWNSLISGFVQSGQKDKALQIFRNMQFCHI 522
Query: 497 YPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRT 556
PN VTILS+LP CA LVAS KVKEIH +RR L S L V N LID+YAKSGN++YS+
Sbjct: 523 LPNSVTILSILPVCANLVASKKVKEIHCFAVRRILVSELSVSNLLIDSYAKSGNLMYSKN 582
Query: 557 IFDGMSSKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGM 616
IF+ +S KD ++WNS++ YVLHG +ALDLF QM+ GL+PNRGTF SI+LA+ AGM
Sbjct: 583 IFNELSWKDAVSWNSMLSSYVLHGCSESALDLFYQMRKQGLQPNRGTFASILLAYGHAGM 642
Query: 617 VDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPIEPDSSIWEALL 676
VD GK VF IT+ Y + +EHYSAM+ L GRSGKL EA++FI+ MPIEP+SS+W ALL
Sbjct: 643 VDEGKSVFSCITKDYLVRQGMEHYSAMVYLLGRSGKLAEALDFIQSMPIEPNSSVWGALL 702
Query: 677 TACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLERENTRRN 736
TACRIH N +AVLA +R+ + EPG+ + + L+ Q Y++CGK E E E
Sbjct: 703 TACRIHRNFGVAVLAGKRMLEFEPGNNITRHLLSQAYSLCGKFEP-------EGEKAVNK 755
Query: 737 SFGQCWIEVKNLVYTFVTGGWSESYSDLLYSWLQNVPENVTARSSHSGLCIEEEEKEEIS 796
GQ WIE N+V+TFV G S Y D L+SWL+ V NV S + L IEEEEKE S
Sbjct: 756 PIGQSWIERNNVVHTFVVGDQSNPYLDKLHSWLKRVAVNVKTHVSDNELYIEEEEKENTS 815
Query: 797 GIHSEKLALAFALIGSSQAPHTIRIVKNIRMCVHCHETAKYVSMMHHCEIFLADSKCLHH 856
+HSEKLA AFALI P +RIVK +RMC CH+TAKY+SM + CEI+L+DS CLHH
Sbjct: 816 SVHSEKLAFAFALIDPHNKPQILRIVKKLRMCRDCHDTAKYISMAYGCEIYLSDSNCLHH 875
Query: 857 FKNGQCSCGDYW 868
FK G CSC DYW
Sbjct: 876 FKGGHCSCRDYW 887
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356551872|ref|XP_003544296.1| PREDICTED: pentatricopeptide repeat-containing protein At1g19720-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 939 bits (2428), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 452/781 (57%), Positives = 602/781 (77%), Gaps = 1/781 (0%)
Query: 16 LTKKSNPRFRDTHLDFLCGNGRLNEAITVLDSIATQGAKVRRNTYINLLQACIDSNSIHL 75
+T++S+P+ DT L+ LC NG L+EA+ +LDS+A QG+KVR T++NLLQACID + I +
Sbjct: 43 MTQRSHPKLVDTQLNQLCANGSLSEAVAILDSLAQQGSKVRPITFMNLLQACIDKDCILV 102
Query: 76 ARKLHAFLNLVTEIDVFVKTKLLSVYAKCGCLDDAREVFEDMRERNLYTWSAMIGAYSRD 135
R+LH + LV +++ FV+TKL+S+YAKCG LD+AR+VF++MRERNL+TWSAMIGA SRD
Sbjct: 103 GRELHTRIGLVRKVNPFVETKLVSMYAKCGHLDEARKVFDEMRERNLFTWSAMIGACSRD 162
Query: 136 QRWREVVELFFLMVQDGLFPDDFLFPKILQACGNCGDFEAGKLMHSLVIKLGMSCVRRVR 195
+W EVVELF+ M+Q G+ PDDFL PK+L+ACG D E G+L+HSLVI+ GM V
Sbjct: 163 LKWEEVVELFYDMMQHGVLPDDFLLPKVLKACGKFRDIETGRLIHSLVIRGGMCSSLHVN 222
Query: 196 NSVLAVYVKCGKLIWARRFFESMDEKDGVAWNSMISGYFQIGENDEAHRLFDKMCREEIK 255
NS+LAVY KCG++ A + F MDE++ V+WN +I+GY Q GE ++A + FD M E ++
Sbjct: 223 NSILAVYAKCGEMSCAEKIFRRMDERNCVSWNVIITGYCQRGEIEQAQKYFDAMQEEGME 282
Query: 256 LGVVTFNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDL 315
G+VT+NILI SY+QLG CD+AM+++++MES GITPDV+TWT MISGF Q GR ++A DL
Sbjct: 283 PGLVTWNILIASYSQLGHCDIAMDLMRKMESFGITPDVYTWTSMISGFTQKGRINEAFDL 342
Query: 316 FKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSK 375
++M VGV PN +TI SA SAC +K+L+MG EIHS+AVK DD+L+GNSLI+MY+K
Sbjct: 343 LRDMLIVGVEPNSITIASAASACASVKSLSMGSEIHSIAVKTSMVDDILIGNSLIDMYAK 402
Query: 376 CEELEAAERVFDMIKDKDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNVL 435
+LEAA+ +FD++ ++DVYSWNS+I GYCQAG+CGKA+ELF+KMQESD PPNV+TWNV+
Sbjct: 403 GGDLEAAQSIFDVMLERDVYSWNSIIGGYCQAGFCGKAHELFMKMQESDSPPNVVTWNVM 462
Query: 436 ISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSC 495
I+G++QNG+EDEA++LF R+ K+ K+K N ASWNSLI+G+ Q QK+ AL +FR+MQ S
Sbjct: 463 ITGFMQNGDEDEALNLFLRIEKDGKIKPNVASWNSLISGFLQNRQKDKALQIFRQMQFSN 522
Query: 496 FYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSR 555
PN VT+L++LPAC LVA+ KVKEIH C RR+L S L V N+ ID+YAKSGNI+YSR
Sbjct: 523 MAPNLVTVLTILPACTNLVAAKKVKEIHCCATRRNLVSELSVSNTFIDSYAKSGNIMYSR 582
Query: 556 TIFDGMSSKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAG 615
+FDG+S KDII+WNSL+ GYVLHG +ALDLFDQM+ GL P+R T SII A+S A
Sbjct: 583 KVFDGLSPKDIISWNSLLSGYVLHGCSESALDLFDQMRKDGLHPSRVTLTSIISAYSHAE 642
Query: 616 MVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPIEPDSSIWEAL 675
MVD GK F +I+E YQI +EHYSAM+ L GRSGKL +A+EFI++MP+EP+SS+W AL
Sbjct: 643 MVDEGKHAFSNISEEYQIRLDLEHYSAMVYLLGRSGKLAKALEFIQNMPVEPNSSVWAAL 702
Query: 676 LTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLERENTRR 735
LTACRIH N +A+ A E + +L+P +++ Q L+ Q Y++CGK +A K+ KLE+E +
Sbjct: 703 LTACRIHKNFGMAIFAGEHMLELDPENIITQHLLSQAYSVCGKSWEAQKMTKLEKEKFVK 762
Query: 736 NSFGQCWIEVKNLVYTFVTG-GWSESYSDLLYSWLQNVPENVTARSSHSGLCIEEEEKEE 794
GQ WIE+ N+V+TFV G S Y D ++SWL+ V ENV A S +GL IEEEEKE
Sbjct: 763 MPVGQSWIEMNNMVHTFVVGDDQSIPYLDKIHSWLKRVGENVKAHISDNGLRIEEEEKEN 822
Query: 795 I 795
I
Sbjct: 823 I 823
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255538774|ref|XP_002510452.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223551153|gb|EEF52639.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 758 bits (1956), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/600 (61%), Positives = 461/600 (76%), Gaps = 3/600 (0%)
Query: 8 TFQQLHSLLTKKSNP---RFRDTHLDFLCGNGRLNEAITVLDSIATQGAKVRRNTYINLL 64
T + TK S P + D+HL++LC GRLNEA++ L+ IA G+KV T+I+LL
Sbjct: 22 TLSAFSTKPTKSSVPFTKKITDSHLNYLCKKGRLNEAVSALELIAQHGSKVSPKTFISLL 81
Query: 65 QACIDSNSIHLARKLHAFLNLVTEIDVFVKTKLLSVYAKCGCLDDAREVFEDMRERNLYT 124
Q+CID NS+ L RK+HA +LV E + F++TKL+S+YAKCG L DAR++F +MRE+NLYT
Sbjct: 82 QSCIDCNSVTLGRKVHAHFHLVQEKNPFLETKLVSMYAKCGSLSDARKLFGEMREKNLYT 141
Query: 125 WSAMIGAYSRDQRWREVVELFFLMVQDGLFPDDFLFPKILQACGNCGDFEAGKLMHSLVI 184
WSAMIGA+SR+ RW+EVVELF++M+++ PD FL PKILQACGN D ++G+++HSL I
Sbjct: 142 WSAMIGAFSREHRWKEVVELFYMMMEENCLPDAFLLPKILQACGNSRDIKSGEMVHSLAI 201
Query: 185 KLGMSCVRRVRNSVLAVYVKCGKLIWARRFFESMDEKDGVAWNSMISGYFQIGENDEAHR 244
K G+ V NS+LAVY KCGKL A + FE MD+ + AWN++ISGY Q G+ +EA R
Sbjct: 202 KCGVDGYPFVNNSILAVYAKCGKLSLASKCFEMMDKSETAAWNALISGYCQHGQIEEAQR 261
Query: 245 LFDKMCREEIKLGVVTFNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFA 304
LFD M E I+ G+V++NILI YNQLG D+AME++K+ME LG +PDV TWT MISG A
Sbjct: 262 LFDAMREEGIEPGLVSWNILIAGYNQLGYFDIAMELMKKMEVLGTSPDVVTWTSMISGLA 321
Query: 305 QNGRTSQALDLFKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLAVKMGFTDDVL 364
QN + S+AL LF +M V PNGVTI+SA+SAC LK L G+EIH+LAVK+GF +DVL
Sbjct: 322 QNDKASKALHLFNDMILARVEPNGVTISSAVSACASLKVLNEGLEIHALAVKLGFVEDVL 381
Query: 365 VGNSLINMYSKCEELEAAERVFDMIKDKDVYSWNSMIAGYCQAGYCGKAYELFIKMQESD 424
VGNSLI+MYSKC +LE A +VFDM+ +KDVY+WNSMI GYCQ GYCGKA+ LF+KMQ+S+
Sbjct: 382 VGNSLIDMYSKCGKLENAWKVFDMMPEKDVYTWNSMIGGYCQVGYCGKAHMLFMKMQKSE 441
Query: 425 VPPNVITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNA 484
PN ITWN +I GYI NG+ED+A+DLF+RM ++ K+KR+TASWNSLI+GY Q+GQK+ A
Sbjct: 442 TQPNAITWNNMIWGYIHNGDEDQAMDLFRRMEEDGKIKRDTASWNSLISGYLQIGQKDKA 501
Query: 485 LGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDT 544
L +FR+MQS N VTILSVLPACA L+A VKEIHGCV+RR+L+S LP+ NSLIDT
Sbjct: 502 LSIFRQMQSFSININSVTILSVLPACANLIALKMVKEIHGCVIRRNLDSLLPITNSLIDT 561
Query: 545 YAKSGNIVYSRTIFDGMSSKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTF 604
YAKSGNI YSRTIFD KD ITWNSLI GYVL G AAL L DQMK G+KPNR TF
Sbjct: 562 YAKSGNIGYSRTIFDRALFKDFITWNSLIAGYVLFGCSDAALGLVDQMKKLGIKPNRSTF 621
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242077973|ref|XP_002443755.1| hypothetical protein SORBIDRAFT_07g001380 [Sorghum bicolor] gi|241940105|gb|EES13250.1| hypothetical protein SORBIDRAFT_07g001380 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 706 bits (1821), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/792 (47%), Positives = 519/792 (65%), Gaps = 22/792 (2%)
Query: 87 TEIDVFVKTKLLSVYAKCGCLDDAREVFEDMRERNLYTWSAMIGAYSRDQRWREVVELFF 146
+E + +TKL+++++ G L DAR+VFE M R+L WSAMIGAY+ +++VV L
Sbjct: 92 SEPLIVTETKLITMHSCAGRLGDARKVFEGMACRDLLAWSAMIGAYAIRGLYKDVVSLAV 151
Query: 147 LMVQDGLFPDDFLFPKILQACGNCGDFEAGKLMHSLVIKLG-MSCVRR---VRNSVLAVY 202
MV++G+ PD FL +ILQAC D E G MHSL I+ G M+ R V NSVLA+Y
Sbjct: 152 TMVREGVTPDRFLITRILQACAYTEDLELGVAMHSLAIRSGFMAETARDVPVGNSVLAMY 211
Query: 203 VKCGKLIWARRFFESMDEKDGVAWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTFN 262
VKC +L AR FE M ++D WNSMI G Q E +EA L D M RE GVVT+N
Sbjct: 212 VKCRELGRARVVFEKMGQRDLGTWNSMIFGCCQSNEWEEARMLLDDMRREGTLPGVVTWN 271
Query: 263 ILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFV 322
LI SY + G+ DVAMEM+++ME G+ PDV TWT ++SGF + R+ +AL F M
Sbjct: 272 TLISSYARSGELDVAMEMLEQMEESGVAPDVVTWTSLVSGFVHSDRSGEALRCFMRMRLA 331
Query: 323 GVMPNGVTITSAISACTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEELEAA 382
GV PNG+TI SAISAC L+ L+ GME+H A+K+G ++VL GNSL++MY+KC E+ AA
Sbjct: 332 GVEPNGMTIASAISACASLRLLSQGMELHCHAIKVGSVNNVLSGNSLVDMYAKCGEIVAA 391
Query: 383 ERVFDMIKDKDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNVLISGYIQN 442
+R+F+ I +KD++SWNSM+AGY QAGYCGKAYELF KM+ V NVITWN++ISGYI+N
Sbjct: 392 KRIFNEIPEKDIFSWNSMVAGYAQAGYCGKAYELFCKMESLGVRRNVITWNIMISGYIRN 451
Query: 443 GNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVT 502
G+++ A +LFQ M ++ VKR+TASWN+LIAG G + AL +FR+MQS P+ +T
Sbjct: 452 GDDERAFELFQMM-ESYGVKRDTASWNALIAGSVHNGHSDRALRIFRQMQSLLVRPDYIT 510
Query: 503 ILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMS 562
ILS++PA A LVA +KV+EIH C+ +LE + N+LI+ Y+KSG++ + +FD S
Sbjct: 511 ILSIIPAFANLVAFSKVREIHACIFHNNLEMDGKIANALINAYSKSGDLAGACAVFDRHS 570
Query: 563 SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKK 622
S++II+WN +I ++LHG ALD F +MK G++P+ T ++I A+ L G V K+
Sbjct: 571 SRNIISWNCIILAHLLHGSPCEALDRFCEMKQEGVRPDHTTLTAVIKAYGLQGKVSEAKQ 630
Query: 623 VFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPIEPDSSIWEALLTACRIH 682
+F ++T Y I P ++HY+A++DL GRSG L+EA EFI++MP+ P+ ++WEALLTA IH
Sbjct: 631 IFYNMTHDYNIHPDLDHYAAIVDLLGRSGSLQEAYEFIDNMPLIPNLAVWEALLTAASIH 690
Query: 683 GNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLERENTRRNSFGQCW 742
GN LA LA L L+P D IQRL+ + + GK D + + + + C
Sbjct: 691 GNARLANLAARELSLLDPSDPRIQRLVFNYWDLTGKSAD-VPLMTVYNKGRELEDVDSCS 749
Query: 743 IEVKNLVYTFVTGGWSESYSDLLYSWLQNVPEN---VTARSSHSGLC---IEEEEKEEIS 796
+E+KN VY F T SD L L+N + + S LC EEEKEE+S
Sbjct: 750 VEIKNKVYLFST-------SDNLA--LENTIAELKLIMIQIRMSLLCNGTDAEEEKEELS 800
Query: 797 GIHSEKLALAFALIGSSQAPHTIRIVKNIRMCVHCHETAKYVSMMHHCEIFLADSKCLHH 856
GIH EKLA+AFA + +S IRI+K +RMC CH AK VS + +I + DS CLH
Sbjct: 801 GIHCEKLAIAFA-VSNSPPFRNIRIIKTLRMCSLCHVFAKLVSEKYERQILIKDSNCLHK 859
Query: 857 FKNGQCSCGDYW 868
FKNG+CSC DYW
Sbjct: 860 FKNGKCSCEDYW 871
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357147690|ref|XP_003574443.1| PREDICTED: pentatricopeptide repeat-containing protein At1g19720-like [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 686 bits (1769), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/840 (43%), Positives = 526/840 (62%), Gaps = 14/840 (1%)
Query: 35 NGRLNEAITVLDSIATQGAKVRRNTYINLLQACIDSNSIHLARKLHAFLNLVTEIDVFV- 93
+GRL E I L ++ +++ + + + H ++ +E FV
Sbjct: 28 HGRLQEPIMALAQAPPLPLSLQEARSVHVPH---RARPVEEPARAHPSSSIASEEPRFVS 84
Query: 94 KTKLLSVYAKCGCLDDAREVFEDMRERNLYTWSAMIGAYSRDQRWREVVELFFLMVQDGL 153
+TKL++ ++ G LDDAR+VF+ M ++L WS+MIGAY+ + EV+ L MV +G+
Sbjct: 85 ETKLIAFHSSAGRLDDARKVFDGMSHKDLLAWSSMIGAYATRGMFDEVLVLAVKMVSEGV 144
Query: 154 FPDDFLFPKILQACGNCGDFEAGKLMHSLVIKLGMSCVRR---VRNSVLAVYVKCGKLIW 210
PD FL +ILQAC D E G ++HS+ I+ G + V NSVL +YVKCG+L +
Sbjct: 145 LPDRFLITRILQACAYAEDLELGTVLHSMAIRRGFMGREKDVPVSNSVLVMYVKCGELGF 204
Query: 211 ARRFFESMDEKDGVAWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQ 270
AR FE M +D WNSMI G + + +EA RL D M +E I+ GVVT+N LI SY +
Sbjct: 205 ARVVFEKMGRRDLGTWNSMIFGCCRSCKWEEARRLLDDMRKEGIEPGVVTWNTLISSYAR 264
Query: 271 LGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVT 330
G +VA+E++++ME G+ PDV TWT ++SGF + R +AL F M GV PNG+T
Sbjct: 265 SGDLNVAVELLEQMEESGVEPDVVTWTSLVSGFVHSDRGVEALQCFIRMRLAGVEPNGMT 324
Query: 331 ITSAISACTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEELEAAERVFDMIK 390
I AISAC LK L G +H A+K+G +VL GNSL++MY+KC E AA R+F+ I
Sbjct: 325 IACAISACASLKLLNQGSMLHCHAIKVGSVKNVLSGNSLVDMYAKCGETVAASRIFNQIP 384
Query: 391 DKDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNVLISGYIQNGNEDEAVD 450
+KD++SWNSM+AGY QAGYCGKAYELF KM+ + N ITWN +ISGYI+NG+++ A +
Sbjct: 385 EKDIFSWNSMVAGYAQAGYCGKAYELFCKMENYGIRRNAITWNTMISGYIRNGDDERAFE 444
Query: 451 LFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPAC 510
LFQ M ++ VKR+TASWN LIAG G + AL +FR+MQ+ P+ +T+LS++PA
Sbjct: 445 LFQTM-ESYGVKRDTASWNILIAGSVHNGYFDRALRIFRQMQAVLIKPDYITVLSIIPAF 503
Query: 511 AYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMSSKDIITWN 570
A LVA+ KV+EIH C+ +LE + N+LI+ Y+KSG++ + +FD SS++II+WN
Sbjct: 504 ANLVAAWKVREIHACIFHHNLEIDGKIANALINAYSKSGDLAGACAVFDRHSSRNIISWN 563
Query: 571 SLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITEC 630
+I ++LHG L+ F +MK G+ P+ T ++I A+ + MV G+++F ++ +
Sbjct: 564 CIIVAHLLHGSPTEVLNHFYKMKQQGVLPDHTTLTAVIKAYGMEAMVSEGREIFLNMEKN 623
Query: 631 YQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPIEPDSSIWEALLTACRIHGNIDLAVL 690
Y + P ++HY+AM+DL GRSG+L+EA E I++MP+ P+ ++WEALLT+ +HGN+ LA L
Sbjct: 624 YNVTPDLDHYTAMVDLLGRSGRLQEAYELIDEMPLTPNLTVWEALLTSAIMHGNVRLAHL 683
Query: 691 AIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLERENTRR--NSFGQCWIEVKNL 748
A + D+EP D+ IQ ++ + + GK D V KL N R + C E+KN+
Sbjct: 684 AATEMSDIEPSDLRIQMVVSGLQDLAGKSFD---VPKLTVHNKGRMLDGIECCSTEIKNI 740
Query: 749 VYTFVTGGWSESYSDLLYSWLQNVPENVTARSSHSGLCIEEEEKEEISGIHSEKLALAFA 808
VY F TG S + L + ++ SG EEEKEE++GIH EKLA+A
Sbjct: 741 VYLFSTGDNVASEHIVAELELIMMQIGLSMLDISSGTLDVEEEKEEVAGIHCEKLAIALG 800
Query: 809 LIGSSQAPHTIRIVKNIRMCVHCHETAKYVSMMHHCEIFLADSKCLHHFKNGQCSCGDYW 868
+ S Q +IRI+K RMC HCH AK VS + +I + D KCLH F+NG+CSC DYW
Sbjct: 801 ISNSPQF-RSIRIIKTTRMCNHCHTFAKLVSEKYGRQILIKDPKCLHKFENGKCSCEDYW 859
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 868 | ||||||
| TAIR|locus:2013079 | 894 | AT1G19720 "AT1G19720" [Arabido | 0.981 | 0.953 | 0.590 | 4.4e-274 | |
| TAIR|locus:505006130 | 970 | AT1G18485 [Arabidopsis thalian | 0.493 | 0.441 | 0.347 | 2.6e-95 | |
| TAIR|locus:2140235 | 781 | AT4G02750 [Arabidopsis thalian | 0.752 | 0.836 | 0.322 | 1.1e-92 | |
| TAIR|locus:2012295 | 705 | AT1G09410 [Arabidopsis thalian | 0.741 | 0.913 | 0.326 | 6.5e-90 | |
| TAIR|locus:2148101 | 850 | AT5G16860 "AT5G16860" [Arabido | 0.868 | 0.887 | 0.297 | 6e-87 | |
| TAIR|locus:2027554 | 704 | AT1G56690 [Arabidopsis thalian | 0.745 | 0.919 | 0.311 | 2.4e-85 | |
| TAIR|locus:2202074 | 809 | CRR22 "CHLORORESPIRATORY REDUC | 0.725 | 0.778 | 0.328 | 1.7e-84 | |
| TAIR|locus:2019160 | 643 | AT1G74630 [Arabidopsis thalian | 0.650 | 0.878 | 0.331 | 2.4e-83 | |
| TAIR|locus:2124137 | 871 | DOT4 "DEFECTIVELY ORGANIZED TR | 0.907 | 0.904 | 0.301 | 6.6e-81 | |
| TAIR|locus:2060640 | 738 | OTP81 "ORGANELLE TRANSCRIPT PR | 0.754 | 0.887 | 0.297 | 1.8e-80 |
| TAIR|locus:2013079 AT1G19720 "AT1G19720" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2635 (932.6 bits), Expect = 4.4e-274, P = 4.4e-274
Identities = 505/855 (59%), Positives = 639/855 (74%)
Query: 17 TKKSNPRF-RDTHLDFLCGNGRLNEAITVLDSIATQGAKVRRNTYINLLQACIDSNSIHL 75
TKK P D D+LC NG L EA LDS+ QG+KV+R+TY+ LL++CIDS SIHL
Sbjct: 40 TKKKEPNIIPDEQFDYLCRNGSLLEAEKALDSLFQQGSKVKRSTYLKLLESCIDSGSIHL 99
Query: 76 ARKLHAFLNLVTEIDVFVKTKLLSVYAKCGCLDDAREVFEDMRERNLYTWSAMIGAYSRD 135
R LHA L TE DVFV+TKLLS+YAKCGC+ DAR+VF+ MRERNL+TWSAMIGAYSR+
Sbjct: 100 GRILHARFGLFTEPDVFVETKLLSMYAKCGCIADARKVFDSMRERNLFTWSAMIGAYSRE 159
Query: 136 QRWREVVELFFLMVQDGLFPDDFLFPKILQACGNCGDFEAGKLMHSLVIKLGMSCVRRVR 195
RWREV +LF LM++DG+ PDDFLFPKILQ C NCGD EAGK++HS+VIKLGMS RV
Sbjct: 160 NRWREVAKLFRLMMKDGVLPDDFLFPKILQGCANCGDVEAGKVIHSVVIKLGMSSCLRVS 219
Query: 196 NSVLAVYVKCGKLIWARRFFESMDEKDGVAWNSMISGYFQIGENDEAHRLFDKMCREEIK 255
NS+LAVY KCG+L +A +FF M E+D +AWNS++ Y Q G+++EA L +M +E I
Sbjct: 220 NSILAVYAKCGELDFATKFFRRMRERDVIAWNSVLLAYCQNGKHEEAVELVKEMEKEGIS 279
Query: 256 LGVVTFNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDL 315
G+VT+NILI YNQLG+CD AM+++++ME+ GIT DVFTWT MISG NG QALD+
Sbjct: 280 PGLVTWNILIGGYNQLGKCDAAMDLMQKMETFGITADVFTWTAMISGLIHNGMRYQALDM 339
Query: 316 FKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSK 375
F++M GV+PN VTI SA+SAC+ LK + G E+HS+AVKMGF DDVLVGNSL++MYSK
Sbjct: 340 FRKMFLAGVVPNAVTIMSAVSACSCLKVINQGSEVHSIAVKMGFIDDVLVGNSLVDMYSK 399
Query: 376 CEELEAAERVFDMIKDKDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNVL 435
C +LE A +VFD +K+KDVY+WNSMI GYCQAGYCGKAYELF +MQ++++ PN+ITWN +
Sbjct: 400 CGKLEDARKVFDSVKNKDVYTWNSMITGYCQAGYCGKAYELFTRMQDANLRPNIITWNTM 459
Query: 436 ISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSC 495
ISGYI+NG+E EA+DLFQRM K+ KV+RNTA+WN +IAGY Q G+K+ AL +FRKMQ S
Sbjct: 460 ISGYIKNGDEGEAMDLFQRMEKDGKVQRNTATWNLIIAGYIQNGKKDEALELFRKMQFSR 519
Query: 496 FYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSR 555
F PN VTILS+LPACA L+ + V+EIHGCVLRR+L++ V N+L DTYAKSG+I YSR
Sbjct: 520 FMPNSVTILSLLPACANLLGAKMVREIHGCVLRRNLDAIHAVKNALTDTYAKSGDIEYSR 579
Query: 556 TIFDGMSSKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAG 615
TIF GM +KDIITWNSLI GYVLHG + AL LF+QMK+ G+ PNRGT SIILAH L G
Sbjct: 580 TIFLGMETKDIITWNSLIGGYVLHGSYGPALALFNQMKTQGITPNRGTLSSIILAHGLMG 639
Query: 616 MVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPIEPDSSIWEAL 675
VD GKKVF SI Y IIP +EH SAM+ LYGR+ +LEEA++FI++M I+ ++ IWE+
Sbjct: 640 NVDEGKKVFYSIANDYHIIPALEHCSAMVYLYGRANRLEEALQFIQEMNIQSETPIWESF 699
Query: 676 LTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLERENTRR 735
LT CRIHG+ID+A+ A E LF LEP + + ++ QIYA+ K +L+ K R+N +
Sbjct: 700 LTGCRIHGDIDMAIHAAENLFSLEPENTATESIVSQIYALGAKLGRSLEGNKPRRDNLLK 759
Query: 736 NSFGQCWIEVKNLVYTFVTGGWSESYSDLLYSWLQNVPENVTARSSHSG-LCXXXXXXXX 794
GQ WIEV+NL++TF TG S+ +D+LY ++ + ++G L
Sbjct: 760 KPLGQSWIEVRNLIHTFTTGDQSKLCTDVLYPLVEKMSRLDNRSDQYNGELWIEEEGREE 819
Query: 795 XXXXXXXXLALAFALIGSSQAPHT-IRIVKNIRMCVHCHETAKYVSMMHHCEIFLADSKC 853
A+AF LI SS A T IRI+KN+RMC CH+TAKYVS + C+I L D++C
Sbjct: 820 TCGIHSEKFAMAFGLISSSGASKTTIRILKNLRMCRDCHDTAKYVSKRYGCDILLEDTRC 879
Query: 854 LHHFKNGQCSCGDYW 868
LHHFKNG CSC DYW
Sbjct: 880 LHHFKNGDCSCKDYW 894
|
|
| TAIR|locus:505006130 AT1G18485 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 667 (239.9 bits), Expect = 2.6e-95, Sum P(2) = 2.6e-95
Identities = 153/440 (34%), Positives = 240/440 (54%)
Query: 435 LISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSS 494
++S YI G LF M DK + SWN++I GY Q G + ALGVFR+M
Sbjct: 537 VLSLYIHCGELCTVQALFDAM--EDK---SLVSWNTVITGYLQNGFPDRALGVFRQMVLY 591
Query: 495 CFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYS 554
++++ V AC+ L + +E H L+ LE + SLID YAK+G+I S
Sbjct: 592 GIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQS 651
Query: 555 RTIFDGMSSKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLA 614
+F+G+ K +WN++I GY +HG A+ LF++M+ G P+ TFL ++ A + +
Sbjct: 652 SKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHS 711
Query: 615 GMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFI-EDMPIEPDSSIWE 673
G++ G + + + + P ++HY+ +ID+ GR+G+L++A+ + E+M E D IW+
Sbjct: 712 GLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWK 771
Query: 674 ALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLERENT 733
+LL++CRIH N+++ +LF+LEP L+ +YA GK ED KVR+ E +
Sbjct: 772 SLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMS 831
Query: 734 RRNSFGQCWIEVKNLVYTFVTGG-WSESYSDL--LYSWLQNVPENVTARSSHSGLCXXXX 790
R G WIE+ V++FV G + + + ++ L+S L+ + R +
Sbjct: 832 LRKDAGCSWIELNRKVFSFVVGERFLDGFEEIKSLWSILEMKISKMGYRPDTMSVQHDLS 891
Query: 791 XXXXXXXXXXXX--LALAFALIGSSQAPHTIRIVKNIRMCVHCHETAKYVSMMHHCEIFL 848
LAL + LI +S+ TIR+ KN+R+CV CH AK +S + EI +
Sbjct: 892 EEEKIEQLRGHSEKLALTYGLIKTSEGT-TIRVYKNLRICVDCHNAAKLISKVMEREIVV 950
Query: 849 ADSKCLHHFKNGQCSCGDYW 868
D+K HHFKNG CSCGDYW
Sbjct: 951 RDNKRFHHFKNGVCSCGDYW 970
|
|
| TAIR|locus:2140235 AT4G02750 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 923 (330.0 bits), Expect = 1.1e-92, P = 1.1e-92
Identities = 227/703 (32%), Positives = 362/703 (51%)
Query: 196 NSVLAVYVKCGKLIWARRFFESMDEKDGVAWNSMISGYFQIGENDEAHRLFDKMCREEIK 255
N +++ Y++ G+ AR+ F+ M E+D V+WN MI GY + +A LF+ M +
Sbjct: 99 NGMISGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERD-- 156
Query: 256 LGVVTFNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDL 315
V ++N ++ Y Q G D A + RM DV +W ++S + QN + +A L
Sbjct: 157 --VCSWNTMLSGYAQNGCVDDARSVFDRMPEKN---DV-SWNALLSAYVQNSKMEEACML 210
Query: 316 FKEMS-------------FVGVMP--------NGVTITSAISACTDLKALAMGMEIHSLA 354
FK FV + + + +S T + A +I
Sbjct: 211 FKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEAR 270
Query: 355 VKMGFT--DDVLVGNSLINMYSKCEELEAAERVFDMIKDKDVYSWNSMIAGYCQAGYCGK 412
+ DV ++++ Y + +E A +FD + +++ SWN+M+AGY Q
Sbjct: 271 QLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEM 330
Query: 413 AYELFIKMQESDVPP--NVITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNS 470
A ELF DV P NV TWN +I+GY Q G EA +LF +M K D V SW +
Sbjct: 331 AKELF------DVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPV-----SWAA 379
Query: 471 LIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRS 530
+IAGY Q G AL +F +M+ N + S L CA +VA K++HG +++
Sbjct: 380 MIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGG 439
Query: 531 LESSLPVMNSLIDTYAKSGNIVYSRTIFDGMSSKDIITWNSLICGYVLHGFWHAALDLFD 590
E+ V N+L+ Y K G+I + +F M+ KDI++WN++I GY HGF AL F+
Sbjct: 440 YETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFE 499
Query: 591 QMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRS 650
MK GLKP+ T ++++ A S G+VD G++ F ++T+ Y ++P +HY+ M+DL GR+
Sbjct: 500 SMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRA 559
Query: 651 GKLEEAMEFIEDMPIEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLIL 710
G LE+A +++MP EPD++IW LL A R+HGN +LA A +++F +EP + + L+
Sbjct: 560 GLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLS 619
Query: 711 QIYAICGKPEDALKVRKLERENTRRNSFGQCWIEVKNLVYTFVTGGWSESYSDLLYSWLQ 770
+YA G+ D K+R R+ + G WIE++N +TF G D ++++L+
Sbjct: 620 NLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLE 679
Query: 771 NVPENVTARS--SHSGLCXXXXXXXXXXXXX---XXXLALAFALIGSSQAPHTIRIVKNI 825
+ + S + + LA+A+ ++ S IR++KN+
Sbjct: 680 ELDLRMKKAGYVSKTSVVLHDVEEEEKERMVRYHSERLAVAYGIMRVSSG-RPIRVIKNL 738
Query: 826 RMCVHCHETAKYVSMMHHCEIFLADSKCLHHFKNGQCSCGDYW 868
R+C CH KY++ + I L D+ HHFK+G CSCGDYW
Sbjct: 739 RVCEDCHNAIKYMARITGRLIILRDNNRFHHFKDGSCSCGDYW 781
|
|
| TAIR|locus:2012295 AT1G09410 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 897 (320.8 bits), Expect = 6.5e-90, P = 6.5e-90
Identities = 228/698 (32%), Positives = 357/698 (51%)
Query: 204 KCGKLIWARRFFESMDEKDGVAWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTFNI 263
+ GK+ AR+ F+S D K +WNSM++GYF +A +LFD+M I +++N
Sbjct: 29 RIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEMPDRNI----ISWNG 84
Query: 264 LIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMS--- 320
L+ Y + G+ D A ++ M +V +WT ++ G+ NG+ A LF +M
Sbjct: 85 LVSGYMKNGEIDEARKVFDLMPER----NVVSWTALVKGYVHNGKVDVAESLFWKMPEKN 140
Query: 321 -------FVGVMPNGVTITSAISA---CTDLKALAMGMEIHSLAVKMGFTDD-------- 362
+G + +G I A D +A IH L K G D+
Sbjct: 141 KVSWTVMLIGFLQDG-RIDDACKLYEMIPDKDNIARTSMIHGLC-KEGRVDEAREIFDEM 198
Query: 363 ----VLVGNSLINMYSKCEELEAAERVFDMIKDKDVYSWNSMIAGYCQAGYCGKAYELFI 418
V+ +++ Y + ++ A ++FD++ +K SW SM+ GY Q G A ELF
Sbjct: 199 SERSVITWTTMVTGYGQNNRVDDARKIFDVMPEKTEVSWTSMLMGYVQNGRIEDAEELFE 258
Query: 419 KMQESDVPPNVITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQL 478
M V P VI N +ISG Q G +A +F M + RN ASW ++I +++
Sbjct: 259 VMP---VKP-VIACNAMISGLGQKGEIAKARRVFDSMKE-----RNDASWQTVIKIHERN 309
Query: 479 GQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVM 538
G + AL +F MQ P T++S+L CA L + + K++H ++R + + V
Sbjct: 310 GFELEALDLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVA 369
Query: 539 NSLIDTYAKSGNIVYSRTIFDGMSSKDIITWNSLICGYVLHGFWHAALDLFDQMKSFG-L 597
+ L+ Y K G +V S+ IFD SKDII WNS+I GY HG AL +F +M G
Sbjct: 370 SVLMTMYIKCGELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGST 429
Query: 598 KPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAM 657
KPN TF++ + A S AGMV+ G K++ S+ + + P+ HY+ M+D+ GR+G+ EAM
Sbjct: 430 KPNEVTFVATLSACSYAGMVEEGLKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEAM 489
Query: 658 EFIEDMPIEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICG 717
E I+ M +EPD+++W +LL ACR H +D+A ++L ++EP + L+ +YA G
Sbjct: 490 EMIDSMTVEPDAAVWGSLLGACRTHSQLDVAEFCAKKLIEIEPENSGTYILLSNMYASQG 549
Query: 718 KPEDALKVRKLERENTRRNSFGQCWIEVKNLVYTFVTGGW-SESYSDLLYSWLQNVPENV 776
+ D ++RKL + R S G W EV+N V+ F GG S + + L + + +
Sbjct: 550 RWADVAELRKLMKTRLVRKSPGCSWTEVENKVHAFTRGGINSHPEQESILKILDEL-DGL 608
Query: 777 TARSSHSGLCXXXXXXXX------XXXXXXXXLALAFALIGSSQAPHTIRIVKNIRMCVH 830
+ ++ C LA+A+AL+ S+ IR++KN+R+C
Sbjct: 609 LREAGYNPDCSYALHDVDEEEKVNSLKYHSERLAVAYALLKLSEGI-PIRVMKNLRVCSD 667
Query: 831 CHETAKYVSMMHHCEIFLADSKCLHHFKNGQCSCGDYW 868
CH K +S + EI L D+ HHF+NG+CSC DYW
Sbjct: 668 CHTAIKIISKVKEREIILRDANRFHHFRNGECSCKDYW 705
|
|
| TAIR|locus:2148101 AT5G16860 "AT5G16860" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 869 (311.0 bits), Expect = 6.0e-87, P = 6.0e-87
Identities = 239/804 (29%), Positives = 384/804 (47%)
Query: 97 LLSVYAKCGCLDDAREVFEDM--RERNLYTWSAMIGAYSRDQRWREVVELFFLMVQDGLF 154
L+S Y GCL A + + +Y W+++I +Y + + + LF LM
Sbjct: 65 LISTYISVGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGDNGCANKCLYLFGLMHSLSWT 124
Query: 155 PDDFLFPKILQACGNCGDFEAGKLMHSLVIKLGMSCVRRVRNSVLAVYVKCGKLIWARRF 214
PD++ FP + +ACG G+ H+L + G V N+++A+Y +C L AR+
Sbjct: 125 PDNYTFPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKV 184
Query: 215 FESMDEKDGVAWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQLGQC 274
F+ M D V+WNS+I Y ++G+ A +F +M E G NI + N L C
Sbjct: 185 FDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNE---FGCRPDNITL--VNVLPPC 239
Query: 275 DV--AMEMVKRMESLGITPDV----FTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNG 328
+ K++ +T ++ F C++ +A+ G +A +F MS V+
Sbjct: 240 ASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWN 299
Query: 329 VTIT--SAISACTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSK----CEELEAA 382
+ S I D A+ + ++ +KM DV+ ++ I+ Y++ E L
Sbjct: 300 AMVAGYSQIGRFED--AVRLFEKMQEEKIKM----DVVTWSAAISGYAQRGLGYEALGVC 353
Query: 383 ERVFDM-IKDKDVYSWNSMIAGYCQAGYC--GKAYELFIKMQESDVPPNV-----ITWNV 434
++ IK +V + S+++G G GK + D+ N + N
Sbjct: 354 RQMLSSGIKPNEV-TLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQ 412
Query: 435 LISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKM-QS 493
LI Y + D A +F + + R+ +W +I GY Q G N AL + +M +
Sbjct: 413 LIDMYAKCKKVDTARAMFDSLSPKE---RDVVTWTVMIGGYSQHGDANKALELLSEMFEE 469
Query: 494 SC-FYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLP--VMNSLIDTYAKSGN 550
C PN TI L ACA L A K+IH LR ++++P V N LID YAK G+
Sbjct: 470 DCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQ-QNAVPLFVSNCLIDMYAKCGS 528
Query: 551 IVYSRTIFDGMSSKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILA 610
I +R +FD M +K+ +TW SL+ GY +HG+ AL +FD+M+ G K + T L ++ A
Sbjct: 529 ISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYA 588
Query: 611 HSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPIEPDSS 670
S +GM+D G + F + + + P EHY+ ++DL GR+G+L A+ IE+MP+EP
Sbjct: 589 CSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPV 648
Query: 671 IWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLER 730
+W A L+ CRIHG ++L A E++ +L L+ +YA G+ +D ++R L R
Sbjct: 649 VWVAFLSCCRIHGKVELGEYAAEKITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMR 708
Query: 731 ENTRRNSFGQCWIE-VKNLVYTFVTGGWSESYSDLLYSWLQNVPENVT--ARSSHSGLCX 787
+ G W+E +K TF G + ++ +Y L + + + +G
Sbjct: 709 HKGVKKRPGCSWVEGIKGTT-TFFVGDKTHPHAKEIYQVLLDHMQRIKDIGYVPETGFAL 767
Query: 788 XXXXXXXXXXXX---XXXLALAFALIGSSQAPHTIRIVKNIRMCVHCHETAKYVSMMHHC 844
LALA+ ++ + Q IRI KN+R+C CH Y+S +
Sbjct: 768 HDVDDEEKDDLLFEHSEKLALAYGILTTPQGA-AIRITKNLRVCGDCHTAFTYMSRIIDH 826
Query: 845 EIFLADSKCLHHFKNGQCSCGDYW 868
+I L DS HHFKNG CSC YW
Sbjct: 827 DIILRDSSRFHHFKNGSCSCKGYW 850
|
|
| TAIR|locus:2027554 AT1G56690 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 854 (305.7 bits), Expect = 2.4e-85, P = 2.4e-85
Identities = 216/694 (31%), Positives = 348/694 (50%)
Query: 204 KCGKLIWARRFFESMDEKDGVAWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTFNI 263
+ GK+ AR+FF+S+ K +WNS++SGYF G EA +LFD+M VV++N
Sbjct: 29 RIGKINEARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQLFDEMSERN----VVSWNG 84
Query: 264 LIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLF------K 317
L+ Y + A + + M +V +WT M+ G+ Q G +A LF
Sbjct: 85 LVSGYIKNRMIVEARNVFELMPER----NVVSWTAMVKGYMQEGMVGEAESLFWRMPERN 140
Query: 318 EMS----FVGVMPNG-VTITSAISACTDLKALAMGMEIHSLAVKMGFTDD---------- 362
E+S F G++ +G + + +K + + + G D+
Sbjct: 141 EVSWTVMFGGLIDDGRIDKARKLYDMMPVKDVVASTNMIGGLCREGRVDEARLIFDEMRE 200
Query: 363 --VLVGNSLINMYSKCEELEAAERVFDMIKDKDVYSWNSMIAGYCQAGYCGKAYELFIKM 420
V+ ++I Y + ++ A ++F+++ +K SW SM+ GY +G A E F M
Sbjct: 201 RNVVTWTTMITGYRQNNRVDVARKLFEVMPEKTEVSWTSMLLGYTLSGRIEDAEEFFEVM 260
Query: 421 QESDVPPNVITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQ 480
+ P VI N +I G+ + G +A +F M D R+ A+W +I Y++ G
Sbjct: 261 P---MKP-VIACNAMIVGFGEVGEISKARRVFDLM--ED---RDNATWRGMIKAYERKGF 311
Query: 481 KNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNS 540
+ AL +F +MQ P+ +++S+L CA L + +++H ++R + + V +
Sbjct: 312 ELEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQFDDDVYVASV 371
Query: 541 LIDTYAKSGNIVYSRTIFDGMSSKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPN 600
L+ Y K G +V ++ +FD SSKDII WNS+I GY HG AL +F +M S G PN
Sbjct: 372 LMTMYVKCGELVKAKLVFDRFSSKDIIMWNSIISGYASHGLGEEALKIFHEMPSSGTMPN 431
Query: 601 RGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFI 660
+ T ++I+ A S AG ++ G ++F S+ + + P +EHYS +D+ GR+G++++AME I
Sbjct: 432 KVTLIAILTACSYAGKLEEGLEIFESMESKFCVTPTVEHYSCTVDMLGRAGQVDKAMELI 491
Query: 661 EDMPIEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPE 720
E M I+PD+++W ALL AC+ H +DLA +A ++LF+ EP + L+ I A K
Sbjct: 492 ESMTIKPDATVWGALLGACKTHSRLDLAEVAAKKLFENEPDNAGTYVLLSSINASRSKWG 551
Query: 721 DALKVRKLERENTRRNSFGQCWIEVKNLVYTFVTGGWSESYSDLLYSWLQNVPENVTARS 780
D VRK R N G WIEV V+ F GG + + + + +
Sbjct: 552 DVAVVRKNMRTNNVSKFPGCSWIEVGKKVHMFTRGGIKNHPEQAMILMMLEKTDGLLREA 611
Query: 781 SHSGLCXXXXXXXX------XXXXXXXXLALAFALIGSSQAPHTIRIVKNIRMCVHCHET 834
+S C LA+A+ L+ + IR++KN+R+C CH
Sbjct: 612 GYSPDCSHVLHDVDEEEKVDSLSRHSERLAVAYGLLKLPEGV-PIRVMKNLRVCGDCHAA 670
Query: 835 AKYVSMMHHCEIFLADSKCLHHFKNGQCSCGDYW 868
K +S + EI L D+ HHF NG+CSC DYW
Sbjct: 671 IKLISKVTEREIILRDANRFHHFNNGECSCRDYW 704
|
|
| TAIR|locus:2202074 CRR22 "CHLORORESPIRATORY REDUCTION22" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 846 (302.9 bits), Expect = 1.7e-84, P = 1.7e-84
Identities = 216/658 (32%), Positives = 346/658 (52%)
Query: 222 DGVAWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQLGQCDVAMEMV 281
D A + + Y + + +EA ++FD+M ++ V++N ++ Y+Q G +A+EMV
Sbjct: 169 DLFAMTGLENMYAKCRQVNEARKVFDRMPERDL----VSWNTIVAGYSQNGMARMALEMV 224
Query: 282 KRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISACTDL 341
K M + P T ++ + + + + KE+ + ++ + +A D+
Sbjct: 225 KSMCEENLKPSFITIVSVLPAVS----ALRLISVGKEIHGYAMRSGFDSLVNISTALVDM 280
Query: 342 KALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEELEAAERVFDMIKDKDVYSWNSMI 401
A +E +V+ NS+I+ Y + E + A +F + D+ V + +
Sbjct: 281 YAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSV 340
Query: 402 AGYCQAGYCGKAYEL----FI-KMQ-ESDVPPNVITWNVLISGYIQNGNEDEAVDLFQRM 455
G A C +L FI K+ E + NV N LIS Y + D A +F
Sbjct: 341 MGALHA--CADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMF--- 395
Query: 456 GKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVA 515
GK R SWN++I G+ Q G+ +AL F +M+S P+ T +SV+ A A L
Sbjct: 396 GKLQS--RTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSI 453
Query: 516 SNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMSSKDIITWNSLICG 575
++ K IHG V+R L+ ++ V +L+D YAK G I+ +R IFD MS + + TWN++I G
Sbjct: 454 THHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDG 513
Query: 576 YVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIP 635
Y HGF AAL+LF++M+ +KPN TFLS+I A S +G+V+ G K F + E Y I
Sbjct: 514 YGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIEL 573
Query: 636 MIEHYSAMIDLYGRSGKLEEAMEFIEDMPIEPDSSIWEALLTACRIHGNIDLAVLAIERL 695
++HY AM+DL GR+G+L EA +FI MP++P +++ A+L AC+IH N++ A A ERL
Sbjct: 574 SMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERL 633
Query: 696 FDLEPGDVLIQRLILQIYAICGKPEDALKVR-KLERENTRRNSFGQCWIEVKNLVYTFVT 754
F+L P D L+ IY E +VR + R+ R+ G +E+KN V++F +
Sbjct: 634 FELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTP-GCSMVEIKNEVHSFFS 692
Query: 755 GGWSESYSDLLYSWLQ----NVPENVTARSSHSGLCXXXXXXXXXXXXXXXXLALAFALI 810
G + S +Y++L+ ++ E ++ L LA++F L+
Sbjct: 693 GSTAHPDSKKIYAFLEKLICHIKEAGYVPDTNLVLGVENDVKEQLLSTHSEKLAISFGLL 752
Query: 811 GSSQAPHTIRIVKNIRMCVHCHETAKYVSMMHHCEIFLADSKCLHHFKNGQCSCGDYW 868
++ A TI + KN+R+C CH KY+S++ EI + D + HHFKNG CSCGDYW
Sbjct: 753 NTT-AGTTIHVRKNLRVCADCHNATKYISLVTGREIVVRDMQRFHHFKNGACSCGDYW 809
|
|
| TAIR|locus:2019160 AT1G74630 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 835 (299.0 bits), Expect = 2.4e-83, P = 2.4e-83
Identities = 195/589 (33%), Positives = 308/589 (52%)
Query: 291 PDVFTWTCMISGFAQNGRTSQALDLFKEMSFVG-VMPNGVTITSAISACTDLKALAMGME 349
PD F + ++ G++++ ++ +F EM G V P+ + I A + ++L G +
Sbjct: 68 PDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGFQ 127
Query: 350 IHSLAVKMGFTDDVLVGNSLINMYSKCEELEAAERVFDMIKDKDVYSWNSMIAGYCQAGY 409
+H A+K G + VG +LI MY C +E A +VFD + ++ +WN++I +
Sbjct: 128 MHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFRGND 187
Query: 410 CGKAYELFIKMQESDVPPNVITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWN 469
A E+F KM + N +WNV+++GYI+ G + A +F M D V SW+
Sbjct: 188 VAGAREIFDKM----LVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDV-----SWS 238
Query: 470 SLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRR 529
++I G G N + FR++Q + PN V++ VL AC+ + K +HG V +
Sbjct: 239 TMIVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKA 298
Query: 530 SLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMSSKD-IITWNSLICGYVLHGFWHAALDL 588
+ V N+LID Y++ GN+ +R +F+GM K I++W S+I G +HG A+ L
Sbjct: 299 GYSWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRL 358
Query: 589 FDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYG 648
F++M ++G+ P+ +F+S++ A S AG+++ G+ F + Y I P IEHY M+DLYG
Sbjct: 359 FNEMTAYGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYG 418
Query: 649 RSGKLEEAMEFIEDMPIEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEP---GDVLI 705
RSGKL++A +FI MPI P + +W LL AC HGNI+LA +RL +L+P GD++
Sbjct: 419 RSGKLQKAYDFICQMPIPPTAIVWRTLLGACSSHGNIELAEQVKQRLNELDPNNSGDLV- 477
Query: 706 QRLILQIYAICGKPEDALKVRKLERENTRRNSFGQCWIEVKNLVYTFVTGGWSESYSDLL 765
L+ YA GK +D +RK + + +EV +Y F G +
Sbjct: 478 --LLSNAYATAGKWKDVASIRKSMIVQRIKKTTAWSLVEVGKTMYKFTAGEKKKGIDIEA 535
Query: 766 YSWLQNVPENVTARSSH-----SGLCXXXXXXXXXXXXXXXX-LALAFALIGSSQAPHTI 819
+ L+ + + + + S L LALAFAL S+ + I
Sbjct: 536 HEKLKEIILRLKDEAGYTPEVASALYDVEEEEKEDQVSKHSEKLALAFALARLSKGAN-I 594
Query: 820 RIVKNIRMCVHCHETAKYVSMMHHCEIFLADSKCLHHFKNGQCSCGDYW 868
RIVKN+R+C CH K S ++ EI + D H FK+G CSC DYW
Sbjct: 595 RIVKNLRICRDCHAVMKLTSKVYGVEILVRDRNRFHSFKDGSCSCRDYW 643
|
|
| TAIR|locus:2124137 DOT4 "DEFECTIVELY ORGANIZED TRIBUTARIES 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 812 (290.9 bits), Expect = 6.6e-81, P = 6.6e-81
Identities = 258/857 (30%), Positives = 434/857 (50%)
Query: 45 LDSIATQGAKVR-RNTYINLLQACIDSNSIHLARKLHAFLNLVTEIDVFVKTKLLSVYAK 103
+DSI T V NT L + C +S ++ A KL ++ +ID +L + A
Sbjct: 51 VDSITTFDRSVTDANT--QLRRFC-ESGNLENAVKLLC-VSGKWDIDPRTLCSVLQLCAD 106
Query: 104 CGCLDDAREVFEDMRERNLYTWSAMIGA-----YSRDQRWREVVELFF-LMVQDGLFPDD 157
L D +EV +R N + + +G+ Y+ +E +F + ++ LF +
Sbjct: 107 SKSLKDGKEVDNFIRG-NGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWN- 164
Query: 158 FLFPKILQACGNCGDFEAGKLMHSLVIKLG---MSCVRRVRNSVLAVYVKCGKLIWARRF 214
L ++ ++ G K M S +++ SCV + +S+ +V+ G+ +
Sbjct: 165 ILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHG--GEQLHGFIL 222
Query: 215 FESMDEKDGVAWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQLGQC 274
E++ V NS+++ Y + D A ++FD+M + V+++N +I Y G
Sbjct: 223 KSGFGERNSVG-NSLVAFYLKNQRVDSARKVFDEMTERD----VISWNSIINGYVSNGLA 277
Query: 275 DVAMEMVKRMESLGITPDVFTWTCMISGFAQN-----GRTSQALDLFKEMSFVGVMPNGV 329
+ + + +M GI D+ T + +G A + GR ++ + S N
Sbjct: 278 EKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCN-- 335
Query: 330 TITSAISACTDL-KALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEELEA-AERVFD 387
T+ S C DL A A+ E+ +V + +T S+I Y++ E L A ++F+
Sbjct: 336 TLLDMYSKCGDLDSAKAVFREMSDRSV-VSYT-------SMIAGYAR-EGLAGEAVKLFE 386
Query: 388 MIKDK----DVYSWNSMIAGYCQAGYC----GKAYELFIKMQESDVPPNVITWNVLISGY 439
++++ DVY+ +++ C A Y GK +IK E+D+ ++ N L+ Y
Sbjct: 387 EMEEEGISPDVYTVTAVLN--CCARYRLLDEGKRVHEWIK--ENDLGFDIFVSNALMDMY 442
Query: 440 IQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKM-QSSCFYP 498
+ G+ EA +F M +VK + SWN++I GY + N AL +F + + F P
Sbjct: 443 AKCGSMQEAELVFSEM----RVK-DIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSP 497
Query: 499 NCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIF 558
+ T+ VLPACA L A +K +EIHG ++R S V NSL+D YAK G ++ + +F
Sbjct: 498 DERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLF 557
Query: 559 DGMSSKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVD 618
D ++SKD+++W +I GY +HGF A+ LF+QM+ G++ + +F+S++ A S +G+VD
Sbjct: 558 DDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVD 617
Query: 619 LGKKVFCSIT-ECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPIEPDSSIWEALLT 677
G + F + EC +I P +EHY+ ++D+ R+G L +A FIE+MPI PD++IW ALL
Sbjct: 618 EGWRFFNIMRHEC-KIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLC 676
Query: 678 ACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRK-LERENTRRN 736
CRIH ++ LA E++F+LEP + L+ IYA K E ++RK + + R+N
Sbjct: 677 GCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKN 736
Query: 737 SFGQCWIEVKNLVYTFVTGGWSESYSDLLYSWLQNV-----PENVTARSSHSGLCXXXXX 791
G WIE+K V FV G S ++ + ++L+ V E + + ++ +
Sbjct: 737 P-GCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIEEGYSPLTKYALIDAEEME 795
Query: 792 XXXXXXXXXXXLALAFALIGSSQAPHTIRIVKNIRMCVHCHETAKYVSMMHHCEIFLADS 851
LA+A +I S IR+ KN+R+C CHE AK++S + EI L DS
Sbjct: 796 KEEALCGHSEKLAMALGIISSGHGK-IIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDS 854
Query: 852 KCLHHFKNGQCSCGDYW 868
H FK+G CSC +W
Sbjct: 855 NRFHQFKDGHCSCRGFW 871
|
|
| TAIR|locus:2060640 OTP81 "ORGANELLE TRANSCRIPT PROCESSING 81" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 808 (289.5 bits), Expect = 1.8e-80, P = 1.8e-80
Identities = 203/683 (29%), Positives = 342/683 (50%)
Query: 199 LAVYVKCGKLIWARRFFESMDEKDGVAWNSMISGYFQIGEND--EAHRLFDKMCREEIKL 256
+A L +AR+ F+ + + + AWN++I Y G + D + +
Sbjct: 71 MAALSSFASLEYARKVFDEIPKPNSFAWNTLIRAYAS-GPDPVLSIWAFLDMVSESQCYP 129
Query: 257 GVVTFNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLF 316
TF LI++ ++ + + + DVF +I + G A +F
Sbjct: 130 NKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVF 189
Query: 317 KEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKC 376
+ V+ I + + KAL + ++ S VK +VG +++ +K
Sbjct: 190 TTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHV--TMVG--VLSACAKI 245
Query: 377 EELEAAERVFDMIKDKDVYS----WNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITW 432
LE +V I++ V N+M+ Y + G A LF M+E D NV TW
Sbjct: 246 RNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKD---NV-TW 301
Query: 433 NVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQ 492
++ GY + + + A ++ M + D V +WN+LI+ Y+Q G+ N AL VF ++Q
Sbjct: 302 TTMLDGYAISEDYEAAREVLNSMPQKDIV-----AWNALISAYEQNGKPNEALIVFHELQ 356
Query: 493 -SSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNI 551
N +T++S L ACA + A + IH + + + + V ++LI Y+K G++
Sbjct: 357 LQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDL 416
Query: 552 VYSRTIFDGMSSKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAH 611
SR +F+ + +D+ W+++I G +HG + A+D+F +M+ +KPN TF ++ A
Sbjct: 417 EKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCAC 476
Query: 612 SLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPIEPDSSI 671
S G+VD + +F + Y I+P +HY+ ++D+ GRSG LE+A++FIE MPI P +S+
Sbjct: 477 SHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSV 536
Query: 672 WEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLERE 731
W ALL AC+IH N++LA +A RL +LEP + L+ IYA GK E+ ++RK R
Sbjct: 537 WGALLGACKIHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRV 596
Query: 732 NTRRNSFGQCWIEVKNLVYTFVTGGWSESYSDLLYSWLQNVPENVTAR------SSHSGL 785
+ G IE+ +++ F++G + S+ +Y L V E + + S +
Sbjct: 597 TGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEISQVLQI 656
Query: 786 CXXXXXXXXXXXXXXXXLALAFALIGSSQAPHTIRIVKNIRMCVHCHETAKYVSMMHHCE 845
LA+ + LI S++AP IR++KN+R+C CH AK +S ++ E
Sbjct: 657 IEEEEMKEQSLNLHSEKLAICYGLI-STEAPKVIRVIKNLRVCGDCHSVAKLISQLYDRE 715
Query: 846 IFLADSKCLHHFKNGQCSCGDYW 868
I + D HHF+NGQCSC D+W
Sbjct: 716 IIVRDRYRFHHFRNGQCSCNDFW 738
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9FXH1 | PPR52_ARATH | No assigned EC number | 0.6039 | 0.9827 | 0.9541 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 868 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-161 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-100 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 9e-47 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 6e-42 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-31 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-16 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 4e-15 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-14 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-13 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-10 | |
| pfam14432 | 116 | pfam14432, DYW_deaminase, DYW family of nucleic ac | 5e-09 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 4e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 6e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 4e-05 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 5e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 7e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 8e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 9e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 6e-04 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 7e-04 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 0.001 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.001 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.001 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.001 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.001 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.002 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.003 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 491 bits (1265), Expect = e-161
Identities = 288/900 (32%), Positives = 448/900 (49%), Gaps = 128/900 (14%)
Query: 12 LHSLLTKKSNPRFRDTHLDFLCGNGRLNEAITVLDSIATQGAKVRRNTYINLLQACIDSN 71
L + S+ ++ L LC +G+L +A+ +L+S+ V + Y+ L + C
Sbjct: 41 LSVAASSSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKR 100
Query: 72 SIHLARKLHAF-LNLVTEIDVFVKTKLLSVYAKCGCLDDAREVFEDMRERNLYTWSAMIG 130
++ ++ + L+ + V + +LS++ + G L A VF M ER+L++W+ ++G
Sbjct: 101 AVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVG 160
Query: 131 AYSRDQRWREVVELFFLMVQDGLFPDDFLFPKILQACGNCGDFEAGKLMHSLVIKLGMSC 190
Y++ + E + L+ M+ G+ PD + FP +L+ CG D G+ +H+ V++ G
Sbjct: 161 GYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFEL 220
Query: 191 VRRVRNSVLAVYVKCGKLIWARRFFESMDEKDGVAWNSMISGYFQIGENDEAHRLFDKMC 250
V N+++ +YVKCG ++ AR F+ M +D ++WN+MISGYF EN E
Sbjct: 221 DVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYF---ENGE--------- 268
Query: 251 REEIKLGVVTFNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTS 310
C +E+ M L + PD+ T T
Sbjct: 269 -----------------------CLEGLELFFTMRELSVDPDLMTIT------------- 292
Query: 311 QALDLFKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLI 370
S ISAC L +G E+H VK GF DV V NSLI
Sbjct: 293 ----------------------SVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLI 330
Query: 371 NMYSKCEELEAAERVFDMIKDKDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPN-- 428
MY AE+VF ++ KD SW +MI+GY + G KA E + M++ +V P+
Sbjct: 331 QMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEI 390
Query: 429 ---------------------------------VITWNVLISGYIQNGNEDEAVDLFQRM 455
V+ N LI Y + D+A+++F +
Sbjct: 391 TIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNI 450
Query: 456 GKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVA 515
+ D + SW S+IAG + + AL FR+M + PN VT+++ L ACA + A
Sbjct: 451 PEKDVI-----SWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGA 504
Query: 516 SNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMSSKDIITWNSLICG 575
KEIH VLR + + N+L+D Y + G + Y+ F+ KD+++WN L+ G
Sbjct: 505 LMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFN-SHEKDVVSWNILLTG 563
Query: 576 YVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIP 635
YV HG A++LF++M G+ P+ TF+S++ A S +GMV G + F S+ E Y I P
Sbjct: 564 YVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITP 623
Query: 636 MIEHYSAMIDLYGRSGKLEEAMEFIEDMPIEPDSSIWEALLTACRIHGNIDLAVLAIERL 695
++HY+ ++DL GR+GKL EA FI MPI PD ++W ALL ACRIH +++L LA + +
Sbjct: 624 NLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHI 683
Query: 696 FDLEPGDVLIQRLILQIYAICGKPEDALKVRKLERENTRRNSFGQCWIEVKNLVYTFVTG 755
F+L+P V L+ +YA GK ++ +VRK REN G W+EVK V+ F+T
Sbjct: 684 FELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTD 743
Query: 756 GWSESYSDLLYSWLQNVPENVTARSSHSGLCIEEEE--------KEEISGIHSEKLALAF 807
ES+ + + V E + SGL E K++I HSE+LA+AF
Sbjct: 744 --DESHPQI--KEINTVLEGFYEKMKASGLAGSESSSMDEIEVSKDDIFCGHSERLAIAF 799
Query: 808 ALIGSSQAPHT-IRIVKNIRMCVHCHETAKYVSMMHHCEIFLADSKCLHHFKNGQCSCGD 866
LI + P I + KN+ MC +CH T K++S + EI + D++ HHFK+G+CSCGD
Sbjct: 800 GLINT--VPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 327 bits (839), Expect = e-100
Identities = 185/613 (30%), Positives = 313/613 (51%), Gaps = 53/613 (8%)
Query: 300 ISGFAQNGRTSQALDLFK--EMSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLAVKM 357
I GR +AL+LF+ E +P T + + AC LK++ ++
Sbjct: 94 IEKLVACGRHREALELFEILEAGCPFTLPAS-TYDALVEACIALKSIRCVKAVYWHVESS 152
Query: 358 GFTDDVLVGNSLINMYSKCEELEAAERVFDMIKDKDVYSWNSMIAGYCQAGYCGKAYELF 417
GF D + N ++ M+ KC L A R+FD + ++++ SW ++I G AG +A+ LF
Sbjct: 153 GFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALF 212
Query: 418 IKMQE--SDVPPNVIT---------WNV------------------------LISGYIQN 442
+M E SD P + LI Y +
Sbjct: 213 REMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKC 272
Query: 443 GNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVT 502
G+ ++A +F M + + T +WNS++AGY G AL ++ +M+ S + T
Sbjct: 273 GDIEDARCVFDGMPE-----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFT 327
Query: 503 ILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMS 562
++ + L K+ H ++R + +L+D Y+K G + +R +FD M
Sbjct: 328 FSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP 387
Query: 563 SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKK 622
K++I+WN+LI GY HG A+++F++M + G+ PN TFL+++ A +G+ + G +
Sbjct: 388 RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWE 447
Query: 623 VFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPIEPDSSIWEALLTACRIH 682
+F S++E ++I P HY+ MI+L GR G L+EA I P +P ++W ALLTACRIH
Sbjct: 448 IFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIH 507
Query: 683 GNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKV-RKLERENTRRNSFGQC 741
N++L LA E+L+ + P + ++L +Y G+ +A KV L+R+ + C
Sbjct: 508 KNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHP--AC 565
Query: 742 -WIEVKNLVYTFVTGGWSESYSDLLYSWLQNVPENVT-----ARSSHSGLCIEEEEKEEI 795
WIEVK ++F +G S +Y L + + ++ A + ++E+E++
Sbjct: 566 TWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVS 625
Query: 796 SGIHSEKLALAFALIGSSQAPHTIRIVKNIRMCVHCHETAKYVSMMHHCEIFLADSKCLH 855
HSEKLA+AF LI +S+ ++I ++ R+C CH+ K+++++ EI + D+ H
Sbjct: 626 GRYHSEKLAIAFGLINTSEW-TPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFH 684
Query: 856 HFKNGQCSCGDYW 868
HFK G+CSCGDYW
Sbjct: 685 HFKLGKCSCGDYW 697
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 178 bits (452), Expect = 9e-47
Identities = 115/457 (25%), Positives = 203/457 (44%), Gaps = 72/457 (15%)
Query: 36 GRLNEAITVLDSIATQGA-KVRRNTYINLLQACIDSNSIHLARKLHAFL-NLVTEIDVFV 93
GR EA+ + + + + +TY L++ACI SI + ++ + + E D ++
Sbjct: 101 GRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYM 160
Query: 94 KTKLLSVYAKCGCLDDAREVFEDMRERNLYTWSAMIGAYSRDQRWREVVELFFLMVQDGL 153
++L ++ KCG L DAR +F++M ERNL +W +IG +RE LF M +DG
Sbjct: 161 MNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGS 220
Query: 154 FPDDFLFPKILQACGNCGDFEAGKLMHSLVIKLGMSCVRRVRNSVLAVYVKCGKLIWARR 213
+ F +L+A G AG+ +H V+K G+ V +++ +Y KCG +
Sbjct: 221 DAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDI----- 275
Query: 214 FFESMDEKDGVAWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQLGQ 273
++A +FD M +
Sbjct: 276 --------------------------EDARCVFDGMPEKT-------------------- 289
Query: 274 CDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITS 333
W M++G+A +G + +AL L+ EM GV + T +
Sbjct: 290 -------------------TVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSI 330
Query: 334 AISACTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEELEAAERVFDMIKDKD 393
I + L L + H+ ++ GF D++ +L+++YSK +E A VFD + K+
Sbjct: 331 MIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKN 390
Query: 394 VYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNVLISGYIQNGNEDEAVDLFQ 453
+ SWN++IAGY G KA E+F +M V PN +T+ ++S +G ++ ++FQ
Sbjct: 391 LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQ 450
Query: 454 RMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRK 490
M +N ++K + +I + G + A + R+
Sbjct: 451 SMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRR 487
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 163 bits (415), Expect = 6e-42
Identities = 110/417 (26%), Positives = 171/417 (41%), Gaps = 101/417 (24%)
Query: 137 RWREVVELFFLMVQDGLFP-DDFLFPKILQACGNCGDFEAGKLMHSLVIKLGMSCVRRVR 195
R RE +ELF ++ F + +++AC K ++ V G + +
Sbjct: 102 RHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMM 161
Query: 196 NSVLAVYVKCGKLIWARRFFESMDEKDGVAWNSMISGYFQIGENDEAHRLFDKMCREEIK 255
N VL ++VKCG LI +A RLFD
Sbjct: 162 NRVLLMHVKCGMLI-------------------------------DARRLFD-------- 182
Query: 256 LGVVTFNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDL 315
EM +R ++ +W +I G G +A L
Sbjct: 183 -----------------------EMPER--------NLASWGTIIGGLVDAGNYREAFAL 211
Query: 316 FKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSK 375
F+EM G T + A L + G ++H +K G D V +LI+MYSK
Sbjct: 212 FREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSK 271
Query: 376 CEELEAAERVFDMIKDKDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNVL 435
C ++E A VFD + +K +WNSM+AGY GY +A L+ +M++S V + T++++
Sbjct: 272 CGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIM 331
Query: 436 I----------------SGYIQNGNEDEA------VDLFQRMGKNDKVK--------RNT 465
I +G I+ G + VDL+ + G+ + + +N
Sbjct: 332 IRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNL 391
Query: 466 ASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEI 522
SWN+LIAGY G+ A+ +F +M + PN VT L+VL AC Y S + EI
Sbjct: 392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEI 448
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 131 bits (332), Expect = 1e-31
Identities = 93/365 (25%), Positives = 164/365 (44%), Gaps = 12/365 (3%)
Query: 36 GRLNEAITVLDSIATQGAKVRRNTYINLLQACIDSNSIHLARKLHA-FLNLVTEIDVFVK 94
G EA + + G+ T++ +L+A S ++LH L D FV
Sbjct: 203 GNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVS 262
Query: 95 TKLLSVYAKCGCLDDAREVFEDMRERNLYTWSAMIGAYSRDQRWREVVELFFLMVQDGLF 154
L+ +Y+KCG ++DAR VF+ M E+ W++M+ Y+ E + L++ M G+
Sbjct: 263 CALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS 322
Query: 155 PDDFLFPKILQACGNCGDFEAGKLMHSLVIKLGMSCVRRVRNSVLA-VYVKCGKLIWARR 213
D F F +++ E K H+ +I+ G + V N+ L +Y K G++ AR
Sbjct: 323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFP-LDIVANTALVDLYSKWGRMEDARN 381
Query: 214 FFESMDEKDGVAWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQLGQ 273
F+ M K+ ++WN++I+GY G +A +F++M E + VTF ++ + G
Sbjct: 382 VFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGL 441
Query: 274 CDVAMEMVKRM-ESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTIT 332
+ E+ + M E+ I P + CMI + G +A + + F P
Sbjct: 442 SEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFK---PTVNMWA 498
Query: 333 SAISACTDLKALAMGMEIHSLAVKMGFTDDVLVGN--SLINMYSKCEELEAAERVFDMIK 390
+ ++AC K L +G MG + N L+N+Y+ A +V + +K
Sbjct: 499 ALLTACRIHKNLELGRLAAEKLYGMGPEK---LNNYVVLLNLYNSSGRQAEAAKVVETLK 555
Query: 391 DKDVY 395
K +
Sbjct: 556 RKGLS 560
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 83.4 bits (206), Expect = 3e-16
Identities = 90/415 (21%), Positives = 173/415 (41%), Gaps = 34/415 (8%)
Query: 216 ESMDEKDGVAWNSMI-SGYFQI----GENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQ 270
E M+++ + + + + +F+ EA R F K+ R + TFN+L+
Sbjct: 394 EDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFR-FAKLIRNPT---LSTFNMLMSVCAS 449
Query: 271 LGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVT 330
D A+ +++ ++ G+ D +T +IS A++G+ ++F EM GV N T
Sbjct: 450 SQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHT 509
Query: 331 ITSAISACTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEELEAAERVFDMIK 390
+ I C +A + + D +V N+LI+ C + A +R FD++
Sbjct: 510 FGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALIS---ACGQSGAVDRAFDVLA 566
Query: 391 ---------DKDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVP--PNVITWNVLISGY 439
D D + +++ AG +A E++ + E ++ P V T + ++
Sbjct: 567 EMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYT--IAVNSC 624
Query: 440 IQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLI--AGYQQLGQKNNALGVFRKMQSSCFY 497
Q G+ D A+ ++ M K VK + +++L+ AG+ K A + + +
Sbjct: 625 SQKGDWDFALSIYDDMKKKG-VKPDEVFFSALVDVAGHAGDLDK--AFEILQDARKQGIK 681
Query: 498 PNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTI 557
V+ S++ AC+ K E++ + L ++ MN+LI + + + +
Sbjct: 682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEV 741
Query: 558 FDGMSS----KDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSII 608
M + IT++ L+ LDL Q K G+KPN I
Sbjct: 742 LSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT 796
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 79.5 bits (196), Expect = 4e-15
Identities = 41/144 (28%), Positives = 73/144 (50%), Gaps = 1/144 (0%)
Query: 35 NGRLNEAITVLDSIATQGAKVRRNTYINLLQACIDSNSIHLARKLHAFL-NLVTEIDVFV 93
+G EA+ + + G + + T+ +++ + A++ HA L +D+
Sbjct: 303 HGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVA 362
Query: 94 KTKLLSVYAKCGCLDDAREVFEDMRERNLYTWSAMIGAYSRDQRWREVVELFFLMVQDGL 153
T L+ +Y+K G ++DAR VF+ M +NL +W+A+I Y R + VE+F M+ +G+
Sbjct: 363 NTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGV 422
Query: 154 FPDDFLFPKILQACGNCGDFEAGK 177
P+ F +L AC G E G
Sbjct: 423 APNHVTFLAVLSACRYSGLSEQGW 446
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 78.0 bits (192), Expect = 1e-14
Identities = 98/450 (21%), Positives = 177/450 (39%), Gaps = 84/450 (18%)
Query: 53 AKVRRN----TYINLLQACIDSNSIHLARKLHAFLNLVTE----IDVFVKTKLLSVYAKC 104
AK+ RN T+ L+ C S I A ++ L LV E D + T L+S AK
Sbjct: 429 AKLIRNPTLSTFNMLMSVCASSQDIDGALRV---LRLVQEAGLKADCKLYTTLISTCAKS 485
Query: 105 GCLDDAREVFEDMR----ERNLYTWSAMIGAYSRDQRWREVVELFFLMVQDGLFPDDFLF 160
G +D EVF +M E N++T+ A+I +R + + + +M + PD +F
Sbjct: 486 GKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVF 545
Query: 161 PKILQACGNCGDFEAGKLMHSLVIKLGMSCVRRVRNSVLAVYVKCGKLIWARRFFESMDE 220
++ ACG G V R + VLA I +
Sbjct: 546 NALISACGQSG------------------AVDRAFD-VLAEMKAETHPI----------D 576
Query: 221 KDGVAWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQLGQCDVAMEM 280
D + +++ G+ D A ++ + IK + I + S +Q G D A+ +
Sbjct: 577 PDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSI 636
Query: 281 VKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISACTD 340
M+ G+ PD ++ ++ G +A ++ ++ G+ V+ +S + AC++
Sbjct: 637 YDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSN 696
Query: 341 L----KALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEELEAAERVFDMIKDKDVYS 396
KAL + +I S+ ++ V +
Sbjct: 697 AKNWKKALELYEDIKSIKLR-----------------------------------PTVST 721
Query: 397 WNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNVLISGYIQNGNEDEAVDLFQRMG 456
N++I C+ KA E+ +M+ + PN IT+++L+ + + D +DL +
Sbjct: 722 MNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQA- 780
Query: 457 KNDKVKRNTASWNSLIAGYQQLGQKNNALG 486
K D +K N + + +K ALG
Sbjct: 781 KEDGIKPNLVMCRCITGLCLRRFEKACALG 810
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 65.9 bits (162), Expect = 1e-13
Identities = 19/48 (39%), Positives = 33/48 (68%)
Query: 392 KDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNVLISGY 439
DV ++N++I GYC+ G +A +LF +M++ + PNV T+++LI G
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 69.9 bits (171), Expect = 4e-12
Identities = 71/384 (18%), Positives = 157/384 (40%), Gaps = 54/384 (14%)
Query: 321 FVGVMPNGV--TITSAISACTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEE 378
F ++ N T +S C + + + + L + G D + +LI+ +K +
Sbjct: 428 FAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGK 487
Query: 379 LEAAERVF-DMIK---DKDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNV 434
++A VF +M+ + +V+++ ++I G +AG KA+ + M+ +V P+ + +N
Sbjct: 488 VDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNA 547
Query: 435 LISGYIQNGNEDEAVDLFQRMGKNDK-VKRNTASWNSLIAGYQQLGQKNNALGVFRKMQS 493
LIS Q+G D A D+ M + + + +L+ GQ + A V++ +
Sbjct: 548 LISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHE 607
Query: 494 SCF--YPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNI 551
P TI ++ C ++ G+
Sbjct: 608 YNIKGTPEVYTIA-----------------VNSC--------------------SQKGDW 630
Query: 552 VYSRTIFDGMSSKDI----ITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSI 607
++ +I+D M K + + +++L+ G A ++ + G+K ++ S+
Sbjct: 631 DFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSL 690
Query: 608 ILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMP--- 664
+ A S A +++ I + ++ P + +A+I +L +A+E + +M
Sbjct: 691 MGACSNAKNWKKALELYEDI-KSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLG 749
Query: 665 IEPDSSIWEALLTACRIHGNIDLA 688
+ P++ + LL A + D+
Sbjct: 750 LCPNTITYSILLVASERKDDADVG 773
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 58.6 bits (143), Expect = 3e-11
Identities = 18/45 (40%), Positives = 30/45 (66%)
Query: 224 VAWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTFNILIRSY 268
V +N++I GY + G+ +EA +LF++M + IK V T++ILI
Sbjct: 4 VTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 58.2 bits (142), Expect = 4e-11
Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 291 PDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISAC 338
PDV T+ +I G+ + G+ +AL LF EM G+ PN T + I
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 57.4 bits (140), Expect = 7e-11
Identities = 17/48 (35%), Positives = 31/48 (64%)
Query: 258 VVTFNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQ 305
VVT+N LI Y + G+ + A+++ M+ GI P+V+T++ +I G +
Sbjct: 3 VVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 55.1 bits (134), Expect = 6e-10
Identities = 20/45 (44%), Positives = 29/45 (64%)
Query: 564 KDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSII 608
D++T+N+LI GY G AL LF++MK G+KPN T+ +I
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILI 45
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 55.1 bits (134), Expect = 6e-10
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 427 PNVITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGY 475
P+V+T+N LI GY + G +EA+ LF M K +K N +++ LI G
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRG-IKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|222749 pfam14432, DYW_deaminase, DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 5e-09
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Query: 799 HSEKLALAFALIGSSQAPHTIRIVKNIRMCVHCHETAKYVSMMHHCEIFLADSKCLHHFK 858
H+EK ALA+ L+ T I RMC CHE +Y++ EI + D HHFK
Sbjct: 63 HAEKQALAYGLL------TTRIIKVLKRMCGDCHEFFRYIAKYTGREIIVRDPSRFHHFK 116
|
A family of nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members of this family are present in bacteria, plants, Naegleria, and fungi. Plants and Naegleria show lineage-specific expansions of this family. The classical DYW family contain an additional C-terminal metal-binding cluster composed of 2 histidines and a CxC motif and are often fused to PPR repeats. Ascomycete versions, which are independent lateral transfers, contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems. Length = 116 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 1e-08
Identities = 57/269 (21%), Positives = 106/269 (39%), Gaps = 49/269 (18%)
Query: 97 LLSVYAKCGCLDDAREVFEDMRERNL------YTWSAMIGAYSRDQRWREVVELFFLMVQ 150
L+ A G +D A+EV++ + E N+ YT + + S+ W + ++ M +
Sbjct: 585 LMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYT--IAVNSCSQKGDWDFALSIYDDMKK 642
Query: 151 DGLFPDDFLFPKILQACGNCGD----FEAGKLMHSLVIKLGMSCVRRVRNSVLAVYVKCG 206
G+ PD+ F ++ G+ GD FE + IKLG
Sbjct: 643 KGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGT------------------ 684
Query: 207 KLIWARRFFESMDEKDGVAWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTFNILIR 266
V+++S++ +A L++ + +++ V T N LI
Sbjct: 685 -----------------VSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALIT 727
Query: 267 SYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMP 326
+ + Q A+E++ M+ LG+ P+ T++ ++ + LDL + G+ P
Sbjct: 728 ALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKP 787
Query: 327 NGVTITSAISACTDL--KALAMGMEIHSL 353
N V C KA A+G + S
Sbjct: 788 NLVMCRCITGLCLRRFEKACALGEPVVSF 816
|
Length = 1060 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 47.3 bits (114), Expect = 2e-07
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 288 GITPDVFTWTCMISGFAQNGRTSQALDLFKEMS 320
G+ PDV T+ +I G + GR +A++L EM
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 46.6 bits (112), Expect = 4e-07
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 423 SDVPPNVITWNVLISGYIQNGNEDEAVDLFQRM 455
+ P+V+T+N LI G + G DEAV+L M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 2e-06
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 567 ITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPN 600
+T+N+LI G G AL+LF +MK G++P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 6e-06
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 395 YSWNSMIAGYCQAGYCGKAYELFIKMQESDV 425
++NS+I+GYC+AG +A ELF +M+E V
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 2e-05
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 90 DVFVKTKLLSVYAKCGCLDDAREVFEDMRER----NLYTWSAMIGAYSR 134
DV L+ Y K G +++A ++F +M++R N+YT+S +I +
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 2e-05
Identities = 14/44 (31%), Positives = 29/44 (65%), Gaps = 4/44 (9%)
Query: 367 NSLINMYSKCEELEAAERVFDMIKDK----DVYSWNSMIAGYCQ 406
N+LI+ Y K ++E A ++F+ +K + +VY+++ +I G C+
Sbjct: 7 NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 2e-05
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 567 ITWNSLICGYVLHGFWHAALDLFDQMKSFGL 597
+T+NSLI GY G AL+LF +MK G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 4e-05
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 430 ITWNVLISGYIQNGNEDEAVDLFQRMGKND 459
+T+N LISGY + G +EA++LF+ M +
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKG 30
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 5e-05
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 566 IITWNSLICGYVLHGFWHAALDLFDQMKSFGLKP 599
+ T+N+L+ G AL + ++MK+ GLKP
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 7e-05
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 294 FTWTCMISGFAQNGRTSQALDLFKEM 319
T+ +ISG+ + G+ +AL+LFKEM
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEM 26
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 8e-05
Identities = 14/35 (40%), Positives = 24/35 (68%)
Query: 395 YSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNV 429
++N++I G C+AG +A ELF +M+E + P+V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 9e-05
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 294 FTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPN 327
T+ +I G + GR +AL+LFKEM G+ P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 1e-04
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 259 VTFNILIRSYNQLGQCDVAMEMVKRMESLGITPDV 293
VT+N LI + G+ + A+E+ K M+ GI PDV
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 1e-04
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 224 VAWNSMISGYFQIGENDEAHRLFDKMCREEI 254
V +NS+ISGY + G+ +EA LF +M + +
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 39.3 bits (93), Expect = 2e-04
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 393 DVYSWNSMIAGYCQAGYCGKAYELFIKMQ 421
DV ++N++I G C+AG +A EL +M+
Sbjct: 6 DVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 3e-04
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 123 YTWSAMIGAYSRDQRWREVVELFFLMVQDGLFPDD 157
T++ +I + R E +ELF M + G+ PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 6e-04
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 259 VTFNILIRSYNQLGQCDVAMEMVKRMESLGI 289
VT+N LI Y + G+ + A+E+ K M+ G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 7e-04
Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 3/94 (3%)
Query: 397 WNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNVLISGYIQNGNEDEAVDLFQRMG 456
++ Y + G +A E + K E D P N + L + Y + G +EA++ +++
Sbjct: 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61
Query: 457 KNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRK 490
+ D N ++ +L Y +LG+ AL + K
Sbjct: 62 ELDP--DNAKAYYNLGLAYYKLGKYEEALEAYEK 93
|
Length = 100 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 0.001
Identities = 30/112 (26%), Positives = 56/112 (50%), Gaps = 6/112 (5%)
Query: 585 ALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMI 644
AL + ++ GLK + + ++I + +G VD +VF + + + + A+I
Sbjct: 456 ALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEM-VNAGVEANVHTFGALI 514
Query: 645 DLYGRSGKLEEAMEFIEDM---PIEPDSSIWEALLTACRIHGNIDLA--VLA 691
D R+G++ +A M ++PD ++ AL++AC G +D A VLA
Sbjct: 515 DGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLA 566
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 0.001
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 464 NTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVT 502
+ ++N+LI GY + G+ AL +F +M+ PN T
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYT 40
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 0.001
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 430 ITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNT 465
+T+N LI G + G +EA++LF+ M K ++ +
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEM-KERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 0.001
Identities = 11/24 (45%), Positives = 19/24 (79%)
Query: 640 YSAMIDLYGRSGKLEEAMEFIEDM 663
Y+++I Y ++GKLEEA+E ++M
Sbjct: 3 YNSLISGYCKAGKLEEALELFKEM 26
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 0.001
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 123 YTWSAMIGAYSRDQRWREVVELFFLMVQDGL 153
T++++I Y + + E +ELF M + G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 36.2 bits (85), Expect = 0.002
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 222 DGVAWNSMISGYFQIGENDEAHRLFDKM 249
D V +N++I G + G DEA L D+M
Sbjct: 6 DVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 35.4 bits (83), Expect = 0.003
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 565 DIITWNSLICGYVLHGFWHAALDLFDQMK 593
D++T+N+LI G G A++L D+M+
Sbjct: 6 DVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 868 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PF14432 | 116 | DYW_deaminase: DYW family of nucleic acid deaminas | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.96 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.95 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.94 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.94 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.87 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.82 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.82 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.82 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.82 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.82 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.79 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.79 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.75 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.75 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.74 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.74 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.73 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.73 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.73 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.69 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.68 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.67 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.65 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.65 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.56 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.55 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.54 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.49 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.44 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.42 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.41 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.4 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.39 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.38 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.38 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.37 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.34 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.33 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.32 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.29 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.28 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.28 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.27 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.27 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.27 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.23 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.22 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.16 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.16 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.16 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.15 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.14 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.13 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.1 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.1 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.06 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.05 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.05 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.03 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.03 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.03 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.01 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.01 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.0 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.0 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 98.98 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.97 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 98.97 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 98.96 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.92 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 98.9 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.89 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.88 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.86 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.85 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.84 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.84 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.7 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.7 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.66 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.65 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.64 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.64 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.61 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.58 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.56 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.54 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.54 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.53 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.53 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.5 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.5 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.48 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.48 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.43 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.42 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.4 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.39 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.37 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.36 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.35 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.33 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.31 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.29 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.28 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.26 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.23 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.22 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.21 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.18 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.17 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.15 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.12 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.11 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.11 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.1 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.09 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.08 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.07 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.02 | |
| PLN02789 | 320 | farnesyltranstransferase | 97.99 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 97.97 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.97 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.96 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 97.96 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.91 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.89 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.85 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.83 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.83 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.83 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.74 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.69 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.66 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.66 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.64 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.63 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.62 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.62 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.61 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.6 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.6 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.57 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.56 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.55 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.54 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.54 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.51 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.51 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.48 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.43 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.41 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.4 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.39 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.37 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.36 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.36 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.34 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.28 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.21 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.21 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.19 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.16 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.12 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.11 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.1 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.09 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.09 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.0 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.0 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.0 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.99 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 96.97 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.95 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.93 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.92 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.91 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.89 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.89 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.89 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 96.87 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 96.84 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.8 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.68 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.68 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.67 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.61 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.53 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.5 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.42 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.42 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.41 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.39 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.34 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.33 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.3 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.27 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.24 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.18 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.1 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.06 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.06 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.95 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.94 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 95.93 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.88 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 95.82 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 95.81 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 95.81 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.67 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.44 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.19 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.05 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 94.87 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.86 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 94.86 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 94.85 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 94.81 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 94.69 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 94.65 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.59 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 94.5 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.48 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 94.33 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.19 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.0 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 93.92 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 93.76 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 93.75 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 93.63 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 93.38 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 93.35 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 93.31 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.3 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 93.17 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 93.09 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 93.08 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.06 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 92.97 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 92.87 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 92.61 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 92.28 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 92.23 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 92.08 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 92.07 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 92.0 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 91.84 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 91.77 | |
| PRK12798 | 421 | chemotaxis protein; Reviewed | 91.54 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 91.54 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 91.44 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 91.4 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 91.19 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 91.15 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 91.14 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 90.87 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 90.81 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 90.56 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 90.51 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 90.39 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 90.35 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 90.33 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 90.14 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 90.01 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 89.42 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 89.37 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 89.05 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 88.59 | |
| KOG4279 | 1226 | consensus Serine/threonine protein kinase [Signal | 88.3 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 88.17 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 87.99 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 87.91 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 87.73 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 87.6 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 87.48 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 87.2 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 87.14 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 86.66 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 86.44 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 86.33 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 86.04 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 85.74 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 85.44 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 85.05 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 84.69 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 84.58 | |
| PRK09687 | 280 | putative lyase; Provisional | 84.19 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 84.15 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 83.11 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 82.61 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 82.18 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 81.95 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 81.79 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 81.04 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 80.96 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 80.83 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 80.83 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 80.3 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-159 Score=1425.26 Aligned_cols=802 Identities=32% Similarity=0.540 Sum_probs=764.7
Q ss_pred CCCCcchHHHHHHHHhCCChhHHHHHHHHHhhcCCCCCcccHHHHHHHHhccCChHHHHHHHHHh-hhcCCCChhhhhHH
Q 047992 19 KSNPRFRDTHLDFLCGNGRLNEAITVLDSIATQGAKVRRNTYINLLQACIDSNSIHLARKLHAFL-NLVTEIDVFVKTKL 97 (868)
Q Consensus 19 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~i~~~~-~~~~~~~~~~~~~l 97 (868)
.|++..++.++.++++.|++++|+.+|+.|...|..|+..+|..++++|.+.+.+..|.++|..+ +.+..++..++|+|
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~l 127 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM 127 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence 44555789999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHhcCChhHHHHHHhhcCCCCceeHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHhhCCCChHHHH
Q 047992 98 LSVYAKCGCLDDAREVFEDMRERNLYTWSAMIGAYSRDQRWREVVELFFLMVQDGLFPDDFLFPKILQACGNCGDFEAGK 177 (868)
Q Consensus 98 i~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 177 (868)
+.+|+++|+++.|+++|++|++||+++||+||.+|++.|++++|+++|++|...|+.||.+||+++|++|+..+++..+.
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~ 207 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGR 207 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCcchHHHHHHHHHHcCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCccC
Q 047992 178 LMHSLVIKLGMSCVRRVRNSVLAVYVKCGKLIWARRFFESMDEKDGVAWNSMISGYFQIGENDEAHRLFDKMCREEIKLG 257 (868)
Q Consensus 178 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 257 (868)
++|..+++.|+.+|..++|+||++|+++|++++|.++|++|+.+|+++||+||.+|++.|++++|+++|++|.+.|+.||
T Consensus 208 ~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd 287 (857)
T PLN03077 208 EVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPD 287 (857)
T ss_pred HHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcccHHHHHHH
Q 047992 258 VVTFNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISA 337 (868)
Q Consensus 258 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a 337 (868)
..||+.++.+|++.|+.+.|.+++..|.+.|+.||..+||++|.+|++.|++++|.++|++|. .||..+|++++.+
T Consensus 288 ~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~ 363 (857)
T PLN03077 288 LMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISG 363 (857)
T ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999995 3666777666666
Q ss_pred HhchhhHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHcCCCHHHHHHHHHhcCCCCeehHHHHHHHHHhcCChhHHHHHH
Q 047992 338 CTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEELEAAERVFDMIKDKDVYSWNSMIAGYCQAGYCGKAYELF 417 (868)
Q Consensus 338 ~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~vf~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 417 (868)
|.+.|++++|.+++..|.+.|+.||. .+|++++.+|++.|++++|.+++
T Consensus 364 ~~~~g~~~~A~~lf~~M~~~g~~Pd~-------------------------------~t~~~ll~a~~~~g~~~~a~~l~ 412 (857)
T PLN03077 364 YEKNGLPDKALETYALMEQDNVSPDE-------------------------------ITIASVLSACACLGDLDVGVKLH 412 (857)
T ss_pred HHhCCCHHHHHHHHHHHHHhCCCCCc-------------------------------eeHHHHHHHHhccchHHHHHHHH
Confidence 66666666666666666666655555 45555555555666666667777
Q ss_pred HHhHhCCCCCCeeehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCC
Q 047992 418 IKMQESDVPPNVITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFY 497 (868)
Q Consensus 418 ~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 497 (868)
..|.+.|+.|+..+|++||++|+++|++++|.++|++|. .+|.++|++||.+|+++|+.++|+++|++|.. +++
T Consensus 413 ~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~-----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~ 486 (857)
T PLN03077 413 ELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP-----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLK 486 (857)
T ss_pred HHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC-----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCC
Confidence 788888999999999999999999999999999999995 47899999999999999999999999999986 699
Q ss_pred CCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCceecHHHHHHHH
Q 047992 498 PNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMSSKDIITWNSLICGYV 577 (868)
Q Consensus 498 p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~ 577 (868)
||.+||.++|.+|++.|+++.|+++|..+++.|+.+|..++|+|+++|+|||++++|.++|+.+ .+|+++||+||.+|+
T Consensus 487 pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~ 565 (857)
T PLN03077 487 PNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYV 565 (857)
T ss_pred CCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHH
Q 047992 578 LHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAM 657 (868)
Q Consensus 578 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~ 657 (868)
++|+.++|+++|++|.+.|++||.+||+++|.+|+|.|++++|+++|++|.+++|+.|+.+||+||||+|+|+|+++||+
T Consensus 566 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~ 645 (857)
T PLN03077 566 AHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAY 645 (857)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999988999999999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCC
Q 047992 658 EFIEDMPIEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLERENTRRNS 737 (868)
Q Consensus 658 ~~i~~~~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~ 737 (868)
+++++||++||..+|++|+++|+.|||++.|+.+++++++++|+++++|++|+|+|+..|+|++|.++|+.|+++|++|+
T Consensus 646 ~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~ 725 (857)
T PLN03077 646 NFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVD 725 (857)
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccEEEEcCEEEEEEeCCCCCCchHHHHHHHH-------hCCCccCCCCCCCCCCchhhhhhhhhhccchHHHHHHHhh
Q 047992 738 FGQCWIEVKNLVYTFVTGGWSESYSDLLYSWLQ-------NVPENVTARSSHSGLCIEEEEKEEISGIHSEKLALAFALI 810 (868)
Q Consensus 738 ~g~s~i~~~~~~~~f~~~d~~hp~~~~i~~~l~-------~~g~~~~~~~~~~~~~~~~~~~~~~~~~hse~la~~~~~~ 810 (868)
|||||||+++++|.|++||++||++++||.+|+ +.||+ ||++.++|+ +||+||..|++||||||||||||
T Consensus 726 ~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~--~~~~~~~~~-~~~~k~~~~~~hse~la~a~~l~ 802 (857)
T PLN03077 726 PGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLA--GSESSSMDE-IEVSKDDIFCGHSERLAIAFGLI 802 (857)
T ss_pred CCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcC--CCcchhccc-cHHHHHHHHHhccHHHHHHHhhh
Confidence 999999999999999999999999999999988 78999 999999954 88999999999999999999999
Q ss_pred cCCCCCCcEEEecccccCCcchhhhHHHHhhhceEEEEecCCcccccCCCccCCCC
Q 047992 811 GSSQAPHTIRIVKNIRMCVHCHETAKYVSMMHHCEIFLADSKCLHHFKNGQCSCGD 866 (868)
Q Consensus 811 ~~~~~~~~~~~~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 866 (868)
+||||+ ||||+||||||+|||+++||||||++|||||||++|||||+||+|||||
T Consensus 803 ~~~~~~-~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 803 NTVPGM-PIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred cCCCCC-eEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 999999 9999999999999999999999999999999999999999999999998
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-133 Score=1172.02 Aligned_cols=606 Identities=32% Similarity=0.546 Sum_probs=560.7
Q ss_pred CCCceeHHHHHHHHHhCCChhHHHHHHHHhHHCC-CCCCcchHHHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchHHH
Q 047992 119 ERNLYTWSAMIGAYSRDQRWREVVELFFLMVQDG-LFPDDFLFPKILQACGNCGDFEAGKLMHSLVIKLGMSCVRRVRNS 197 (868)
Q Consensus 119 ~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 197 (868)
.++..+|+++|.+|.+.|++++|+++|+.|...+ +.||..||+.++++|++.++++.+.++|..+.+.|+.||..++|.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4678899999999999999999999999998764 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCccChhhHHHHHHHHHhcCChHHH
Q 047992 198 VLAVYVKCGKLIWARRFFESMDEKDGVAWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQLGQCDVA 277 (868)
Q Consensus 198 li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 277 (868)
|+++|+++|+++.|.++|++|+++|.++||++|.+|++.|++++|+++|++|.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~-------------------------- 217 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWE-------------------------- 217 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHH--------------------------
Confidence 999999999999999999999999999999999999999999999999988886
Q ss_pred HHHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcccHHHHHHHHhchhhHHHHHHHHHHHHHh
Q 047992 278 MEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLAVKM 357 (868)
Q Consensus 278 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~ 357 (868)
.|+.||..||+.++.+|+..+..+.++++|..+.+.
T Consensus 218 --------------------------------------------~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~ 253 (697)
T PLN03081 218 --------------------------------------------DGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKT 253 (697)
T ss_pred --------------------------------------------hCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 566778888888888888888889999999999999
Q ss_pred CCCCCccHHHHHHHHHHcCCCHHHHHHHHHhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCeeehhhHHH
Q 047992 358 GFTDDVLVGNSLINMYSKCEELEAAERVFDMIKDKDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNVLIS 437 (868)
Q Consensus 358 g~~~~~~~~~~li~~y~~~g~~~~A~~vf~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~ 437 (868)
|+.+|..++|+|+++|+++|++++|.++|+.|.++|+++||+||.+|++.|+.++|+++|++|
T Consensus 254 g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M----------------- 316 (697)
T PLN03081 254 GVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEM----------------- 316 (697)
T ss_pred CCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHH-----------------
Confidence 999999999999999999999999999888887665555544444444444444444444444
Q ss_pred HHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchH
Q 047992 438 GYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASN 517 (868)
Q Consensus 438 ~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 517 (868)
...|+.||..||++++++|++.|.++
T Consensus 317 ------------------------------------------------------~~~g~~pd~~t~~~ll~a~~~~g~~~ 342 (697)
T PLN03081 317 ------------------------------------------------------RDSGVSIDQFTFSIMIRIFSRLALLE 342 (697)
T ss_pred ------------------------------------------------------HHcCCCCCHHHHHHHHHHHHhccchH
Confidence 44456666666666777777777777
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 047992 518 KVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMSSKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGL 597 (868)
Q Consensus 518 ~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 597 (868)
.|+++|..+.+.|+.+|..++++|+++|+|||++++|.++|++|.++|+++||+||.+|+++|+.++|+++|++|.+.|+
T Consensus 343 ~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~ 422 (697)
T PLN03081 343 HAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGV 422 (697)
T ss_pred HHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 77777777777888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhCCCCCCHHHHHHHHH
Q 047992 598 KPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPIEPDSSIWEALLT 677 (868)
Q Consensus 598 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~~~~p~~~~w~~ll~ 677 (868)
+||.+||++++++|++.|++++|+++|+.|.+++|+.|+..||+|||++|+|+|+++||.+++++||++|+..+|++|++
T Consensus 423 ~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~ 502 (697)
T PLN03081 423 APNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLT 502 (697)
T ss_pred CCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCCCcccEEEEcCEEEEEEeCCC
Q 047992 678 ACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLERENTRRNSFGQCWIEVKNLVYTFVTGGW 757 (868)
Q Consensus 678 a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~g~s~i~~~~~~~~f~~~d~ 757 (868)
+|+.+|+++.|+.+++++++++|++.+.|+.|+|+|++.|+|++|.++++.|+++|++|.|||||||+++++|.|++||+
T Consensus 503 a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~ 582 (697)
T PLN03081 503 ACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDR 582 (697)
T ss_pred HHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHH-------hCCCccCCCCCCCCCCchhhhhhhhhhccchHHHHHHHhhcCCCCCCcEEEecccccCCc
Q 047992 758 SESYSDLLYSWLQ-------NVPENVTARSSHSGLCIEEEEKEEISGIHSEKLALAFALIGSSQAPHTIRIVKNIRMCVH 830 (868)
Q Consensus 758 ~hp~~~~i~~~l~-------~~g~~~~~~~~~~~~~~~~~~~~~~~~~hse~la~~~~~~~~~~~~~~~~~~knlr~c~d 830 (868)
+||++++||.+|+ +.||+ ||+++++||++|++||+.|++||||||||||||+||||+ ||||+||||||+|
T Consensus 583 ~h~~~~~i~~~l~~l~~~~~~~gy~--~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~~~~~-~i~i~knlr~c~d 659 (697)
T PLN03081 583 LHPQSREIYQKLDELMKEISEYGYV--AEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWT-PLQITQSHRICKD 659 (697)
T ss_pred CCccHHHHHHHHHHHHHHHHHcCCC--CCcchhhccccHHHHHHHHHhccHHHHHHhhCccCCCCC-eEEEecCCEECCC
Confidence 9999999999888 78999 999999999999999999999999999999999999999 9999999999999
Q ss_pred chhhhHHHHhhhceEEEEecCCcccccCCCccCCCCCC
Q 047992 831 CHETAKYVSMMHHCEIFLADSKCLHHFKNGQCSCGDYW 868 (868)
Q Consensus 831 ch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 868 (868)
||+|+|||||++||||||||++|||||+||+|||||||
T Consensus 660 ch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 660 CHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred chhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 99999999999999999999999999999999999999
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-77 Score=715.57 Aligned_cols=690 Identities=21% Similarity=0.291 Sum_probs=590.2
Q ss_pred HHhhHHHHhccCCCCc--chHHHHHHHHhCCChhHHHHHHHHHhhcCCCCCcccHHHHHHHHhccCChHHHHHHHHHh-h
Q 047992 8 TFQQLHSLLTKKSNPR--FRDTHLDFLCGNGRLNEAITVLDSIATQGAKVRRNTYINLLQACIDSNSIHLARKLHAFL-N 84 (868)
Q Consensus 8 ~~~~~~~~~~~~~~~~--~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~i~~~~-~ 84 (868)
.+..+.++|...+.|+ .|+.++.+|++.|++++|+.+|++|...|+.|+..||..++++|+..+++..++++|..+ +
T Consensus 136 ~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~ 215 (857)
T PLN03077 136 ELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVR 215 (857)
T ss_pred ChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHH
Confidence 4566788888888777 799999999999999999999999999999999999999999999999999999999999 9
Q ss_pred hcCCCChhhhhHHHHHHHhcCChhHHHHHHhhcCCCCceeHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHH
Q 047992 85 LVTEIDVFVKTKLLSVYAKCGCLDDAREVFEDMRERNLYTWSAMIGAYSRDQRWREVVELFFLMVQDGLFPDDFLFPKIL 164 (868)
Q Consensus 85 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll 164 (868)
.|+.+|+.++|.||.+|+++|++++|+++|++|+.||+++||+||.+|++.|++++|+++|.+|.+.|+.||..||+++|
T Consensus 216 ~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll 295 (857)
T PLN03077 216 FGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVI 295 (857)
T ss_pred cCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHcCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHH
Q 047992 165 QACGNCGDFEAGKLMHSLVIKLGMSCVRRVRNSVLAVYVKCGKLIWARRFFESMDEKDGVAWNSMISGYFQIGENDEAHR 244 (868)
Q Consensus 165 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~ 244 (868)
++|++.|+++.|+++|..+.+.|+.||..++|+|+.+|+++|++++|.++|++|+.+|.++||+||.+|++.|++++|++
T Consensus 296 ~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~ 375 (857)
T PLN03077 296 SACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALE 375 (857)
T ss_pred HHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCccChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCc
Q 047992 245 LFDKMCREEIKLGVVTFNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGV 324 (868)
Q Consensus 245 l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 324 (868)
+|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|+.|+..+||+||.+|++.|++++|.++|++|.+
T Consensus 376 lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--- 452 (857)
T PLN03077 376 TYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE--- 452 (857)
T ss_pred HHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999852
Q ss_pred cCCcccHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHcCCCHHHHHHHHHhcC---CCCeehHHHHH
Q 047992 325 MPNGVTITSAISACTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEELEAAERVFDMIK---DKDVYSWNSMI 401 (868)
Q Consensus 325 ~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~vf~~~~---~~~~~~~~~li 401 (868)
+|.. +||++|.+|++.|+.++|..+|++|. .||.++|++++
T Consensus 453 -~d~v-----------------------------------s~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL 496 (857)
T PLN03077 453 -KDVI-----------------------------------SWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAAL 496 (857)
T ss_pred -CCee-----------------------------------eHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHH
Confidence 4444 45555556666666666666666664 36777777888
Q ss_pred HHHHhcCChhHHHHHHHHhHhCCCCCCeeehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCCh
Q 047992 402 AGYCQAGYCGKAYELFIKMQESDVPPNVITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQK 481 (868)
Q Consensus 402 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~ 481 (868)
.+|++.|..+.+.+++..|.+.|+.+|..++|+||++|+++|++++|.++|+.+ .+|..+||+||.+|++.|+.
T Consensus 497 ~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~------~~d~~s~n~lI~~~~~~G~~ 570 (857)
T PLN03077 497 SACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH------EKDVVSWNILLTGYVAHGKG 570 (857)
T ss_pred HHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc------CCChhhHHHHHHHHHHcCCH
Confidence 888888888888888999999999999999999999999999999999999998 58999999999999999999
Q ss_pred hHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHH-HhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhc
Q 047992 482 NNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVL-RRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDG 560 (868)
Q Consensus 482 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~ 560 (868)
++|+++|++|.+.|+.||.+||.++|.+|++.|.+++|.+++..+. +.|+.|+..+|+.++++|+++|++++|.+++++
T Consensus 571 ~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~ 650 (857)
T PLN03077 571 SMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINK 650 (857)
T ss_pred HHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998 689999999999999999999999999999999
Q ss_pred CC-CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChh
Q 047992 561 MS-SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIE 638 (868)
Q Consensus 561 ~~-~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~ 638 (868)
|+ +||..+|++|+.+|..||+.+.|....+++.+ +.|+. .+|..+.+.|...|+++++.++.+.|++. |+.+++.
T Consensus 651 m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~--l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~-g~~k~~g 727 (857)
T PLN03077 651 MPITPDPAVWGALLNACRIHRHVELGELAAQHIFE--LDPNSVGYYILLCNLYADAGKWDEVARVRKTMREN-GLTVDPG 727 (857)
T ss_pred CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--hCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHc-CCCCCCC
Confidence 96 79999999999999999999999999999988 78876 55666667899999999999999999884 7776543
Q ss_pred HHHHHH----HhhhhcC------------ChHHHHHHHHhCCCCCCHHHHHHHH-----HHHHhcCCHHHHHHHHHHHhc
Q 047992 639 HYSAMI----DLYGRSG------------KLEEAMEFIEDMPIEPDSSIWEALL-----TACRIHGNIDLAVLAIERLFD 697 (868)
Q Consensus 639 ~y~~lv----d~l~r~g------------~~~eA~~~i~~~~~~p~~~~w~~ll-----~a~~~~~~~~~a~~~~~~~~~ 697 (868)
....-+ ..+. +| .+++-..-+++....||...-...- .....| --.+| ++--++.
T Consensus 728 ~s~ie~~~~~~~f~-~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~k~~~~~~h-se~la--~a~~l~~ 803 (857)
T PLN03077 728 CSWVEVKGKVHAFL-TDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSMDEIEVSKDDIFCGH-SERLA--IAFGLIN 803 (857)
T ss_pred ccEEEECCEEEEEe-cCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhccccHHHHHHHHHhc-cHHHH--HHHhhhc
Confidence 211000 0000 01 1122222223335667643100000 000001 00111 1112333
Q ss_pred cCCCCchhHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCCCcccEEEEcCEEEEEEeCCCCC
Q 047992 698 LEPGDVLIQRLILQIYAICGKPEDALKVRKLERENTRRNSFGQCWIEVKNLVYTFVTGGWSE 759 (868)
Q Consensus 698 l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~g~s~i~~~~~~~~f~~~d~~h 759 (868)
..|..+ +....-+--+|+...|.++......|.|- |.-.++.|.|..|-.|.
T Consensus 804 ~~~~~~---i~i~knlr~c~dch~~~k~~s~~~~r~i~-------~rd~~rfh~f~~g~csc 855 (857)
T PLN03077 804 TVPGMP---IWVTKNLYMCENCHNTVKFISKIVRREIS-------VRDTEQFHHFKDGECSC 855 (857)
T ss_pred CCCCCe---EEEeCCCEeCccHHHHHHHHHHHhCeEEE-------EecCCcceeCCCCcccC
Confidence 434321 22223345688899999988887766543 45567899998887664
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-67 Score=619.56 Aligned_cols=533 Identities=18% Similarity=0.261 Sum_probs=430.4
Q ss_pred CCCChhhhhHHHHHHHhcCChhHHHHHHhhcCCCCceeH-----HHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHH
Q 047992 87 TEIDVFVKTKLLSVYAKCGCLDDAREVFEDMRERNLYTW-----SAMIGAYSRDQRWREVVELFFLMVQDGLFPDDFLFP 161 (868)
Q Consensus 87 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~-----~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~ 161 (868)
..++...+..++..|+++|++++|.++|+.|++++.+.| +.++.+|.+.|..++|+.+|+.|.. ||..+|+
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn 441 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFN 441 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHH
Confidence 345667788888888899999999999999988776654 4566678899999999999998864 8999999
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHcCChHHHHHHHhhcC----CCChhhHHHHHHHHHhcC
Q 047992 162 KILQACGNCGDFEAGKLMHSLVIKLGMSCVRRVRNSVLAVYVKCGKLIWARRFFESMD----EKDGVAWNSMISGYFQIG 237 (868)
Q Consensus 162 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~----~~d~~~~~~li~~~~~~g 237 (868)
.+|++|++.|+++.|.++|+.|.+.|+.||..+||+||.+|+++|+++.|.++|++|. .+|.++||+||.+|++.|
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 9999999999999999999999999999999998888888888888888888888876 357778888888888888
Q ss_pred ChhHHHHHHHHHHHcCCccChhhHHHHHHHHHhcCChHHHHHHHHHHHh--cCCCCCeeeHHHHHHHHHhcCChhHHHHH
Q 047992 238 ENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQLGQCDVAMEMVKRMES--LGITPDVFTWTCMISGFAQNGRTSQALDL 315 (868)
Q Consensus 238 ~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~~~~~li~~~~~~g~~~~A~~l 315 (868)
++++|+++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.. .|+.||..+|+++|.+|++.|++++|.++
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~el 601 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV 601 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 8888888888888888888888888888888888888888888888765 56777777777777777777777777777
Q ss_pred HHHHHhCCccCCcccHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHcCCCHHHHHHHHHhcCCCCee
Q 047992 316 FKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEELEAAERVFDMIKDKDVY 395 (868)
Q Consensus 316 ~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~vf~~~~~~~~~ 395 (868)
|++|.+.|+.|+..+|+.++.+|++.|+++.|..++..|.+.|+.||..+|+++
T Consensus 602 f~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsL-------------------------- 655 (1060)
T PLN03218 602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSAL-------------------------- 655 (1060)
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH--------------------------
Confidence 777777777777777666666666666666666666666666666555555555
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCeeehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHH
Q 047992 396 SWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGY 475 (868)
Q Consensus 396 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~ 475 (868)
|.+|++.|++++|.++|++|.+.|++||..+|++||.+|+++|++++|.++|++|.+.+ +.||..+|++||.+|
T Consensus 656 -----I~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g-~~PdvvtyN~LI~gy 729 (1060)
T PLN03218 656 -----VDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIK-LRPTVSTMNALITAL 729 (1060)
T ss_pred -----HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHH
Confidence 45555555566666677777888889999999999999999999999999999997654 788999999999999
Q ss_pred HhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHH----HHhcCCH
Q 047992 476 QQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDT----YAKSGNI 551 (868)
Q Consensus 476 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~----y~k~g~~ 551 (868)
++.|++++|+++|++|...|+.||..||.+++.+|++.|.++.|.++|..+.+.|+.||..+|++|+++ |.+|+++
T Consensus 730 ~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l 809 (1060)
T PLN03218 730 CEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACAL 809 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999987 5677777
Q ss_pred HHHHHHHhcCCCCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhc
Q 047992 552 VYSRTIFDGMSSKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECY 631 (868)
Q Consensus 552 ~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 631 (868)
.++...|+.+...+...|+. +|+.+|++|++.|+.||.+||..+|.++...+.++.+..+++.|.. -
T Consensus 810 ~~~v~~f~~g~~~~~n~w~~------------~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~-~ 876 (1060)
T PLN03218 810 GEPVVSFDSGRPQIENKWTS------------WALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGI-S 876 (1060)
T ss_pred hhhhhhhhccccccccchHH------------HHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhcc-C
Confidence 77777777666666666764 5999999999999999999999999655566666555555554433 2
Q ss_pred CCCCChhHHHHHHHhhhhcCChHHHHHHHHhC---CCCCCHH
Q 047992 632 QIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM---PIEPDSS 670 (868)
Q Consensus 632 ~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~---~~~p~~~ 670 (868)
+..|+..+|+++++.+++. .++|..++++| .+.|+..
T Consensus 877 ~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 877 ADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred CCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 4555677899999988542 47899999998 5666654
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-67 Score=619.21 Aligned_cols=503 Identities=28% Similarity=0.451 Sum_probs=454.8
Q ss_pred chHHHHHHHHhCCChhHHHHHHHHHhhcC-CCCCcccHHHHHHHHhccCChHHHHHHHHHh-hhcCCCChhhhhHHHHHH
Q 047992 24 FRDTHLDFLCGNGRLNEAITVLDSIATQG-AKVRRNTYINLLQACIDSNSIHLARKLHAFL-NLVTEIDVFVKTKLLSVY 101 (868)
Q Consensus 24 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~i~~~~-~~~~~~~~~~~~~li~~~ 101 (868)
.|++++..+.+.|++.+|+.+|+.|...+ ..|+..+|..++.+|.+.++++.+.++|..+ +.|+.||..++|.|+++|
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y 168 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMH 168 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 68999999999999999999999998764 6789999999999999999999999999999 999999999999999999
Q ss_pred HhcCChhHHHHHHhhcCCCCceeHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHhhCCCChHHHHHHHH
Q 047992 102 AKCGCLDDAREVFEDMRERNLYTWSAMIGAYSRDQRWREVVELFFLMVQDGLFPDDFLFPKILQACGNCGDFEAGKLMHS 181 (868)
Q Consensus 102 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 181 (868)
+++|+++.|+++|++|++||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++++|+..|..+.++++|.
T Consensus 169 ~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~ 248 (697)
T PLN03081 169 VKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHC 248 (697)
T ss_pred hcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCcchHHHHHHHHHHcCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCccChhhH
Q 047992 182 LVIKLGMSCVRRVRNSVLAVYVKCGKLIWARRFFESMDEKDGVAWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTF 261 (868)
Q Consensus 182 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~ 261 (868)
.+.+.|+.+|..++|+||++|+++|++++|.++|++|+++|+++||+||.+|++.|++++|+++|++|.+
T Consensus 249 ~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~---------- 318 (697)
T PLN03081 249 CVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRD---------- 318 (697)
T ss_pred HHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHH----------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcccHHHHHHHHhch
Q 047992 262 NILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISACTDL 341 (868)
Q Consensus 262 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~ 341 (868)
.|+.||..||++++.+|++.
T Consensus 319 ------------------------------------------------------------~g~~pd~~t~~~ll~a~~~~ 338 (697)
T PLN03081 319 ------------------------------------------------------------SGVSIDQFTFSIMIRIFSRL 338 (697)
T ss_pred ------------------------------------------------------------cCCCCCHHHHHHHHHHHHhc
Confidence 45556666666777777777
Q ss_pred hhHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHcCCCHHHHHHHHHhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHhH
Q 047992 342 KALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEELEAAERVFDMIKDKDVYSWNSMIAGYCQAGYCGKAYELFIKMQ 421 (868)
Q Consensus 342 ~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~vf~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 421 (868)
|.++.|+++|..+.+.|+.+|..++|+|+++|+++|++++|.++|+.|.++|+++||+||.+|+++|+.++|+++|++|.
T Consensus 339 g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~ 418 (697)
T PLN03081 339 ALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMI 418 (697)
T ss_pred cchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77777777777888888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCCeeehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHH
Q 047992 422 ESDVPPNVITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCV 501 (868)
Q Consensus 422 ~~g~~p~~~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 501 (868)
+.|+.||.+||++++.+|.+.|.+++|.++|+.|.+..++.|+..+|+.|+++|++.|+.++|.+++++| ++.|+..
T Consensus 419 ~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~ 495 (697)
T PLN03081 419 AEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVN 495 (697)
T ss_pred HhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHH
Confidence 9999999999999999999999999999999999988889999999999999999999999999999987 5889999
Q ss_pred hHHHHHHHHhchhchHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC-----ceecHHH---
Q 047992 502 TILSVLPACAYLVASNKVKEIHGCVLRRSLES-SLPVMNSLIDTYAKSGNIVYSRTIFDGMSSKD-----IITWNSL--- 572 (868)
Q Consensus 502 t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~d-----~~~~~~l--- 572 (868)
+|.+++.+|...|+++.|+.+...+.+ +.| +...|+.|+++|++.|++++|.++++.|.++. ..+|..+
T Consensus 496 ~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~ 573 (697)
T PLN03081 496 MWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQ 573 (697)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCe
Confidence 999999999999999999999888865 555 46688888888888888888888888887543 3455332
Q ss_pred ----HHHHHhcCC----hHHHHHHHHHHHHCCCCCCH
Q 047992 573 ----ICGYVLHGF----WHAALDLFDQMKSFGLKPNR 601 (868)
Q Consensus 573 ----i~~~~~~g~----~~~A~~l~~~m~~~g~~p~~ 601 (868)
+.+...|.+ ++...++..+|.+.|..||.
T Consensus 574 ~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~ 610 (697)
T PLN03081 574 DHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEE 610 (697)
T ss_pred EEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 222222222 23445667777777777774
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-64 Score=592.80 Aligned_cols=532 Identities=18% Similarity=0.246 Sum_probs=471.4
Q ss_pred CCCcccHHHHHHHHhccCChHHHHHHHHHh-hhcC-CCChhhhhHHHHHHHhcCChhHHHHHHhhcCCCCceeHHHHHHH
Q 047992 54 KVRRNTYINLLQACIDSNSIHLARKLHAFL-NLVT-EIDVFVKTKLLSVYAKCGCLDDAREVFEDMRERNLYTWSAMIGA 131 (868)
Q Consensus 54 ~~~~~~~~~ll~~~~~~~~~~~a~~i~~~~-~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~ 131 (868)
.++...|..++..|++.|++..|.++++.| ..+. .++...++.++..|.+.|.+++|..+|+.|+.||..+||.+|.+
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a 446 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSV 446 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 456677889999999999999999999999 7774 56777888999999999999999999999999999999999999
Q ss_pred HHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHcCChHHH
Q 047992 132 YSRDQRWREVVELFFLMVQDGLFPDDFLFPKILQACGNCGDFEAGKLMHSLVIKLGMSCVRRVRNSVLAVYVKCGKLIWA 211 (868)
Q Consensus 132 ~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 211 (868)
|++.|++++|.++|+.|.+.|+.||..+|+++|.+|++.|+++.|.++++.|.+.|+.||..+|+.||.+|++.|++++|
T Consensus 447 ~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeA 526 (1060)
T PLN03218 447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA 526 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCC----CChhhHHHHHHHHHhcCChhHHHHHHHHHHH--cCCccChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 047992 212 RRFFESMDE----KDGVAWNSMISGYFQIGENDEAHRLFDKMCR--EEIKLGVVTFNILIRSYNQLGQCDVAMEMVKRME 285 (868)
Q Consensus 212 ~~~f~~~~~----~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~--~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 285 (868)
.++|++|.. ||.++||.||.+|++.|++++|.++|++|.. .|+.||..+|++||.+|++.|++++|.++|+.|.
T Consensus 527 l~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~ 606 (1060)
T PLN03218 527 FGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIH 606 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999964 6999999999999999999999999999986 6899999999999999999999999999999999
Q ss_pred hcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcccHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCCccH
Q 047992 286 SLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLAVKMGFTDDVLV 365 (868)
Q Consensus 286 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~ 365 (868)
+.|+.|+..+||++|.+|++.|++++|+++|++|...|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.|+..+
T Consensus 607 e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~t 686 (1060)
T PLN03218 607 EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVS 686 (1060)
T ss_pred HcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhcC----CCCeehHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCeeehhhHHHHHHh
Q 047992 366 GNSLINMYSKCEELEAAERVFDMIK----DKDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNVLISGYIQ 441 (868)
Q Consensus 366 ~~~li~~y~~~g~~~~A~~vf~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~ 441 (868)
|++||.+|+++|++++|.++|+.|. .||+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++
T Consensus 687 ynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k 766 (1060)
T PLN03218 687 YSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASER 766 (1060)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999995 579999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcC--CCCCCHHhHHHHHHHHhchhchHHH
Q 047992 442 NGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSS--CFYPNCVTILSVLPACAYLVASNKV 519 (868)
Q Consensus 442 ~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~a~~~~~~~~~~ 519 (868)
.|++++|.++|+.|.+.+ +.||..+|++++..|.+ ++++|..+.+.+..- +...+.. +-.+.|
T Consensus 767 ~G~le~A~~l~~~M~k~G-i~pd~~tynsLIglc~~--~y~ka~~l~~~v~~f~~g~~~~~n------------~w~~~A 831 (1060)
T PLN03218 767 KDDADVGLDLLSQAKEDG-IKPNLVMCRCITGLCLR--RFEKACALGEPVVSFDSGRPQIEN------------KWTSWA 831 (1060)
T ss_pred CCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHH--HHHHHhhhhhhhhhhhcccccccc------------chHHHH
Confidence 999999999999997665 78888888888865432 355555444333211 1111111 122457
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC----CCCceecHHHHHHHHhcCChHHHHHHHHHHHHC
Q 047992 520 KEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMS----SKDIITWNSLICGYVLHGFWHAALDLFDQMKSF 595 (868)
Q Consensus 520 ~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~----~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 595 (868)
..++..|++.|+.||..+++.++.++.+.+..+.+..+++.|. .++..+||++|.++.+. .++|+.+|++|.+.
T Consensus 832 l~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~ 909 (1060)
T PLN03218 832 LMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASL 909 (1060)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHc
Confidence 7777777777777777777777777777777888888887664 35667888888877432 35788888888888
Q ss_pred CCCCCHH
Q 047992 596 GLKPNRG 602 (868)
Q Consensus 596 g~~p~~~ 602 (868)
|+.|+..
T Consensus 910 Gi~p~~~ 916 (1060)
T PLN03218 910 GVVPSVS 916 (1060)
T ss_pred CCCCCcc
Confidence 8888764
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-37 Score=380.58 Aligned_cols=692 Identities=13% Similarity=0.090 Sum_probs=522.3
Q ss_pred chHHHHHHHHhCCChhHHHHHHHHHhhcCCCCCcccHHHHHHHHhccCChHHHHHHHHHhhhcCCCChhhhhHHHHHHHh
Q 047992 24 FRDTHLDFLCGNGRLNEAITVLDSIATQGAKVRRNTYINLLQACIDSNSIHLARKLHAFLNLVTEIDVFVKTKLLSVYAK 103 (868)
Q Consensus 24 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~li~~~~~ 103 (868)
.+..+...+...|++++|.+.++++.... +.+...+..+...+...|+.+.|...+..+....+.++.++..++..+..
T Consensus 161 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~ 239 (899)
T TIGR02917 161 AKLGLAQLALAENRFDEARALIDEVLTAD-PGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIE 239 (899)
T ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 45555555666666666666666555432 22333444444445555666666666665511223445555566666666
Q ss_pred cCChhHHHHHHhhcCC--C-CceeHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcc-hHHHHHHHhhCCCChHHHHHH
Q 047992 104 CGCLDDAREVFEDMRE--R-NLYTWSAMIGAYSRDQRWREVVELFFLMVQDGLFPDDF-LFPKILQACGNCGDFEAGKLM 179 (868)
Q Consensus 104 ~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~ 179 (868)
.|+++.|...|+.+.+ | +...+......+...|++++|+..|+++.+.+ |+.. .+..+...+...|+++.|...
T Consensus 240 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~ 317 (899)
T TIGR02917 240 AGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSA--PEYLPALLLAGASEYQLGNLEQAYQY 317 (899)
T ss_pred cCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHcCCHHHHHHH
Confidence 6666666666665532 1 11222222233445666777777776665532 3322 222333445667888888888
Q ss_pred HHHHHHhCCCCCcchHHHHHHHHHHcCChHHHHHHHhhcCCC---ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcc
Q 047992 180 HSLVIKLGMSCVRRVRNSVLAVYVKCGKLIWARRFFESMDEK---DGVAWNSMISGYFQIGENDEAHRLFDKMCREEIKL 256 (868)
Q Consensus 180 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 256 (868)
+..+++.. +.+......+...+.+.|++++|...++.+... +...|+.+...+.+.|++++|.++|+++.+.. +.
T Consensus 318 ~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~ 395 (899)
T TIGR02917 318 LNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PE 395 (899)
T ss_pred HHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CC
Confidence 88877765 345566677788888888888888888876543 56678888888888999999999998887653 23
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcccHHHHHH
Q 047992 257 GVVTFNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAIS 336 (868)
Q Consensus 257 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 336 (868)
+...+..+...+...|+.++|.+.|+.+.+..+. +...+..++..+.+.|++++|+++++++.. ..+++..++..+..
T Consensus 396 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~l~~ 473 (899)
T TIGR02917 396 NAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEK-KQPDNASLHNLLGA 473 (899)
T ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHH-hCCCCcHHHHHHHH
Confidence 5567777888888889999999998888776544 345666778888899999999999988874 34556778888888
Q ss_pred HHhchhhHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHcCCCHHHHHHHHHhcCC---CCeehHHHHHHHHHhcCChhHH
Q 047992 337 ACTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEELEAAERVFDMIKD---KDVYSWNSMIAGYCQAGYCGKA 413 (868)
Q Consensus 337 a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~vf~~~~~---~~~~~~~~li~~~~~~g~~~~A 413 (868)
.+...|+++.|.+.+..+++.. +.+...+..+...|...|++++|.+.|+.+.. .+..++..+...+.+.|+.++|
T Consensus 474 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 552 (899)
T TIGR02917 474 IYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEA 552 (899)
T ss_pred HHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHH
Confidence 8999999999999999888764 34556777888899999999999999988764 3566788888999999999999
Q ss_pred HHHHHHhHhCCCCCCeeehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhc
Q 047992 414 YELFIKMQESDVPPNVITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQS 493 (868)
Q Consensus 414 ~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 493 (868)
...|.++...+ +.+...+..+...|.+.|++++|..+++.+.+.. +.+...|..+...|.+.|++++|...|+++..
T Consensus 553 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 629 (899)
T TIGR02917 553 VAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA--PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLA 629 (899)
T ss_pred HHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999988765 4456677888899999999999999999987654 56778899999999999999999999999875
Q ss_pred CCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCceecH
Q 047992 494 SCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMSS---KDIITWN 570 (868)
Q Consensus 494 ~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~d~~~~~ 570 (868)
.. +.+...+..+...+...|+.+.+...+..+++. .+.+...+..++..+.+.|++++|.++++.+.. .+...|.
T Consensus 630 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 707 (899)
T TIGR02917 630 LQ-PDSALALLLLADAYAVMKNYAKAITSLKRALEL-KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFE 707 (899)
T ss_pred hC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHH
Confidence 42 234556677777888899999999999888873 233677888999999999999999999998763 4566788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhc
Q 047992 571 SLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRS 650 (868)
Q Consensus 571 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~ 650 (868)
.+...+...|++++|++.|+++.. ..|+..++..+..++.+.|+.++|.+.++.+.+. .+.+...+..+.++|.+.
T Consensus 708 ~~~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~ 783 (899)
T TIGR02917 708 LEGDLYLRQKDYPAAIQAYRKALK--RAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQ 783 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHC
Confidence 888899999999999999999988 4566677888888999999999999999988874 344567788899999999
Q ss_pred CChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHH
Q 047992 651 GKLEEAMEFIEDM-P-IEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKL 728 (868)
Q Consensus 651 g~~~eA~~~i~~~-~-~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 728 (868)
|+.++|.+.++++ . .++++.++..+...+...|+ +.|...+++++++.|+++..+..++.+|...|++++|.+..+.
T Consensus 784 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 862 (899)
T TIGR02917 784 KDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRK 862 (899)
T ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999987 2 33466789999999999999 7799999999999999999999999999999999999998887
Q ss_pred HHhcC
Q 047992 729 ERENT 733 (868)
Q Consensus 729 m~~~~ 733 (868)
+.+.+
T Consensus 863 a~~~~ 867 (899)
T TIGR02917 863 AVNIA 867 (899)
T ss_pred HHhhC
Confidence 76554
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-37 Score=376.05 Aligned_cols=692 Identities=12% Similarity=0.068 Sum_probs=582.1
Q ss_pred CCcchHHHHHHHHhCCChhHHHHHHHHHhhcCCCCCcccHHHHHHHHhccCChHHHHHHHHHh-hhcCCCChhhhhHHHH
Q 047992 21 NPRFRDTHLDFLCGNGRLNEAITVLDSIATQGAKVRRNTYINLLQACIDSNSIHLARKLHAFL-NLVTEIDVFVKTKLLS 99 (868)
Q Consensus 21 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~i~~~~-~~~~~~~~~~~~~li~ 99 (868)
++..+..+...+...|++++|...|++...... .+...+..+...+...|+++.|...+..+ ... +.+.........
T Consensus 192 ~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 269 (899)
T TIGR02917 192 NVDALLLKGDLLLSLGNIELALAAYRKAIALRP-NNPAVLLALATILIEAGEFEEAEKHADALLKKA-PNSPLAHYLKAL 269 (899)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHH
Confidence 334678888899999999999999999987653 35566777777888899999999999988 443 334445555556
Q ss_pred HHHhcCChhHHHHHHhhcCCCC---ceeHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHhhCCCChHHH
Q 047992 100 VYAKCGCLDDAREVFEDMRERN---LYTWSAMIGAYSRDQRWREVVELFFLMVQDGLFPDDFLFPKILQACGNCGDFEAG 176 (868)
Q Consensus 100 ~~~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 176 (868)
.+...|+++.|...|+.+.+.+ ...+..+...+...|++++|...|+.+.... +.+...+..+...+...|+++.|
T Consensus 270 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A 348 (899)
T TIGR02917 270 VDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEA 348 (899)
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHH
Confidence 6778899999999999875432 2234455567788999999999999988752 33445667777888899999999
Q ss_pred HHHHHHHHHhCCCCCcchHHHHHHHHHHcCChHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 047992 177 KLMHSLVIKLGMSCVRRVRNSVLAVYVKCGKLIWARRFFESMDE---KDGVAWNSMISGYFQIGENDEAHRLFDKMCREE 253 (868)
Q Consensus 177 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 253 (868)
...+..+.+.. +.+..+++.+...|.+.|++++|...|+++.. .+...|..+...+...|++++|.+.|+.+....
T Consensus 349 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 427 (899)
T TIGR02917 349 IATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLD 427 (899)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC
Confidence 99999988765 35677888999999999999999999998754 356678889999999999999999999998765
Q ss_pred CccChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcccHHH
Q 047992 254 IKLGVVTFNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITS 333 (868)
Q Consensus 254 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ 333 (868)
.. .......++..|.+.|+.++|.++++.+....+ ++..+|+.+...+...|++++|.+.|+++.... +.+...+..
T Consensus 428 ~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 504 (899)
T TIGR02917 428 PE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQP-DNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAAN 504 (899)
T ss_pred Cc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHH
Confidence 32 334566788899999999999999999987643 477899999999999999999999999997532 334456677
Q ss_pred HHHHHhchhhHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHcCCCHHHHHHHHHhcCC---CCeehHHHHHHHHHhcCCh
Q 047992 334 AISACTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEELEAAERVFDMIKD---KDVYSWNSMIAGYCQAGYC 410 (868)
Q Consensus 334 ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~vf~~~~~---~~~~~~~~li~~~~~~g~~ 410 (868)
+...+...|+++.+.+.+..+++.. +.+..++..+...|.+.|+.++|...|+.+.. .+...+..++..|.+.|++
T Consensus 505 la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 583 (899)
T TIGR02917 505 LARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQL 583 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCH
Confidence 7788889999999999999998875 44677889999999999999999999998854 3556788899999999999
Q ss_pred hHHHHHHHHhHhCCCCCCeeehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHH
Q 047992 411 GKAYELFIKMQESDVPPNVITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRK 490 (868)
Q Consensus 411 ~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 490 (868)
++|..+++++.+.. +.+..+|..+...|.+.|++++|...|+.+.+.. +.+...|..+...+.+.|++++|...|++
T Consensus 584 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 660 (899)
T TIGR02917 584 KKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ--PDSALALLLLADAYAVMKNYAKAITSLKR 660 (899)
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999998754 4567789999999999999999999999997754 55677899999999999999999999999
Q ss_pred hhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC--CCCcee
Q 047992 491 MQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMS--SKDIIT 568 (868)
Q Consensus 491 m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~--~~d~~~ 568 (868)
+... .+.+..++..+...+...|+.+.+..++..+.+.. +.+...+..+...|.+.|++++|.+.|+++. .|+..+
T Consensus 661 ~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 738 (899)
T TIGR02917 661 ALEL-KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQN 738 (899)
T ss_pred HHhc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchH
Confidence 8863 23346778888888999999999999999988754 4467788889999999999999999999875 355577
Q ss_pred cHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhh
Q 047992 569 WNSLICGYVLHGFWHAALDLFDQMKSFGLKP-NRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLY 647 (868)
Q Consensus 569 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l 647 (868)
+..++..+...|+.++|++.++++.+. .| +...+..+...|...|+.++|..+|+.+.+. .+++...+..+..++
T Consensus 739 ~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~ 814 (899)
T TIGR02917 739 AIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK--APDNAVVLNNLAWLY 814 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 888999999999999999999999984 44 4577888888899999999999999999874 345677899999999
Q ss_pred hhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHH
Q 047992 648 GRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKV 725 (868)
Q Consensus 648 ~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~ 725 (868)
...|+ ++|+++++++ ...| ++.+|..+..++...|+++.|...++++++++|.++..+..++.+|...|++++|.++
T Consensus 815 ~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 893 (899)
T TIGR02917 815 LELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKE 893 (899)
T ss_pred HhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999 8899999987 4444 4558888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH
Q 047992 726 RKLER 730 (868)
Q Consensus 726 ~~~m~ 730 (868)
.+.|.
T Consensus 894 ~~~~~ 898 (899)
T TIGR02917 894 LDKLL 898 (899)
T ss_pred HHHHh
Confidence 88875
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PF14432 DYW_deaminase: DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-42 Score=297.56 Aligned_cols=106 Identities=43% Similarity=0.687 Sum_probs=98.7
Q ss_pred cccEEEEcCEEEEEEeCCCCCCchHHHHHHHHhCCCccCCCCCCCCCCchhhhh--------hhhhhccchHHHHHHHhh
Q 047992 739 GQCWIEVKNLVYTFVTGGWSESYSDLLYSWLQNVPENVTARSSHSGLCIEEEEK--------EEISGIHSEKLALAFALI 810 (868)
Q Consensus 739 g~s~i~~~~~~~~f~~~d~~hp~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~--------~~~~~~hse~la~~~~~~ 810 (868)
||||+++ |.|++||++||+...|+ .+...||. |+++.++||++++++ +..+++||||||||||||
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~~~~~-~~~~~~~~--~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAiafgli 74 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQSELIN-KMKEEGYV--PDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAIAFGLI 74 (116)
T ss_pred CCCccce----EEEEeCCCcCccHHHHH-HHHHcCCc--chhhhhCCCchhhhhhhcccccchhhhhccHHHHHHHhccc
Confidence 8999998 99999999999994444 55678999 999999999998877 679999999999999999
Q ss_pred cCCCCCCcEEEeccc-ccCCcchhhhHHHHhhhceEEEEecCCcccccC
Q 047992 811 GSSQAPHTIRIVKNI-RMCVHCHETAKYVSMMHHCEIFLADSKCLHHFK 858 (868)
Q Consensus 811 ~~~~~~~~~~~~knl-r~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~ 858 (868)
+| ||+||+ |||+|||+|+|+||+++||+|||||++||||||
T Consensus 75 ~~-------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 75 NT-------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred ce-------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 87 999999 999999999999999999999999999999997
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-24 Score=266.79 Aligned_cols=627 Identities=11% Similarity=0.047 Sum_probs=348.6
Q ss_pred HhccCChHHHHHHHHHhhhcCCCChhhhhHHHHHHHhcCChhHHHHHHhhcCC--CCce-----------------eHHH
Q 047992 67 CIDSNSIHLARKLHAFLNLVTEIDVFVKTKLLSVYAKCGCLDDAREVFEDMRE--RNLY-----------------TWSA 127 (868)
Q Consensus 67 ~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~-----------------~~~~ 127 (868)
+...++.+.|++.+.++..--+.++.+...++..+.+.|+.++|.+.+++..+ |+.. .+..
T Consensus 38 ~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~ 117 (1157)
T PRK11447 38 GEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQ 117 (1157)
T ss_pred HHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHH
Confidence 33444555555555544222233444445555555555555555555554432 2111 0122
Q ss_pred HHHHHHhCCChhHHHHHHHHhHHCCCCCCcc-hHHHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHcC
Q 047992 128 MIGAYSRDQRWREVVELFFLMVQDGLFPDDF-LFPKILQACGNCGDFEAGKLMHSLVIKLGMSCVRRVRNSVLAVYVKCG 206 (868)
Q Consensus 128 li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 206 (868)
+...+...|++++|+..|+.+.... +|+.. ............++.++|...++.+++.. +.+..+...+...+...|
T Consensus 118 ~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g 195 (1157)
T PRK11447 118 QARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSG 195 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccC
Confidence 2334556666666666666665432 22221 11111111223466666666666666654 234455566666666667
Q ss_pred ChHHHHHHHhhcCCCCh-----------------------hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCccChhhHHH
Q 047992 207 KLIWARRFFESMDEKDG-----------------------VAWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTFNI 263 (868)
Q Consensus 207 ~~~~A~~~f~~~~~~d~-----------------------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ 263 (868)
+.++|...|+++..... ..+...+..+-.......|...+.++......|+... ..
T Consensus 196 ~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~-~~ 274 (1157)
T PRK11447 196 RRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA-RA 274 (1157)
T ss_pred CHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH-HH
Confidence 77777776666543211 1111122222222233455555555443332333221 23
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcc---cHHHHHHHHhc
Q 047992 264 LIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGV---TITSAISACTD 340 (868)
Q Consensus 264 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~---t~~~ll~a~~~ 340 (868)
....+...|++++|+..|++..+..+. +...+..+...+.+.|++++|+..|++..+.. |+.. .+..++...
T Consensus 275 ~G~~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~--p~~~~~~~~~~ll~~~-- 349 (1157)
T PRK11447 275 QGLAAVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQGDRARAVAQFEKALALD--PHSSNRDKWESLLKVN-- 349 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCccchhHHHHHHHhh--
Confidence 345666788888888888888776544 66778888888888888888888888876533 3221 111111000
Q ss_pred hhhHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHcCCCHHHHHHHHHhcCC---CCeehHHHHHHHHHhcCChhHHHHHH
Q 047992 341 LKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEELEAAERVFDMIKD---KDVYSWNSMIAGYCQAGYCGKAYELF 417 (868)
Q Consensus 341 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~vf~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~ 417 (868)
.......+...+.+.|++++|...|++... .+...+..+...+...|++++|++.|
T Consensus 350 ---------------------~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y 408 (1157)
T PRK11447 350 ---------------------RYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYY 408 (1157)
T ss_pred ---------------------hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 000011122334444455555555444432 12233444444455555555555555
Q ss_pred HHhHhCCCCCCeeehhhHHHHHHhcCCHHHHHHHHHhcccCCCC-------CCCeeehhhhHHHHHhcCChhHHHHHHHH
Q 047992 418 IKMQESDVPPNVITWNVLISGYIQNGNEDEAVDLFQRMGKNDKV-------KRNTASWNSLIAGYQQLGQKNNALGVFRK 490 (868)
Q Consensus 418 ~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 490 (868)
++..+.. +.+...+..+...|. .++.++|..+++.+...... ......+..+...+...|++++|++.|++
T Consensus 409 ~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~ 486 (1157)
T PRK11447 409 QQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQ 486 (1157)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5544332 112223333333332 23445555544443221100 00012234445555556666666666665
Q ss_pred hhcCCCCCC-HHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC----
Q 047992 491 MQSSCFYPN-CVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMSSKD---- 565 (868)
Q Consensus 491 m~~~g~~p~-~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~d---- 565 (868)
..+ ..|+ ...+..+...+...|+.+.|...+..+++.. +.++....++...+.+.|+.++|...++.++...
T Consensus 487 Al~--~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~ 563 (1157)
T PRK11447 487 RLA--LDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSN 563 (1157)
T ss_pred HHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChh
Confidence 543 2333 2233344445555566666666666555421 2244445555556677888888888888775321
Q ss_pred c---------eecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCC
Q 047992 566 I---------ITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPM 636 (868)
Q Consensus 566 ~---------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 636 (868)
. ..+..++..+...|+.++|+++++. ..++...+..+...+...|+.++|+..|+...+.. +.+
T Consensus 564 ~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~--P~~ 636 (1157)
T PRK11447 564 IQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE--PGN 636 (1157)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCC
Confidence 1 0122345677888999999998872 23344566677778889999999999999888732 234
Q ss_pred hhHHHHHHHhhhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCch------hHHH
Q 047992 637 IEHYSAMIDLYGRSGKLEEAMEFIEDMP-IEPD-SSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVL------IQRL 708 (868)
Q Consensus 637 ~~~y~~lvd~l~r~g~~~eA~~~i~~~~-~~p~-~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~------~~~~ 708 (868)
...+..++.+|...|++++|++.+++.+ ..|+ ..++..+..++...|+.+.|...++++++..|+++. .+..
T Consensus 637 ~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~ 716 (1157)
T PRK11447 637 ADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRD 716 (1157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHH
Confidence 5678888899999999999999999873 4454 447777888888899999999999999998876653 5566
Q ss_pred HHHHHhhcCCChhHHHH-HHHHHhcCC
Q 047992 709 ILQIYAICGKPEDALKV-RKLERENTR 734 (868)
Q Consensus 709 l~~~y~~~g~~~~a~~~-~~~m~~~~~ 734 (868)
++.+|...|++++|... ++.|...|+
T Consensus 717 ~a~~~~~~G~~~~A~~~y~~Al~~~~~ 743 (1157)
T PRK11447 717 AARFEAQTGQPQQALETYKDAMVASGI 743 (1157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhcCC
Confidence 79999999999999996 555555555
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-22 Score=249.64 Aligned_cols=638 Identities=12% Similarity=0.069 Sum_probs=446.4
Q ss_pred hHHHHHHHHhCCChhHHHHHHHHHhhcCCCCCcccHHHHHHHHhccCChHHHHHHHHHh-hhcCCCChhh----------
Q 047992 25 RDTHLDFLCGNGRLNEAITVLDSIATQGAKVRRNTYINLLQACIDSNSIHLARKLHAFL-NLVTEIDVFV---------- 93 (868)
Q Consensus 25 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~i~~~~-~~~~~~~~~~---------- 93 (868)
.-..++.....++.+.|.+.++++..... .++..+....+.+.+.|+.+.|.+..+.+ ...+ .+...
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p-~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P-~~~~~~~~~~~~~~~ 108 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELIDP-NNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAP-DSNAYRSSRTTMLLS 108 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHhc
Confidence 34556778888999999999998876542 25667777788888899999999998888 4443 23222
Q ss_pred ------hhHHHHHHHhcCChhHHHHHHhhcCCC--CceeHH--HHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHH
Q 047992 94 ------KTKLLSVYAKCGCLDDAREVFEDMRER--NLYTWS--AMIGAYSRDQRWREVVELFFLMVQDGLFPDDFLFPKI 163 (868)
Q Consensus 94 ------~~~li~~~~~~g~~~~A~~~f~~~~~~--~~~~~~--~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~l 163 (868)
...+...+.+.|++++|...|+...+. +..... .........|+.++|+..|+++.+.. +-+......+
T Consensus 109 ~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~L 187 (1157)
T PRK11447 109 TPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTL 187 (1157)
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 133445788899999999999987643 222111 11111224588999999999988752 2234456666
Q ss_pred HHHhhCCCChHHHHHHHHHHHHhCCCCC----------------cc---hHHHHHHHHHHcCChHHHHHHHhhcCCC--C
Q 047992 164 LQACGNCGDFEAGKLMHSLVIKLGMSCV----------------RR---VRNSVLAVYVKCGKLIWARRFFESMDEK--D 222 (868)
Q Consensus 164 l~~~~~~~~~~~a~~~~~~~~~~g~~~~----------------~~---~~~~li~~y~~~g~~~~A~~~f~~~~~~--d 222 (868)
-..+...|+.++|...+..+.+...... .. .+...+..+-.......|...++..... |
T Consensus 188 A~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~d 267 (1157)
T PRK11447 188 ALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLAD 267 (1157)
T ss_pred HHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccC
Confidence 7778888999999999988866431100 00 0111111111112234455555443221 1
Q ss_pred hh-hHHHHHHHHHhcCChhHHHHHHHHHHHcCCccChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC-eeeHHHH-
Q 047992 223 GV-AWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQLGQCDVAMEMVKRMESLGITPD-VFTWTCM- 299 (868)
Q Consensus 223 ~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l- 299 (868)
.. ........+...|++++|+..|++..+.. +.+...+..|...|.+.|+.++|+..|++..+..+... ...|..+
T Consensus 268 p~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll 346 (1157)
T PRK11447 268 PAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLL 346 (1157)
T ss_pred cchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHH
Confidence 11 11233566778999999999999998753 23678889999999999999999999999987654322 1223222
Q ss_pred -----------HHHHHhcCChhHHHHHHHHHHhCCccCCcccHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCCccHHHH
Q 047992 300 -----------ISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLAVKMGFTDDVLVGNS 368 (868)
Q Consensus 300 -----------i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~ 368 (868)
...+.+.|++++|+..|++..... +.+...+..+...+...|+++.|.+.+..+++.. +.+...+..
T Consensus 347 ~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~ 424 (1157)
T PRK11447 347 KVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRG 424 (1157)
T ss_pred HhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 345678999999999999997643 2344566677788889999999999999998864 334455666
Q ss_pred HHHHHHcCCCHHHHHHHHHhcCCCC------------eehHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCeeehhhHH
Q 047992 369 LINMYSKCEELEAAERVFDMIKDKD------------VYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNVLI 436 (868)
Q Consensus 369 li~~y~~~g~~~~A~~vf~~~~~~~------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li 436 (868)
+...|. .++.++|...++.+.... ...+..+...+...|++++|++.|++..+.. +-+...+..+.
T Consensus 425 L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA 502 (1157)
T PRK11447 425 LANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLA 502 (1157)
T ss_pred HHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 777775 457899999888776421 1234556677888999999999999988764 22445566788
Q ss_pred HHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhch
Q 047992 437 SGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVAS 516 (868)
Q Consensus 437 ~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 516 (868)
..|.+.|++++|...|+++.+.. +.+...+..+...+...++.++|+..++.+......++...+..-
T Consensus 503 ~~~~~~G~~~~A~~~l~~al~~~--P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~---------- 570 (1157)
T PRK11447 503 QDLRQAGQRSQADALMRRLAQQK--PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQR---------- 570 (1157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHH----------
Confidence 88999999999999999887654 345555555666677889999999998887543222211111000
Q ss_pred HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCceecHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 047992 517 NKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMSSKDIITWNSLICGYVLHGFWHAALDLFDQMKSFG 596 (868)
Q Consensus 517 ~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 596 (868)
+ .......+.+.|...|+.++|.++++. .+.+...+..+...|.+.|+.++|++.|++..+
T Consensus 571 ---------l-------~~~~~l~~a~~l~~~G~~~eA~~~l~~-~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~-- 631 (1157)
T PRK11447 571 ---------L-------QSDQVLETANRLRDSGKEAEAEALLRQ-QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT-- 631 (1157)
T ss_pred ---------H-------hhhHHHHHHHHHHHCCCHHHHHHHHHh-CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH--
Confidence 0 001123456778899999999999984 345666778889999999999999999999998
Q ss_pred CCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCC-ChhHHHHHHHhhhhcCChHHHHHHHHhC-CCC---C---
Q 047992 597 LKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIP-MIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIE---P--- 667 (868)
Q Consensus 597 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~---p--- 667 (868)
..|+. ..+..+...+...|+.++|++.++...+. .| +...+..+..++.+.|++++|.++++++ +.. |
T Consensus 632 ~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~---~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~ 708 (1157)
T PRK11447 632 REPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT---ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSM 708 (1157)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc---CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcch
Confidence 56754 78888889999999999999999987653 33 3445677888899999999999999987 222 2
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHhc---cCCCCch
Q 047992 668 -DSSIWEALLTACRIHGNIDLAVLAIERLFD---LEPGDVL 704 (868)
Q Consensus 668 -~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~---l~p~~~~ 704 (868)
+..++..+...+...|+.+.|...+++++. +.|..++
T Consensus 709 ~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~~~p~ 749 (1157)
T PRK11447 709 ESALVLRDAARFEAQTGQPQQALETYKDAMVASGITPTRPQ 749 (1157)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCCCCC
Confidence 234666777888999999999999999985 4454444
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-21 Score=228.64 Aligned_cols=646 Identities=11% Similarity=-0.017 Sum_probs=418.7
Q ss_pred HhCCChhHHHHHHHHHhhcCCCCCcccHHHHHHHHhccCChHHHHHHHHHhhhcCCCChhhhhHHHHHHHhcCChhHHHH
Q 047992 33 CGNGRLNEAITVLDSIATQGAKVRRNTYINLLQACIDSNSIHLARKLHAFLNLVTEIDVFVKTKLLSVYAKCGCLDDARE 112 (868)
Q Consensus 33 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 112 (868)
...|++.+|+..|++..+.... +..++..+.+.+...|+.+.|....+......+.|...+..|.. .++.+.|..
T Consensus 55 ~~~Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~----i~~~~kA~~ 129 (987)
T PRK09782 55 QKNNDEATAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAA----IPVEVKSVT 129 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHH----hccChhHHH
Confidence 3348888888888888776543 35667777788888888888888887773333345555444422 278888888
Q ss_pred HHhhcCC--CC-ceeHHHHHHH--------HHhCCChhHHHHHHHHhHHCCCCCCcchHHHH-HHHhhCCCChHHHHHHH
Q 047992 113 VFEDMRE--RN-LYTWSAMIGA--------YSRDQRWREVVELFFLMVQDGLFPDDFLFPKI-LQACGNCGDFEAGKLMH 180 (868)
Q Consensus 113 ~f~~~~~--~~-~~~~~~li~~--------~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~l-l~~~~~~~~~~~a~~~~ 180 (868)
+++++.. |+ ...+..+... |.+.+...++++ .......|+..+.... .+.+...++++.+..++
T Consensus 130 ~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~----lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL 205 (987)
T PRK09782 130 TVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN----DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLY 205 (987)
T ss_pred HHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH----HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 8888753 32 2223223232 555544444443 3332333445544555 77788888888888888
Q ss_pred HHHHHhCCCCCcchHHHHHHHHHH-cCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCc-cCh
Q 047992 181 SLVIKLGMSCVRRVRNSVLAVYVK-CGKLIWARRFFESMDEKDGVAWNSMISGYFQIGENDEAHRLFDKMCREEIK-LGV 258 (868)
Q Consensus 181 ~~~~~~g~~~~~~~~~~li~~y~~-~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~ 258 (868)
..+.+.+. .+......|..+|.. .++ +.|..++......|...+..+...|.+.|+.++|.++++++...-.. |..
T Consensus 206 ~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~ 283 (987)
T PRK09782 206 NEARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQE 283 (987)
T ss_pred HHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCcc
Confidence 88888874 334445666667777 366 77777777655567888888888888888888888888887654322 444
Q ss_pred hhHHHHHHHHHhcCChH-HHHHHHHHHHhcCCCCCe-eeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcccHHHHHH
Q 047992 259 VTFNILIRSYNQLGQCD-VAMEMVKRMESLGITPDV-FTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAIS 336 (868)
Q Consensus 259 ~~~~~li~~~~~~g~~~-~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 336 (868)
.+|--+ ..+.+... .|..-|.+ + ..++. ...-.++..+.++++++.+.++. ...|.......-..
T Consensus 284 ~~~~~~---l~r~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~r~~ 350 (987)
T PRK09782 284 KSWLYL---LSKYSANPVQALANYTV--Q--FADNRQYVVGATLPVLLKEGQYDAAQKLL------ATLPANEMLEERYA 350 (987)
T ss_pred HHHHHH---HHhccCchhhhccchhh--h--hHHHHHHHHHHHHHHHHhccHHHHHHHHh------cCCCcchHHHHHHh
Confidence 333333 33333332 11111111 0 00010 11122356677777777666552 23344333211111
Q ss_pred HHhchhhHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHcCCCHHHHHHHHHhcCC-C-C----eehHHHHHHHHHhcCC-
Q 047992 337 ACTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEELEAAERVFDMIKD-K-D----VYSWNSMIAGYCQAGY- 409 (868)
Q Consensus 337 a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~vf~~~~~-~-~----~~~~~~li~~~~~~g~- 409 (868)
+....+...++.+.+..+.+.. +.+....--+.-...+.|+.++|.++|+.... + + ...-+-++..|.+.+.
T Consensus 351 ~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 429 (987)
T PRK09782 351 VSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYL 429 (987)
T ss_pred hccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcc
Confidence 2223355556666666665542 22444444455556677888888888887665 2 1 1233456677777766
Q ss_pred --hhHHHHHHHHhHhCCCCCCeeehhhHHHHHHhcCCHHH---HHHHHHhcccCCCCCC--CeeehhhhHHHHHhcCChh
Q 047992 410 --CGKAYELFIKMQESDVPPNVITWNVLISGYIQNGNEDE---AVDLFQRMGKNDKVKR--NTASWNSLIAGYQQLGQKN 482 (868)
Q Consensus 410 --~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~---A~~~f~~m~~~~~~~~--~~~~~~~li~~~~~~g~~~ 482 (868)
..++..+-..+-. .+- +.-.|+..+ +...+....... ++ +...|..+..++.. ++++
T Consensus 430 ~~~~~~~~l~~~~~~-------~~~------~~~~~~~~~~~~~~~~~~~al~~~--p~~~~~~a~~~LG~~l~~-~~~~ 493 (987)
T PRK09782 430 ATPAKVAILSKPLPL-------AEQ------RQWQSQLPGIADNCPAIVRLLGDM--SPSYDAAAWNRLAKCYRD-TLPG 493 (987)
T ss_pred cchHHHHHhcccccc-------chh------HHHHhhhhhhhhhHHHHHHhcccC--CCCCCHHHHHHHHHHHHh-CCcH
Confidence 3333333322221 111 111222222 233333332221 34 56677777777776 7888
Q ss_pred HHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 047992 483 NALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMS 562 (868)
Q Consensus 483 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~ 562 (868)
+|+..+.+... ..|+......+..+....|+.+.+...+..+.. .+++...+..+...+.+.|+.++|.+.|++..
T Consensus 494 eAi~a~~~Al~--~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~--~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL 569 (987)
T PRK09782 494 VALYAWLQAEQ--RQPDAWQHRAVAYQAYQVEDYATALAAWQKISL--HDMSNEDLLAAANTAQAAGNGAARDRWLQQAE 569 (987)
T ss_pred HHHHHHHHHHH--hCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhc--cCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 88887777654 346655444444455678888888888887655 34444556677888899999999999998876
Q ss_pred CCCceecHHHHHHH---HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCC-Chh
Q 047992 563 SKDIITWNSLICGY---VLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIP-MIE 638 (868)
Q Consensus 563 ~~d~~~~~~li~~~---~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~ 638 (868)
..++..++...... ...|++++|+..|++..+ ..|+...+..+..++.+.|+.++|...|+..... .| +..
T Consensus 570 ~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l---~Pd~~~ 644 (987)
T PRK09782 570 QRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALEL---EPNNSN 644 (987)
T ss_pred hcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHH
Confidence 55444444433323 344999999999999998 6788888888899999999999999999998873 44 356
Q ss_pred HHHHHHHhhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhc
Q 047992 639 HYSAMIDLYGRSGKLEEAMEFIEDM-PIEPD-SSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAIC 716 (868)
Q Consensus 639 ~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~-~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 716 (868)
.+..+..+|...|++++|++.+++. ...|+ +.+|..+..++...|+++.|+..++++++++|+++......+++....
T Consensus 645 a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~ 724 (987)
T PRK09782 645 YQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQR 724 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHH
Confidence 7788888999999999999999987 55564 558999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHH
Q 047992 717 GKPEDALKVRKL 728 (868)
Q Consensus 717 g~~~~a~~~~~~ 728 (868)
.+++.|.+-.+.
T Consensus 725 ~~~~~a~~~~~r 736 (987)
T PRK09782 725 FNFRRLHEEVGR 736 (987)
T ss_pred HHHHHHHHHHHH
Confidence 999999886553
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.2e-21 Score=226.89 Aligned_cols=597 Identities=12% Similarity=0.036 Sum_probs=402.8
Q ss_pred HhcCChhHHHHHHhhcCC--C-CceeHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHhhCCCChHHHHH
Q 047992 102 AKCGCLDDAREVFEDMRE--R-NLYTWSAMIGAYSRDQRWREVVELFFLMVQDGLFPDDFLFPKILQACGNCGDFEAGKL 178 (868)
Q Consensus 102 ~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 178 (868)
...|++++|...|+...+ | +..++..|...|.+.|++++|+..+++..+. .|+...|..++... ++...+..
T Consensus 55 ~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~~ 129 (987)
T PRK09782 55 QKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSVT 129 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHHH
Confidence 344888888888887643 3 3456777888888888888888888887764 55555555544322 77778888
Q ss_pred HHHHHHHhCCCCCcchHHHHHHH--------HHHcCChHHHHHHHhhcCCC--Chh-hHHHHHHHHHhcCChhHHHHHHH
Q 047992 179 MHSLVIKLGMSCVRRVRNSVLAV--------YVKCGKLIWARRFFESMDEK--DGV-AWNSMISGYFQIGENDEAHRLFD 247 (868)
Q Consensus 179 ~~~~~~~~g~~~~~~~~~~li~~--------y~~~g~~~~A~~~f~~~~~~--d~~-~~~~li~~~~~~g~~~~A~~l~~ 247 (868)
+++.+++... .+..++..+... |.+.+....++. .....+ +.. ..-.....|.+.+++++|++++.
T Consensus 130 ~ye~l~~~~P-~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~ 206 (987)
T PRK09782 130 TVEELLAQQK-ACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYN 206 (987)
T ss_pred HHHHHHHhCC-CChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 8888887763 344455555554 777777677776 333333 333 34444889999999999999999
Q ss_pred HHHHcCCccChhhHHHHHHHHHh-cCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCcc-
Q 047992 248 KMCREEIKLGVVTFNILIRSYNQ-LGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVM- 325 (868)
Q Consensus 248 ~m~~~g~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~- 325 (868)
++.+.+.. +..-...|...|.. .++ +++..+++. .++-+...+..+...|.+.|+.++|.++++++...-..
T Consensus 207 ~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~ 280 (987)
T PRK09782 207 EARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTD 280 (987)
T ss_pred HHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCC
Confidence 99988633 34456666677877 466 777777554 23348888999999999999999999999998654333
Q ss_pred CCcccHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCC-ccHHHHHHHHHHcCCCHHHHHHHHHhcCCCCeehHHHHHHHH
Q 047992 326 PNGVTITSAISACTDLKALAMGMEIHSLAVKMGFTDD-VLVGNSLINMYSKCEELEAAERVFDMIKDKDVYSWNSMIAGY 404 (868)
Q Consensus 326 pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~-~~~~~~li~~y~~~g~~~~A~~vf~~~~~~~~~~~~~li~~~ 404 (868)
|+..++.-.+.-..... ..+..-+ .+ .+.++ ....-.+++.+.+.+..+.+.++.+ ....+.. .-.-..+.
T Consensus 281 ~~~~~~~~~l~r~~~~~--~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~r~~~~ 352 (987)
T PRK09782 281 AQEKSWLYLLSKYSANP--VQALANY---TV-QFADNRQYVVGATLPVLLKEGQYDAAQKLLA-TLPANEM-LEERYAVS 352 (987)
T ss_pred CccHHHHHHHHhccCch--hhhccch---hh-hhHHHHHHHHHHHHHHHHhccHHHHHHHHhc-CCCcchH-HHHHHhhc
Confidence 55555544433322221 1111100 00 01111 1233445788888888888877744 2222221 11111222
Q ss_pred HhcCChhHHHHHHHHhHhCCCCCCeeehhhHHHHHHhcCCHHHHHHHHHhcccC-CCCCCCeeehhhhHHHHHhcCC---
Q 047992 405 CQAGYCGKAYELFIKMQESDVPPNVITWNVLISGYIQNGNEDEAVDLFQRMGKN-DKVKRNTASWNSLIAGYQQLGQ--- 480 (868)
Q Consensus 405 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~f~~m~~~-~~~~~~~~~~~~li~~~~~~g~--- 480 (868)
...+...++...+..|.+.. +-+....-.+.-...+.|+.++|.++|+..... .....+...-+-++..|.+.+.
T Consensus 353 ~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 431 (987)
T PRK09782 353 VATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLAT 431 (987)
T ss_pred cccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccc
Confidence 34466777777777776542 113344444444567788899999998887652 2122233334466777777666
Q ss_pred hhHHHHH-------------------------HHHhhcCCCCCC--HHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCC
Q 047992 481 KNNALGV-------------------------FRKMQSSCFYPN--CVTILSVLPACAYLVASNKVKEIHGCVLRRSLES 533 (868)
Q Consensus 481 ~~~A~~~-------------------------~~~m~~~g~~p~--~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~ 533 (868)
..+|+.+ +.... +..|+ .......+..|...+....|...+..... ..|
T Consensus 432 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al--~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~~~Al~--~~P 507 (987)
T PRK09782 432 PAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLL--GDMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQAEQ--RQP 507 (987)
T ss_pred hHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhc--ccCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHHH--hCC
Confidence 3344333 11111 22233 22222333344444777778887777666 335
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHH
Q 047992 534 SLPVMNSLIDTYAKSGNIVYSRTIFDGMSS--KDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRG-TFLSIILA 610 (868)
Q Consensus 534 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a 610 (868)
+......+...+.+.|++++|...|+++.. ++...|..+...+.+.|+.++|+..|++.++. .|+.. .+..+...
T Consensus 508 d~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--~P~~~~l~~~La~~ 585 (987)
T PRK09782 508 DAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--GLGDNALYWWLHAQ 585 (987)
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCccHHHHHHHHHH
Confidence 544444455666799999999999997653 44556777888899999999999999999984 46553 33344445
Q ss_pred hhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHH
Q 047992 611 HSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPDSS-IWEALLTACRIHGNIDLA 688 (868)
Q Consensus 611 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~~~-~w~~ll~a~~~~~~~~~a 688 (868)
....|+.++|...|+...+ +.|+...|..+..++.+.|+.++|++.+++. ...|+.. .+..+..++...|+.+.|
T Consensus 586 l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeA 662 (987)
T PRK09782 586 RYIPGQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQS 662 (987)
T ss_pred HHhCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 6677999999999999876 5677888999999999999999999999998 5667655 778888899999999999
Q ss_pred HHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHH
Q 047992 689 VLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLER 730 (868)
Q Consensus 689 ~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 730 (868)
+..++++++++|+++.++..|+.+|...|+.++|....+...
T Consensus 663 i~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al 704 (987)
T PRK09782 663 REMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVI 704 (987)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999766553
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-19 Score=186.83 Aligned_cols=443 Identities=16% Similarity=0.148 Sum_probs=297.9
Q ss_pred HHHHHHHHHcCChHHHHHHHhhcCCCChh---hHHHHHHHHHhcCChhHHHHHHHHHHHcCCccChhhHHHHHHHHHhcC
Q 047992 196 NSVLAVYVKCGKLIWARRFFESMDEKDGV---AWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQLG 272 (868)
Q Consensus 196 ~~li~~y~~~g~~~~A~~~f~~~~~~d~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g 272 (868)
..|.+-..+.|++.+|++.-...-+.|.. ..-.+-..+.+..+.+....--....+ ..+.-..+|..+.+.+-..|
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r-~~~q~ae~ysn~aN~~kerg 130 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIR-KNPQGAEAYSNLANILKERG 130 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhh-ccchHHHHHHHHHHHHHHhc
Confidence 34444455556666665554444333211 111122334444444433322211111 11223345555666666666
Q ss_pred ChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcccHHHHHHHHhchhhHHHHHHHHH
Q 047992 273 QCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHS 352 (868)
Q Consensus 273 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~ 352 (868)
++++|+.+++.+.+..++ .+..|..+..++...|+.+.|.+.|.+..+ +.|+...
T Consensus 131 ~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~c---------------------- 185 (966)
T KOG4626|consen 131 QLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYC---------------------- 185 (966)
T ss_pred hHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhh----------------------
Confidence 666666666666555433 455555566666666666666655555532 2233211
Q ss_pred HHHHhCCCCCccHHHHHHHHHHcCCCHHHHHHHHHhcCC--C-CeehHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC-
Q 047992 353 LAVKMGFTDDVLVGNSLINMYSKCEELEAAERVFDMIKD--K-DVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPN- 428 (868)
Q Consensus 353 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~vf~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~- 428 (868)
+.+-+.......|++++|...+....+ | -.+.|+.+...+..+|+...|+..|++.... .|+
T Consensus 186 ------------a~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f 251 (966)
T KOG4626|consen 186 ------------ARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNF 251 (966)
T ss_pred ------------hhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcc
Confidence 122233344456778888777765543 2 3567899988999999999999999988855 343
Q ss_pred eeehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHH
Q 047992 429 VITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLP 508 (868)
Q Consensus 429 ~~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 508 (868)
...|-.|...|...+.+++|+..+.+..... +...+.+..|...|-.+|..|-|+..+++..+ +.|+
T Consensus 252 ~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr--pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~--~~P~--------- 318 (966)
T KOG4626|consen 252 LDAYINLGNVYKEARIFDRAVSCYLRALNLR--PNHAVAHGNLACIYYEQGLLDLAIDTYKRALE--LQPN--------- 318 (966)
T ss_pred hHHHhhHHHHHHHHhcchHHHHHHHHHHhcC--CcchhhccceEEEEeccccHHHHHHHHHHHHh--cCCC---------
Confidence 3467778888888889999998888876543 55667788888888889999999999888764 3443
Q ss_pred HHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHH
Q 047992 509 ACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAA 585 (868)
Q Consensus 509 a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A 585 (868)
-+..|+.|..++-..|++.+|.+.+++.. .....+.|.+...|...|..++|
T Consensus 319 -------------------------F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A 373 (966)
T KOG4626|consen 319 -------------------------FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEA 373 (966)
T ss_pred -------------------------chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHH
Confidence 23346666666666677777777776543 23445677777777777777788
Q ss_pred HHHHHHHHHCCCCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCC-hhHHHHHHHhhhhcCChHHHHHHHHhC
Q 047992 586 LDLFDQMKSFGLKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPM-IEHYSAMIDLYGRSGKLEEAMEFIEDM 663 (868)
Q Consensus 586 ~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lvd~l~r~g~~~eA~~~i~~~ 663 (868)
..+|....+ +.|.- ..++.+.+.+-+.|.+++|+..++.... |.|+ .+.|+-|...|-..|+.++|.+.+.+.
T Consensus 374 ~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rA 448 (966)
T KOG4626|consen 374 TRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR---IKPTFADALSNMGNTYKEMGDVSAAIQCYTRA 448 (966)
T ss_pred HHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh---cCchHHHHHHhcchHHHHhhhHHHHHHHHHHH
Confidence 887777777 66765 5677777777778888888877776653 6776 347888888888889999999988887
Q ss_pred -CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChh
Q 047992 664 -PIEPDSS-IWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPED 721 (868)
Q Consensus 664 -~~~p~~~-~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~ 721 (868)
.+.|.-. ..+.|.+.++-.||++.|...++.+++++|+.+.+|..|.-.+.-.-.|.+
T Consensus 449 I~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 449 IQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence 6777655 888999999999999999999999999999999999999988888888887
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.6e-15 Score=162.58 Aligned_cols=557 Identities=13% Similarity=0.097 Sum_probs=328.6
Q ss_pred hhHHHHHHHHhHHCCCCCCcchHHHHHHHhh--CCCChHHHHHHHHHHHHhCC--CCCcchHHHHHHHHHHcCChHHHHH
Q 047992 138 WREVVELFFLMVQDGLFPDDFLFPKILQACG--NCGDFEAGKLMHSLVIKLGM--SCVRRVRNSVLAVYVKCGKLIWARR 213 (868)
Q Consensus 138 ~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~y~~~g~~~~A~~ 213 (868)
.+.|...|...... .|+. ....+.+||. ..+++..+..+|..++.... .+|+.+. +...+.++|+.+.|..
T Consensus 146 ~~~A~a~F~~Vl~~--sp~N-il~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIg--ig~Cf~kl~~~~~a~~ 220 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQ--SPDN-ILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIG--IGHCFWKLGMSEKALL 220 (1018)
T ss_pred HHHHHHHHHHHHhh--CCcc-hHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccch--hhhHHHhccchhhHHH
Confidence 46777777776653 2322 2334556654 44577778888777666543 3444443 3456677788888888
Q ss_pred HHhhcCCCChhhHHHHHHHHH------hcCChhHHHHHHHHHHHcCCccChhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 047992 214 FFESMDEKDGVAWNSMISGYF------QIGENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQLGQCDVAMEMVKRMESL 287 (868)
Q Consensus 214 ~f~~~~~~d~~~~~~li~~~~------~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 287 (868)
.|.+..+-|+..-++++.... ....+..++.++...-..+ .-++.+.+.|.+.|.-.|+++.++.+...+...
T Consensus 221 a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~ 299 (1018)
T KOG2002|consen 221 AFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKN 299 (1018)
T ss_pred HHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHh
Confidence 887777766554444443221 1123344455544443322 335667777777788888888888777777654
Q ss_pred CCC--CCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcccH--HHHHHHHhchhhHHHHHHHHHHHHHhCCCCCc
Q 047992 288 GIT--PDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTI--TSAISACTDLKALAMGMEIHSLAVKMGFTDDV 363 (868)
Q Consensus 288 g~~--p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~--~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~ 363 (868)
... .-..+|--+..+|-..|++++|...|.+.. +..||.+++ .-+...+...|+++.+...+..+.+.. +.+.
T Consensus 300 t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~--k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~ 376 (1018)
T KOG2002|consen 300 TENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESL--KADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNY 376 (1018)
T ss_pred hhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH--ccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchH
Confidence 211 113346667777778888888888887764 334555433 345566777778888877777777663 3345
Q ss_pred cHHHHHHHHHHcCC----CHHHHHHHHHhcCCC---CeehHHHHHHHHHhcCChhHHHHHHHHh----HhCCCCCCeeeh
Q 047992 364 LVGNSLINMYSKCE----ELEAAERVFDMIKDK---DVYSWNSMIAGYCQAGYCGKAYELFIKM----QESDVPPNVITW 432 (868)
Q Consensus 364 ~~~~~li~~y~~~g----~~~~A~~vf~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m----~~~g~~p~~~t~ 432 (868)
.+...|...|...+ ..+.|..+......+ |..+|-.+...+-+..-+. ++..|... ...+-.+.....
T Consensus 377 etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~-sL~~~~~A~d~L~~~~~~ip~E~L 455 (1018)
T KOG2002|consen 377 ETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWA-SLDAYGNALDILESKGKQIPPEVL 455 (1018)
T ss_pred HHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHH-HHHHHHHHHHHHHHcCCCCCHHHH
Confidence 55666666666554 455666666555543 3445555555554443333 25555433 234444556667
Q ss_pred hhHHHHHHhcCCHHHHHHHHHhcccCCC--CCCCe------eehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHH
Q 047992 433 NVLISGYIQNGNEDEAVDLFQRMGKNDK--VKRNT------ASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTIL 504 (868)
Q Consensus 433 ~~li~~~~~~g~~~~A~~~f~~m~~~~~--~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 504 (868)
|.+...+...|+++.|...|++....-. ..++. .+--.+...+-..++++.|.+.|+..... .|+-++--
T Consensus 456 NNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~y 533 (1018)
T KOG2002|consen 456 NNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAY 533 (1018)
T ss_pred HhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHH
Confidence 7777777788888888888877654410 11111 11223445556667777777777777642 34433211
Q ss_pred HHHHHH-hchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----CCceecHHHHHHHHh
Q 047992 505 SVLPAC-AYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMSS-----KDIITWNSLICGYVL 578 (868)
Q Consensus 505 ~ll~a~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~-----~d~~~~~~li~~~~~ 578 (868)
.=+.+. ...+.+..+...+..++.- ...++.+++-+.+.|.+...+.-|.+-|..+.. +|..+.-+|...|.+
T Consensus 534 lRl~~ma~~k~~~~ea~~~lk~~l~~-d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~ 612 (1018)
T KOG2002|consen 534 LRLGCMARDKNNLYEASLLLKDALNI-DSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQ 612 (1018)
T ss_pred HHhhHHHHhccCcHHHHHHHHHHHhc-ccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHH
Confidence 111111 1123444455544444441 234666666677777777777777775554432 244444344443332
Q ss_pred ------------cCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHH
Q 047992 579 ------------HGFWHAALDLFDQMKSFGLKP-NRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMID 645 (868)
Q Consensus 579 ------------~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd 645 (868)
.+..++|+++|.+.++ ..| |...-+++...+++.|.+++|+.+|.+..+...-.+ ..|--+..
T Consensus 613 ~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~--dv~lNlah 688 (1018)
T KOG2002|consen 613 ALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFE--DVWLNLAH 688 (1018)
T ss_pred HhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCC--ceeeeHHH
Confidence 2345677777777777 455 335556666667778888888888887777433222 33566667
Q ss_pred hhhhcCChHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHH
Q 047992 646 LYGRSGKLEEAMEFIEDM----PIEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQ 711 (868)
Q Consensus 646 ~l~r~g~~~eA~~~i~~~----~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 711 (868)
+|.-.|++-.|++.++.. --+.+..+.+-|..++...|.+.+|..++.+++.+.|.|+..-..++-
T Consensus 689 ~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~ 758 (1018)
T KOG2002|consen 689 CYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLAL 758 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHH
Confidence 777778888888887765 122355577777777777777888888888888888877765544443
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.4e-15 Score=164.31 Aligned_cols=684 Identities=13% Similarity=0.076 Sum_probs=430.4
Q ss_pred chHHHHHHHHhCCChhHHHHHHHHHhhcC-C---CCCcc--cHHHHHHHHh-cc------CC-----hHHHHHHHHHh-h
Q 047992 24 FRDTHLDFLCGNGRLNEAITVLDSIATQG-A---KVRRN--TYINLLQACI-DS------NS-----IHLARKLHAFL-N 84 (868)
Q Consensus 24 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~-~---~~~~~--~~~~ll~~~~-~~------~~-----~~~a~~i~~~~-~ 84 (868)
+|...-..|++.|..++.+.+++.-.-.. . .+... .....+.++. .. .+ +..+...+... +
T Consensus 43 ~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~~~~k~e~~~~at~~~~~A~k 122 (1018)
T KOG2002|consen 43 AWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEKKKDEKDELFDKATLLFDLADK 122 (1018)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhHHHH
Confidence 78999999999999999999987655111 0 01111 1111122221 00 00 11122222222 1
Q ss_pred hcCCCChhhhhHHHHHHHhcCC--hhHHHHHHhhcCCCCceeHHH-HHHHH--HhCCChhHHHHHHHHhHHC--CCCCCc
Q 047992 85 LVTEIDVFVKTKLLSVYAKCGC--LDDAREVFEDMRERNLYTWSA-MIGAY--SRDQRWREVVELFFLMVQD--GLFPDD 157 (868)
Q Consensus 85 ~~~~~~~~~~~~li~~~~~~g~--~~~A~~~f~~~~~~~~~~~~~-li~~~--~~~g~~~~a~~l~~~m~~~--g~~p~~ 157 (868)
-....+..++.. -..|...|+ +++|...|....+.+.----. +..+. ...+++..|+.+|...... ..+||.
T Consensus 123 i~m~~~~~l~~~-~~~~l~~~~~~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~ 201 (1018)
T KOG2002|consen 123 IDMYEDSHLLVQ-RGFLLLEGDKSMDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADV 201 (1018)
T ss_pred hhccCcchhhhh-hhhhhhcCCccHHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCc
Confidence 111111111111 112233343 588988888875422211112 22232 3467999999999996542 445565
Q ss_pred chHHHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHcCC---hHHHHHHHhhcC---CCChhhHHHHHH
Q 047992 158 FLFPKILQACGNCGDFEAGKLMHSLVIKLGMSCVRRVRNSVLAVYVKCGK---LIWARRFFESMD---EKDGVAWNSMIS 231 (868)
Q Consensus 158 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~---~~~A~~~f~~~~---~~d~~~~~~li~ 231 (868)
.. .+-.++.+.++.+.|+..+.+++.... .++..+..|.-+-....+ +..+..++...- ..|++..+.|.+
T Consensus 202 rI--gig~Cf~kl~~~~~a~~a~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn 278 (1018)
T KOG2002|consen 202 RI--GIGHCFWKLGMSEKALLAFERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLAN 278 (1018)
T ss_pred cc--hhhhHHHhccchhhHHHHHHHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHH
Confidence 32 122345788999999999999887653 222222222222222333 334444444322 348899999999
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCcc--ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcCCh
Q 047992 232 GYFQIGENDEAHRLFDKMCREEIKL--GVVTFNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRT 309 (868)
Q Consensus 232 ~~~~~g~~~~A~~l~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 309 (868)
-|.-.|+++.+..+...+......- -...|--+.++|-..|++++|...|.+..+....--+..+--+...|.+.|++
T Consensus 279 ~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dl 358 (1018)
T KOG2002|consen 279 HFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDL 358 (1018)
T ss_pred HHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchH
Confidence 9999999999999999988653221 23457778899999999999999998887764332245556678889999999
Q ss_pred hHHHHHHHHHHhCCccCCcccHHHHHHHHhchh----hHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHcCCC------H
Q 047992 310 SQALDLFKEMSFVGVMPNGVTITSAISACTDLK----ALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEE------L 379 (868)
Q Consensus 310 ~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~----~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~------~ 379 (868)
+.+...|+..... .+-+..|...+-..|+..+ ..+.+..+....++.- ..|...|-.+..+|-...- +
T Consensus 359 e~s~~~fEkv~k~-~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~sL~~~ 436 (1018)
T KOG2002|consen 359 EESKFCFEKVLKQ-LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWASLDAY 436 (1018)
T ss_pred HHHHHHHHHHHHh-CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHHHHHH
Confidence 9999999998643 3334456666666666554 4456666666666554 4456667767766655443 2
Q ss_pred HHHHHHHHhc-CCCCeehHHHHHHHHHhcCChhHHHHHHHHhHhC---CCCCCee------ehhhHHHHHHhcCCHHHHH
Q 047992 380 EAAERVFDMI-KDKDVYSWNSMIAGYCQAGYCGKAYELFIKMQES---DVPPNVI------TWNVLISGYIQNGNEDEAV 449 (868)
Q Consensus 380 ~~A~~vf~~~-~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~~~------t~~~li~~~~~~g~~~~A~ 449 (868)
..|..++..- ....+...|.+...+...|++++|...|.+.... -..+|.. +--.+...+-..++.+.|.
T Consensus 437 ~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~ 516 (1018)
T KOG2002|consen 437 GNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAE 516 (1018)
T ss_pred HHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHH
Confidence 3344333322 2346677899999999999999999999988755 2233432 1122344455677899999
Q ss_pred HHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhc-CCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHH
Q 047992 450 DLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQS-SCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLR 528 (868)
Q Consensus 450 ~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~ 528 (868)
+.+..+.+.. |.-+..|-.+...-...+...+|...+++... ..-.|+..++. -.-+........|..-+..+.+
T Consensus 517 e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~--G~~~l~k~~~~~a~k~f~~i~~ 592 (1018)
T KOG2002|consen 517 EMYKSILKEH--PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLL--GNLHLKKSEWKPAKKKFETILK 592 (1018)
T ss_pred HHHHHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHH--HHHHHhhhhhcccccHHHHHHh
Confidence 9999997764 22222333333222233567788888888654 23344444432 2244455556666665555555
Q ss_pred hCCC-CChhHHHHHHHHHH------------hcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHH
Q 047992 529 RSLE-SSLPVMNSLIDTYA------------KSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQM 592 (868)
Q Consensus 529 ~~~~-~~~~~~~~Li~~y~------------k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m 592 (868)
.-.. +|+...-+|.+.|. ..+..+.|.+.|.+.. ++|..+=|.+...++..|++.+|..+|.+.
T Consensus 593 ~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqV 672 (1018)
T KOG2002|consen 593 KTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQV 672 (1018)
T ss_pred hhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHH
Confidence 3332 58888888888664 2356789999998665 567888899999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCCHH-
Q 047992 593 KSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPDSS- 670 (868)
Q Consensus 593 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~~~- 670 (868)
++... -+..+|+.+...|...|++-.|++.|+...+++.-.-+.+...||..++.++|.+.+|.+..... ...|...
T Consensus 673 rEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~ 751 (1018)
T KOG2002|consen 673 REATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTS 751 (1018)
T ss_pred HHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccch
Confidence 98743 34568889999999999999999999999998887788889999999999999999999987766 3333322
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHHhcC
Q 047992 671 IWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLERENT 733 (868)
Q Consensus 671 ~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 733 (868)
+--.++ ....+.++.++...+. .+=.+....+..++|.++...|...+
T Consensus 752 v~FN~a---------~v~kkla~s~lr~~k~------t~eev~~a~~~le~a~r~F~~ls~~~ 799 (1018)
T KOG2002|consen 752 VKFNLA---------LVLKKLAESILRLEKR------TLEEVLEAVKELEEARRLFTELSKNG 799 (1018)
T ss_pred HHhHHH---------HHHHHHHHHHHhcccc------cHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 111111 1223334444444441 12233444555566666666665443
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-18 Score=192.48 Aligned_cols=310 Identities=13% Similarity=0.058 Sum_probs=187.5
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcccHHHHHHHHhchhhHHHHH
Q 047992 269 NQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISACTDLKALAMGM 348 (868)
Q Consensus 269 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~ 348 (868)
...|++++|...|.++.+.++. +..+|..+...+.+.|++++|+.+++.+...+..++..
T Consensus 46 ~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~------------------- 105 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVDPE-TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQ------------------- 105 (389)
T ss_pred HhcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHH-------------------
Confidence 3444455555555554444221 33455555556666666666666666554321111000
Q ss_pred HHHHHHHHhCCCCCccHHHHHHHHHHcCCCHHHHHHHHHhcCC---CCeehHHHHHHHHHhcCChhHHHHHHHHhHhCCC
Q 047992 349 EIHSLAVKMGFTDDVLVGNSLINMYSKCEELEAAERVFDMIKD---KDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDV 425 (868)
Q Consensus 349 ~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~vf~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 425 (868)
...++..+...|.+.|++++|..+|+.+.+ .+..+++.++..+.+.|++++|++.++.+.+.+.
T Consensus 106 -------------~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 172 (389)
T PRK11788 106 -------------RLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGG 172 (389)
T ss_pred -------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcC
Confidence 012344556666666667777766666654 2445666677777777777777777777765542
Q ss_pred CCCe----eehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHH
Q 047992 426 PPNV----ITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCV 501 (868)
Q Consensus 426 ~p~~----~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 501 (868)
.++. ..+..+...+.+.|++++|...|+++.+.. +.+...+..+...|.+.|++++|.++|+++...+..+...
T Consensus 173 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 250 (389)
T PRK11788 173 DSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD--PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSE 250 (389)
T ss_pred CcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHH
Confidence 2211 123455566677777777777777776543 3344566667777777788888888777776532222234
Q ss_pred hHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC--CCCceecHHHHHHHHh-
Q 047992 502 TILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMS--SKDIITWNSLICGYVL- 578 (868)
Q Consensus 502 t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~--~~d~~~~~~li~~~~~- 578 (868)
++..+..++...|+.+.+.+.+..+.+. .|+...+..++..|.+.|++++|.++|+++. .|+..+++.++..+..
T Consensus 251 ~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~ 328 (389)
T PRK11788 251 VLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAE 328 (389)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhc
Confidence 4555556666666666666666666553 3444555777788888888888888887654 3666677777766553
Q ss_pred --cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHH
Q 047992 579 --HGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGK 621 (868)
Q Consensus 579 --~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 621 (868)
+|+.++|+.+|++|.+.+++|+.. .+|+|.|.+.+-+
T Consensus 329 ~~~g~~~~a~~~~~~~~~~~~~~~p~------~~c~~cg~~~~~~ 367 (389)
T PRK11788 329 AEEGRAKESLLLLRDLVGEQLKRKPR------YRCRNCGFTARTL 367 (389)
T ss_pred cCCccchhHHHHHHHHHHHHHhCCCC------EECCCCCCCCccc
Confidence 557778888888888777777665 3477777654443
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.3e-18 Score=174.47 Aligned_cols=418 Identities=14% Similarity=0.144 Sum_probs=320.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCccCCcccHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHcC
Q 047992 297 TCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKC 376 (868)
Q Consensus 297 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~ 376 (868)
..|..-..+.|++++|.+.-...-+. -+.+..+...+-..+.+..+++...+--...++.. +.-...|..+.+.+-..
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~-d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQE-DPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhcc-CCCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHh
Confidence 34455556677777777765444222 11222222223333445555555444433333332 23345788899999999
Q ss_pred CCHHHHHHHHHhcCC---CCeehHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCeeehh-hHHHHHHhcCCHHHHHHHH
Q 047992 377 EELEAAERVFDMIKD---KDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWN-VLISGYIQNGNEDEAVDLF 452 (868)
Q Consensus 377 g~~~~A~~vf~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~-~li~~~~~~g~~~~A~~~f 452 (868)
|++++|...++.+.+ ..+..|..+..++...|+.+.|.+.|.+.++. .|+.+... -+.......|++.+|...+
T Consensus 130 g~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cY 207 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACY 207 (966)
T ss_pred chHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHH
Confidence 999999999998775 35678999999999999999999999998865 35444433 3444455689999999998
Q ss_pred HhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCH-HhHHHHHHHHhchhchHHHHHHHHHHHHhCC
Q 047992 453 QRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNC-VTILSVLPACAYLVASNKVKEIHGCVLRRSL 531 (868)
Q Consensus 453 ~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~ 531 (868)
.+..+.. +--.+.|+.|...+...|+...|+..|++... +.|+. ..|..+-..+...+.++.|...+..++. .
T Consensus 208 lkAi~~q--p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~--l 281 (966)
T KOG4626|consen 208 LKAIETQ--PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALN--L 281 (966)
T ss_pred HHHHhhC--CceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh--c
Confidence 8887654 44568999999999999999999999999874 56652 2333444444444455555554444444 5
Q ss_pred CC-ChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHH
Q 047992 532 ES-SLPVMNSLIDTYAKSGNIVYSRTIFDGMSS---KDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR-GTFLS 606 (868)
Q Consensus 532 ~~-~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ 606 (868)
.| ...++..+.-.|-..|.++-|...+++..+ .-...||.|..++-..|+..+|.+.|.+.+. +.|+. ...+.
T Consensus 282 rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~N 359 (966)
T KOG4626|consen 282 RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNN 359 (966)
T ss_pred CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHH
Confidence 55 456677788889999999999999998753 3457999999999999999999999999998 78887 68889
Q ss_pred HHHHhhccCChHHHHHHHHHhhhhcCCCCC-hhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcC
Q 047992 607 IILAHSLAGMVDLGKKVFCSITECYQIIPM-IEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPDSS-IWEALLTACRIHG 683 (868)
Q Consensus 607 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~~~-~w~~ll~a~~~~~ 683 (868)
+..++...|.+++|..+|....+ +.|. ....+-+..+|...|++++|..-+++. .++|+.. .++.+...+...|
T Consensus 360 Lgni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g 436 (966)
T KOG4626|consen 360 LGNIYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMG 436 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhh
Confidence 99999999999999999998776 4555 346788999999999999999999988 8899876 8999999999999
Q ss_pred CHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHH
Q 047992 684 NIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLE 729 (868)
Q Consensus 684 ~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 729 (868)
+++.|.+.+++++.++|.-+.++..|+.+|-.+|+..+|..-++.-
T Consensus 437 ~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~a 482 (966)
T KOG4626|consen 437 DVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTA 482 (966)
T ss_pred hHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999865433
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.5e-17 Score=187.90 Aligned_cols=422 Identities=13% Similarity=0.055 Sum_probs=238.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCccChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHh
Q 047992 226 WNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQ 305 (868)
Q Consensus 226 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 305 (868)
+......+.+.|++++|+..|++.... .|+...|..+..+|.+.|++++|++.++...+..+. +...|..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHH
Confidence 445566777888888888888887754 566777888888888888888888888888876443 56678888888889
Q ss_pred cCChhHHHHHHHHHHhCCccCCcccHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHcCCCHHHHHHH
Q 047992 306 NGRTSQALDLFKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEELEAAERV 385 (868)
Q Consensus 306 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~v 385 (868)
.|++++|+..|......+- .+......++..... ..+........+.. +.+...+..+.+ |........+..-
T Consensus 207 lg~~~eA~~~~~~~~~~~~-~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~ 279 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDG-FRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAG 279 (615)
T ss_pred cCCHHHHHHHHHHHHHhCC-CccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhh
Confidence 9999999888776643321 111111111111111 11111111111111 111111221111 1111110000000
Q ss_pred HHhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC-eeehhhHHHHH---HhcCCHHHHHHHHHhcccCCCC
Q 047992 386 FDMIKDKDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPN-VITWNVLISGY---IQNGNEDEAVDLFQRMGKNDKV 461 (868)
Q Consensus 386 f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~---~~~g~~~~A~~~f~~m~~~~~~ 461 (868)
++...+. .|+ ...+..+...+ ...+++++|.+.|+...+.+..
T Consensus 280 ~~~~~~~---------------------------------~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~ 326 (615)
T TIGR00990 280 LEDSNEL---------------------------------DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKL 326 (615)
T ss_pred hhccccc---------------------------------ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCC
Confidence 1100000 000 00011110000 1234566666666665543221
Q ss_pred -CCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHH
Q 047992 462 -KRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNS 540 (868)
Q Consensus 462 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 540 (868)
+.....|+.+...+...|++++|+..|++.... .|+ +...+..
T Consensus 327 ~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~----------------------------------~~~~~~~ 370 (615)
T TIGR00990 327 GEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPR----------------------------------VTQSYIK 370 (615)
T ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCC----------------------------------cHHHHHH
Confidence 223345556666666667777777766665532 222 1223344
Q ss_pred HHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCC
Q 047992 541 LIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR-GTFLSIILAHSLAGM 616 (868)
Q Consensus 541 Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~ 616 (868)
+...|...|++++|...|++.. +.+...|..+...|...|++++|+..|++.++ +.|+. ..+..+..++...|+
T Consensus 371 la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~--l~P~~~~~~~~la~~~~~~g~ 448 (615)
T TIGR00990 371 RASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID--LDPDFIFSHIQLGVTQYKEGS 448 (615)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCccCHHHHHHHHHHHHHCCC
Confidence 4555555666666666665432 33455666666667777777777777777766 45544 445555566667777
Q ss_pred hHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCCH-------HHH-HHHHHHHHhcCCHHH
Q 047992 617 VDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPDS-------SIW-EALLTACRIHGNIDL 687 (868)
Q Consensus 617 ~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~~-------~~w-~~ll~a~~~~~~~~~ 687 (868)
.++|...|+...+.+. .+...|..+..++...|++++|++.+++. ...|+. ..| +..+..+...|+++.
T Consensus 449 ~~eA~~~~~~al~~~P--~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~e 526 (615)
T TIGR00990 449 IASSMATFRRCKKNFP--EAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIE 526 (615)
T ss_pred HHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHH
Confidence 7777777777665322 22455666777777788888888877775 333321 111 112222334588888
Q ss_pred HHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHH
Q 047992 688 AVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLER 730 (868)
Q Consensus 688 a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 730 (868)
|+..++++++++|++..++..|+.+|...|++++|.+..+...
T Consensus 527 A~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~ 569 (615)
T TIGR00990 527 AENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAA 569 (615)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 8888888888888888888888888988999888888766553
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2e-17 Score=182.42 Aligned_cols=298 Identities=16% Similarity=0.140 Sum_probs=217.1
Q ss_pred HHHHHHhcCChhHHHHHHHHhHhCCCCCCeeehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCC--CeeehhhhHHHHHh
Q 047992 400 MIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKR--NTASWNSLIAGYQQ 477 (868)
Q Consensus 400 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~--~~~~~~~li~~~~~ 477 (868)
....+...|++++|+..|.++.+.+ +.+..++..+...|...|++++|..+++.+.......+ ....+..++..|.+
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 3445667788888888888888764 23445677778888888888888888888766431111 12456677777888
Q ss_pred cCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 047992 478 LGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTI 557 (868)
Q Consensus 478 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~ 557 (868)
.|++++|..+|+++.+. .| .+..+++.++.+|.+.|++++|.+.
T Consensus 120 ~g~~~~A~~~~~~~l~~--~~----------------------------------~~~~~~~~la~~~~~~g~~~~A~~~ 163 (389)
T PRK11788 120 AGLLDRAEELFLQLVDE--GD----------------------------------FAEGALQQLLEIYQQEKDWQKAIDV 163 (389)
T ss_pred CCCHHHHHHHHHHHHcC--Cc----------------------------------chHHHHHHHHHHHHHhchHHHHHHH
Confidence 88888888888877643 11 2344556667777777777777777
Q ss_pred HhcCCCCCc--------eecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCChHHHHHHHHHhh
Q 047992 558 FDGMSSKDI--------ITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR-GTFLSIILAHSLAGMVDLGKKVFCSIT 628 (868)
Q Consensus 558 f~~~~~~d~--------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~ 628 (868)
|+.+...+. ..|..++..+...|+.++|++.|+++.+ ..|+. ..+..+...+.+.|+.++|.++|+.+.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 241 (389)
T PRK11788 164 AERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALA--ADPQCVRASILLGDLALAQGDYAAAIEALERVE 241 (389)
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh--HCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 776643211 1345566677788888888888888877 34543 466666677888888888888888877
Q ss_pred hhcCCCCC--hhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchh
Q 047992 629 ECYQIIPM--IEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLI 705 (868)
Q Consensus 629 ~~~~~~p~--~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~ 705 (868)
+. .|+ ...+..++.+|.+.|++++|.+.++++ ...|+...+..+...+...|+++.|...++++++..|++...
T Consensus 242 ~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~ 318 (389)
T PRK11788 242 EQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGF 318 (389)
T ss_pred HH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHH
Confidence 63 233 355777888899999999999999887 556777777888888999999999999999999999988755
Q ss_pred HHHHHHHHhh--cCCChhHHHHHHHHHhcCCCCCCc
Q 047992 706 QRLILQIYAI--CGKPEDALKVRKLERENTRRNSFG 739 (868)
Q Consensus 706 ~~~l~~~y~~--~g~~~~a~~~~~~m~~~~~~k~~g 739 (868)
..++...+.. .|+.+++..+.+.|..++++..|.
T Consensus 319 ~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 319 HRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 5444443322 569999999999999999998887
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.5e-16 Score=184.11 Aligned_cols=358 Identities=8% Similarity=-0.008 Sum_probs=225.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhcCC---CCeehHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCeeehhhHHHHHHhc
Q 047992 366 GNSLINMYSKCEELEAAERVFDMIKD---KDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNVLISGYIQN 442 (868)
Q Consensus 366 ~~~li~~y~~~g~~~~A~~vf~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~ 442 (868)
+..+...+.+.|++++|..+++.... .+...+..++..+...|++++|+..+++..+.. +.+.. +..+...+...
T Consensus 52 ~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~ 129 (765)
T PRK10049 52 YAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRA 129 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHC
Confidence 44455555555555555555555322 233344455555555556666666665555442 22223 55555556666
Q ss_pred CCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHH------hHHHHHHHH-----h
Q 047992 443 GNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCV------TILSVLPAC-----A 511 (868)
Q Consensus 443 g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------t~~~ll~a~-----~ 511 (868)
|+.++|+..++++.+.. |.+...+..+...+...+..++|++.++.... .|+.. .....+... .
T Consensus 130 g~~~~Al~~l~~al~~~--P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~ 204 (765)
T PRK10049 130 GRHWDELRAMTQALPRA--PQTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRS 204 (765)
T ss_pred CCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccC
Confidence 66666666666665543 33444445555555566666666666655442 22210 000111111 1
Q ss_pred chhch---HHHHHHHHHHHHh-CCCCChh--HHHHH---HHHHHhcCCHHHHHHHHhcCCCCCc--ee--cHHHHHHHHh
Q 047992 512 YLVAS---NKVKEIHGCVLRR-SLESSLP--VMNSL---IDTYAKSGNIVYSRTIFDGMSSKDI--IT--WNSLICGYVL 578 (868)
Q Consensus 512 ~~~~~---~~~~~i~~~~~~~-~~~~~~~--~~~~L---i~~y~k~g~~~~A~~~f~~~~~~d~--~~--~~~li~~~~~ 578 (868)
..+.+ +.+.+.+..+++. ...|+.. ...+. +-++...|+.++|...|+++...+. .. --.+...|..
T Consensus 205 ~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~ 284 (765)
T PRK10049 205 EKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLK 284 (765)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHh
Confidence 11122 4555555565543 1222221 11111 2233466999999999998875321 11 1224668889
Q ss_pred cCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHhhccCChHHHHHHHHHhhhhcC----------CCCC---hhHH
Q 047992 579 HGFWHAALDLFDQMKSFGLKPNR-----GTFLSIILAHSLAGMVDLGKKVFCSITECYQ----------IIPM---IEHY 640 (868)
Q Consensus 579 ~g~~~~A~~l~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~----------~~p~---~~~y 640 (868)
.|++++|+..|+++.+. .|.. .....+..++...|..++|..+++.+.+... -.|+ ...+
T Consensus 285 ~g~~e~A~~~l~~~l~~--~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~ 362 (765)
T PRK10049 285 LHQPEKAQSILTELFYH--PETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQ 362 (765)
T ss_pred cCCcHHHHHHHHHHhhc--CCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHH
Confidence 99999999999998763 3432 3455566678899999999999998876421 1223 2345
Q ss_pred HHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCC
Q 047992 641 SAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGK 718 (868)
Q Consensus 641 ~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 718 (868)
..+..++...|++++|++.++++ ...| +...|..+...+...|+.+.|+..++++++++|++...++.++.++...|+
T Consensus 363 ~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~ 442 (765)
T PRK10049 363 SLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQE 442 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCC
Confidence 66788999999999999999997 3344 455899999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHhc
Q 047992 719 PEDALKVRKLEREN 732 (868)
Q Consensus 719 ~~~a~~~~~~m~~~ 732 (868)
|++|.++.+.+.++
T Consensus 443 ~~~A~~~~~~ll~~ 456 (765)
T PRK10049 443 WRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999988777543
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.5e-14 Score=140.71 Aligned_cols=474 Identities=12% Similarity=0.129 Sum_probs=303.2
Q ss_pred hHHHhHHhhHHHHhccCCCCcc-------------hHHHHHHHHhCCChhHHHHHHHHHhhcCCCCCcccHHHHHHHHh-
Q 047992 3 IWILTTFQQLHSLLTKKSNPRF-------------RDTHLDFLCGNGRLNEAITVLDSIATQGAKVRRNTYINLLQACI- 68 (868)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~-------------~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~- 68 (868)
+|+..+|..+.+.-..-|...+ -..-+-....+|...++.-+|+.|.+.|+..+...-..|++.-+
T Consensus 83 r~l~~E~~~LF~~~~~QP~l~~F~P~~l~~~~~V~~E~nL~kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~ 162 (625)
T KOG4422|consen 83 RELATEWPTLFAFDRDQPQLPVFRPRHLADPLQVETENNLLKMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTY 162 (625)
T ss_pred HHHHHhchHhhhccccCccccccCchhcCCchhhcchhHHHHHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Confidence 6888888777765433333221 12233446788999999999999999999888887777776532
Q ss_pred -ccCChHHH-HHHHHHh-hhcCCCChhhhhHHHHHHHhcCChhHHHHHHhhcCCCCceeHHHHHHHHHhCCChhHHHHHH
Q 047992 69 -DSNSIHLA-RKLHAFL-NLVTEIDVFVKTKLLSVYAKCGCLDDAREVFEDMRERNLYTWSAMIGAYSRDQRWREVVELF 145 (868)
Q Consensus 69 -~~~~~~~a-~~i~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~ 145 (868)
.+.+..-+ .+-|-.+ +.|-. +..+ -|.|.+.+ -+|+..| +...++.+||.|.++....+.|.++|
T Consensus 163 ~Ns~~~~~~E~~~Fv~~~~~~E~-S~~s--------WK~G~vAd--L~~E~~P-KT~et~s~mI~Gl~K~~~~ERA~~L~ 230 (625)
T KOG4422|consen 163 YNSSNVPFAEWEEFVGMRNFGED-STSS--------WKSGAVAD--LLFETLP-KTDETVSIMIAGLCKFSSLERARELY 230 (625)
T ss_pred hcCCCCcchhHHHHhhccccccc-cccc--------cccccHHH--HHHhhcC-CCchhHHHHHHHHHHHHhHHHHHHHH
Confidence 33332222 1122222 22222 2222 24565554 5555554 55678999999999999999999999
Q ss_pred HHhHHCCCCCCcchHHHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHcCChHHHHHHHhhcCCCChhh
Q 047992 146 FLMVQDGLFPDDFLFPKILQACGNCGDFEAGKLMHSLVIKLGMSCVRRVRNSVLAVYVKCGKLIWARRFFESMDEKDGVA 225 (868)
Q Consensus 146 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~ 225 (868)
.+......+.+..+|+.+|.+-+ +..++.+...|+.....||.+++|++++..++.|+++.|++
T Consensus 231 kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~------------ 294 (625)
T KOG4422|consen 231 KEHRAAKGKVYREAFNGLIGASS----YSVGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARK------------ 294 (625)
T ss_pred HHHHHhhheeeHHhhhhhhhHHH----hhccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHH------------
Confidence 99999888999999999998865 34458899999999999999999999999999999888875
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCccChhhHHHHHHHHHhcCChHH-HHHHHHHHHhcCCCCCeeeHHHHHHHHH
Q 047992 226 WNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQLGQCDV-AMEMVKRMESLGITPDVFTWTCMISGFA 304 (868)
Q Consensus 226 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~g~~p~~~~~~~li~~~~ 304 (868)
.|++++.+|++-|+.|...+|..+|..+.+.++..+ |..++.++...
T Consensus 295 ---------------aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~----------------- 342 (625)
T KOG4422|consen 295 ---------------AALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNS----------------- 342 (625)
T ss_pred ---------------HHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHh-----------------
Confidence 467888999999999999888888888887776543 33333333321
Q ss_pred hcCChhHHHHHHHHHHhCCcc----CCcccHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHcCCCHH
Q 047992 305 QNGRTSQALDLFKEMSFVGVM----PNGVTITSAISACTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEELE 380 (868)
Q Consensus 305 ~~g~~~~A~~l~~~m~~~g~~----pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 380 (868)
+....++ .|...|.+.+..|.++.+.+.|.++++........ -..|..
T Consensus 343 --------------ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~-------------~~ig~~- 394 (625)
T KOG4422|consen 343 --------------LTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNW-------------KFIGPD- 394 (625)
T ss_pred --------------hccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCch-------------hhcChH-
Confidence 1112222 24456788889999999999999998776432100 000000
Q ss_pred HHHHHHHhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCeeehhhHHHHHHhcCCHHHHHHHHHhcccCCC
Q 047992 381 AAERVFDMIKDKDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNVLISGYIQNGNEDEAVDLFQRMGKNDK 460 (868)
Q Consensus 381 ~A~~vf~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~ 460 (868)
+ ....-|..+....++....+.-+..|+.|.-.-+-|+..+...++++..-.|.++-.-+++..+..-+
T Consensus 395 -----~-----~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g- 463 (625)
T KOG4422|consen 395 -----Q-----HRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYG- 463 (625)
T ss_pred -----H-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhh-
Confidence 0 01123444555556666667777777777766667777888888888777888877777777775422
Q ss_pred CCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHH---hHHHHHHHHhchhchHHH-HHHHHHHHHhCCCCChh
Q 047992 461 VKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCV---TILSVLPACAYLVASNKV-KEIHGCVLRRSLESSLP 536 (868)
Q Consensus 461 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~a~~~~~~~~~~-~~i~~~~~~~~~~~~~~ 536 (868)
..-+.+--.+++..|......|+.. -+.....-|+. +...+ ..--..+.+ .+....
T Consensus 464 ----------------ht~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aa--d~~e~~e~~~~R~r~--~~~~~t 523 (625)
T KOG4422|consen 464 ----------------HTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAA--DIKEAYESQPIRQRA--QDWPAT 523 (625)
T ss_pred ----------------hhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHH--HHHHHHHhhHHHHHh--ccCChh
Confidence 1112222334445555444455422 23333322221 11111 111112222 344556
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCC-CC----CceecHHHHHH---HHhcCChHHHHHHHHHHHHC
Q 047992 537 VMNSLIDTYAKSGNIVYSRTIFDGMS-SK----DIITWNSLICG---YVLHGFWHAALDLFDQMKSF 595 (868)
Q Consensus 537 ~~~~Li~~y~k~g~~~~A~~~f~~~~-~~----d~~~~~~li~~---~~~~g~~~~A~~l~~~m~~~ 595 (868)
..+...-.+.+.|+.++|.++|.-+. .. -....|+|+.- -.+.....+|+..++-|...
T Consensus 524 ~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~ 590 (625)
T KOG4422|consen 524 SLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAF 590 (625)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 66777778889999999999998773 22 23356655433 33456667777777776553
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.1e-15 Score=178.48 Aligned_cols=409 Identities=10% Similarity=-0.022 Sum_probs=245.9
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCC-cccHHHHH
Q 047992 257 GVVTFNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPN-GVTITSAI 335 (868)
Q Consensus 257 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll 335 (868)
+.....-.+......|+.++|++++.+..... +.+...+..+...+.+.|++++|+++|++.... .|+ ......+.
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la 90 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLI 90 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 44445556667777888888888887776522 224445777777788888888888888877543 233 33344444
Q ss_pred HHHhchhhHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHcCCCHHHHHHHHHhcCCC---CeehHHHHHHHHHhcCChhH
Q 047992 336 SACTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEELEAAERVFDMIKDK---DVYSWNSMIAGYCQAGYCGK 412 (868)
Q Consensus 336 ~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~vf~~~~~~---~~~~~~~li~~~~~~g~~~~ 412 (868)
..+...++.+.|...+..+++.. +.+.. +..+..++...|+.++|...++++.+. +...+..+...+...+..++
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH
Confidence 55556666666666666665552 22333 555555556666666666666555432 22334444445555555555
Q ss_pred HHHHHHHhHhCCCCCCee------ehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCCh---hH
Q 047992 413 AYELFIKMQESDVPPNVI------TWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQK---NN 483 (868)
Q Consensus 413 A~~l~~~m~~~g~~p~~~------t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~---~~ 483 (868)
|+..++.... .|+.. ....++..+.. ......+++ ++
T Consensus 169 Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~-------------------------------~~~~~~~r~~~ad~ 214 (765)
T PRK10049 169 ALGAIDDANL---TPAEKRDLEADAAAELVRLSFM-------------------------------PTRSEKERYAIADR 214 (765)
T ss_pred HHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcc-------------------------------cccChhHHHHHHHH
Confidence 5555544442 12200 00001111100 000111122 44
Q ss_pred HHHHHHHhhcC-CCCCCHH-hHH----HHHHHHhchhchHHHHHHHHHHHHhCCC-CChhHHHHHHHHHHhcCCHHHHHH
Q 047992 484 ALGVFRKMQSS-CFYPNCV-TIL----SVLPACAYLVASNKVKEIHGCVLRRSLE-SSLPVMNSLIDTYAKSGNIVYSRT 556 (868)
Q Consensus 484 A~~~~~~m~~~-g~~p~~~-t~~----~ll~a~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~Li~~y~k~g~~~~A~~ 556 (868)
|++.++.+... ...|+.. .+. ..+.+....+..+.+...+..+++.+-+ |+ .....+.+.|...|++++|..
T Consensus 215 Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~~ 293 (765)
T PRK10049 215 ALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKAQS 293 (765)
T ss_pred HHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHHHH
Confidence 55555555432 1122211 111 0122333445566666666666554321 21 122225677888888888888
Q ss_pred HHhcCCCCCc-------eecHHHHHHHHhcCChHHHHHHHHHHHHCC-----------CCCCH---HHHHHHHHHhhccC
Q 047992 557 IFDGMSSKDI-------ITWNSLICGYVLHGFWHAALDLFDQMKSFG-----------LKPNR---GTFLSIILAHSLAG 615 (868)
Q Consensus 557 ~f~~~~~~d~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-----------~~p~~---~t~~~ll~a~~~~g 615 (868)
.|+++...+. ..+..+..++...|++++|+++++++.... -.||. ..+.....++...|
T Consensus 294 ~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g 373 (765)
T PRK10049 294 ILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSN 373 (765)
T ss_pred HHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcC
Confidence 8887653221 234455667788899999999988888731 12332 23345566788899
Q ss_pred ChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHH
Q 047992 616 MVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPDS-SIWEALLTACRIHGNIDLAVLAIE 693 (868)
Q Consensus 616 ~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~~-~~w~~ll~a~~~~~~~~~a~~~~~ 693 (868)
+.++|+..++.+....+ .+...+..+..++.+.|+.++|++.+++. ...||. ..+..+.......|+++.|+..++
T Consensus 374 ~~~eA~~~l~~al~~~P--~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~ 451 (765)
T PRK10049 374 DLPQAEMRARELAYNAP--GNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTD 451 (765)
T ss_pred CHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 99999999999887533 33567888899999999999999999998 566764 477777778888999999999999
Q ss_pred HHhccCCCCchhHH
Q 047992 694 RLFDLEPGDVLIQR 707 (868)
Q Consensus 694 ~~~~l~p~~~~~~~ 707 (868)
++++.+|+++.+..
T Consensus 452 ~ll~~~Pd~~~~~~ 465 (765)
T PRK10049 452 DVVAREPQDPGVQR 465 (765)
T ss_pred HHHHhCCCCHHHHH
Confidence 99999999985543
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.4e-15 Score=174.13 Aligned_cols=326 Identities=9% Similarity=-0.010 Sum_probs=205.9
Q ss_pred HHHHHHHcCCCHHHHHHHHHhcCC---CCeehHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCeeehhhHHHHHHhcCC
Q 047992 368 SLINMYSKCEELEAAERVFDMIKD---KDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNVLISGYIQNGN 444 (868)
Q Consensus 368 ~li~~y~~~g~~~~A~~vf~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~ 444 (868)
.++....+.|+.++|..+++.+.. .+...+..++.+....|++++|+..|+++.... +.+...+..+...+.+.|+
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~ 125 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQ 125 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCC
Confidence 344555667777777777766643 244455556666667777777777777777653 2344556666677777777
Q ss_pred HHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHH
Q 047992 445 EDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHG 524 (868)
Q Consensus 445 ~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~ 524 (868)
+++|...|++..... +.+...|..+...+.+.|++++|...++.+... .|+.......+..+...|+++.|.....
T Consensus 126 ~~~Ai~~l~~Al~l~--P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~--~P~~~~a~~~~~~l~~~g~~~eA~~~~~ 201 (656)
T PRK15174 126 YATVADLAEQAWLAF--SGNSQIFALHLRTLVLMDKELQAISLARTQAQE--VPPRGDMIATCLSFLNKSRLPEDHDLAR 201 (656)
T ss_pred HHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 777777777776543 445566777777777777777777777766543 2332222222233556677777777776
Q ss_pred HHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHH----HHHHHHHHHHCCC
Q 047992 525 CVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHA----ALDLFDQMKSFGL 597 (868)
Q Consensus 525 ~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~----A~~l~~~m~~~g~ 597 (868)
.+++....++......+...|.+.|+.++|...|++.. +.+...++.+...|...|+.++ |+..|++..+ +
T Consensus 202 ~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~--l 279 (656)
T PRK15174 202 ALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ--F 279 (656)
T ss_pred HHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh--h
Confidence 66654322333344445566777777777777777554 3345566667777777777764 6777777776 4
Q ss_pred CCCH-HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCC-hhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCCHHHHHH
Q 047992 598 KPNR-GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPM-IEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPDSSIWEA 674 (868)
Q Consensus 598 ~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~~~~w~~ 674 (868)
.|+. ..+..+...+...|+.++|..+++...+. .|+ ...+..+..+|.+.|++++|.+.++++ ...|+...|..
T Consensus 280 ~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l---~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~ 356 (656)
T PRK15174 280 NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT---HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNR 356 (656)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHH
Confidence 5654 45566666677777777777777776653 232 334555666777777777777777766 34555443333
Q ss_pred -HHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 047992 675 -LLTACRIHGNIDLAVLAIERLFDLEPGDV 703 (868)
Q Consensus 675 -ll~a~~~~~~~~~a~~~~~~~~~l~p~~~ 703 (868)
+..++...|+.+.|...++++++.+|++.
T Consensus 357 ~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 357 YAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 34456667777777777777777777654
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.6e-14 Score=165.47 Aligned_cols=369 Identities=11% Similarity=0.025 Sum_probs=236.7
Q ss_pred hchhhHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHcCCCHHHHHHHHHhcCCCCeehHHHHHHHHHh--cCChhHHHHH
Q 047992 339 TDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEELEAAERVFDMIKDKDVYSWNSMIAGYCQ--AGYCGKAYEL 416 (868)
Q Consensus 339 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~vf~~~~~~~~~~~~~li~~~~~--~g~~~~A~~l 416 (868)
...|+++.|.+++..+++.. +.+..++..++..|...++.++|.+.++.+...+......+..+|.. .++..+|++.
T Consensus 113 ~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~ 191 (822)
T PRK14574 113 RNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQA 191 (822)
T ss_pred HHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHH
Confidence 33344444444444444443 22345555677788888999999999988877544433334444444 4555558888
Q ss_pred HHHhHhCCCCCCeeehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCC
Q 047992 417 FIKMQESDVPPNVITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCF 496 (868)
Q Consensus 417 ~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 496 (868)
++++.+.. +-+...+..+.....+.|-...|.++..+-+.-. .+....| + ..+.|.+..+- +.
T Consensus 192 ~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f--~~~~~~~--l--------~~~~~a~~vr~----a~ 254 (822)
T PRK14574 192 SSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLV--SAEHYRQ--L--------ERDAAAEQVRM----AV 254 (822)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcccc--CHHHHHH--H--------HHHHHHHHHhh----cc
Confidence 88888774 3345556777788888888888887777653211 1111111 0 01111111111 11
Q ss_pred CCCHHhHHHHHHHHhchhchHHHHHHHHHHHHh-C-CCCCh-hHHHHHHH---HHHhcCCHHHHHHHHhcCCCCC--ce-
Q 047992 497 YPNCVTILSVLPACAYLVASNKVKEIHGCVLRR-S-LESSL-PVMNSLID---TYAKSGNIVYSRTIFDGMSSKD--II- 567 (868)
Q Consensus 497 ~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~-~-~~~~~-~~~~~Li~---~y~k~g~~~~A~~~f~~~~~~d--~~- 567 (868)
.|+..- -.+....+.+..-.+.++.. + .++.. ....+.+| ++.+.|+..++.+.|+.+.... +.
T Consensus 255 ~~~~~~-------~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~ 327 (822)
T PRK14574 255 LPTRSE-------TERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPD 327 (822)
T ss_pred cccccc-------hhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCH
Confidence 111000 00111223333333333331 1 12221 22334444 4567899999999999988432 23
Q ss_pred -ecHHHHHHHHhcCChHHHHHHHHHHHHCCC----CC-CHHHHHHHHHHhhccCChHHHHHHHHHhhhhcC---------
Q 047992 568 -TWNSLICGYVLHGFWHAALDLFDQMKSFGL----KP-NRGTFLSIILAHSLAGMVDLGKKVFCSITECYQ--------- 632 (868)
Q Consensus 568 -~~~~li~~~~~~g~~~~A~~l~~~m~~~g~----~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--------- 632 (868)
.--++..+|...+++++|+.+|+++..... .| +......|..|+..++++++|..+++.+.+.-.
T Consensus 328 y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~ 407 (822)
T PRK14574 328 YARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLP 407 (822)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCC
Confidence 345678889999999999999999876431 12 223356788899999999999999999887322
Q ss_pred -CCCCh---hHHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhH
Q 047992 633 -IIPMI---EHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQ 706 (868)
Q Consensus 633 -~~p~~---~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~ 706 (868)
-.|+. +.+..++..+...|++.+|++.++++ ...| |..++..+....+..|+...|+..++.+..++|++...+
T Consensus 408 ~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~ 487 (822)
T PRK14574 408 GKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILE 487 (822)
T ss_pred CCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHH
Confidence 02332 24455677788999999999999998 3334 566889999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHhc
Q 047992 707 RLILQIYAICGKPEDALKVRKLEREN 732 (868)
Q Consensus 707 ~~l~~~y~~~g~~~~a~~~~~~m~~~ 732 (868)
+.+++.+-..|+|++|.++.+...+.
T Consensus 488 ~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 488 RAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 99999999999999998877655443
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.3e-12 Score=133.80 Aligned_cols=613 Identities=15% Similarity=0.115 Sum_probs=458.9
Q ss_pred cCChhHHHHHHhhcCCC---CceeHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHhhCCCChHHHHHHH
Q 047992 104 CGCLDDAREVFEDMRER---NLYTWSAMIGAYSRDQRWREVVELFFLMVQDGLFPDDFLFPKILQACGNCGDFEAGKLMH 180 (868)
Q Consensus 104 ~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 180 (868)
.++...|+.++....+- +...|-+-.+.=-..|.+..|..+..+=-+. .+-+...| |.++ ++...+.|+.+.
T Consensus 264 l~DikKaR~llKSvretnP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~-cprSeDvW---Leai-RLhp~d~aK~vv 338 (913)
T KOG0495|consen 264 LEDIKKARLLLKSVRETNPKHPPGWIASARLEEVAGKLSVARNLIMKGCEE-CPRSEDVW---LEAI-RLHPPDVAKTVV 338 (913)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhh-CCchHHHH---HHHH-hcCChHHHHHHH
Confidence 34677788888887653 3445655544444556666665554332211 12222233 3332 455667788887
Q ss_pred HHHHHhCCCCCcchHHHHHHHHHHcCChHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCccC
Q 047992 181 SLVIKLGMSCVRRVRNSVLAVYVKCGKLIWARRFFESMDE---KDGVAWNSMISGYFQIGENDEAHRLFDKMCREEIKLG 257 (868)
Q Consensus 181 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 257 (868)
...++.-. .++.+|-...+. ..+...-.+++....+ .++..|-+.+ .....+.|.-++.+..+.- +.+
T Consensus 339 A~Avr~~P-~Sv~lW~kA~dL---E~~~~~K~RVlRKALe~iP~sv~LWKaAV----elE~~~darilL~rAvecc-p~s 409 (913)
T KOG0495|consen 339 ANAVRFLP-TSVRLWLKAADL---ESDTKNKKRVLRKALEHIPRSVRLWKAAV----ELEEPEDARILLERAVECC-PQS 409 (913)
T ss_pred HHHHHhCC-CChhhhhhHHhh---hhHHHHHHHHHHHHHHhCCchHHHHHHHH----hccChHHHHHHHHHHHHhc-cch
Confidence 77777542 233333222211 1122223344443332 3556675544 4456677888888776531 222
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHH----HHhCCccCCcccHHH
Q 047992 258 VVTFNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKE----MSFVGVMPNGVTITS 333 (868)
Q Consensus 258 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~----m~~~g~~pd~~t~~~ 333 (868)
.-|.-+|++..-++.|..+++...+. ++.+...|-+-...=-.+|+.+....++.+ +...|+..+...|..
T Consensus 410 ----~dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~ 484 (913)
T KOG0495|consen 410 ----MDLWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLK 484 (913)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHH
Confidence 33555677788889999999998876 444888888887777888988888877654 556789999999998
Q ss_pred HHHHHhchhhHHHHHHHHHHHHHhCCCCC--ccHHHHHHHHHHcCCCHHHHHHHHHhcCC---CCeehHHHHHHHHHhcC
Q 047992 334 AISACTDLKALAMGMEIHSLAVKMGFTDD--VLVGNSLINMYSKCEELEAAERVFDMIKD---KDVYSWNSMIAGYCQAG 408 (868)
Q Consensus 334 ll~a~~~~~~~~~a~~i~~~~~~~g~~~~--~~~~~~li~~y~~~g~~~~A~~vf~~~~~---~~~~~~~~li~~~~~~g 408 (868)
=..+|-..|..-.+..|...++..|++.. ..+++.-.+.+.+.+.++-|+.+|....+ .+...|...+..--..|
T Consensus 485 eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hg 564 (913)
T KOG0495|consen 485 EAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHG 564 (913)
T ss_pred HHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcC
Confidence 89999999999999999999998887643 34778888889999999999999987765 46677888888888889
Q ss_pred ChhHHHHHHHHhHhCCCCCCeeehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHH
Q 047992 409 YCGKAYELFIKMQESDVPPNVITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVF 488 (868)
Q Consensus 409 ~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 488 (868)
..++-..+|.+....- +-....|-.....+-..|++..|..++....+.. +.+...|-+-+..-..+..+++|..+|
T Consensus 565 t~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~--pnseeiwlaavKle~en~e~eraR~ll 641 (913)
T KOG0495|consen 565 TRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN--PNSEEIWLAAVKLEFENDELERARDLL 641 (913)
T ss_pred cHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC--CCcHHHHHHHHHHhhccccHHHHHHHH
Confidence 9999999999988764 3456667777777888999999999999887764 557788999999999999999999999
Q ss_pred HHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-C
Q 047992 489 RKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMSS--K-D 565 (868)
Q Consensus 489 ~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~-d 565 (868)
.+... ..|+...|.--..---.++..+.+.++.+..++. ++.-..+|..+.+.|-..++++.|+..|..-.. | .
T Consensus 642 akar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ 718 (913)
T KOG0495|consen 642 AKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNS 718 (913)
T ss_pred HHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCC
Confidence 98875 5677777766666666788999999999888884 555677899999999999999999999986553 3 4
Q ss_pred ceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHH
Q 047992 566 IITWNSLICGYVLHGFWHAALDLFDQMKSFGLKP-NRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMI 644 (868)
Q Consensus 566 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv 644 (868)
+..|-.+...--+.|....|..+|++.+.. .| |...|...+..-.+.|..++|........++ .+.+-..|+--|
T Consensus 719 ipLWllLakleEk~~~~~rAR~ildrarlk--NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI 794 (913)
T KOG0495|consen 719 IPLWLLLAKLEEKDGQLVRARSILDRARLK--NPKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAI 794 (913)
T ss_pred chHHHHHHHHHHHhcchhhHHHHHHHHHhc--CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHH
Confidence 557888888888899999999999999884 45 4578899999999999999999999888874 344556788889
Q ss_pred HhhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHH
Q 047992 645 DLYGRSGKLEEAMEFIEDMPIEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALK 724 (868)
Q Consensus 645 d~l~r~g~~~eA~~~i~~~~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~ 724 (868)
.+..|.++-..+.+.+++. +-|+.+.-+..........++.|..-++++++.+|++..+|..+-..+...|.-++-.+
T Consensus 795 ~le~~~~rkTks~DALkkc--e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~ke 872 (913)
T KOG0495|consen 795 WLEPRPQRKTKSIDALKKC--EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKE 872 (913)
T ss_pred HhccCcccchHHHHHHHhc--cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHH
Confidence 9999999988888888886 45666666666777888999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCcccEEEEcCEE
Q 047992 725 VRKLERENTRRNSFGQCWIEVKNLV 749 (868)
Q Consensus 725 ~~~~m~~~~~~k~~g~s~i~~~~~~ 749 (868)
|++.-..... .-|..|+-+...|
T Consensus 873 v~~~c~~~EP--~hG~~W~avSK~i 895 (913)
T KOG0495|consen 873 VLKKCETAEP--THGELWQAVSKDI 895 (913)
T ss_pred HHHHHhccCC--CCCcHHHHHhhhH
Confidence 9987654332 2377887765544
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.5e-14 Score=168.32 Aligned_cols=447 Identities=13% Similarity=0.016 Sum_probs=228.7
Q ss_pred HHHHHHHHcCChHHHHHHHhhcCC--CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCccChhhHHHHHHHHHhcCCh
Q 047992 197 SVLAVYVKCGKLIWARRFFESMDE--KDGVAWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQLGQC 274 (868)
Q Consensus 197 ~li~~y~~~g~~~~A~~~f~~~~~--~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 274 (868)
.....|.+.|+++.|...|++... |+...|..+..+|.+.|++++|++.+....+.. +.+...+..+..+|...|++
T Consensus 132 ~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~ 210 (615)
T TIGR00990 132 EKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKY 210 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCH
Confidence 345567777788888877776543 456677777788888888888888888877643 22455777778888888888
Q ss_pred HHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcccHHHHHHHHhchhhHHHHHHHHHHH
Q 047992 275 DVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLA 354 (868)
Q Consensus 275 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~ 354 (868)
++|+.-|......+...+ .....++..+.. ..+.......... .+++......+.. +...........-+...
T Consensus 211 ~eA~~~~~~~~~~~~~~~-~~~~~~~~~~l~----~~a~~~~~~~l~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 283 (615)
T TIGR00990 211 ADALLDLTASCIIDGFRN-EQSAQAVERLLK----KFAESKAKEILET-KPENLPSVTFVGN-YLQSFRPKPRPAGLEDS 283 (615)
T ss_pred HHHHHHHHHHHHhCCCcc-HHHHHHHHHHHH----HHHHHHHHHHHhc-CCCCCCCHHHHHH-HHHHccCCcchhhhhcc
Confidence 888877766544321111 111111111111 1222222222211 1122222222111 11100000000000000
Q ss_pred HHhCCCCCccHHHHHHHHHHcCCCHHHHHHHHHhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHhHhCC-CCC-Ceeeh
Q 047992 355 VKMGFTDDVLVGNSLINMYSKCEELEAAERVFDMIKDKDVYSWNSMIAGYCQAGYCGKAYELFIKMQESD-VPP-NVITW 432 (868)
Q Consensus 355 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~vf~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p-~~~t~ 432 (868)
...+......++..+... .-....+++++|++.|+...+.+ ..| +...|
T Consensus 284 ----~~~~~~~~~~~~~l~~~~-------------------------~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~ 334 (615)
T TIGR00990 284 ----NELDEETGNGQLQLGLKS-------------------------PESKADESYEEAARAFEKALDLGKLGEKEAIAL 334 (615)
T ss_pred ----cccccccccchHHHHHHH-------------------------HHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHH
Confidence 000110001111100000 00011233444444444444332 111 22334
Q ss_pred hhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhc
Q 047992 433 NVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAY 512 (868)
Q Consensus 433 ~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 512 (868)
+.+...+...|++++|+..|++..+.. +.+...|..+...+...|++++|+..|++.... .|+
T Consensus 335 ~~lg~~~~~~g~~~eA~~~~~kal~l~--P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~p~------------- 397 (615)
T TIGR00990 335 NLRGTFKCLKGKHLEALADLSKSIELD--PRVTQSYIKRASMNLELGDPDKAEEDFDKALKL--NSE------------- 397 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCC-------------
Confidence 445555555666666666666554432 223345555555666666666666666655432 121
Q ss_pred hhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHH
Q 047992 513 LVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLF 589 (868)
Q Consensus 513 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~ 589 (868)
+..++..+...|...|++++|...|++.. +.+...|..+...+.+.|+.++|+..|
T Consensus 398 ---------------------~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~ 456 (615)
T TIGR00990 398 ---------------------DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATF 456 (615)
T ss_pred ---------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 23344445555555556666655555443 233445555555666666666666666
Q ss_pred HHHHHCCCCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChh--------HHHHHHHhhhhcCChHHHHHHH
Q 047992 590 DQMKSFGLKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIE--------HYSAMIDLYGRSGKLEEAMEFI 660 (868)
Q Consensus 590 ~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~--------~y~~lvd~l~r~g~~~eA~~~i 660 (868)
++.++ ..|+. ..+..+..++...|++++|+..|+...+ +.|+.. .+.....++...|++++|.+++
T Consensus 457 ~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~---l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~ 531 (615)
T TIGR00990 457 RRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE---LEKETKPMYMNVLPLINKALALFQWKQDFIEAENLC 531 (615)
T ss_pred HHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh---cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 66655 34432 4455555556666666666666665544 122110 1111122334468899999998
Q ss_pred HhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHHh
Q 047992 661 EDM-PIEPDSS-IWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLERE 731 (868)
Q Consensus 661 ~~~-~~~p~~~-~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 731 (868)
++. ...|+.. .|..+...+...|+++.|...+++++++.+.....+ .+..|.++.+++...++
T Consensus 532 ~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~~--------~a~~~~~a~~~~~~~~~ 596 (615)
T TIGR00990 532 EKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGELV--------QAISYAEATRTQIQVQE 596 (615)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHHH--------HHHHHHHHHHHHHHHHH
Confidence 885 5556554 788888889999999999999999999987644322 22345566666554443
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.4e-15 Score=174.03 Aligned_cols=353 Identities=10% Similarity=0.003 Sum_probs=261.2
Q ss_pred cccHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHcCCCHHHHHHHHHhcCC---CCeehHHHHHHHH
Q 047992 328 GVTITSAISACTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEELEAAERVFDMIKD---KDVYSWNSMIAGY 404 (868)
Q Consensus 328 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~vf~~~~~---~~~~~~~~li~~~ 404 (868)
..-...++..+.+.|+.+.+..++...+.....+ ......++......|++++|...|+.+.. .+...|..+...+
T Consensus 42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l 120 (656)
T PRK15174 42 EQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVL 120 (656)
T ss_pred ccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 3445667778888899999999988888776444 33444455666678999999999988765 2456788888888
Q ss_pred HhcCChhHHHHHHHHhHhCCCCCCeeehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHH
Q 047992 405 CQAGYCGKAYELFIKMQESDVPPNVITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNA 484 (868)
Q Consensus 405 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A 484 (868)
.+.|++++|+..|++..+.. +.+...+..+...+...|++++|...++.+.... +.+...+..+ ..+.+.|++++|
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~--P~~~~a~~~~-~~l~~~g~~~eA 196 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV--PPRGDMIATC-LSFLNKSRLPED 196 (656)
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--CCCHHHHHHH-HHHHHcCCHHHH
Confidence 99999999999999988753 3345667788888999999999999998776543 2333334333 347888999999
Q ss_pred HHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHH----HHHHHhc
Q 047992 485 LGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVY----SRTIFDG 560 (868)
Q Consensus 485 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~----A~~~f~~ 560 (868)
...++.+......++......+..++...|..+.+.+.+..+++.. +.+..++..|..+|.+.|+.++ |...|++
T Consensus 197 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~ 275 (656)
T PRK15174 197 HDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRH 275 (656)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHH
Confidence 9999887765433444444455567778899999999888888743 3367778889999999999885 7888886
Q ss_pred CC---CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCC
Q 047992 561 MS---SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPM 636 (868)
Q Consensus 561 ~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 636 (868)
.. +.+...|..+...+...|++++|+..+++..+ ..|+. .....+..++...|++++|...|+.+.+. .|+
T Consensus 276 Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~--l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~---~P~ 350 (656)
T PRK15174 276 ALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA--THPDLPYVRAMYARALRQVGQYTAASDEFVQLARE---KGV 350 (656)
T ss_pred HHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---Ccc
Confidence 54 44566888888899999999999999999888 56765 45566677888899999999999888764 344
Q ss_pred h-hHHHHHHHhhhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 047992 637 I-EHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGD 702 (868)
Q Consensus 637 ~-~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~ 702 (868)
. ..+..+..+|...|+.++|.+.+++. ...|+.. ..+++.|...+.++++.-+..
T Consensus 351 ~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~-----------~~~~~ea~~~~~~~~~~~~~~ 407 (656)
T PRK15174 351 TSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL-----------PQSFEEGLLALDGQISAVNLP 407 (656)
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc-----------hhhHHHHHHHHHHHHHhcCCc
Confidence 3 22344567788899999999998886 4555543 355667888888777765543
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.7e-13 Score=155.14 Aligned_cols=214 Identities=10% Similarity=0.005 Sum_probs=127.1
Q ss_pred HHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhC-----CCCChhHHHHHHHHHHh
Q 047992 473 AGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRS-----LESSLPVMNSLIDTYAK 547 (868)
Q Consensus 473 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~-----~~~~~~~~~~Li~~y~k 547 (868)
-++...|++.++++.|+.|...|.+....+-..+.+++...+..++|..++..+.... .+++......|.-+|..
T Consensus 300 ~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld 379 (822)
T PRK14574 300 GALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNE 379 (822)
T ss_pred HHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHh
Confidence 3445555666666666666555543233333344444444444444444444433321 11122223445555555
Q ss_pred cCCHHHHHHHHhcCCCCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHhhccCChHHHHHHHHH
Q 047992 548 SGNIVYSRTIFDGMSSKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTF-LSIILAHSLAGMVDLGKKVFCS 626 (868)
Q Consensus 548 ~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll~a~~~~g~~~~a~~~~~~ 626 (868)
.|++++|..+++.+....+.-++ -+ |.. .....||-... ......+.-.|++.+|.+.++.
T Consensus 380 ~e~~~~A~~~l~~~~~~~p~~~~----~~---~~~-----------~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~ 441 (822)
T PRK14574 380 SEQLDKAYQFAVNYSEQTPYQVG----VY---GLP-----------GKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLED 441 (822)
T ss_pred cccHHHHHHHHHHHHhcCCcEEe----cc---CCC-----------CCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55555555555555432110000 00 000 01133444333 3344556788999999999998
Q ss_pred hhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCch
Q 047992 627 ITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPDSS-IWEALLTACRIHGNIDLAVLAIERLFDLEPGDVL 704 (868)
Q Consensus 627 m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~~~-~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~ 704 (868)
+.... +-+......+.+++...|+..+|++.++.. ...|+.. +...+..+....++++.|+.+.+++++..|++++
T Consensus 442 l~~~a--P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~ 519 (822)
T PRK14574 442 LSSTA--PANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIP 519 (822)
T ss_pred HHHhC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchh
Confidence 87632 334566888999999999999999999876 5667655 6667777788889999999999999999999985
Q ss_pred hH
Q 047992 705 IQ 706 (868)
Q Consensus 705 ~~ 706 (868)
.-
T Consensus 520 ~~ 521 (822)
T PRK14574 520 SQ 521 (822)
T ss_pred HH
Confidence 54
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.2e-11 Score=124.37 Aligned_cols=608 Identities=15% Similarity=0.118 Sum_probs=405.8
Q ss_pred CChHHHHHHHHHhhhcCCCChhhhhHHHHHHHhcCChhHHHHHHhhcC---CCCceeHHHHHHHHHhCCChhHHHHHHHH
Q 047992 71 NSIHLARKLHAFLNLVTEIDVFVKTKLLSVYAKCGCLDDAREVFEDMR---ERNLYTWSAMIGAYSRDQRWREVVELFFL 147 (868)
Q Consensus 71 ~~~~~a~~i~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~a~~l~~~ 147 (868)
+++..|+.++..+....+.++..+-+-.+.=-..|++..|+.+...-- .++.-.|---|+ -..++.|..+.-.
T Consensus 265 ~DikKaR~llKSvretnP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLeaiR----Lhp~d~aK~vvA~ 340 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRETNPKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEAIR----LHPPDVAKTVVAN 340 (913)
T ss_pred HHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHHHh----cCChHHHHHHHHH
Confidence 567778888888722223334444444444456677777777765432 233334433332 2334444444444
Q ss_pred hHHCCCCCCcchHHHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHcCChHHHHHHHhhcCC---CChh
Q 047992 148 MVQDGLFPDDFLFPKILQACGNCGDFEAGKLMHSLVIKLGMSCVRRVRNSVLAVYVKCGKLIWARRFFESMDE---KDGV 224 (868)
Q Consensus 148 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~d~~ 224 (868)
... ..|+++. .-+++.--..+...-+.++...+.. ++.++..|-+. ....+.++|+.++.+..+ .+..
T Consensus 341 Avr--~~P~Sv~--lW~kA~dLE~~~~~K~RVlRKALe~-iP~sv~LWKaA----VelE~~~darilL~rAveccp~s~d 411 (913)
T KOG0495|consen 341 AVR--FLPTSVR--LWLKAADLESDTKNKKRVLRKALEH-IPRSVRLWKAA----VELEEPEDARILLERAVECCPQSMD 411 (913)
T ss_pred HHH--hCCCChh--hhhhHHhhhhHHHHHHHHHHHHHHh-CCchHHHHHHH----HhccChHHHHHHHHHHHHhccchHH
Confidence 333 2333332 1222222122222223333333332 23333344333 334455556666665443 1333
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCccChhhHHHHHHHHHhcCChHHHHHHHHH----HHhcCCCCCeeeHHHHH
Q 047992 225 AWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQLGQCDVAMEMVKR----MESLGITPDVFTWTCMI 300 (868)
Q Consensus 225 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~g~~p~~~~~~~li 300 (868)
.|. +|++..-++.|..+++...+ .++.+...|.+....=-..|..+...+++++ +...|+..+...|-.=.
T Consensus 412 Lwl----AlarLetYenAkkvLNkaRe-~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eA 486 (913)
T KOG0495|consen 412 LWL----ALARLETYENAKKVLNKARE-IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEA 486 (913)
T ss_pred HHH----HHHHHHHHHHHHHHHHHHHh-hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHH
Confidence 333 34445556666666666553 3455666666666666666777766666654 33446666666776666
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCccCC--cccHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHcCCC
Q 047992 301 SGFAQNGRTSQALDLFKEMSFVGVMPN--GVTITSAISACTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEE 378 (868)
Q Consensus 301 ~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~ 378 (868)
..+-..|..--+..+......-|+.-. ..|+......|.+.+.++-++.++..+++. ++.+..+|...+..--..|.
T Consensus 487 e~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt 565 (913)
T KOG0495|consen 487 EACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGT 565 (913)
T ss_pred HHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCc
Confidence 677777777667777666665565432 346777777788888888888888877765 35566677777777677788
Q ss_pred HHHHHHHHHhcCC---CCeehHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCeeehhhHHHHHHhcCCHHHHHHHHHhc
Q 047992 379 LEAAERVFDMIKD---KDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNVLISGYIQNGNEDEAVDLFQRM 455 (868)
Q Consensus 379 ~~~A~~vf~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~f~~m 455 (868)
.++-..+|+.... +..+.|-.....+-..|+...|..++.+..+... -+...|-+-+..-..+..++.|..+|.+.
T Consensus 566 ~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~p-nseeiwlaavKle~en~e~eraR~llaka 644 (913)
T KOG0495|consen 566 RESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANP-NSEEIWLAAVKLEFENDELERARDLLAKA 644 (913)
T ss_pred HHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC-CcHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 8888888887654 3556788888888888999999988888887652 25667788888888888999999999888
Q ss_pred ccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHH-HHHHHHhchhchHHHHHHHHHHHHhCCCCC
Q 047992 456 GKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTIL-SVLPACAYLVASNKVKEIHGCVLRRSLESS 534 (868)
Q Consensus 456 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~ 534 (868)
... .++...|.--+..---.++.++|++++++..+ .-|+..-+- .+-..+-+.++++.++..+..-.+. .+..
T Consensus 645 r~~---sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk--~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ 718 (913)
T KOG0495|consen 645 RSI---SGTERVWMKSANLERYLDNVEEALRLLEEALK--SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNS 718 (913)
T ss_pred hcc---CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH--hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCC
Confidence 764 57788888878877788889999999887764 466655443 3334456667777777776654442 3347
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 047992 535 LPVMNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAH 611 (868)
Q Consensus 535 ~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 611 (868)
+.+|-.|.+.-.+.|.+-.|+.+|++.. ++|...|-..|..-.++|..++|..+..+.++. ..-+...|.--+...
T Consensus 719 ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le 797 (913)
T KOG0495|consen 719 IPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLE 797 (913)
T ss_pred chHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhc
Confidence 8899999999999999999999999765 457889999999999999999999999998884 333446666666666
Q ss_pred hccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHH
Q 047992 612 SLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPDSS-IWEALLTACRIHGNIDLAV 689 (868)
Q Consensus 612 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~~~-~w~~ll~a~~~~~~~~~a~ 689 (868)
-+.+.-......++.. +-+....-.+..++-...+++.|.+.|.+. ...||.. +|--+..-...||+-+.-.
T Consensus 798 ~~~~rkTks~DALkkc------e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~k 871 (913)
T KOG0495|consen 798 PRPQRKTKSIDALKKC------EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQK 871 (913)
T ss_pred cCcccchHHHHHHHhc------cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHH
Confidence 6666644444444332 233344566777888889999999999988 6667654 9999999999999999999
Q ss_pred HHHHHHhccCCCCchhHHHHHH
Q 047992 690 LAIERLFDLEPGDVLIQRLILQ 711 (868)
Q Consensus 690 ~~~~~~~~l~p~~~~~~~~l~~ 711 (868)
.++.+...-+|.+...|...|.
T Consensus 872 ev~~~c~~~EP~hG~~W~avSK 893 (913)
T KOG0495|consen 872 EVLKKCETAEPTHGELWQAVSK 893 (913)
T ss_pred HHHHHHhccCCCCCcHHHHHhh
Confidence 9999999999999888877664
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.8e-12 Score=139.76 Aligned_cols=647 Identities=14% Similarity=0.090 Sum_probs=345.8
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHhccCChHHHHHHHHHh-hhcCCCChhhhhHHHHHHHhcCChhHHHHHHhhcCCCC
Q 047992 43 TVLDSIATQGAKVRRNTYINLLQACIDSNSIHLARKLHAFL-NLVTEIDVFVKTKLLSVYAKCGCLDDAREVFEDMRERN 121 (868)
Q Consensus 43 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~i~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~ 121 (868)
.++-.+...|+.|+..||.+++..|+..|+++.|- ++..| ...++-...+.+.++......++.+.+. .|-
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 45666777899999999999999999999999988 89988 7777777888999999988888887765 677
Q ss_pred ceeHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHhhCCCChHHHHHHHHHHH-HhCCCCCcchHHHHHH
Q 047992 122 LYTWSAMIGAYSRDQRWREVVELFFLMVQDGLFPDDFLFPKILQACGNCGDFEAGKLMHSLVI-KLGMSCVRRVRNSVLA 200 (868)
Q Consensus 122 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~-~~g~~~~~~~~~~li~ 200 (868)
..+|+.|..+|.+.|+... ++..++- ...+...++..|....-..++-.+. .-++-||. ...+.
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veqd-----------Le~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda---~n~il 147 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQD-----------LESINQSFSDHGVGSPERWFLMKIHCCPHSLPDA---ENAIL 147 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHHH-----------HHHHHhhhhhhccCcHHHHHHhhcccCcccchhH---HHHHH
Confidence 7899999999999998765 2222220 1112222222222111111110000 00111222 22333
Q ss_pred HHHHcCChHHHHHHHhhcCCC--ChhhHHHHHHHHHhcCC-hhHHHHHHHHHHHcCCccChhhHHHHHHHHHhcCChHHH
Q 047992 201 VYVKCGKLIWARRFFESMDEK--DGVAWNSMISGYFQIGE-NDEAHRLFDKMCREEIKLGVVTFNILIRSYNQLGQCDVA 277 (868)
Q Consensus 201 ~y~~~g~~~~A~~~f~~~~~~--d~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 277 (868)
...-.|-++.+.++...+|.. +. ..-..++-...... +++-........+ .|++.+|.+++..-...|+++.|
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~~-p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~A 223 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWNA-PFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGA 223 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCcccccc-hHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhH
Confidence 444556677777777776642 11 11112333333222 2222222222222 58888999999988899999999
Q ss_pred HHHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcccHHHHHHHHhchhhHHHHHHHHHHHHHh
Q 047992 278 MEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLAVKM 357 (868)
Q Consensus 278 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~ 357 (868)
..++.+|.++|++.+..-|..++-+ .++...+..+++-|...|+.|+..|+..-+..|...+....+.+....
T Consensus 224 k~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~---- 296 (1088)
T KOG4318|consen 224 KNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQL---- 296 (1088)
T ss_pred HHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccch----
Confidence 9999999999988888877777777 778888888888888889999999988877777665543332221100
Q ss_pred CCCCCccHHHHHHHHHHcCCCHHH--HHHHHHhcCC-------CCeehHHHHHHHHHhcCChhHHHHHHHHhHhCC--CC
Q 047992 358 GFTDDVLVGNSLINMYSKCEELEA--AERVFDMIKD-------KDVYSWNSMIAGYCQAGYCGKAYELFIKMQESD--VP 426 (868)
Q Consensus 358 g~~~~~~~~~~li~~y~~~g~~~~--A~~vf~~~~~-------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~ 426 (868)
....+..++.++++.......++. +.-+....++ .....|...+ -...+|.-++..++-..|..-- ..
T Consensus 297 ~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~-~l~hQgk~e~veqlvg~l~npt~r~s 375 (1088)
T KOG4318|consen 297 AHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCE-KLRHQGKGEEVEQLVGQLLNPTLRDS 375 (1088)
T ss_pred hhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHH-HHHHcCCCchHHHHHhhhcCCccccC
Confidence 000001111111111000001100 0001111110 0111222111 1112333333333333332110 00
Q ss_pred C-CeeehhhHHHHHHh----------------------cC------------CHHHHHHHHHhcccCCCCCCCeeeh---
Q 047992 427 P-NVITWNVLISGYIQ----------------------NG------------NEDEAVDLFQRMGKNDKVKRNTASW--- 468 (868)
Q Consensus 427 p-~~~t~~~li~~~~~----------------------~g------------~~~~A~~~f~~m~~~~~~~~~~~~~--- 468 (868)
+ ++..|..++.-|.+ .. +...+.+-+..+... ........|
T Consensus 376 ~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~-Eler~he~~~~~ 454 (1088)
T KOG4318|consen 376 GQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSST-ELERSHEPWPLI 454 (1088)
T ss_pred cchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHH-HHhcccccchhh
Confidence 0 11112122211111 00 111111111111000 001111111
Q ss_pred --------hhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHh--CCCCChhHH
Q 047992 469 --------NSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRR--SLESSLPVM 538 (868)
Q Consensus 469 --------~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~ 538 (868)
+.++-.++..-+..+++..-+..... .-| ..|..++.-|.....++.+..+.+.+... .+..|...+
T Consensus 455 ~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~-lf~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m 531 (1088)
T KOG4318|consen 455 AHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDL-LFA--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLM 531 (1088)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhh--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhH
Confidence 23344444444444444332222211 111 34667777777777777777777776442 244567778
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCCc------eecHHHHHHHHhcCChHHHHHHHHHHHHCCC---------------
Q 047992 539 NSLIDTYAKSGNIVYSRTIFDGMSSKDI------ITWNSLICGYVLHGFWHAALDLFDQMKSFGL--------------- 597 (868)
Q Consensus 539 ~~Li~~y~k~g~~~~A~~~f~~~~~~d~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--------------- 597 (868)
..+.+...+-+.+.++..+..++.+.-. .+.--|..+.+..|+.+.--++++-+...|+
T Consensus 532 ~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~etgPl~~vhLrkdd 611 (1088)
T KOG4318|consen 532 TSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSETGPLWMVHLRKDD 611 (1088)
T ss_pred HHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhcccceEEEeeccc
Confidence 8888888888888888888887764211 1222334445556666555555555444332
Q ss_pred ---------------CCCHHHHHHHHHH---------------------hhccCChHHHHHHHHHhhhhcCC--------
Q 047992 598 ---------------KPNRGTFLSIILA---------------------HSLAGMVDLGKKVFCSITECYQI-------- 633 (868)
Q Consensus 598 ---------------~p~~~t~~~ll~a---------------------~~~~g~~~~a~~~~~~m~~~~~~-------- 633 (868)
+|.....-.+... +.+.|.+.++.++.+ ..|+
T Consensus 612 ~s~a~ea~e~~~qkyk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di~e----tpG~r~r~~RDr 687 (1088)
T KOG4318|consen 612 QSAAQEAPEPEEQKYKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITE----TPGVRCRNGRDR 687 (1088)
T ss_pred hhhhhhcchHHHHHhcCChHHHHHHHHHHHhhccccHHHHHhhcchhHHHHhcccccchhhccc----cCcccccCCCcc
Confidence 2222221222211 122223323322221 1111
Q ss_pred -------CC---------ChhHHHHHHHhhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHH
Q 047992 634 -------IP---------MIEHYSAMIDLYGRSGKLEEAMEFIEDMPIEPDSSIWEALLTACRIHG---NIDLAVLAIER 694 (868)
Q Consensus 634 -------~p---------~~~~y~~lvd~l~r~g~~~eA~~~i~~~~~~p~~~~w~~ll~a~~~~~---~~~~a~~~~~~ 694 (868)
.| ...+..-+..+|-+.|+++.|..++.++++-|+......|++..+.+. |+..+...-++
T Consensus 688 ~~de~e~~~lEll~elt~~lg~~dRLL~sy~~~g~~erA~glwnK~QV~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ek 767 (1088)
T KOG4318|consen 688 DTDEGEIVPLELLLELTHELGKNDRLLQSYLEEGRIERASGLWNKDQVSKSPMKLFHLASILRRMNEEVDVPEIQAETEK 767 (1088)
T ss_pred ccccCccccHHHHHHHHhHhHHHHHHHHHHHhhhHHHHHHhHHhhCcCCcchHHHHHHHHHHHhhchhccchhHHHHHHH
Confidence 01 111233366688899999999999999998999998888988888764 66777777788
Q ss_pred HhccCCCCc---hhHHHHHHHHhhcCCCh-hHHHHHHHHHhcC
Q 047992 695 LFDLEPGDV---LIQRLILQIYAICGKPE-DALKVRKLERENT 733 (868)
Q Consensus 695 ~~~l~p~~~---~~~~~l~~~y~~~g~~~-~a~~~~~~m~~~~ 733 (868)
+-++.|..+ ..|.-.+- .+.+++.. -|.+.....++..
T Consensus 768 as~~~~~f~ttt~~~~~~a~-~a~q~~qkkaAkk~f~r~eeq~ 809 (1088)
T KOG4318|consen 768 ASELRTLFPTTTCYYEGYAF-FATQTEQKKAAKKCFERLEEQL 809 (1088)
T ss_pred HHhcccccccchHhhhhhHH-HHhhHHHHHHHHHHHHHHHHcc
Confidence 887776543 33333333 34455555 5556777666663
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.6e-12 Score=130.36 Aligned_cols=330 Identities=15% Similarity=0.123 Sum_probs=212.1
Q ss_pred ceeHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHhh--CCCChHHH-HHHHHHHHHhCCCCCcchHHHH
Q 047992 122 LYTWSAMIGAYSRDQRWREVVELFFLMVQDGLFPDDFLFPKILQACG--NCGDFEAG-KLMHSLVIKLGMSCVRRVRNSV 198 (868)
Q Consensus 122 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~--~~~~~~~a-~~~~~~~~~~g~~~~~~~~~~l 198 (868)
+++=|.|+.. ..+|...++.-+|+.|.+.|+..+...-..|++..+ ...++--+ .+.|-.+.+.|- ....+|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E-~S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGE-DSTSSW--- 190 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccc-cccccc---
Confidence 3456666654 457889999999999999998888776666665432 22222222 223333444442 222222
Q ss_pred HHHHHHcCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCccChhhHHHHHHHHHhcCChHHHH
Q 047992 199 LAVYVKCGKLIWARRFFESMDEKDGVAWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQLGQCDVAM 278 (868)
Q Consensus 199 i~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 278 (868)
|.|++.+ ++-+...++..++..||.|+++-...+.|.+++.+-.....+.+..+||.+|.+-+-..+ .
T Consensus 191 -----K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K 258 (625)
T KOG4422|consen 191 -----KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----K 258 (625)
T ss_pred -----ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----H
Confidence 3455544 444555567789999999999999999999999999998889999999999987554333 7
Q ss_pred HHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhH----HHHHHHHHHhCCccCCcccHHHHHHHHhchhhHHH-HHHHHHH
Q 047992 279 EMVKRMESLGITPDVFTWTCMISGFAQNGRTSQ----ALDLFKEMSFVGVMPNGVTITSAISACTDLKALAM-GMEIHSL 353 (868)
Q Consensus 279 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~----A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~-a~~i~~~ 353 (868)
+++.+|.+....||..|+|+++++..+.|+++. |++++.+|.+.|+.|...+|..+|..+.+.++..+ +..+...
T Consensus 259 ~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~d 338 (625)
T KOG4422|consen 259 KLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIND 338 (625)
T ss_pred HHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHH
Confidence 889999999999999999999999999998764 56788889999999999999888887777666543 1111111
Q ss_pred HHH----hCCCCCccHHHHHHHHHHcCCCHHHHHHHHHhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCe
Q 047992 354 AVK----MGFTDDVLVGNSLINMYSKCEELEAAERVFDMIKDKDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNV 429 (868)
Q Consensus 354 ~~~----~g~~~~~~~~~~li~~y~~~g~~~~A~~vf~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 429 (868)
+.. ..+.|-.. . |.
T Consensus 339 I~N~ltGK~fkp~~p---------------------------~-----------------------------------d~ 356 (625)
T KOG4422|consen 339 IQNSLTGKTFKPITP---------------------------T-----------------------------------DN 356 (625)
T ss_pred HHHhhccCcccCCCC---------------------------c-----------------------------------hh
Confidence 111 11111110 0 11
Q ss_pred eehhhHHHHHHhcCCHHHHHHHHHhcccCCC---CCCC---eeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhH
Q 047992 430 ITWNVLISGYIQNGNEDEAVDLFQRMGKNDK---VKRN---TASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTI 503 (868)
Q Consensus 430 ~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~---~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 503 (868)
..|...+..|....+.+-|.++-.-.....+ +.|+ ..-|..+....++....+.-+..|..|.-.-+-|+..+.
T Consensus 357 ~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m 436 (625)
T KOG4422|consen 357 KFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTM 436 (625)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhH
Confidence 1122222222233333333332222211100 1111 123444556666677777777777777777778888888
Q ss_pred HHHHHHHhchhchHHHHHHHHHHHHhC
Q 047992 504 LSVLPACAYLVASNKVKEIHGCVLRRS 530 (868)
Q Consensus 504 ~~ll~a~~~~~~~~~~~~i~~~~~~~~ 530 (868)
..+++|....+.++....++...+..|
T Consensus 437 ~~~lrA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 437 IHLLRALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred HHHHHHHhhcCcchhHHHHHHHHHHhh
Confidence 888888777777777777766665544
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.1e-11 Score=130.53 Aligned_cols=358 Identities=15% Similarity=0.174 Sum_probs=236.0
Q ss_pred HHHHhCCChhHHHHHHHHHhhcCCCCCcccHHHHHHHHhccCChHHHHHHHHHhhhcCCCChhhhhHHHHHHHhcCChhH
Q 047992 30 DFLCGNGRLNEAITVLDSIATQGAKVRRNTYINLLQACIDSNSIHLARKLHAFLNLVTEIDVFVKTKLLSVYAKCGCLDD 109 (868)
Q Consensus 30 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 109 (868)
+.+...|+.++|.+++..+.+... .+...|..|-..+-+.|+...+....-.+.+-.+.|...|..+.....+.|.++.
T Consensus 147 N~lfarg~~eeA~~i~~EvIkqdp-~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~q 225 (895)
T KOG2076|consen 147 NNLFARGDLEEAEEILMEVIKQDP-RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQ 225 (895)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHH
Confidence 445556999999999999888764 3667888888888888999888776554455556677889999999999999999
Q ss_pred HHHHHhhcCCCCceeHHH---HHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHhhCCCChHHHHHHHHHHHHh
Q 047992 110 AREVFEDMRERNLYTWSA---MIGAYSRDQRWREVVELFFLMVQDGLFPDDFLFPKILQACGNCGDFEAGKLMHSLVIKL 186 (868)
Q Consensus 110 A~~~f~~~~~~~~~~~~~---li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 186 (868)
|+-.|.+..+.+..-|-. -+..|-+.|+...|...|.++.+..- |... +.+++.+.
T Consensus 226 A~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p-~~d~------------------er~~d~i~-- 284 (895)
T KOG2076|consen 226 ARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP-PVDI------------------ERIEDLIR-- 284 (895)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC-chhH------------------HHHHHHHH--
Confidence 999999887644433333 34567788999999999999876422 2111 11111110
Q ss_pred CCCCCcchHHHHHHHHHHcCChHHHHHHHhhcCC--C---ChhhHHHHHHHHHhcCChhHHHHHHHHHHHc---------
Q 047992 187 GMSCVRRVRNSVLAVYVKCGKLIWARRFFESMDE--K---DGVAWNSMISGYFQIGENDEAHRLFDKMCRE--------- 252 (868)
Q Consensus 187 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--------- 252 (868)
..++.|...++-+.|.+.++.... . +...+|.++..|.+...++.|......+...
T Consensus 285 ----------~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~ 354 (895)
T KOG2076|consen 285 ----------RVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEW 354 (895)
T ss_pred ----------HHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhh
Confidence 112223333333444444444332 1 2334556666666666666666666555541
Q ss_pred ------------------CCccChhhHHHHHHHHHhcCChHHHHHHHHHHHhcC--CCCCeeeHHHHHHHHHhcCChhHH
Q 047992 253 ------------------EIKLGVVTFNILIRSYNQLGQCDVAMEMVKRMESLG--ITPDVFTWTCMISGFAQNGRTSQA 312 (868)
Q Consensus 253 ------------------g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~A 312 (868)
++.++..++ -++-++.+....+....+...+.+.. +.-+...|.-+..+|.+.|++.+|
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~A 433 (895)
T KOG2076|consen 355 DTDERRREEPNALCEVGKELSYDLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEA 433 (895)
T ss_pred hhhhhccccccccccCCCCCCccchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHH
Confidence 122233331 12222333333444444444444444 444667788888999999999999
Q ss_pred HHHHHHHHhCCccCCcccHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHcCCCHHHHHHHHHhcCCC
Q 047992 313 LDLFKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEELEAAERVFDMIKDK 392 (868)
Q Consensus 313 ~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~vf~~~~~~ 392 (868)
+.+|..+......-+...|..+..++-.++..+.|.+.+..++... +.+..+--.|-..|.+.|+.++|.+.+..+..+
T Consensus 434 l~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~ 512 (895)
T KOG2076|consen 434 LRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINP 512 (895)
T ss_pred HHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCC
Confidence 9999998766555566778888888889999999999998888765 445667778888999999999999999998766
Q ss_pred Cee-----hH-------HHHHHHHHhcCChhHHHHHHHHhH
Q 047992 393 DVY-----SW-------NSMIAGYCQAGYCGKAYELFIKMQ 421 (868)
Q Consensus 393 ~~~-----~~-------~~li~~~~~~g~~~~A~~l~~~m~ 421 (868)
|.. .| -.....+.+.|+.++-+..-..|.
T Consensus 513 D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv 553 (895)
T KOG2076|consen 513 DGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLV 553 (895)
T ss_pred CccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 522 11 223455677788777666666665
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.3e-10 Score=128.04 Aligned_cols=183 Identities=14% Similarity=0.179 Sum_probs=93.1
Q ss_pred CChhHHHHHHhhcCC---CCceeHHHHHHHHHhCCChhHHHHHHHHhHHCCCCC-CcchHHHHHHHhhCCCChHHHHHHH
Q 047992 105 GCLDDAREVFEDMRE---RNLYTWSAMIGAYSRDQRWREVVELFFLMVQDGLFP-DDFLFPKILQACGNCGDFEAGKLMH 180 (868)
Q Consensus 105 g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~ 180 (868)
|++++|.+++.++.. ++...|..|-..|-+.|+.++++..+-..- -..| |...|..+-.-....|++..|.-.+
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAA--HL~p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAA--HLNPKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHH--hcCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 777777777777653 334567777777777777766665543322 1222 2233444444444455555555555
Q ss_pred HHHHHhCCCCCcchHHHHHHHHHHcCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCccChhh
Q 047992 181 SLVIKLGMSCVRRVRNSVLAVYVKCGKLIWARRFFESMDEKDGVAWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVT 260 (868)
Q Consensus 181 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~ 260 (868)
..+++... ++....-.-..+|- +.|+...|.+.|.++.....+.|..-
T Consensus 231 ~rAI~~~p-~n~~~~~ers~L~~-------------------------------~~G~~~~Am~~f~~l~~~~p~~d~er 278 (895)
T KOG2076|consen 231 SRAIQANP-SNWELIYERSSLYQ-------------------------------KTGDLKRAMETFLQLLQLDPPVDIER 278 (895)
T ss_pred HHHHhcCC-cchHHHHHHHHHHH-------------------------------HhChHHHHHHHHHHHHhhCCchhHHH
Confidence 55555442 22222222333444 44555555555555544332222222
Q ss_pred HHH----HHHHHHhcCChHHHHHHHHHHHhc-CCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047992 261 FNI----LIRSYNQLGQCDVAMEMVKRMESL-GITPDVFTWTCMISGFAQNGRTSQALDLFKEMSF 321 (868)
Q Consensus 261 ~~~----li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 321 (868)
+.. .++.+...++-+.|.+.++..... +-..+...++.++..|.+...++.|+.....+..
T Consensus 279 ~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~ 344 (895)
T KOG2076|consen 279 IEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRN 344 (895)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhc
Confidence 222 233344445555566555554442 2223455666777777777777777777766655
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1e-11 Score=125.23 Aligned_cols=171 Identities=20% Similarity=0.241 Sum_probs=144.3
Q ss_pred HHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCChHH
Q 047992 544 TYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR-GTFLSIILAHSLAGMVDL 619 (868)
Q Consensus 544 ~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~ 619 (868)
.|.+.|++++|+..|-++. ..++.....+.+.|-...+..+|++++.+... +-|+. ..+.-+...|-+.|+-.+
T Consensus 533 t~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~ilskl~dlydqegdksq 610 (840)
T KOG2003|consen 533 TAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAILSKLADLYDQEGDKSQ 610 (840)
T ss_pred cHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHHHHHHHhhcccchhh
Confidence 4678899999999998654 46777777888899999999999999988877 66655 666667778899999999
Q ss_pred HHHHHHHhhhhcCCCC-ChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHh
Q 047992 620 GKKVFCSITECYQIIP-MIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPDSSIWEALLTAC-RIHGNIDLAVLAIERLF 696 (868)
Q Consensus 620 a~~~~~~m~~~~~~~p-~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~~~~w~~ll~a~-~~~~~~~~a~~~~~~~~ 696 (868)
|.+++..- |..-| ++++...+...|....-.++|+.++++. -+.|+.+-|..++..| |+.||+..|...++.+.
T Consensus 611 afq~~yds---yryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~h 687 (840)
T KOG2003|consen 611 AFQCHYDS---YRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIH 687 (840)
T ss_pred hhhhhhhc---ccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 99876543 44444 6788888888888999999999999998 5899999999999988 67899999999999999
Q ss_pred ccCCCCchhHHHHHHHHhhcCCC
Q 047992 697 DLEPGDVLIQRLILQIYAICGKP 719 (868)
Q Consensus 697 ~l~p~~~~~~~~l~~~y~~~g~~ 719 (868)
..-|+|....-.|..+....|.-
T Consensus 688 rkfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 688 RKFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HhCccchHHHHHHHHHhccccch
Confidence 99999999999999998888754
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.3e-11 Score=130.72 Aligned_cols=604 Identities=13% Similarity=0.042 Sum_probs=351.2
Q ss_pred HHHHh-hhcCCCChhhhhHHHHHHHhcCChhHHHHHHhhcCCCC----ceeHHHHHHHHHhCCChhHHHHHHHHhHHCCC
Q 047992 79 LHAFL-NLVTEIDVFVKTKLLSVYAKCGCLDDAREVFEDMRERN----LYTWSAMIGAYSRDQRWREVVELFFLMVQDGL 153 (868)
Q Consensus 79 i~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~ 153 (868)
++..+ ..|..|+..+|..||..||..|+.+.|- +|.-|.-++ ...++.++.+..+.++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 34445 6889999999999999999999999998 888776543 346899999988888876654
Q ss_pred CCCcchHHHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHcCChHHHHHHHhhcC---CCChhhHHHHH
Q 047992 154 FPDDFLFPKILQACGNCGDFEAGKLMHSLVIKLGMSCVRRVRNSVLAVYVKCGKLIWARRFFESMD---EKDGVAWNSMI 230 (868)
Q Consensus 154 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~d~~~~~~li 230 (868)
.|.+.||..|+.+|...||+..-..+-..+ -.++..+...|....-..++-.+. .-.... ...+
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~fe~veqdL------------e~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda-~n~i 146 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLILFEVVEQDL------------ESINQSFSDHGVGSPERWFLMKIHCCPHSLPDA-ENAI 146 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHHHHHHHHHH------------HHHHhhhhhhccCcHHHHHHhhcccCcccchhH-HHHH
Confidence 688889999999999999976522222211 223333444454444444444322 111112 2234
Q ss_pred HHHHhcCChhHHHHHHHHHHHcC-CccChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcCCh
Q 047992 231 SGYFQIGENDEAHRLFDKMCREE-IKLGVVTFNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRT 309 (868)
Q Consensus 231 ~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 309 (868)
.-..-.|.++.+++++..|.... ..|..+ +++-.... .....++.+......-.|+..+|.+++.+-.-+|+.
T Consensus 147 lllv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~ 220 (1088)
T KOG4318|consen 147 LLLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDV 220 (1088)
T ss_pred HHHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCch
Confidence 44455667777777776665322 112111 12222221 222333333332222258999999999999999999
Q ss_pred hHHHHHHHHHHhCCccCCcccHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHcCCCHHHHHHHHHhc
Q 047992 310 SQALDLFKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEELEAAERVFDMI 389 (868)
Q Consensus 310 ~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~vf~~~ 389 (868)
+.|..++.+|.+.|++.+..-|..++-+ .++......+..-|...|+.|+..++.--+--..+.|....+....+.-
T Consensus 221 d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~ 297 (1088)
T KOG4318|consen 221 DGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLA 297 (1088)
T ss_pred hhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchh
Confidence 9999999999999999999888877765 7788888899999999999999999887777766655533322211110
Q ss_pred CCCCeehHHHHHHHHHhcCC-----hhHHHHHHHHhHhCCCCCCeeehhhHHHHHHhcCCHHHHHHHHHhcccC--CCCC
Q 047992 390 KDKDVYSWNSMIAGYCQAGY-----CGKAYELFIKMQESDVPPNVITWNVLISGYIQNGNEDEAVDLFQRMGKN--DKVK 462 (868)
Q Consensus 390 ~~~~~~~~~~li~~~~~~g~-----~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~f~~m~~~--~~~~ 462 (868)
.--....+..+..+...+.+ ..-....+++..-.|+......|...+.. ...|.-++..++-..+..- ....
T Consensus 298 hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt~r~s~ 376 (1088)
T KOG4318|consen 298 HGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDSG 376 (1088)
T ss_pred hhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCccccCc
Confidence 00011123333333211111 12222333333333444333444333322 2245555555555544210 0001
Q ss_pred CCeeehhhhHHHHHhc----------------------CChhHHHHHHHHhhcCCCCCCHH-------------------
Q 047992 463 RNTASWNSLIAGYQQL----------------------GQKNNALGVFRKMQSSCFYPNCV------------------- 501 (868)
Q Consensus 463 ~~~~~~~~li~~~~~~----------------------g~~~~A~~~~~~m~~~g~~p~~~------------------- 501 (868)
.++..+..+..-|.+. ....+..++... ..||..
T Consensus 377 ~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~-----lrkns~lr~lv~Lss~Eler~he~~ 451 (1088)
T KOG4318|consen 377 QNVDAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLEN-----LRKNSFLRQLVGLSSTELERSHEPW 451 (1088)
T ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHH-----hCcchHHHHHhhhhHHHHhcccccc
Confidence 1122222222222111 111111111111 122211
Q ss_pred ---------hHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCc------
Q 047992 502 ---------TILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMSSKDI------ 566 (868)
Q Consensus 502 ---------t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~d~------ 566 (868)
.-..++-+|.+.-+..++.+.-+.....-+ ...|..||+....-..+++|....+++..+|.
T Consensus 452 ~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~ 528 (1088)
T KOG4318|consen 452 PLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDL 528 (1088)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhccc
Confidence 112222333333333333322222222111 25688999999999999999999999987754
Q ss_pred eecHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCC-HHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHH
Q 047992 567 ITWNSLICGYVLHGFWHAALDLFDQMKSFG-LKPN-RGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMI 644 (868)
Q Consensus 567 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv 644 (868)
.-+..+...+.+++....+..++++|.+.- ..|+ ..++-.+++.-...|+.+.-.+.++-+.. +|+.-+ .-++
T Consensus 529 ~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvs-lgl~et----gPl~ 603 (1088)
T KOG4318|consen 529 PLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVS-LGLSET----GPLW 603 (1088)
T ss_pred HhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHH-hhhhhc----ccce
Confidence 357788888999999999999999998743 3343 47778888888899999888888887665 454332 3344
Q ss_pred HhhhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhc--CCHHHH------HHHHHHH---------hc--------
Q 047992 645 DLYGRSGKLEEAMEFIEDM--PIEPDSSIWEALLTACRIH--GNIDLA------VLAIERL---------FD-------- 697 (868)
Q Consensus 645 d~l~r~g~~~eA~~~i~~~--~~~p~~~~w~~ll~a~~~~--~~~~~a------~~~~~~~---------~~-------- 697 (868)
...-|.++...|.+..+.- ..+|.+.....+....+++ -+++.+ +..+.+. ++
T Consensus 604 ~vhLrkdd~s~a~ea~e~~~qkyk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di~etpG~r~r~ 683 (1088)
T KOG4318|consen 604 MVHLRKDDQSAAQEAPEPEEQKYKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITETPGVRCRN 683 (1088)
T ss_pred EEEeeccchhhhhhcchHHHHHhcCChHHHHHHHHHHHhhccccHHHHHhhcchhHHHHhcccccchhhccccCcccccC
Confidence 5556777777777665543 3445444444444444322 122222 2211111 11
Q ss_pred ----------cCC--------CCchhHHHHHHHHhhcCCChhHHHHHHHHH
Q 047992 698 ----------LEP--------GDVLIQRLILQIYAICGKPEDALKVRKLER 730 (868)
Q Consensus 698 ----------l~p--------~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 730 (868)
+.| +..+..+-|-..|-..|+|+.|..++.+|.
T Consensus 684 ~RDr~~de~e~~~lEll~elt~~lg~~dRLL~sy~~~g~~erA~glwnK~Q 734 (1088)
T KOG4318|consen 684 GRDRDTDEGEIVPLELLLELTHELGKNDRLLQSYLEEGRIERASGLWNKDQ 734 (1088)
T ss_pred CCccccccCccccHHHHHHHHhHhHHHHHHHHHHHhhhHHHHHHhHHhhCc
Confidence 000 122344557778999999999999998875
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.6e-14 Score=145.18 Aligned_cols=256 Identities=18% Similarity=0.234 Sum_probs=111.6
Q ss_pred hHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhch
Q 047992 434 VLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYL 513 (868)
Q Consensus 434 ~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 513 (868)
.+...+.+.|++++|+++++........+.+...|..+.......++.++|.+.++++...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~------------------ 74 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD------------------ 74 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc------------------
Confidence 34555666667777776664433222123344555555555555666666666666554321
Q ss_pred hchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC--CCCceecHHHHHHHHhcCChHHHHHHHHH
Q 047992 514 VASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMS--SKDIITWNSLICGYVLHGFWHAALDLFDQ 591 (868)
Q Consensus 514 ~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~--~~d~~~~~~li~~~~~~g~~~~A~~l~~~ 591 (868)
-. ++..+..++.. ...|+.++|.+++...- .++...|..++..+...|+++++.+++++
T Consensus 75 -----------------~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~ 135 (280)
T PF13429_consen 75 -----------------KA-NPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEK 135 (280)
T ss_dssp --------------------------------------------------------------H-HHHTT-HHHHHHHHHH
T ss_pred -----------------cc-ccccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHH
Confidence 11 34445566666 57888889988887653 45677888888999999999999999999
Q ss_pred HHHCC-CCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCC-hhHHHHHHHhhhhcCChHHHHHHHHhC--CCCC
Q 047992 592 MKSFG-LKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPM-IEHYSAMIDLYGRSGKLEEAMEFIEDM--PIEP 667 (868)
Q Consensus 592 m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lvd~l~r~g~~~eA~~~i~~~--~~~p 667 (868)
+.... .+++...|..+...+.+.|+.++|...++...+ ..|+ ......++.++...|+.+++.++++.. ..++
T Consensus 136 ~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~---~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~ 212 (280)
T PF13429_consen 136 LEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALE---LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPD 212 (280)
T ss_dssp HHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHH---H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HT
T ss_pred HHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcC
Confidence 87643 234556667777788899999999999999887 3454 566788999999999999988888776 2245
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHH
Q 047992 668 DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLE 729 (868)
Q Consensus 668 ~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 729 (868)
|+..|..+..++...|+.+.|...++++++..|+|+.....++.++...|+.++|.++|+..
T Consensus 213 ~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 213 DPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp SCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT---------------
T ss_pred HHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 66689999999999999999999999999999999999999999999999999999998754
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.2e-09 Score=111.48 Aligned_cols=356 Identities=13% Similarity=0.153 Sum_probs=203.4
Q ss_pred ccChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcccHH--
Q 047992 255 KLGVVTFNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTIT-- 332 (868)
Q Consensus 255 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~-- 332 (868)
.-|...+-...-.+-+.|....|+..|...... -+..|.+.+...--.-+.+.+..+- .+.+.|...+.
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~~e~~~~l~-----~~l~~~~h~M~~~ 231 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITDIEILSILV-----VGLPSDMHWMKKF 231 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhchHHHHHHHH-----hcCcccchHHHHH
Confidence 334444444444556678888888888887754 3445555444333222222222221 22222222221
Q ss_pred HHHHHHhchhhHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHcCCCHHHHHHHHHhcCCCCe------ehHHHHHHHHHh
Q 047992 333 SAISACTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEELEAAERVFDMIKDKDV------YSWNSMIAGYCQ 406 (868)
Q Consensus 333 ~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~vf~~~~~~~~------~~~~~li~~~~~ 406 (868)
.+..++....+.+++.+-.......|++.....-+.....+-...+++.|+.+|+.+...|+ .+|+..+ |.+
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~ 309 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVK 309 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHH
Confidence 24456677778888888888888889888888777777777788899999999998886533 3444443 222
Q ss_pred cCChhHHHHHHHHhHhCCCCCCeeehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHH
Q 047992 407 AGYCGKAYELFIKMQESDVPPNVITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALG 486 (868)
Q Consensus 407 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 486 (868)
+.+.. +..+.+-...=-+--+.|...+.+-|+-.++.+.|...|++..+.+ |.....|+.|..-|...++...|.+
T Consensus 310 ~~~sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN--p~~~~aWTLmGHEyvEmKNt~AAi~ 385 (559)
T KOG1155|consen 310 NDKSK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN--PKYLSAWTLMGHEYVEMKNTHAAIE 385 (559)
T ss_pred hhhHH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC--cchhHHHHHhhHHHHHhcccHHHHH
Confidence 22111 1111111100002233455566666777777777777777776654 5556667777777777777777777
Q ss_pred HHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC---C
Q 047992 487 VFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMS---S 563 (868)
Q Consensus 487 ~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~ 563 (868)
-++...+ +.| .|-..|-.|.++|.-.+...-|+-.|++.. +
T Consensus 386 sYRrAvd--i~p----------------------------------~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kP 429 (559)
T KOG1155|consen 386 SYRRAVD--INP----------------------------------RDYRAWYGLGQAYEIMKMHFYALYYFQKALELKP 429 (559)
T ss_pred HHHHHHh--cCc----------------------------------hhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCC
Confidence 7766643 111 144455566666666666666666666432 4
Q ss_pred CCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhc---C-CCC-Chh
Q 047992 564 KDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECY---Q-IIP-MIE 638 (868)
Q Consensus 564 ~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~-~~p-~~~ 638 (868)
.|...|.+|...|.+.++.++|++-|.+....|- .+...+..+...+-..++.++|.++|..-.+.. | +.| ..+
T Consensus 430 nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~k 508 (559)
T KOG1155|consen 430 NDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIK 508 (559)
T ss_pred CchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHH
Confidence 5666666666666666666666666666665432 244556666666666666666666666544432 1 222 222
Q ss_pred HHHHHHHhhhhcCChHHHHHHHHh
Q 047992 639 HYSAMIDLYGRSGKLEEAMEFIED 662 (868)
Q Consensus 639 ~y~~lvd~l~r~g~~~eA~~~i~~ 662 (868)
...-+..-+-+.+++++|..+...
T Consensus 509 a~~fLA~~f~k~~~~~~As~Ya~~ 532 (559)
T KOG1155|consen 509 ARLFLAEYFKKMKDFDEASYYATL 532 (559)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHH
Confidence 222233444455566665554443
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.7e-10 Score=114.50 Aligned_cols=208 Identities=15% Similarity=0.151 Sum_probs=171.7
Q ss_pred hchHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHH
Q 047992 514 VASNKVKEIHGCVLRRSLES-SLPVMNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLF 589 (868)
Q Consensus 514 ~~~~~~~~i~~~~~~~~~~~-~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~ 589 (868)
|+...+.+-+..+++ +.| ++..|--+..+|....+-++-.+.|+... +.|...|---...+.-.+++++|+.=|
T Consensus 340 g~~~~a~~d~~~~I~--l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 340 GDSLGAQEDFDAAIK--LDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred CCchhhhhhHHHHHh--cCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 666777777777777 444 34447777888999999999999998654 556777777777777888999999999
Q ss_pred HHHHHCCCCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCC
Q 047992 590 DQMKSFGLKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP 667 (868)
Q Consensus 590 ~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p 667 (868)
++.+. +.|+. ..|..+-.+..+.+.+++....|+..++++.- .++.|+-....|.-.++++.|.+.++.. .++|
T Consensus 418 ~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~--~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 418 QKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPN--CPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred HHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--CchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 99998 88876 78888888888999999999999999986544 4566888999999999999999999987 4555
Q ss_pred C---------HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHH
Q 047992 668 D---------SSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKL 728 (868)
Q Consensus 668 ~---------~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 728 (868)
+ +.+..+++-.- -.+|+..|+...++++++||...-+|..|+.+-...|+.++|.++.+.
T Consensus 494 ~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEk 562 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEK 562 (606)
T ss_pred ccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4 34555555443 349999999999999999999999999999999999999999998654
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.6e-09 Score=108.10 Aligned_cols=488 Identities=14% Similarity=0.136 Sum_probs=293.3
Q ss_pred cCChHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCccCh-hhHHHHHHHHHhcCChHHHHHH
Q 047992 205 CGKLIWARRFFESMDE---KDGVAWNSMISGYFQIGENDEAHRLFDKMCREEIKLGV-VTFNILIRSYNQLGQCDVAMEM 280 (868)
Q Consensus 205 ~g~~~~A~~~f~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~ 280 (868)
.+++..|+.+|++... ++...|--.+..=.++..+..|..++++.... -|-+ ..|-.-+.+=-..|++..|.++
T Consensus 86 q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHHHH
Confidence 4566778888877654 35667777777777888888888888877653 2222 2344445555567888888888
Q ss_pred HHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcccHHHHHHHHhchhhHHHHHHHHHHHHHh-CC
Q 047992 281 VKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLAVKM-GF 359 (868)
Q Consensus 281 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-g~ 359 (868)
|+.-.+. .|+...|++.|.-=.+....+.|..+|++..- +.|+..+|..-.+.=.+.|+...++.++..+++. |-
T Consensus 164 ferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~ 239 (677)
T KOG1915|consen 164 FERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGD 239 (677)
T ss_pred HHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh
Confidence 8776654 67888888888888888888888888888753 4477777777777777778888888888777654 21
Q ss_pred -CCCccHHHHHHHHHHcCCCHHHHHHHHHhcCCC-----CeehHHHHHHHHHhcCC---hhHHHH-----HHHHhHhCCC
Q 047992 360 -TDDVLVGNSLINMYSKCEELEAAERVFDMIKDK-----DVYSWNSMIAGYCQAGY---CGKAYE-----LFIKMQESDV 425 (868)
Q Consensus 360 -~~~~~~~~~li~~y~~~g~~~~A~~vf~~~~~~-----~~~~~~~li~~~~~~g~---~~~A~~-----l~~~m~~~g~ 425 (868)
..+..++++....-.++..++.|.-+|+-..+. ....|.....---+-|+ .++++- -++.+.+.+
T Consensus 240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n- 318 (677)
T KOG1915|consen 240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN- 318 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-
Confidence 122335555555666677788888777654431 12223333333333344 223322 233333333
Q ss_pred CCCeeehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCC--eeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhH
Q 047992 426 PPNVITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRN--TASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTI 503 (868)
Q Consensus 426 ~p~~~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 503 (868)
+.|-.+|--.+..-...|+.+...++|++....- ||- -..|...|-....- .+|.+
T Consensus 319 p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv--pp~~ekr~W~RYIYLWinY-------alyeE------------- 376 (677)
T KOG1915|consen 319 PYNYDSWFDYLRLEESVGDKDRIRETYERAIANV--PPASEKRYWRRYIYLWINY-------ALYEE------------- 376 (677)
T ss_pred CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC--CchhHHHHHHHHHHHHHHH-------HHHHH-------------
Confidence 4455666666666666677777777777665542 331 12333333222110 00000
Q ss_pred HHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHH----HhcCCHHHHHHHHhcCC--CCCceecHHHHHHHH
Q 047992 504 LSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTY----AKSGNIVYSRTIFDGMS--SKDIITWNSLICGYV 577 (868)
Q Consensus 504 ~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y----~k~g~~~~A~~~f~~~~--~~d~~~~~~li~~~~ 577 (868)
....+.+..++++...++ -++...+++.-+=-|| .++-++..|++++-... .|-...+...|..-.
T Consensus 377 -------le~ed~ertr~vyq~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelEl 448 (677)
T KOG1915|consen 377 -------LEAEDVERTRQVYQACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELEL 448 (677)
T ss_pred -------HHhhhHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHH
Confidence 122344444555544444 1222333333333333 34566666666665433 244445555666666
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHH
Q 047992 578 LHGFWHAALDLFDQMKSFGLKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEA 656 (868)
Q Consensus 578 ~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA 656 (868)
+.+.++....++++.++ ..|.. .+|.....--...|+.|.|+.+|+...+...+.--.-.+-..||.-...|.++.|
T Consensus 449 qL~efDRcRkLYEkfle--~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~eka 526 (677)
T KOG1915|consen 449 QLREFDRCRKLYEKFLE--FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKA 526 (677)
T ss_pred HHhhHHHHHHHHHHHHh--cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHH
Confidence 77777777777777777 55643 6676666666677888888888887766433322233566777777788888888
Q ss_pred HHHHHhC-CCCCCHHHHHHHHHHHH-----hcC-----------CHHHHHHHHHHHhc----cCCCCchhHH--HHHHHH
Q 047992 657 MEFIEDM-PIEPDSSIWEALLTACR-----IHG-----------NIDLAVLAIERLFD----LEPGDVLIQR--LILQIY 713 (868)
Q Consensus 657 ~~~i~~~-~~~p~~~~w~~ll~a~~-----~~~-----------~~~~a~~~~~~~~~----l~p~~~~~~~--~l~~~y 713 (868)
.+++++. .-.+...+|-+...--. ..+ ++..|..+++++.. .+|....... .+-|+-
T Consensus 527 R~LYerlL~rt~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E 606 (677)
T KOG1915|consen 527 RALYERLLDRTQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNME 606 (677)
T ss_pred HHHHHHHHHhcccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 8888877 33444557777654322 233 67788888888764 4554333322 345566
Q ss_pred hhcCCChhHHHHHHHHHh
Q 047992 714 AICGKPEDALKVRKLERE 731 (868)
Q Consensus 714 ~~~g~~~~a~~~~~~m~~ 731 (868)
..-|.-.+...|.+.|-.
T Consensus 607 ~~~G~~~d~~~V~s~mPk 624 (677)
T KOG1915|consen 607 ETFGTEGDVERVQSKMPK 624 (677)
T ss_pred HhcCchhhHHHHHHhccH
Confidence 777888888888888853
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=6e-11 Score=129.62 Aligned_cols=286 Identities=12% Similarity=0.019 Sum_probs=180.7
Q ss_pred CCCHHHHHHHHHhcCCC--C-eehHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCeeehh--hHHHHHHhcCCHHHHHH
Q 047992 376 CEELEAAERVFDMIKDK--D-VYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWN--VLISGYIQNGNEDEAVD 450 (868)
Q Consensus 376 ~g~~~~A~~vf~~~~~~--~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~--~li~~~~~~g~~~~A~~ 450 (868)
.|+++.|++.+....+. + ...+-.......+.|+++.|.+.|.++.+. .|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 58888888877765543 1 222322334447788888898888888764 44543332 33567888999999999
Q ss_pred HHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhC
Q 047992 451 LFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRS 530 (868)
Q Consensus 451 ~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~ 530 (868)
.++.+.+.. |.++.....+...|.+.|++++|.+++..+.+.+..++.. ...+-.
T Consensus 175 ~l~~~~~~~--P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~-~~~l~~---------------------- 229 (398)
T PRK10747 175 GVDKLLEVA--PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEH-RAMLEQ---------------------- 229 (398)
T ss_pred HHHHHHhcC--CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHH-HHHHHH----------------------
Confidence 999987765 6667778888899999999999999999988766543221 110000
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 047992 531 LESSLPVMNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSI 607 (868)
Q Consensus 531 ~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 607 (868)
..+..++....+..+.+...++++.++ ++++..+..+..++...|+.++|.+++++..+ ..||.. ..+
T Consensus 230 -----~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~--~~~~~~--l~~ 300 (398)
T PRK10747 230 -----QAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK--RQYDER--LVL 300 (398)
T ss_pred -----HHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHH--HHH
Confidence 011112222222233444455555443 23555666666667777777777777776666 334431 112
Q ss_pred HHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHH
Q 047992 608 ILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPDSSIWEALLTACRIHGNID 686 (868)
Q Consensus 608 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~~~~w~~ll~a~~~~~~~~ 686 (868)
+.+....|+.+++++..+...+.++-.| +.+.++..++.+.|++++|.+.++++ ...|+...+..|..++...|+.+
T Consensus 301 l~~~l~~~~~~~al~~~e~~lk~~P~~~--~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~ 378 (398)
T PRK10747 301 LIPRLKTNNPEQLEKVLRQQIKQHGDTP--LLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPE 378 (398)
T ss_pred HHhhccCCChHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHH
Confidence 3333344677777777777666443333 34666777777777777777777776 56677777777777777777777
Q ss_pred HHHHHHHHHhccC
Q 047992 687 LAVLAIERLFDLE 699 (868)
Q Consensus 687 ~a~~~~~~~~~l~ 699 (868)
.|...+++.+++-
T Consensus 379 ~A~~~~~~~l~~~ 391 (398)
T PRK10747 379 EAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHhhh
Confidence 7777777777654
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.7e-08 Score=103.31 Aligned_cols=423 Identities=12% Similarity=0.108 Sum_probs=212.4
Q ss_pred hCCChhHHHHHHHHHhhcCCCCCcccHHHHHHHHhccCChHHHHHHHHHhhhcCCCChhhhhHHHHHHHhcCChhHHHHH
Q 047992 34 GNGRLNEAITVLDSIATQGAKVRRNTYINLLQACIDSNSIHLARKLHAFLNLVTEIDVFVKTKLLSVYAKCGCLDDAREV 113 (868)
Q Consensus 34 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 113 (868)
.++....|..+|++.+.-.. -+...+..-+..-.+.+.+..|+.++++..+-++.-..++...+.+=-..|++..|+++
T Consensus 85 sq~e~~RARSv~ERALdvd~-r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDY-RNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred hHHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHH
Confidence 34444456666666654432 13333444444444566777777777777333444445566666666677788888888
Q ss_pred HhhcC--CCCceeHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHhhCCCChHHHHHHHHHHHHh-CCC-
Q 047992 114 FEDMR--ERNLYTWSAMIGAYSRDQRWREVVELFFLMVQDGLFPDDFLFPKILQACGNCGDFEAGKLMHSLVIKL-GMS- 189 (868)
Q Consensus 114 f~~~~--~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~- 189 (868)
|+.-. +|+...|++.|.-=.+.+.++.|.++|++..- +.|+..+|.--.+-=-+.|....+++++..++.. |-+
T Consensus 164 ferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~ 241 (677)
T KOG1915|consen 164 FERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDE 241 (677)
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHH
Confidence 87643 57777888888777777777888888877764 3477777766666666777777777777776653 210
Q ss_pred CCcchHHHHHHHHHHcCChHHHHHHHhh----cCCCC-hhhHHHHHHHHHhcCCh---hHHHHHHHHHHHcCCccChhhH
Q 047992 190 CVRRVRNSVLAVYVKCGKLIWARRFFES----MDEKD-GVAWNSMISGYFQIGEN---DEAHRLFDKMCREEIKLGVVTF 261 (868)
Q Consensus 190 ~~~~~~~~li~~y~~~g~~~~A~~~f~~----~~~~d-~~~~~~li~~~~~~g~~---~~A~~l~~~m~~~g~~p~~~~~ 261 (868)
.+..++++....=.++..++.|+-+|.- +|... ...|......=-+.|+. ++++--=+++
T Consensus 242 ~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~------------ 309 (677)
T KOG1915|consen 242 EAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKF------------ 309 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhh------------
Confidence 1112223333333344555555555432 22221 12222222222222322 2221111111
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcc-------cHHHH
Q 047992 262 NILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGV-------TITSA 334 (868)
Q Consensus 262 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-------t~~~l 334 (868)
-++.+.+.++- |-.+|--.+..--..|+.+...++|++.. .+++|-.. .|.-+
T Consensus 310 ------------------qYE~~v~~np~-nYDsWfdylrL~e~~g~~~~Ire~yErAI-anvpp~~ekr~W~RYIYLWi 369 (677)
T KOG1915|consen 310 ------------------QYEKEVSKNPY-NYDSWFDYLRLEESVGDKDRIRETYERAI-ANVPPASEKRYWRRYIYLWI 369 (677)
T ss_pred ------------------HHHHHHHhCCC-CchHHHHHHHHHHhcCCHHHHHHHHHHHH-ccCCchhHHHHHHHHHHHHH
Confidence 11222222221 44444444444444455555555555444 33433211 11111
Q ss_pred HHHH---hchhhHHHHHHHHHHHHHhCCCCCccHHHHHHHHHH----cCCCHHHHHHHHHhcCC--CCeehHHHHHHHHH
Q 047992 335 ISAC---TDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYS----KCEELEAAERVFDMIKD--KDVYSWNSMIAGYC 405 (868)
Q Consensus 335 l~a~---~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~----~~g~~~~A~~vf~~~~~--~~~~~~~~li~~~~ 405 (868)
=-+| ....+.+.+++++...++ -++...+++..+=-+|+ ++.++..|++++..... |-...+...|..-.
T Consensus 370 nYalyeEle~ed~ertr~vyq~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelEl 448 (677)
T KOG1915|consen 370 NYALYEELEAEDVERTRQVYQACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELEL 448 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHH
Confidence 1111 223455555555555554 22333344443333332 34555555555544332 33344444555555
Q ss_pred hcCChhHHHHHHHHhHhCCCCCCeeehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHH
Q 047992 406 QAGYCGKAYELFIKMQESDVPPNVITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNAL 485 (868)
Q Consensus 406 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 485 (868)
+.+.++.+..+++..++-+ +-|..+|......=...|+.+.|..+|+-.............|.+.|+--...|.++.|.
T Consensus 449 qL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR 527 (677)
T KOG1915|consen 449 QLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKAR 527 (677)
T ss_pred HHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHH
Confidence 5555555555555555554 334555555555555556666666666655554433333445555555555566666666
Q ss_pred HHHHHhhc
Q 047992 486 GVFRKMQS 493 (868)
Q Consensus 486 ~~~~~m~~ 493 (868)
.+++++++
T Consensus 528 ~LYerlL~ 535 (677)
T KOG1915|consen 528 ALYERLLD 535 (677)
T ss_pred HHHHHHHH
Confidence 66665543
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1e-10 Score=118.04 Aligned_cols=452 Identities=15% Similarity=0.158 Sum_probs=252.5
Q ss_pred hhCCCChHHHHHHHHHHHHhCCCCCcc-hHHHHHHHHHHcCChHHHHHHHhhc----CCC----ChhhHHHHHHHHHhcC
Q 047992 167 CGNCGDFEAGKLMHSLVIKLGMSCVRR-VRNSVLAVYVKCGKLIWARRFFESM----DEK----DGVAWNSMISGYFQIG 237 (868)
Q Consensus 167 ~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~y~~~g~~~~A~~~f~~~----~~~----d~~~~~~li~~~~~~g 237 (868)
+.......+|...++.+++...-|+.- .--.+.+.|.+...+..|.+++.-. |.- -....|.+--.|.+.|
T Consensus 211 y~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~g 290 (840)
T KOG2003|consen 211 YEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAG 290 (840)
T ss_pred hhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecc
Confidence 333444556666666666665444432 2223445566777777777776543 221 1224555666778889
Q ss_pred ChhHHHHHHHHHHHcCCccChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCeee--------HHHHHHHHHhcC--
Q 047992 238 ENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFT--------WTCMISGFAQNG-- 307 (868)
Q Consensus 238 ~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~--------~~~li~~~~~~g-- 307 (868)
.++.|+.-|+...+. .|+..+--.|+-.+.--|+-++..+.|.+|...-..||..- -..|+.--.++.
T Consensus 291 qy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~l 368 (840)
T KOG2003|consen 291 QYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHL 368 (840)
T ss_pred cchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHH
Confidence 999999988887764 57777666666666777888888888888876533332221 122222222221
Q ss_pred ---------ChhHHHHHHHHHHhCCccCCcccHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHcCCC
Q 047992 308 ---------RTSQALDLFKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEE 378 (868)
Q Consensus 308 ---------~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~ 378 (868)
+.++++-.-.++..--+.||-.. +| +.+.+.+..-.-..+..+..+ .-.-.|.+.|+
T Consensus 369 k~~ek~~ka~aek~i~ta~kiiapvi~~~fa~------g~------dwcle~lk~s~~~~la~dlei--~ka~~~lk~~d 434 (840)
T KOG2003|consen 369 KNMEKENKADAEKAIITAAKIIAPVIAPDFAA------GC------DWCLESLKASQHAELAIDLEI--NKAGELLKNGD 434 (840)
T ss_pred HHHHHhhhhhHHHHHHHHHHHhccccccchhc------cc------HHHHHHHHHhhhhhhhhhhhh--hHHHHHHhccC
Confidence 11222222222222222222110 00 111111111100000111111 11234678899
Q ss_pred HHHHHHHHHhcCCCCeehHHHHH-----HHHHhcC-ChhHHHHHHHHhHhCCCCCCeeehhhHH-----HHHHhcCCHHH
Q 047992 379 LEAAERVFDMIKDKDVYSWNSMI-----AGYCQAG-YCGKAYELFIKMQESDVPPNVITWNVLI-----SGYIQNGNEDE 447 (868)
Q Consensus 379 ~~~A~~vf~~~~~~~~~~~~~li-----~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~li-----~~~~~~g~~~~ 447 (868)
++.|.+++.-...+|..+-++.. --|.+.| ++..|.+.-+... +..-||.-. .....+|+++.
T Consensus 435 ~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~al------n~dryn~~a~~nkgn~~f~ngd~dk 508 (840)
T KOG2003|consen 435 IEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIAL------NIDRYNAAALTNKGNIAFANGDLDK 508 (840)
T ss_pred HHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHh------cccccCHHHhhcCCceeeecCcHHH
Confidence 99999888887776554433222 2233333 4666666666555 333443322 22234788888
Q ss_pred HHHHHHhcccCCCCCCCeeehhh---hHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHH
Q 047992 448 AVDLFQRMGKNDKVKRNTASWNS---LIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHG 524 (868)
Q Consensus 448 A~~~f~~m~~~~~~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~ 524 (868)
|.+.+++.... |...-.+ +.-.+-..|+.++|++.|-++..- +..+...+..+.+.+-.+.+..++.+++.
T Consensus 509 a~~~ykeal~n-----dasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~ 582 (840)
T KOG2003|consen 509 AAEFYKEALNN-----DASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLM 582 (840)
T ss_pred HHHHHHHHHcC-----chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 88888887543 2222222 223456778888888888776421 23344455555566666667777766665
Q ss_pred HHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcC-C--CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 047992 525 CVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGM-S--SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR 601 (868)
Q Consensus 525 ~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~-~--~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 601 (868)
.+.. -++.|+.+.+-|.+.|-+.|+-..|.+..-.- . +-|+.+..-+..-|.....+++|+..|++.-- ++|+.
T Consensus 583 q~~s-lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~ 659 (840)
T KOG2003|consen 583 QANS-LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQ 659 (840)
T ss_pred Hhcc-cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccH
Confidence 5544 14447888888888888888887777664322 1 34554444466667777777888888877766 77777
Q ss_pred HHHHHHHHHh-hccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcC
Q 047992 602 GTFLSIILAH-SLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSG 651 (868)
Q Consensus 602 ~t~~~ll~a~-~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g 651 (868)
+-|-.++..| .++|.+.+|...|+....+ .+.+++...-+|.+.+..|
T Consensus 660 ~kwqlmiasc~rrsgnyqka~d~yk~~hrk--fpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 660 SKWQLMIASCFRRSGNYQKAFDLYKDIHRK--FPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHh--CccchHHHHHHHHHhcccc
Confidence 7776665555 4567777777777766553 3445555555555555554
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.3e-10 Score=125.84 Aligned_cols=194 Identities=10% Similarity=-0.027 Sum_probs=119.5
Q ss_pred cCCCHHHHHHHHHhcCCC--C-eehHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCee--ehhhHHHHHHhcCCHHHHH
Q 047992 375 KCEELEAAERVFDMIKDK--D-VYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVI--TWNVLISGYIQNGNEDEAV 449 (868)
Q Consensus 375 ~~g~~~~A~~vf~~~~~~--~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~li~~~~~~g~~~~A~ 449 (868)
..|+++.|++.+....+. + ...+-.....+.+.|+.+.|.+.+.+..+.. |+.. .-......+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHHH
Confidence 467777777777665542 1 1223333455666788888888887776542 3432 2233466677788888888
Q ss_pred HHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHh
Q 047992 450 DLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRR 529 (868)
Q Consensus 450 ~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~ 529 (868)
..++.+.+.. |.+...+..+...+.+.|++++|.+++..+.+.++.+.......-..
T Consensus 174 ~~l~~l~~~~--P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~--------------------- 230 (409)
T TIGR00540 174 HGVDKLLEMA--PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQK--------------------- 230 (409)
T ss_pred HHHHHHHHhC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHH---------------------
Confidence 8888887765 55666777888888888888888888888877654322211010000
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 047992 530 SLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMSS---KDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRG 602 (868)
Q Consensus 530 ~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 602 (868)
.+..+++.-......+...+.++..+. ++...+..++..+...|+.++|++++++..+ ..||..
T Consensus 231 -------a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~--~~pd~~ 297 (409)
T TIGR00540 231 -------AEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK--KLGDDR 297 (409)
T ss_pred -------HHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh--hCCCcc
Confidence 011111111122233444455555543 4777788888888888888888888888888 456553
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.1e-08 Score=102.11 Aligned_cols=174 Identities=11% Similarity=0.188 Sum_probs=105.1
Q ss_pred hhhhhHHHHHHHhcCChhHHHHHHhhcCC-----CCceeHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHH
Q 047992 91 VFVKTKLLSVYAKCGCLDDAREVFEDMRE-----RNLYTWSAMIGAYSRDQRWREVVELFFLMVQDGLFPDDFLFPKILQ 165 (868)
Q Consensus 91 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~-----~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~ 165 (868)
+.++-..+....+.|++..-+..|+.... .....|.-.|.-....+-++-++.+|++.++ +.|.. -.--|.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk--~~P~~--~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK--VAPEA--REEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh--cCHHH--HHHHHH
Confidence 34565666666777777777777776432 2334577777766677777777777777764 23333 344455
Q ss_pred HhhCCCChHHHHHHHHHHHHh------CCCCCcchHHHHHHHHHHcCChH---HHHHHHhhcCCC--C--hhhHHHHHHH
Q 047992 166 ACGNCGDFEAGKLMHSLVIKL------GMSCVRRVRNSVLAVYVKCGKLI---WARRFFESMDEK--D--GVAWNSMISG 232 (868)
Q Consensus 166 ~~~~~~~~~~a~~~~~~~~~~------g~~~~~~~~~~li~~y~~~g~~~---~A~~~f~~~~~~--d--~~~~~~li~~ 232 (868)
.++..++++++.+.+..++.. ....+...|..+-+..++..+.- ....++..+..+ | ...|++|..-
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADY 257 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHH
Confidence 566677777777776655432 12345566666666666654332 233344444433 2 3468888888
Q ss_pred HHhcCChhHHHHHHHHHHHcCCccChhhHHHHHHHHHh
Q 047992 233 YFQIGENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQ 270 (868)
Q Consensus 233 ~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~ 270 (868)
|.+.|.++.|.++|++.... ..++.-|+.+.+.|+.
T Consensus 258 YIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~ 293 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQ 293 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHH
Confidence 88888888888888776653 2344445555555554
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.8e-10 Score=124.33 Aligned_cols=279 Identities=10% Similarity=0.056 Sum_probs=156.8
Q ss_pred cCChHHHHHHHhhcCCC--C-hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCccChhhH--HHHHHHHHhcCChHHHHH
Q 047992 205 CGKLIWARRFFESMDEK--D-GVAWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTF--NILIRSYNQLGQCDVAME 279 (868)
Q Consensus 205 ~g~~~~A~~~f~~~~~~--d-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~--~~li~~~~~~g~~~~A~~ 279 (868)
.|+++.|++.+...+.. + ...|........+.|+++.|.+.+.++.+. .|+.... ......+...|+.++|.+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 58888888888776554 1 223333344447889999999999998764 4444322 244678888999999999
Q ss_pred HHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcc-------cHHHHHHHHhchhhHHHHHHHHH
Q 047992 280 MVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGV-------TITSAISACTDLKALAMGMEIHS 352 (868)
Q Consensus 280 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-------t~~~ll~a~~~~~~~~~a~~i~~ 352 (868)
.++++.+..+. +......+...|.+.|++++|++++..+.+.+..++.. +|..++.......+.+...+++.
T Consensus 175 ~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99999888755 67788888999999999999999999998766543221 11111221112222222233332
Q ss_pred HHHHhCCCCCccHHHHHHHHHHcCCCHHHHHHHHHhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCeeeh
Q 047992 353 LAVKMGFTDDVLVGNSLINMYSKCEELEAAERVFDMIKDKDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITW 432 (868)
Q Consensus 353 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~vf~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 432 (868)
.+.+. .+.++.....+...+...|+.++|.++++...+.....--.++.+....++.+++++..+...+.. +-|...+
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~ 331 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLW 331 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhhC-CCCHHHH
Confidence 22111 123444555555555555555555555555443222111222333333455555555555555432 1122234
Q ss_pred hhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHh
Q 047992 433 NVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKM 491 (868)
Q Consensus 433 ~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 491 (868)
..+...+.+.+++++|.+.|+...+. .|+...+..+...+.+.|+.++|.+.+++-
T Consensus 332 l~lgrl~~~~~~~~~A~~~le~al~~---~P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 332 STLGQLLMKHGEWQEASLAFRAALKQ---RPDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44455555555555555555555442 344444455555555555555555555543
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.33 E-value=8.2e-11 Score=125.77 Aligned_cols=273 Identities=14% Similarity=0.096 Sum_probs=125.2
Q ss_pred CHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCC----CHHhHHHHHHHHhchhchHHH
Q 047992 444 NEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYP----NCVTILSVLPACAYLVASNKV 519 (868)
Q Consensus 444 ~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~~ll~a~~~~~~~~~~ 519 (868)
+..+|...|..+.... ..+......+..+|...+++++|..+|+...+. .| +..+|.++|--.-+. ++.+
T Consensus 334 ~~~~A~~~~~klp~h~--~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~--~p~rv~~meiyST~LWHLq~~--v~Ls 407 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHH--YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRI--EPYRVKGMEIYSTTLWHLQDE--VALS 407 (638)
T ss_pred HHHHHHHHHHhhHHhc--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccccccchhHHHHHHHHHHhh--HHHH
Confidence 4567777777754432 222233344556677777777777777766542 22 233444443221110 0000
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCC---CceecHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 047992 520 KEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMSSK---DIITWNSLICGYVLHGFWHAALDLFDQMKSFG 596 (868)
Q Consensus 520 ~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 596 (868)
. +-..+++ --+..+..|-++.++|+-+++.+.|.+.|++..+- ...+|+.+..-+.....++.|..-|+..+.
T Consensus 408 ~-Laq~Li~-~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~-- 483 (638)
T KOG1126|consen 408 Y-LAQDLID-TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG-- 483 (638)
T ss_pred H-HHHHHHh-hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--
Confidence 0 0000111 01123445555555555555555555555544322 233444444444444555555555555444
Q ss_pred CCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCCh-hHHHHHHHhhhhcCChHHHHHHHHhC-CCCCC-HHHH
Q 047992 597 LKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMI-EHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPD-SSIW 672 (868)
Q Consensus 597 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~-~~~w 672 (868)
+.|.+ ..|.++...|.+.++.+.|.-+|+...+ |.|.. ....|+...+-+.|+.|+|+++++++ .+.|. +..-
T Consensus 484 ~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~ 560 (638)
T KOG1126|consen 484 VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCK 560 (638)
T ss_pred CCchhhHHHHhhhhheeccchhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhH
Confidence 44443 4455555555555555555555554433 44432 22333444445555555555555554 22221 1111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHH
Q 047992 673 EALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLE 729 (868)
Q Consensus 673 ~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 729 (868)
-.-.......+++++|.+.+|++-++-|+++..|.+|+.+|-..|+.+.|.+-...+
T Consensus 561 ~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A 617 (638)
T KOG1126|consen 561 YHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWA 617 (638)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHH
Confidence 112222233445555555555555555555555555555555555555555544444
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.3e-08 Score=106.86 Aligned_cols=543 Identities=14% Similarity=0.187 Sum_probs=302.5
Q ss_pred hhHHHHHHHhcCChhHHHHHHhhcCC--CCceeHHHH-----HHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHH
Q 047992 94 KTKLLSVYAKCGCLDDAREVFEDMRE--RNLYTWSAM-----IGAYSRDQRWREVVELFFLMVQDGLFPDDFLFPKILQA 166 (868)
Q Consensus 94 ~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~l-----i~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~ 166 (868)
...+.+.|.+.|-...|.+.+..+.+ +.++ -+.+ +.+|.-.-.++++++.++.|...+++.|..+..-+..-
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vV-hth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatk 687 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVV-HTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATK 687 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHHH-HhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 56677889999999999988887753 2221 1111 22344455678899999999988887776554444433
Q ss_pred hhCCCChHHHHHHHHHHHH-----------hCCCCCcchHHHHHHHHHHcCChHHHHHHHhhcCCC--------------
Q 047992 167 CGNCGDFEAGKLMHSLVIK-----------LGMSCVRRVRNSVLAVYVKCGKLIWARRFFESMDEK-------------- 221 (868)
Q Consensus 167 ~~~~~~~~~a~~~~~~~~~-----------~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-------------- 221 (868)
+...--.+.-.++|+.... .++..|+.+.-.-|.+.++.|++.+..++..+-.--
T Consensus 688 y~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL 767 (1666)
T KOG0985|consen 688 YHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKL 767 (1666)
T ss_pred HHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccc
Confidence 3332223333344443322 135667778888899999999988888877654210
Q ss_pred ----------ChhhHH-------------HHHHHHHhcCChhHHHHHHHHHHHcCCcc-----------ChhhHHHHHHH
Q 047992 222 ----------DGVAWN-------------SMISGYFQIGENDEAHRLFDKMCREEIKL-----------GVVTFNILIRS 267 (868)
Q Consensus 222 ----------d~~~~~-------------~li~~~~~~g~~~~A~~l~~~m~~~g~~p-----------~~~~~~~li~~ 267 (868)
|.+.+- ..|..|.+.=++...-.+...+..-.... ..+.-+-|+.-
T Consensus 768 ~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~E 847 (1666)
T KOG0985|consen 768 TDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEE 847 (1666)
T ss_pred cccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHH
Confidence 111111 12333333222222222222211111000 00111222333
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHH-H---HHHHHHh----CCccCCc--ccH------
Q 047992 268 YNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQAL-D---LFKEMSF----VGVMPNG--VTI------ 331 (868)
Q Consensus 268 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~-~---l~~~m~~----~g~~pd~--~t~------ 331 (868)
.-+.+++.--...++...+.|.+ |..++|+|...|..+++-.+-. + .|+...- ....|.. ..|
T Consensus 848 vEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD 926 (1666)
T KOG0985|consen 848 VEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCD 926 (1666)
T ss_pred HHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCc
Confidence 34455555566667777777777 8888888888887765433211 1 1111000 0000000 000
Q ss_pred HHHHHHHhchhhHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHcCCCHHHHHHHHHhcC-----C-CCeehHHHHHHHHH
Q 047992 332 TSAISACTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEELEAAERVFDMIK-----D-KDVYSWNSMIAGYC 405 (868)
Q Consensus 332 ~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~vf~~~~-----~-~~~~~~~~li~~~~ 405 (868)
.-+++.|....-+. ..-+.+++ ..|...|+.++.- .+ .--+.+.++.. + .|+..-+.-+.++.
T Consensus 927 ~elI~vcNeNSlfK---~~aRYlv~---R~D~~LW~~VL~e---~n--~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfM 995 (1666)
T KOG0985|consen 927 LELINVCNENSLFK---SQARYLVE---RSDPDLWAKVLNE---EN--PYRRQLIDQVVQTALPETQDPEEVSVTVKAFM 995 (1666)
T ss_pred HHHHHhcCchhHHH---HHHHHHHh---ccChHHHHHHHhc---cC--hHHHHHHHHHHHhcCCccCChHHHHHHHHHHH
Confidence 11122221111111 01111111 1122333322210 00 00011122111 1 24444555566666
Q ss_pred hcCChhHHHHHHHHhHhCCCCCCeeeh-----hhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCC
Q 047992 406 QAGYCGKAYELFIKMQESDVPPNVITW-----NVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQ 480 (868)
Q Consensus 406 ~~g~~~~A~~l~~~m~~~g~~p~~~t~-----~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~ 480 (868)
..+-..+-+++++++.-.+ +.++= |.||-...+ -+.....+..+++-.-. .| .+......++-
T Consensus 996 tadLp~eLIELLEKIvL~~---S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyD--a~------~ia~iai~~~L 1063 (1666)
T KOG0985|consen 996 TADLPNELIELLEKIVLDN---SVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYD--AP------DIAEIAIENQL 1063 (1666)
T ss_pred hcCCcHHHHHHHHHHhcCC---cccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCC--ch------hHHHHHhhhhH
Confidence 6666666666666655321 22211 222222222 22233334444332111 11 12233344455
Q ss_pred hhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhc
Q 047992 481 KNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDG 560 (868)
Q Consensus 481 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~ 560 (868)
+++|..+|++. +.+....+.|++ .-|+++.|.+.-++
T Consensus 1064 yEEAF~ifkkf----------------------------------------~~n~~A~~VLie---~i~~ldRA~efAe~ 1100 (1666)
T KOG0985|consen 1064 YEEAFAIFKKF----------------------------------------DMNVSAIQVLIE---NIGSLDRAYEFAER 1100 (1666)
T ss_pred HHHHHHHHHHh----------------------------------------cccHHHHHHHHH---HhhhHHHHHHHHHh
Confidence 55555555543 233333344443 35778888888887
Q ss_pred CCCCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHH
Q 047992 561 MSSKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHY 640 (868)
Q Consensus 561 ~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y 640 (868)
..+|. .|+.+..+-.+.|...+|++-|-+. .|...|.-++.++++.|.+++-.+++....+ ..-+|.++
T Consensus 1101 ~n~p~--vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRk-k~~E~~id-- 1169 (1666)
T KOG0985|consen 1101 CNEPA--VWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARK-KVREPYID-- 1169 (1666)
T ss_pred hCChH--HHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHH-hhcCccch--
Confidence 76665 4999999999999999999988542 3567899999999999999999999876555 46677775
Q ss_pred HHHHHhhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCCh
Q 047992 641 SAMIDLYGRSGKLEEAMEFIEDMPIEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPE 720 (868)
Q Consensus 641 ~~lvd~l~r~g~~~eA~~~i~~~~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~ 720 (868)
+.++-+|++.+++.|-++++.. ||..-......-|...|.++-|+..+. +.+.|-.|+..+...|.+.
T Consensus 1170 ~eLi~AyAkt~rl~elE~fi~g----pN~A~i~~vGdrcf~~~~y~aAkl~y~--------~vSN~a~La~TLV~LgeyQ 1237 (1666)
T KOG0985|consen 1170 SELIFAYAKTNRLTELEEFIAG----PNVANIQQVGDRCFEEKMYEAAKLLYS--------NVSNFAKLASTLVYLGEYQ 1237 (1666)
T ss_pred HHHHHHHHHhchHHHHHHHhcC----CCchhHHHHhHHHhhhhhhHHHHHHHH--------HhhhHHHHHHHHHHHHHHH
Confidence 5788999999999999999874 888888889999999999999988875 4577888888888888888
Q ss_pred hHHHHHH
Q 047992 721 DALKVRK 727 (868)
Q Consensus 721 ~a~~~~~ 727 (868)
.|..--+
T Consensus 1238 ~AVD~aR 1244 (1666)
T KOG0985|consen 1238 GAVDAAR 1244 (1666)
T ss_pred HHHHHhh
Confidence 7766433
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.3e-09 Score=109.73 Aligned_cols=195 Identities=15% Similarity=0.112 Sum_probs=154.2
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC---ceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 047992 531 LESSLPVMNSLIDTYAKSGNIVYSRTIFDGMSSKD---IITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSI 607 (868)
Q Consensus 531 ~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~d---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 607 (868)
.+..+..|-++.--|--.|++.+|++.|.+...-| ...|-.....|+-.|..++|+..+...-+. ++-.+-.+.-+
T Consensus 308 yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYl 386 (611)
T KOG1173|consen 308 YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYL 386 (611)
T ss_pred CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHH
Confidence 44467778888888888899999999998765433 458999999999999999999999888772 22234555556
Q ss_pred HHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC--CC------CC-CHHHHHHHHHH
Q 047992 608 ILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM--PI------EP-DSSIWEALLTA 678 (868)
Q Consensus 608 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~--~~------~p-~~~~w~~ll~a 678 (868)
..-|...+..+-|.++|.+.....+..|-+.|+-.+ +....+.+.+|..+|+.. ++ .+ -..+|+.|+.+
T Consensus 387 gmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgv--vay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~ 464 (611)
T KOG1173|consen 387 GMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGV--VAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHA 464 (611)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhh--eeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHH
Confidence 667888999999999999887654555555555443 345677888888888765 11 12 23468889999
Q ss_pred HHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHH
Q 047992 679 CRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKL 728 (868)
Q Consensus 679 ~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 728 (868)
||+.+.++.|...+++++.+.|.++.+|..++-+|.-.|+.+.|......
T Consensus 465 ~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhK 514 (611)
T KOG1173|consen 465 YRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHK 514 (611)
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999997653
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.7e-09 Score=107.29 Aligned_cols=189 Identities=14% Similarity=0.152 Sum_probs=155.1
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 047992 534 SLPVMNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKP-NRGTFLSIIL 609 (868)
Q Consensus 534 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~ 609 (868)
.+.+...+.+-|+-.++-+.|...|++.. ++-...|+.|..-|....+...|++-+++.++ +.| |...|.++..
T Consensus 329 R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWYGLGQ 406 (559)
T KOG1155|consen 329 RPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYRAWYGLGQ 406 (559)
T ss_pred CccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHHHHhhhhH
Confidence 34556667788888899999999998765 45567899999999999999999999999988 677 6689999999
Q ss_pred HhhccCChHHHHHHHHHhhhhcCCCC-ChhHHHHHHHhhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHH
Q 047992 610 AHSLAGMVDLGKKVFCSITECYQIIP-MIEHYSAMIDLYGRSGKLEEAMEFIEDMP--IEPDSSIWEALLTACRIHGNID 686 (868)
Q Consensus 610 a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lvd~l~r~g~~~eA~~~i~~~~--~~p~~~~w~~ll~a~~~~~~~~ 686 (868)
+|.-.++..=|+-+|+...+ ..| |...|..|.++|.+.++++||++-+++.- -..+..++..|...+...++.+
T Consensus 407 aYeim~Mh~YaLyYfqkA~~---~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~ 483 (559)
T KOG1155|consen 407 AYEIMKMHFYALYYFQKALE---LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLN 483 (559)
T ss_pred HHHHhcchHHHHHHHHHHHh---cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHH
Confidence 99999999999999998876 344 45578999999999999999999999872 2234467888899999999999
Q ss_pred HHHHHHHHHhc-------cCCCCchhHHHHHHHHhhcCCChhHHHHHH
Q 047992 687 LAVLAIERLFD-------LEPGDVLIQRLILQIYAICGKPEDALKVRK 727 (868)
Q Consensus 687 ~a~~~~~~~~~-------l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 727 (868)
.|.+.+++-++ .+|+-..+-..|++-+.+.++|++|...-.
T Consensus 484 eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~ 531 (559)
T KOG1155|consen 484 EAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYAT 531 (559)
T ss_pred HHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 99999999887 556556677779999999999999987543
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.28 E-value=4e-10 Score=114.29 Aligned_cols=196 Identities=15% Similarity=0.104 Sum_probs=165.7
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 047992 534 SLPVMNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKP-NRGTFLSIIL 609 (868)
Q Consensus 534 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~ 609 (868)
....+..+...|.+.|++++|.+.|++.. +.+...|..+...|...|++++|++.|++..+. .| +...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTL--NPNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHH
Confidence 45677888999999999999999999764 345678888999999999999999999999984 44 4466777788
Q ss_pred HhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHH
Q 047992 610 AHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPD-SSIWEALLTACRIHGNIDL 687 (868)
Q Consensus 610 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~-~~~w~~ll~a~~~~~~~~~ 687 (868)
.+...|++++|..+|+...+..........+..+...+.+.|++++|.+.+++. ...|+ ...|..+...+...|+++.
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 889999999999999998874332334556778889999999999999999987 34444 5578888888999999999
Q ss_pred HHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHHh
Q 047992 688 AVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLERE 731 (868)
Q Consensus 688 a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 731 (868)
|...+++++++.|.++..+..++.++...|++++|....+.+..
T Consensus 188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999998887754
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.5e-09 Score=119.39 Aligned_cols=283 Identities=14% Similarity=0.035 Sum_probs=184.8
Q ss_pred HhcCChhHHHHHHHHhHhCCCCCCeee-hhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCee--ehhhhHHHHHhcCCh
Q 047992 405 CQAGYCGKAYELFIKMQESDVPPNVIT-WNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTA--SWNSLIAGYQQLGQK 481 (868)
Q Consensus 405 ~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~--~~~~li~~~~~~g~~ 481 (868)
...|+++.|.+.+.+..+.. |+... +-....++.+.|+++.|.+.+.+..+.. |+.. ........+.+.|++
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~---p~~~l~~~~~~a~l~l~~~~~ 169 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA---GNDNILVEIARTRILLAQNEL 169 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CcCchHHHHHHHHHHHHCCCH
Confidence 45678888888887766542 33322 2333455667788888888887765432 3332 223346666777777
Q ss_pred hHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcC
Q 047992 482 NNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGM 561 (868)
Q Consensus 482 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~ 561 (868)
++|.+.++.+.+.. | .++.+...+..+|.+.|++++|.+.+..+
T Consensus 170 ~~Al~~l~~l~~~~--P----------------------------------~~~~~l~ll~~~~~~~~d~~~a~~~l~~l 213 (409)
T TIGR00540 170 HAARHGVDKLLEMA--P----------------------------------RHKEVLKLAEEAYIRSGAWQALDDIIDNM 213 (409)
T ss_pred HHHHHHHHHHHHhC--C----------------------------------CCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 77777777776431 2 24455666777777777777777777766
Q ss_pred CCCCc---eecH----HHHHHHHhcCChHHHHHHHHHHHHCCCC---CCHHHHHHHHHHhhccCChHHHHHHHHHhhhhc
Q 047992 562 SSKDI---ITWN----SLICGYVLHGFWHAALDLFDQMKSFGLK---PNRGTFLSIILAHSLAGMVDLGKKVFCSITECY 631 (868)
Q Consensus 562 ~~~d~---~~~~----~li~~~~~~g~~~~A~~l~~~m~~~g~~---p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 631 (868)
.+..+ ..+. ....++...+..+++.+.+.++.+.... .+...+..+...+...|+.++|.+.++...+..
T Consensus 214 ~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~ 293 (409)
T TIGR00540 214 AKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL 293 (409)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Confidence 53321 1121 1112223334444455566666653211 266777888889999999999999999988754
Q ss_pred CCCCChhHHHHHHHhhhhcCChHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--HHhccCCCCchh
Q 047992 632 QIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM----PIEPDSSIWEALLTACRIHGNIDLAVLAIE--RLFDLEPGDVLI 705 (868)
Q Consensus 632 ~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~----~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~--~~~~l~p~~~~~ 705 (868)
.-.+...+.....-.....++.+++.+.+++. |..|+.....+|...|...|+++.|++.++ +.++..|++..
T Consensus 294 pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~- 372 (409)
T TIGR00540 294 GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND- 372 (409)
T ss_pred CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-
Confidence 33332211111111222357788888888776 333433677899999999999999999999 68889997655
Q ss_pred HHHHHHHHhhcCCChhHHHHHHHH
Q 047992 706 QRLILQIYAICGKPEDALKVRKLE 729 (868)
Q Consensus 706 ~~~l~~~y~~~g~~~~a~~~~~~m 729 (868)
+..|+.+|...|+.++|.++++.-
T Consensus 373 ~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 373 LAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 669999999999999999988753
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.4e-10 Score=121.15 Aligned_cols=243 Identities=19% Similarity=0.154 Sum_probs=117.5
Q ss_pred hhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCC-C-CChhHHHHHHHHHHhcCCHHHHHHHH
Q 047992 481 KNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSL-E-SSLPVMNSLIDTYAKSGNIVYSRTIF 558 (868)
Q Consensus 481 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~-~-~~~~~~~~Li~~y~k~g~~~~A~~~f 558 (868)
..+|+..|..... .+.-......-+-.+|..++++++++.++..+.+..- . .+..+|+..+--.-+.=.+..--+-+
T Consensus 335 ~~~A~~~~~klp~-h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~L 413 (638)
T KOG1126|consen 335 CREALNLFEKLPS-HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDL 413 (638)
T ss_pred HHHHHHHHHhhHH-hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHH
Confidence 3455555555222 1222223333444555555666666666655544211 0 13344443332221111111111111
Q ss_pred hcCCCCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCCh
Q 047992 559 DGMSSKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKP-NRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMI 637 (868)
Q Consensus 559 ~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~ 637 (868)
-.+.+..+.+|-++...|.-+++.+.|++.|++.++ +.| ...+|+-+..-.......|.|..+|+... ..+.
T Consensus 414 i~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al-----~~~~ 486 (638)
T KOG1126|consen 414 IDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL-----GVDP 486 (638)
T ss_pred HhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh-----cCCc
Confidence 112233445566666666666666666666666555 455 33455444444455555555666555432 2444
Q ss_pred hHHHHH---HHhhhhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHH
Q 047992 638 EHYSAM---IDLYGRSGKLEEAMEFIEDM-PIEPDSS-IWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQI 712 (868)
Q Consensus 638 ~~y~~l---vd~l~r~g~~~eA~~~i~~~-~~~p~~~-~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~ 712 (868)
.||+++ .-.|.|.++++.|+-.|+++ .+.|... +...+...+...|..|+|.+.+++++.+||.|+-.-+..+.+
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~i 566 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASI 566 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHH
Confidence 444443 23455566666666555555 4555433 333334444555556666666666666666666555556666
Q ss_pred HhhcCCChhHHHHHHHHHh
Q 047992 713 YAICGKPEDALKVRKLERE 731 (868)
Q Consensus 713 y~~~g~~~~a~~~~~~m~~ 731 (868)
+...++++||..+.+.+++
T Consensus 567 l~~~~~~~eal~~LEeLk~ 585 (638)
T KOG1126|consen 567 LFSLGRYVEALQELEELKE 585 (638)
T ss_pred HHhhcchHHHHHHHHHHHH
Confidence 6666666666655555554
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.2e-11 Score=129.15 Aligned_cols=255 Identities=20% Similarity=0.238 Sum_probs=80.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHhHhCCCCC-CeeehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHh
Q 047992 399 SMIAGYCQAGYCGKAYELFIKMQESDVPP-NVITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQ 477 (868)
Q Consensus 399 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~ 477 (868)
.+...+.+.|++++|++++++......+| |..-|..+...+...++++.|...++++...+ +.++..+..++.. ..
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~--~~~~~~~~~l~~l-~~ 89 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD--KANPQDYERLIQL-LQ 89 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccccccccccccc-cc
Confidence 45778889999999999997665444234 44455566667778999999999999998765 3355567777777 79
Q ss_pred cCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 047992 478 LGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTI 557 (868)
Q Consensus 478 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~ 557 (868)
.+++++|..++.+..+.. ++... +..++..|.+.|+++++.++
T Consensus 90 ~~~~~~A~~~~~~~~~~~--~~~~~-----------------------------------l~~~l~~~~~~~~~~~~~~~ 132 (280)
T PF13429_consen 90 DGDPEEALKLAEKAYERD--GDPRY-----------------------------------LLSALQLYYRLGDYDEAEEL 132 (280)
T ss_dssp -----------------------------------------------------------------H-HHHTT-HHHHHHH
T ss_pred cccccccccccccccccc--cccch-----------------------------------hhHHHHHHHHHhHHHHHHHH
Confidence 999999999887765432 23233 33444555566666666666
Q ss_pred HhcCC-----CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhhhc
Q 047992 558 FDGMS-----SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITECY 631 (868)
Q Consensus 558 f~~~~-----~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 631 (868)
++.+. +.+...|..+...+.+.|+.++|++.|++.++ ..|+. .....++..+...|+.+++..++....+..
T Consensus 133 l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~ 210 (280)
T PF13429_consen 133 LEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA 210 (280)
T ss_dssp HHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-
T ss_pred HHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC
Confidence 65532 23555666666677777777777777777777 56653 445566666777777777777776666543
Q ss_pred CCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 047992 632 QIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFD 697 (868)
Q Consensus 632 ~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~ 697 (868)
.++...+..+..++...|+.++|...+++. ...| |+.+...+..+....|+.+.|.++.+++++
T Consensus 211 --~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 211 --PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp --HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred --cCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 333344566677777777777777777776 3334 455666666777777777777777776654
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.3e-07 Score=103.17 Aligned_cols=427 Identities=16% Similarity=0.130 Sum_probs=233.0
Q ss_pred HcCCccChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCc-c
Q 047992 251 REEIKLGVVTFNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNG-V 329 (868)
Q Consensus 251 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~ 329 (868)
...+..|...|..|.-+...+|+++.+.+.|++....-+. ....|+.+-..|...|.-..|..++++-....-.|+. .
T Consensus 316 ~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s 394 (799)
T KOG4162|consen 316 LKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDIS 394 (799)
T ss_pred HhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcch
Confidence 3344556667777777777777777777777776543222 4566777777788888877888877776433322333 3
Q ss_pred cHHHHHHHHh-chhhHHHHHHHHHHHHHh--CC--CCCccHHHHHHHHHHcC----C-------CHHHHHHHHHhcCC--
Q 047992 330 TITSAISACT-DLKALAMGMEIHSLAVKM--GF--TDDVLVGNSLINMYSKC----E-------ELEAAERVFDMIKD-- 391 (868)
Q Consensus 330 t~~~ll~a~~-~~~~~~~a~~i~~~~~~~--g~--~~~~~~~~~li~~y~~~----g-------~~~~A~~vf~~~~~-- 391 (868)
.+...-+.|. +.+..+++...-..++.. +. ......+-.+.-+|+.. . ...++.+.+++..+
T Consensus 395 ~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d 474 (799)
T KOG4162|consen 395 VLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD 474 (799)
T ss_pred HHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC
Confidence 3333333343 455666666555555542 11 11122233333333221 1 12233344444432
Q ss_pred -CCeehHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCeeehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhh
Q 047992 392 -KDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNS 470 (868)
Q Consensus 392 -~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~ 470 (868)
.|+.+.--+.--|+..++.+.|++..++..+.+-.-+...|..|.-.+.-.+++.+|+.+.+...... +.|......
T Consensus 475 ~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~--~~N~~l~~~ 552 (799)
T KOG4162|consen 475 PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF--GDNHVLMDG 552 (799)
T ss_pred CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh--hhhhhhchh
Confidence 23323333333456666677777777777666545566666666666666777777777766654432 112211112
Q ss_pred hHHHHHhcCChhHHHHHHHHhhcC--CCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 047992 471 LIAGYQQLGQKNNALGVFRKMQSS--CFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKS 548 (868)
Q Consensus 471 li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~ 548 (868)
-+..-..-++.++|+.....+... ...|-. ..
T Consensus 553 ~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q----------------------------------------------~~ 586 (799)
T KOG4162|consen 553 KIHIELTFNDREEALDTCIHKLALWEAEYGVQ----------------------------------------------QT 586 (799)
T ss_pred hhhhhhhcccHHHHHHHHHHHHHHHHhhhhHh----------------------------------------------hh
Confidence 222223345555555554444310 000000 00
Q ss_pred CCHHHHHHHHhcCC-----CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--------HHHHHHHHHhhccC
Q 047992 549 GNIVYSRTIFDGMS-----SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR--------GTFLSIILAHSLAG 615 (868)
Q Consensus 549 g~~~~A~~~f~~~~-----~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--------~t~~~ll~a~~~~g 615 (868)
|+-....+.+..+. ..|.++-..-+.+... -+.+.+..-.. |...-+.|.. ..|......+...+
T Consensus 587 ~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a-~~~~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~ 664 (799)
T KOG4162|consen 587 LDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVA-SQLKSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSG 664 (799)
T ss_pred hhhhhhhhhhcccccCcccccccchhhHHHHHHHH-hhhhhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcC
Confidence 11111122222211 1122211111222221 11111100000 1111122221 12334445667777
Q ss_pred ChHHHHHHHHHhhhhcCCCCC-hhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHH--
Q 047992 616 MVDLGKKVFCSITECYQIIPM-IEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPDSS-IWEALLTACRIHGNIDLAVL-- 690 (868)
Q Consensus 616 ~~~~a~~~~~~m~~~~~~~p~-~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~~~-~w~~ll~a~~~~~~~~~a~~-- 690 (868)
..++|+..+..... +.|. ...|.-..+++...|.++||.+.|... .+.||.+ +..+|...+..-|+-..|+.
T Consensus 665 ~~~~a~~CL~Ea~~---~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~ 741 (799)
T KOG4162|consen 665 NDDEARSCLLEASK---IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRS 741 (799)
T ss_pred CchHHHHHHHHHHh---cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHH
Confidence 88888766665544 3332 234555667888899999999988877 7788877 67777777888899888888
Q ss_pred HHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHHh
Q 047992 691 AIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLERE 731 (868)
Q Consensus 691 ~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 731 (868)
....++++||.|+.+|..|+.+.-+.|+.+.|.+-...--+
T Consensus 742 ~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 742 LLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 99999999999999999999999999999999998776544
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.22 E-value=8e-07 Score=94.80 Aligned_cols=537 Identities=15% Similarity=0.175 Sum_probs=296.1
Q ss_pred hHHhhHHHHhccCCCCcchHHHHHHHHhCCChhHHHHHHHHHhhcCCCCCcccHHHHHHHHhccCChHHHHHHHHHh-hh
Q 047992 7 TTFQQLHSLLTKKSNPRFRDTHLDFLCGNGRLNEAITVLDSIATQGAKVRRNTYINLLQACIDSNSIHLARKLHAFL-NL 85 (868)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~i~~~~-~~ 85 (868)
+.|+++.+.++...|.++|...+......|-++-++.+|++.++-. +..-..-+.-++..++.+.+.+.++.+ ..
T Consensus 123 ~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~----P~~~eeyie~L~~~d~~~eaa~~la~vln~ 198 (835)
T KOG2047|consen 123 RTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA----PEAREEYIEYLAKSDRLDEAAQRLATVLNQ 198 (835)
T ss_pred HHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC----HHHHHHHHHHHHhccchHHHHHHHHHhcCc
Confidence 4667777777888888899999998888888888888988887653 333445555566678888887777765 21
Q ss_pred ------cCCCChhhhhHHHHHHHhcCChh---HHHHHHhhcCC--CC--ceeHHHHHHHHHhCCChhHHHHHHHHhHHCC
Q 047992 86 ------VTEIDVFVKTKLLSVYAKCGCLD---DAREVFEDMRE--RN--LYTWSAMIGAYSRDQRWREVVELFFLMVQDG 152 (868)
Q Consensus 86 ------~~~~~~~~~~~li~~~~~~g~~~---~A~~~f~~~~~--~~--~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g 152 (868)
....+..++.-+-+..++.-+.- ....++..+.. +| ...|++|..-|.+.|.++.|.++|++..+.
T Consensus 199 d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~- 277 (835)
T KOG2047|consen 199 DEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT- 277 (835)
T ss_pred hhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh-
Confidence 12334455555555555543322 23334444432 22 357999999999999999999999887653
Q ss_pred CCCCcchHHHHHHHhhCCCChHHHHHHHHHHH-HhCCCCCcchHHHHHHHHHHcCChHHHHHHHhhcCC-----------
Q 047992 153 LFPDDFLFPKILQACGNCGDFEAGKLMHSLVI-KLGMSCVRRVRNSVLAVYVKCGKLIWARRFFESMDE----------- 220 (868)
Q Consensus 153 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~-~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~----------- 220 (868)
.....-|..+..+++.-.....+..+- ... +.|-+.+.. +++-...-|+.+..
T Consensus 278 -v~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~ed~~-------------dl~~~~a~~e~lm~rr~~~lNsVlL 342 (835)
T KOG2047|consen 278 -VMTVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEEDDV-------------DLELHMARFESLMNRRPLLLNSVLL 342 (835)
T ss_pred -heehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChhhhh-------------hHHHHHHHHHHHHhccchHHHHHHH
Confidence 234445666666665432221111111 000 111111111 12222223333221
Q ss_pred ----CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcc------ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 047992 221 ----KDGVAWNSMISGYFQIGENDEAHRLFDKMCREEIKL------GVVTFNILIRSYNQLGQCDVAMEMVKRMESLGIT 290 (868)
Q Consensus 221 ----~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 290 (868)
.++..|..-+.. ..|+..+-...|.+.... +.| -...|-.+...|-..|+++.|..+|++..+-..+
T Consensus 343 RQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~ 419 (835)
T KOG2047|consen 343 RQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYK 419 (835)
T ss_pred hcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCcc
Confidence 245566554443 356777888888887653 223 2346888889999999999999999998876433
Q ss_pred CC---eeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcccHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCCccHHH
Q 047992 291 PD---VFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLAVKMGFTDDVLVGN 367 (868)
Q Consensus 291 p~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~ 367 (868)
-- ..+|......=.+..+++.|+++++..... |.... +..+ ..+..-++ .+ ..+..+|.
T Consensus 420 ~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v---P~~~~----~~~y-d~~~pvQ~-rl---------hrSlkiWs 481 (835)
T KOG2047|consen 420 TVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV---PTNPE----LEYY-DNSEPVQA-RL---------HRSLKIWS 481 (835)
T ss_pred chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC---CCchh----hhhh-cCCCcHHH-HH---------HHhHHHHH
Confidence 21 344555555566778899999988877432 22211 1111 11110000 00 11223444
Q ss_pred HHHHHHHcCCCHHHHHHHHHhcCCCCeehHHHHHH---HHHhcCChhHHHHHHHHhHhCCCCCCe-eehhhHHHHHHh--
Q 047992 368 SLINMYSKCEELEAAERVFDMIKDKDVYSWNSMIA---GYCQAGYCGKAYELFIKMQESDVPPNV-ITWNVLISGYIQ-- 441 (868)
Q Consensus 368 ~li~~y~~~g~~~~A~~vf~~~~~~~~~~~~~li~---~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~li~~~~~-- 441 (868)
..++.--.+|-++....+++++.+--+.|=..++. -+-.+.-++++.+.|++=+..=..|+. ..|++.+.-+.+
T Consensus 482 ~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ry 561 (835)
T KOG2047|consen 482 MYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRY 561 (835)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHh
Confidence 44444445555555555555554422222111111 112233345555555443322222322 233433333322
Q ss_pred -cCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHH----HhcCChhHHHHHHHHhhcCCCCCC--HHhHHHHHHHHhchh
Q 047992 442 -NGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGY----QQLGQKNNALGVFRKMQSSCFYPN--CVTILSVLPACAYLV 514 (868)
Q Consensus 442 -~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~----~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~~ 514 (868)
...++.|..+|++..+.. ||.. -.++--.| -..|....|+.++++... ++++. ...|+..+.-.+..=
T Consensus 562 gg~klEraRdLFEqaL~~C--pp~~--aKtiyLlYA~lEEe~GLar~amsiyerat~-~v~~a~~l~myni~I~kaae~y 636 (835)
T KOG2047|consen 562 GGTKLERARDLFEQALDGC--PPEH--AKTIYLLYAKLEEEHGLARHAMSIYERATS-AVKEAQRLDMYNIYIKKAAEIY 636 (835)
T ss_pred cCCCHHHHHHHHHHHHhcC--CHHH--HHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHh
Confidence 224555555555555522 1111 11111112 224555666666666432 34443 234555555555555
Q ss_pred chHHHHHHHHHHHHhCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHhc---CCCC--CceecHHHHHHHHhcCChHHHHH
Q 047992 515 ASNKVKEIHGCVLRRSLESS--LPVMNSLIDTYAKSGNIVYSRTIFDG---MSSK--DIITWNSLICGYVLHGFWHAALD 587 (868)
Q Consensus 515 ~~~~~~~i~~~~~~~~~~~~--~~~~~~Li~~y~k~g~~~~A~~~f~~---~~~~--d~~~~~~li~~~~~~g~~~~A~~ 587 (868)
.+...+.+++..++. ++.+ ....--..++=.+.|.++.|+.++.- +.+| +...|.+-=.--.+||+ .+
T Consensus 637 Gv~~TR~iYekaIe~-Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGn----ed 711 (835)
T KOG2047|consen 637 GVPRTREIYEKAIES-LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGN----ED 711 (835)
T ss_pred CCcccHHHHHHHHHh-CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCC----HH
Confidence 566778888888875 2221 23345568888999999999999974 3333 56678888777889999 34
Q ss_pred HHHHHHH
Q 047992 588 LFDQMKS 594 (868)
Q Consensus 588 l~~~m~~ 594 (868)
.+++|++
T Consensus 712 T~keMLR 718 (835)
T KOG2047|consen 712 TYKEMLR 718 (835)
T ss_pred HHHHHHH
Confidence 5556654
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.16 E-value=8.9e-08 Score=100.78 Aligned_cols=284 Identities=16% Similarity=0.099 Sum_probs=209.3
Q ss_pred CeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcccHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCCccHHHHHHH
Q 047992 292 DVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLIN 371 (868)
Q Consensus 292 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 371 (868)
|....-.-..-+...+++.+.+++++...+ ..++....+..-|.++..+|+...-..+-..+++. .+....+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle-~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLE-KDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHh-hCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHH
Confidence 455555556667777888888888888763 34555566666666666777766655555555554 3556778888888
Q ss_pred HHHcCCCHHHHHHHHHhcCCC---CeehHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCeeehhhHHHHHHhcCCHHHH
Q 047992 372 MYSKCEELEAAERVFDMIKDK---DVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNVLISGYIQNGNEDEA 448 (868)
Q Consensus 372 ~y~~~g~~~~A~~vf~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A 448 (868)
.|.-.|+..+|++.|.....- =...|-.....|+-.|..++|+..+...-+.= +-..-.+--+.--|.+.++.+.|
T Consensus 321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHH
Confidence 888889999999999876543 34579999999999999999998887665431 11222233344457889999999
Q ss_pred HHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHH
Q 047992 449 VDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLR 528 (868)
Q Consensus 449 ~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~ 528 (868)
.+.|.+..... |.|+...+-+.-.....+.+.+|..+|+..... .++ +..
T Consensus 400 e~Ff~~A~ai~--P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~--ik~--------------------------~~~ 449 (611)
T KOG1173|consen 400 EKFFKQALAIA--PSDPLVLHELGVVAYTYEEYPEALKYFQKALEV--IKS--------------------------VLN 449 (611)
T ss_pred HHHHHHHHhcC--CCcchhhhhhhheeehHhhhHHHHHHHHHHHHH--hhh--------------------------ccc
Confidence 99999887654 667778888888888888999999998876510 000 000
Q ss_pred hCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcC---CCCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 047992 529 RSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGM---SSKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFL 605 (868)
Q Consensus 529 ~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~---~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 605 (868)
. ...-..+.+.|...|.|++..++|...|++. .++|+.++.++.-.|...|+.+.|++.|.+.+. ++||..+-.
T Consensus 450 e-~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~ 526 (611)
T KOG1173|consen 450 E-KIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFIS 526 (611)
T ss_pred c-ccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHH
Confidence 0 0023456788999999999999999999964 478899999999999999999999999999988 899998877
Q ss_pred HHHHHh
Q 047992 606 SIILAH 611 (868)
Q Consensus 606 ~ll~a~ 611 (868)
.+|.-+
T Consensus 527 ~lL~~a 532 (611)
T KOG1173|consen 527 ELLKLA 532 (611)
T ss_pred HHHHHH
Confidence 777543
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.8e-11 Score=86.54 Aligned_cols=50 Identities=38% Similarity=0.634 Sum_probs=48.0
Q ss_pred CCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 047992 564 KDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSL 613 (868)
Q Consensus 564 ~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 613 (868)
||+++||++|.+|+++|+.++|+++|++|.+.|++||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.7e-09 Score=123.50 Aligned_cols=204 Identities=13% Similarity=0.035 Sum_probs=153.2
Q ss_pred hHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHH
Q 047992 516 SNKVKEIHGCVLRRSLES-SLPVMNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQ 591 (868)
Q Consensus 516 ~~~~~~i~~~~~~~~~~~-~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~ 591 (868)
.+.|......+++ ++| +...+..+..++...|++++|...|++.. +.+...|..+...+...|++++|+..+++
T Consensus 320 ~~~A~~~~~~Al~--ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~ 397 (553)
T PRK12370 320 MIKAKEHAIKATE--LDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINE 397 (553)
T ss_pred HHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4455555555555 444 66777888889999999999999999765 34566888899999999999999999999
Q ss_pred HHHCCCCCCHH-HHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCC-hhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCC
Q 047992 592 MKSFGLKPNRG-TFLSIILAHSLAGMVDLGKKVFCSITECYQIIPM-IEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPD 668 (868)
Q Consensus 592 m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~ 668 (868)
..+ +.|+.. .+...+.++...|+.++|...++..... ..|+ ...+..+..+|...|++++|.+.+++. +..|+
T Consensus 398 Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~ 473 (553)
T PRK12370 398 CLK--LDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT 473 (553)
T ss_pred HHh--cCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch
Confidence 999 677653 3334445566789999999999987653 2343 445677888899999999999999987 66666
Q ss_pred HH-HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHH
Q 047992 669 SS-IWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRK 727 (868)
Q Consensus 669 ~~-~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 727 (868)
.. .++.|...+...| +.|...++++++..-..+.....+..+|+-.|+-+.+...++
T Consensus 474 ~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 531 (553)
T PRK12370 474 GLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMWNK 531 (553)
T ss_pred hHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHHHH
Confidence 55 4455555556666 588888888887554444455558999999999999888844
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.15 E-value=6.1e-11 Score=86.42 Aligned_cols=50 Identities=20% Similarity=0.521 Sum_probs=48.4
Q ss_pred CCceeHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHhhC
Q 047992 120 RNLYTWSAMIGAYSRDQRWREVVELFFLMVQDGLFPDDFLFPKILQACGN 169 (868)
Q Consensus 120 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 169 (868)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999874
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.1e-07 Score=93.92 Aligned_cols=215 Identities=16% Similarity=0.149 Sum_probs=108.6
Q ss_pred HHHHHHHHhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCeeeh--hhHHHH-----HHhcCCHHHHHHHH
Q 047992 380 EAAERVFDMIKDKDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITW--NVLISG-----YIQNGNEDEAVDLF 452 (868)
Q Consensus 380 ~~A~~vf~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~--~~li~~-----~~~~g~~~~A~~~f 452 (868)
+.|.+++-.+.+-=+.+--.++--|.+.+++++|..+.+++. +.++.-| -.+..+ ......+.-|.+.|
T Consensus 271 EgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~----PttP~EyilKgvv~aalGQe~gSreHlKiAqqff 346 (557)
T KOG3785|consen 271 EGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLD----PTTPYEYILKGVVFAALGQETGSREHLKIAQQFF 346 (557)
T ss_pred ccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcC----CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHH
Confidence 455555544443333334445556777788888888777765 2222222 111111 11122355677777
Q ss_pred HhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCC
Q 047992 453 QRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLE 532 (868)
Q Consensus 453 ~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~ 532 (868)
+..-+......++..-.+|.+.+.-..++++.+..++....- +.
T Consensus 347 qlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY------------------------------------F~ 390 (557)
T KOG3785|consen 347 QLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY------------------------------------FT 390 (557)
T ss_pred HHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------------hc
Confidence 766655544555555666777776666777766666655432 22
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhcCCCC---CceecHHH-HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047992 533 SSLPVMNSLIDTYAKSGNIVYSRTIFDGMSSK---DIITWNSL-ICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSII 608 (868)
Q Consensus 533 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~---d~~~~~~l-i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 608 (868)
.|....-.+.++++..|+..+|.++|-++..+ |-.+|-+| ...|.++|+++-|.+++-++.. ..+..+...++
T Consensus 391 NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlI 467 (557)
T KOG3785|consen 391 NDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLI 467 (557)
T ss_pred CcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHH
Confidence 22222223455555556666666666555432 33444333 3445555666655555443321 12223333322
Q ss_pred -HHhhccCChHHHHHHHHHhhhhcCCCCChhHH
Q 047992 609 -LAHSLAGMVDLGKKVFCSITECYQIIPMIEHY 640 (868)
Q Consensus 609 -~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y 640 (868)
.-|...|..--|-+.|+.+.. ..|+++.|
T Consensus 468 An~CYk~~eFyyaaKAFd~lE~---lDP~pEnW 497 (557)
T KOG3785|consen 468 ANDCYKANEFYYAAKAFDELEI---LDPTPENW 497 (557)
T ss_pred HHHHHHHHHHHHHHHhhhHHHc---cCCCcccc
Confidence 345555655555555554442 45555544
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.13 E-value=2e-05 Score=85.21 Aligned_cols=530 Identities=15% Similarity=0.143 Sum_probs=258.1
Q ss_pred hCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHcCChHHHHH
Q 047992 134 RDQRWREVVELFFLMVQDGLFPDDFLFPKILQACGNCGDFEAGKLMHSLVIKLGMSCVRRVRNSVLAVYVKCGKLIWARR 213 (868)
Q Consensus 134 ~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 213 (868)
....|.+|+.+++.+.... .-+.-|..+...|+..|+++.|.+++-.. ...+-.|.||.+.|++++|.+
T Consensus 744 ~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~k 812 (1636)
T KOG3616|consen 744 GAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFK 812 (1636)
T ss_pred hhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHH
Confidence 4455666677766665432 22345777778888888888888777432 234667888888888888888
Q ss_pred HHhhcCCC--ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCccChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 047992 214 FFESMDEK--DGVAWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQLGQCDVAMEMVKRMESLGITP 291 (868)
Q Consensus 214 ~f~~~~~~--d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 291 (868)
+-++...| ..++|-+-..-+-+.|++.+|.+++-... .|+ ..|.+|-+.|..++.+++..+---. .
T Consensus 813 la~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~h~d---~ 880 (1636)
T KOG3616|consen 813 LAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKHHGD---H 880 (1636)
T ss_pred HHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHhChh---h
Confidence 87776555 34456666666677788888777764433 222 3467777777777777766543211 1
Q ss_pred CeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcccHHHHHHHHhchhhHHHHHHHHH--------------HHHHh
Q 047992 292 DVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHS--------------LAVKM 357 (868)
Q Consensus 292 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~--------------~~~~~ 357 (868)
-..|.-.+..-|-..|+...|..-|-+.. -|.+..+.|...+-++.+..+-. .....
T Consensus 881 l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksi 951 (1636)
T KOG3616|consen 881 LHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSI 951 (1636)
T ss_pred hhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhh
Confidence 12333444555555666666666554432 12333333333333333322211 00111
Q ss_pred CCCCCcc------HHHHHHHHHHcCCCHHHHHHHHHhcC-CCCeehHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCee
Q 047992 358 GFTDDVL------VGNSLINMYSKCEELEAAERVFDMIK-DKDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVI 430 (868)
Q Consensus 358 g~~~~~~------~~~~li~~y~~~g~~~~A~~vf~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 430 (868)
|-..-+. ....-++.-+..+.++-|..+-+-.. .+-....-.+..-+-..|++++|-+.|-+.++.+. -..
T Consensus 952 ggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaiklnt--yni 1029 (1636)
T KOG3616|consen 952 GGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNT--YNI 1029 (1636)
T ss_pred CcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhccc--ccc
Confidence 1000000 11122333333444444443332221 12222233344445567888888777776664421 112
Q ss_pred eh-------------------hhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCCh----------
Q 047992 431 TW-------------------NVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQK---------- 481 (868)
Q Consensus 431 t~-------------------~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~---------- 481 (868)
|| ...+.++.+.+++..|.++-+.--... .| ..++.-.++-...|++
T Consensus 1030 twcqavpsrfd~e~ir~gnkpe~av~mfi~dndwa~aervae~h~~~~--l~--dv~tgqar~aiee~d~~kae~fllra 1105 (1636)
T KOG3616|consen 1030 TWCQAVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAERVAEAHCEDL--LA--DVLTGQARGAIEEGDFLKAEGFLLRA 1105 (1636)
T ss_pred hhhhcccchhhHHHHHcCCChHHHHHHhhhcccHHHHHHHHHhhChhh--hH--HHHhhhhhccccccchhhhhhheeec
Confidence 22 122344555556665555544331110 11 1122222222233333
Q ss_pred ---hHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHH----HHHHHHhCCCCChhHHHHHHHHHHhcCCHHHH
Q 047992 482 ---NNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEI----HGCVLRRSLESSLPVMNSLIDTYAKSGNIVYS 554 (868)
Q Consensus 482 ---~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i----~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A 554 (868)
+-|+..|.+. ++-||.. +.|-.- -..++..+ -...++.|-. .+..+.+-..-+.+.|++..|
T Consensus 1106 nkp~i~l~yf~e~---~lw~dal------ri~kdy-lp~q~a~iqeeyek~~~k~gar-gvd~fvaqak~weq~gd~rka 1174 (1636)
T KOG3616|consen 1106 NKPDIALNYFIEA---ELWPDAL------RIAKDY-LPHQAAAIQEEYEKEALKKGAR-GVDGFVAQAKEWEQAGDWRKA 1174 (1636)
T ss_pred CCCchHHHHHHHh---ccChHHH------HHHHhh-ChhHHHHHHHHHHHHHHhcccc-ccHHHHHHHHHHHhcccHHHH
Confidence 3333333322 2333321 211110 01111111 1222333322 122233334556677777777
Q ss_pred HHHHhcCCCC---------------------------CceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 047992 555 RTIFDGMSSK---------------------------DIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSI 607 (868)
Q Consensus 555 ~~~f~~~~~~---------------------------d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 607 (868)
...+-++... |.....+...++...|..+.|.+++--.-. -.-.
T Consensus 1175 v~~~lkinrdst~nd~l~e~~~~kaadl~ikfl~~d~nme~i~aa~~al~~~~~~e~aael~l~f~~---------~kea 1245 (1636)
T KOG3616|consen 1175 VDALLKINRDSTDNDALAEHCTEKAADLSIKFLMGDENMEVIGAAGGALDEAGCHEAAAELLLLFDL---------SKEA 1245 (1636)
T ss_pred HHHHhhhccCCCCcHHHHHHHHHHHHhhhhhhcCCccchhhHHhcchhhhcccccHHHHHHHHHhhh---------HHHH
Confidence 7766655321 111111122222233333444333321110 0112
Q ss_pred HHHhhccCChHHHHHHHHHh---------------hhhcCC---CCChhHHHHHHHhhhhcCChHHHHHHHHhCCCCCCH
Q 047992 608 ILAHSLAGMVDLGKKVFCSI---------------TECYQI---IPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPIEPDS 669 (868)
Q Consensus 608 l~a~~~~g~~~~a~~~~~~m---------------~~~~~~---~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~~~~p~~ 669 (868)
+.|++....+.+|.++-+.. .+..|- --+++. -.-+|++...|++++|++--++-..+|=.
T Consensus 1246 ida~~~~eewakakqvake~~p~~~~~idk~yke~lknegkl~eli~vdv-iaaidl~ien~qwdk~idtak~qnykpil 1324 (1636)
T KOG3616|consen 1246 IDAFCEAEEWAKAKQVAKELDPEMEDEIDKHYKEFLKNEGKLDELIDVDV-IAAIDLMIENDQWDKAIDTAKKQNYKPIL 1324 (1636)
T ss_pred HHHHHhHHHHHHHHHHHHHhCchhhHHHHHHHHHHHhccCccccccchhH-HHHHHHHHhcccHHHHHHHHHhcccHHHH
Confidence 34445555555554443322 111111 011221 23468899999999999998888777766
Q ss_pred HHHHHHHHHHHh-cCCHHHHHHHHHHHh-ccCCCCchhHHHH-HHHHhhcC-CChhH
Q 047992 670 SIWEALLTACRI-HGNIDLAVLAIERLF-DLEPGDVLIQRLI-LQIYAICG-KPEDA 722 (868)
Q Consensus 670 ~~w~~ll~a~~~-~~~~~~a~~~~~~~~-~l~p~~~~~~~~l-~~~y~~~g-~~~~a 722 (868)
.-|-++-.+..+ .|+...+..++++-= -.+|.|-..|-++ -.+.++-| +.+||
T Consensus 1325 ~kyva~yaa~li~~~d~aq~lal~~q~ga~anpanfniyk~i~ed~lakpgt~~~ea 1381 (1636)
T KOG3616|consen 1325 DKYVALYAAHLIHEGDLAQALALLEQHGAPANPANFNIYKLIFEDMLAKPGTNCAEA 1381 (1636)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHhCCCCCcccccHHHHHHHHHhcCCCcchHHH
Confidence 666666666544 478888888777653 3567777777554 33555544 44444
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.1e-06 Score=91.22 Aligned_cols=433 Identities=16% Similarity=0.185 Sum_probs=260.7
Q ss_pred HHHHHHHHcCChHHHHHHHhhcCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCccChhhHHHHHHHHHhcCChH
Q 047992 197 SVLAVYVKCGKLIWARRFFESMDEKDG-VAWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQLGQCD 275 (868)
Q Consensus 197 ~li~~y~~~g~~~~A~~~f~~~~~~d~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 275 (868)
..|.||....++++|..+-+....|.. ..-.+.+.++...|+-++|-++-. +.----+.|..|.+.|...
T Consensus 562 ~aigmy~~lhkwde~i~lae~~~~p~~eklk~sy~q~l~dt~qd~ka~elk~---------sdgd~laaiqlyika~~p~ 632 (1636)
T KOG3616|consen 562 EAIGMYQELHKWDEAIALAEAKGHPALEKLKRSYLQALMDTGQDEKAAELKE---------SDGDGLAAIQLYIKAGKPA 632 (1636)
T ss_pred HHHHHHHHHHhHHHHHHHHHhcCChHHHHHHHHHHHHHHhcCchhhhhhhcc---------ccCccHHHHHHHHHcCCch
Confidence 456677777777777776655444421 122344455555666666554321 1111234567788888877
Q ss_pred HHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcccHHHHHHHHhchhhHHHHHHHHHHHH
Q 047992 276 VAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLAV 355 (868)
Q Consensus 276 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~ 355 (868)
.|.+....=.. +..|......+..++.+..-+++|-++|+++.. +...+..+.+-..+..+.++-+..
T Consensus 633 ~a~~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfeki~d---------~dkale~fkkgdaf~kaielarfa- 700 (1636)
T KOG3616|consen 633 KAARAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKIHD---------FDKALECFKKGDAFGKAIELARFA- 700 (1636)
T ss_pred HHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC---------HHHHHHHHHcccHHHHHHHHHHhh-
Confidence 77655422111 112555666666777777777777777777632 222333333333334444332221
Q ss_pred HhCCCCCcc-HHHHHHHHHHcCCCHHHHHHHHHhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCeeehhh
Q 047992 356 KMGFTDDVL-VGNSLINMYSKCEELEAAERVFDMIKDKDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNV 434 (868)
Q Consensus 356 ~~g~~~~~~-~~~~li~~y~~~g~~~~A~~vf~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 434 (868)
++..++ .-..-.+-+...|+++.|..-|-+... .-..|.+......+.+|+.+++.++.... -.--|..
T Consensus 701 ---fp~evv~lee~wg~hl~~~~q~daainhfiea~~-----~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~ 770 (1636)
T KOG3616|consen 701 ---FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC-----LIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGE 770 (1636)
T ss_pred ---CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh-----HHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchH
Confidence 111111 111222333345666666655543221 11234455667788888888888886542 2334667
Q ss_pred HHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchh
Q 047992 435 LISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLV 514 (868)
Q Consensus 435 li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~ 514 (868)
+.+-|+..|+++.|.++|.+.- .++--|..|.++|++++|..+-.+.. .|..
T Consensus 771 iadhyan~~dfe~ae~lf~e~~----------~~~dai~my~k~~kw~da~kla~e~~----~~e~-------------- 822 (1636)
T KOG3616|consen 771 IADHYANKGDFEIAEELFTEAD----------LFKDAIDMYGKAGKWEDAFKLAEECH----GPEA-------------- 822 (1636)
T ss_pred HHHHhccchhHHHHHHHHHhcc----------hhHHHHHHHhccccHHHHHHHHHHhc----Cchh--------------
Confidence 7788999999999999987652 35567888999999999988877653 2221
Q ss_pred chHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCceecHHHHHHHHhcCChHHHHHHHHHHHH
Q 047992 515 ASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMSSKDIITWNSLICGYVLHGFWHAALDLFDQMKS 594 (868)
Q Consensus 515 ~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 594 (868)
....|-+-..-.-+.|++.+|.+++-.+..||. .|..|-+||..+..+++.++
T Consensus 823 -------------------t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k--- 875 (1636)
T KOG3616|consen 823 -------------------TISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEK--- 875 (1636)
T ss_pred -------------------HHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHH---
Confidence 222333444455677888888888888877775 46788899999888888776
Q ss_pred CCCCCCH--HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhCCC---CCC-
Q 047992 595 FGLKPNR--GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPI---EPD- 668 (868)
Q Consensus 595 ~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~~~---~p~- 668 (868)
..||. .|...+..-+...|++.+|...|-...+ |..-|.+|-.++.+++|..+-+.-.- +..
T Consensus 876 --~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d----------~kaavnmyk~s~lw~dayriaktegg~n~~k~v 943 (1636)
T KOG3616|consen 876 --HHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD----------FKAAVNMYKASELWEDAYRIAKTEGGANAEKHV 943 (1636)
T ss_pred --hChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh----------HHHHHHHhhhhhhHHHHHHHHhccccccHHHHH
Confidence 34554 4666666677788899888888776554 67778888889999999888776421 111
Q ss_pred HHHHHHHHHH------HHhcCCHHHHHHHH------HHHhc-----cCCCCchhHHHHHHHHhhcCCChhHHHHHH
Q 047992 669 SSIWEALLTA------CRIHGNIDLAVLAI------ERLFD-----LEPGDVLIQRLILQIYAICGKPEDALKVRK 727 (868)
Q Consensus 669 ~~~w~~ll~a------~~~~~~~~~a~~~~------~~~~~-----l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 727 (868)
...|.--+++ .-+||-++.|...+ +-+++ ....-+..++-|+.-+...|++++|.+-+-
T Consensus 944 ~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyv 1019 (1636)
T KOG3616|consen 944 AFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYV 1019 (1636)
T ss_pred HHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhH
Confidence 1244332221 23455555554322 12222 223346778889999999999999987543
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.10 E-value=9.2e-08 Score=98.68 Aligned_cols=80 Identities=15% Similarity=0.192 Sum_probs=52.6
Q ss_pred HHHHHhCCChhHHHHHHHHhHHCCCCCC-cchHHHHHHHhhCCCChHHHHHHHHHHHHhCCCCC-cchHHHHHHHHHHcC
Q 047992 129 IGAYSRDQRWREVVELFFLMVQDGLFPD-DFLFPKILQACGNCGDFEAGKLMHSLVIKLGMSCV-RRVRNSVLAVYVKCG 206 (868)
Q Consensus 129 i~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~y~~~g 206 (868)
-.-|.++|.+++|+..|...++ ..|| +..|...--++...|+++.+.+--...+... |+ +-++..-..++-..|
T Consensus 122 GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~E~lg 197 (606)
T KOG0547|consen 122 GNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAHEQLG 197 (606)
T ss_pred hhhhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHHHhhc
Confidence 3456788889999999988886 4688 5555555556677888887776655555443 32 334444555666667
Q ss_pred ChHHHH
Q 047992 207 KLIWAR 212 (868)
Q Consensus 207 ~~~~A~ 212 (868)
++++|.
T Consensus 198 ~~~eal 203 (606)
T KOG0547|consen 198 KFDEAL 203 (606)
T ss_pred cHHHHH
Confidence 666654
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.7e-07 Score=91.91 Aligned_cols=292 Identities=15% Similarity=0.211 Sum_probs=188.1
Q ss_pred cchHHHHHHHHhCCChhHHHHHHHHHhhcCCCCCcccHHHHHHHHhccCChHHHHHHHHHh-hhc-CCCC--hhhhhHHH
Q 047992 23 RFRDTHLDFLCGNGRLNEAITVLDSIATQGAKVRRNTYINLLQACIDSNSIHLARKLHAFL-NLV-TEID--VFVKTKLL 98 (868)
Q Consensus 23 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~i~~~~-~~~-~~~~--~~~~~~li 98 (868)
+.|-.-++.+ -+.+++.|.++|-.|.+... .+.++-..|-+.+.+.|..+.|.+||+.+ .+. +..+ ......|.
T Consensus 37 r~Yv~GlNfL-Ls~Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~ 114 (389)
T COG2956 37 RDYVKGLNFL-LSNQPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLG 114 (389)
T ss_pred HHHHhHHHHH-hhcCcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 3444444543 34789999999999987532 23344455566777889999999999998 332 2222 23456677
Q ss_pred HHHHhcCChhHHHHHHhhcCCCCce---eHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcc----hHHHHHHHhhCCC
Q 047992 99 SVYAKCGCLDDAREVFEDMRERNLY---TWSAMIGAYSRDQRWREVVELFFLMVQDGLFPDDF----LFPKILQACGNCG 171 (868)
Q Consensus 99 ~~~~~~g~~~~A~~~f~~~~~~~~~---~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~----t~~~ll~~~~~~~ 171 (868)
.-|.+.|-++.|..+|....+-+.+ +-..|+..|-...+|++|++.-+++...|-++..+ .|.-+........
T Consensus 115 ~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~ 194 (389)
T COG2956 115 RDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASS 194 (389)
T ss_pred HHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhh
Confidence 8899999999999999988764443 45678889999999999999999988766555443 3445555555566
Q ss_pred ChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHcCChHHHHHHHhhcCCCChh----hHHHHHHHHHhcCChhHHHHHHH
Q 047992 172 DFEAGKLMHSLVIKLGMSCVRRVRNSVLAVYVKCGKLIWARRFFESMDEKDGV----AWNSMISGYFQIGENDEAHRLFD 247 (868)
Q Consensus 172 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~----~~~~li~~~~~~g~~~~A~~l~~ 247 (868)
+++.|..++....+.. +..+.+.-.+.+.+...|+++.|.+.++.+.+.|.. .-..+..+|.+.|+.++....+.
T Consensus 195 ~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~ 273 (389)
T COG2956 195 DVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLR 273 (389)
T ss_pred hHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 7777777777776655 233444455666777777777777777777666543 45666677777777777777777
Q ss_pred HHHHcCCccChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhc---CChhHHHHHHHHHHh
Q 047992 248 KMCREEIKLGVVTFNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQN---GRTSQALDLFKEMSF 321 (868)
Q Consensus 248 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~---g~~~~A~~l~~~m~~ 321 (868)
++.+... +...-..+-..-....-.+.|...+.+-..+ +|+...+..+|..-... |...+.+.+++.|..
T Consensus 274 ~~~~~~~--g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 274 RAMETNT--GADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred HHHHccC--CccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 7766432 2223333333333333444444444443333 35666666666554432 334555555555543
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.05 E-value=9.1e-08 Score=96.85 Aligned_cols=285 Identities=13% Similarity=0.105 Sum_probs=169.4
Q ss_pred CCCHHHHHHHHHhcCC---CCeehHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCeeehhhHHHHHHhcCCHHHHHHHH
Q 047992 376 CEELEAAERVFDMIKD---KDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNVLISGYIQNGNEDEAVDLF 452 (868)
Q Consensus 376 ~g~~~~A~~vf~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~f 452 (868)
.|++..|++...+-.+ ..+..|..-+.+--+.|+.+.+-.++.+..+..-.++...+-+........|++..|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 4677777777665443 2233344444555666777777777777765532333444455556667778888888777
Q ss_pred HhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCC
Q 047992 453 QRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLE 532 (868)
Q Consensus 453 ~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~ 532 (868)
+++.+.. +.++........+|.+.|++.+.+.++..|.+.|+--|+..-.-
T Consensus 177 ~~ll~~~--pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~l--------------------------- 227 (400)
T COG3071 177 DQLLEMT--PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARL--------------------------- 227 (400)
T ss_pred HHHHHhC--cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHH---------------------------
Confidence 7776654 56667777788888888888888888888887776544321100
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047992 533 SSLPVMNSLIDTYAKSGNIVYSRTIFDGMSS---KDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIIL 609 (868)
Q Consensus 533 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 609 (868)
...+++.+++=....+..+.-..-++..+. .++..-.+++.-+.+.|+.++|.++.++..+.+..|+-.++ .
T Consensus 228 -e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~----~ 302 (400)
T COG3071 228 -EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRL----I 302 (400)
T ss_pred -HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHH----H
Confidence 011222333322222333333334444442 23444455566666777777777777777776666552221 1
Q ss_pred HhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 047992 610 AHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPIEPDSSIWEALLTACRIHGNIDLAV 689 (868)
Q Consensus 610 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~~~~p~~~~w~~ll~a~~~~~~~~~a~ 689 (868)
.|..-|+.+.= .+-+++-++..|..| ..|.+|...|.+++.+.+|.
T Consensus 303 ~~l~~~d~~~l--------------------------------~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~ 348 (400)
T COG3071 303 PRLRPGDPEPL--------------------------------IKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKAS 348 (400)
T ss_pred hhcCCCCchHH--------------------------------HHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHH
Confidence 22222222222 223334444444444 56777777778888888888
Q ss_pred HHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHH
Q 047992 690 LAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLE 729 (868)
Q Consensus 690 ~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 729 (868)
.+++.+++..|+ ...|..|+..|.+.|+..+|..+|+.-
T Consensus 349 ~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~ 387 (400)
T COG3071 349 EALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREA 387 (400)
T ss_pred HHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHH
Confidence 888877777774 566777788888888888777776654
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.05 E-value=7.9e-08 Score=97.28 Aligned_cols=286 Identities=11% Similarity=0.069 Sum_probs=187.0
Q ss_pred CChhHHHHHHHHHHhCCccCCcccHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHcCCCHHHHHHHH
Q 047992 307 GRTSQALDLFKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEELEAAERVF 386 (868)
Q Consensus 307 g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~vf 386 (868)
|+|.+|.++..+-.+.+-.| ...|.....+....|+.+.+-..+.++.+..-.++..+.-+........|++..|+.-.
T Consensus 98 G~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 98 GDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred CcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 44555555544443333222 12233344444555555555555555555433445555555666666677777776665
Q ss_pred HhcC---CCCeehHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCe-------eehhhHHHHHHhcCCHHHHHHHHHhcc
Q 047992 387 DMIK---DKDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNV-------ITWNVLISGYIQNGNEDEAVDLFQRMG 456 (868)
Q Consensus 387 ~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-------~t~~~li~~~~~~g~~~~A~~~f~~m~ 456 (868)
+.+. .+++.........|.+.|++.....++..|.+.|.--|+ .+|+.+++-....+..+.-...+++..
T Consensus 177 ~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~p 256 (400)
T COG3071 177 DQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQP 256 (400)
T ss_pred HHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhcc
Confidence 5544 345666777777777777777777777777777654432 456677766666666666666777776
Q ss_pred cCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChh
Q 047992 457 KNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLP 536 (868)
Q Consensus 457 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~ 536 (868)
.+- +.++..-.+++.-+.+.|+.++|.++..+..+.+..|.- ..+-.|...++.+.-.+..+.-++. .+.++.
T Consensus 257 r~l--r~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p~ 329 (400)
T COG3071 257 RKL--RNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQ-HPEDPL 329 (400)
T ss_pred HHh--hcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHh-CCCChh
Confidence 543 445666677888888999999999999988888777772 2233455566665555555554442 334567
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCC--CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 047992 537 VMNSLIDTYAKSGNIVYSRTIFDGMS--SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPN 600 (868)
Q Consensus 537 ~~~~Li~~y~k~g~~~~A~~~f~~~~--~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 600 (868)
++.+|...|.|.+.+.+|...|+... .++...|+-+..++.+.|+..+|.+.+++.+..-..|+
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 88888999999999999999988654 56788888888888888988888888888765433443
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.2e-05 Score=85.81 Aligned_cols=560 Identities=13% Similarity=0.160 Sum_probs=283.9
Q ss_pred HHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHcCCh
Q 047992 129 IGAYSRDQRWREVVELFFLMVQDGLFPDDFLFPKILQACGNCGDFEAGKLMHSLVIKLGMSCVRRVRNSVLAVYVKCGKL 208 (868)
Q Consensus 129 i~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 208 (868)
+.+|+..|.+++++-.. .+.|..|| |-.+|+...+ -+.+.+.+....+..... ...-.+.+++.+......
T Consensus 488 i~cfAE~Gqf~KiilY~---kKvGyTPd---ymflLq~l~r-~sPD~~~qFa~~l~Q~~~--~~~die~I~DlFme~N~i 558 (1666)
T KOG0985|consen 488 IQCFAETGQFKKIILYA---KKVGYTPD---YMFLLQQLKR-SSPDQALQFAMMLVQDEE--PLADIEQIVDLFMELNLI 558 (1666)
T ss_pred HHHHHHhcchhHHHHHH---HHcCCCcc---HHHHHHHHHc-cChhHHHHHHHHhhccCC--CcccHHHHHHHHHHHHhh
Confidence 33444444444433222 23466666 3344554444 345566665555554321 222334555555555555
Q ss_pred HHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCccChhhHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 047992 209 IWARRFFESMDEKDGVAWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQLGQCDVAMEMVKRMESLG 288 (868)
Q Consensus 209 ~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 288 (868)
..+..++-.....|...-..+-.-+... +.-.|-++-+.+...+. -+..-+..+.+.|.+.|-...|++.+..+.+.
T Consensus 559 Qq~TSFLLdaLK~~~Pd~g~LQTrLLE~-NL~~aPqVADAILgN~m-FtHyDra~IAqLCEKAGL~qraLehytDl~DI- 635 (1666)
T KOG0985|consen 559 QQCTSFLLDALKLNSPDEGHLQTRLLEM-NLVHAPQVADAILGNDM-FTHYDRAEIAQLCEKAGLLQRALEHYTDLYDI- 635 (1666)
T ss_pred hhhHHHHHHHhcCCChhhhhHHHHHHHH-HhccchHHHHHHHhccc-cccccHHHHHHHHHhcchHHHHHHhcccHHHH-
Confidence 5555444333332222111111000000 00011122222222211 12233677788899999999999888776542
Q ss_pred CCCCeeeHH-----HHHHHHHhcCChhHHHHHHHHHHhCCccCCcccHHHHHHHHhchhhHHHHHHHHHHHHH-------
Q 047992 289 ITPDVFTWT-----CMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLAVK------- 356 (868)
Q Consensus 289 ~~p~~~~~~-----~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~------- 356 (868)
+ ..+..+ -.+-.|.-.-.++.+++.++.|...+++.|..+...+..-|...-..+...++++....
T Consensus 636 -K-R~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yf 713 (1666)
T KOG0985|consen 636 -K-RVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYF 713 (1666)
T ss_pred -H-HHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHH
Confidence 0 111111 12445556667889999999999888888877766665555544444444444443322
Q ss_pred ----hCCCCCccHHHHHHHHHHcCCCHHHHHHHHHhcCC-------------------C-----CeehHH----------
Q 047992 357 ----MGFTDDVLVGNSLINMYSKCEELEAAERVFDMIKD-------------------K-----DVYSWN---------- 398 (868)
Q Consensus 357 ----~g~~~~~~~~~~li~~y~~~g~~~~A~~vf~~~~~-------------------~-----~~~~~~---------- 398 (868)
.++..|+.+.-..|.+-++.|++.+.+++.+.-.- | |..-+-
T Consensus 714 LgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrn 793 (1666)
T KOG0985|consen 714 LGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRN 793 (1666)
T ss_pred HHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHh
Confidence 14567777888899999999999999888764331 0 111111
Q ss_pred ---HHHHHHHhcCChhHHHHHHHHhHhCCCCC-----------CeeehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCC
Q 047992 399 ---SMIAGYCQAGYCGKAYELFIKMQESDVPP-----------NVITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRN 464 (868)
Q Consensus 399 ---~li~~~~~~g~~~~A~~l~~~m~~~g~~p-----------~~~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~ 464 (868)
..|..|.+.=+..+.-.+...+..-.+.- ..+....|+.-.-+.++..--..+++.....+ ..+
T Consensus 794 n~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG--~~d 871 (1666)
T KOG0985|consen 794 NLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEG--SQD 871 (1666)
T ss_pred hHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhcc--Ccc
Confidence 12333333322222222222222111100 11112334444555666666666777766665 567
Q ss_pred eeehhhhHHHHHhcCChhH-HHH---HHHHhhc----CCCCCCH--H------hHHHHHHHHhchhchHHHHHHHHHHHH
Q 047992 465 TASWNSLIAGYQQLGQKNN-ALG---VFRKMQS----SCFYPNC--V------TILSVLPACAYLVASNKVKEIHGCVLR 528 (868)
Q Consensus 465 ~~~~~~li~~~~~~g~~~~-A~~---~~~~m~~----~g~~p~~--~------t~~~ll~a~~~~~~~~~~~~i~~~~~~ 528 (868)
..++|+|...|...++-.+ -+. .|+...- ..-.|.. + .-.-+++.|-....+. ..-.++++
T Consensus 872 ~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK---~~aRYlv~ 948 (1666)
T KOG0985|consen 872 PATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFK---SQARYLVE 948 (1666)
T ss_pred hHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHH---HHHHHHHh
Confidence 7888888888876554322 111 0000000 0000000 0 0011122221111110 11111111
Q ss_pred hCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcC-----C-CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCC------
Q 047992 529 RSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGM-----S-SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFG------ 596 (868)
Q Consensus 529 ~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~-----~-~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g------ 596 (868)
..|..+|+..+.- .-..-+++.++. + ..|+..-+.-..++...+-+.+-++++++..-..
T Consensus 949 ---R~D~~LW~~VL~e-----~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~ 1020 (1666)
T KOG0985|consen 949 ---RSDPDLWAKVLNE-----ENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEN 1020 (1666)
T ss_pred ---ccChHHHHHHHhc-----cChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccc
Confidence 1122222222210 000001111111 1 1344444555667777777777777777765321
Q ss_pred -----------CCCCHH---HHH---------HHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCCh
Q 047992 597 -----------LKPNRG---TFL---------SIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKL 653 (868)
Q Consensus 597 -----------~~p~~~---t~~---------~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~ 653 (868)
++.|.. .|. .+...+...++++||..+|+.... +...... +...-|.+
T Consensus 1021 ~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~------n~~A~~V---Lie~i~~l 1091 (1666)
T KOG0985|consen 1021 RNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDM------NVSAIQV---LIENIGSL 1091 (1666)
T ss_pred hhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcc------cHHHHHH---HHHHhhhH
Confidence 111110 011 122345677888999988885422 2222222 23356889
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHHhc
Q 047992 654 EEAMEFIEDMPIEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLEREN 732 (868)
Q Consensus 654 ~eA~~~i~~~~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 732 (868)
|.|.++-++. ..+.+|..|..|-...|.+..|...+-+ .+|++.|.-..++-.+.|+|+|-.+...+.+.+
T Consensus 1092 dRA~efAe~~---n~p~vWsqlakAQL~~~~v~dAieSyik-----adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk 1162 (1666)
T KOG0985|consen 1092 DRAYEFAERC---NEPAVWSQLAKAQLQGGLVKDAIESYIK-----ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKK 1162 (1666)
T ss_pred HHHHHHHHhh---CChHHHHHHHHHHHhcCchHHHHHHHHh-----cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 9999999886 3467899999999999999999877744 478999999999999999999999976655543
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.03 E-value=2e-06 Score=87.07 Aligned_cols=273 Identities=15% Similarity=0.105 Sum_probs=155.2
Q ss_pred CCCCCccHHHHHHHHHHcCCCHHHHHHHHHhcCCCCeehHHHH---HHHHHhcCChhHHHHHHHHhHhCCCCCCeeehhh
Q 047992 358 GFTDDVLVGNSLINMYSKCEELEAAERVFDMIKDKDVYSWNSM---IAGYCQAGYCGKAYELFIKMQESDVPPNVITWNV 434 (868)
Q Consensus 358 g~~~~~~~~~~li~~y~~~g~~~~A~~vf~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 434 (868)
-++.++....++.+.|...|+.++|...|+....-|+.+..+| ...+.+.|+++....+...+.... +-....|-.
T Consensus 227 ~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV 305 (564)
T KOG1174|consen 227 TLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFV 305 (564)
T ss_pred cCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhh
Confidence 3566677777788888888888888888877665444433332 223344555555555544444211 001111222
Q ss_pred HHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchh
Q 047992 435 LISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLV 514 (868)
Q Consensus 435 li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~ 514 (868)
-........+++.|+.+-++..... +.+...+-.-...+.+.|++++|.-.|+..+.
T Consensus 306 ~~~~l~~~K~~~rAL~~~eK~I~~~--~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--------------------- 362 (564)
T KOG1174|consen 306 HAQLLYDEKKFERALNFVEKCIDSE--PRNHEALILKGRLLIALERHTQAVIAFRTAQM--------------------- 362 (564)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhccC--cccchHHHhccHHHHhccchHHHHHHHHHHHh---------------------
Confidence 2222233444555555544443322 22222222222334444444444444444331
Q ss_pred chHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCceecHHHHHHHHhcCChHHHHHHHHHHHH
Q 047992 515 ASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMSSKDIITWNSLICGYVLHGFWHAALDLFDQMKS 594 (868)
Q Consensus 515 ~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 594 (868)
+. +-+..+|..++..|...|+..||.-+-+....
T Consensus 363 ----------------La------------------------------p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~ 396 (564)
T KOG1174|consen 363 ----------------LA------------------------------PYRLEIYRGLFHSYLAQKRFKEANALANWTIR 396 (564)
T ss_pred ----------------cc------------------------------hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Confidence 11 22444555555555555555555554444433
Q ss_pred CCCCCC-HHHHHHHH-HHhh-ccCChHHHHHHHHHhhhhcCCCCC-hhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCCH
Q 047992 595 FGLKPN-RGTFLSII-LAHS-LAGMVDLGKKVFCSITECYQIIPM-IEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPDS 669 (868)
Q Consensus 595 ~g~~p~-~~t~~~ll-~a~~-~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~~ 669 (868)
.-|+ ..+..-+. ..|. ....-++|++++++-. .+.|+ ......+..++.+.|+.+++..++++. ...||.
T Consensus 397 --~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~ 471 (564)
T KOG1174|consen 397 --LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV 471 (564)
T ss_pred --HhhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc
Confidence 1222 22222221 1221 1223477888887654 35665 335566778999999999999999987 778999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchh
Q 047992 670 SIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLI 705 (868)
Q Consensus 670 ~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~ 705 (868)
...+.|....+..+.+..|...+..++.++|+|-.+
T Consensus 472 ~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~s 507 (564)
T KOG1174|consen 472 NLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRT 507 (564)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHH
Confidence 999999999999999999999999999999987543
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1e-07 Score=93.47 Aligned_cols=308 Identities=14% Similarity=0.088 Sum_probs=176.4
Q ss_pred cCChhHHHHHHHHhHhCCCCCCeeeh---hhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCe--eehhhhHHHHHhcCCh
Q 047992 407 AGYCGKAYELFIKMQESDVPPNVITW---NVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNT--ASWNSLIAGYQQLGQK 481 (868)
Q Consensus 407 ~g~~~~A~~l~~~m~~~g~~p~~~t~---~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~--~~~~~li~~~~~~g~~ 481 (868)
+.+.++|.++|-+|.+. |..|+ -+|.+.|-+.|..+.|+++.+.+.+....+-+. .....|..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~----d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQE----DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhc----CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhh
Confidence 35566666666666643 33333 456666777777777777777765532221111 1223345556677777
Q ss_pred hHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCC-h---hHHHHHHHHHHhcCCHHHHHHH
Q 047992 482 NNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESS-L---PVMNSLIDTYAKSGNIVYSRTI 557 (868)
Q Consensus 482 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~-~---~~~~~Li~~y~k~g~~~~A~~~ 557 (868)
|.|..+|..+.+.|.. -......++.-|-...++++|..+-..+.+.+-++. + ..|.-|...+.-..+.+.|+.+
T Consensus 124 DRAE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 124 DRAEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hHHHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 7777777776653321 122344555556666666666666666666444332 1 2344566666666777777777
Q ss_pred HhcCCCC---CceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhhccCChHHHHHHHHHhhhhcC
Q 047992 558 FDGMSSK---DIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR--GTFLSIILAHSLAGMVDLGKKVFCSITECYQ 632 (868)
Q Consensus 558 f~~~~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 632 (868)
+.+..+- .+..=-.+...+...|++..|++.++...+. .|+- -+...+..+|.+.|+.+++..++..+.+.
T Consensus 203 l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ--n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~-- 278 (389)
T COG2956 203 LKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQ--NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET-- 278 (389)
T ss_pred HHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHh--ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--
Confidence 7766532 2333333445566777777788777777773 4443 33445556667777777777777666552
Q ss_pred CCCChhHHHHHHHhhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHH
Q 047992 633 IIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPIEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQI 712 (868)
Q Consensus 633 ~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~ 712 (868)
.|..+.-..|.++.....- .+.|.....+-+.-.|.--+.|-++-.-
T Consensus 279 -~~g~~~~l~l~~lie~~~G--------------------------------~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~ 325 (389)
T COG2956 279 -NTGADAELMLADLIELQEG--------------------------------IDAAQAYLTRQLRRKPTMRGFHRLMDYH 325 (389)
T ss_pred -cCCccHHHHHHHHHHHhhC--------------------------------hHHHHHHHHHHHhhCCcHHHHHHHHHhh
Confidence 2222222233332222222 2333333344444444444444444333
Q ss_pred Hh--hcCCChhHHHHHHHHHhcCCCCCCcccEEEEcCEEEEEEeCC
Q 047992 713 YA--ICGKPEDALKVRKLERENTRRNSFGQCWIEVKNLVYTFVTGG 756 (868)
Q Consensus 713 y~--~~g~~~~a~~~~~~m~~~~~~k~~g~s~i~~~~~~~~f~~~d 756 (868)
.+ +-|+|.+...+.+.|....++..|-+-.-.-+-+.|.|...-
T Consensus 326 l~daeeg~~k~sL~~lr~mvge~l~~~~~YRC~~CGF~a~~l~W~C 371 (389)
T COG2956 326 LADAEEGRAKESLDLLRDMVGEQLRRKPRYRCQNCGFTAHTLYWHC 371 (389)
T ss_pred hccccccchhhhHHHHHHHHHHHHhhcCCceecccCCcceeeeeeC
Confidence 33 346788888888888888888888887777788888887543
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.9e-06 Score=94.03 Aligned_cols=550 Identities=13% Similarity=0.041 Sum_probs=262.0
Q ss_pred hhhhHHHHHHHhcCChhHHHHHHhhcCCC---CceeHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCC---cchHHHHHH
Q 047992 92 FVKTKLLSVYAKCGCLDDAREVFEDMRER---NLYTWSAMIGAYSRDQRWREVVELFFLMVQDGLFPD---DFLFPKILQ 165 (868)
Q Consensus 92 ~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~---~~t~~~ll~ 165 (868)
..+..|...|...-+...|.+.|+...+- +..+|......|++..++++|..+.-..-+. .|- ...+..+--
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qk--a~a~~~k~nW~~rG~ 570 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQK--APAFACKENWVQRGP 570 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhh--chHHHHHhhhhhccc
Confidence 45677778888777888899999887653 4567888999999999999998883322211 111 111222222
Q ss_pred HhhCCCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHcCChHHHHHHHhhcCCCChhhHHHH---HHHHHhcCChhHH
Q 047992 166 ACGNCGDFEAGKLMHSLVIKLGMSCVRRVRNSVLAVYVKCGKLIWARRFFESMDEKDGVAWNSM---ISGYFQIGENDEA 242 (868)
Q Consensus 166 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~l---i~~~~~~g~~~~A 242 (868)
.+-..++...+..-++...+.. +.|...|..|..+|..+|....|.++|++...-++.+|-.- ...-+..|.+.+|
T Consensus 571 yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkea 649 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEA 649 (1238)
T ss_pred cccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHH
Confidence 2445556666666666666654 35677888888888888888888888877665544433221 2223456788888
Q ss_pred HHHHHHHHHcC------CccChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHH
Q 047992 243 HRLFDKMCREE------IKLGVVTFNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLF 316 (868)
Q Consensus 243 ~~l~~~m~~~g------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~ 316 (868)
+..+......- ..--..++--+...+.-.|-...|...|+.- ++.|
T Consensus 650 ld~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eks----------------------------ie~f 701 (1238)
T KOG1127|consen 650 LDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKS----------------------------IESF 701 (1238)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHH----------------------------HHHH
Confidence 87777665320 0001111111111222222222222222221 1111
Q ss_pred HHHHhCCccCCcccHHHHHHHHhchhhHH--H-H----HHHHHHHHHhCCCCCccHHHHHHHHHHcCCCHHHHHHHHHhc
Q 047992 317 KEMSFVGVMPNGVTITSAISACTDLKALA--M-G----MEIHSLAVKMGFTDDVLVGNSLINMYSKCEELEAAERVFDMI 389 (868)
Q Consensus 317 ~~m~~~g~~pd~~t~~~ll~a~~~~~~~~--~-a----~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~vf~~~ 389 (868)
.-...+....+...+..+-.+|.-.-..+ . . .-+..+..+.+..++.. ++..-.+|+-.. .+ -+
T Consensus 702 ~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d----~l~Lg~~c~~~h--ls---l~ 772 (1238)
T KOG1127|consen 702 IVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKND----LLFLGYECGIAH--LS---LA 772 (1238)
T ss_pred HHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchh----HHHHHHHHhhHH--HH---Hh
Confidence 11111111111111111111111110000 0 0 00000111222221111 111111111100 00 00
Q ss_pred CCCCeehHHHHHHHHHh----c----CChhHHHHHHHHhHhCCCCCCeeehhhHHHHHHhcCCHHHHHHHHHhcccCCCC
Q 047992 390 KDKDVYSWNSMIAGYCQ----A----GYCGKAYELFIKMQESDVPPNVITWNVLISGYIQNGNEDEAVDLFQRMGKNDKV 461 (868)
Q Consensus 390 ~~~~~~~~~~li~~~~~----~----g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~ 461 (868)
.+..+|..+...|.+ . .+...|+..+.+-.+.. .-+..+||.|.-. ...|++.-|...|-.-....
T Consensus 773 --~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-- 846 (1238)
T KOG1127|consen 773 --IHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-- 846 (1238)
T ss_pred --hccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc--
Confidence 135566666555544 1 12346777777766543 2367778877655 66677877777776655443
Q ss_pred CCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCC-HHhHHHHHHHHhchhchHHHHHHHHHH--HH--hCCCCChh
Q 047992 462 KRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPN-CVTILSVLPACAYLVASNKVKEIHGCV--LR--RSLESSLP 536 (868)
Q Consensus 462 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~~~~i~~~~--~~--~~~~~~~~ 536 (868)
|....+|..+...+.++.+++.|...|...+. +.|+ ...|...----...|+.-....++..- .. .|--++..
T Consensus 847 p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS--LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~ 924 (1238)
T KOG1127|consen 847 PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS--LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQ 924 (1238)
T ss_pred ccchhheeccceeEEecccHHHhhHHHHhhhh--cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhh
Confidence 67788899999999999999999999998774 4443 222222111112233333333333331 11 11112222
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccC
Q 047992 537 VMNSLIDTYAKSGNIVYSRTIFDGMSSKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR-GTFLSIILAHSLAG 615 (868)
Q Consensus 537 ~~~~Li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g 615 (868)
.+-.-...-...|+.++-...-+.+.. |--..++... -.|+. ..|....+...|.+
T Consensus 925 Yw~c~te~h~~Ng~~e~~I~t~~ki~s---------------------As~al~~yf~--~~p~~~fAy~~~gstlEhL~ 981 (1238)
T KOG1127|consen 925 YWLCATEIHLQNGNIEESINTARKISS---------------------ASLALSYYFL--GHPQLCFAYAANGSTLEHLE 981 (1238)
T ss_pred HHHHHHHHHHhccchHHHHHHhhhhhh---------------------hHHHHHHHHh--cCcchhHHHHHHHhHHHHHH
Confidence 222222222233443333322222211 0001111111 22332 45555555555555
Q ss_pred ChHHHHHHHHHhhhhcCCCCChhHHHHH----HHhhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 047992 616 MVDLGKKVFCSITECYQIIPMIEHYSAM----IDLYGRSGKLEEAMEFIEDMPIEPDSSIWEALLTACRIHGNIDLAVLA 691 (868)
Q Consensus 616 ~~~~a~~~~~~m~~~~~~~p~~~~y~~l----vd~l~r~g~~~eA~~~i~~~~~~p~~~~w~~ll~a~~~~~~~~~a~~~ 691 (868)
...++.........-....-+...|+-. ..++...|.++.|..-....+.+.|..+-++-++. ...|+++.+...
T Consensus 982 ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~l~l-Ffkndf~~sl~~ 1060 (1238)
T KOG1127|consen 982 EYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWMEVDEDIRGTDLTL-FFKNDFFSSLEF 1060 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchhHHHHHhhhhHHH-HHHhHHHHHHHH
Confidence 5555555544433211112222223322 22333455666655555555555555554444444 344666666666
Q ss_pred HHHHhccCCCCchhHHHHHHHH
Q 047992 692 IERLFDLEPGDVLIQRLILQIY 713 (868)
Q Consensus 692 ~~~~~~l~p~~~~~~~~l~~~y 713 (868)
+++++.+.-++...-++++.+.
T Consensus 1061 fe~aLsis~se~d~vvLl~kva 1082 (1238)
T KOG1127|consen 1061 FEQALSISNSESDKVVLLCKVA 1082 (1238)
T ss_pred HHHHhhhcccccchhhhhHHHH
Confidence 6666666555554444444443
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.01 E-value=6.6e-06 Score=87.44 Aligned_cols=180 Identities=17% Similarity=0.195 Sum_probs=117.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCCC-ceecHHHH-HHHH-hcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHhh
Q 047992 538 MNSLIDTYAKSGNIVYSRTIFDGMSSKD-IITWNSLI-CGYV-LHGFWHAALDLFDQMKSFGLKPNRG--TFLSIILAHS 612 (868)
Q Consensus 538 ~~~Li~~y~k~g~~~~A~~~f~~~~~~d-~~~~~~li-~~~~-~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~ 612 (868)
-++|+.||. +..+.+++.-...+... ......++ .++- +...+.+|.+++.+.-+ -.|+.. .....+.-..
T Consensus 312 N~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~--~~p~~s~~v~L~~aQl~i 387 (652)
T KOG2376|consen 312 NNALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFAD--GHPEKSKVVLLLRAQLKI 387 (652)
T ss_pred HHHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhc--cCCchhHHHHHHHHHHHH
Confidence 456777775 44566777776666433 22233333 3322 22357888888887766 456653 3333344456
Q ss_pred ccCChHHHHHHHH--------HhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC--------CCCCCHH-HHHHH
Q 047992 613 LAGMVDLGKKVFC--------SITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM--------PIEPDSS-IWEAL 675 (868)
Q Consensus 613 ~~g~~~~a~~~~~--------~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~--------~~~p~~~-~w~~l 675 (868)
..|.++.|.+++. ++.+ .+..|.. .+.+++++.+.+.-+-|.+++.+. +.++... +|.-+
T Consensus 388 s~gn~~~A~~il~~~~~~~~ss~~~-~~~~P~~--V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~a 464 (652)
T KOG2376|consen 388 SQGNPEVALEILSLFLESWKSSILE-AKHLPGT--VGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREA 464 (652)
T ss_pred hcCCHHHHHHHHHHHhhhhhhhhhh-hccChhH--HHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHH
Confidence 7899999999998 4443 4555544 677889999888765555554433 3333322 44445
Q ss_pred HHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHH
Q 047992 676 LTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKV 725 (868)
Q Consensus 676 l~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~ 725 (868)
..--.++|+.+.|...++++++..|++....+.|.-.|+... .+.|..+
T Consensus 465 a~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d-~eka~~l 513 (652)
T KOG2376|consen 465 AEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARLD-PEKAESL 513 (652)
T ss_pred hHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcC-HHHHHHH
Confidence 555567899999999999999999999999999988887764 3444444
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.3e-08 Score=104.53 Aligned_cols=190 Identities=18% Similarity=0.133 Sum_probs=135.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHH
Q 047992 535 LPVMNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR-GTFLSIILA 610 (868)
Q Consensus 535 ~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a 610 (868)
...+..+...|.+.|+.++|...|++.. +.+...|+.+...|...|++++|++.|++.++ +.|+. .++..+..+
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~ 141 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAYLNRGIA 141 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 4567778888999999999999998654 45677899999999999999999999999988 77865 677777788
Q ss_pred hhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHH
Q 047992 611 HSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM--PIEPDSSIWEALLTACRIHGNIDLA 688 (868)
Q Consensus 611 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~--~~~p~~~~w~~ll~a~~~~~~~~~a 688 (868)
+...|++++|.+.|+...+. .|+.........++.+.++.++|.+.+++. ...|+. |..- -.....|+.+.+
T Consensus 142 l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~--~~~~-~~~~~lg~~~~~ 215 (296)
T PRK11189 142 LYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQ--WGWN-IVEFYLGKISEE 215 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccc--cHHH-HHHHHccCCCHH
Confidence 88899999999999988763 343322222223445678899999999664 223333 3311 122234444333
Q ss_pred HHHHHHH-------hccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHHhcC
Q 047992 689 VLAIERL-------FDLEPGDVLIQRLILQIYAICGKPEDALKVRKLERENT 733 (868)
Q Consensus 689 ~~~~~~~-------~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 733 (868)
.+++.+ .++.|+.+.+|..|+.+|...|++++|....+...+..
T Consensus 216 -~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 216 -TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred -HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 233333 35667778899999999999999999999877665433
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.1e-08 Score=99.71 Aligned_cols=227 Identities=15% Similarity=0.129 Sum_probs=171.3
Q ss_pred hhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhc
Q 047992 433 NVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAY 512 (868)
Q Consensus 433 ~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 512 (868)
+.+...|.+.|.+.+|.+.|+...+. .|-+.||-.|-..|.+..+++.|+.+|.+-.+ ..|-.+|+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q---~~~~dTfllLskvY~ridQP~~AL~~~~~gld--~fP~~VT~--------- 292 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ---FPHPDTFLLLSKVYQRIDQPERALLVIGEGLD--SFPFDVTY--------- 292 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc---CCchhHHHHHHHHHHHhccHHHHHHHHhhhhh--cCCchhhh---------
Confidence 55667777777777777777776654 36666777777777777777777777776553 34555554
Q ss_pred hhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHH
Q 047992 513 LVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLF 589 (868)
Q Consensus 513 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~ 589 (868)
..-....+...++.++|.++++... +.|+.+.-.+..+|.-.|+++-|+..|
T Consensus 293 -------------------------l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryY 347 (478)
T KOG1129|consen 293 -------------------------LLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYY 347 (478)
T ss_pred -------------------------hhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHH
Confidence 2333444555677778888877654 456777777888899999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhCCCCCC-
Q 047992 590 DQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPIEPD- 668 (868)
Q Consensus 590 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~~~~p~- 668 (868)
+++++.|+. +...|..+.-+|...+++|-++.-|...... | ..|+
T Consensus 348 RRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlst--------------------------------a-t~~~~ 393 (478)
T KOG1129|consen 348 RRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALST--------------------------------A-TQPGQ 393 (478)
T ss_pred HHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhh--------------------------------c-cCcch
Confidence 999998875 4566777777888888887777766654331 1 1233
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHHhc
Q 047992 669 -SSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLEREN 732 (868)
Q Consensus 669 -~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 732 (868)
..+|-.|.......||+..|.+.++-++.-||++..+++.|+-+-++.|+.++|..+....++.
T Consensus 394 aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 394 AADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred hhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 3488888888888999999999999999999999999999999999999999999998877653
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.4e-08 Score=112.99 Aligned_cols=176 Identities=12% Similarity=0.054 Sum_probs=138.8
Q ss_pred cCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCChHHHHHH
Q 047992 548 SGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR-GTFLSIILAHSLAGMVDLGKKV 623 (868)
Q Consensus 548 ~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~ 623 (868)
.|++++|...+++.. +.+...|..+...+...|++++|+..|++..+ ..|+. ..+..+..++...|+.++|...
T Consensus 317 ~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~G~~~eAi~~ 394 (553)
T PRK12370 317 QNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANL--LSPISADIKYYYGWNLFMAGQLEEALQT 394 (553)
T ss_pred chHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 355889999998765 45677899998999999999999999999999 67875 5677777889999999999999
Q ss_pred HHHhhhhcCCCCChh-HHHHHHHhhhhcCChHHHHHHHHhC--CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhccC
Q 047992 624 FCSITECYQIIPMIE-HYSAMIDLYGRSGKLEEAMEFIEDM--PIEPDSS-IWEALLTACRIHGNIDLAVLAIERLFDLE 699 (868)
Q Consensus 624 ~~~m~~~~~~~p~~~-~y~~lvd~l~r~g~~~eA~~~i~~~--~~~p~~~-~w~~ll~a~~~~~~~~~a~~~~~~~~~l~ 699 (868)
++...+. .|... .+..+...+...|++++|.+.+++. ...|+.. .+..+..++...|+.+.|+..++++....
T Consensus 395 ~~~Al~l---~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~ 471 (553)
T PRK12370 395 INECLKL---DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE 471 (553)
T ss_pred HHHHHhc---CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc
Confidence 9998874 44422 2223444566789999999999887 2235444 45666666778999999999999999999
Q ss_pred CCCchhHHHHHHHHhhcCCChhHHHHHHHHH
Q 047992 700 PGDVLIQRLILQIYAICGKPEDALKVRKLER 730 (868)
Q Consensus 700 p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 730 (868)
|++......|+..|...| ++|....+.+.
T Consensus 472 ~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll 500 (553)
T PRK12370 472 ITGLIAVNLLYAEYCQNS--ERALPTIREFL 500 (553)
T ss_pred chhHHHHHHHHHHHhccH--HHHHHHHHHHH
Confidence 999999999999999888 47777444443
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.97 E-value=5.1e-06 Score=89.27 Aligned_cols=465 Identities=14% Similarity=0.098 Sum_probs=260.7
Q ss_pred CCCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHcCChHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChhHHHHH
Q 047992 169 NCGDFEAGKLMHSLVIKLGMSCVRRVRNSVLAVYVKCGKLIWARRFFESMDE---KDGVAWNSMISGYFQIGENDEAHRL 245 (868)
Q Consensus 169 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l 245 (868)
..+.+..+....+.+++ +++....+.....-.+...|+-++|......-.. ++.+.|..+.-.+-...++++|++.
T Consensus 19 E~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHH
Confidence 34455566666666665 3332222222222223445666777666554433 3566788777777777888888888
Q ss_pred HHHHHHcCCccChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCc-
Q 047992 246 FDKMCREEIKLGVVTFNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGV- 324 (868)
Q Consensus 246 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~- 324 (868)
|......+ +.|...+.-|--.-++.|+++.....-..+.+..+. ....|.....++.-.|++..|..++++..+...
T Consensus 98 y~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~-~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~ 175 (700)
T KOG1156|consen 98 YRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS-QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNT 175 (700)
T ss_pred HHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 88776543 334555555555556666666666665555554322 455677777777777777777777777654432
Q ss_pred cCCcccHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHcCCCHHHHHHHHHhcCCC--C-eehHHHHH
Q 047992 325 MPNGVTITSAISACTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEELEAAERVFDMIKDK--D-VYSWNSMI 401 (868)
Q Consensus 325 ~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~vf~~~~~~--~-~~~~~~li 401 (868)
.|+...+.....-.- -.....+.|.+++|.+.+...... | ...-.+..
T Consensus 176 ~~s~~~~e~se~~Ly-----------------------------~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka 226 (700)
T KOG1156|consen 176 SPSKEDYEHSELLLY-----------------------------QNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKA 226 (700)
T ss_pred CCCHHHHHHHHHHHH-----------------------------HHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHH
Confidence 344433322211110 011223455566666555544432 1 11223445
Q ss_pred HHHHhcCChhHHHHHHHHhHhCCCCCCeeehhhHHH-HHHhcCCHHHHH-HHHHhcccCCCCCCCeeehhhhHHHHHhcC
Q 047992 402 AGYCQAGYCGKAYELFIKMQESDVPPNVITWNVLIS-GYIQNGNEDEAV-DLFQRMGKNDKVKRNTASWNSLIAGYQQLG 479 (868)
Q Consensus 402 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~-~~~~~g~~~~A~-~~f~~m~~~~~~~~~~~~~~~li~~~~~~g 479 (868)
..+.+.++.++|..++..++.. .||..-|...+. ++.+-.+.-+++ .+|....+.. +.....-..=++......
T Consensus 227 ~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y--~r~e~p~Rlplsvl~~ee 302 (700)
T KOG1156|consen 227 DLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY--PRHECPRRLPLSVLNGEE 302 (700)
T ss_pred HHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC--cccccchhccHHHhCcch
Confidence 5667777888888888877766 366666655443 333344444444 6666665432 111111111122222222
Q ss_pred ChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHh
Q 047992 480 QKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFD 559 (868)
Q Consensus 480 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~ 559 (868)
-.+..-.+++.+.+.|+++-...+.++..- +..+.+.-.|+.+|...=+-..+....+
T Consensus 303 l~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~----------------------p~k~~~le~Lvt~y~~~L~~~~~f~~~D 360 (700)
T KOG1156|consen 303 LKEIVDKYLRPLLSKGVPSVFKDLRSLYKD----------------------PEKVAFLEKLVTSYQHSLSGTGMFNFLD 360 (700)
T ss_pred hHHHHHHHHHHHhhcCCCchhhhhHHHHhc----------------------hhHhHHHHHHHHHHHhhcccccCCCccc
Confidence 334445566677777777654444333211 0011123334444433211111111111
Q ss_pred --cCCCCCceecHH--HHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCChHHHHHHHHHhhhhcCCC
Q 047992 560 --GMSSKDIITWNS--LICGYVLHGFWHAALDLFDQMKSFGLKPNRG-TFLSIILAHSLAGMVDLGKKVFCSITECYQII 634 (868)
Q Consensus 560 --~~~~~d~~~~~~--li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 634 (868)
+..+|....|.. ++..|-..|+++.|+...+..+. -.|..+ -|..-...+.|+|++++|..++....+ -..
T Consensus 361 ~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~e--lD~ 436 (700)
T KOG1156|consen 361 DGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQE--LDT 436 (700)
T ss_pred ccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHh--ccc
Confidence 122455666655 46667788999999999999887 577764 344455678999999999999998776 345
Q ss_pred CChhHHHHHHHhhhhcCChHHHHHHHHhCCCCC-C--------HHHHHHHH--HHHHhcCCHHHHHHHHHHH
Q 047992 635 PMIEHYSAMIDLYGRSGKLEEAMEFIEDMPIEP-D--------SSIWEALL--TACRIHGNIDLAVLAIERL 695 (868)
Q Consensus 635 p~~~~y~~lvd~l~r~g~~~eA~~~i~~~~~~p-~--------~~~w~~ll--~a~~~~~~~~~a~~~~~~~ 695 (868)
||...-+--+.-..|+.+.++|.++.....-+. + ..+|-.+- .++.+.|++.+|.+-+..+
T Consensus 437 aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 437 ADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred hhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 665554455677789999999999987763221 1 23666554 3577888888877655544
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.97 E-value=5.2e-08 Score=105.95 Aligned_cols=230 Identities=17% Similarity=0.151 Sum_probs=166.1
Q ss_pred HHhHHHHHHHHhchhchHHHHHHHHHHHHh-----CC-CCCh-hHHHHHHHHHHhcCCHHHHHHHHhcCCC-------C-
Q 047992 500 CVTILSVLPACAYLVASNKVKEIHGCVLRR-----SL-ESSL-PVMNSLIDTYAKSGNIVYSRTIFDGMSS-------K- 564 (868)
Q Consensus 500 ~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~-----~~-~~~~-~~~~~Li~~y~k~g~~~~A~~~f~~~~~-------~- 564 (868)
..|...+-..|...|.++.|.+.+...++. |. .+.+ ...+.+..+|...+++++|..+|+++.. +
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 344555666677777777777776666553 21 1222 2234578899999999999888887642 2
Q ss_pred ---CceecHHHHHHHHhcCChHHHHHHHHHHHH-----CCCCCCH--HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCC
Q 047992 565 ---DIITWNSLICGYVLHGFWHAALDLFDQMKS-----FGLKPNR--GTFLSIILAHSLAGMVDLGKKVFCSITECYQII 634 (868)
Q Consensus 565 ---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 634 (868)
-..+++.|..+|...|++++|...+++..+ .|..+.. .-+..+...|.+.+.+++|..++....+.+.-.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 234788888899999999988888777643 2333322 344556667999999999999999776655422
Q ss_pred CC------hhHHHHHHHhhhhcCChHHHHHHHHhC-------CC--CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhc-
Q 047992 635 PM------IEHYSAMIDLYGRSGKLEEAMEFIEDM-------PI--EPD-SSIWEALLTACRIHGNIDLAVLAIERLFD- 697 (868)
Q Consensus 635 p~------~~~y~~lvd~l~r~g~~~eA~~~i~~~-------~~--~p~-~~~w~~ll~a~~~~~~~~~a~~~~~~~~~- 697 (868)
|. ..+|+-|..+|...|+++||+++++++ .. .+. ....+.|..+|...++.+.|.+.+++...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 32 347999999999999999999999887 11 222 33667788999999999999999887764
Q ss_pred ---cCCCC---chhHHHHHHHHhhcCCChhHHHHHHHH
Q 047992 698 ---LEPGD---VLIQRLILQIYAICGKPEDALKVRKLE 729 (868)
Q Consensus 698 ---l~p~~---~~~~~~l~~~y~~~g~~~~a~~~~~~m 729 (868)
..|++ ..+|-.|+-+|.+.|++++|.++-...
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 34555 456778889999999999999986554
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=98.96 E-value=5.4e-08 Score=98.53 Aligned_cols=164 Identities=17% Similarity=0.120 Sum_probs=112.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 047992 535 LPVMNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPN-RGTFLSIILA 610 (868)
Q Consensus 535 ~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a 610 (868)
...+..+...|...|++++|.+.|++.. +.+...|..+...+...|++++|++.|++.......|. ...+..+..+
T Consensus 65 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 144 (234)
T TIGR02521 65 YLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLC 144 (234)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHH
Confidence 3445556667777777777777776543 33455667777777788888888888888776432232 2445556667
Q ss_pred hhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHH
Q 047992 611 HSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIE-PDSSIWEALLTACRIHGNIDLA 688 (868)
Q Consensus 611 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~-p~~~~w~~ll~a~~~~~~~~~a 688 (868)
+...|+.++|..+|....+.. +.+...+..+..++...|++++|.+.+++. ... ++...|..+.......|+.+.|
T Consensus 145 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 222 (234)
T TIGR02521 145 ALKAGDFDKAEKYLTRALQID--PQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAA 222 (234)
T ss_pred HHHcCCHHHHHHHHHHHHHhC--cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHH
Confidence 778888888888888776632 223456777788888888888888888876 222 3445666666777788888888
Q ss_pred HHHHHHHhccCC
Q 047992 689 VLAIERLFDLEP 700 (868)
Q Consensus 689 ~~~~~~~~~l~p 700 (868)
....+.+.+..|
T Consensus 223 ~~~~~~~~~~~~ 234 (234)
T TIGR02521 223 QRYGAQLQKLFP 234 (234)
T ss_pred HHHHHHHHhhCc
Confidence 888887766654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.9e-07 Score=97.62 Aligned_cols=174 Identities=14% Similarity=0.050 Sum_probs=119.7
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047992 534 SLPVMNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILA 610 (868)
Q Consensus 534 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 610 (868)
++..++.+...|...|++++|...|++.. +.+...|..+...+...|++++|++.|++..+ ..|+.......+..
T Consensus 97 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~--~~P~~~~~~~~~~l 174 (296)
T PRK11189 97 MADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ--DDPNDPYRALWLYL 174 (296)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 56778888899999999999999998764 34567888888889999999999999999988 56765432222223
Q ss_pred hhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHH--HHHHHHhC-C----CCCC-HHHHHHHHHHHHhc
Q 047992 611 HSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEE--AMEFIEDM-P----IEPD-SSIWEALLTACRIH 682 (868)
Q Consensus 611 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~e--A~~~i~~~-~----~~p~-~~~w~~ll~a~~~~ 682 (868)
+...++.++|...|..... ...|+...+ .++..+ .|++++ +.+.+.+. + ..|+ ...|..|...+...
T Consensus 175 ~~~~~~~~~A~~~l~~~~~--~~~~~~~~~-~~~~~~--lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~ 249 (296)
T PRK11189 175 AESKLDPKQAKENLKQRYE--KLDKEQWGW-NIVEFY--LGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSL 249 (296)
T ss_pred HHccCCHHHHHHHHHHHHh--hCCccccHH-HHHHHH--ccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHC
Confidence 4557789999999976554 223333222 333333 444433 33333321 1 1222 34899999999999
Q ss_pred CCHHHHHHHHHHHhccCC-CCchhHHHHHHHHh
Q 047992 683 GNIDLAVLAIERLFDLEP-GDVLIQRLILQIYA 714 (868)
Q Consensus 683 ~~~~~a~~~~~~~~~l~p-~~~~~~~~l~~~y~ 714 (868)
|+++.|...++++++++| +...+-..+..+..
T Consensus 250 g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~ 282 (296)
T PRK11189 250 GDLDEAAALFKLALANNVYNFVEHRYALLELAL 282 (296)
T ss_pred CCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 999999999999999997 44444444554433
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.3e-07 Score=101.05 Aligned_cols=240 Identities=16% Similarity=0.172 Sum_probs=161.3
Q ss_pred eehhhHHHHHHhcCCHHHHHHHHHhcccC-----CCCCCCee-ehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhH
Q 047992 430 ITWNVLISGYIQNGNEDEAVDLFQRMGKN-----DKVKRNTA-SWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTI 503 (868)
Q Consensus 430 ~t~~~li~~~~~~g~~~~A~~~f~~m~~~-----~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 503 (868)
.+...+..+|...|+++.|..+|+...+. +...|.+. ..+.+...|...+++++|..+|+++..-
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i--------- 270 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTI--------- 270 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH---------
Confidence 34455777778888888887777766432 10112211 1223455666667777777776666421
Q ss_pred HHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC----------CCCce-ecHHH
Q 047992 504 LSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMS----------SKDII-TWNSL 572 (868)
Q Consensus 504 ~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~----------~~d~~-~~~~l 572 (868)
.........+.-..+++.|...|.+.|++++|...+++.. .+++. ..+.+
T Consensus 271 -------------------~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~ 331 (508)
T KOG1840|consen 271 -------------------REEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSEL 331 (508)
T ss_pred -------------------HHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHH
Confidence 0000000011123455667778999999888877776542 12222 46677
Q ss_pred HHHHHhcCChHHHHHHHHHHHHC---CCCCCH----HHHHHHHHHhhccCChHHHHHHHHHhhhhc-----CCCCC-hhH
Q 047992 573 ICGYVLHGFWHAALDLFDQMKSF---GLKPNR----GTFLSIILAHSLAGMVDLGKKVFCSITECY-----QIIPM-IEH 639 (868)
Q Consensus 573 i~~~~~~g~~~~A~~l~~~m~~~---g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-----~~~p~-~~~ 639 (868)
+..|...+++++|..++++..+. -..+++ -++..+...+-+.|.+++|.++|++..+.. +..+. -.+
T Consensus 332 ~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~ 411 (508)
T KOG1840|consen 332 AAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKP 411 (508)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHH
Confidence 78888999999999998877542 133343 467888889999999999999999877643 11222 446
Q ss_pred HHHHHHhhhhcCChHHHHHHHHhC--------CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 047992 640 YSAMIDLYGRSGKLEEAMEFIEDM--------PIEPDSS-IWEALLTACRIHGNIDLAVLAIERLFD 697 (868)
Q Consensus 640 y~~lvd~l~r~g~~~eA~~~i~~~--------~~~p~~~-~w~~ll~a~~~~~~~~~a~~~~~~~~~ 697 (868)
++-|...|.+.++.++|.+++.+. |..|+.. ++..|...|+..||+|.|++..++++.
T Consensus 412 l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 412 LNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 778888899999999888888765 4556655 899999999999999999999999873
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.89 E-value=9.2e-08 Score=89.68 Aligned_cols=159 Identities=18% Similarity=0.141 Sum_probs=116.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCC-hhHHHHHHHhhh
Q 047992 571 SLICGYVLHGFWHAALDLFDQMKSFGLKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPM-IEHYSAMIDLYG 648 (868)
Q Consensus 571 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lvd~l~ 648 (868)
.+..+|.+.|+...|.+.+++.++ ..|+. .++..+...+...|..+.|.+.|+...+ +.|+ -+..+-...-|+
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~FLC 114 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhHHHH
Confidence 344556666666666666666666 45544 5556666666666666666666665554 2332 334555666778
Q ss_pred hcCChHHHHHHHHhC---CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHH
Q 047992 649 RSGKLEEAMEFIEDM---PIEPDS-SIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALK 724 (868)
Q Consensus 649 r~g~~~eA~~~i~~~---~~~p~~-~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~ 724 (868)
..|++++|...|++. |.-|.. .+|..+.....+.|+.+.|+..+++.++++|+++.+...+++.....|++-+|.-
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence 888999999888887 433433 3787877777789999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCC
Q 047992 725 VRKLERENTR 734 (868)
Q Consensus 725 ~~~~m~~~~~ 734 (868)
..+....++.
T Consensus 195 ~~~~~~~~~~ 204 (250)
T COG3063 195 YLERYQQRGG 204 (250)
T ss_pred HHHHHHhccc
Confidence 8887776654
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.8e-05 Score=85.48 Aligned_cols=65 Identities=18% Similarity=0.304 Sum_probs=48.1
Q ss_pred HHHHHHhhhhcCChHHHHH--HHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCch
Q 047992 640 YSAMIDLYGRSGKLEEAME--FIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVL 704 (868)
Q Consensus 640 y~~lvd~l~r~g~~~eA~~--~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~ 704 (868)
-..+..+|.+.|+-.-|.+ ++..+ .+.| ++..|..|....++.|+.+.|...+.-++++++.+|.
T Consensus 721 ~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 721 MTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 3444555555555444444 66555 4555 4569999999999999999999999999999998763
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.86 E-value=2e-05 Score=78.33 Aligned_cols=128 Identities=16% Similarity=0.197 Sum_probs=65.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHH-HHHHhhhh
Q 047992 571 SLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYS-AMIDLYGR 649 (868)
Q Consensus 571 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~-~lvd~l~r 649 (868)
+|.+.+.-.-++++.+-.++....- +.-|.+.-..+..|....|...+|.++|-.+.. -.+ .+-..|. .+..+|.+
T Consensus 364 smAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~~is~-~~i-kn~~~Y~s~LArCyi~ 440 (557)
T KOG3785|consen 364 SMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEAEELFIRISG-PEI-KNKILYKSMLARCYIR 440 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHHHHHHhhhcC-hhh-hhhHHHHHHHHHHHHh
Confidence 3334444444444444444444332 122222223344444555555555555544332 011 1112232 23456667
Q ss_pred cCChHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 047992 650 SGKLEEAMEFIEDMPIEPDSSIW-EALLTACRIHGNIDLAVLAIERLFDLEPG 701 (868)
Q Consensus 650 ~g~~~eA~~~i~~~~~~p~~~~w-~~ll~a~~~~~~~~~a~~~~~~~~~l~p~ 701 (868)
.|+.+-|++++-++..+.+..+. .-..+-|.+.+.+=-|-+++..+-.+||.
T Consensus 441 nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 441 NKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred cCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 77777777777766444444433 33345688888888888888888888874
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.85 E-value=9.9e-06 Score=89.59 Aligned_cols=430 Identities=13% Similarity=0.163 Sum_probs=214.2
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCccChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhc----
Q 047992 231 SGYFQIGENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQN---- 306 (868)
Q Consensus 231 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~---- 306 (868)
..+...|++++|++.+..-. ..+.............+.+.|+.++|..++..+.++++. |..-|..+..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~-~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNE-KQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhh-hhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhcccc
Confidence 34456677777777775532 223334445556667777777777777777777777654 555555555555222
Q ss_pred -CChhHHHHHHHHHHhCCccCCcccHHHHHHHHhchhhH-HHHHHHHHHHHHhCCCCCccHHHHHHHHHHcCCCHHHHHH
Q 047992 307 -GRTSQALDLFKEMSFVGVMPNGVTITSAISACTDLKAL-AMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEELEAAER 384 (868)
Q Consensus 307 -g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~-~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 384 (868)
.+.+...++|+++...- |.......+.-.+.....+ ..+.......++.|++ .+++.|-..|......+-...
T Consensus 90 ~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred cccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHH
Confidence 24566677777775332 4433333222222222222 2344555555666643 355666666665444444444
Q ss_pred HHHhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCeeeh--hhHHHHHHhcCCHHHHHHHHHhcccCCCCC
Q 047992 385 VFDMIKDKDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITW--NVLISGYIQNGNEDEAVDLFQRMGKNDKVK 462 (868)
Q Consensus 385 vf~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~--~~li~~~~~~g~~~~A~~~f~~m~~~~~~~ 462 (868)
++...... ....+.+...- ....-+|+...| .-+...|...|++++|++++++..+.. |
T Consensus 165 l~~~~~~~-----------l~~~~~~~~~~------~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--P 225 (517)
T PF12569_consen 165 LVEEYVNS-----------LESNGSFSNGD------DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--P 225 (517)
T ss_pred HHHHHHHh-----------hcccCCCCCcc------ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--C
Confidence 43332210 00000000000 000012333223 444555667777777777777766553 2
Q ss_pred CCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCC-ChhHHHHH
Q 047992 463 RNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLES-SLPVMNSL 541 (868)
Q Consensus 463 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~L 541 (868)
-.+..|..-...+-+.|++++|.+.++..+. ++. |..+-+-.
T Consensus 226 t~~ely~~KarilKh~G~~~~Aa~~~~~Ar~-------------------------------------LD~~DRyiNsK~ 268 (517)
T PF12569_consen 226 TLVELYMTKARILKHAGDLKEAAEAMDEARE-------------------------------------LDLADRYINSKC 268 (517)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-------------------------------------CChhhHHHHHHH
Confidence 2345566666666777777777776666653 222 55555556
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCCc----------eec--HHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCHH-----
Q 047992 542 IDTYAKSGNIVYSRTIFDGMSSKDI----------ITW--NSLICGYVLHGFWHAALDLFDQMKSF--GLKPNRG----- 602 (868)
Q Consensus 542 i~~y~k~g~~~~A~~~f~~~~~~d~----------~~~--~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~----- 602 (868)
+..+.++|++++|.+++.....++. ..| ..-..+|.+.|++..|++.|....+. .+.-|..
T Consensus 269 aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Y 348 (517)
T PF12569_consen 269 AKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSY 348 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHH
Confidence 6666677777777777666554431 123 22345667777777777665544331 1222222
Q ss_pred --------HHHHHHHHhhccC----C---hHHHHHHHHHhhhhcCCCCChhH-----------HHHHHHhh---hhcCCh
Q 047992 603 --------TFLSIILAHSLAG----M---VDLGKKVFCSITECYQIIPMIEH-----------YSAMIDLY---GRSGKL 653 (868)
Q Consensus 603 --------t~~~ll~a~~~~g----~---~~~a~~~~~~m~~~~~~~p~~~~-----------y~~lvd~l---~r~g~~ 653 (868)
+|..+|.-.-+.. - ...|.+++-.+.+.......... -.-+-.-. .+...-
T Consensus 349 c~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~ 428 (517)
T PF12569_consen 349 CLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKK 428 (517)
T ss_pred HHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCcccccccccccccccCChHHHHHHHHHHHHHHHHHhH
Confidence 2222222111100 0 12223333222221110000000 00000000 001111
Q ss_pred HHHHHHHH--------------hC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCC
Q 047992 654 EEAMEFIE--------------DM-PIEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGK 718 (868)
Q Consensus 654 ~eA~~~i~--------------~~-~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 718 (868)
+++...-. .. |.+.|....+.-|. ....=++.|.+.++-+.+..|++..+|.+--.+|.+.|+
T Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp~GekL~--~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K 506 (517)
T PF12569_consen 429 EEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDDPLGEKLL--KTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGK 506 (517)
T ss_pred HHHHHHHhhhhhhhhccccccccccCCcCCCCccHHHHh--cCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCc
Confidence 12221110 00 22223222222221 233457889999999999999999999999999999999
Q ss_pred ChhHHHH
Q 047992 719 PEDALKV 725 (868)
Q Consensus 719 ~~~a~~~ 725 (868)
+--|.+-
T Consensus 507 ~LLaLqa 513 (517)
T PF12569_consen 507 YLLALQA 513 (517)
T ss_pred HHHHHHH
Confidence 9877664
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.84 E-value=9e-05 Score=79.12 Aligned_cols=107 Identities=17% Similarity=0.131 Sum_probs=57.8
Q ss_pred hCCChhHHHHHHHHhHHCCCCCCcc-hHHHHHHHhhCCCChHHHHHHHHHHHHhCCCC-CcchHHHHHHHHHHcCChHHH
Q 047992 134 RDQRWREVVELFFLMVQDGLFPDDF-LFPKILQACGNCGDFEAGKLMHSLVIKLGMSC-VRRVRNSVLAVYVKCGKLIWA 211 (868)
Q Consensus 134 ~~g~~~~a~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~y~~~g~~~~A 211 (868)
+.+..++|+..+. |..++.. +...=-+.|-+.++++++..++.++.+.+.+. |...-..++..-. .-.+
T Consensus 91 rlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a----~l~~ 161 (652)
T KOG2376|consen 91 RLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA----ALQV 161 (652)
T ss_pred HcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH----hhhH
Confidence 5667777777766 2333332 33333455677777777777777777766432 2222222222111 1112
Q ss_pred HHHHhhcCCCChhhHHHH---HHHHHhcCChhHHHHHHHHHH
Q 047992 212 RRFFESMDEKDGVAWNSM---ISGYFQIGENDEAHRLFDKMC 250 (868)
Q Consensus 212 ~~~f~~~~~~d~~~~~~l---i~~~~~~g~~~~A~~l~~~m~ 250 (868)
. +.+..+.....+|..+ .-.++..|++.+|+++++...
T Consensus 162 ~-~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~ 202 (652)
T KOG2376|consen 162 Q-LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKAL 202 (652)
T ss_pred H-HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 1 3444554444344333 334566889999999888773
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.84 E-value=9.9e-05 Score=83.23 Aligned_cols=646 Identities=13% Similarity=0.085 Sum_probs=308.6
Q ss_pred chHHHHHHHHhCCChhHHHHHHHHHhhcCCCCCcccHHHHHHHHhccCChHHHHHHHHHh-hh-cCCCChhhhhHHHHHH
Q 047992 24 FRDTHLDFLCGNGRLNEAITVLDSIATQGAKVRRNTYINLLQACIDSNSIHLARKLHAFL-NL-VTEIDVFVKTKLLSVY 101 (868)
Q Consensus 24 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~i~~~~-~~-~~~~~~~~~~~li~~~ 101 (868)
.|.+|...|+...+..+|.+.|+.....+. -+..........+++..+.+.|..+.-.. .. ....-..-+-..--.|
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLDa-tdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELDA-TDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 689999999998899999999998876652 24456666778888888999988883333 11 1111111122244467
Q ss_pred HhcCChhHHHHHHhhcCC---CCceeHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHH--hhCCCChHHH
Q 047992 102 AKCGCLDDAREVFEDMRE---RNLYTWSAMIGAYSRDQRWREVVELFFLMVQDGLFPDDFLFPKILQA--CGNCGDFEAG 176 (868)
Q Consensus 102 ~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~--~~~~~~~~~a 176 (868)
.+.++..+|..-|+..-+ .|...|..+..+|.+.|++..|+..|.+... +.|+. +|.....+ -+..|.+.++
T Consensus 573 Lea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~s-~y~~fk~A~~ecd~GkYkea 649 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPLS-KYGRFKEAVMECDNGKYKEA 649 (1238)
T ss_pred cCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcHh-HHHHHHHHHHHHHhhhHHHH
Confidence 788899999999987654 4667899999999999999999999988765 45654 23322222 2456778888
Q ss_pred HHHHHHHHHhCCCCCcchHHHHHHHHHHcCChHHHHHHHhhcCC----CChhhHHH-HHHHHHhcC----ChhHHHHHHH
Q 047992 177 KLMHSLVIKLGMSCVRRVRNSVLAVYVKCGKLIWARRFFESMDE----KDGVAWNS-MISGYFQIG----ENDEAHRLFD 247 (868)
Q Consensus 177 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~----~d~~~~~~-li~~~~~~g----~~~~A~~l~~ 247 (868)
...++.++..- ..-....+.|...+.++-. +.+.+-|..++. +....+.. ++...+... -...|..+|-
T Consensus 650 ld~l~~ii~~~-s~e~~~q~gLaE~~ir~ak-d~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~ 727 (1238)
T KOG1127|consen 650 LDALGLIIYAF-SLERTGQNGLAESVIRDAK-DSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFS 727 (1238)
T ss_pred HHHHHHHHHHH-HHHHHhhhhHHHHHHHHHH-HHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHH
Confidence 88877776542 1112223334443433321 111222222211 01111111 111101000 0122333333
Q ss_pred HHHHcCCccChhhHHHHHHHHHhcCCh---H---HHHHHHHHHHhcCCCCCeeeHHHHHHHHHhc--------CChhHHH
Q 047992 248 KMCREEIKLGVVTFNILIRSYNQLGQC---D---VAMEMVKRMESLGITPDVFTWTCMISGFAQN--------GRTSQAL 313 (868)
Q Consensus 248 ~m~~~g~~p~~~~~~~li~~~~~~g~~---~---~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~--------g~~~~A~ 313 (868)
... .. .|+......|..-.-+.+.. + -+.+.+-. ......+..+|..++..|.+. .+...|+
T Consensus 728 q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~--hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai 803 (1238)
T KOG1127|consen 728 QEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIA--HLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAI 803 (1238)
T ss_pred Hhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhH--HHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHH
Confidence 332 11 22222222222212222222 1 01111100 001112355555555554431 1112344
Q ss_pred HHHHHHHhCCccCCcccHHHHHHHHhchhhHHHHHHHHHHHHHhCC-CCCccHHHHHHHHHHcCCCHHHHHHHHHhcCC-
Q 047992 314 DLFKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLAVKMGF-TDDVLVGNSLINMYSKCEELEAAERVFDMIKD- 391 (868)
Q Consensus 314 ~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~-~~~~~~~~~li~~y~~~g~~~~A~~vf~~~~~- 391 (868)
..+.+..+ ...|..-+-..+...+..|++..+. |..+...-. +....+|..+.-.+.+..+++.|...|.....
T Consensus 804 ~c~KkaV~--L~ann~~~WnaLGVlsg~gnva~aQ--HCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSL 879 (1238)
T KOG1127|consen 804 RCCKKAVS--LCANNEGLWNALGVLSGIGNVACAQ--HCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSL 879 (1238)
T ss_pred HHHHHHHH--HhhccHHHHHHHHHhhccchhhhhh--hhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhc
Confidence 44444332 1122222222233333333332222 222221111 22233444444444555555555555554432
Q ss_pred --CCeehHHHHHHHHHhcCChhHHHHHHHHhH----hCCCCCCeeehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCe
Q 047992 392 --KDVYSWNSMIAGYCQAGYCGKAYELFIKMQ----ESDVPPNVITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNT 465 (868)
Q Consensus 392 --~~~~~~~~li~~~~~~g~~~~A~~l~~~m~----~~g~~p~~~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~ 465 (868)
.|.+.|--+.......|+.-+++.+|..-- ..|--|+..-|-........+|+.++-+...+.+..
T Consensus 880 dP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~s-------- 951 (1238)
T KOG1127|consen 880 DPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISS-------- 951 (1238)
T ss_pred CchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhh--------
Confidence 133344444444444444444444444311 111122222222222222333443333333222211
Q ss_pred eehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHh-CCCCChhHHH----H
Q 047992 466 ASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRR-SLESSLPVMN----S 540 (868)
Q Consensus 466 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~----~ 540 (868)
|--.+++.. .|.+-+.+.|.......-.++..+.+.+....++.- ....+...++ .
T Consensus 952 ------------------As~al~~yf-~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~ 1012 (1238)
T KOG1127|consen 952 ------------------ASLALSYYF-LGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPD 1012 (1238)
T ss_pred ------------------hHHHHHHHH-hcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Confidence 000111111 123334555555555555555555444444333210 0111222233 3
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCC-CCceecHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCH-HHHHHHHHHhhccCCh
Q 047992 541 LIDTYAKSGNIVYSRTIFDGMSS-KDIITWNSLICGYVLHGFWHAALDLFDQMKSF-GLKPNR-GTFLSIILAHSLAGMV 617 (868)
Q Consensus 541 Li~~y~k~g~~~~A~~~f~~~~~-~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~-~t~~~ll~a~~~~g~~ 617 (868)
+...+...|+++.|...+..... -|...-..-+. ....|+++++++.|++...- .-..|. +....++-+....+.-
T Consensus 1013 ~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~l~-lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k 1091 (1238)
T KOG1127|consen 1013 AGRLELSLGEFESAKKASWKEWMEVDEDIRGTDLT-LFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQK 1091 (1238)
T ss_pred hhhhhhhhcchhhHhhhhcccchhHHHHHhhhhHH-HHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccc
Confidence 45566667888877777765542 12211111121 24578899999999999872 122232 2333444555677777
Q ss_pred HHHHHHHHHhhhhcCCCCChhHHHHHH-------HhhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 047992 618 DLGKKVFCSITECYQIIPMIEHYSAMI-------DLYGRSGKLEEAMEFIEDMPIEPDSSIWEALLTACRIHGNIDLAVL 690 (868)
Q Consensus 618 ~~a~~~~~~m~~~~~~~p~~~~y~~lv-------d~l~r~g~~~eA~~~i~~~~~~p~~~~w~~ll~a~~~~~~~~~a~~ 690 (868)
+.|+..+-.... --.|+....-|+. |.-+-.+-++|-.++++.=-+.-++.....+ -+...|+-....+
T Consensus 1092 ~~A~~lLfe~~~--ls~~~~~sll~L~A~~ild~da~~ssaileel~kl~k~e~~~~~~~ll~e~--i~~~~~r~~~vk~ 1167 (1238)
T KOG1127|consen 1092 NDAQFLLFEVKS--LSKVQASSLLPLPAVYILDADAHGSSAILEELEKLLKLEWFCWPPGLLKEL--IYALQGRSVAVKK 1167 (1238)
T ss_pred hHHHHHHHHHHH--hCccchhhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhhHHhccChhHHHHH--HHHHhhhhHHHHH
Confidence 888776655544 2334444433332 2222233333333333221111122221222 2456788899999
Q ss_pred HHHHHhccCCCCchhHHHHHHHHhh
Q 047992 691 AIERLFDLEPGDVLIQRLILQIYAI 715 (868)
Q Consensus 691 ~~~~~~~l~p~~~~~~~~l~~~y~~ 715 (868)
..++.+--.|.|+..|.+|++=|++
T Consensus 1168 ~~qr~~h~~P~~~~~WslL~vrya~ 1192 (1238)
T KOG1127|consen 1168 QIQRAVHSNPGDPALWSLLSVRYAQ 1192 (1238)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHH
Confidence 9999999999999999999976654
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=0.0002 Score=78.82 Aligned_cols=552 Identities=14% Similarity=0.102 Sum_probs=268.6
Q ss_pred ChhhhhHHHH--HHHhcCChhHHHHHHhhcCCCCceeHHHHHHHHHhCCChhHHHHHHHHhHHC-C--------CCCCcc
Q 047992 90 DVFVKTKLLS--VYAKCGCLDDAREVFEDMRERNLYTWSAMIGAYSRDQRWREVVELFFLMVQD-G--------LFPDDF 158 (868)
Q Consensus 90 ~~~~~~~li~--~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-g--------~~p~~~ 158 (868)
|..+..++++ .|...|+++.|.+-.+.+. .-..|..|.+.+.+..+.+-|.-.+-.|... | -.|+ .
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e 801 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-E 801 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-c
Confidence 4445555554 5677888888877766654 3456888888888888887776666555321 1 1122 1
Q ss_pred hHHHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHcCChHHHHHHHhhcCCCC-hhhHHHHHHHHHhcC
Q 047992 159 LFPKILQACGNCGDFEAGKLMHSLVIKLGMSCVRRVRNSVLAVYVKCGKLIWARRFFESMDEKD-GVAWNSMISGYFQIG 237 (868)
Q Consensus 159 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d-~~~~~~li~~~~~~g 237 (868)
+=.-+.-.....|.+++|+.++....+.. .|=..|-..|.+++|.++-+.-..-. ..+|.....-+-..+
T Consensus 802 ~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~ 872 (1416)
T KOG3617|consen 802 DEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARR 872 (1416)
T ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhc
Confidence 21222222345677888888888776643 23455667788888877765432211 124555555555567
Q ss_pred ChhHHHHHHHHHHHcCCccChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHH
Q 047992 238 ENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFK 317 (868)
Q Consensus 238 ~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~ 317 (868)
+.+.|++.|+.-... -..++..|. .++.......+++. |...|.-...-+-..|+.+.|+.+|.
T Consensus 873 Di~~AleyyEK~~~h----afev~rmL~------e~p~~~e~Yv~~~~------d~~L~~WWgqYlES~GemdaAl~~Y~ 936 (1416)
T KOG3617|consen 873 DIEAALEYYEKAGVH----AFEVFRMLK------EYPKQIEQYVRRKR------DESLYSWWGQYLESVGEMDAALSFYS 936 (1416)
T ss_pred cHHHHHHHHHhcCCh----HHHHHHHHH------hChHHHHHHHHhcc------chHHHHHHHHHHhcccchHHHHHHHH
Confidence 777777777653211 000111110 01111111122221 33444444455555677777777777
Q ss_pred HHHhCCccCCcccHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHcCCCHHHHHHHHHhcCCCCeehH
Q 047992 318 EMSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEELEAAERVFDMIKDKDVYSW 397 (868)
Q Consensus 318 ~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~vf~~~~~~~~~~~ 397 (868)
...+ |-++.+..+-.|..++|-+|-.+ ..|....-.|..+|-..|++.+|...|.+.+. +
T Consensus 937 ~A~D---------~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa-----f 996 (1416)
T KOG3617|consen 937 SAKD---------YFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQA-----F 996 (1416)
T ss_pred Hhhh---------hhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH-----H
Confidence 6642 34455555556666666665433 22555666677777777887777777766542 2
Q ss_pred HHHHHHHHhcC---------------ChhHHHHHHHHhHhCCCCCCeeehhhHHHHHHhcCCHHHHHHHHHh--------
Q 047992 398 NSMIAGYCQAG---------------YCGKAYELFIKMQESDVPPNVITWNVLISGYIQNGNEDEAVDLFQR-------- 454 (868)
Q Consensus 398 ~~li~~~~~~g---------------~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~f~~-------- 454 (868)
...|+.+-.++ +.-.|-.+|++.- .-+...+..|-+.|.+.+|+++--+
T Consensus 997 snAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g--------~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~ 1068 (1416)
T KOG3617|consen 997 SNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELG--------GYAHKAVMLYHKAGMIGKALELAFRTQQFSALD 1068 (1416)
T ss_pred HHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcc--------hhhhHHHHHHHhhcchHHHHHHHHhhcccHHHH
Confidence 22222222211 1222233333221 0112233345566666555543211
Q ss_pred -cccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHH--hCC
Q 047992 455 -MGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLR--RSL 531 (868)
Q Consensus 455 -m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~--~~~ 531 (868)
+.++-....|+...+.-.+-++.+.++++|..++...++ |...+..|...+- .-..++-+.+.- .+.
T Consensus 1069 lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~AlqlC~~~nv-~vtee~aE~mTp~Kd~~ 1138 (1416)
T KOG3617|consen 1069 LIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQLCKNRNV-RVTEEFAELMTPTKDDM 1138 (1416)
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHHhcCCC-chhHHHHHhcCcCcCCC
Confidence 111111223444555555566667777777766655432 3334444433221 111111111110 011
Q ss_pred CC---ChhHHHHHHHHHHhcCCHHHHHHHHhcCCCC-----------C--cee----------cHHHHHHHHhcCChHHH
Q 047992 532 ES---SLPVMNSLIDTYAKSGNIVYSRTIFDGMSSK-----------D--IIT----------WNSLICGYVLHGFWHAA 585 (868)
Q Consensus 532 ~~---~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~-----------d--~~~----------~~~li~~~~~~g~~~~A 585 (868)
.+ ...+...+.+.+.+.|++..|-+-|.+.-.+ | -+. ...|..-|.+.=++..-
T Consensus 1139 ~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdKl~AMraLLKSGdt~KI~FFAn~sRqkEiYImAANyLQtlDWq~~ 1218 (1416)
T KOG3617|consen 1139 PNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDKLSAMRALLKSGDTQKIRFFANTSRQKEIYIMAANYLQTLDWQDN 1218 (1416)
T ss_pred ccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhHHHHHHHHHhcCCcceEEEEeeccccceeeeehhhhhhhcccccC
Confidence 11 1234555666666777766666666543321 0 000 01122233333222221
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhCCC
Q 047992 586 LDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPI 665 (868)
Q Consensus 586 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~~~ 665 (868)
-++. .|.+||..-..|+-+.+. +|....+ -.+++|..+-.. .|-++||.+-+.++..
T Consensus 1219 pq~m---------K~I~tFYTKgqafd~Lan------FY~~cAq-----iEiee~q~ydKa---~gAl~eA~kCl~ka~~ 1275 (1416)
T KOG3617|consen 1219 PQTM---------KDIETFYTKGQAFDHLAN------FYKSCAQ-----IEIEELQTYDKA---MGALEEAAKCLLKAEQ 1275 (1416)
T ss_pred hHHH---------hhhHhhhhcchhHHHHHH------HHHHHHH-----hhHHHHhhhhHH---hHHHHHHHHHHHHHHh
Confidence 1111 122333333333322222 2221111 122333332222 2456677666666543
Q ss_pred CCCHH-HHH----------HHHHHHHhcC-CHHHHHHHHHHHhccCCCC------chhHHHHHHHHhhcCCChhHHHHHH
Q 047992 666 EPDSS-IWE----------ALLTACRIHG-NIDLAVLAIERLFDLEPGD------VLIQRLILQIYAICGKPEDALKVRK 727 (868)
Q Consensus 666 ~p~~~-~w~----------~ll~a~~~~~-~~~~a~~~~~~~~~l~p~~------~~~~~~l~~~y~~~g~~~~a~~~~~ 727 (868)
+.+.. .++ ..|...+..+ |...+.+-.+-+++ +|.. ...|-+|..-|....+|..|-+..+
T Consensus 1276 k~~~~t~l~~Lq~~~a~vk~~l~~~q~~~eD~~~~i~qc~~lle-ep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~ 1354 (1416)
T KOG3617|consen 1276 KNMSTTGLDALQEDLAKVKVQLRKLQIMKEDAADGIRQCTTLLE-EPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALT 1354 (1416)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh-CcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHH
Confidence 32222 222 2233333322 44555555555544 3433 3567788899999999999999988
Q ss_pred HHHh
Q 047992 728 LERE 731 (868)
Q Consensus 728 ~m~~ 731 (868)
.|+.
T Consensus 1355 el~~ 1358 (1416)
T KOG3617|consen 1355 ELQK 1358 (1416)
T ss_pred HHhh
Confidence 8863
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.70 E-value=5.4e-05 Score=81.61 Aligned_cols=244 Identities=13% Similarity=0.169 Sum_probs=153.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCccChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHH
Q 047992 225 AWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFA 304 (868)
Q Consensus 225 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 304 (868)
.|..++..| ..+++...+++.+.+... ..--..|.....-.+...|+.++|......-....+. +.+.|..+.-.+-
T Consensus 10 lF~~~lk~y-E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R 86 (700)
T KOG1156|consen 10 LFRRALKCY-ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQR 86 (700)
T ss_pred HHHHHHHHH-HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHh
Confidence 344444444 345677777777776652 2222233333334456678888888888877765555 7888988888888
Q ss_pred hcCChhHHHHHHHHHHhCCccCCcccHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHcCCCHHHHHH
Q 047992 305 QNGRTSQALDLFKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEELEAAER 384 (868)
Q Consensus 305 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 384 (868)
...++++|+..|+.... +.||.... +.-|.-.-++.++++....
T Consensus 87 ~dK~Y~eaiKcy~nAl~--~~~dN~qi----------------------------------lrDlslLQ~QmRd~~~~~~ 130 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALK--IEKDNLQI----------------------------------LRDLSLLQIQMRDYEGYLE 130 (700)
T ss_pred hhhhHHHHHHHHHHHHh--cCCCcHHH----------------------------------HHHHHHHHHHHHhhhhHHH
Confidence 88889999999988854 33443221 1111111222233332222
Q ss_pred HHHhc---CCCCeehHHHHHHHHHhcCChhHHHHHHHHhHhCC-CCCCeeehhhHH------HHHHhcCCHHHHHHHHHh
Q 047992 385 VFDMI---KDKDVYSWNSMIAGYCQAGYCGKAYELFIKMQESD-VPPNVITWNVLI------SGYIQNGNEDEAVDLFQR 454 (868)
Q Consensus 385 vf~~~---~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~li------~~~~~~g~~~~A~~~f~~ 454 (868)
.-... .......|..++.++.-.|+...|..++++..+.. -.|+...+.-.. ....+.|..++|.+.+..
T Consensus 131 tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~ 210 (700)
T KOG1156|consen 131 TRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLD 210 (700)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHh
Confidence 22222 22355678888888999999999999998888665 245655553332 234567888888888776
Q ss_pred cccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHh
Q 047992 455 MGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACA 511 (868)
Q Consensus 455 m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 511 (868)
.... +......-.+....+.+.++.++|..+++.++. ..||..-|.-.+..|.
T Consensus 211 ~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~--rnPdn~~Yy~~l~~~l 263 (700)
T KOG1156|consen 211 NEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLE--RNPDNLDYYEGLEKAL 263 (700)
T ss_pred hhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHh--hCchhHHHHHHHHHHH
Confidence 6432 122222334556778899999999999999885 4688777776666554
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.66 E-value=8.7e-05 Score=75.58 Aligned_cols=290 Identities=11% Similarity=0.048 Sum_probs=193.2
Q ss_pred hhHHHHHHh--cCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHH-
Q 047992 433 NVLISGYIQ--NGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPA- 509 (868)
Q Consensus 433 ~~li~~~~~--~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a- 509 (868)
..-+.+|++ .++...|...|-.+.....++.|+.....+...+...|+.++|...|++.+. +.|+.++-.-+-..
T Consensus 198 s~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~--~dpy~i~~MD~Ya~L 275 (564)
T KOG1174|consen 198 SKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLC--ANPDNVEAMDLYAVL 275 (564)
T ss_pred HHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhh--CChhhhhhHHHHHHH
Confidence 334555544 4566667777776666666788888999999999999999999999998763 45654432211111
Q ss_pred HhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHH
Q 047992 510 CAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAAL 586 (868)
Q Consensus 510 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~ 586 (868)
...-|+++....+..++....- ....-|-.-........+.+.|...-++.. ++++..+-.-...+.+.|+.++|+
T Consensus 276 L~~eg~~e~~~~L~~~Lf~~~~-~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~ 354 (564)
T KOG1174|consen 276 LGQEGGCEQDSALMDYLFAKVK-YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAV 354 (564)
T ss_pred HHhccCHhhHHHHHHHHHhhhh-cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHH
Confidence 1344566666665555544210 111111111112223456667776666544 344444544456677889999999
Q ss_pred HHHHHHHHCCCCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHH-Hhhh-hcCChHHHHHHHHhC
Q 047992 587 DLFDQMKSFGLKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMI-DLYG-RSGKLEEAMEFIEDM 663 (868)
Q Consensus 587 ~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv-d~l~-r~g~~~eA~~~i~~~ 663 (868)
-.|+..+. +.|-. ..|-+++..|...|...||.-.-+...+..+ .+..+.+.+. +.+. ..---|+|.+++++.
T Consensus 355 IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~--~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~ 430 (564)
T KOG1174|consen 355 IAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQ--NSARSLTLFGTLVLFPDPRMREKAKKFAEKS 430 (564)
T ss_pred HHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhh--cchhhhhhhcceeeccCchhHHHHHHHHHhh
Confidence 99998887 77754 7899999999999999998877665544322 2333333331 2222 222347899999887
Q ss_pred -CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHH
Q 047992 664 -PIEPDSS-IWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLER 730 (868)
Q Consensus 664 -~~~p~~~-~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 730 (868)
.++|+-. .-..+...|...|..+.+....++.+...|++ ..++.|+.+.++...+.+|...+....
T Consensus 431 L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~AL 498 (564)
T KOG1174|consen 431 LKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKAL 498 (564)
T ss_pred hccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 7788755 55667778889999999999999999999864 678899999999999999988776543
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1e-05 Score=80.10 Aligned_cols=306 Identities=12% Similarity=0.110 Sum_probs=197.4
Q ss_pred HHHHHHcCCCHHHHHHHHHhcCCCCeehHHHHH---HHHHhcCChhHHHHHHHHhHhCCCCCCeeehh-hHHHHHHhcCC
Q 047992 369 LINMYSKCEELEAAERVFDMIKDKDVYSWNSMI---AGYCQAGYCGKAYELFIKMQESDVPPNVITWN-VLISGYIQNGN 444 (868)
Q Consensus 369 li~~y~~~g~~~~A~~vf~~~~~~~~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~-~li~~~~~~g~ 444 (868)
|...+...|++.+|..-|....+-|+..|.++. ..|...|+..-|+.-|...++. +||-..-. .-...+.+.|.
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~Ge 121 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQGE 121 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhccc
Confidence 444555678889999999988888888777764 4788899999999888888866 56633221 11234678999
Q ss_pred HHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHH
Q 047992 445 EDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHG 524 (868)
Q Consensus 445 ~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~ 524 (868)
++.|..=|+.+.+.. |+.. ....++.+.- +.+++. .....+......|+...+.+...
T Consensus 122 le~A~~DF~~vl~~~---~s~~---~~~eaqskl~-------~~~e~~---------~l~~ql~s~~~~GD~~~ai~~i~ 179 (504)
T KOG0624|consen 122 LEQAEADFDQVLQHE---PSNG---LVLEAQSKLA-------LIQEHW---------VLVQQLKSASGSGDCQNAIEMIT 179 (504)
T ss_pred HHHHHHHHHHHHhcC---CCcc---hhHHHHHHHH-------hHHHHH---------HHHHHHHHHhcCCchhhHHHHHH
Confidence 999999999987654 2211 1111111111 111111 12333444556788888888888
Q ss_pred HHHHhCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHhc---CCCCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 047992 525 CVLRRSLES-SLPVMNSLIDTYAKSGNIVYSRTIFDG---MSSKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPN 600 (868)
Q Consensus 525 ~~~~~~~~~-~~~~~~~Li~~y~k~g~~~~A~~~f~~---~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 600 (868)
.+++ +.| |..++..-.++|.+.|++..|..-+.. +...+.....-+-..+..-|+.+.++...++-++ +.||
T Consensus 180 ~llE--i~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpd 255 (504)
T KOG0624|consen 180 HLLE--IQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPD 255 (504)
T ss_pred HHHh--cCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcc
Confidence 8888 555 899999999999999999999876664 4456777777788888899999999999999888 8899
Q ss_pred HHH-HHHH--H----------HHhhccCChHHHHHHHHHhhhhcCCCCC-----hhHHHHHHHhhhhcCChHHHHHHHHh
Q 047992 601 RGT-FLSI--I----------LAHSLAGMVDLGKKVFCSITECYQIIPM-----IEHYSAMIDLYGRSGKLEEAMEFIED 662 (868)
Q Consensus 601 ~~t-~~~l--l----------~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~y~~lvd~l~r~g~~~eA~~~i~~ 662 (868)
+-. |... | ......+.+.+++.-.+...+ ..|. ...+..+-.++...|++-||+....+
T Consensus 256 HK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk---~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~e 332 (504)
T KOG0624|consen 256 HKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLK---NEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKE 332 (504)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh---cCCcccceeeeeeheeeecccccCCHHHHHHHHHH
Confidence 843 2211 1 012223344444443333322 2232 11223333455566777777766666
Q ss_pred C-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchh
Q 047992 663 M-PIEPDS-SIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLI 705 (868)
Q Consensus 663 ~-~~~p~~-~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~ 705 (868)
. .+.||. .++.--..|+.....++.|..-++++.+++|+|..+
T Consensus 333 vL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 333 VLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRA 377 (504)
T ss_pred HHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHH
Confidence 5 555553 366666666666677777777777777777766544
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.64 E-value=8e-07 Score=91.47 Aligned_cols=159 Identities=13% Similarity=0.091 Sum_probs=98.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCCCCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccC
Q 047992 536 PVMNSLIDTYAKSGNIVYSRTIFDGMSSKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAG 615 (868)
Q Consensus 536 ~~~~~Li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 615 (868)
.+......+|...|++++|.+++.+. .+.......+..|...++.+.|.+.++.|.+ ...|. +...+..|+
T Consensus 103 ~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD~-~l~qLa~aw---- 173 (290)
T PF04733_consen 103 IVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDEDS-ILTQLAEAW---- 173 (290)
T ss_dssp HHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCCH-HHHHHHHHH----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcH-HHHHHHHHH----
Confidence 33344456677888899888888765 4555556677788888888888888888887 44443 333333322
Q ss_pred ChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047992 616 MVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM--PIEPDSSIWEALLTACRIHGNIDLAVLAIE 693 (868)
Q Consensus 616 ~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~--~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~ 693 (868)
|.+..-...+.+|..+|+++ .+.+++.+.+.+..+....|+++.|+..++
T Consensus 174 ----------------------------v~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~ 225 (290)
T PF04733_consen 174 ----------------------------VNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLE 225 (290)
T ss_dssp ----------------------------HHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHH
T ss_pred ----------------------------HHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 22222223455555555555 334555566666666667777777777777
Q ss_pred HHhccCCCCchhHHHHHHHHhhcCCC-hhHHHHHHHHHh
Q 047992 694 RLFDLEPGDVLIQRLILQIYAICGKP-EDALKVRKLERE 731 (868)
Q Consensus 694 ~~~~l~p~~~~~~~~l~~~y~~~g~~-~~a~~~~~~m~~ 731 (868)
++++.+|+++.+...+.-+..-.|+. +.+.+....++.
T Consensus 226 ~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 226 EALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 77777777777777777777777777 445556665553
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=5.6e-07 Score=88.20 Aligned_cols=123 Identities=14% Similarity=0.085 Sum_probs=61.1
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhcCC--CCeehHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCeeeh-hhHHHHHHhcC
Q 047992 367 NSLINMYSKCEELEAAERVFDMIKD--KDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITW-NVLISGYIQNG 443 (868)
Q Consensus 367 ~~li~~y~~~g~~~~A~~vf~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~li~~~~~~g 443 (868)
+.+...|.+.|-+.+|.+.|+...+ +-+.+|-.+...|.+-.++..|+.+|.+-.+. .|-.+|| ..+...+-..+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHH
Confidence 4455566666666666666655432 34445555555555555555555555554433 2333333 22334444455
Q ss_pred CHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhc
Q 047992 444 NEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQS 493 (868)
Q Consensus 444 ~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 493 (868)
+.++|.++++...+.. +.++.+...+..+|.-.+++|-|+..++++.+
T Consensus 305 ~~~~a~~lYk~vlk~~--~~nvEaiAcia~~yfY~~~PE~AlryYRRiLq 352 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH--PINVEAIACIAVGYFYDNNPEMALRYYRRILQ 352 (478)
T ss_pred hHHHHHHHHHHHHhcC--CccceeeeeeeeccccCCChHHHHHHHHHHHH
Confidence 5555555555554433 33444444444455555555555555554443
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.61 E-value=6.9e-05 Score=79.30 Aligned_cols=175 Identities=13% Similarity=0.019 Sum_probs=119.5
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCChHH
Q 047992 541 LIDTYAKSGNIVYSRTIFDGMSSKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR-GTFLSIILAHSLAGMVDL 619 (868)
Q Consensus 541 Li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~ 619 (868)
+...|.+.|+.+.|...|.+...+... -....+....++++...+...- +.|+. .-.-.-.+.+.+.|++.+
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~ 376 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPE 376 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHH
Confidence 455788889999999999875422111 1112233345666666555554 55554 222333567788999999
Q ss_pred HHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 047992 620 GKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPDSS-IWEALLTACRIHGNIDLAVLAIERLFD 697 (868)
Q Consensus 620 a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~~~-~w~~ll~a~~~~~~~~~a~~~~~~~~~ 697 (868)
|...|..+++. .+-+...|+--.-+|.+.|.+.+|.+-.+.. ...|+.. .|.--+.+.+..++++.|..++++.++
T Consensus 377 Av~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 377 AVKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999998873 2334557888888899999999888877665 4556554 554455666778999999999999999
Q ss_pred cCCCCchhHHHHHHHHhhcCCChhHHH
Q 047992 698 LEPGDVLIQRLILQIYAICGKPEDALK 724 (868)
Q Consensus 698 l~p~~~~~~~~l~~~y~~~g~~~~a~~ 724 (868)
++|++..+-..+...+.....-+...+
T Consensus 455 ~dp~~~e~~~~~~rc~~a~~~~~~~ee 481 (539)
T KOG0548|consen 455 LDPSNAEAIDGYRRCVEAQRGDETPEE 481 (539)
T ss_pred cCchhHHHHHHHHHHHHHhhcCCCHHH
Confidence 999998888888777776433333333
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.9e-05 Score=74.52 Aligned_cols=192 Identities=13% Similarity=-0.011 Sum_probs=137.1
Q ss_pred HhchhchHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHhcC---CCCCceecHHHHHHHHhcCChHHH
Q 047992 510 CAYLVASNKVKEIHGCVLRRSLES-SLPVMNSLIDTYAKSGNIVYSRTIFDGM---SSKDIITWNSLICGYVLHGFWHAA 585 (868)
Q Consensus 510 ~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~Li~~y~k~g~~~~A~~~f~~~---~~~d~~~~~~li~~~~~~g~~~~A 585 (868)
+...|+...|+.-++.+++ .+| +.-++..+...|.+.|..+.|.+.|++. .+++-...|....-++..|++++|
T Consensus 45 YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA 122 (250)
T COG3063 45 YLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEA 122 (250)
T ss_pred HHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHH
Confidence 3344444444444444444 444 4556777888888899999998888864 356667778888888888899999
Q ss_pred HHHHHHHHHCCCCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-
Q 047992 586 LDLFDQMKSFGLKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM- 663 (868)
Q Consensus 586 ~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~- 663 (868)
...|++....-.-|.. .||..+.-+-.+.|+.+.|..+|+...+.- .-.......|.+.....|++-+|..+++..
T Consensus 123 ~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d--p~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~ 200 (250)
T COG3063 123 MQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD--PQFPPALLELARLHYKAGDYAPARLYLERYQ 200 (250)
T ss_pred HHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC--cCCChHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 9999988875444433 677777777778899999999998877622 222345677888888899999999988877
Q ss_pred -CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchh
Q 047992 664 -PIEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLI 705 (868)
Q Consensus 664 -~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~ 705 (868)
...++.....-.+..-+..||.+.+-+.-.++-.+-|.....
T Consensus 201 ~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 201 QRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred hcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 344666554444555677888888888888888888876543
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.56 E-value=5.5e-07 Score=95.45 Aligned_cols=224 Identities=18% Similarity=0.216 Sum_probs=156.7
Q ss_pred HHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHH
Q 047992 439 YIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNK 518 (868)
Q Consensus 439 ~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 518 (868)
+.+.|++.+|.-.|+...+.. |.+...|..|......+++-..|+..+++..+ +.|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd--P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~--LdP~------------------- 351 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD--PQHAEAWQKLGITQAENENEQNAISALRRCLE--LDPT------------------- 351 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC--hHHHHHHHHhhhHhhhccchHHHHHHHHHHHh--cCCc-------------------
Confidence 467888888888888887765 66777888888777777777777777776653 2232
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC-ceecHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 047992 519 VKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMSSKD-IITWNSLICGYVLHGFWHAALDLFDQMKSFGL 597 (868)
Q Consensus 519 ~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~d-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 597 (868)
|..+..+|.-.|...|.-.+|.+.++.-.... ...|.... ...+++.
T Consensus 352 ---------------NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a---~~~~~~~-------------- 399 (579)
T KOG1125|consen 352 ---------------NLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSA---GENEDFE-------------- 399 (579)
T ss_pred ---------------cHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhcccc---Ccccccc--------------
Confidence 34445555555555555555555555431100 00010000 0000000
Q ss_pred CCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCCHH-HHHHH
Q 047992 598 KPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPDSS-IWEAL 675 (868)
Q Consensus 598 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~~~-~w~~l 675 (868)
. | ....+......-.++|-.+....+..++.+.+.+|.=+|.-.|.++.|.+-|+.+ ..+|+.. +|+-|
T Consensus 400 ~----~-----~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRL 470 (579)
T KOG1125|consen 400 N----T-----KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRL 470 (579)
T ss_pred C----C-----cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHh
Confidence 0 0 1111222334556677777777786778888999999999999999999999988 6777654 99999
Q ss_pred HHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHH
Q 047992 676 LTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVR 726 (868)
Q Consensus 676 l~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 726 (868)
......-...++|..+|.++++|.|.-..+...|+-.|...|.++||.+..
T Consensus 471 GAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hl 521 (579)
T KOG1125|consen 471 GATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHL 521 (579)
T ss_pred hHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHH
Confidence 998888889999999999999999999999999999999999999999953
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.7e-06 Score=79.46 Aligned_cols=123 Identities=12% Similarity=0.036 Sum_probs=97.5
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-C
Q 047992 586 LDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-P 664 (868)
Q Consensus 586 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~ 664 (868)
..+|++.++ +.|+. +.....++...|++++|..+|+..... -+.+...|..+..++.+.|++++|...+++. .
T Consensus 13 ~~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 13 EDILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVMA--QPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 356667666 66765 445666778889999999988887752 2335667788888999999999999999988 4
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHh
Q 047992 665 IEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYA 714 (868)
Q Consensus 665 ~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 714 (868)
..| ++..|..+..++...|+.+.|...+++++++.|+++.++..++++..
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 445 45588888888889999999999999999999999999988887654
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=0.0013 Score=81.36 Aligned_cols=362 Identities=10% Similarity=-0.052 Sum_probs=208.2
Q ss_pred HHHHHcCCCHHHHHHHHHhcCCCCeeh--HHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCeeehhhHHHHHHhcCCHHH
Q 047992 370 INMYSKCEELEAAERVFDMIKDKDVYS--WNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNVLISGYIQNGNEDE 447 (868)
Q Consensus 370 i~~y~~~g~~~~A~~vf~~~~~~~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 447 (868)
...|...|++.+|..........+... ...........|+++.+...+..+.......+..........+...|++++
T Consensus 348 a~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~ 427 (903)
T PRK04841 348 AEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSE 427 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHH
Confidence 334555666666666555554432111 111122344567777777776665322111122223334445567788888
Q ss_pred HHHHHHhcccCCCC-----CCCe--eehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCH----HhHHHHHHHHhchhch
Q 047992 448 AVDLFQRMGKNDKV-----KRNT--ASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNC----VTILSVLPACAYLVAS 516 (868)
Q Consensus 448 A~~~f~~m~~~~~~-----~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~~~~ 516 (868)
|..++......... .+.. .....+...+...|++++|...+++....--..+. .....+-..+...|++
T Consensus 428 a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~ 507 (903)
T PRK04841 428 VNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGEL 507 (903)
T ss_pred HHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCH
Confidence 88888766432100 0111 11122234456788888888888876542111121 1222233344567888
Q ss_pred HHHHHHHHHHHHhCCC---C--ChhHHHHHHHHHHhcCCHHHHHHHHhcCCC-------CC----ceecHHHHHHHHhcC
Q 047992 517 NKVKEIHGCVLRRSLE---S--SLPVMNSLIDTYAKSGNIVYSRTIFDGMSS-------KD----IITWNSLICGYVLHG 580 (868)
Q Consensus 517 ~~~~~i~~~~~~~~~~---~--~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~-------~d----~~~~~~li~~~~~~g 580 (868)
+.+...+.......-. + .......+...+...|+++.|...+++... ++ ...+..+...+...|
T Consensus 508 ~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G 587 (903)
T PRK04841 508 ARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWA 587 (903)
T ss_pred HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhc
Confidence 8888877776542111 1 123445667788889999999888775431 11 112334455566779
Q ss_pred ChHHHHHHHHHHHHC--CCCCCH--HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHH-----HHHHHhhhhcC
Q 047992 581 FWHAALDLFDQMKSF--GLKPNR--GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHY-----SAMIDLYGRSG 651 (868)
Q Consensus 581 ~~~~A~~l~~~m~~~--g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y-----~~lvd~l~r~g 651 (868)
++++|...+++.... ...|.. ..+..+.......|+.++|...+...............+ ......+...|
T Consensus 588 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 667 (903)
T PRK04841 588 RLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTG 667 (903)
T ss_pred CHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCC
Confidence 999999998887652 112222 233334456678899999999888875532211111111 11123445688
Q ss_pred ChHHHHHHHHhCCC--CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHhccCC------CCchhHHHHHHHHhhcCCC
Q 047992 652 KLEEAMEFIEDMPI--EPDS----SIWEALLTACRIHGNIDLAVLAIERLFDLEP------GDVLIQRLILQIYAICGKP 719 (868)
Q Consensus 652 ~~~eA~~~i~~~~~--~p~~----~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p------~~~~~~~~l~~~y~~~g~~ 719 (868)
..++|.+++..... .... ..+..+..++...|+.+.|...++++++... .....+..++..|...|+.
T Consensus 668 ~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~ 747 (903)
T PRK04841 668 DKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRK 747 (903)
T ss_pred CHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCH
Confidence 99999999877621 1111 1234555667778999999999999887532 2334678889999999999
Q ss_pred hhHHHHHHHHHh
Q 047992 720 EDALKVRKLERE 731 (868)
Q Consensus 720 ~~a~~~~~~m~~ 731 (868)
++|........+
T Consensus 748 ~~A~~~L~~Al~ 759 (903)
T PRK04841 748 SEAQRVLLEALK 759 (903)
T ss_pred HHHHHHHHHHHH
Confidence 999886555544
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.7e-05 Score=74.75 Aligned_cols=403 Identities=13% Similarity=0.033 Sum_probs=213.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcccHHHHHHHHhc
Q 047992 261 FNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISACTD 340 (868)
Q Consensus 261 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~ 340 (868)
+++.+..+.+..++++|++++..-.++.++ +....+.+..+|....++..|.+.|+++.. ..|...-|...
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q--l~P~~~qYrlY------ 83 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQ--LHPELEQYRLY------ 83 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hChHHHHHHHH------
Confidence 455555556666677777776666655433 556667777777777777777777777742 22332222110
Q ss_pred hhhHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHcCCCHHHHHHHHHhcCCCC-eehHHHHH--HHHHhcCChhHHHHHH
Q 047992 341 LKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEELEAAERVFDMIKDKD-VYSWNSMI--AGYCQAGYCGKAYELF 417 (868)
Q Consensus 341 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~vf~~~~~~~-~~~~~~li--~~~~~~g~~~~A~~l~ 417 (868)
-...+-+.+.+.+|.++...|.+.+ ...-..-+ ...-+.+++..+..+.
T Consensus 84 ----------------------------~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLv 135 (459)
T KOG4340|consen 84 ----------------------------QAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLV 135 (459)
T ss_pred ----------------------------HHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHH
Confidence 0111223445555666665555421 11111111 1122346666667777
Q ss_pred HHhHhCCCCCCeeehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCC
Q 047992 418 IKMQESDVPPNVITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFY 497 (868)
Q Consensus 418 ~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 497 (868)
++....| +..+.+...-...+.|++++|.+-|+...+-++..|- ..|+. .-+..+.|+.+.|+++..++.+.|++
T Consensus 136 eQlp~en---~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpl-lAYni-ALaHy~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 136 EQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPL-LAYNL-ALAHYSSRQYASALKHISEIIERGIR 210 (459)
T ss_pred HhccCCC---ccchhccchheeeccccHHHHHHHHHHHHhhcCCCch-hHHHH-HHHHHhhhhHHHHHHHHHHHHHhhhh
Confidence 7666443 4444444444556788888888888887776655443 33443 33455677888888888888777764
Q ss_pred CCHHh-HHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCC-----CceecHH
Q 047992 498 PNCVT-ILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMSSK-----DIITWNS 571 (868)
Q Consensus 498 p~~~t-~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~-----d~~~~~~ 571 (868)
..+.- ....... .....+.....+|.-.+ +..+|.-.-.+.+.|+.+.|++.+-.|+++ |+++.-.
T Consensus 211 ~HPElgIGm~teg-iDvrsvgNt~~lh~Sal-------~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN 282 (459)
T KOG4340|consen 211 QHPELGIGMTTEG-IDVRSVGNTLVLHQSAL-------VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHN 282 (459)
T ss_pred cCCccCccceecc-CchhcccchHHHHHHHH-------HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhH
Confidence 32110 0000000 00000001111111110 112233344567899999999999999975 6677655
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhh-h
Q 047992 572 LICGYVLHGFWHAALDLFDQMKSFGLKPN-RGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYG-R 649 (868)
Q Consensus 572 li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~-r 649 (868)
|.-. -..|++.+..+-+.-+++ +.|- ..||..+|-.|++...++-|-.++-.-....---.+...|. ++|.+. -
T Consensus 283 ~Al~-n~~~~p~~g~~KLqFLL~--~nPfP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~ 358 (459)
T KOG4340|consen 283 QALM-NMDARPTEGFEKLQFLLQ--QNPFPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITC 358 (459)
T ss_pred HHHh-cccCCccccHHHHHHHHh--cCCCChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhC
Confidence 5322 234566666666666666 4553 37999999999999888888777653211000001111222 233333 2
Q ss_pred cCChHHHHHHHHhCCCCCCHHHHHHHHHHH---------HhcCCHH----HHHHHHHHHhccCCCCchhHHHHHHHHhhc
Q 047992 650 SGKLEEAMEFIEDMPIEPDSSIWEALLTAC---------RIHGNID----LAVLAIERLFDLEPGDVLIQRLILQIYAIC 716 (868)
Q Consensus 650 ~g~~~eA~~~i~~~~~~p~~~~w~~ll~a~---------~~~~~~~----~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 716 (868)
.-..++|++-++... ..+++-. .++.+-+ .+..-++..+|+. -......+++|...
T Consensus 359 qT~pEea~KKL~~La--------~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~ 427 (459)
T KOG4340|consen 359 QTAPEEAFKKLDGLA--------GMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNL 427 (459)
T ss_pred CCCHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccc
Confidence 335556655554431 1111111 1222222 2333344445443 23345568899999
Q ss_pred CCChhHHHHHHH
Q 047992 717 GKPEDALKVRKL 728 (868)
Q Consensus 717 g~~~~a~~~~~~ 728 (868)
.++.-|+++.+.
T Consensus 428 ~Dy~~vEk~Fr~ 439 (459)
T KOG4340|consen 428 EDYPMVEKIFRK 439 (459)
T ss_pred cccHHHHHHHHH
Confidence 999988887653
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.53 E-value=0.00071 Score=74.75 Aligned_cols=396 Identities=13% Similarity=0.127 Sum_probs=187.4
Q ss_pred HHHhCCChhHHHHHHHHHhhcCCCCCcccHHHHHHHHhccCChHHHHHHHHHh--hhcC-------CCChhhhhHHHHHH
Q 047992 31 FLCGNGRLNEAITVLDSIATQGAKVRRNTYINLLQACIDSNSIHLARKLHAFL--NLVT-------EIDVFVKTKLLSVY 101 (868)
Q Consensus 31 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~i~~~~--~~~~-------~~~~~~~~~li~~~ 101 (868)
.|.-.|+.+.|++..+.+. +...|..+.+.|.+.++++.|+--..++ ..|. +.+...-....-.-
T Consensus 737 fyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLA 810 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLA 810 (1416)
T ss_pred EEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHH
Confidence 4555667777666655554 2345666666666666666655544443 1111 11112222222223
Q ss_pred HhcCChhHHHHHHhhcCCCCceeHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHhhCCCChHHHHHHHH
Q 047992 102 AKCGCLDDAREVFEDMRERNLYTWSAMIGAYSRDQRWREVVELFFLMVQDGLFPDDFLFPKILQACGNCGDFEAGKLMHS 181 (868)
Q Consensus 102 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 181 (868)
...|.+++|..++.+-.+-| .|=.-|-..|.+.+|+++-+.-.+-.++ .||-.-.+-+-..++.+.|.+.++
T Consensus 811 ieLgMlEeA~~lYr~ckR~D-----LlNKlyQs~g~w~eA~eiAE~~DRiHLr---~Tyy~yA~~Lear~Di~~AleyyE 882 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKRYD-----LLNKLYQSQGMWSEAFEIAETKDRIHLR---NTYYNYAKYLEARRDIEAALEYYE 882 (1416)
T ss_pred HHHhhHHHHHHHHHHHHHHH-----HHHHHHHhcccHHHHHHHHhhccceehh---hhHHHHHHHHHhhccHHHHHHHHH
Confidence 44566666666665543322 2233444556666666665432211111 122222233333444444444443
Q ss_pred HHHHhCCCCCcchHHHHHHHHHHcCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCccChhhH
Q 047992 182 LVIKLGMSCVRRVRNSVLAVYVKCGKLIWARRFFESMDEKDGVAWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTF 261 (868)
Q Consensus 182 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~ 261 (868)
. .|.. .+-...++. .++....++...+..+. .|.--..-+-..|+.+.|+.+|..... |
T Consensus 883 K---~~~h--afev~rmL~-----e~p~~~e~Yv~~~~d~~--L~~WWgqYlES~GemdaAl~~Y~~A~D---------~ 941 (1416)
T KOG3617|consen 883 K---AGVH--AFEVFRMLK-----EYPKQIEQYVRRKRDES--LYSWWGQYLESVGEMDAALSFYSSAKD---------Y 941 (1416)
T ss_pred h---cCCh--HHHHHHHHH-----hChHHHHHHHHhccchH--HHHHHHHHHhcccchHHHHHHHHHhhh---------h
Confidence 2 1110 000000110 11222222333333332 222222333346777777777776654 5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcccHHHHHHHHhch
Q 047992 262 NILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISACTDL 341 (868)
Q Consensus 262 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~ 341 (868)
-++++..|-.|+.++|-++-++-- |......+...|-..|++.+|..+|.+.+ +|...|+.|-..
T Consensus 942 fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnAIRlcKEn 1006 (1416)
T KOG3617|consen 942 FSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNAIRLCKEN 1006 (1416)
T ss_pred hhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHHHHHHHhc
Confidence 666777777788888877766543 55666677788888888888888887764 455566655433
Q ss_pred hhHHHHHH------------HHHHHHHhCCCCCccHHHHHHHHHHcCCCHHHHHHHHHhcCC--------------CCee
Q 047992 342 KALAMGME------------IHSLAVKMGFTDDVLVGNSLINMYSKCEELEAAERVFDMIKD--------------KDVY 395 (868)
Q Consensus 342 ~~~~~a~~------------i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~vf~~~~~--------------~~~~ 395 (868)
+--++-.. .-.+..+.|. -....+..|-|.|.+..|.++--+-.+ .|+.
T Consensus 1007 d~~d~L~nlal~s~~~d~v~aArYyEe~g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ 1081 (1416)
T KOG3617|consen 1007 DMKDRLANLALMSGGSDLVSAARYYEELGG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPK 1081 (1416)
T ss_pred CHHHHHHHHHhhcCchhHHHHHHHHHHcch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHH
Confidence 22211100 0011111111 122334556677777766654322221 2444
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCeeehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCe----eehhhh
Q 047992 396 SWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNT----ASWNSL 471 (868)
Q Consensus 396 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~----~~~~~l 471 (868)
..+--..-+..+.++++|..++-..++ |...+.. ++..++.-..++-+.|.-...-.|+. .....+
T Consensus 1082 ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~Alql-C~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqv 1151 (1416)
T KOG3617|consen 1082 LLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQL-CKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQV 1151 (1416)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHH-HhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHH
Confidence 444455556666777777776655442 1222222 22223333333333332111011222 233445
Q ss_pred HHHHHhcCChhHHHHHHHHh
Q 047992 472 IAGYQQLGQKNNALGVFRKM 491 (868)
Q Consensus 472 i~~~~~~g~~~~A~~~~~~m 491 (868)
...+.++|.+..|-+-|.+.
T Consensus 1152 ae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1152 AELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHHHHhccchHHHHHHHhhh
Confidence 56677777777776666544
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.0046 Score=76.50 Aligned_cols=233 Identities=11% Similarity=0.044 Sum_probs=126.1
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhcCC-------CC--eehHHHHHHHHHhcCChhHHHHHHHHhHhC----CCCC---Cee
Q 047992 367 NSLINMYSKCEELEAAERVFDMIKD-------KD--VYSWNSMIAGYCQAGYCGKAYELFIKMQES----DVPP---NVI 430 (868)
Q Consensus 367 ~~li~~y~~~g~~~~A~~vf~~~~~-------~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p---~~~ 430 (868)
+.+...+...|++++|...+++... +. ..++..+...+...|++++|...+++.... +... ...
T Consensus 495 ~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 574 (903)
T PRK04841 495 SVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEF 574 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHH
Confidence 3445556667777777777665542 11 123444555677788888888877765532 2111 111
Q ss_pred ehhhHHHHHHhcCCHHHHHHHHHhcccCCC---CCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCC-HHhHHHH
Q 047992 431 TWNVLISGYIQNGNEDEAVDLFQRMGKNDK---VKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPN-CVTILSV 506 (868)
Q Consensus 431 t~~~li~~~~~~g~~~~A~~~f~~m~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l 506 (868)
.+..+...+...|++++|...+++...... .......+..+...+...|++++|.+.+.+.....-... ...+
T Consensus 575 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~--- 651 (903)
T PRK04841 575 LLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDW--- 651 (903)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhH---
Confidence 233344556667888888887776643210 001122233344556667777777776666532100000 0000
Q ss_pred HHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCce-e------cHHHHHHHHhc
Q 047992 507 LPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMSSKDII-T------WNSLICGYVLH 579 (868)
Q Consensus 507 l~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~d~~-~------~~~li~~~~~~ 579 (868)
-..........+...|+.+.|.+.+.....+... . +..+..++...
T Consensus 652 ---------------------------~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 704 (903)
T PRK04841 652 ---------------------------IANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILL 704 (903)
T ss_pred ---------------------------hhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHc
Confidence 0000011123445578888888887665432211 1 23456667778
Q ss_pred CChHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhh
Q 047992 580 GFWHAALDLFDQMKSF----GLKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITE 629 (868)
Q Consensus 580 g~~~~A~~l~~~m~~~----g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 629 (868)
|++++|..++++.... |..++. .+...+..++...|+.++|...+....+
T Consensus 705 g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 705 GQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8888888888877652 222322 3444555567777888888887777665
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.50 E-value=5.1e-05 Score=82.46 Aligned_cols=195 Identities=10% Similarity=-0.028 Sum_probs=105.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHh
Q 047992 538 MNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGL-KPNR--GTFLSIILAH 611 (868)
Q Consensus 538 ~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~--~t~~~ll~a~ 611 (868)
...+...+..+|++++|.+.+++.. +.+...+..+...|...|++++|+..+++...... .|+. ..+..+...+
T Consensus 117 ~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~ 196 (355)
T cd05804 117 LGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFY 196 (355)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHH
Confidence 3344556666677777766666543 33445556666666677777777777776665311 1222 1233455556
Q ss_pred hccCChHHHHHHHHHhhhhcCCCCChh-H--HHHHHHhhhhcCChHHHHHH---HHhC-CCCCC---HHHHHHHHHHHHh
Q 047992 612 SLAGMVDLGKKVFCSITECYQIIPMIE-H--YSAMIDLYGRSGKLEEAMEF---IEDM-PIEPD---SSIWEALLTACRI 681 (868)
Q Consensus 612 ~~~g~~~~a~~~~~~m~~~~~~~p~~~-~--y~~lvd~l~r~g~~~eA~~~---i~~~-~~~p~---~~~w~~ll~a~~~ 681 (868)
...|+.++|..+|+.........+... . ...+...+...|..+.+... .... +..|+ .....+...++..
T Consensus 197 ~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 276 (355)
T cd05804 197 LERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAG 276 (355)
T ss_pred HHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhc
Confidence 667777777777776543211111111 1 11222233333433222222 1111 11111 1222344555667
Q ss_pred cCCHHHHHHHHHHHhccC---------CCCchhHHHHHHHHhhcCCChhHHHHHHHHHhc
Q 047992 682 HGNIDLAVLAIERLFDLE---------PGDVLIQRLILQIYAICGKPEDALKVRKLEREN 732 (868)
Q Consensus 682 ~~~~~~a~~~~~~~~~l~---------p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 732 (868)
.|+.+.|....+.+.... +......++.+..+...|++++|.+........
T Consensus 277 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 277 AGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred CCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 788888888887765422 123566688899999999999999876555443
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.48 E-value=6.8e-06 Score=83.34 Aligned_cols=180 Identities=14% Similarity=0.084 Sum_probs=114.0
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-Cc---eecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH----H
Q 047992 534 SLPVMNSLIDTYAKSGNIVYSRTIFDGMSS--K-DI---ITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRG----T 603 (868)
Q Consensus 534 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~-d~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t 603 (868)
....+..++..|.+.|++++|...|+++.. | +. ..|..+...|...|++++|+..|+++.+ ..|+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIR--LHPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCCchHHH
Confidence 455666677777777888888877776543 2 22 3556677777777888888888888776 445432 2
Q ss_pred HHHHHHHhhcc--------CChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhCCCCCCHHHHHHH
Q 047992 604 FLSIILAHSLA--------GMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPIEPDSSIWEAL 675 (868)
Q Consensus 604 ~~~ll~a~~~~--------g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~~~~p~~~~w~~l 675 (868)
+..+..++... |+.++|.+.|+.+...+.-.+.. +..+ .+.+...... . .....+
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~--~~a~----~~~~~~~~~~---~--------~~~~~~ 172 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYA--PDAK----KRMDYLRNRL---A--------GKELYV 172 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhH--HHHH----HHHHHHHHHH---H--------HHHHHH
Confidence 33333344433 56666777777666543222211 1111 1111111110 0 011244
Q ss_pred HHHHHhcCCHHHHHHHHHHHhccCCCC---chhHHHHHHHHhhcCCChhHHHHHHHHHhc
Q 047992 676 LTACRIHGNIDLAVLAIERLFDLEPGD---VLIQRLILQIYAICGKPEDALKVRKLEREN 732 (868)
Q Consensus 676 l~a~~~~~~~~~a~~~~~~~~~l~p~~---~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 732 (868)
...+...|+.+.|...++++++..|++ +.++..++.+|...|++++|.+..+.+..+
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 556778899999999999999997765 478999999999999999999988877544
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.9e-05 Score=84.96 Aligned_cols=295 Identities=13% Similarity=0.149 Sum_probs=173.7
Q ss_pred HHHHHcCCCHHHHHHHHHhcCC--CCeeh-HHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCeeehhhHHHHHH-h----
Q 047992 370 INMYSKCEELEAAERVFDMIKD--KDVYS-WNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNVLISGYI-Q---- 441 (868)
Q Consensus 370 i~~y~~~g~~~~A~~vf~~~~~--~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~-~---- 441 (868)
...+...|++++|.+.++.-.. .|..+ .......+.+.|+.++|...|..+++.+ |+...|-..+..+. .
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhccc
Confidence 3456778888888888877554 24333 4556777888888888888888888775 45555544433332 1
Q ss_pred -cCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCCh-hHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHH
Q 047992 442 -NGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQK-NNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKV 519 (868)
Q Consensus 442 -~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 519 (868)
....+....+++++.... |.......+.-.+.....+ ..+...+..+...|+++-...+.++ +.........
T Consensus 89 ~~~~~~~~~~~y~~l~~~y---p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~L---y~d~~K~~~i 162 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKY---PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPL---YKDPEKAAII 162 (517)
T ss_pred ccccHHHHHHHHHHHHHhC---ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHH---HcChhHHHHH
Confidence 224666777777776554 3333332232222222222 2334445555566654432222222 2211111111
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhc----CCHHHHHHHHhcCCCCCceec--HHHHHHHHhcCChHHHHHHHHHHH
Q 047992 520 KEIHGCVLRRSLESSLPVMNSLIDTYAKS----GNIVYSRTIFDGMSSKDIITW--NSLICGYVLHGFWHAALDLFDQMK 593 (868)
Q Consensus 520 ~~i~~~~~~~~~~~~~~~~~~Li~~y~k~----g~~~~A~~~f~~~~~~d~~~~--~~li~~~~~~g~~~~A~~l~~~m~ 593 (868)
..++..|... |...... =..-.+|....| .-+...|-..|+.++|++..++.+
T Consensus 163 -------------------~~l~~~~~~~l~~~~~~~~~~--~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI 221 (517)
T PF12569_consen 163 -------------------ESLVEEYVNSLESNGSFSNGD--DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAI 221 (517)
T ss_pred -------------------HHHHHHHHHhhcccCCCCCcc--ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 1122222111 1110000 000112334345 555777888999999999999999
Q ss_pred HCCCCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhCCC---CCC-
Q 047992 594 SFGLKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPI---EPD- 668 (868)
Q Consensus 594 ~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~~~---~p~- 668 (868)
+ ..|.. -.|..-...+.|.|++++|....+...+ -..-|...-+--+..+.|+|++++|++.+....- .|-
T Consensus 222 ~--htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~--LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~ 297 (517)
T PF12569_consen 222 E--HTPTLVELYMTKARILKHAGDLKEAAEAMDEARE--LDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLS 297 (517)
T ss_pred h--cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--CChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCccc
Confidence 8 67876 4556667788999999999999988765 1222333445557778899999999999887732 221
Q ss_pred -----HHHHHH--HHHHHHhcCCHHHHHHHHHHHhc
Q 047992 669 -----SSIWEA--LLTACRIHGNIDLAVLAIERLFD 697 (868)
Q Consensus 669 -----~~~w~~--ll~a~~~~~~~~~a~~~~~~~~~ 697 (868)
..+|-- ...+|.+.|++..|.+-+..+.+
T Consensus 298 ~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 298 NLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 225643 35578899999999998887755
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.00017 Score=70.28 Aligned_cols=350 Identities=13% Similarity=0.054 Sum_probs=167.7
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHhHHCCCCC-CcchHHHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHH
Q 047992 125 WSAMIGAYSRDQRWREVVELFFLMVQDGLFP-DDFLFPKILQACGNCGDFEAGKLMHSLVIKLGMSCVRRVRNSVLAVYV 203 (868)
Q Consensus 125 ~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 203 (868)
+++.+..+.+..++.+|++++..-.+. .| +....+.+-.++-...++..|...++++...-.+...+-.- -...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er--~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY-~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELER--SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLY-QAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHH-HHHHHH
Confidence 455566666677777777776665543 23 33344444444455556666666666554433211111000 112233
Q ss_pred HcCChHHHHHHHhhcCCCC-hhhHHHHHHH--HHhcCChhHHHHHHHHHHHcCCccChhhHHHHHHHHHhcCChHHHHHH
Q 047992 204 KCGKLIWARRFFESMDEKD-GVAWNSMISG--YFQIGENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQLGQCDVAMEM 280 (868)
Q Consensus 204 ~~g~~~~A~~~f~~~~~~d-~~~~~~li~~--~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 280 (868)
+.+.+.+|.++...|...+ ...-..-+.+ ....+++..+..+.++....| +..+.+.......+.|+.++|.+-
T Consensus 90 ~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred HhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHH
Confidence 4455666666665555431 1111111111 123455555555555544321 333344444444556666666666
Q ss_pred HHHHHhc-CCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcccHHHHHHHHhchhhHHHHHHHHHHHHHhCC
Q 047992 281 VKRMESL-GITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLAVKMGF 359 (868)
Q Consensus 281 ~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~ 359 (868)
|+...+- |.. ....||.-+ +..+.|++..|++...++.+.|++-.+..-..+..--.....+.....+|...+
T Consensus 167 FqaAlqvsGyq-pllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal---- 240 (459)
T KOG4340|consen 167 FQAALQVSGYQ-PLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSAL---- 240 (459)
T ss_pred HHHHHhhcCCC-chhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHH----
Confidence 6665543 333 344444433 233455666666666666666654222110000000000000000000110000
Q ss_pred CCCccHHHHHHHHHHcCCCHHHHHHHHHhcCCC-----CeehHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCeeehhh
Q 047992 360 TDDVLVGNSLINMYSKCEELEAAERVFDMIKDK-----DVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNV 434 (868)
Q Consensus 360 ~~~~~~~~~li~~y~~~g~~~~A~~vf~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 434 (868)
+..+|.-...+.+.|+.+.|.+.+..|+.+ |+++...+.-.- -.+++.+..+-+.-+...+ +-...||..
T Consensus 241 ---~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFAN 315 (459)
T KOG4340|consen 241 ---VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFAN 315 (459)
T ss_pred ---HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHH
Confidence 011233334566789999999999999864 666655443222 2344444444444444443 234568888
Q ss_pred HHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHh
Q 047992 435 LISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKM 491 (868)
Q Consensus 435 li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 491 (868)
++-.|+++.-++.|-+++.+-....-.-.+...|+.+=......-.+++|++-+..+
T Consensus 316 lLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 316 LLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred HHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 888999999999988888765332111122333333333333445566666555443
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.2e-06 Score=88.20 Aligned_cols=159 Identities=13% Similarity=0.202 Sum_probs=105.2
Q ss_pred HHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhch
Q 047992 437 SGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVAS 516 (868)
Q Consensus 437 ~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 516 (868)
..+...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+. ..|. +..-
T Consensus 110 ~i~~~~~~~~~AL~~l~~~-------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~-~l~q----------- 168 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG-------GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDS-ILTQ----------- 168 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT-------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCH-HHHH-----------
T ss_pred HHHHHcCCHHHHHHHHHcc-------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcH-HHHH-----------
Confidence 4456677788777776543 24455556677788888888888888887743 2232 2211
Q ss_pred HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCceecHHHHHHHHhcCChHHHHHHHHHHH
Q 047992 517 NKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMSS---KDIITWNSLICGYVLHGFWHAALDLFDQMK 593 (868)
Q Consensus 517 ~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~ 593 (868)
+..+.+..+.-.+.+.+|..+|+++.+ +++...|.+..++.+.|++++|.+++++..
T Consensus 169 --------------------La~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al 228 (290)
T PF04733_consen 169 --------------------LAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEAL 228 (290)
T ss_dssp --------------------HHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHC
T ss_pred --------------------HHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 233445555444578888888888764 355667888888899999999999999877
Q ss_pred HCCCCCCH-HHHHHHHHHhhccCCh-HHHHHHHHHhhhhcCCCCChh
Q 047992 594 SFGLKPNR-GTFLSIILAHSLAGMV-DLGKKVFCSITECYQIIPMIE 638 (868)
Q Consensus 594 ~~g~~p~~-~t~~~ll~a~~~~g~~-~~a~~~~~~m~~~~~~~p~~~ 638 (868)
+ ..|+. .|+..++.++.+.|.. +...+++.++...++-.|-+.
T Consensus 229 ~--~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~ 273 (290)
T PF04733_consen 229 E--KDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVK 273 (290)
T ss_dssp C--C-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHH
T ss_pred H--hccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHH
Confidence 6 45655 6777777778888888 667788888887655444333
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.40 E-value=9e-06 Score=86.52 Aligned_cols=150 Identities=17% Similarity=0.163 Sum_probs=108.7
Q ss_pred HHHHHHHHHH-HHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHH
Q 047992 517 NKVKEIHGCV-LRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQM 592 (868)
Q Consensus 517 ~~~~~i~~~~-~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m 592 (868)
....+++-.+ ...+...|+.+...|.-.|--.|+++.|...|+... +.|...||.+...++...+.++|+.-|++.
T Consensus 411 ~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rA 490 (579)
T KOG1125|consen 411 AHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRA 490 (579)
T ss_pred HHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHH
Confidence 3333443333 344545788999999999999999999999999764 558899999999999999999999999999
Q ss_pred HHCCCCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhCCCCCCHHH
Q 047992 593 KSFGLKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPIEPDSSI 671 (868)
Q Consensus 593 ~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~~~~p~~~~ 671 (868)
++ ++|+- .....+.-+|...|.++||.++|-+...-.... +.+ ++.| .++..+
T Consensus 491 Lq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks--------------~~~---------~~~~-~~se~i 544 (579)
T KOG1125|consen 491 LQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKS--------------RNH---------NKAP-MASENI 544 (579)
T ss_pred Hh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcc--------------ccc---------ccCC-cchHHH
Confidence 99 89987 345567778999999999998887654311000 000 0001 125568
Q ss_pred HHHHHHHHHhcCCHHHHHHHH
Q 047992 672 WEALLTACRIHGNIDLAVLAI 692 (868)
Q Consensus 672 w~~ll~a~~~~~~~~~a~~~~ 692 (868)
|.+|=.+....++.|.+.+++
T Consensus 545 w~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 545 WQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred HHHHHHHHHHcCCchHHHHhc
Confidence 888887777777777655543
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.39 E-value=3.9e-07 Score=59.43 Aligned_cols=32 Identities=38% Similarity=0.581 Sum_probs=16.8
Q ss_pred CCccChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 047992 253 EIKLGVVTFNILIRSYNQLGQCDVAMEMVKRM 284 (868)
Q Consensus 253 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 284 (868)
|+.||..|||+||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555544
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.37 E-value=6.6e-05 Score=79.45 Aligned_cols=213 Identities=11% Similarity=0.050 Sum_probs=146.8
Q ss_pred HHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCce----------ecHHHHH
Q 047992 505 SVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMSSKDII----------TWNSLIC 574 (868)
Q Consensus 505 ~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~d~~----------~~~~li~ 574 (868)
-+.++.-+..++..+.+-+...+.. ..+..-++.....|...|.+......-+...+..-. +...+..
T Consensus 229 ~lgnaaykkk~f~~a~q~y~~a~el--~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~ 306 (539)
T KOG0548|consen 229 ELGNAAYKKKDFETAIQHYAKALEL--ATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGN 306 (539)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhH--hhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhh
Confidence 3444444555666666666666663 356666777778888888877766655543322111 2222445
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCCh--hHHHHHHHhhhhcCC
Q 047992 575 GYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMI--EHYSAMIDLYGRSGK 652 (868)
Q Consensus 575 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~y~~lvd~l~r~g~ 652 (868)
+|...++++.|+..|++.+..-..||..+ +...++++........ -+.|.. +--.+ ...+-+.|+
T Consensus 307 a~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~k-Gne~Fk~gd 373 (539)
T KOG0548|consen 307 AYTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEEREK-GNEAFKKGD 373 (539)
T ss_pred hhhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHHH-HHHHHhccC
Confidence 66677889999999999887656665332 2234455555444332 233432 12222 556678999
Q ss_pred hHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHH
Q 047992 653 LEEAMEFIEDM-PIEPDS-SIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLER 730 (868)
Q Consensus 653 ~~eA~~~i~~~-~~~p~~-~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 730 (868)
+.+|...+.++ ...|+. ..|.....++...|++..|..-+++.++++|+....|.-=+-++....+|++|.+....-.
T Consensus 374 y~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eal 453 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEAL 453 (539)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998 455654 4777777777889999999999999999999999999999999999999999999887554
Q ss_pred hc
Q 047992 731 EN 732 (868)
Q Consensus 731 ~~ 732 (868)
+.
T Consensus 454 e~ 455 (539)
T KOG0548|consen 454 EL 455 (539)
T ss_pred hc
Confidence 43
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.36 E-value=3.6e-07 Score=59.57 Aligned_cols=34 Identities=41% Similarity=0.847 Sum_probs=31.8
Q ss_pred cCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHH
Q 047992 287 LGITPDVFTWTCMISGFAQNGRTSQALDLFKEMS 320 (868)
Q Consensus 287 ~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 320 (868)
+|+.||..|||+||.+|++.|+.++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4789999999999999999999999999999983
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.3e-05 Score=77.79 Aligned_cols=95 Identities=13% Similarity=0.166 Sum_probs=47.9
Q ss_pred hhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHH-HhcCC--HHHHHHHHHHHhccCCCCchhHHHHHH
Q 047992 637 IEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPD-SSIWEALLTAC-RIHGN--IDLAVLAIERLFDLEPGDVLIQRLILQ 711 (868)
Q Consensus 637 ~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~-~~~w~~ll~a~-~~~~~--~~~a~~~~~~~~~l~p~~~~~~~~l~~ 711 (868)
.+.|..+..+|...|++++|.+.+++. ...|+ ..+|..+..+. ...|+ .+.|..+++++++++|+++.++.+|+.
T Consensus 73 ~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~ 152 (198)
T PRK10370 73 SEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLAS 152 (198)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHH
Confidence 334444444555555555555555544 23332 33444444432 34344 355555555555555555555555555
Q ss_pred HHhhcCCChhHHHHHHHHHh
Q 047992 712 IYAICGKPEDALKVRKLERE 731 (868)
Q Consensus 712 ~y~~~g~~~~a~~~~~~m~~ 731 (868)
.|...|++++|...++.+.+
T Consensus 153 ~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 153 DAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHcCCHHHHHHHHHHHHh
Confidence 55555555555555555443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.7e-05 Score=80.34 Aligned_cols=181 Identities=14% Similarity=0.009 Sum_probs=126.1
Q ss_pred CHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCC-C-ChhHHHHHHHHHHhcCCHHHHHHHHhcCCCC---Cce---ecH
Q 047992 499 NCVTILSVLPACAYLVASNKVKEIHGCVLRRSLE-S-SLPVMNSLIDTYAKSGNIVYSRTIFDGMSSK---DII---TWN 570 (868)
Q Consensus 499 ~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~-~-~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~---d~~---~~~ 570 (868)
....+.....++...|+.+.+...+..+++..-. + ....+..+...|.+.|++++|...|+++.+. +.. .|.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 3455666667788899999999999998874321 1 1246678899999999999999999987532 232 455
Q ss_pred HHHHHHHhc--------CChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHH
Q 047992 571 SLICGYVLH--------GFWHAALDLFDQMKSFGLKPNRGT-FLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYS 641 (868)
Q Consensus 571 ~li~~~~~~--------g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~ 641 (868)
.+..++.+. |+.++|++.|+++.. ..|+..- ...+..... . .... ..+..
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~a~~~~~~----~------~~~~---------~~~~~ 170 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIR--RYPNSEYAPDAKKRMDY----L------RNRL---------AGKEL 170 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHH--HCCCChhHHHHHHHHHH----H------HHHH---------HHHHH
Confidence 556666654 788999999999998 5676532 211111100 0 0000 01223
Q ss_pred HHHHhhhhcCChHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCC
Q 047992 642 AMIDLYGRSGKLEEAMEFIEDM----PIEPD-SSIWEALLTACRIHGNIDLAVLAIERLFDLEP 700 (868)
Q Consensus 642 ~lvd~l~r~g~~~eA~~~i~~~----~~~p~-~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p 700 (868)
.+.+.+.+.|++++|...+++. |-.|. ...|..+..++...|+.+.|...++.+..--|
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 5677888999999999988876 43443 45888999999999999999998888766555
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.31 E-value=7.6e-05 Score=77.99 Aligned_cols=196 Identities=12% Similarity=0.071 Sum_probs=132.8
Q ss_pred chHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcC-CHHHHHHHHhcCC---CCCceecHHHHHHHHhcCCh--HHHHH
Q 047992 515 ASNKVKEIHGCVLRRSLES-SLPVMNSLIDTYAKSG-NIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFW--HAALD 587 (868)
Q Consensus 515 ~~~~~~~i~~~~~~~~~~~-~~~~~~~Li~~y~k~g-~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~--~~A~~ 587 (868)
..+.|......+++ +.| +..+++....++.+.| +++++...++++. +++...|+-..-.+.+.|.. +++++
T Consensus 52 ~serAL~lt~~aI~--lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~ 129 (320)
T PLN02789 52 RSPRALDLTADVIR--LNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELE 129 (320)
T ss_pred CCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHH
Confidence 33444444444444 333 3445555555666666 5788888887654 45666787665556666653 67888
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhc---CCh----HHHHHH
Q 047992 588 LFDQMKSFGLKPN-RGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRS---GKL----EEAMEF 659 (868)
Q Consensus 588 l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~---g~~----~eA~~~ 659 (868)
.++++++ ..|+ ...|.....++.+.|++++++++++.+.+.-.- +...|.-..-++.+. |.+ +++.++
T Consensus 130 ~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~--N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y 205 (320)
T PLN02789 130 FTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR--NNSAWNQRYFVITRSPLLGGLEAMRDSELKY 205 (320)
T ss_pred HHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC--chhHHHHHHHHHHhccccccccccHHHHHHH
Confidence 8888887 5664 477887888888889999999999988874222 233333333333332 333 567777
Q ss_pred HHhC-CCCC-CHHHHHHHHHHHHhc----CCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhc
Q 047992 660 IEDM-PIEP-DSSIWEALLTACRIH----GNIDLAVLAIERLFDLEPGDVLIQRLILQIYAIC 716 (868)
Q Consensus 660 i~~~-~~~p-~~~~w~~ll~a~~~~----~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 716 (868)
++++ ...| |...|+.+.+.+..+ ++...|...+.++++.+|+++.+...|+.+|...
T Consensus 206 ~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 206 TIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 7555 5555 455999999998874 3456788899999999999999999999999864
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00029 Score=76.55 Aligned_cols=218 Identities=13% Similarity=0.076 Sum_probs=135.2
Q ss_pred hhchHHHHHHHHHHHHhCCCCChhHHH---HHHHHHHhcCCHHHHHHHHhcCCCCCce---ecHHHHHHHHhcCChHHHH
Q 047992 513 LVASNKVKEIHGCVLRRSLESSLPVMN---SLIDTYAKSGNIVYSRTIFDGMSSKDII---TWNSLICGYVLHGFWHAAL 586 (868)
Q Consensus 513 ~~~~~~~~~i~~~~~~~~~~~~~~~~~---~Li~~y~k~g~~~~A~~~f~~~~~~d~~---~~~~li~~~~~~g~~~~A~ 586 (868)
.|+.+.+..++..+++. .+.+...+. .+.......|..+.+.+.++...+.+.. .+..+...+...|++++|+
T Consensus 56 ~g~~~~A~~~~~~~l~~-~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~ 134 (355)
T cd05804 56 AGDLPKALALLEQLLDD-YPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAE 134 (355)
T ss_pred cCCHHHHHHHHHHHHHH-CCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 34555555555554442 122332332 2222223356666677776654333333 3344556788999999999
Q ss_pred HHHHHHHHCCCCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCCh--hHHHHHHHhhhhcCChHHHHHHHHhC
Q 047992 587 DLFDQMKSFGLKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMI--EHYSAMIDLYGRSGKLEEAMEFIEDM 663 (868)
Q Consensus 587 ~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~y~~lvd~l~r~g~~~eA~~~i~~~ 663 (868)
+.+++..+ ..|+. ..+..+..++...|++++|..+++...+.....|.. ..|..+..++...|++++|.+.+++.
T Consensus 135 ~~~~~al~--~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~ 212 (355)
T cd05804 135 EAARRALE--LNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTH 212 (355)
T ss_pred HHHHHHHh--hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999 56765 556677778899999999999999887754433443 23567888999999999999999986
Q ss_pred -CCCC--CHHHHH----HHHHHHHhcCCHHHHHHH---HHHHhccCCCC--chhHHHHHHHHhhcCCChhHHHHHHHHHh
Q 047992 664 -PIEP--DSSIWE----ALLTACRIHGNIDLAVLA---IERLFDLEPGD--VLIQRLILQIYAICGKPEDALKVRKLERE 731 (868)
Q Consensus 664 -~~~p--~~~~w~----~ll~a~~~~~~~~~a~~~---~~~~~~l~p~~--~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 731 (868)
...| ...... .++.-....|..+.+.+. ......-.|.. ...-...+..+...|++++|.+..+.++.
T Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~ 292 (355)
T cd05804 213 IAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKG 292 (355)
T ss_pred hccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 2223 222211 333334455654444443 22222221221 22224577788899999999999888865
Q ss_pred cC
Q 047992 732 NT 733 (868)
Q Consensus 732 ~~ 733 (868)
..
T Consensus 293 ~~ 294 (355)
T cd05804 293 RA 294 (355)
T ss_pred HH
Confidence 43
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.003 Score=67.09 Aligned_cols=79 Identities=10% Similarity=0.134 Sum_probs=60.7
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCccChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCeeeHHHHHH
Q 047992 222 DGVAWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMIS 301 (868)
Q Consensus 222 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 301 (868)
|+.+|+.||+-+-.. .++++.+.++++... .+.....|..-|.+-.+..+++..+++|.+....- .+...|..-|+
T Consensus 19 di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lYl~ 94 (656)
T KOG1914|consen 19 DIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLYLS 94 (656)
T ss_pred cHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHHHH
Confidence 888999999977655 899999999998753 23355778888888889999999999998876552 35666776665
Q ss_pred HHH
Q 047992 302 GFA 304 (868)
Q Consensus 302 ~~~ 304 (868)
---
T Consensus 95 YVR 97 (656)
T KOG1914|consen 95 YVR 97 (656)
T ss_pred HHH
Confidence 443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.4e-05 Score=87.26 Aligned_cols=213 Identities=19% Similarity=0.210 Sum_probs=124.5
Q ss_pred hhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhc
Q 047992 433 NVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAY 512 (868)
Q Consensus 433 ~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 512 (868)
..+...+...|-...|..+|+++. .|.-.|..|...|+..+|.++..+-.+ -+
T Consensus 402 ~~laell~slGitksAl~I~Erle----------mw~~vi~CY~~lg~~~kaeei~~q~le--k~--------------- 454 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE----------MWDPVILCYLLLGQHGKAEEINRQELE--KD--------------- 454 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH----------HHHHHHHHHHHhcccchHHHHHHHHhc--CC---------------
Confidence 556667777888888888888763 466677777777777777777666553 23
Q ss_pred hhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCceecHHHHHHHHhcCChHHHHHHHHHH
Q 047992 513 LVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMSSKDIITWNSLICGYVLHGFWHAALDLFDQM 592 (868)
Q Consensus 513 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m 592 (868)
||+..|..|.|.....--++.|.++++....+-..+|+..+ .+.+++.++.+.|+.-
T Consensus 455 --------------------~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~---~~~~~fs~~~~hle~s 511 (777)
T KOG1128|consen 455 --------------------PDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLI---LSNKDFSEADKHLERS 511 (777)
T ss_pred --------------------CcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhcccc---ccchhHHHHHHHHHHH
Confidence 34444555555544444556666666655433222222221 2257777777777776
Q ss_pred HHCCCCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCC-CCH
Q 047992 593 KSFGLKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIE-PDS 669 (868)
Q Consensus 593 ~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~-p~~ 669 (868)
.+ +.|-. .||.+...+..+.++++.+.+.|..... +-+-+.+.|+.+-.+|.+.|+..+|...+++. ... .+.
T Consensus 512 l~--~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w 587 (777)
T KOG1128|consen 512 LE--INPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHW 587 (777)
T ss_pred hh--cCccchhHHHhccHHHHHHhhhHHHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCC
Confidence 66 45533 5666666666667777777777666554 22223445555555566666666666555554 222 222
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccC
Q 047992 670 SIWEALLTACRIHGNIDLAVLAIERLFDLE 699 (868)
Q Consensus 670 ~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~ 699 (868)
.+|....-....-|+.+.|.+++.+++++.
T Consensus 588 ~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 588 QIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred eeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 355555555555666666666666665544
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.23 E-value=4.9e-05 Score=73.41 Aligned_cols=135 Identities=21% Similarity=0.151 Sum_probs=109.6
Q ss_pred CCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC--CCCCCHHHHHH
Q 047992 597 LKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM--PIEPDSSIWEA 674 (868)
Q Consensus 597 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~--~~~p~~~~w~~ 674 (868)
..|+.......-.++...|+-+.+..+.......++.. .+.....+....+.|++.+|...+++. +-+||...|+.
T Consensus 62 ~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d--~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~ 139 (257)
T COG5010 62 RNPEDLSIAKLATALYLRGDADSSLAVLQKSAIAYPKD--RELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNL 139 (257)
T ss_pred cCcchHHHHHHHHHHHhcccccchHHHHhhhhccCccc--HHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhH
Confidence 45644322666677888888888888887765543333 333445888899999999999999998 55677889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHHhcC
Q 047992 675 LLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLERENT 733 (868)
Q Consensus 675 ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 733 (868)
+..+|-+.|+.+.|...+.+++++.|+++.++..|+..|.-.|+.++|..+...-...+
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999877665544
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=8.8e-06 Score=74.73 Aligned_cols=97 Identities=12% Similarity=-0.043 Sum_probs=85.3
Q ss_pred CCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHH
Q 047992 633 IIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLIL 710 (868)
Q Consensus 633 ~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~ 710 (868)
+.|+ ++......+...|++++|.+.++.. ...| +...|..+..+|...|+++.|...++++++++|+++.++..++
T Consensus 22 ~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg 99 (144)
T PRK15359 22 VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTG 99 (144)
T ss_pred cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 4454 4566788899999999999999987 4555 5569999999999999999999999999999999999999999
Q ss_pred HHHhhcCCChhHHHHHHHHHh
Q 047992 711 QIYAICGKPEDALKVRKLERE 731 (868)
Q Consensus 711 ~~y~~~g~~~~a~~~~~~m~~ 731 (868)
.+|...|+.++|....+....
T Consensus 100 ~~l~~~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 100 VCLKMMGEPGLAREAFQTAIK 120 (144)
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999998776544
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=8.1e-05 Score=72.37 Aligned_cols=155 Identities=12% Similarity=0.142 Sum_probs=114.4
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCChHHH
Q 047992 542 IDTYAKSGNIVYSRTIFDGMSSKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR-GTFLSIILAHSLAGMVDLG 620 (868)
Q Consensus 542 i~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a 620 (868)
+-+|.+.|+++....-.+++..+. . .|...++.++++..+++.++ ..|+. ..|..+...+...|+.++|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~-~-------~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL-H-------QFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc-c-------cccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 456788888777655544332221 0 12235667888888888877 45654 6777777888899999999
Q ss_pred HHHHHHhhhhcCCCC-ChhHHHHHHHhh-hhcCC--hHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047992 621 KKVFCSITECYQIIP-MIEHYSAMIDLY-GRSGK--LEEAMEFIEDM-PIEPD-SSIWEALLTACRIHGNIDLAVLAIER 694 (868)
Q Consensus 621 ~~~~~~m~~~~~~~p-~~~~y~~lvd~l-~r~g~--~~eA~~~i~~~-~~~p~-~~~w~~ll~a~~~~~~~~~a~~~~~~ 694 (868)
...|+...+ +.| +...+..+..++ .+.|+ .++|.+++++. ...|+ ..++..|..++...|+++.|...+++
T Consensus 93 ~~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 93 LLAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999998776 334 456677778764 67787 59999999998 55564 45888888889999999999999999
Q ss_pred HhccCCCCchhHHHH
Q 047992 695 LFDLEPGDVLIQRLI 709 (868)
Q Consensus 695 ~~~l~p~~~~~~~~l 709 (868)
+++++|.+..-+-++
T Consensus 170 aL~l~~~~~~r~~~i 184 (198)
T PRK10370 170 VLDLNSPRVNRTQLV 184 (198)
T ss_pred HHhhCCCCccHHHHH
Confidence 999999877665444
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.18 E-value=9e-05 Score=81.13 Aligned_cols=234 Identities=13% Similarity=0.076 Sum_probs=165.9
Q ss_pred CCCCccHHHHHHHHHHcCCCHHHHHHHHHhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCeeehhhHHHH
Q 047992 359 FTDDVLVGNSLINMYSKCEELEAAERVFDMIKDKDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNVLISG 438 (868)
Q Consensus 359 ~~~~~~~~~~li~~y~~~g~~~~A~~vf~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~ 438 (868)
++|--..-..+...+.++|-..+|..+|+++. .|.-.|..|...|+..+|..+..+-.+. +||...|..+.+.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhh
Confidence 44555566678889999999999999998764 5778899999999999999998888873 7888889888888
Q ss_pred HHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHH
Q 047992 439 YIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNK 518 (868)
Q Consensus 439 ~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 518 (868)
.....-++.|.++++..... +-..+.....++++++++.+.|+.-.+. .
T Consensus 467 ~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~--n--------------------- 515 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEI--N--------------------- 515 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhc--C---------------------
Confidence 88888889999998876432 1111111123356777777776654321 1
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHHHHC
Q 047992 519 VKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQMKSF 595 (868)
Q Consensus 519 ~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 595 (868)
+....+|-.+.-++.++++++.|.+.|..-. +.+..+||.+-.+|.++|+-.+|...+++..+.
T Consensus 516 -------------plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc 582 (777)
T KOG1128|consen 516 -------------PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC 582 (777)
T ss_pred -------------ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc
Confidence 1134456666777788888988888887543 445678999999999999999999999999886
Q ss_pred CCCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHH
Q 047992 596 GLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMI 644 (868)
Q Consensus 596 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv 644 (868)
+.. +...|......-...|..++|++.+.++........+.++..-++
T Consensus 583 n~~-~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv 630 (777)
T KOG1128|consen 583 NYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIV 630 (777)
T ss_pred CCC-CCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHH
Confidence 532 223344444445677888888888888766443333555554444
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00017 Score=84.15 Aligned_cols=231 Identities=14% Similarity=0.129 Sum_probs=156.0
Q ss_pred CCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCC-----HHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChh
Q 047992 462 KRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPN-----CVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLP 536 (868)
Q Consensus 462 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~ 536 (868)
|.+...|-..|+-..+.++.++|.+++++.+.. +.+. .-.|.++++.--.-|.-+...++++++.+ +-....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq--ycd~~~ 1531 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ--YCDAYT 1531 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH--hcchHH
Confidence 445567777777777788888887777776532 2121 22455555555555566666777777766 444456
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCC---CceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-Hhh
Q 047992 537 VMNSLIDTYAKSGNIVYSRTIFDGMSSK---DIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIIL-AHS 612 (868)
Q Consensus 537 ~~~~Li~~y~k~g~~~~A~~~f~~~~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~-a~~ 612 (868)
++..|...|.+.+..++|-++|+.|.++ ....|...+..+.++.+.++|-+++++.++.=.+-+++-|.+.-. .-.
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 7888888999999999999999888743 556788888888888888888899888888422223555554332 234
Q ss_pred ccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC---CCCCCHH--HHHHHHHHHHhcCCHHH
Q 047992 613 LAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM---PIEPDSS--IWEALLTACRIHGNIDL 687 (868)
Q Consensus 613 ~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~---~~~p~~~--~w~~ll~a~~~~~~~~~ 687 (868)
+.|+.+.|+.+|+.....|.- ..+.|+..+|.-.+.|..+.+.++|++. .+.|.-. .+.-.|.--..|||-+.
T Consensus 1612 k~GDaeRGRtlfEgll~ayPK--RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYPK--RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred hcCCchhhHHHHHHHHhhCcc--chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence 678888888888887775543 3444777788888888888888888776 3333322 55555665666777666
Q ss_pred HHHHHHHHhc
Q 047992 688 AVLAIERLFD 697 (868)
Q Consensus 688 a~~~~~~~~~ 697 (868)
.+.+-.++.|
T Consensus 1690 vE~VKarA~E 1699 (1710)
T KOG1070|consen 1690 VEYVKARAKE 1699 (1710)
T ss_pred HHHHHHHHHH
Confidence 6666555544
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.4e-05 Score=71.94 Aligned_cols=95 Identities=13% Similarity=0.079 Sum_probs=82.3
Q ss_pred ChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHH
Q 047992 636 MIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPD-SSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIY 713 (868)
Q Consensus 636 ~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~-~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y 713 (868)
+.+..-.+...+...|++++|+.+++-. .+.|. ..-|-.|...|+..|+++.|..++.+++.++|+|+.+|..++..|
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3445555667788899999999999987 45564 458999999999999999999999999999999999999999999
Q ss_pred hhcCCChhHHHHHHHHH
Q 047992 714 AICGKPEDALKVRKLER 730 (868)
Q Consensus 714 ~~~g~~~~a~~~~~~m~ 730 (868)
...|+.++|.+-.+...
T Consensus 114 L~lG~~~~A~~aF~~Ai 130 (157)
T PRK15363 114 LACDNVCYAIKALKAVV 130 (157)
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 99999999999766543
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00026 Score=82.34 Aligned_cols=65 Identities=11% Similarity=0.211 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCC
Q 047992 671 IWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLERENTRRNS 737 (868)
Q Consensus 671 ~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~ 737 (868)
+|--|-.-|+..++++.+..+++++++.+|.|..+..-|+..|. +++.+-..+-+.++-.|++..
T Consensus 225 ~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~~~~~ee~l~~s~l~~~ 289 (906)
T PRK14720 225 LLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKDHSLLEDYLKMSDIGNN 289 (906)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccCcchHHHHHHHhccccC
Confidence 44455566778888999999999999999999999888888887 777776667777776666543
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.11 E-value=4.4e-06 Score=55.47 Aligned_cols=34 Identities=38% Similarity=0.653 Sum_probs=32.5
Q ss_pred eecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 047992 567 ITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPN 600 (868)
Q Consensus 567 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 600 (868)
++||+||.+|++.|+.++|.++|++|.+.|++||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 4799999999999999999999999999999998
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.016 Score=61.83 Aligned_cols=148 Identities=14% Similarity=0.141 Sum_probs=103.5
Q ss_pred hhHHHHHHHHHHhCCccCCcccHHHHHHHHhchhhHHHHHHHHHHHHHhCCCC-CccHHHHHHHHHHcCCCHHHHHHHHH
Q 047992 309 TSQALDLFKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLAVKMGFTD-DVLVGNSLINMYSKCEELEAAERVFD 387 (868)
Q Consensus 309 ~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~-~~~~~~~li~~y~~~g~~~~A~~vf~ 387 (868)
.+...+.++++...-..--..+|...++...+...++.|+.+|..+.+.+..+ ++++.++++..|+ .++.+.|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 45555666666543333333567777888888888888888888888877666 7888888888776 567788888887
Q ss_pred hcCC--C-CeehHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCe--eehhhHHHHHHhcCCHHHHHHHHHhccc
Q 047992 388 MIKD--K-DVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNV--ITWNVLISGYIQNGNEDEAVDLFQRMGK 457 (868)
Q Consensus 388 ~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~li~~~~~~g~~~~A~~~f~~m~~ 457 (868)
.-.. + ++.--+..+.-+...++-..|..+|++....++.|+. ..|..+|+-=+.-|++..+.++-+++..
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 6543 2 3334456677777778888888888888877555443 5677777777777887777777766644
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00014 Score=84.94 Aligned_cols=200 Identities=11% Similarity=0.044 Sum_probs=166.9
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCC--------CceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 047992 532 ESSLPVMNSLIDTYAKSGNIVYSRTIFDGMSSK--------DIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGT 603 (868)
Q Consensus 532 ~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~--------d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 603 (868)
+....+|-..+......++++.|++++++.... -.-.|.++++....+|.-+...++|+++.+. ---...
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 345677888888888999999999999976531 2347999999999999888999999999883 323467
Q ss_pred HHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCC---HHHHHHHHHHH
Q 047992 604 FLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPD---SSIWEALLTAC 679 (868)
Q Consensus 604 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~---~~~w~~ll~a~ 679 (868)
|..|+.-|...+..++|-++|+.|.++++ .....|...++.|.|...-++|..+++++ ..-|. ..+..-....-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 88899999999999999999999999988 45566999999999999999999999886 33333 33555566667
Q ss_pred HhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHHhcCCC
Q 047992 680 RIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLERENTRR 735 (868)
Q Consensus 680 ~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 735 (868)
.++||.|+|+.+++.++.-.|.-...|..+..+-...|.-+.+..+.++.-..++.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 88999999999999999999999999999999999999999999998888766553
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00017 Score=83.09 Aligned_cols=138 Identities=9% Similarity=0.002 Sum_probs=110.4
Q ss_pred CCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCC-ChhHHH
Q 047992 564 KDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIP-MIEHYS 641 (868)
Q Consensus 564 ~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~ 641 (868)
.++..+-.+.....+.|..++|+.+++...+ +.||. ..+..+..++.+.+.+++|+..+++... ..| +..+..
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~ 158 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREIL 158 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHH
Confidence 3466677777888888999999999999888 78877 5667777888899999999998888765 344 456777
Q ss_pred HHHHhhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhH
Q 047992 642 AMIDLYGRSGKLEEAMEFIEDM-PIEPD-SSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQ 706 (868)
Q Consensus 642 ~lvd~l~r~g~~~eA~~~i~~~-~~~p~-~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~ 706 (868)
.+..+|...|+++||.++|++. ...|+ ..+|-++..+....|+.+.|..+++++++...+-+..|
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~ 225 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKL 225 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHH
Confidence 7888899999999999999988 23344 56888899999999999999999999998876555554
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00082 Score=70.80 Aligned_cols=122 Identities=22% Similarity=0.178 Sum_probs=90.6
Q ss_pred HHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcC
Q 047992 606 SIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPD-SSIWEALLTACRIHG 683 (868)
Q Consensus 606 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~-~~~w~~ll~a~~~~~ 683 (868)
+..-.....|..++|+..++.+.... +-++.-....++++.++++.++|.+.++++ ...|+ ...|-++..++...|
T Consensus 311 G~A~~~~~~~~~d~A~~~l~~L~~~~--P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g 388 (484)
T COG4783 311 GRALQTYLAGQYDEALKLLQPLIAAQ--PDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGG 388 (484)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcC
Confidence 33344556788888888888776632 223444556678888888888888888887 55666 557788888888888
Q ss_pred CHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHH
Q 047992 684 NIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLE 729 (868)
Q Consensus 684 ~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 729 (868)
+...|.+...+.+.-+|+|+..|.+|+..|...|+-.++..-+..+
T Consensus 389 ~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 389 KPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred ChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 8888888888888888888888888888888877777777666544
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00022 Score=82.18 Aligned_cols=130 Identities=18% Similarity=-0.013 Sum_probs=110.6
Q ss_pred CCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCCh-hHHHHHHHhhhhcCChHHHHHHHHhC-CCCCCHH-HHH
Q 047992 597 LKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMI-EHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPDSS-IWE 673 (868)
Q Consensus 597 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~~~-~w~ 673 (868)
...+...+..|..+-.+.|..++|...++...+ +.|+. .....+...|.+.++++||...+++. +..|+.. ...
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~---~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~ 158 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQ---RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREIL 158 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh---hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHH
Confidence 445567788888889999999999999999876 56764 35667788999999999999999998 7778776 455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHH
Q 047992 674 ALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLE 729 (868)
Q Consensus 674 ~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 729 (868)
.+..++...|.++.|..+|++++...|+++.+++.+++.+-..|+.++|....+..
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a 214 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAG 214 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55556678899999999999999999999999999999999999999999865443
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.02 E-value=3.7e-05 Score=70.12 Aligned_cols=94 Identities=24% Similarity=0.344 Sum_probs=70.5
Q ss_pred hHHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhh
Q 047992 638 EHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAI 715 (868)
Q Consensus 638 ~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 715 (868)
.....++..+...|++++|.+.++.. ...| +...|..+...+...|+++.|...++++++++|+++..+..++.+|..
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 44556666677777777777777776 4344 445777777777788888888888888888888888888888888888
Q ss_pred cCCChhHHHHHHHHHh
Q 047992 716 CGKPEDALKVRKLERE 731 (868)
Q Consensus 716 ~g~~~~a~~~~~~m~~ 731 (868)
.|++++|.+..+...+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 98 LGEPESALKALDLAIE 113 (135)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 8888888887765543
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0004 Score=72.61 Aligned_cols=182 Identities=10% Similarity=0.059 Sum_probs=131.6
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhcc
Q 047992 540 SLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHG-FWHAALDLFDQMKSFGLKPNR-GTFLSIILAHSLA 614 (868)
Q Consensus 540 ~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~ 614 (868)
.+-..+.+.+..++|....+++. +.+...|+.-...+...| ..+++++.++++.+ ..|+. ..|..-...+.+.
T Consensus 42 ~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~--~npknyqaW~~R~~~l~~l 119 (320)
T PLN02789 42 YFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAE--DNPKNYQIWHHRRWLAEKL 119 (320)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHH--HCCcchHHhHHHHHHHHHc
Confidence 33445566788889998888765 456668887777777777 57999999999998 45554 4555444445555
Q ss_pred CC--hHHHHHHHHHhhhhcCCCC-ChhHHHHHHHhhhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhc---CC--
Q 047992 615 GM--VDLGKKVFCSITECYQIIP-MIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIE-PDSSIWEALLTACRIH---GN-- 684 (868)
Q Consensus 615 g~--~~~a~~~~~~m~~~~~~~p-~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~-p~~~~w~~ll~a~~~~---~~-- 684 (868)
|. .+++..+++.+.+ +.| +...|.-...++.+.|++++|+++++++ ... -|..+|+......... |.
T Consensus 120 ~~~~~~~el~~~~kal~---~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~ 196 (320)
T PLN02789 120 GPDAANKELEFTRKILS---LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLE 196 (320)
T ss_pred CchhhHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccccccc
Confidence 65 3677888888876 334 4556777788888999999999999998 333 4566898887776544 22
Q ss_pred --HHHHHHHHHHHhccCCCCchhHHHHHHHHhhc----CCChhHHHHH
Q 047992 685 --IDLAVLAIERLFDLEPGDVLIQRLILQIYAIC----GKPEDALKVR 726 (868)
Q Consensus 685 --~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~----g~~~~a~~~~ 726 (868)
.+.+.....++++++|+|.++|..+..+|... ++..+|.+.-
T Consensus 197 ~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~ 244 (320)
T PLN02789 197 AMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVC 244 (320)
T ss_pred ccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHH
Confidence 24677777899999999999999999999773 3334455443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00061 Score=66.05 Aligned_cols=180 Identities=15% Similarity=0.095 Sum_probs=130.5
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 047992 534 SLPVMNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKP-NRGTFLSIIL 609 (868)
Q Consensus 534 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~ 609 (868)
|..+ ..+-..|.-.|+-+.+..+..... .+|....+..+....+.|++.+|+..|.+... ..| |..+++.+.-
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lga 142 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGA 142 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHH
Confidence 4455 556667777788887777777643 34555666678888889999999999999887 555 5578888888
Q ss_pred HhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhCCC-C-CCHHHHHHHHHHHHhcCCHHH
Q 047992 610 AHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPI-E-PDSSIWEALLTACRIHGNIDL 687 (868)
Q Consensus 610 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~~~-~-p~~~~w~~ll~a~~~~~~~~~ 687 (868)
+|.+.|+.++|..-|.+..+-.+-.|.+ ++-|.-.|.-.|+++.|+.++...-. . .|..+-..|.-+-...|+++.
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L~~~~p~~--~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~ 220 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALELAPNEPSI--ANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFRE 220 (257)
T ss_pred HHHHccChhHHHHHHHHHHHhccCCchh--hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHH
Confidence 8899999999999999888866666655 66666677778999999999988722 2 366677888888888999999
Q ss_pred HHHHHHHHhccCCCCchhHHHHHHHHhhcCCC
Q 047992 688 AVLAIERLFDLEPGDVLIQRLILQIYAICGKP 719 (868)
Q Consensus 688 a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~ 719 (868)
|+.++.+-+..+- -......|.++....|.|
T Consensus 221 A~~i~~~e~~~~~-~~~~~~~l~~~~~~~~~~ 251 (257)
T COG5010 221 AEDIAVQELLSEQ-AANNVAALRAAASQSGAW 251 (257)
T ss_pred HHhhccccccchh-HhhHHHHHHHhhcccchh
Confidence 9888776554332 112233455555555555
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.2e-05 Score=53.20 Aligned_cols=35 Identities=31% Similarity=0.523 Sum_probs=32.8
Q ss_pred eeHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCc
Q 047992 123 YTWSAMIGAYSRDQRWREVVELFFLMVQDGLFPDD 157 (868)
Q Consensus 123 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~ 157 (868)
++||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999984
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00021 Score=76.20 Aligned_cols=121 Identities=17% Similarity=0.145 Sum_probs=97.9
Q ss_pred HHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 047992 605 LSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIH 682 (868)
Q Consensus 605 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~ 682 (868)
.+++..+...+.+++|..+|+.+.+.. |+ ....++.++...++-.+|.+++++. ...| +...+......|...
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~---pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD---PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC---Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 456666777788888888888887642 54 3555777777788888898888877 3334 555666666678899
Q ss_pred CCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHH
Q 047992 683 GNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLER 730 (868)
Q Consensus 683 ~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 730 (868)
++.+.|..+++++.++.|++...|..|+.+|...|+|++|.-....+-
T Consensus 248 ~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999999887664
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0024 Score=63.87 Aligned_cols=106 Identities=9% Similarity=0.101 Sum_probs=72.2
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCC--HHHHHH---HHHHhhccCChHHHHHHHHHhhhhcCCCCC-hhHHHHHHHhhhhc
Q 047992 577 VLHGFWHAALDLFDQMKSFGLKPN--RGTFLS---IILAHSLAGMVDLGKKVFCSITECYQIIPM-IEHYSAMIDLYGRS 650 (868)
Q Consensus 577 ~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~---ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lvd~l~r~ 650 (868)
...+++.++++..+...+ ..|. .+++++ +-.++...|.+.+|++......+ +.|+ +..+.--.++|.-.
T Consensus 280 ie~~~~t~cle~ge~vlk--~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~---~d~~dv~~l~dRAeA~l~d 354 (504)
T KOG0624|consen 280 IEEKHWTECLEAGEKVLK--NEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD---IDPDDVQVLCDRAEAYLGD 354 (504)
T ss_pred HhhhhHHHHHHHHHHHHh--cCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh---cCchHHHHHHHHHHHHhhh
Confidence 456778888888888777 3454 244433 22344677889999988877664 6676 77787778888888
Q ss_pred CChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCC
Q 047992 651 GKLEEAMEFIEDM-PIEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEP 700 (868)
Q Consensus 651 g~~~eA~~~i~~~-~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p 700 (868)
..+++|+.-++++ ...|+.. ....|.+-++++.++..
T Consensus 355 E~YD~AI~dye~A~e~n~sn~-------------~~reGle~Akrlkkqs~ 392 (504)
T KOG0624|consen 355 EMYDDAIHDYEKALELNESNT-------------RAREGLERAKRLKKQSG 392 (504)
T ss_pred HHHHHHHHHHHHHHhcCcccH-------------HHHHHHHHHHHHHHHhc
Confidence 8999999999987 4555432 23455555666665543
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0002 Score=65.21 Aligned_cols=115 Identities=11% Similarity=0.088 Sum_probs=89.8
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CC
Q 047992 588 LFDQMKSFGLKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PI 665 (868)
Q Consensus 588 l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~ 665 (868)
+|++.+. ..|+. .....+...+...|+.++|...|+...+.. ..+...+..+..++.+.|++++|.+.+++. ..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD--PYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566666 56655 445566677788899999999998887632 235566788889999999999999998887 34
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhH
Q 047992 666 EP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQ 706 (868)
Q Consensus 666 ~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~ 706 (868)
.| +...|..+...+...|+.+.|...++++++++|++....
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 44 456888888888999999999999999999999887643
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.027 Score=58.94 Aligned_cols=198 Identities=15% Similarity=0.114 Sum_probs=116.2
Q ss_pred HhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHH-------HHHHHHHhc----CCHHHHHHHHhcCCCCCcee-
Q 047992 501 VTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMN-------SLIDTYAKS----GNIVYSRTIFDGMSSKDIIT- 568 (868)
Q Consensus 501 ~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-------~Li~~y~k~----g~~~~A~~~f~~~~~~d~~~- 568 (868)
.+|..+|+.+.+.+....+.+.+..+.- ++|+..+.. +|.++.+.- -++.+-..+++.+...|+..
T Consensus 299 ~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~--ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrq 376 (549)
T PF07079_consen 299 DRFGNLLSFKVKQVQTEEAKQYLALLKI--LDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQ 376 (549)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHh--cCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHH
Confidence 4677777778888888888887777665 555544332 233333311 11223334444444444321
Q ss_pred ----c-HHHHHHHHhcCC-hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHH
Q 047992 569 ----W-NSLICGYVLHGF-WHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSA 642 (868)
Q Consensus 569 ----~-~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~ 642 (868)
+ ---+.-+-..|. -++|+++++..++ +.|...-.-+.+.-. -.+.+..+... ....-
T Consensus 377 QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~--ft~yD~ec~n~v~~f--------vKq~Y~qaLs~-------~~~~r 439 (549)
T PF07079_consen 377 QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQ--FTNYDIECENIVFLF--------VKQAYKQALSM-------HAIPR 439 (549)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH--hccccHHHHHHHHHH--------HHHHHHHHHhh-------hhHHH
Confidence 1 111222334454 6778888887777 555443221111100 11222222221 11111
Q ss_pred HHHhhhhcCChHHHHHHHHhCCCCC----CHHHHHHHHHH--HHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhc
Q 047992 643 MIDLYGRSGKLEEAMEFIEDMPIEP----DSSIWEALLTA--CRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAIC 716 (868)
Q Consensus 643 lvd~l~r~g~~~eA~~~i~~~~~~p----~~~~w~~ll~a--~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 716 (868)
++ .-+++++...+.| +..+-+-|..| ...+|++.++.-...=+.++.| ++.+|.+++-.....
T Consensus 440 Ll----------kLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~ 508 (549)
T PF07079_consen 440 LL----------KLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMEN 508 (549)
T ss_pred HH----------HHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHH
Confidence 22 2355666665544 33466777777 3679999999999999999999 899999999999999
Q ss_pred CCChhHHHHHHH
Q 047992 717 GKPEDALKVRKL 728 (868)
Q Consensus 717 g~~~~a~~~~~~ 728 (868)
.+++||....+.
T Consensus 509 k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 509 KRYQEAWEYLQK 520 (549)
T ss_pred hhHHHHHHHHHh
Confidence 999999998764
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0012 Score=69.68 Aligned_cols=147 Identities=18% Similarity=0.149 Sum_probs=112.4
Q ss_pred ceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-HhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHH
Q 047992 566 IITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIIL-AHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMI 644 (868)
Q Consensus 566 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~-a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv 644 (868)
...|....-.+...|+.++|+..++.++. -.||.+.|..+.. .+...|++++|.+.|+.+....... ....-.+.
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~--~~l~~~~a 381 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNS--PLLQLNLA 381 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc--cHHHHHHH
Confidence 33444455566678888889998888887 5777776665554 5678888999999888887643332 23345567
Q ss_pred HhhhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhH
Q 047992 645 DLYGRSGKLEEAMEFIEDM--PIEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDA 722 (868)
Q Consensus 645 d~l~r~g~~~eA~~~i~~~--~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a 722 (868)
++|...|+..||+..++.. ..+.|+..|..|..+|-..||..++..+ .+..|+-.|+|++|
T Consensus 382 ~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~A 444 (484)
T COG4783 382 QALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQA 444 (484)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHHH
Confidence 8889999999999999987 3445677999999999999998888765 45678889999999
Q ss_pred HHHHHHHHhcC
Q 047992 723 LKVRKLERENT 733 (868)
Q Consensus 723 ~~~~~~m~~~~ 733 (868)
....+..+++.
T Consensus 445 ~~~l~~A~~~~ 455 (484)
T COG4783 445 IIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHhc
Confidence 99888777664
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.11 Score=59.34 Aligned_cols=216 Identities=16% Similarity=0.143 Sum_probs=103.8
Q ss_pred cCChhHHHHHHHHHHHcCCccChhhHHHHHHHH--HhcCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHH
Q 047992 236 IGENDEAHRLFDKMCREEIKLGVVTFNILIRSY--NQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQAL 313 (868)
Q Consensus 236 ~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 313 (868)
.+++..|+.....+.+. .|+. .|...+.++ .+.|+.++|..+++.....+.. |..|...+-.+|...++.++|.
T Consensus 22 ~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHH
Confidence 34555555555555443 1221 222223322 3456666666555555544444 5566666666666666666666
Q ss_pred HHHHHHHhCCccCCcccHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHcCC----------CHHHHH
Q 047992 314 DLFKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCE----------ELEAAE 383 (868)
Q Consensus 314 ~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g----------~~~~A~ 383 (868)
.+|+... +.-|+..-...++.++.+.+++..-.++--++.+ .++.+.+.+=++++.+...- -+.-|.
T Consensus 98 ~~Ye~~~--~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~ 174 (932)
T KOG2053|consen 98 HLYERAN--QKYPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAE 174 (932)
T ss_pred HHHHHHH--hhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHH
Confidence 6666653 3345555555566666666655544443333333 22333333333444333211 122344
Q ss_pred HHHHhcCCCC-e-eh---HHHHHHHHHhcCChhHHHHHHH-HhHhCCCCCCeeehhhHHHHHHhcCCHHHHHHHHHhccc
Q 047992 384 RVFDMIKDKD-V-YS---WNSMIAGYCQAGYCGKAYELFI-KMQESDVPPNVITWNVLISGYIQNGNEDEAVDLFQRMGK 457 (868)
Q Consensus 384 ~vf~~~~~~~-~-~~---~~~li~~~~~~g~~~~A~~l~~-~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~f~~m~~ 457 (868)
+.++.+.+.+ . .+ .-.-...+-..|++++|++++. ...+.-.+-+...-+.-++.+...+++.+-.++-.++..
T Consensus 175 ~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 175 KMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 4444444332 1 11 1111223345566777777763 333322222333334556666777777766666666554
Q ss_pred C
Q 047992 458 N 458 (868)
Q Consensus 458 ~ 458 (868)
.
T Consensus 255 k 255 (932)
T KOG2053|consen 255 K 255 (932)
T ss_pred h
Confidence 4
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00016 Score=71.33 Aligned_cols=100 Identities=19% Similarity=0.186 Sum_probs=65.7
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChH
Q 047992 576 YVLHGFWHAALDLFDQMKSFGLKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLE 654 (868)
Q Consensus 576 ~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~ 654 (868)
..+.+++.+|+..|.+.++ +.|+. +-|..-..|+++.|..+.|++-.++.+
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al-------------------------- 142 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESAL-------------------------- 142 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHH--------------------------
Confidence 4556777777777777777 56644 333334444555555444444443332
Q ss_pred HHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHH
Q 047992 655 EAMEFIEDMPIEPDSS-IWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQI 712 (868)
Q Consensus 655 eA~~~i~~~~~~p~~~-~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~ 712 (868)
.+.|... .|..|.-|+...|+++.|+++|++++++||+|..+...|...
T Consensus 143 ---------~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 143 ---------SIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIA 192 (304)
T ss_pred ---------hcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHH
Confidence 3455554 788888888888999999999999999999888666555543
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.83 E-value=2.4e-05 Score=51.38 Aligned_cols=34 Identities=44% Similarity=0.619 Sum_probs=28.9
Q ss_pred ceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 047992 566 IITWNSLICGYVLHGFWHAALDLFDQMKSFGLKP 599 (868)
Q Consensus 566 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 599 (868)
+.+||++|.+|++.|+.+.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3578888888888888888888888888888887
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.74 E-value=4.4e-05 Score=50.14 Aligned_cols=34 Identities=24% Similarity=0.375 Sum_probs=30.6
Q ss_pred ceeHHHHHHHHHhCCChhHHHHHHHHhHHCCCCC
Q 047992 122 LYTWSAMIGAYSRDQRWREVVELFFLMVQDGLFP 155 (868)
Q Consensus 122 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p 155 (868)
+.+||.+|.+|++.|+++.|.++|+.|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999887
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00082 Score=71.70 Aligned_cols=127 Identities=13% Similarity=0.136 Sum_probs=99.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCCCCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhcc
Q 047992 536 PVMNSLIDTYAKSGNIVYSRTIFDGMSSKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR-GTFLSIILAHSLA 614 (868)
Q Consensus 536 ~~~~~Li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~ 614 (868)
.+-.+|+..+...++++.|..+|+++.+.++..+..++..+...++-.+|++++++.++ ..|+. .....-...|...
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~--~~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALK--ENPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhc
Confidence 44456677777788999999999998887777777788888888888899999999887 45544 3333344457788
Q ss_pred CChHHHHHHHHHhhhhcCCCCC-hhHHHHHHHhhhhcCChHHHHHHHHhCCCCC
Q 047992 615 GMVDLGKKVFCSITECYQIIPM-IEHYSAMIDLYGRSGKLEEAMEFIEDMPIEP 667 (868)
Q Consensus 615 g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lvd~l~r~g~~~eA~~~i~~~~~~p 667 (868)
|+.+.|+.+.+.+.+ ..|+ .+.|..|+.+|...|++++|.-.++.+|+-|
T Consensus 248 ~~~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 248 KKYELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred CCHHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 889999999888876 4554 5588889999999999999999999887554
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.013 Score=57.02 Aligned_cols=166 Identities=13% Similarity=0.103 Sum_probs=105.6
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 047992 522 IHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMSSKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR 601 (868)
Q Consensus 522 i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 601 (868)
+.+.+.......+......-...|.+.|+.++|.+.......-+....|.- .+.+..+.+-|.+.+++|.+ +. +.
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~Vq--I~lk~~r~d~A~~~lk~mq~--id-ed 169 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAALNVQ--ILLKMHRFDLAEKELKKMQQ--ID-ED 169 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHHHHHH--HHHHHHHHHHHHHHHHHHHc--cc-hH
Confidence 334444443444444444445567777888888877776433333333322 33455667777777777766 22 33
Q ss_pred HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHH
Q 047992 602 GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM--PIEPDSSIWEALLTAC 679 (868)
Q Consensus 602 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~--~~~p~~~~w~~ll~a~ 679 (868)
.|.+.+..|+ |.+-.-.+++.+|+-+|++| ...|++.+.+..+.+|
T Consensus 170 ~tLtQLA~aw--------------------------------v~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~ 217 (299)
T KOG3081|consen 170 ATLTQLAQAW--------------------------------VKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCH 217 (299)
T ss_pred HHHHHHHHHH--------------------------------HHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHH
Confidence 4544444332 33334455677777777777 3677888888888888
Q ss_pred HhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHH
Q 047992 680 RIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALK 724 (868)
Q Consensus 680 ~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~ 724 (868)
...||++.|+...+.++.-+|+++.+...+.-.---.|+-.++..
T Consensus 218 l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~ 262 (299)
T KOG3081|consen 218 LQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTE 262 (299)
T ss_pred HHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHH
Confidence 888999999999999999888888777666655566677766544
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.66 E-value=4.1e-05 Score=62.99 Aligned_cols=77 Identities=25% Similarity=0.430 Sum_probs=58.3
Q ss_pred cCChHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHH
Q 047992 650 SGKLEEAMEFIEDM----PIEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKV 725 (868)
Q Consensus 650 ~g~~~eA~~~i~~~----~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~ 725 (868)
.|++++|+.+++++ |..|+...|-.+..++...|+++.|..++++ .+.+|.++....+++..|...|+|++|.++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 46677777777766 3223556777778888888888888888888 888888878888889999999999999887
Q ss_pred HH
Q 047992 726 RK 727 (868)
Q Consensus 726 ~~ 727 (868)
.+
T Consensus 81 l~ 82 (84)
T PF12895_consen 81 LE 82 (84)
T ss_dssp HH
T ss_pred Hh
Confidence 65
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.64 E-value=5.6e-05 Score=48.38 Aligned_cols=31 Identities=45% Similarity=0.865 Sum_probs=27.1
Q ss_pred eecHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 047992 567 ITWNSLICGYVLHGFWHAALDLFDQMKSFGL 597 (868)
Q Consensus 567 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 597 (868)
++||+||.+|++.|+.++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4789999999999999999999999988764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0091 Score=69.87 Aligned_cols=88 Identities=10% Similarity=0.202 Sum_probs=63.5
Q ss_pred hHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCceecHHHHHHHHhcCC
Q 047992 502 TILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMSSKDIITWNSLICGYVLHGF 581 (868)
Q Consensus 502 t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~ 581 (868)
.+..+..+|.+.|..+++..+++.+++.. +.|+.+.|-+...|+.. +++.|.+++.+.. .-|....+
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV-----------~~~i~~kq 184 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAI-----------YRFIKKKQ 184 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHH-----------HHHHhhhc
Confidence 44455555666666666666666666633 33788888899999988 9999988887642 33777778
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHH
Q 047992 582 WHAALDLFDQMKSFGLKPNRGTF 604 (868)
Q Consensus 582 ~~~A~~l~~~m~~~g~~p~~~t~ 604 (868)
+.++.+++.++.. ..|+.+.+
T Consensus 185 ~~~~~e~W~k~~~--~~~~d~d~ 205 (906)
T PRK14720 185 YVGIEEIWSKLVH--YNSDDFDF 205 (906)
T ss_pred chHHHHHHHHHHh--cCcccchH
Confidence 8899999999888 56766544
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.62 E-value=3.5e-05 Score=50.19 Aligned_cols=32 Identities=19% Similarity=0.365 Sum_probs=30.7
Q ss_pred HHHHhccCCCCchhHHHHHHHHhhcCCChhHH
Q 047992 692 IERLFDLEPGDVLIQRLILQIYAICGKPEDAL 723 (868)
Q Consensus 692 ~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~ 723 (868)
++++++++|+|+.+|..|+++|...|++++|.
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 68999999999999999999999999999986
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0012 Score=60.77 Aligned_cols=113 Identities=19% Similarity=0.153 Sum_probs=62.5
Q ss_pred cCChHHHHHHHHHhhhhcCCCC-ChhHHHHHHHhhhhcCChHHHHHHHHhCC-CCCCH----HHHHHHHHHHHhcCCHHH
Q 047992 614 AGMVDLGKKVFCSITECYQIIP-MIEHYSAMIDLYGRSGKLEEAMEFIEDMP-IEPDS----SIWEALLTACRIHGNIDL 687 (868)
Q Consensus 614 ~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lvd~l~r~g~~~eA~~~i~~~~-~~p~~----~~w~~ll~a~~~~~~~~~ 687 (868)
.|+...+...++.+.++++-.| .....-.+.+.+...|++++|.+.++... ..||. ..+-.|...+...|+++.
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4555555555666655544432 12233334455666666666666666651 12332 133344455556677777
Q ss_pred HHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHH
Q 047992 688 AVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRK 727 (868)
Q Consensus 688 a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 727 (868)
|...++.+ .-.|-.+..+.+++++|.+.|++++|...++
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 76666552 3333445566677777777777777776554
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0021 Score=61.82 Aligned_cols=177 Identities=15% Similarity=0.143 Sum_probs=131.9
Q ss_pred CCHHHHHHHHhcCCC--------CCce-ecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHhhccCChH
Q 047992 549 GNIVYSRTIFDGMSS--------KDII-TWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSII-LAHSLAGMVD 618 (868)
Q Consensus 549 g~~~~A~~~f~~~~~--------~d~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~a~~~~g~~~ 618 (868)
.+.++..+++..+.. +|.. .+..++-+....|+.+.|...++++... + |+..-...+= .-+-..|..+
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchh
Confidence 467888888876642 2222 2333445556788999999999998874 3 6553222221 1245579999
Q ss_pred HHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 047992 619 LGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM--PIEPDSSIWEALLTACRIHGNIDLAVLAIERLF 696 (868)
Q Consensus 619 ~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~--~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~ 696 (868)
+|.+++++..++- +-+...|---+-++-..|+--+|++-+... .+..|...|.-|...|...|+++.|.-.+|+++
T Consensus 104 ~A~e~y~~lL~dd--pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDD--PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccC--cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 9999999998852 334556766777777788888888887776 577889999999999999999999999999999
Q ss_pred ccCCCCchhHHHHHHHHhhcCCChhHHHHHHHH
Q 047992 697 DLEPGDVLIQRLILQIYAICGKPEDALKVRKLE 729 (868)
Q Consensus 697 ~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 729 (868)
=+.|-++-.+..|+.++.-.|--+...--|+.-
T Consensus 182 l~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy 214 (289)
T KOG3060|consen 182 LIQPFNPLYFQRLAEVLYTQGGAENLELARKYY 214 (289)
T ss_pred HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999999999999998888755544444433
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0011 Score=63.30 Aligned_cols=131 Identities=12% Similarity=0.117 Sum_probs=80.6
Q ss_pred CceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHH
Q 047992 565 DIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPN--RGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSA 642 (868)
Q Consensus 565 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~ 642 (868)
....+..+...|...|++++|+..|++..+.+..|+ ...+..+..++.+.|+.++|..++....+... -+...+..
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~ 111 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP--KQPSALNN 111 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--ccHHHHHH
Confidence 344566667777777888888888887776433332 24556666667777777777777776665321 12334445
Q ss_pred HHHhhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCC
Q 047992 643 MIDLYGRSGKLEEAMEFIEDMPIEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGK 718 (868)
Q Consensus 643 lvd~l~r~g~~~eA~~~i~~~~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 718 (868)
+..++...|+...|..-.+.. ...++.|...++++++++|++ |..+.+.+...|+
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 555565555555444332221 122677889999999999987 5566666666665
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00081 Score=68.97 Aligned_cols=176 Identities=12% Similarity=0.040 Sum_probs=113.5
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCCceec-HHHHH--HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHH
Q 047992 543 DTYAKSGNIVYSRTIFDGMSSKDIITW-NSLIC--GYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDL 619 (868)
Q Consensus 543 ~~y~k~g~~~~A~~~f~~~~~~d~~~~-~~li~--~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 619 (868)
.++.-.|+.++|.++--.+..-|.+.- -..+. ++-..++.+.|+..|++.+. +.||+.+--. .-.
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~--ldpdh~~sk~----------~~~ 244 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALR--LDPDHQKSKS----------ASM 244 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhc--cChhhhhHHh----------Hhh
Confidence 455566777777666554443333322 12222 33456788999999999888 6787654221 111
Q ss_pred HHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHH
Q 047992 620 GKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPD-----SSIWEALLTACRIHGNIDLAVLAIE 693 (868)
Q Consensus 620 a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~-----~~~w~~ll~a~~~~~~~~~a~~~~~ 693 (868)
..+.++.+.+ =..-..+.|++.+|.+.+... .+.|+ +..|.....+....|+.+.|..-.+
T Consensus 245 ~~k~le~~k~-------------~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~ 311 (486)
T KOG0550|consen 245 MPKKLEVKKE-------------RGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCN 311 (486)
T ss_pred hHHHHHHHHh-------------hhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhh
Confidence 2222222222 134456889999999999887 44454 4445555555667899999999999
Q ss_pred HHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCCCcccEE
Q 047992 694 RLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLERENTRRNSFGQCWI 743 (868)
Q Consensus 694 ~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~g~s~i 743 (868)
.+++++|.-..+|..-++.|...++|++|.+-.+..-+..-..++..+|+
T Consensus 312 ~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~ 361 (486)
T KOG0550|consen 312 EALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLR 361 (486)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHH
Confidence 99999999999999999999999999999885443322222244444444
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00049 Score=57.63 Aligned_cols=91 Identities=24% Similarity=0.342 Sum_probs=73.2
Q ss_pred HHHHHHhhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcC
Q 047992 640 YSAMIDLYGRSGKLEEAMEFIEDM-PIEPD-SSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICG 717 (868)
Q Consensus 640 y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~-~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g 717 (868)
+..+...+.+.|++++|.+.+++. ...|+ ..+|..+...+...++++.|...+++++++.|.+...+..++.+|...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445666777888999999888876 33444 3577777777888899999999999999999999889999999999999
Q ss_pred CChhHHHHHHHHH
Q 047992 718 KPEDALKVRKLER 730 (868)
Q Consensus 718 ~~~~a~~~~~~m~ 730 (868)
++++|.+..+...
T Consensus 83 ~~~~a~~~~~~~~ 95 (100)
T cd00189 83 KYEEALEAYEKAL 95 (100)
T ss_pred hHHHHHHHHHHHH
Confidence 9999988766543
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0088 Score=57.68 Aligned_cols=166 Identities=13% Similarity=0.133 Sum_probs=121.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCCCceecHHH---HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcc
Q 047992 538 MNSLIDTYAKSGNIVYSRTIFDGMSSKDIITWNSL---ICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLA 614 (868)
Q Consensus 538 ~~~Li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 614 (868)
+.-+.-+..-+|+.+.|...++++..+-+-|...+ ..-+-..|++++|++.++..++.+ +.|.+++.--+...-..
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~ 133 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQ 133 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHc
Confidence 34444555668889999988887664333333222 223456899999999999999864 33557887777777777
Q ss_pred CChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CCHHHHH
Q 047992 615 GMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIH---GNIDLAV 689 (868)
Q Consensus 615 g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~---~~~~~a~ 689 (868)
|.--+|++-++...+. +..|.+.|.-+.++|...|.++.|.--++++ -..| ++.....|....... .|++.+.
T Consensus 134 GK~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ar 211 (289)
T KOG3060|consen 134 GKNLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELAR 211 (289)
T ss_pred CCcHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 8888999988888874 4567778888999999999999999999988 3344 334555555555444 3899999
Q ss_pred HHHHHHhccCCCCchhH
Q 047992 690 LAIERLFDLEPGDVLIQ 706 (868)
Q Consensus 690 ~~~~~~~~l~p~~~~~~ 706 (868)
+.+++++++.|.+...+
T Consensus 212 kyy~~alkl~~~~~ral 228 (289)
T KOG3060|consen 212 KYYERALKLNPKNLRAL 228 (289)
T ss_pred HHHHHHHHhChHhHHHH
Confidence 99999999999765544
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.014 Score=56.78 Aligned_cols=157 Identities=12% Similarity=0.081 Sum_probs=111.8
Q ss_pred HHHHHHHhCCCCCccHHHHHHHHHHcCCCHHHHHHHHHhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCe
Q 047992 350 IHSLAVKMGFTDDVLVGNSLINMYSKCEELEAAERVFDMIKDKDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNV 429 (868)
Q Consensus 350 i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~vf~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 429 (868)
+.+.+.......+......-...|...|++++|.+...... +..+.-.=+..+.+..+.+-|.+.+++|.+-. +.
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed 169 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQID---ED 169 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hH
Confidence 34444444334444444455667889999999999988733 33333333556778888999999999999654 67
Q ss_pred eehhhHHHHHHh----cCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHH
Q 047992 430 ITWNVLISGYIQ----NGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILS 505 (868)
Q Consensus 430 ~t~~~li~~~~~----~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 505 (868)
.|.+.|..++.+ .+.+.+|.-+|++|.++. +|+..+.+-+..++...|++++|..++++..... .-++.|+.-
T Consensus 170 ~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~--~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~N 246 (299)
T KOG3081|consen 170 ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKT--PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLAN 246 (299)
T ss_pred HHHHHHHHHHHHHhccchhhhhHHHHHHHHhccc--CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHH
Confidence 788877777765 456899999999998764 7888899999999999999999999999987653 233445544
Q ss_pred HHHHHhchh
Q 047992 506 VLPACAYLV 514 (868)
Q Consensus 506 ll~a~~~~~ 514 (868)
++-.....|
T Consensus 247 liv~a~~~G 255 (299)
T KOG3081|consen 247 LIVLALHLG 255 (299)
T ss_pred HHHHHHHhC
Confidence 443333333
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00017 Score=56.68 Aligned_cols=62 Identities=18% Similarity=0.231 Sum_probs=56.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcC-CChhHHHHHHHH
Q 047992 668 DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICG-KPEDALKVRKLE 729 (868)
Q Consensus 668 ~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g-~~~~a~~~~~~m 729 (868)
++.+|..+...+...|+++.|+..++++++++|+++.+|..+|.+|...| ++++|.+..+..
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 46689999999999999999999999999999999999999999999999 799999876544
|
... |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00093 Score=59.12 Aligned_cols=66 Identities=15% Similarity=0.133 Sum_probs=38.7
Q ss_pred HHHHHHhhhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchh
Q 047992 640 YSAMIDLYGRSGKLEEAMEFIEDM-PIEPD----SSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLI 705 (868)
Q Consensus 640 y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~----~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~ 705 (868)
+..+..++.+.|++++|.+.+++. ...|+ ..+|..+..++...|+.+.|...++++++..|+++..
T Consensus 42 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 42 HYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 344555555666666666665554 22222 3355556666666777777777777777777766543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.002 Score=72.09 Aligned_cols=137 Identities=19% Similarity=0.190 Sum_probs=73.2
Q ss_pred CCCCCceecHHHHHHHHhc--C---ChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCChHHHHHHHHHhhhhcCCC
Q 047992 561 MSSKDIITWNSLICGYVLH--G---FWHAALDLFDQMKSFGLKPNRG-TFLSIILAHSLAGMVDLGKKVFCSITECYQII 634 (868)
Q Consensus 561 ~~~~d~~~~~~li~~~~~~--g---~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 634 (868)
..+.|...|...+.|.... + ...+|+++|++.++ ..||.. .+..+..++... ++..
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~----------------~~~~ 393 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVR----------------HSQQ 393 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHH----------------HhcC
Confidence 3456777788777775432 2 36789999999999 789863 333222211100 0111
Q ss_pred CChhHHHHHHHhhhhcCChHHHHHHHHhC---C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHH
Q 047992 635 PMIEHYSAMIDLYGRSGKLEEAMEFIEDM---P-IEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLIL 710 (868)
Q Consensus 635 p~~~~y~~lvd~l~r~g~~~eA~~~i~~~---~-~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~ 710 (868)
|.. .++++.|.+..++. + ...++.++.++.-.....|+++.|...++++++++| +..+|++++
T Consensus 394 ~~~------------~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG 460 (517)
T PRK10153 394 PLD------------EKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLG 460 (517)
T ss_pred Ccc------------HHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHH
Confidence 110 01222233332221 1 222334555554444455666666666666666666 356666666
Q ss_pred HHHhhcCCChhHHHHHHH
Q 047992 711 QIYAICGKPEDALKVRKL 728 (868)
Q Consensus 711 ~~y~~~g~~~~a~~~~~~ 728 (868)
.+|...|+.++|....+.
T Consensus 461 ~~~~~~G~~~eA~~~~~~ 478 (517)
T PRK10153 461 KVYELKGDNRLAADAYST 478 (517)
T ss_pred HHHHHcCCHHHHHHHHHH
Confidence 666666666666665443
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00012 Score=46.84 Aligned_cols=31 Identities=26% Similarity=0.549 Sum_probs=27.1
Q ss_pred eeHHHHHHHHHhCCChhHHHHHHHHhHHCCC
Q 047992 123 YTWSAMIGAYSRDQRWREVVELFFLMVQDGL 153 (868)
Q Consensus 123 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~ 153 (868)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 5799999999999999999999999988774
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0011 Score=58.53 Aligned_cols=95 Identities=15% Similarity=0.021 Sum_probs=78.3
Q ss_pred HHHHHHHhhhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC---chhHHHHH
Q 047992 639 HYSAMIDLYGRSGKLEEAMEFIEDM-PIEPD----SSIWEALLTACRIHGNIDLAVLAIERLFDLEPGD---VLIQRLIL 710 (868)
Q Consensus 639 ~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~----~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~---~~~~~~l~ 710 (868)
.+...+..+.+.|++++|.+.++++ ...|+ ...+..+..++...|+++.|...++++++..|++ +..+..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 4556677788899999999998887 23343 3466678888899999999999999999999986 56789999
Q ss_pred HHHhhcCCChhHHHHHHHHHhcC
Q 047992 711 QIYAICGKPEDALKVRKLERENT 733 (868)
Q Consensus 711 ~~y~~~g~~~~a~~~~~~m~~~~ 733 (868)
.+|...|++++|.+..+.+.+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHC
Confidence 99999999999999888776553
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00036 Score=53.97 Aligned_cols=55 Identities=22% Similarity=0.215 Sum_probs=36.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHH
Q 047992 676 LTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLER 730 (868)
Q Consensus 676 l~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 730 (868)
...+...|+++.|+..++++++.+|+++.++..++.+|...|++++|....+...
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445566777777777777777777777777777777777777777776665554
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00055 Score=73.39 Aligned_cols=108 Identities=18% Similarity=0.159 Sum_probs=89.1
Q ss_pred HHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCC
Q 047992 607 IILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPD-SSIWEALLTACRIHGN 684 (868)
Q Consensus 607 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~-~~~w~~ll~a~~~~~~ 684 (868)
-.......|++++|+.+|+...+.. .-+...|..+..+|.+.|++++|+..++++ .+.|+ ...|..+..+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~--P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD--PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 3456678899999999999998732 224567888888999999999999999988 55564 5588888889999999
Q ss_pred HHHHHHHHHHHhccCCCCchhHHHHHHHHhhc
Q 047992 685 IDLAVLAIERLFDLEPGDVLIQRLILQIYAIC 716 (868)
Q Consensus 685 ~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 716 (868)
++.|...++++++++|+++.....+..+....
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999888887665444
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00034 Score=54.13 Aligned_cols=61 Identities=25% Similarity=0.393 Sum_probs=52.5
Q ss_pred HHHhhhhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 047992 643 MIDLYGRSGKLEEAMEFIEDM-PIEPDSS-IWEALLTACRIHGNIDLAVLAIERLFDLEPGDV 703 (868)
Q Consensus 643 lvd~l~r~g~~~eA~~~i~~~-~~~p~~~-~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~ 703 (868)
+...+.+.|++++|.+.+++. ...|+.. +|..+..++...|+++.|...++++++++|+|+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456788999999999999998 5667655 999999999999999999999999999999875
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0052 Score=56.59 Aligned_cols=115 Identities=18% Similarity=0.091 Sum_probs=64.6
Q ss_pred cCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCCh--hHHHHHHHhhhhcCC
Q 047992 579 HGFWHAALDLFDQMKSFGLKPNR----GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMI--EHYSAMIDLYGRSGK 652 (868)
Q Consensus 579 ~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~y~~lvd~l~r~g~ 652 (868)
.|+...+.+.++++... .|+. .....+...+...|++++|...|+...... -.|.. .....+..++...|+
T Consensus 24 ~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-~d~~l~~~a~l~LA~~~~~~~~ 100 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-PDPELKPLARLRLARILLQQGQ 100 (145)
T ss_pred CCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHHcCC
Confidence 55556666666666553 2222 122223344555666666666666665532 11211 123345666667777
Q ss_pred hHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 047992 653 LEEAMEFIEDMPIE-PDSSIWEALLTACRIHGNIDLAVLAIERLF 696 (868)
Q Consensus 653 ~~eA~~~i~~~~~~-p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~ 696 (868)
+++|...++..+.+ ..+..+..+...+...|+.+.|+.+|++++
T Consensus 101 ~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 101 YDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 77777777665322 233456666667777777777777777653
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0014 Score=62.45 Aligned_cols=81 Identities=23% Similarity=0.188 Sum_probs=63.2
Q ss_pred HHHHHHHhhhhcCChHHHHHHHHhC-CCC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHH
Q 047992 639 HYSAMIDLYGRSGKLEEAMEFIEDM-PIE---PD-SSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIY 713 (868)
Q Consensus 639 ~y~~lvd~l~r~g~~~eA~~~i~~~-~~~---p~-~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y 713 (868)
.|..+...+.+.|++++|.+.+++. ... ++ ...|..+...+...|+++.|...+++++++.|+++..+..++.+|
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3555566666677777777777665 222 22 357888888899999999999999999999999999999999999
Q ss_pred hhcCCC
Q 047992 714 AICGKP 719 (868)
Q Consensus 714 ~~~g~~ 719 (868)
...|+.
T Consensus 117 ~~~g~~ 122 (172)
T PRK02603 117 HKRGEK 122 (172)
T ss_pred HHcCCh
Confidence 988873
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0017 Score=69.63 Aligned_cols=103 Identities=17% Similarity=0.173 Sum_probs=82.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCC-ChhHHHHHHHhhhh
Q 047992 572 LICGYVLHGFWHAALDLFDQMKSFGLKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIP-MIEHYSAMIDLYGR 649 (868)
Q Consensus 572 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lvd~l~r 649 (868)
-...+...|++++|+++|++.++ ..|+. ..+..+..++.+.|++++|+..++...+. .| +...|..+..+|.+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l---~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIEL---DPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHH
Confidence 34556788999999999999998 66755 66777778899999999999999998873 44 45678888899999
Q ss_pred cCChHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 047992 650 SGKLEEAMEFIEDM-PIEPDSSIWEALLTAC 679 (868)
Q Consensus 650 ~g~~~eA~~~i~~~-~~~p~~~~w~~ll~a~ 679 (868)
.|++++|...+++. .+.|+......++..|
T Consensus 83 lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999987 5667666555555555
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.46 Score=54.40 Aligned_cols=88 Identities=18% Similarity=0.259 Sum_probs=50.0
Q ss_pred HHHHHHHHHhcCCHH---HHHHHHhcCCC---CCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 047992 538 MNSLIDTYAKSGNIV---YSRTIFDGMSS---KDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAH 611 (868)
Q Consensus 538 ~~~Li~~y~k~g~~~---~A~~~f~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 611 (868)
-+.|+++|-+.++.. +|.-+++.... .|..+--.+|..|..-|-...|.++|+.|--..+.-|...+... .-.
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~~-~~~ 517 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLIF-RRA 517 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHHH-HHH
Confidence 466778887777755 34444443332 23334455677777778888888888777655566665443322 223
Q ss_pred hccCChHHHHHHHHH
Q 047992 612 SLAGMVDLGKKVFCS 626 (868)
Q Consensus 612 ~~~g~~~~a~~~~~~ 626 (868)
...|+...+...++.
T Consensus 518 ~t~g~~~~~s~~~~~ 532 (932)
T KOG2053|consen 518 ETSGRSSFASNTFNE 532 (932)
T ss_pred HhcccchhHHHHHHH
Confidence 344555555444443
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0013 Score=62.50 Aligned_cols=90 Identities=17% Similarity=-0.034 Sum_probs=72.0
Q ss_pred hhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHH
Q 047992 637 IEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPD----SSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQ 711 (868)
Q Consensus 637 ~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~----~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 711 (868)
...|..++..+...|++++|+..+++. ...|+ ..+|..+...+...|+.+.|...++++++++|.+...+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 344556666777788888888888876 33333 3478889899999999999999999999999999999999999
Q ss_pred HHh-------hcCCChhHHHHH
Q 047992 712 IYA-------ICGKPEDALKVR 726 (868)
Q Consensus 712 ~y~-------~~g~~~~a~~~~ 726 (868)
+|. ..|++++|....
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~ 136 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWF 136 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHH
Confidence 999 778877665543
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.041 Score=59.77 Aligned_cols=216 Identities=17% Similarity=0.204 Sum_probs=121.4
Q ss_pred hhHHHHHHHHhHhCCCCCCeeehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHH
Q 047992 410 CGKAYELFIKMQESDVPPNVITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFR 489 (868)
Q Consensus 410 ~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 489 (868)
+-+-+.-+++|++.|-.|+... +...++-.|.+.+|-++|.+- |.-..|+++|.
T Consensus 616 ~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~-----------------------G~enRAlEmyT 669 (1081)
T KOG1538|consen 616 YLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRS-----------------------GHENRALEMYT 669 (1081)
T ss_pred HHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHc-----------------------CchhhHHHHHH
Confidence 3344556777888887787653 445577788899998888755 44456666666
Q ss_pred HhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCceec
Q 047992 490 KMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMSSKDIITW 569 (868)
Q Consensus 490 ~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~d~~~~ 569 (868)
.|+- | -...-+...|+.+.-+.+...-.. ...++.--.+-..|+...|+.+.|..
T Consensus 670 DlRM---------F-D~aQE~~~~g~~~eKKmL~RKRA~--WAr~~kePkaAAEmLiSaGe~~KAi~------------- 724 (1081)
T KOG1538|consen 670 DLRM---------F-DYAQEFLGSGDPKEKKMLIRKRAD--WARNIKEPKAAAEMLISAGEHVKAIE------------- 724 (1081)
T ss_pred HHHH---------H-HHHHHHhhcCChHHHHHHHHHHHH--HhhhcCCcHHHHHHhhcccchhhhhh-------------
Confidence 6541 0 011112222333222222211111 00111111234455666676666644
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhh
Q 047992 570 NSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGR 649 (868)
Q Consensus 570 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r 649 (868)
..+.+|-.+-++++-.++-. .+..+...+..-+.....+.-|-++|.+|-. ...+|++...
T Consensus 725 -----i~~d~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve 785 (1081)
T KOG1538|consen 725 -----ICGDHGWVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVE 785 (1081)
T ss_pred -----hhhcccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheee
Confidence 33445555666666555433 2334444444444555666778888888865 4678999999
Q ss_pred cCChHHHHHHHHhCC-CCCCHH-HHHHHH----------HHHHhcCCHHHHHHHHHHH
Q 047992 650 SGKLEEAMEFIEDMP-IEPDSS-IWEALL----------TACRIHGNIDLAVLAIERL 695 (868)
Q Consensus 650 ~g~~~eA~~~i~~~~-~~p~~~-~w~~ll----------~a~~~~~~~~~a~~~~~~~ 695 (868)
.|+++||..+-++.| +.||.. -+...| .|+.+.|...+|.++.+++
T Consensus 786 ~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQL 843 (1081)
T KOG1538|consen 786 TQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQL 843 (1081)
T ss_pred cccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHh
Confidence 999999999999996 455543 222222 2444556666666665555
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0065 Score=55.50 Aligned_cols=104 Identities=19% Similarity=0.193 Sum_probs=75.4
Q ss_pred HhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCC--
Q 047992 626 SITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM---PIEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEP-- 700 (868)
Q Consensus 626 ~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~---~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p-- 700 (868)
...++..+.|++.+--.+...+.+.|+..||...+++. ++.-|..+.-.+..+-..-++.-.|....|++.|-.|
T Consensus 78 ea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~ 157 (251)
T COG4700 78 EATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAF 157 (251)
T ss_pred HHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCcc
Confidence 34445566777777777777777888888888877776 5666777777777777777777778888888877777
Q ss_pred CCchhHHHHHHHHhhcCCChhHHHHHHHH
Q 047992 701 GDVLIQRLILQIYAICGKPEDALKVRKLE 729 (868)
Q Consensus 701 ~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 729 (868)
..+....+++..|+..|++++|+.-.+..
T Consensus 158 r~pd~~Ll~aR~laa~g~~a~Aesafe~a 186 (251)
T COG4700 158 RSPDGHLLFARTLAAQGKYADAESAFEVA 186 (251)
T ss_pred CCCCchHHHHHHHHhcCCchhHHHHHHHH
Confidence 35666777777888888887777655544
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00047 Score=53.93 Aligned_cols=63 Identities=27% Similarity=0.402 Sum_probs=33.5
Q ss_pred hcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHH
Q 047992 649 RSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQ 711 (868)
Q Consensus 649 r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 711 (868)
..|++++|++.++++ ...| +..++..|..++...|+++.|+..+++++..+|+++..+.+++.
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 345555555555554 2223 33455555555555666666666666666666655555555543
|
... |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.055 Score=56.22 Aligned_cols=127 Identities=23% Similarity=0.236 Sum_probs=70.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcc-CChHHHHHHHHHhhhhcCCCCC----hhHHHHHHHhh
Q 047992 573 ICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLA-GMVDLGKKVFCSITECYQIIPM----IEHYSAMIDLY 647 (868)
Q Consensus 573 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~-g~~~~a~~~~~~m~~~~~~~p~----~~~y~~lvd~l 647 (868)
+..|...|++..|-+.+.++-+ .|... |++++|+++|+...+-|..... ...+.-+.+++
T Consensus 101 ~~~y~~~G~~~~aA~~~~~lA~---------------~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~ 165 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKELAE---------------IYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLY 165 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHH---------------HHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHH---------------HHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHH
Confidence 4555556665555555544432 34444 5666666666665554432222 23455667788
Q ss_pred hhcCChHHHHHHHHhC---CCCC---CHHHHHHHHHH---HHhcCCHHHHHHHHHHHhccCCCC--chhHHHHHHHHh
Q 047992 648 GRSGKLEEAMEFIEDM---PIEP---DSSIWEALLTA---CRIHGNIDLAVLAIERLFDLEPGD--VLIQRLILQIYA 714 (868)
Q Consensus 648 ~r~g~~~eA~~~i~~~---~~~p---~~~~w~~ll~a---~~~~~~~~~a~~~~~~~~~l~p~~--~~~~~~l~~~y~ 714 (868)
.+.|++++|.+++++. ..+. ...+-..++.+ +...||...|.+.+++..+.+|.- +.=+.++.++..
T Consensus 166 ~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~ 243 (282)
T PF14938_consen 166 ARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLE 243 (282)
T ss_dssp HHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHH
Confidence 8889999998888876 1111 11222233332 345689999999999999999853 333556655543
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0037 Score=67.04 Aligned_cols=120 Identities=22% Similarity=0.292 Sum_probs=88.2
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHc--CCccChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCeeeHHHH
Q 047992 222 DGVAWNSMISGYFQIGENDEAHRLFDKMCRE--EIKLGVVTFNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCM 299 (868)
Q Consensus 222 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 299 (868)
+.+....++.......+.+++..++.+.... ....-..|..++|+.|.+.|..++++++++.=...|+=||..++|.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 3444555555555566677777777777654 22223345568888888888888888888888888888888888888
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCccCCcccHHHHHHHHhch
Q 047992 300 ISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISACTDL 341 (868)
Q Consensus 300 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~ 341 (868)
|+.+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888888888887777777777777777776554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0069 Score=57.44 Aligned_cols=63 Identities=16% Similarity=0.135 Sum_probs=36.4
Q ss_pred eecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHhhccCChHHHHHHHHHhhh
Q 047992 567 ITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPN--RGTFLSIILAHSLAGMVDLGKKVFCSITE 629 (868)
Q Consensus 567 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 629 (868)
..|..+...+...|++++|+..|++.......|. ..++..+...+.+.|+.++|+.+++....
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4566666666667777777777777665322221 13455555556666666666666655544
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0076 Score=62.32 Aligned_cols=142 Identities=13% Similarity=0.155 Sum_probs=88.7
Q ss_pred ecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-hhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHh
Q 047992 568 TWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILA-HSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDL 646 (868)
Q Consensus 568 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~ 646 (868)
.|..++...-+.+..+.|..+|.+.++.+ .-+...|...... +...++.+.|.++|+...+.++.. .+.+.+.+|.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~--~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSD--PDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT---HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHH
Confidence 34555555555555666666666665421 1122333333222 233455566777777777765544 4447788888
Q ss_pred hhhcCChHHHHHHHHhC--CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHH
Q 047992 647 YGRSGKLEEAMEFIEDM--PIEPD---SSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIY 713 (868)
Q Consensus 647 l~r~g~~~eA~~~i~~~--~~~p~---~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y 713 (868)
+.+.|+.+.|..+|++. .+.++ ..+|...+.--..+|+++....+.+++.++-|++..... +++-|
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~-f~~ry 150 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLEL-FSDRY 150 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHH-HHCCT
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHH-HHHHh
Confidence 88889999999998887 22222 349999999999999999999999999999888544333 34433
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0039 Score=51.93 Aligned_cols=94 Identities=26% Similarity=0.392 Sum_probs=54.1
Q ss_pred cHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhh
Q 047992 569 WNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLY 647 (868)
Q Consensus 569 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l 647 (868)
|..+...+...|++++|+..|++..+ ..|+. ..+..+ ..++
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~------------------------------------~~~~ 44 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALE--LDPDNADAYYNL------------------------------------AAAY 44 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHh--cCCccHHHHHHH------------------------------------HHHH
Confidence 45566666777777777777777766 33432 333333 3444
Q ss_pred hhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCC
Q 047992 648 GRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEP 700 (868)
Q Consensus 648 ~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p 700 (868)
.+.|++++|.+.+++. ...| +..+|..+...+...|+.+.|...++++++..|
T Consensus 45 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 45 YKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 4445555555555443 1222 224566666666667777777777777777666
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0012 Score=65.26 Aligned_cols=86 Identities=17% Similarity=0.183 Sum_probs=74.9
Q ss_pred HHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChh
Q 047992 644 IDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPED 721 (868)
Q Consensus 644 vd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~ 721 (868)
.+-+...+++++|.+.+.++ .+.| |++.+..-..|+.+.|.++.|.+.++.++.+||..+.+|..|+-.|...|++++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 34456788999999999987 5665 556677778889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 047992 722 ALKVRKLE 729 (868)
Q Consensus 722 a~~~~~~m 729 (868)
|.+-+++-
T Consensus 168 A~~aykKa 175 (304)
T KOG0553|consen 168 AIEAYKKA 175 (304)
T ss_pred HHHHHHhh
Confidence 99986643
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0012 Score=52.48 Aligned_cols=54 Identities=19% Similarity=0.164 Sum_probs=41.9
Q ss_pred HHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHH
Q 047992 677 TACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLER 730 (868)
Q Consensus 677 ~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 730 (868)
..+...++++.|..+++++++++|+++..+..++.+|...|+|++|.+..+..-
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 456677888888888888888888888888888888888888888887766554
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0024 Score=63.74 Aligned_cols=108 Identities=12% Similarity=0.068 Sum_probs=87.2
Q ss_pred CCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CCHHHHHHHHHHHhccCCCCchhHHH
Q 047992 634 IPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIH---GNIDLAVLAIERLFDLEPGDVLIQRL 708 (868)
Q Consensus 634 ~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~---~~~~~a~~~~~~~~~l~p~~~~~~~~ 708 (868)
.-|.+-|.-|...|.+.|+.+.|..-+.+. .+.| ++.+|..+..+.... .....|..++++++.+||.|..+..+
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 335677888888888888888888888877 4444 455777777776443 36789999999999999999999999
Q ss_pred HHHHHhhcCCChhHHHHHHHHHhcCCCCCCccc
Q 047992 709 ILQIYAICGKPEDALKVRKLERENTRRNSFGQC 741 (868)
Q Consensus 709 l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~g~s 741 (868)
|+-.|...|++.+|...++.|.+..-...|..+
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~ 265 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRS 265 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCchHH
Confidence 999999999999999999999877655555443
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.015 Score=52.72 Aligned_cols=97 Identities=8% Similarity=0.051 Sum_probs=77.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhh
Q 047992 537 VMNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR-GTFLSIILAHS 612 (868)
Q Consensus 537 ~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~ 612 (868)
..-++.--+...|++++|.++|+.+. +.+..-|..+...+-..|++.+|+..|..... +.||. .++-.+..++.
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~--L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ--IKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCchHHHHHHHHHH
Confidence 34455666678899999999999654 45777899999999999999999999999998 56765 67777777888
Q ss_pred ccCChHHHHHHHHHhhhhcCCCC
Q 047992 613 LAGMVDLGKKVFCSITECYQIIP 635 (868)
Q Consensus 613 ~~g~~~~a~~~~~~m~~~~~~~p 635 (868)
..|+.+.|++.|+.....-+-.|
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~~~~~ 137 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRICGEVS 137 (157)
T ss_pred HcCCHHHHHHHHHHHHHHhccCh
Confidence 99999999999998877544333
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.56 Score=48.50 Aligned_cols=213 Identities=15% Similarity=0.099 Sum_probs=141.8
Q ss_pred hchhchHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHhcCC-----CCCce--ecHHHHHHHHh---c
Q 047992 511 AYLVASNKVKEIHGCVLRRSLES-SLPVMNSLIDTYAKSGNIVYSRTIFDGMS-----SKDII--TWNSLICGYVL---H 579 (868)
Q Consensus 511 ~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~Li~~y~k~g~~~~A~~~f~~~~-----~~d~~--~~~~li~~~~~---~ 579 (868)
-..|+.+.+++.-+..-. ..| -.-...++++..+..|+++.|.++.+.-. ++|+. .--.++.+-++ .
T Consensus 165 qr~GareaAr~yAe~Aa~--~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ld 242 (531)
T COG3898 165 QRLGAREAARHYAERAAE--KAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLD 242 (531)
T ss_pred HhcccHHHHHHHHHHHHh--hccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhc
Confidence 455666666666655544 333 34567788889999999999999998654 45543 22233333332 3
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHH
Q 047992 580 GFWHAALDLFDQMKSFGLKPNRGTF-LSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAME 658 (868)
Q Consensus 580 g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~ 658 (868)
-+...|...-.+..+ +.||-+.- +....++...|++.+|-.+++.+-+ ..|.++.....++ .|.|+ .+.+
T Consensus 243 adp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK---~ePHP~ia~lY~~--ar~gd--ta~d 313 (531)
T COG3898 243 ADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWK---AEPHPDIALLYVR--ARSGD--TALD 313 (531)
T ss_pred CChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHh---cCCChHHHHHHHH--hcCCC--cHHH
Confidence 456677777777666 78887543 3345578899999999999998865 5677665544443 34443 3333
Q ss_pred HHHhC----CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhc-CCChhHHHHHHHHHhc
Q 047992 659 FIEDM----PIEPDSS-IWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAIC-GKPEDALKVRKLEREN 732 (868)
Q Consensus 659 ~i~~~----~~~p~~~-~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~-g~~~~a~~~~~~m~~~ 732 (868)
-+++. .++||.. .--++..+-..-|++..|...++.+...+|. .+.|.+|++|-... |+-. ++|..|- +
T Consensus 314 RlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg---~vR~wlA-q 388 (531)
T COG3898 314 RLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQG---KVRQWLA-Q 388 (531)
T ss_pred HHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchH---HHHHHHH-H
Confidence 33332 3567655 5556667778899999999999999999996 57899999987665 6654 4566663 3
Q ss_pred CCC--CCCc
Q 047992 733 TRR--NSFG 739 (868)
Q Consensus 733 ~~~--k~~g 739 (868)
+++ .+|.
T Consensus 389 av~APrdPa 397 (531)
T COG3898 389 AVKAPRDPA 397 (531)
T ss_pred HhcCCCCCc
Confidence 443 4454
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.41 Score=52.95 Aligned_cols=203 Identities=14% Similarity=0.085 Sum_probs=114.0
Q ss_pred CCCcchHHHHHHHHHHcCChHHHHHHHhhcCCC-------------ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCc
Q 047992 189 SCVRRVRNSVLAVYVKCGKLIWARRFFESMDEK-------------DGVAWNSMISGYFQIGENDEAHRLFDKMCREEIK 255 (868)
Q Consensus 189 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-------------d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 255 (868)
.|.+..|..|.....+.-.++-|...|-+...- +...-.+=|++| -|++++|.+++-+|.++.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhh--
Confidence 466667776666655556666666666544321 011112223333 367778887777776542
Q ss_pred cChhhHHHHHHHHHhcCChHHHHHHHHHHHhc-CCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcccHHHH
Q 047992 256 LGVVTFNILIRSYNQLGQCDVAMEMVKRMESL-GITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSA 334 (868)
Q Consensus 256 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l 334 (868)
..|..+.+.|++-...++++.--.. .-+.-...|+.+...++....+++|.+.|..-.. ....
T Consensus 765 -------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~ 828 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQ 828 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhH
Confidence 3455666667766665555431110 0001134677777777777777777777655421 1123
Q ss_pred HHHHhchhhHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHcCCCHHHHHHHHHhcCCCCeehHHHHHHHHHhcCChhHHH
Q 047992 335 ISACTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEELEAAERVFDMIKDKDVYSWNSMIAGYCQAGYCGKAY 414 (868)
Q Consensus 335 l~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~vf~~~~~~~~~~~~~li~~~~~~g~~~~A~ 414 (868)
+.++.+..+++.-+.+- ..++.+....-.+.+|+.+.|.-++|.+.|-+-..| .+.+..|...+++.+|.
T Consensus 829 ~ecly~le~f~~LE~la-----~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~p-----kaAv~tCv~LnQW~~av 898 (1189)
T KOG2041|consen 829 IECLYRLELFGELEVLA-----RTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLP-----KAAVHTCVELNQWGEAV 898 (1189)
T ss_pred HHHHHHHHhhhhHHHHH-----HhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCc-----HHHHHHHHHHHHHHHHH
Confidence 34444444444332222 223556667777888888888888888777665554 34456667777777777
Q ss_pred HHHHHhH
Q 047992 415 ELFIKMQ 421 (868)
Q Consensus 415 ~l~~~m~ 421 (868)
++-+...
T Consensus 899 elaq~~~ 905 (1189)
T KOG2041|consen 899 ELAQRFQ 905 (1189)
T ss_pred HHHHhcc
Confidence 7766554
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0057 Score=51.27 Aligned_cols=77 Identities=14% Similarity=0.216 Sum_probs=48.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCC-ccChhhHHHHHHHHHhcCC--------hHHHHHHHHHHHhcCCCCCeeeHH
Q 047992 227 NSMISGYFQIGENDEAHRLFDKMCREEI-KLGVVTFNILIRSYNQLGQ--------CDVAMEMVKRMESLGITPDVFTWT 297 (868)
Q Consensus 227 ~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~~~~~li~~~~~~g~--------~~~A~~~~~~m~~~g~~p~~~~~~ 297 (868)
...|..+...+++.....+|..+++.|+ .|++.+|+.++.+.++..- +-..+.+++.|...+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3445556666888888889999988888 8888888888888776432 223334444444444444444444
Q ss_pred HHHHHH
Q 047992 298 CMISGF 303 (868)
Q Consensus 298 ~li~~~ 303 (868)
.++..+
T Consensus 109 ivl~~L 114 (120)
T PF08579_consen 109 IVLGSL 114 (120)
T ss_pred HHHHHH
Confidence 444333
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0015 Score=51.17 Aligned_cols=64 Identities=25% Similarity=0.456 Sum_probs=53.8
Q ss_pred hhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcC-CHHHHHHHHHHHhccCC
Q 047992 637 IEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPDSS-IWEALLTACRIHG-NIDLAVLAIERLFDLEP 700 (868)
Q Consensus 637 ~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~~~-~w~~ll~a~~~~~-~~~~a~~~~~~~~~l~p 700 (868)
...|..+...+.+.|++++|++.+++. ...|+.. +|..+..++...| +.+.|...++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 345777788888899999999998887 5556544 8888999999999 79999999999999998
|
... |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0063 Score=55.36 Aligned_cols=87 Identities=18% Similarity=0.142 Sum_probs=74.3
Q ss_pred HhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhH
Q 047992 645 DLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDA 722 (868)
Q Consensus 645 d~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a 722 (868)
.-+...|++++|+.+|+-. -..| |...|..|...|...|+++.|...+..+..++++|+.++...+..|...|+.++|
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHH
Confidence 3345689999999999876 2222 4457899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 047992 723 LKVRKLERE 731 (868)
Q Consensus 723 ~~~~~~m~~ 731 (868)
..-.....+
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 998776543
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.011 Score=51.75 Aligned_cols=92 Identities=14% Similarity=0.087 Sum_probs=70.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhH-HHHHHHhh
Q 047992 571 SLICGYVLHGFWHAALDLFDQMKSFGLKPNR--GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEH-YSAMIDLY 647 (868)
Q Consensus 571 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~-y~~lvd~l 647 (868)
.+..++-..|+.++|+.+|++....|..+.. ..+..+.+++.+.|++++|..+|+.....++-.+.... ..-+...+
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 3456778899999999999999998877653 57788888999999999999999998876544222221 22234577
Q ss_pred hhcCChHHHHHHHHh
Q 047992 648 GRSGKLEEAMEFIED 662 (868)
Q Consensus 648 ~r~g~~~eA~~~i~~ 662 (868)
...|+.+||.+.+-.
T Consensus 86 ~~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 86 YNLGRPKEALEWLLE 100 (120)
T ss_pred HHCCCHHHHHHHHHH
Confidence 889999999888754
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0083 Score=56.93 Aligned_cols=114 Identities=17% Similarity=0.197 Sum_probs=77.1
Q ss_pred HHHHhhc--CCCChhhHHHHHHHHHhc-----CChhHHHHHHHHHHHcCCccChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 047992 212 RRFFESM--DEKDGVAWNSMISGYFQI-----GENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQLGQCDVAMEMVKRM 284 (868)
Q Consensus 212 ~~~f~~~--~~~d~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 284 (868)
...|+.. ..+|..+|..++..|.+. |..+-....+..|.+-|+.-|..+|+.|++.+-+ |.+- -..+|+.+
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~ 111 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAE 111 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHH
Confidence 4456655 456788888888888754 6777778888899999999999999999988765 2211 11122221
Q ss_pred HhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcccHHHHHHHHhchhhH
Q 047992 285 ESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISACTDLKAL 344 (868)
Q Consensus 285 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~ 344 (868)
--. .-.+-+-|++++++|...|+.||..|+..++..+.+.+..
T Consensus 112 F~h-----------------yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 112 FMH-----------------YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred hcc-----------------CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHH
Confidence 110 1123456777888888888888888888888887765543
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.00092 Score=52.24 Aligned_cols=51 Identities=20% Similarity=0.236 Sum_probs=46.1
Q ss_pred HhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHH
Q 047992 680 RIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLER 730 (868)
Q Consensus 680 ~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 730 (868)
...|+++.|...++++++.+|+|+.++..|+.+|...|++++|.++.+.+.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 357999999999999999999999999999999999999999999887543
|
... |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0015 Score=45.70 Aligned_cols=42 Identities=33% Similarity=0.397 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHH
Q 047992 670 SIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQ 711 (868)
Q Consensus 670 ~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 711 (868)
.+|..|..++...|+++.|+++++++++.+|+|+.++..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 368889999999999999999999999999999999988874
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.092 Score=54.54 Aligned_cols=148 Identities=16% Similarity=0.174 Sum_probs=63.9
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCCCceecHHHHHHHHhc-CChHHHHHHHHHHHH----CCCCCC--HHHHHHHHHHhhc
Q 047992 541 LIDTYAKSGNIVYSRTIFDGMSSKDIITWNSLICGYVLH-GFWHAALDLFDQMKS----FGLKPN--RGTFLSIILAHSL 613 (868)
Q Consensus 541 Li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~-g~~~~A~~l~~~m~~----~g~~p~--~~t~~~ll~a~~~ 613 (868)
.++.|.+.|+...|-+++.. +...|-.. |++++|++.|++..+ .| .|. ...+..+...+..
T Consensus 100 A~~~y~~~G~~~~aA~~~~~-----------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~ 167 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLKE-----------LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYAR 167 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHHH-----------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHH-----------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHH
Confidence 34455555555555444333 23444444 556666665555533 12 111 1233444455556
Q ss_pred cCChHHHHHHHHHhhhhcCCCC----Ch-hHHHHHHHhhhhcCChHHHHHHHHhC-CCCC----C--HHHHHHHHHHHHh
Q 047992 614 AGMVDLGKKVFCSITECYQIIP----MI-EHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP----D--SSIWEALLTACRI 681 (868)
Q Consensus 614 ~g~~~~a~~~~~~m~~~~~~~p----~~-~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p----~--~~~w~~ll~a~~~ 681 (868)
.|++++|.++|+.....+--.| +. .+|...+=++...|+...|.+.+++. ...| . ......|+.||..
T Consensus 168 l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~ 247 (282)
T PF14938_consen 168 LGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEE 247 (282)
T ss_dssp TT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHT
T ss_pred hCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHh
Confidence 6666666666665544321111 11 12222233344456666666666654 1111 1 2255556666643
Q ss_pred c--CCHHHHHHHHHHHhccCC
Q 047992 682 H--GNIDLAVLAIERLFDLEP 700 (868)
Q Consensus 682 ~--~~~~~a~~~~~~~~~l~p 700 (868)
. ..++.+..-++++-.+||
T Consensus 248 ~D~e~f~~av~~~d~~~~ld~ 268 (282)
T PF14938_consen 248 GDVEAFTEAVAEYDSISRLDN 268 (282)
T ss_dssp T-CCCHHHHCHHHTTSS---H
T ss_pred CCHHHHHHHHHHHcccCccHH
Confidence 2 345555555555555554
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0026 Score=52.19 Aligned_cols=80 Identities=15% Similarity=0.249 Sum_probs=43.5
Q ss_pred cCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCC-hhHHHHHHHhhhhcCChHHH
Q 047992 579 HGFWHAALDLFDQMKSFGL-KPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPM-IEHYSAMIDLYGRSGKLEEA 656 (868)
Q Consensus 579 ~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lvd~l~r~g~~~eA 656 (868)
.|++++|+.+|+++.+... .|+...+..+..++.+.|+.++|..+++. . ...|. ......+..++...|+++||
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 5677777777777776322 11334444456666677777777777765 1 12222 12222335666666666666
Q ss_pred HHHHHh
Q 047992 657 MEFIED 662 (868)
Q Consensus 657 ~~~i~~ 662 (868)
++.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 666654
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0059 Score=51.18 Aligned_cols=78 Identities=14% Similarity=0.206 Sum_probs=62.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCC-CCCeeeHHHHHHHHHhcC--------ChhHHHHHHHHHHhCCccCCcccHH
Q 047992 262 NILIRSYNQLGQCDVAMEMVKRMESLGI-TPDVFTWTCMISGFAQNG--------RTSQALDLFKEMSFVGVMPNGVTIT 332 (868)
Q Consensus 262 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g--------~~~~A~~l~~~m~~~g~~pd~~t~~ 332 (868)
...|..+...+++...-.+|+.+.+.|+ -|++.+|+.++.+.++.. +.-+.+.+|+.|...+++|+..||+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4455666666999999999999999999 889999999998888753 2446778888888888889888888
Q ss_pred HHHHHHh
Q 047992 333 SAISACT 339 (868)
Q Consensus 333 ~ll~a~~ 339 (868)
.++..+.
T Consensus 109 ivl~~Ll 115 (120)
T PF08579_consen 109 IVLGSLL 115 (120)
T ss_pred HHHHHHH
Confidence 8887654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.02 Score=64.32 Aligned_cols=81 Identities=15% Similarity=0.151 Sum_probs=55.5
Q ss_pred hHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhc--------CCHHHHHHHHHHHhcc--CCCCchhHHHHHHHHhhcCCCh
Q 047992 653 LEEAMEFIEDM-PIEPDSS-IWEALLTACRIH--------GNIDLAVLAIERLFDL--EPGDVLIQRLILQIYAICGKPE 720 (868)
Q Consensus 653 ~~eA~~~i~~~-~~~p~~~-~w~~ll~a~~~~--------~~~~~a~~~~~~~~~l--~p~~~~~~~~l~~~y~~~g~~~ 720 (868)
++.|.++++++ ...||.. .|..+..++... .+++.+.+.++++..+ +|.++..|..++-++...|+++
T Consensus 358 ~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~ 437 (517)
T PRK10153 358 LNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTD 437 (517)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHH
Confidence 55677777666 5566644 444433332211 2356677777777664 8888889999999999999999
Q ss_pred hHHHHHHHHHhcC
Q 047992 721 DALKVRKLERENT 733 (868)
Q Consensus 721 ~a~~~~~~m~~~~ 733 (868)
+|....+...+..
T Consensus 438 ~A~~~l~rAl~L~ 450 (517)
T PRK10153 438 EAYQAINKAIDLE 450 (517)
T ss_pred HHHHHHHHHHHcC
Confidence 9999877665554
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0047 Score=65.57 Aligned_cols=100 Identities=12% Similarity=-0.066 Sum_probs=73.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchh---HHHHHHHHhhcCCChhHHHHHHHHHhcCCCCCCcccEEE
Q 047992 668 DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLI---QRLILQIYAICGKPEDALKVRKLERENTRRNSFGQCWIE 744 (868)
Q Consensus 668 ~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~---~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~g~s~i~ 744 (868)
+...|..+..++...|+++.|...++++++++|+++.+ |..++..|+..|+.++|....+...+.+ .|-.+++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels---n~~f~~i~ 150 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY---NLKFSTIL 150 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc---chhHHHHH
Confidence 45599999999999999999999999999999999855 9999999999999999999655544331 22233222
Q ss_pred EcCEEEEEEeCCCCCCchHHHHHHHHhCCC
Q 047992 745 VKNLVYTFVTGGWSESYSDLLYSWLQNVPE 774 (868)
Q Consensus 745 ~~~~~~~f~~~d~~hp~~~~i~~~l~~~g~ 774 (868)
-+..+-.| +..|..+++.+.+.+.|-
T Consensus 151 ~DpdL~pl----R~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 151 NDPDLAPF----RASPEFKELQEEARKGGE 176 (453)
T ss_pred hCcchhhh----cccHHHHHHHHHHHHhCC
Confidence 22222111 356778888887776664
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0044 Score=49.14 Aligned_cols=66 Identities=26% Similarity=0.424 Sum_probs=54.8
Q ss_pred HhhhhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHH
Q 047992 645 DLYGRSGKLEEAMEFIEDM-PIEPDSS-IWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLIL 710 (868)
Q Consensus 645 d~l~r~g~~~eA~~~i~~~-~~~p~~~-~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~ 710 (868)
.+|.+.+++++|.+.++.+ ...|+.. .|......+...|+++.|...++++++.+|+++....+..
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 4677899999999999988 5556544 7778888889999999999999999999998877665543
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.53 Score=52.09 Aligned_cols=130 Identities=15% Similarity=0.228 Sum_probs=68.8
Q ss_pred HHHHHHcCChHHHHHHHhhcCCC-----ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCccChhhHHHHHHHHHhcCC
Q 047992 199 LAVYVKCGKLIWARRFFESMDEK-----DGVAWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQLGQ 273 (868)
Q Consensus 199 i~~y~~~g~~~~A~~~f~~~~~~-----d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~ 273 (868)
|.++.+.|++-...+++..-... -...|+.+...++....|++|.+.|..-.. -...+..+.+..+
T Consensus 767 ielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~~ecly~le~ 837 (1189)
T KOG2041|consen 767 IELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQIECLYRLEL 837 (1189)
T ss_pred HHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhHHHHHHHHHh
Confidence 44555555555555544432211 123566666666666666666665544321 1123334444444
Q ss_pred hHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcccHHHHHHHHhchhhHHHHHHHH
Q 047992 274 CDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIH 351 (868)
Q Consensus 274 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~ 351 (868)
+++-+.+-..+++ |....-.|...+.+.|..++|.+.|-+-. . | ...+..|..++++.+|.++-
T Consensus 838 f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~Lr~s---~-p-----kaAv~tCv~LnQW~~avela 901 (1189)
T KOG2041|consen 838 FGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAYLRRS---L-P-----KAAVHTCVELNQWGEAVELA 901 (1189)
T ss_pred hhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHHHhcc---C-c-----HHHHHHHHHHHHHHHHHHHH
Confidence 4444444333333 56666777777888888888877765432 1 1 23556677777776665553
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.61 E-value=1.2 Score=46.77 Aligned_cols=111 Identities=15% Similarity=0.133 Sum_probs=88.6
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCeeehhhHHHHHHhcCC
Q 047992 365 VGNSLINMYSKCEELEAAERVFDMIKDKDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNVLISGYIQNGN 444 (868)
Q Consensus 365 ~~~~li~~y~~~g~~~~A~~vf~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~ 444 (868)
..+..|.-+...|+...|.++-....-|+-.-|-..+.+++..+++++-..+-.. +-++..|-..+..|.+.|+
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 3444566667789999999999998888888999999999999999877765432 2356889999999999999
Q ss_pred HHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhh
Q 047992 445 EDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQ 492 (868)
Q Consensus 445 ~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 492 (868)
..+|..+...+. +..-+..|.+.|++.+|.+.-.+..
T Consensus 253 ~~eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 253 KKEASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred HHHHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 999999888752 3567888999999999887765543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.53 E-value=2 Score=48.46 Aligned_cols=105 Identities=16% Similarity=0.176 Sum_probs=73.7
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHH
Q 047992 542 IDTYAKSGNIVYSRTIFDGMSSKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGK 621 (868)
Q Consensus 542 i~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 621 (868)
+.-+...|+...|.++-.+..-||-..|=--+.+++..+++++-.++-+.+. + .+-|.....+|.+.|..+||.
T Consensus 691 v~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk-----s-PIGy~PFVe~c~~~~n~~EA~ 764 (829)
T KOG2280|consen 691 VTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK-----S-PIGYLPFVEACLKQGNKDEAK 764 (829)
T ss_pred HHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC-----C-CCCchhHHHHHHhcccHHHHh
Confidence 3344566888888888888777777777777778888888877666554432 1 456667777888888888888
Q ss_pred HHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHh
Q 047992 622 KVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIED 662 (868)
Q Consensus 622 ~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~ 662 (868)
+|+..... +.-.+++|.+.|.+.||.++--+
T Consensus 765 KYiprv~~----------l~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 765 KYIPRVGG----------LQEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred hhhhccCC----------hHHHHHHHHHhccHHHHHHHHHH
Confidence 88775433 22467778888888888776544
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.019 Score=50.18 Aligned_cols=83 Identities=19% Similarity=0.223 Sum_probs=64.6
Q ss_pred HHhhhhcCChHHHHHHHHhC---CCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC---CchhHHHHHHHHhh
Q 047992 644 IDLYGRSGKLEEAMEFIEDM---PIE-PD-SSIWEALLTACRIHGNIDLAVLAIERLFDLEPG---DVLIQRLILQIYAI 715 (868)
Q Consensus 644 vd~l~r~g~~~eA~~~i~~~---~~~-p~-~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~---~~~~~~~l~~~y~~ 715 (868)
..++-..|+.++|+.++++. ... ++ ...+-.+.++++..|+++.|..++++.++-.|+ +....+.++-.+..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 34455677888888888876 111 21 226667888899999999999999999998888 77888888999999
Q ss_pred cCCChhHHHHH
Q 047992 716 CGKPEDALKVR 726 (868)
Q Consensus 716 ~g~~~~a~~~~ 726 (868)
.|+++||.+..
T Consensus 88 ~gr~~eAl~~~ 98 (120)
T PF12688_consen 88 LGRPKEALEWL 98 (120)
T ss_pred CCCHHHHHHHH
Confidence 99999998853
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.011 Score=56.18 Aligned_cols=105 Identities=14% Similarity=0.286 Sum_probs=77.7
Q ss_pred ccChhhHHHHHHHHHh-----cCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcc
Q 047992 255 KLGVVTFNILIRSYNQ-----LGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGV 329 (868)
Q Consensus 255 ~p~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 329 (868)
..+..+|..+++.|.+ .|.++=....+..|.+.|+..|..+|+.|++.+=+ |.+- |. .
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p~-n 106 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------PR-N 106 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------cc-c
Confidence 4566777777777764 47788888889999999999999999999988754 2211 11 1
Q ss_pred cHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHcCCC
Q 047992 330 TITSAISACTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEE 378 (868)
Q Consensus 330 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~ 378 (868)
.+-++... -..+-+-|.+++++|...|+.||..++..|++.+++.+.
T Consensus 107 ~fQ~~F~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 107 FFQAEFMH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHhcc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 11112111 234567789999999999999999999999999987765
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.064 Score=57.79 Aligned_cols=124 Identities=9% Similarity=0.088 Sum_probs=88.0
Q ss_pred CCccChhhHHHHHHHHHhcCChHHHHHHHHHHHhc--CCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCccc
Q 047992 253 EIKLGVVTFNILIRSYNQLGQCDVAMEMVKRMESL--GITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVT 330 (868)
Q Consensus 253 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t 330 (868)
+.+.+......+++.+....+++++..++-+.... ....-..|..++|..|.+.|..++++++++.=...|+-||.+|
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 44556667777888888888888888888877664 2222334556888888888888888888887777888888888
Q ss_pred HHHHHHHHhchhhHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHcC
Q 047992 331 ITSAISACTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKC 376 (868)
Q Consensus 331 ~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~ 376 (868)
++.++..+.+.|++..|.++...|...+...+..++..-+..+.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888777777776555554444434333333
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.44 Score=52.25 Aligned_cols=71 Identities=18% Similarity=0.204 Sum_probs=41.4
Q ss_pred hHHHHHHHhhCCCChHHHHHH--HHHHHHhCCCCCcchHHHHHHHHHHcCChHHHHHHHhhcCCCChhhHHHHHHHHHhc
Q 047992 159 LFPKILQACGNCGDFEAGKLM--HSLVIKLGMSCVRRVRNSVLAVYVKCGKLIWARRFFESMDEKDGVAWNSMISGYFQI 236 (868)
Q Consensus 159 t~~~ll~~~~~~~~~~~a~~~--~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~ 236 (868)
.|...=++|.+.++..--+.+ +..+.+.|-.|+... +...++-.|.+.+|.++|. ++
T Consensus 600 ~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk------------------~~ 658 (1081)
T KOG1538|consen 600 DFETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFK------------------RS 658 (1081)
T ss_pred hhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHH------------------Hc
Confidence 344445556555554433333 334555665566543 3344566778888887775 45
Q ss_pred CChhHHHHHHHHHH
Q 047992 237 GENDEAHRLFDKMC 250 (868)
Q Consensus 237 g~~~~A~~l~~~m~ 250 (868)
|....|+++|..|+
T Consensus 659 G~enRAlEmyTDlR 672 (1081)
T KOG1538|consen 659 GHENRALEMYTDLR 672 (1081)
T ss_pred CchhhHHHHHHHHH
Confidence 66667777777665
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.016 Score=58.71 Aligned_cols=91 Identities=14% Similarity=0.113 Sum_probs=39.2
Q ss_pred hccCChHHHHHHHHHhhhhcCCCCC-hhHHHHHHHhhhhcCChHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCH
Q 047992 612 SLAGMVDLGKKVFCSITECYQIIPM-IEHYSAMIDLYGRSGKLEEAMEFIEDM----PIEPD-SSIWEALLTACRIHGNI 685 (868)
Q Consensus 612 ~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lvd~l~r~g~~~eA~~~i~~~----~~~p~-~~~w~~ll~a~~~~~~~ 685 (868)
...|++++|...|+.+.+.|.-.+- ...+-.+..+|...|++++|...|+++ |..|. ...|-.+...+...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 3345555555555555554433221 122334444444555555555444444 11111 11333333334444555
Q ss_pred HHHHHHHHHHhccCCCC
Q 047992 686 DLAVLAIERLFDLEPGD 702 (868)
Q Consensus 686 ~~a~~~~~~~~~l~p~~ 702 (868)
+.|...++++++..|++
T Consensus 234 ~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 234 AKAKAVYQQVIKKYPGT 250 (263)
T ss_pred HHHHHHHHHHHHHCcCC
Confidence 55555555555555543
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.13 Score=51.71 Aligned_cols=171 Identities=15% Similarity=0.091 Sum_probs=95.2
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCCCCce---e---cHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHh
Q 047992 540 SLIDTYAKSGNIVYSRTIFDGMSSKDII---T---WNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR--GTFLSIILAH 611 (868)
Q Consensus 540 ~Li~~y~k~g~~~~A~~~f~~~~~~d~~---~---~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~ 611 (868)
.....+.+.|++++|.+.|+.+....+. . .-.++.+|-+.|++++|+..|++..+ ..|++ +.+...+.+.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~--~~P~~~~~~~a~Y~~g~ 114 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR--LNPTHPNIDYVLYMRGL 114 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCcCCCchHHHHHHHHH
Confidence 3444455667777777777766532221 1 12234555666777777777777766 34443 3444444333
Q ss_pred hc--cC---------------C---hHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhCCCCCCHHH
Q 047992 612 SL--AG---------------M---VDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPIEPDSSI 671 (868)
Q Consensus 612 ~~--~g---------------~---~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~~~~p~~~~ 671 (868)
++ .+ + ..+|...|+.+++.| -.+.-.++|...+..+. +...
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y----------------P~S~ya~~A~~rl~~l~---~~la 175 (243)
T PRK10866 115 TNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY----------------PNSQYTTDATKRLVFLK---DRLA 175 (243)
T ss_pred hhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC----------------cCChhHHHHHHHHHHHH---HHHH
Confidence 32 00 1 122333333333332 22222333333333220 0000
Q ss_pred HH--HHHHHHHhcCCHHHHHHHHHHHhccCCCCc---hhHHHHHHHHhhcCCChhHHHHHHHHHh
Q 047992 672 WE--ALLTACRIHGNIDLAVLAIERLFDLEPGDV---LIQRLILQIYAICGKPEDALKVRKLERE 731 (868)
Q Consensus 672 w~--~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~---~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 731 (868)
-. ....-|.+.|++.-|..-++.+++--|+.+ .+...|.+.|...|..++|.++++.+..
T Consensus 176 ~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 176 KYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 00 122235677899999999999999888654 5667889999999999999998877643
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.41 Score=50.59 Aligned_cols=32 Identities=31% Similarity=0.442 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 047992 671 IWEALLTACRIHGNIDLAVLAIERLFDLEPGD 702 (868)
Q Consensus 671 ~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~ 702 (868)
...+++.++...||.+.|.+++++++.+.|..
T Consensus 307 d~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 307 DVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 45789999999999999999999999998764
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.071 Score=54.13 Aligned_cols=91 Identities=19% Similarity=0.078 Sum_probs=55.9
Q ss_pred HHHHHHhhhhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC---chhHHHHHH
Q 047992 640 YSAMIDLYGRSGKLEEAMEFIEDM-PIEPDS----SIWEALLTACRIHGNIDLAVLAIERLFDLEPGD---VLIQRLILQ 711 (868)
Q Consensus 640 y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~~----~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~---~~~~~~l~~ 711 (868)
|..-++++.+.|++++|...|+.. ...|+. .++-.|..++...|+++.|...++++++..|++ +.++..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 444455555567777777666665 222322 245556666677777777777777777666654 344455577
Q ss_pred HHhhcCCChhHHHHHHHHH
Q 047992 712 IYAICGKPEDALKVRKLER 730 (868)
Q Consensus 712 ~y~~~g~~~~a~~~~~~m~ 730 (868)
+|...|++++|.++.+...
T Consensus 226 ~~~~~g~~~~A~~~~~~vi 244 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVI 244 (263)
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 7777777777777665543
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.32 Score=48.98 Aligned_cols=167 Identities=13% Similarity=0.042 Sum_probs=104.1
Q ss_pred HHHhchhchHHHHHHHHHHHHhCCCCChhHH---HHHHHHHHhcCCHHHHHHHHhcCCCC----CceecHHHHHHHHh--
Q 047992 508 PACAYLVASNKVKEIHGCVLRRSLESSLPVM---NSLIDTYAKSGNIVYSRTIFDGMSSK----DIITWNSLICGYVL-- 578 (868)
Q Consensus 508 ~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~Li~~y~k~g~~~~A~~~f~~~~~~----d~~~~~~li~~~~~-- 578 (868)
..+...|+++.|.+.+..++..-.. +.... -.++..|.+.|++++|...|++.... .-+.|-....|.+.
T Consensus 40 ~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~ 118 (243)
T PRK10866 40 QQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMA 118 (243)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhh
Confidence 3445679999999999999884322 23332 45678899999999999999977532 22344444444432
Q ss_pred cC---------------C---hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHH
Q 047992 579 HG---------------F---WHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHY 640 (868)
Q Consensus 579 ~g---------------~---~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y 640 (868)
.+ + ..+|++.|+++++ --||. .-.++|......+... -.+|-
T Consensus 119 ~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~--~yP~S-------------~ya~~A~~rl~~l~~~-----la~~e 178 (243)
T PRK10866 119 LDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR--GYPNS-------------QYTTDATKRLVFLKDR-----LAKYE 178 (243)
T ss_pred cchhhhhhccCCCccccCHHHHHHHHHHHHHHHH--HCcCC-------------hhHHHHHHHHHHHHHH-----HHHHH
Confidence 11 1 2467777777777 45653 2345555544444331 11233
Q ss_pred HHHHHhhhhcCChHHHHHHHHhC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047992 641 SAMIDLYGRSGKLEEAMEFIEDM----PIEPDS-SIWEALLTACRIHGNIDLAVLAIERL 695 (868)
Q Consensus 641 ~~lvd~l~r~g~~~eA~~~i~~~----~~~p~~-~~w~~ll~a~~~~~~~~~a~~~~~~~ 695 (868)
-.+...|.+.|.+.-|..-++.+ |..|.. .....+..++...|..++|......+
T Consensus 179 ~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 179 LSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 45567788888887776665555 444432 35666778888888888888776554
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.24 E-value=1.8 Score=44.88 Aligned_cols=215 Identities=15% Similarity=0.107 Sum_probs=136.0
Q ss_pred HhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCC-CCCCHH--hHHHHHHHHhc---h
Q 047992 440 IQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSC-FYPNCV--TILSVLPACAY---L 513 (868)
Q Consensus 440 ~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~--t~~~ll~a~~~---~ 513 (868)
.+.|..+.|..+-+..-... +.-...+.+.+...+..|+++.|+++.+.-.... +.++.. .-..+|.+-+. -
T Consensus 165 qr~GareaAr~yAe~Aa~~A--p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ld 242 (531)
T COG3898 165 QRLGAREAARHYAERAAEKA--PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLD 242 (531)
T ss_pred HhcccHHHHHHHHHHHHhhc--cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhc
Confidence 45677777777666654432 3344567777788888888888888877654322 344432 22233333221 1
Q ss_pred hchHHHHHHHHHHHHhCCCCChhH-HHHHHHHHHhcCCHHHHHHHHhcCCCCCceecHHHHHHHHhcCChHHHHHHHHHH
Q 047992 514 VASNKVKEIHGCVLRRSLESSLPV-MNSLIDTYAKSGNIVYSRTIFDGMSSKDIITWNSLICGYVLHGFWHAALDLFDQM 592 (868)
Q Consensus 514 ~~~~~~~~i~~~~~~~~~~~~~~~-~~~Li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m 592 (868)
.+...++..-....| +.||..- ...-...|.+.|++.++-.+++.+=+.++..= +...|....-++.++.-+++.
T Consensus 243 adp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--ia~lY~~ar~gdta~dRlkRa 318 (531)
T COG3898 243 ADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--IALLYVRARSGDTALDRLKRA 318 (531)
T ss_pred CChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--HHHHHHHhcCCCcHHHHHHHH
Confidence 234455555555555 5665432 23345678899999999999998753322211 223444444445555555554
Q ss_pred HH-CCCCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhc-CChHHHHHHHHhC
Q 047992 593 KS-FGLKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRS-GKLEEAMEFIEDM 663 (868)
Q Consensus 593 ~~-~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~-g~~~eA~~~i~~~ 663 (868)
.. ..++||+ .+...+..+-...|.+..|+.--+... ...|....|..|.|.-... |+-.++...+-+.
T Consensus 319 ~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 319 KKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 33 2388887 677778888888999988887666554 4789999999999987654 8889999988876
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.18 E-value=1.5 Score=43.35 Aligned_cols=191 Identities=18% Similarity=0.178 Sum_probs=136.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCC-----CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047992 535 LPVMNSLIDTYAKSGNIVYSRTIFDGMS-----SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIIL 609 (868)
Q Consensus 535 ~~~~~~Li~~y~k~g~~~~A~~~f~~~~-----~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 609 (868)
..........+...+.+..+...+.... ......+..+...+...+...++++.+.........+.. .......
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDL-AEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcch-HHHHHHH
Confidence 4666777788888888888888877653 334455666667777788888888888888874333322 2222222
Q ss_pred -HhhccCChHHHHHHHHHhhhhcCCCC----ChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCC--HHHHHHHHHHHHh
Q 047992 610 -AHSLAGMVDLGKKVFCSITECYQIIP----MIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPD--SSIWEALLTACRI 681 (868)
Q Consensus 610 -a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~--~~~w~~ll~a~~~ 681 (868)
++...|..+++...|..... ..| ....+......+...|+.++|...+.+. ...|+ ...+..+...+..
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 138 GALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH
Confidence 67888999999999888743 333 2333334444466778899999888887 34444 5678888888888
Q ss_pred cCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHH
Q 047992 682 HGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLE 729 (868)
Q Consensus 682 ~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 729 (868)
.++.+.|...+.++++..|.....+..++.++...|.++++.......
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKA 262 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHH
Confidence 889999999999999999987777888888888777788888765544
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.095 Score=54.20 Aligned_cols=125 Identities=13% Similarity=0.134 Sum_probs=51.8
Q ss_pred hhhhHHHHHhcCChhHHHHHHHHhhcCCC-CCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 047992 468 WNSLIAGYQQLGQKNNALGVFRKMQSSCF-YPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYA 546 (868)
Q Consensus 468 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~ 546 (868)
|-.++...-+.+..+.|..+|.+....+. ..+.....+.+. +...++.+.|..|++..++. +..+...+...++++.
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH
Confidence 44444555555555555555555543211 111111111111 11123334455555555443 3344444555555555
Q ss_pred hcCCHHHHHHHHhcCCCC------CceecHHHHHHHHhcCChHHHHHHHHHHHH
Q 047992 547 KSGNIVYSRTIFDGMSSK------DIITWNSLICGYVLHGFWHAALDLFDQMKS 594 (868)
Q Consensus 547 k~g~~~~A~~~f~~~~~~------d~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 594 (868)
+.|+.+.|+.+|++.... -...|...+.--.++|+.+.+.++.+++.+
T Consensus 82 ~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 82 KLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555543321 112444444444445555555555544444
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.4 Score=44.25 Aligned_cols=128 Identities=15% Similarity=0.093 Sum_probs=78.8
Q ss_pred CCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCC-ChhHHHHHHHhhhhcCChHHHHHHHHhC----C--CCCCHH
Q 047992 598 KPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIP-MIEHYSAMIDLYGRSGKLEEAMEFIEDM----P--IEPDSS 670 (868)
Q Consensus 598 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lvd~l~r~g~~~eA~~~i~~~----~--~~p~~~ 670 (868)
.|....-..+..+....|+..||...|.+... |+-. +....-.+.......++..+|...+++. | -.||..
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 44444444555555555555555555554443 2221 2222333344444455666666655554 1 234543
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHH
Q 047992 671 IWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLER 730 (868)
Q Consensus 671 ~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 730 (868)
. .+...+...|..+.|+.+++.++.-.|+ +..-...+.+++++|+.+++..-...+-
T Consensus 164 L--l~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 164 L--LFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred H--HHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 2 3556677889999999999999999984 6777888999999999998877554443
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.06 E-value=3.2 Score=45.95 Aligned_cols=183 Identities=18% Similarity=0.136 Sum_probs=130.6
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhcCCCC---CceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047992 534 SLPVMNSLIDTYAKSGNIVYSRTIFDGMSSK---DIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILA 610 (868)
Q Consensus 534 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 610 (868)
+...|...++.-.+.|+.+...-.|++..-| =...|--++.-....|+.+-|-.++....+--++-...+-..-..-
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 4567888888889999999999999987643 2234555555555558888887777766664333333443333445
Q ss_pred hhccCChHHHHHHHHHhhhhcCCCCCh-hHHHHHHHhhhhcCChHHHH---HHHHhC-CCCCCHHHHHHHHHH-----HH
Q 047992 611 HSLAGMVDLGKKVFCSITECYQIIPMI-EHYSAMIDLYGRSGKLEEAM---EFIEDM-PIEPDSSIWEALLTA-----CR 680 (868)
Q Consensus 611 ~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~y~~lvd~l~r~g~~~eA~---~~i~~~-~~~p~~~~w~~ll~a-----~~ 680 (868)
+.+.|+.+.|..+++.+.+++ |+. +.-.--+....|.|.++.+. +++... +..-+..+...+.-- +.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 788999999999999999876 553 33334456778999999988 666654 444444443333322 34
Q ss_pred hcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCC
Q 047992 681 IHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKP 719 (868)
Q Consensus 681 ~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~ 719 (868)
+.++.+.|..+..++.+..|++-..|..+.++-...+.-
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~ 491 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPDCKVLYLELIRFELIQPSG 491 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCcc
Confidence 678999999999999999999999999999987777633
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.36 Score=51.85 Aligned_cols=161 Identities=12% Similarity=0.134 Sum_probs=97.6
Q ss_pred CCCCc---eec--HHHHHHHHhcC-----ChHHHHHHHHHHH-HCCCCCCHHHHHHHHHHhhc----------cCChHHH
Q 047992 562 SSKDI---ITW--NSLICGYVLHG-----FWHAALDLFDQMK-SFGLKPNRGTFLSIILAHSL----------AGMVDLG 620 (868)
Q Consensus 562 ~~~d~---~~~--~~li~~~~~~g-----~~~~A~~l~~~m~-~~g~~p~~~t~~~ll~a~~~----------~g~~~~a 620 (868)
++.+. ..| ..++.|...-- ..+.|+.+|.+.. .+.+.|+...-.+.+.-|-. .....+|
T Consensus 244 ~~~~l~~~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a 323 (458)
T PRK11906 244 AKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKA 323 (458)
T ss_pred CCCCcccccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Confidence 34455 567 66666655421 2467888999988 22378887544444443321 1223455
Q ss_pred HHHHHHhhhhcCCCC-ChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 047992 621 KKVFCSITECYQIIP-MIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPDSS-IWEALLTACRIHGNIDLAVLAIERLFD 697 (868)
Q Consensus 621 ~~~~~~m~~~~~~~p-~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~~~-~w~~ll~a~~~~~~~~~a~~~~~~~~~ 697 (868)
.+.-+...+ +.| |......+.-+++-.|+++.|..+|++. ...||.. +|......+...|+.+.|.+.++++++
T Consensus 324 ~~~A~rAve---ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 324 LELLDYVSD---ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred HHHHHHHHh---cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 555555444 222 3344555566666677788888888877 5667655 666666667778888888888888888
Q ss_pred cCCCCchhHHHHHHH--HhhcCCChhHHHHH
Q 047992 698 LEPGDVLIQRLILQI--YAICGKPEDALKVR 726 (868)
Q Consensus 698 l~p~~~~~~~~l~~~--y~~~g~~~~a~~~~ 726 (868)
++|...++-++--++ |... ..++|.+++
T Consensus 401 LsP~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 430 (458)
T PRK11906 401 LEPRRRKAVVIKECVDMYVPN-PLKNNIKLY 430 (458)
T ss_pred cCchhhHHHHHHHHHHHHcCC-chhhhHHHH
Confidence 888766655544443 4443 355565554
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.94 E-value=4.1 Score=46.18 Aligned_cols=328 Identities=13% Similarity=0.120 Sum_probs=174.2
Q ss_pred HHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHhhCCCC---hHHHHHHHHHHHHhCCCCCcchHHHHHHHH
Q 047992 126 SAMIGAYSRDQRWREVVELFFLMVQDGLFPDDFLFPKILQACGNCGD---FEAGKLMHSLVIKLGMSCVRRVRNSVLAVY 202 (868)
Q Consensus 126 ~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~---~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 202 (868)
..+|.-+...+.+..|+++-..|...-.+- ...|....+...+..+ -+.+..+-..+... . .+...+..+..-.
T Consensus 441 ~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~-~-~~~iSy~~iA~~A 517 (829)
T KOG2280|consen 441 EVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK-L-TPGISYAAIARRA 517 (829)
T ss_pred hhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc-C-CCceeHHHHHHHH
Confidence 345555666666666666655553211111 3344444443333321 22222222222111 1 2334455555556
Q ss_pred HHcCChHHHHHHHhhcCCC--------ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCccChhhHHHHHHHHHhcCCh
Q 047992 203 VKCGKLIWARRFFESMDEK--------DGVAWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQLGQC 274 (868)
Q Consensus 203 ~~~g~~~~A~~~f~~~~~~--------d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 274 (868)
..+|+.+-|+++.+.=+.. +..-+...+.-..+.|+.+-...++-.|... .+...+... ..+.
T Consensus 518 y~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l~~~------l~~~ 588 (829)
T KOG2280|consen 518 YQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSLFMT------LRNQ 588 (829)
T ss_pred HhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHHHHH------HHhc
Confidence 6677777777777654432 2223455566666677777776666666542 111111111 1233
Q ss_pred HHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHH-H-----HhCCccCCcccHHHHHHHHhchhhHHHHH
Q 047992 275 DVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKE-M-----SFVGVMPNGVTITSAISACTDLKALAMGM 348 (868)
Q Consensus 275 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~-m-----~~~g~~pd~~t~~~ll~a~~~~~~~~~a~ 348 (868)
..|..++....+.. |. .. +..+.+.++-.+++..|.. - ...|..|+ .....++|++........
T Consensus 589 p~a~~lY~~~~r~~---~~---~~-l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ 658 (829)
T KOG2280|consen 589 PLALSLYRQFMRHQ---DR---AT-LYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEA 658 (829)
T ss_pred hhhhHHHHHHHHhh---ch---hh-hhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHH
Confidence 44555555443321 00 01 1112222222222222211 0 01233333 333445555544422211
Q ss_pred HHHH----------HHH-HhCCCCCccHHHHHHHHHHcCCCHHHHHHHHHhcCCCCeehHHHHHHHHHhcCChhHHHHHH
Q 047992 349 EIHS----------LAV-KMGFTDDVLVGNSLINMYSKCEELEAAERVFDMIKDKDVYSWNSMIAGYCQAGYCGKAYELF 417 (868)
Q Consensus 349 ~i~~----------~~~-~~g~~~~~~~~~~li~~y~~~g~~~~A~~vf~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 417 (868)
+..+ .+. +.|.....-+.+--+.-+..-|+...|.++-...+-+|-..|---+.+++..+++++-.++-
T Consensus 659 ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfA 738 (829)
T KOG2280|consen 659 KALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFA 738 (829)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHH
Confidence 1111 111 11222233344455556677889999999999888888888888889999999998877776
Q ss_pred HHhHhCCCCCCeeehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHh
Q 047992 418 IKMQESDVPPNVITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKM 491 (868)
Q Consensus 418 ~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 491 (868)
+.+. ++.-|.-.+..|.+.|+.++|.+++.+... . .-...+|.+.|++.+|.++--+-
T Consensus 739 kskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~------l----~ekv~ay~~~~~~~eAad~A~~~ 796 (829)
T KOG2280|consen 739 KSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG------L----QEKVKAYLRVGDVKEAADLAAEH 796 (829)
T ss_pred hccC------CCCCchhHHHHHHhcccHHHHhhhhhccCC------h----HHHHHHHHHhccHHHHHHHHHHh
Confidence 6655 467788888999999999999999887732 1 15678888888888887765443
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.93 E-value=1.6 Score=45.80 Aligned_cols=165 Identities=11% Similarity=0.038 Sum_probs=104.9
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCC-------CceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhc
Q 047992 542 IDTYAKSGNIVYSRTIFDGMSSK-------DIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR-GTFLSIILAHSL 613 (868)
Q Consensus 542 i~~y~k~g~~~~A~~~f~~~~~~-------d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~ 613 (868)
.+...|.|++..|.+.+.....- ++..|-.......+.|+.++|+.-.++... +.|.- -.+..-..++.-
T Consensus 256 gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c~l~ 333 (486)
T KOG0550|consen 256 GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRANCHLA 333 (486)
T ss_pred hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHHHHH
Confidence 45667889999999998876532 333455556677789999999999888876 55443 223333345566
Q ss_pred cCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047992 614 AGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPIEPDSSIWEALLTACRIHGNIDLAVLAIE 693 (868)
Q Consensus 614 ~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~ 693 (868)
.+.+++|.+.|+...+. ..+.++-. .+.+|..-+++..- .-|-.+|+.-+...+.+.......
T Consensus 334 le~~e~AV~d~~~a~q~---~~s~e~r~----------~l~~A~~aLkkSkR----kd~ykilGi~~~as~~eikkayrk 396 (486)
T KOG0550|consen 334 LEKWEEAVEDYEKAMQL---EKDCEIRR----------TLREAQLALKKSKR----KDWYKILGISRNASDDEIKKAYRK 396 (486)
T ss_pred HHHHHHHHHHHHHHHhh---ccccchHH----------HHHHHHHHHHHhhh----hhHHHHhhhhhhcccchhhhHHHH
Confidence 78899999999887652 22222222 23445555554322 236667777777777777777777
Q ss_pred HHhccCCCCc-hh-------HHHHHHHHhhcCCChhHHHH
Q 047992 694 RLFDLEPGDV-LI-------QRLILQIYAICGKPEDALKV 725 (868)
Q Consensus 694 ~~~~l~p~~~-~~-------~~~l~~~y~~~g~~~~a~~~ 725 (868)
.++..-|+-. +. .--.++.|...++.++..+.
T Consensus 397 ~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~ 436 (486)
T KOG0550|consen 397 LALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRF 436 (486)
T ss_pred HHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhc
Confidence 7788777533 22 23456666666666666554
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.094 Score=48.29 Aligned_cols=108 Identities=20% Similarity=0.189 Sum_probs=71.1
Q ss_pred hhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 047992 611 HSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPIEPDSSIWEALLTACRIHGNIDLAVL 690 (868)
Q Consensus 611 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~~~~p~~~~w~~ll~a~~~~~~~~~a~~ 690 (868)
....|+.+.+...+..+..-|.-.+=.... -...+......++++- ..+...++..+...|+++.|..
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~--------~~~W~~~~r~~l~~~~----~~~~~~l~~~~~~~~~~~~a~~ 83 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLD--------DEEWVEPERERLRELY----LDALERLAEALLEAGDYEEALR 83 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGT--------TSTTHHHHHHHHHHHH----HHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCC--------ccHHHHHHHHHHHHHH----HHHHHHHHHHHHhccCHHHHHH
Confidence 345567777777777666655322211100 0233344444444431 2255667778889999999999
Q ss_pred HHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHH
Q 047992 691 AIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLER 730 (868)
Q Consensus 691 ~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 730 (868)
.+++++.++|-|...|..|..+|...|+..+|.++.+.++
T Consensus 84 ~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 84 LLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999765553
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.8 Score=44.78 Aligned_cols=186 Identities=12% Similarity=0.073 Sum_probs=116.8
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CCce--------ecHHHHHHHHhcCChHHHHHHH
Q 047992 520 KEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMSS--KDII--------TWNSLICGYVLHGFWHAALDLF 589 (868)
Q Consensus 520 ~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~d~~--------~~~~li~~~~~~g~~~~A~~l~ 589 (868)
+.+|..+.+. . ..-+++|...|.-..-+++-...|+.-.. ..+. .-+.++..+.-+|.+.-.+.++
T Consensus 125 R~lhAe~~~~--l--gnpqesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~ 200 (366)
T KOG2796|consen 125 RILHAELQQY--L--GNPQESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAY 200 (366)
T ss_pred HHHHHHHHHh--c--CCcHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHH
Confidence 4555555441 1 12245666666555555555555554332 2222 3355666666677888888999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcC----CCCChhHHHHHHHhhhhcCChHHHHHHHHhCCC
Q 047992 590 DQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQ----IIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPI 665 (868)
Q Consensus 590 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~----~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~~~ 665 (868)
++.++..-+-+.+....+.+.-.+.|+++.|..+|+...+..+ +.-..-..-.+..++.-+.++.+|...+.+.+.
T Consensus 201 ~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~ 280 (366)
T KOG2796|consen 201 HSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILR 280 (366)
T ss_pred HHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccc
Confidence 9999854444556677777888899999999999997765433 222232333344556667888899888888854
Q ss_pred C-CCHHHHHHHHHHH-HhcCCHHHHHHHHHHHhccCCCCchhHHHH
Q 047992 666 E-PDSSIWEALLTAC-RIHGNIDLAVLAIERLFDLEPGDVLIQRLI 709 (868)
Q Consensus 666 ~-p~~~~w~~ll~a~-~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l 709 (868)
. |...+...==..| .--|+...|.+..+.+++..|.....-.++
T Consensus 281 ~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~ 326 (366)
T KOG2796|consen 281 MDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVL 326 (366)
T ss_pred cCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHH
Confidence 3 3222322222223 346899999999999999999765444333
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.93 Score=44.36 Aligned_cols=137 Identities=9% Similarity=0.035 Sum_probs=85.3
Q ss_pred hhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHh-----CCCCChhHHHHHHH
Q 047992 469 NSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRR-----SLESSLPVMNSLID 543 (868)
Q Consensus 469 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~-----~~~~~~~~~~~Li~ 543 (868)
+.++..+.-.|.+.-.+..+++.++..-+-+..-...+.+.-.+.|+.+.++..++.+.+. ++..+..+..+...
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 3445555556666666677777666444445555555666666677777777777766553 23333444444445
Q ss_pred HHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 047992 544 TYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSI 607 (868)
Q Consensus 544 ~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 607 (868)
.|.-..+...|.+.|+++. +.|++.-|.-.-...-.|+..+|++..+.|.+ ..|...+-.++
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~~~l~es~ 325 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ--QDPRHYLHESV 325 (366)
T ss_pred heecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc--cCCccchhhhH
Confidence 5666677777777777655 34566666666666667888888888888877 55665554443
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=95.81 E-value=3 Score=43.72 Aligned_cols=110 Identities=12% Similarity=0.129 Sum_probs=84.1
Q ss_pred hHHHHHHHHHHcCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCccChhhHHHHHHHHHhcCC
Q 047992 194 VRNSVLAVYVKCGKLIWARRFFESMDEKDGVAWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQLGQ 273 (868)
Q Consensus 194 ~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~ 273 (868)
+.+..|.-+...|+...|.++..+..-+|..-|...|.+++..++|++-.++... +-++.-|..++..+.+.|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 4455566677788889999998888888888999999999999999877665322 2245778888888888888
Q ss_pred hHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHH
Q 047992 274 CDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEM 319 (868)
Q Consensus 274 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 319 (868)
..+|......+ .+..-+..|.+.|++.+|.+.-.+.
T Consensus 253 ~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 253 KKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 88888887763 2366778888888888887765443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.084 Score=45.41 Aligned_cols=89 Identities=15% Similarity=0.171 Sum_probs=69.8
Q ss_pred hhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc----hhHHHHHHHHhhcCCC
Q 047992 646 LYGRSGKLEEAMEFIEDM-P-IEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDV----LIQRLILQIYAICGKP 719 (868)
Q Consensus 646 ~l~r~g~~~eA~~~i~~~-~-~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~----~~~~~l~~~y~~~g~~ 719 (868)
++..+|++++|++.|.+. . .+.++.+|+.-..++|.+|+.+.|..-.++++++.-+.. .+|+.-+-+|-..|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 466788888888888876 2 234567888899999999999999999999999865432 4578888999999999
Q ss_pred hhHHHHHHHHHhcCC
Q 047992 720 EDALKVRKLERENTR 734 (868)
Q Consensus 720 ~~a~~~~~~m~~~~~ 734 (868)
++|..-.....+.|-
T Consensus 132 d~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 132 DAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHhHHHHHHhCC
Confidence 988887776665553
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.099 Score=46.21 Aligned_cols=53 Identities=19% Similarity=0.405 Sum_probs=38.8
Q ss_pred cCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcC
Q 047992 631 YQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM----PIEPDSSIWEALLTACRIHG 683 (868)
Q Consensus 631 ~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~----~~~p~~~~w~~ll~a~~~~~ 683 (868)
.+..|+.....+++..|+..|++..|.++++.. |++-+..+|..|+.-|...-
T Consensus 46 spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s 102 (126)
T PF12921_consen 46 SPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLS 102 (126)
T ss_pred CCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 355677778888888888888888888877655 55555778888887765543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.19 E-value=7.8 Score=44.64 Aligned_cols=174 Identities=11% Similarity=0.055 Sum_probs=89.8
Q ss_pred HHHHHHhcCChhHHHHHHhhcCCCCceeHHHHH---HHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHhhCCCCh
Q 047992 97 LLSVYAKCGCLDDAREVFEDMRERNLYTWSAMI---GAYSRDQRWREVVELFFLMVQDGLFPDDFLFPKILQACGNCGDF 173 (868)
Q Consensus 97 li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li---~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 173 (868)
-+.+..+...++.|..+-..-..+....-+.+. .-+-+.|++++|..-|-+-... +.| +.+++-+-.....
T Consensus 340 kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~I 413 (933)
T KOG2114|consen 340 KLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRI 413 (933)
T ss_pred HHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHH
Confidence 344555555555555554443222111111111 1233567777777777665422 222 2345544444444
Q ss_pred HHHHHHHHHHHHhCCCCCcchHHHHHHHHHHcCChHHHHHHHhhcCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 047992 174 EAGKLMHSLVIKLGMSCVRRVRNSVLAVYVKCGKLIWARRFFESMDEKDG-VAWNSMISGYFQIGENDEAHRLFDKMCRE 252 (868)
Q Consensus 174 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 252 (868)
..-...++.+.+.|+. +..--+.|++.|.+.++.+.-.++.+.-..-.. .-....+..+-+.+-.++|..+-.....
T Consensus 414 knLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~- 491 (933)
T KOG2114|consen 414 KNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKK- 491 (933)
T ss_pred HHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhcc-
Confidence 4444556666677763 333446688888888888777777766552211 1244555556666666666555444332
Q ss_pred CCccChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 047992 253 EIKLGVVTFNILIRSYNQLGQCDVAMEMVKRME 285 (868)
Q Consensus 253 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 285 (868)
..... --.+-..+++++|++.+..++
T Consensus 492 ----he~vl---~ille~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 492 ----HEWVL---DILLEDLHNYEEALRYISSLP 517 (933)
T ss_pred ----CHHHH---HHHHHHhcCHHHHHHHHhcCC
Confidence 11222 222334566777777776664
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.9 Score=44.46 Aligned_cols=47 Identities=13% Similarity=0.116 Sum_probs=35.6
Q ss_pred HHHhcCCHHHHHHHHHHHhccCCCCch---hHHHHHHHHhhcCCChhHHH
Q 047992 678 ACRIHGNIDLAVLAIERLFDLEPGDVL---IQRLILQIYAICGKPEDALK 724 (868)
Q Consensus 678 a~~~~~~~~~a~~~~~~~~~l~p~~~~---~~~~l~~~y~~~g~~~~a~~ 724 (868)
-+...|++.-|..-++.+++.-|+... +...|...|...|.-+.+..
T Consensus 150 ~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 150 FYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 466789999999999999999997653 45678888999998884443
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.06 Score=34.85 Aligned_cols=33 Identities=27% Similarity=0.429 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 047992 670 SIWEALLTACRIHGNIDLAVLAIERLFDLEPGD 702 (868)
Q Consensus 670 ~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~ 702 (868)
.+|..+...+...|+++.|+..++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 467888889999999999999999999999986
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.69 Score=42.09 Aligned_cols=68 Identities=15% Similarity=0.205 Sum_probs=43.9
Q ss_pred CHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhc-CChHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047992 600 NRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRS-GKLEEAMEFIEDMPIEPDSSIWEALLTA 678 (868)
Q Consensus 600 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~-g~~~eA~~~i~~~~~~p~~~~w~~ll~a 678 (868)
+......++..|...+.++++..++..+.. |...++.+... ++.+.|.+++.+. .++..|..++..
T Consensus 68 ~~yd~~~~~~~c~~~~l~~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~~---~~~~lw~~~~~~ 134 (140)
T smart00299 68 NHYDIEKVGKLCEKAKLYEEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVKQ---NNPELWAEVLKA 134 (140)
T ss_pred ccCCHHHHHHHHHHcCcHHHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHhC---CCHHHHHHHHHH
Confidence 344455567777777777777777766543 33445555444 7788888888762 356678777776
Q ss_pred HH
Q 047992 679 CR 680 (868)
Q Consensus 679 ~~ 680 (868)
|.
T Consensus 135 ~l 136 (140)
T smart00299 135 LL 136 (140)
T ss_pred HH
Confidence 64
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.044 Score=35.55 Aligned_cols=33 Identities=21% Similarity=0.289 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 047992 670 SIWEALLTACRIHGNIDLAVLAIERLFDLEPGD 702 (868)
Q Consensus 670 ~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~ 702 (868)
.+|..+..++...|+++.|+..++++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 478889999999999999999999999999974
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.035 Score=44.61 Aligned_cols=27 Identities=15% Similarity=0.115 Sum_probs=14.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 047992 671 IWEALLTACRIHGNIDLAVLAIERLFD 697 (868)
Q Consensus 671 ~w~~ll~a~~~~~~~~~a~~~~~~~~~ 697 (868)
++..+...+...|+++.|+..++++++
T Consensus 48 ~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 48 TLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 444455555555555555555555544
|
... |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=94.81 E-value=6.8 Score=41.83 Aligned_cols=459 Identities=11% Similarity=0.107 Sum_probs=221.1
Q ss_pred HHhcCChhHHHHHHhhcCCC---Cce------eHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHH--hhC
Q 047992 101 YAKCGCLDDAREVFEDMRER---NLY------TWSAMIGAYSRDQRWREVVELFFLMVQDGLFPDDFLFPKILQA--CGN 169 (868)
Q Consensus 101 ~~~~g~~~~A~~~f~~~~~~---~~~------~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~--~~~ 169 (868)
+-+.+++..|.++|.++-+. +.+ .-+.+|++|..++ .+.....+....+ ..| ...|..+..+ +-+
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~n-ld~Me~~l~~l~~--~~~-~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNN-LDLMEKQLMELRQ--QFG-KSAYLPLFKALVAYK 91 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhh-HHHHHHHHHHHHH--hcC-CchHHHHHHHHHHHH
Confidence 35678888899888887532 212 2345666666543 2222223333322 123 3445555555 245
Q ss_pred CCChHHHHHHHHHHHHh--CCCCCcchHHHHHHHHHHcCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 047992 170 CGDFEAGKLMHSLVIKL--GMSCVRRVRNSVLAVYVKCGKLIWARRFFESMDEKDGVAWNSMISGYFQIGENDEAHRLFD 247 (868)
Q Consensus 170 ~~~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~ 247 (868)
.+.++.|.+.+..-... +..+ ...+.=+. ++| .|-..=+..+.++...|++.++..+++
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~--~~Ld~ni~------------~l~-----~df~l~~i~a~sLIe~g~f~EgR~iLn 152 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTES--PWLDTNIQ------------QLF-----SDFFLDEIEAHSLIETGRFSEGRAILN 152 (549)
T ss_pred hhhHHHHHHHHHHHHhhhccccc--chhhhhHH------------HHh-----hHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 55666666665554433 1111 00000000 000 122233556677888888888888888
Q ss_pred HHHHcCC----ccChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047992 248 KMCREEI----KLGVVTFNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVG 323 (868)
Q Consensus 248 ~m~~~g~----~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 323 (868)
+|...=. ..++.+|+.++-++++. .|-++.+.....=..-|.-||..|.+.=+.-++.. -..
T Consensus 153 ~i~~~llkrE~~w~~d~yd~~vlmlsrS--------YfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~------Y~k 218 (549)
T PF07079_consen 153 RIIERLLKRECEWNSDMYDRAVLMLSRS--------YFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRP------YEK 218 (549)
T ss_pred HHHHHHhhhhhcccHHHHHHHHHHHhHH--------HHHHHHHhcccccChHHHHHHHHHHHHHHHHhhch------HHh
Confidence 8775433 36888888877777653 22222221100011123344444433211111100 011
Q ss_pred ccCCcccHHHHHHHHhch--hhHHHHHHHHHHHHHhCCCCCc-cHHHHHHHHHHcCCCHHHHHHHHHhcC--------CC
Q 047992 324 VMPNGVTITSAISACTDL--KALAMGMEIHSLAVKMGFTDDV-LVGNSLINMYSKCEELEAAERVFDMIK--------DK 392 (868)
Q Consensus 324 ~~pd~~t~~~ll~a~~~~--~~~~~a~~i~~~~~~~g~~~~~-~~~~~li~~y~~~g~~~~A~~vf~~~~--------~~ 392 (868)
+.|....+..++....-. ..+.--.+++..-.+.-+.|+- -+...|+.-..+ +.+++..+-+.+. ++
T Consensus 219 ~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~ 296 (549)
T PF07079_consen 219 FIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEE 296 (549)
T ss_pred hCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHH
Confidence 223333333333222111 1111122222222223333332 223333333333 3333333332222 22
Q ss_pred CeehHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCeeeh-------hhHHHHHHh----cCCHHHHHHHHHhcccCCCC
Q 047992 393 DVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITW-------NVLISGYIQ----NGNEDEAVDLFQRMGKNDKV 461 (868)
Q Consensus 393 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-------~~li~~~~~----~g~~~~A~~~f~~m~~~~~~ 461 (868)
=+.++..++....+.++..+|-+.+.-+.-.. |+...- ..+-+..+. .-+..+=+.+++.+...+.-
T Consensus 297 li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ld--p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD 374 (549)
T PF07079_consen 297 LIDRFGNLLSFKVKQVQTEEAKQYLALLKILD--PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID 374 (549)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC--CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc
Confidence 34456677777777787777777776665432 222110 112222221 11122223344433221100
Q ss_pred CCCeeehhh-hHHHHHhcCC-hhHHHHHHHHhhcCCCCCC-----HHhHHHHHHHHhc---hhchHHHHHHHHHHHHhCC
Q 047992 462 KRNTASWNS-LIAGYQQLGQ-KNNALGVFRKMQSSCFYPN-----CVTILSVLPACAY---LVASNKVKEIHGCVLRRSL 531 (868)
Q Consensus 462 ~~~~~~~~~-li~~~~~~g~-~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~a~~~---~~~~~~~~~i~~~~~~~~~ 531 (868)
..-.++|-. -..-+-+.|. -++|+++++.... +.|. ..++..+=.++.. ...+..-..+-..+...|+
T Consensus 375 rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~--ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl 452 (549)
T PF07079_consen 375 RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQ--FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGL 452 (549)
T ss_pred HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH--hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCC
Confidence 111112211 1222444444 6788888887764 3332 2233333334433 2455666677777888888
Q ss_pred CC----ChhHHHHHHHH--HHhcCCHHHHHHHHh--cCCCCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 047992 532 ES----SLPVMNSLIDT--YAKSGNIVYSRTIFD--GMSSKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGT 603 (868)
Q Consensus 532 ~~----~~~~~~~Li~~--y~k~g~~~~A~~~f~--~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 603 (868)
.| +..+.|-|.|+ ....|++..+.-.-. .-..|++.++..+.-....+.++++|.+.|.. ++||..+
T Consensus 453 ~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~-----LP~n~~~ 527 (549)
T PF07079_consen 453 TPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQK-----LPPNERM 527 (549)
T ss_pred CcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHh-----CCCchhh
Confidence 76 34566777665 456788887754322 22356888888888888888999999999887 6788777
Q ss_pred HHHH
Q 047992 604 FLSI 607 (868)
Q Consensus 604 ~~~l 607 (868)
+.+-
T Consensus 528 ~dsk 531 (549)
T PF07079_consen 528 RDSK 531 (549)
T ss_pred HHHH
Confidence 7654
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.25 Score=45.41 Aligned_cols=69 Identities=20% Similarity=0.377 Sum_probs=45.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHH-----hCCccCCccc
Q 047992 261 FNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMS-----FVGVMPNGVT 330 (868)
Q Consensus 261 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~-----~~g~~pd~~t 330 (868)
...++..+...|++++|.++.+.+....+- |...|..+|.+|...|+..+|++.|+++. +.|+.|+..|
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 344556666788888888888888777555 77788888888888888888888887764 2366666544
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.35 Score=48.72 Aligned_cols=109 Identities=17% Similarity=0.274 Sum_probs=69.6
Q ss_pred CCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHH
Q 047992 462 KRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSL 541 (868)
Q Consensus 462 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L 541 (868)
|.|...|-.|...|.+.|+.+.|..-|....+ +.|+ ++.....+
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r--L~g~----------------------------------n~~~~~g~ 196 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALR--LAGD----------------------------------NPEILLGL 196 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHH--hCCC----------------------------------CHHHHHHH
Confidence 67788888888888888888888888887764 2222 22223333
Q ss_pred HHH--HHhcC-CHHHHHHHHhcCCC---CCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047992 542 IDT--YAKSG-NIVYSRTIFDGMSS---KDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSII 608 (868)
Q Consensus 542 i~~--y~k~g-~~~~A~~~f~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 608 (868)
... |..-| ...++..+|+++.. -|+.+..-+..++.+.|++.+|...|+.|.. .-|.......++
T Consensus 197 aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~--~lp~~~~rr~~i 267 (287)
T COG4235 197 AEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLD--LLPADDPRRSLI 267 (287)
T ss_pred HHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHh--cCCCCCchHHHH
Confidence 322 22222 23456666666542 3555666677788888888888888888888 445555555554
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.18 Score=49.60 Aligned_cols=114 Identities=11% Similarity=0.140 Sum_probs=82.4
Q ss_pred HHHHHHhhcC--CCChhhHHHHHHHHHhc-----CChhHHHHHHHHHHHcCCccChhhHHHHHHHHHhcCChHH--HHHH
Q 047992 210 WARRFFESMD--EKDGVAWNSMISGYFQI-----GENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQLGQCDV--AMEM 280 (868)
Q Consensus 210 ~A~~~f~~~~--~~d~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~--A~~~ 280 (868)
..++.|...+ ++|-.+|-+++..|... +.++-....++.|.+-|+..|..+|+.|++.+-+-.-... -.++
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3466777777 67888999999888754 5677777788899999999999999999998766433221 1112
Q ss_pred HHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcccHHHHHHHHhchhhH
Q 047992 281 VKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISACTDLKAL 344 (868)
Q Consensus 281 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~ 344 (868)
|-..+ .+-+-+++++++|...|+.||..+-..+++++.+.+..
T Consensus 132 F~HYP---------------------~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 132 FLHYP---------------------QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HhhCc---------------------hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 21111 12345788888888888889988888888888876654
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.18 Score=53.97 Aligned_cols=32 Identities=13% Similarity=0.223 Sum_probs=19.5
Q ss_pred CchhHHHHHHHHhhcCCChhHHHHHHHHHhcCC
Q 047992 702 DVLIQRLILQIYAICGKPEDALKVRKLERENTR 734 (868)
Q Consensus 702 ~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 734 (868)
|.++..+++.+|....+-+|+ ++.+..++..+
T Consensus 245 ~igav~~f~~L~~~e~k~~e~-q~~ri~Ree~L 276 (453)
T PLN03098 245 NIGGIVAFVSLFLWENKKEEE-QMSQITRDETL 276 (453)
T ss_pred HHHHHHHHHHHHHHHhcccHH-HHHHHHhhhhh
Confidence 346667788888766655554 44445666544
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.24 Score=54.38 Aligned_cols=131 Identities=21% Similarity=0.265 Sum_probs=82.7
Q ss_pred HhcCChHHHHHHHHHHH-HCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHH
Q 047992 577 VLHGFWHAALDLFDQMK-SFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEE 655 (868)
Q Consensus 577 ~~~g~~~~A~~l~~~m~-~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~e 655 (868)
...|+.++++++...-. -..++ ..-...++.-+.+.|..+.|+++-..-.. --++....|+++.
T Consensus 272 v~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~~-------------rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPDH-------------RFELALQLGNLDI 336 (443)
T ss_dssp HHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH-------------HHHHHHHCT-HHH
T ss_pred HHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChHH-------------HhHHHHhcCCHHH
Confidence 34667777665554111 11122 22345555666777888888776543322 2456678999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHHhcC
Q 047992 656 AMEFIEDMPIEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLERENT 733 (868)
Q Consensus 656 A~~~i~~~~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 733 (868)
|.+..++. ++...|..|...+..+||++.|+.++++. ..+..|+-+|...|+-+.-.++-+.-..+|
T Consensus 337 A~~~a~~~---~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~--------~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 337 ALEIAKEL---DDPEKWKQLGDEALRQGNIELAEECYQKA--------KDFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHCCCC---STHHHHHHHHHHHHHTTBHHHHHHHHHHC--------T-HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHhc---CcHHHHHHHHHHHHHcCCHHHHHHHHHhh--------cCccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 99998875 47889999999999999999999999986 456678889999998766666655555444
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.029 Score=45.03 Aligned_cols=58 Identities=21% Similarity=0.186 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcc----CCC---CchhHHHHHHHHhhcCCChhHHHHHHH
Q 047992 671 IWEALLTACRIHGNIDLAVLAIERLFDL----EPG---DVLIQRLILQIYAICGKPEDALKVRKL 728 (868)
Q Consensus 671 ~w~~ll~a~~~~~~~~~a~~~~~~~~~l----~p~---~~~~~~~l~~~y~~~g~~~~a~~~~~~ 728 (868)
++..+...++..|+++.|+..+++++++ .|+ -...+..++++|...|++++|.+..+.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6677777788888888888888888754 222 245688899999999999999997654
|
... |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.19 E-value=14 Score=42.75 Aligned_cols=177 Identities=12% Similarity=0.073 Sum_probs=105.6
Q ss_pred HHHHHHHHcCChHHHHHHHhhcCCCChhhHHH----HHHHHHhcCChhHHHHHHHHHHHcCCccChhhHHHHHHHHHhcC
Q 047992 197 SVLAVYVKCGKLIWARRFFESMDEKDGVAWNS----MISGYFQIGENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQLG 272 (868)
Q Consensus 197 ~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~----li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g 272 (868)
.-+++..+...++.|..+-..-.. |...-.. ...-+.+.|++++|..-|-+-... +.| ..+|.-|....
T Consensus 339 ~kL~iL~kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq 411 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQ 411 (933)
T ss_pred HHHHHHHHhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHH
Confidence 345555666666666665544322 2222222 223345678888887777554421 111 23444555555
Q ss_pred ChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcccHHHHHHHHhchhhHHHHHHHHH
Q 047992 273 QCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHS 352 (868)
Q Consensus 273 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~ 352 (868)
++.+-...++.+.+.|+. +...-+.|+.+|.+.++.++-.++.+.-. .|.. .+-+..++..|.+.+-+++|..+-.
T Consensus 412 ~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~ 487 (933)
T KOG2114|consen 412 RIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLAT 487 (933)
T ss_pred HHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHH
Confidence 566666677777777777 77788888999999988888777776553 3322 2235566777777777776665533
Q ss_pred HHHHhCCCCCccHHHHHHHHHHcCCCHHHHHHHHHhcCCC
Q 047992 353 LAVKMGFTDDVLVGNSLINMYSKCEELEAAERVFDMIKDK 392 (868)
Q Consensus 353 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~vf~~~~~~ 392 (868)
...+ +..+...+ +-..+++++|.+.+..++-+
T Consensus 488 k~~~-----he~vl~il---le~~~ny~eAl~yi~slp~~ 519 (933)
T KOG2114|consen 488 KFKK-----HEWVLDIL---LEDLHNYEEALRYISSLPIS 519 (933)
T ss_pred Hhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcCCHH
Confidence 3221 33333333 34568899999999988754
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.56 Score=50.41 Aligned_cols=113 Identities=12% Similarity=0.059 Sum_probs=84.9
Q ss_pred ChHHHHHHHHHhhhhcCCCCCh-hHHHHHHHhhh---------hcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 047992 616 MVDLGKKVFCSITECYQIIPMI-EHYSAMIDLYG---------RSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHG 683 (868)
Q Consensus 616 ~~~~a~~~~~~m~~~~~~~p~~-~~y~~lvd~l~---------r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~ 683 (868)
..+.|..+|........+.|+. ..|.++...+. ......+|.++.++. ...| |+.....+.-+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 3567888899888656677773 34554443322 233456777777766 4444 5556666666777788
Q ss_pred CHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHH
Q 047992 684 NIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKL 728 (868)
Q Consensus 684 ~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 728 (868)
+++.|...++++++++|+.+.+|...+++..-+|+.++|.+..+.
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 899999999999999999999999999999999999999986553
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.92 E-value=10 Score=40.36 Aligned_cols=136 Identities=14% Similarity=0.199 Sum_probs=89.2
Q ss_pred eeehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHH
Q 047992 429 VITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLP 508 (868)
Q Consensus 429 ~~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 508 (868)
...|...++.-.+..-++.|..+|-+..+.+.+.+++..++++|.-+++ |++.-|..+|+--.. .
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~--~------------ 461 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLL--K------------ 461 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHH--h------------
Confidence 3455666666666777888888888887777677788888888776654 445556666553221 1
Q ss_pred HHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCC---C--ceecHHHHHHHHhcCChH
Q 047992 509 ACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMSSK---D--IITWNSLICGYVLHGFWH 583 (868)
Q Consensus 509 a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~---d--~~~~~~li~~~~~~g~~~ 583 (868)
++.++..-+-.++.+...++-+.|+.+|+...++ + -..|..||.--.+-|+..
T Consensus 462 ----------------------f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN 519 (660)
T COG5107 462 ----------------------FPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLN 519 (660)
T ss_pred ----------------------CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchH
Confidence 2222223344555666777888888888754332 2 235777887777888888
Q ss_pred HHHHHHHHHHHCCCCCCHHH
Q 047992 584 AALDLFDQMKSFGLKPNRGT 603 (868)
Q Consensus 584 ~A~~l~~~m~~~g~~p~~~t 603 (868)
.|..+=++|.+ +-|...+
T Consensus 520 ~v~sLe~rf~e--~~pQen~ 537 (660)
T COG5107 520 NVYSLEERFRE--LVPQENL 537 (660)
T ss_pred HHHhHHHHHHH--HcCcHhH
Confidence 88888888877 5666544
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.61 Score=48.85 Aligned_cols=92 Identities=16% Similarity=0.153 Sum_probs=69.8
Q ss_pred HHHHHHhhhhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcC
Q 047992 640 YSAMIDLYGRSGKLEEAMEFIEDM-PIEPDSS-IWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICG 717 (868)
Q Consensus 640 y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~~~-~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g 717 (868)
+.-+.-++.+.+.+.+|++..++. ...|+.+ ..---..||...|+++.|+..++++++++|+|-.+..-|+.+-.+..
T Consensus 260 ~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~ 339 (397)
T KOG0543|consen 260 HLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIR 339 (397)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence 344555667778888888887776 4455443 55556778888999999999999999999999999988888877777
Q ss_pred CChhH-HHHHHHHHh
Q 047992 718 KPEDA-LKVRKLERE 731 (868)
Q Consensus 718 ~~~~a-~~~~~~m~~ 731 (868)
+.++. .++++.|-.
T Consensus 340 ~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 340 EYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHhh
Confidence 66665 557777744
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.75 E-value=7.5 Score=38.15 Aligned_cols=166 Identities=18% Similarity=0.169 Sum_probs=117.4
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhcCCCC---CceecHHHHH-HHHhcCChHHHHHHHHHHHHCCCCC----CHHHH
Q 047992 533 SSLPVMNSLIDTYAKSGNIVYSRTIFDGMSSK---DIITWNSLIC-GYVLHGFWHAALDLFDQMKSFGLKP----NRGTF 604 (868)
Q Consensus 533 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~---d~~~~~~li~-~~~~~g~~~~A~~l~~~m~~~g~~p----~~~t~ 604 (868)
.....+..+...+...++...+.+.+...... +...+..... .+...|+.++|...|++... ..| ....+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~ 170 (291)
T COG0457 93 NLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEAL 170 (291)
T ss_pred chHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHH
Confidence 34455566666777777788888888766542 2223333334 67888999999999999865 444 22344
Q ss_pred HHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhc
Q 047992 605 LSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPD-SSIWEALLTACRIH 682 (868)
Q Consensus 605 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~-~~~w~~ll~a~~~~ 682 (868)
......+...+..+++...+.......... ....+..+...+...|.+++|...+... ...|+ ...+..+...+...
T Consensus 171 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (291)
T COG0457 171 LALGALLEALGRYEEALELLEKALKLNPDD-DAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLEL 249 (291)
T ss_pred HHhhhHHHHhcCHHHHHHHHHHHHhhCccc-chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHc
Confidence 444444667889999999998887632211 3566778888888899999999999887 44454 45666666666666
Q ss_pred CCHHHHHHHHHHHhccCCC
Q 047992 683 GNIDLAVLAIERLFDLEPG 701 (868)
Q Consensus 683 ~~~~~a~~~~~~~~~l~p~ 701 (868)
++.+.+....++.++..|.
T Consensus 250 ~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 250 GRYEEALEALEKALELDPD 268 (291)
T ss_pred CCHHHHHHHHHHHHHhCcc
Confidence 7899999999999999997
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.3 Score=50.63 Aligned_cols=129 Identities=13% Similarity=0.058 Sum_probs=92.2
Q ss_pred HHHHHHHHHhhccCChHHHHHHHHH---hhhhcCCCCC-hhHHHHHHHhhhhcCChHHHHHHHHhC-----CCC---CCH
Q 047992 602 GTFLSIILAHSLAGMVDLGKKVFCS---ITECYQIIPM-IEHYSAMIDLYGRSGKLEEAMEFIEDM-----PIE---PDS 669 (868)
Q Consensus 602 ~t~~~ll~a~~~~g~~~~a~~~~~~---m~~~~~~~p~-~~~y~~lvd~l~r~g~~~eA~~~i~~~-----~~~---p~~ 669 (868)
..|-.+.+.|.-.|+++.|+...+. +.++||.... ...++-+...+.-.|+++.|.+.++.. .+. ..+
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 3455555566667899999887763 4455666543 336777888888899999999988764 111 223
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccC------CCCchhHHHHHHHHhhcCCChhHHHHHHHHH
Q 047992 670 SIWEALLTACRIHGNIDLAVLAIERLFDLE------PGDVLIQRLILQIYAICGKPEDALKVRKLER 730 (868)
Q Consensus 670 ~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~------p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 730 (868)
-..-+|.++|..-++++.|.....+=+.+- -....+|-.|+|.|...|.-+.|......-.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 366788889998899999988887655432 2345778899999999999999988655443
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.38 E-value=13 Score=42.71 Aligned_cols=47 Identities=11% Similarity=0.202 Sum_probs=28.4
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhcCCCCeehHHHHHHHHHhcCChh
Q 047992 365 VGNSLINMYSKCEELEAAERVFDMIKDKDVYSWNSMIAGYCQAGYCG 411 (868)
Q Consensus 365 ~~~~li~~y~~~g~~~~A~~vf~~~~~~~~~~~~~li~~~~~~g~~~ 411 (868)
++..+|+-+.-.|++++|-...-.|...+..-|.--+..+...++..
T Consensus 394 v~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~ 440 (846)
T KOG2066|consen 394 VGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLT 440 (846)
T ss_pred HHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccc
Confidence 44555666666666666666666666666666665555555555543
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=93.35 E-value=1.4 Score=43.16 Aligned_cols=140 Identities=17% Similarity=0.180 Sum_probs=77.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHH
Q 047992 570 NSLICGYVLHGFWHAALDLFDQMKSFGLKPNR----GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMID 645 (868)
Q Consensus 570 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd 645 (868)
-.....+.+.|++.+|++.|+++... -|+. .....+..++...|+.++|...|+...+.|+-.|... +.-..-
T Consensus 9 Y~~a~~~~~~g~y~~Ai~~f~~l~~~--~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~-~A~Y~~ 85 (203)
T PF13525_consen 9 YQKALEALQQGDYEEAIKLFEKLIDR--YPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKAD-YALYML 85 (203)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHH-HHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh-hHHHHH
Confidence 34455667788888888888888763 2321 3445566677778888888888888777776666543 111111
Q ss_pred hhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchh-----------------HHH
Q 047992 646 LYGRSGKLEEAMEFIEDMPIEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLI-----------------QRL 708 (868)
Q Consensus 646 ~l~r~g~~~eA~~~i~~~~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~-----------------~~~ 708 (868)
++ ..++. |...+...+..+....|...++.+++.-|+++-. -..
T Consensus 86 g~----------~~~~~---------~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ 146 (203)
T PF13525_consen 86 GL----------SYYKQ---------IPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELY 146 (203)
T ss_dssp HH----------HHHHH---------HHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH----------HHHHh---------CccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 00000 0000011222344566677777777777765433 234
Q ss_pred HHHHHhhcCCChhHHHHHHHHHh
Q 047992 709 ILQIYAICGKPEDALKVRKLERE 731 (868)
Q Consensus 709 l~~~y~~~g~~~~a~~~~~~m~~ 731 (868)
.+..|.+.|+|..|..-.+.+.+
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~ 169 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIE 169 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHH
Confidence 68889999999999887666643
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.31 E-value=1.8 Score=43.59 Aligned_cols=117 Identities=14% Similarity=0.106 Sum_probs=76.3
Q ss_pred HhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhCCCCCCHHHHHHHH---HHHHhcCCHH
Q 047992 610 AHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPIEPDSSIWEALL---TACRIHGNID 686 (868)
Q Consensus 610 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~~~~p~~~~w~~ll---~a~~~~~~~~ 686 (868)
.....|+..++...|....... .-+.+.-..|..+|..+|+.++|..++..+|.+-...-|..|- .......+..
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~--~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA--PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC--cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 3445667777777777665522 2224456667788888888888888888887665555554421 1122222222
Q ss_pred HHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHH-HHHH
Q 047992 687 LAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKV-RKLE 729 (868)
Q Consensus 687 ~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~-~~~m 729 (868)
.. ..+++-+.-+|+|...-..|+..|-..|+.++|.+. ...|
T Consensus 221 ~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 221 EI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred CH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 11 224455678999999999999999999999999884 4444
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.30 E-value=2.9 Score=37.94 Aligned_cols=123 Identities=13% Similarity=0.120 Sum_probs=60.5
Q ss_pred HHHHhhCCCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHcCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHH
Q 047992 163 ILQACGNCGDFEAGKLMHSLVIKLGMSCVRRVRNSVLAVYVKCGKLIWARRFFESMDEKDGVAWNSMISGYFQIGENDEA 242 (868)
Q Consensus 163 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A 242 (868)
++..+...+........+..+++.+ ..+....|.++..|++.. .......+.. ..+......+++.+.+.+.++++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~~~ 88 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLYEEA 88 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcHHHH
Confidence 3444443444444555555555444 245556666666666543 2333344432 22344445566666666666666
Q ss_pred HHHHHHHHHcCCccChhhHHHHHHHHHhc-CChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHH
Q 047992 243 HRLFDKMCREEIKLGVVTFNILIRSYNQL-GQCDVAMEMVKRMESLGITPDVFTWTCMISGFA 304 (868)
Q Consensus 243 ~~l~~~m~~~g~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 304 (868)
.-++.++.. +...+..+.+. ++.+.|.+.+.+-. +...|..++..+.
T Consensus 89 ~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~~------~~~lw~~~~~~~l 136 (140)
T smart00299 89 VELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQN------NPELWAEVLKALL 136 (140)
T ss_pred HHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhCC------CHHHHHHHHHHHH
Confidence 666655532 22223333333 55666666555421 4445555555443
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=93.17 E-value=0.32 Score=42.97 Aligned_cols=94 Identities=16% Similarity=0.198 Sum_probs=64.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCCCCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccC
Q 047992 536 PVMNSLIDTYAKSGNIVYSRTIFDGMSSKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAG 615 (868)
Q Consensus 536 ~~~~~Li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 615 (868)
.++.+++-++++.|+++....+.+..=.-|+ .+-...+. --......|+..+..+++.++...|
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~-------~~~~~~~~---------~~~~spl~Pt~~lL~AIv~sf~~n~ 66 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDV-------NGKKKEGD---------YPPSSPLYPTSRLLIAIVHSFGYNG 66 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCC-------CCccccCc---------cCCCCCCCCCHHHHHHHHHHHHhcc
Confidence 3455666667777777776666654322111 11111111 1123447899999999999999999
Q ss_pred ChHHHHHHHHHhhhhcCCCCChhHHHHHHH
Q 047992 616 MVDLGKKVFCSITECYQIIPMIEHYSAMID 645 (868)
Q Consensus 616 ~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd 645 (868)
++..|.++.+...+.|+++-....|..|..
T Consensus 67 ~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 67 DIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred cHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 999999999999999998777777776664
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.09 E-value=4 Score=42.71 Aligned_cols=125 Identities=12% Similarity=0.074 Sum_probs=69.2
Q ss_pred ecHHHHHHHHhcCChHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHH
Q 047992 568 TWNSLICGYVLHGFWHAALDLFDQMKS----FGLKP-NRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSA 642 (868)
Q Consensus 568 ~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~ 642 (868)
.+..+..+++-.|+++.|++.|+.-.. .|-+. ......++.++|.-...+++|+.|+..-..
T Consensus 237 A~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLa------------- 303 (639)
T KOG1130|consen 237 AHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLA------------- 303 (639)
T ss_pred hhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH-------------
Confidence 345566677777777777777766432 22221 224555666666666677777777764322
Q ss_pred HHHhhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc-----CCC-CchhHHHHHHHHhhc
Q 047992 643 MIDLYGRSGKLEEAMEFIEDMPIEPDSSIWEALLTACRIHGNIDLAVLAIERLFDL-----EPG-DVLIQRLILQIYAIC 716 (868)
Q Consensus 643 lvd~l~r~g~~~eA~~~i~~~~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l-----~p~-~~~~~~~l~~~y~~~ 716 (868)
-|.++=+.. -..-.+-+|..++-..|+.+.|...+++.+++ ||. ...+-+.|++.-...
T Consensus 304 ------------IAqeL~Dri---Ge~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~l 368 (639)
T KOG1130|consen 304 ------------IAQELEDRI---GELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILEL 368 (639)
T ss_pred ------------HHHHHHHhh---hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHh
Confidence 111111111 01223446777777777777777777766653 222 334556677766666
Q ss_pred CCCh
Q 047992 717 GKPE 720 (868)
Q Consensus 717 g~~~ 720 (868)
|+-+
T Consensus 369 G~~d 372 (639)
T KOG1130|consen 369 GQED 372 (639)
T ss_pred CCCc
Confidence 6544
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=93.08 E-value=10 Score=39.11 Aligned_cols=66 Identities=14% Similarity=-0.045 Sum_probs=30.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCC-C--CceecHHHHHHHH--hcCChHHHHHHHHHHHHCCCCCC
Q 047992 535 LPVMNSLIDTYAKSGNIVYSRTIFDGMSS-K--DIITWNSLICGYV--LHGFWHAALDLFDQMKSFGLKPN 600 (868)
Q Consensus 535 ~~~~~~Li~~y~k~g~~~~A~~~f~~~~~-~--d~~~~~~li~~~~--~~g~~~~A~~l~~~m~~~g~~p~ 600 (868)
+.++-.-++...+.++.+.+.+++.+|.. . ....+..++..+- .......|...+.+++..-+.|.
T Consensus 121 ~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~ 191 (278)
T PF08631_consen 121 PEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSS 191 (278)
T ss_pred cHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCC
Confidence 33333334444446666666666665542 1 2234444444441 11223455555555554434443
|
It is also involved in sporulation []. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.06 E-value=3.5 Score=44.66 Aligned_cols=101 Identities=16% Similarity=0.170 Sum_probs=72.3
Q ss_pred HHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhCCC--CCCHH--HHHHHHHHHH
Q 047992 605 LSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPI--EPDSS--IWEALLTACR 680 (868)
Q Consensus 605 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~~~--~p~~~--~w~~ll~a~~ 680 (868)
..+..++.+.|..+||.+.|+.|.+++...-.......++..|...+.+.|+..++.+-.. .|... .|.+.|-..|
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 3455566788999999999999988765444444566788999999999999999999741 34444 4555554455
Q ss_pred hcCCH---------------HHHHHHHHHHhccCCCCchh
Q 047992 681 IHGNI---------------DLAVLAIERLFDLEPGDVLI 705 (868)
Q Consensus 681 ~~~~~---------------~~a~~~~~~~~~l~p~~~~~ 705 (868)
.-+|. ..|.++..++++.+|.-+.+
T Consensus 343 av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~Y 382 (539)
T PF04184_consen 343 AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKY 382 (539)
T ss_pred hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchh
Confidence 44441 23568899999999976544
|
The molecular function of this protein is uncertain. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=92.97 E-value=4.6 Score=35.30 Aligned_cols=140 Identities=18% Similarity=0.136 Sum_probs=77.5
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHH
Q 047992 577 VLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEA 656 (868)
Q Consensus 577 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA 656 (868)
.-.|..++..++..+..... +..-++-++.--..+-+-+--.+.++++-+-+.+.|-.. .-.+|..+.+.|...|
T Consensus 13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~N-lKrVi~C~~~~n~~se- 87 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGN-LKRVIECYAKRNKLSE- 87 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S--THHHHHHHHHTT---H-
T ss_pred HHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcc-hHHHHHHHHHhcchHH-
Confidence 34677777777777776521 122222222222222223334455555555444444221 2234444444444433
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHHhcCCC
Q 047992 657 MEFIEDMPIEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLERENTRR 735 (868)
Q Consensus 657 ~~~i~~~~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 735 (868)
...-.|++....|.-|.-.+++..+++-+..+|...+-+++.|.+.|.-.++.++++..=++|++
T Consensus 88 --------------~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 88 --------------YVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp --------------HHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred --------------HHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 23345677788899999999999999877778899999999999999999999999888888875
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.87 E-value=11 Score=37.46 Aligned_cols=56 Identities=18% Similarity=0.151 Sum_probs=45.8
Q ss_pred HHHHhcCCHHHHHHHHHHHhccCCCCch---hHHHHHHHHhhcCCChhHHHHHHHHHhc
Q 047992 677 TACRIHGNIDLAVLAIERLFDLEPGDVL---IQRLILQIYAICGKPEDALKVRKLEREN 732 (868)
Q Consensus 677 ~a~~~~~~~~~a~~~~~~~~~l~p~~~~---~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 732 (868)
.-|...|...-|..-++.+++--|+-+. ++..|.+.|...|.-++|.+..+.+...
T Consensus 175 ryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 175 RYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 3466789999999999999998776554 4566778899999999999999988754
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.61 E-value=0.79 Score=41.01 Aligned_cols=70 Identities=21% Similarity=0.196 Sum_probs=49.1
Q ss_pred hhhcCChHHHHHHHHhC----CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCch---hHHHHHHHHhhc
Q 047992 647 YGRSGKLEEAMEFIEDM----PIEPDSS-IWEALLTACRIHGNIDLAVLAIERLFDLEPGDVL---IQRLILQIYAIC 716 (868)
Q Consensus 647 l~r~g~~~eA~~~i~~~----~~~p~~~-~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~---~~~~l~~~y~~~ 716 (868)
..+.|++++|.+.++.. |..|-.. +--.|+.++...++++.|...+++.+++.|.++. ++...+-.+...
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~ 97 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQ 97 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHH
Confidence 34578888888887776 4444322 4456888899999999999999999999998763 333444444443
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=92.28 E-value=2.7 Score=38.62 Aligned_cols=51 Identities=12% Similarity=0.006 Sum_probs=27.6
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHH
Q 047992 269 NQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMS 320 (868)
Q Consensus 269 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 320 (868)
...|++++|..+|.-+.-.++. |..-|..|..++-..+++++|+..|....
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~ 98 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAF 98 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666665554333 34445555555555555555555555443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=92.23 E-value=17 Score=43.74 Aligned_cols=152 Identities=15% Similarity=0.135 Sum_probs=79.3
Q ss_pred cCCHHHHHHHHhcCCCCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH----HHhhccCChHHHHHH
Q 047992 548 SGNIVYSRTIFDGMSSKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSII----LAHSLAGMVDLGKKV 623 (868)
Q Consensus 548 ~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll----~a~~~~g~~~~a~~~ 623 (868)
.|++++|..-+.++. ...|+-.+.---+||.+.+|+.++ +|+..++.-+. .-|...+..++|--.
T Consensus 893 L~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~ 961 (1265)
T KOG1920|consen 893 LKRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALM 961 (1265)
T ss_pred HHHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 356677766666554 334555555556788888887764 45554444433 334455555665555
Q ss_pred HHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 047992 624 FCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPIEPDSSI--WEALLTACRIHGNIDLAVLAIERLFDLEPG 701 (868)
Q Consensus 624 ~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~~~~p~~~~--w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~ 701 (868)
|+..-+ ..--+.+|-.+|++.+|..+..++....|... -..|.+-|...+..-.|-++.+..+. +|.
T Consensus 962 Ye~~Gk----------lekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s-d~~ 1030 (1265)
T KOG1920|consen 962 YERCGK----------LEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLS-DPE 1030 (1265)
T ss_pred HHHhcc----------HHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc-CHH
Confidence 554322 11112344456667777776666644444432 24555566655554444443333222 111
Q ss_pred CchhHHHHHHHHhhcCCChhHHHHHH
Q 047992 702 DVLIQRLILQIYAICGKPEDALKVRK 727 (868)
Q Consensus 702 ~~~~~~~l~~~y~~~g~~~~a~~~~~ 727 (868)
--.-+|.++..|++|.++-.
T Consensus 1031 ------~av~ll~ka~~~~eAlrva~ 1050 (1265)
T KOG1920|consen 1031 ------EAVALLCKAKEWEEALRVAS 1050 (1265)
T ss_pred ------HHHHHHhhHhHHHHHHHHHH
Confidence 12234556667777777644
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.08 E-value=2.8 Score=37.59 Aligned_cols=113 Identities=12% Similarity=0.075 Sum_probs=57.1
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhc
Q 047992 574 CGYVLHGFWHAALDLFDQMKSFGLKPN---RGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRS 650 (868)
Q Consensus 574 ~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~ 650 (868)
....+.|++++|++.|+.+... .... ...-+.++.++...|++++|...++..++-+.-.|++. |.-....|..-
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vd-Ya~Y~~gL~~~ 95 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVD-YAYYMRGLSYY 95 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCcc-HHHHHHHHHHH
Confidence 3344566666666666666553 1111 13344555566666666666666666666555555432 33222222211
Q ss_pred CChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 047992 651 GKLEEAMEFIEDMPIEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDV 703 (868)
Q Consensus 651 g~~~eA~~~i~~~~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~ 703 (868)
+.-...+..++ +.=+-.+....|...+++++..-|++.
T Consensus 96 ---~~~~~~~~~~~------------~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 96 ---EQDEGSLQSFF------------RSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred ---HHhhhHHhhhc------------ccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 11111122211 111222346788888899999999764
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.07 E-value=3.8 Score=39.13 Aligned_cols=179 Identities=17% Similarity=0.113 Sum_probs=104.4
Q ss_pred HHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCChHHH
Q 047992 545 YAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR-GTFLSIILAHSLAGMVDLG 620 (868)
Q Consensus 545 y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a 620 (868)
|-..|-+.-|+--|.+.. ++-+..+|-+.--+...|+++.|.+.|+...+ +.|.. .++..-.-++...|+..-|
T Consensus 75 YDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~Ya~lNRgi~~YY~gR~~LA 152 (297)
T COG4785 75 YDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRYKLA 152 (297)
T ss_pred hhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhc--cCCcchHHHhccceeeeecCchHhh
Confidence 444555666666665432 33345677777777788888888888888877 55643 5555555566677888777
Q ss_pred HHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCC
Q 047992 621 KKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPIEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEP 700 (868)
Q Consensus 621 ~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p 700 (868)
.+-|...-+.-+-.|-...|- -+-.+.-+..+|..-+.+=-..-|..-|+..+-.+..-+=-++ .+++++.+-..
T Consensus 153 q~d~~~fYQ~D~~DPfR~LWL---Yl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~e--~l~~~~~a~a~ 227 (297)
T COG4785 153 QDDLLAFYQDDPNDPFRSLWL---YLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISEE--TLMERLKADAT 227 (297)
T ss_pred HHHHHHHHhcCCCChHHHHHH---HHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccHH--HHHHHHHhhcc
Confidence 776655443323333222222 2222344556665544433234566678777665543221111 11222222222
Q ss_pred CC-------chhHHHHHHHHhhcCCChhHHHHHHHHH
Q 047992 701 GD-------VLIQRLILQIYAICGKPEDALKVRKLER 730 (868)
Q Consensus 701 ~~-------~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 730 (868)
++ ..+|..|+.-|...|..++|..+.|...
T Consensus 228 ~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLai 264 (297)
T COG4785 228 DNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAV 264 (297)
T ss_pred chHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 22 4678999999999999999999998664
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.00 E-value=7.6 Score=39.28 Aligned_cols=153 Identities=16% Similarity=0.168 Sum_probs=105.2
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCC
Q 047992 574 CGYVLHGFWHAALDLFDQMKSFGLKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGK 652 (868)
Q Consensus 574 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~ 652 (868)
......|+..+|..+|+...+ ..|+. ..-..+..++...|++++|..++..+-.+..-. .......-++++.++..
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~--~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~-~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQ--AAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDK-AAHGLQAQIELLEQAAA 218 (304)
T ss_pred hhhhhccchhhHHHHHHHHHH--hCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhh-HHHHHHHHHHHHHHHhc
Confidence 456678899999999999888 44543 455667778889999999999998764421111 11112345678888888
Q ss_pred hHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccC--CCCchhHHHHHHHHhhcCCChh-HHHHHHH
Q 047992 653 LEEAMEFIEDMPIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLE--PGDVLIQRLILQIYAICGKPED-ALKVRKL 728 (868)
Q Consensus 653 ~~eA~~~i~~~~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~--p~~~~~~~~l~~~y~~~g~~~~-a~~~~~~ 728 (868)
..+..++..+..-.| |...--.|...+...|+.|.|...+-.++..+ -+|..+--.|..++..-|.-+. +.+.|+.
T Consensus 219 ~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RRk 298 (304)
T COG3118 219 TPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRRK 298 (304)
T ss_pred CCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 888888887775566 44455667777788899988877766666544 3566777777788877775544 4445665
Q ss_pred H
Q 047992 729 E 729 (868)
Q Consensus 729 m 729 (868)
|
T Consensus 299 L 299 (304)
T COG3118 299 L 299 (304)
T ss_pred H
Confidence 5
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=91.84 E-value=11 Score=35.13 Aligned_cols=131 Identities=13% Similarity=0.170 Sum_probs=70.2
Q ss_pred HHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcccHHHHHHHHhch--hhHHHHHHHHHHHHH
Q 047992 279 EMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISACTDL--KALAMGMEIHSLAVK 356 (868)
Q Consensus 279 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~--~~~~~a~~i~~~~~~ 356 (868)
+.++.+.+.++.|+...|..+|..+.+.|++.. +.++.+.++-||.......+-..... .-...|.+++.++..
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~ 90 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLGT 90 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhhh
Confidence 344555566777777777777888887777544 34444567777776665544333221 112223333322211
Q ss_pred hCCCCCccHHHHHHHHHHcCCCHHHHHHHHHhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHhH
Q 047992 357 MGFTDDVLVGNSLINMYSKCEELEAAERVFDMIKDKDVYSWNSMIAGYCQAGYCGKAYELFIKMQ 421 (868)
Q Consensus 357 ~g~~~~~~~~~~li~~y~~~g~~~~A~~vf~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 421 (868)
.+..+++.+...|++-+|.+..+.....+......++.+-.+.++...-..+|+-..
T Consensus 91 --------~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 91 --------AYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred --------hHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 234455566667777777776666544444444555555555555444444444333
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.77 E-value=1.3 Score=44.09 Aligned_cols=86 Identities=16% Similarity=0.192 Sum_probs=40.8
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCCh-hHHHHHHHhhhhc
Q 047992 576 YVLHGFWHAALDLFDQMKSFGLKPNR----GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMI-EHYSAMIDLYGRS 650 (868)
Q Consensus 576 ~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~y~~lvd~l~r~ 650 (868)
+.+.|++.+|...|...++. -|+. ..+.-|..++...|+.++|..+|..+.++|+-.|.. +.+--+...+++.
T Consensus 151 ~~ksgdy~~A~~~F~~fi~~--YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l 228 (262)
T COG1729 151 LYKSGDYAEAEQAFQAFIKK--YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRL 228 (262)
T ss_pred HHHcCCHHHHHHHHHHHHHc--CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHh
Confidence 33455566666666665552 2221 122223444555555555555555555555544443 4444444444444
Q ss_pred CChHHHHHHHHhC
Q 047992 651 GKLEEAMEFIEDM 663 (868)
Q Consensus 651 g~~~eA~~~i~~~ 663 (868)
|+.++|...+++.
T Consensus 229 ~~~d~A~atl~qv 241 (262)
T COG1729 229 GNTDEACATLQQV 241 (262)
T ss_pred cCHHHHHHHHHHH
Confidence 4444444444433
|
|
| >PRK12798 chemotaxis protein; Reviewed | Back alignment and domain information |
|---|
Probab=91.54 E-value=22 Score=38.04 Aligned_cols=166 Identities=19% Similarity=0.251 Sum_probs=114.9
Q ss_pred cCCHHHHHHHHhcCCCC----CceecHHHHHHHHh-cCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHhhccCChH
Q 047992 548 SGNIVYSRTIFDGMSSK----DIITWNSLICGYVL-HGFWHAALDLFDQMKSFGLKPNR----GTFLSIILAHSLAGMVD 618 (868)
Q Consensus 548 ~g~~~~A~~~f~~~~~~----d~~~~~~li~~~~~-~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~ 618 (868)
.|+-++|.+.+..+... .+..+-+|+.+-.. ..+..+|+++|++..- .-|-- ....--+..+...|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 69999999999988743 45567777766544 5679999999999877 56643 23333445677899999
Q ss_pred HHHHHHHHhhhhcCCCCChhHHHH-HHHhhhh---cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047992 619 LGKKVFCSITECYQIIPMIEHYSA-MIDLYGR---SGKLEEAMEFIEDMPIEPDSSIWEALLTACRIHGNIDLAVLAIER 694 (868)
Q Consensus 619 ~a~~~~~~m~~~~~~~p~~~~y~~-lvd~l~r---~g~~~eA~~~i~~~~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~ 694 (868)
++..+-..-...|...|=...|.. ++.++.+ .-+.+.-.+++..|+-+--..+|-.+...-.+.|+.+.|..+.++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 998888887777887776554433 3333333 334445455555553222344777777788899999999999999
Q ss_pred HhccCCCCchhHHHHHHHHhhc
Q 047992 695 LFDLEPGDVLIQRLILQIYAIC 716 (868)
Q Consensus 695 ~~~l~p~~~~~~~~l~~~y~~~ 716 (868)
++.+.+. .+.-...+++|..+
T Consensus 283 A~~L~~~-~~~~~~ra~LY~aa 303 (421)
T PRK12798 283 ALKLADP-DSADAARARLYRGA 303 (421)
T ss_pred HHHhccC-CCcchHHHHHHHHH
Confidence 9998843 44555566666654
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=91.54 E-value=0.28 Score=31.63 Aligned_cols=32 Identities=19% Similarity=0.294 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 047992 671 IWEALLTACRIHGNIDLAVLAIERLFDLEPGD 702 (868)
Q Consensus 671 ~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~ 702 (868)
+|..+...+...|+++.|...++++++++|+|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 57777888888999999999999999999853
|
... |
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.44 E-value=24 Score=38.38 Aligned_cols=131 Identities=18% Similarity=0.178 Sum_probs=90.7
Q ss_pred CCceecHHHHHHHHhcCC-h-HHHHHHHHHHHHCCCCCCHHHHH-HHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHH
Q 047992 564 KDIITWNSLICGYVLHGF-W-HAALDLFDQMKSFGLKPNRGTFL-SIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHY 640 (868)
Q Consensus 564 ~d~~~~~~li~~~~~~g~-~-~~A~~l~~~m~~~g~~p~~~t~~-~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y 640 (868)
+-..+|++.+ .|+ . ...+.++-.....-..|+.+|+. .++.-+...|-+.+|+..|.++.. --+|+...|
T Consensus 425 ~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~--lpp~sl~l~ 497 (568)
T KOG2396|consen 425 ELLISWASAS-----EGDSLQEDTLDLIISALLSVIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQE--LPPFSLDLF 497 (568)
T ss_pred hhHHHHHHHh-----hccchhHHHHHHHHHHHHHhcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHh--CCCccHHHH
Confidence 4455676665 222 1 22223333333333678887775 456667788899999999998876 334667778
Q ss_pred HHHHHhhh---hcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc-cCCCC
Q 047992 641 SAMIDLYG---RSGKLEEAMEFIEDM--PIEPDSSIWEALLTACRIHGNIDLAVLAIERLFD-LEPGD 702 (868)
Q Consensus 641 ~~lvd~l~---r~g~~~eA~~~i~~~--~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~-l~p~~ 702 (868)
--||..-. .+| +.-+.++++.| .+-.|+.+|...+.--+.+|..+.+-.++.++++ ++|+.
T Consensus 498 r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~~~g~~en~~~~~~ra~ktl~~~~ 564 (568)
T KOG2396|consen 498 RKMIQFEKEQESCN-LANIREYYDRALREFGADSDLWMDYMKEELPLGRPENCGQIYWRAMKTLQGES 564 (568)
T ss_pred HHHHHHHhhHhhcC-chHHHHHHHHHHHHhCCChHHHHHHHHhhccCCCcccccHHHHHHHHhhChhh
Confidence 88876532 333 88888888888 4568889999999999999999999888888876 56653
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.40 E-value=1.1 Score=44.26 Aligned_cols=99 Identities=11% Similarity=0.176 Sum_probs=77.5
Q ss_pred HHHHHhcCC--CCCceecHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccC-----------
Q 047992 554 SRTIFDGMS--SKDIITWNSLICGYVLH-----GFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAG----------- 615 (868)
Q Consensus 554 A~~~f~~~~--~~d~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g----------- 615 (868)
.+..|.... ++|-.+|-+++..+..+ ++.+=--..++.|.+.|+.-|-.+|..||+.+=+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 355666666 57778888888888765 344555566788999999999999999998665443
Q ss_pred -----ChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCCh
Q 047992 616 -----MVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKL 653 (868)
Q Consensus 616 -----~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~ 653 (868)
+-+=|+.++++|.. +|+.|+-+.-..++.++||.|..
T Consensus 133 ~HYP~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hhCchhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhcccccc
Confidence 23447788999976 89999999999999999998864
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.19 E-value=1.7 Score=43.25 Aligned_cols=95 Identities=17% Similarity=0.166 Sum_probs=66.7
Q ss_pred hhccCChHHHHHHHHHhhhhcCCCC-ChhHHHHHHHhhhhcCChHHHHHHHHhC----CCCCCH-HHHHHHHHHHHhcCC
Q 047992 611 HSLAGMVDLGKKVFCSITECYQIIP-MIEHYSAMIDLYGRSGKLEEAMEFIEDM----PIEPDS-SIWEALLTACRIHGN 684 (868)
Q Consensus 611 ~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lvd~l~r~g~~~eA~~~i~~~----~~~p~~-~~w~~ll~a~~~~~~ 684 (868)
+..+|++.+|..-|....+.|.-.+ ....+--|..++.+.|++++|...|..+ |-.|-. ...--|.......||
T Consensus 151 ~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~ 230 (262)
T COG1729 151 LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN 230 (262)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence 3456778888888888888775433 3445667888888888888888877665 433332 244445555567788
Q ss_pred HHHHHHHHHHHhccCCCCchh
Q 047992 685 IDLAVLAIERLFDLEPGDVLI 705 (868)
Q Consensus 685 ~~~a~~~~~~~~~l~p~~~~~ 705 (868)
.+.|...++++.+-.|+.+.+
T Consensus 231 ~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 231 TDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHHHHHHHHHHCCCCHHH
Confidence 888888888888888877654
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.15 E-value=4.3 Score=42.81 Aligned_cols=92 Identities=12% Similarity=0.102 Sum_probs=68.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcC---CCCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh
Q 047992 536 PVMNSLIDTYAKSGNIVYSRTIFDGM---SSKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHS 612 (868)
Q Consensus 536 ~~~~~Li~~y~k~g~~~~A~~~f~~~---~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 612 (868)
.+++.|.-+|.|.+++..|.+.-+.. .++|+-..-.-..+|+..|+++.|...|+++++ +.|+...-..=|..|.
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l~ 335 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKLK 335 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHH
Confidence 45677888899999999998888754 467888888888899999999999999999999 8898766665555554
Q ss_pred c--cCChHHHHHHHHHhhh
Q 047992 613 L--AGMVDLGKKVFCSITE 629 (868)
Q Consensus 613 ~--~g~~~~a~~~~~~m~~ 629 (868)
+ .-..+...++|..|..
T Consensus 336 ~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 2 2233344555555544
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=91.14 E-value=2.6 Score=47.08 Aligned_cols=81 Identities=21% Similarity=0.185 Sum_probs=39.8
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHhhccCChHHHHHHHHHhhhhcCCCCChhH--HHHHHHhhhhcCChHHHH
Q 047992 581 FWHAALDLFDQMKSFGLKPNRGTFLSII-LAHSLAGMVDLGKKVFCSITECYQIIPMIEH--YSAMIDLYGRSGKLEEAM 657 (868)
Q Consensus 581 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~--y~~lvd~l~r~g~~~eA~ 657 (868)
..+.|.++++++.+ --|+..-|.-.- ..+...|++++|++.|+.......--|...| +--+...+.-.+++++|.
T Consensus 248 ~~~~a~~lL~~~~~--~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 248 PLEEAEELLEEMLK--RYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 34555555555555 345554443322 2334456666666666543322222233332 222344455566667766
Q ss_pred HHHHhC
Q 047992 658 EFIEDM 663 (868)
Q Consensus 658 ~~i~~~ 663 (868)
+.+..+
T Consensus 326 ~~f~~L 331 (468)
T PF10300_consen 326 EYFLRL 331 (468)
T ss_pred HHHHHH
Confidence 666666
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=90.87 E-value=4.7 Score=44.47 Aligned_cols=156 Identities=16% Similarity=0.160 Sum_probs=99.5
Q ss_pred HHhCCChhHHHHHHH--HhHHCCCCCCcchHHHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHcCChH
Q 047992 132 YSRDQRWREVVELFF--LMVQDGLFPDDFLFPKILQACGNCGDFEAGKLMHSLVIKLGMSCVRRVRNSVLAVYVKCGKLI 209 (868)
Q Consensus 132 ~~~~g~~~~a~~l~~--~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 209 (868)
..-+++++++.++.. ++. ..++ ..-...+++-+-+.|..+.|.++- .|. ..-.+...++|+++
T Consensus 271 av~~~d~~~v~~~i~~~~ll-~~i~--~~~~~~i~~fL~~~G~~e~AL~~~---------~D~---~~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLL-PNIP--KDQGQSIARFLEKKGYPELALQFV---------TDP---DHRFELALQLGNLD 335 (443)
T ss_dssp HHHTT-HHH-----HHHHTG-GG----HHHHHHHHHHHHHTT-HHHHHHHS---------S-H---HHHHHHHHHCT-HH
T ss_pred HHHcCChhhhhhhhhhhhhc-ccCC--hhHHHHHHHHHHHCCCHHHHHhhc---------CCh---HHHhHHHHhcCCHH
Confidence 344566666655554 111 1111 223555666666666666665542 222 23456677899999
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCccChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 047992 210 WARRFFESMDEKDGVAWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQLGQCDVAMEMVKRMESLGI 289 (868)
Q Consensus 210 ~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 289 (868)
.|.+..++.. +...|..|.....+.|+++-|.+.|.+..+ +..|+-.|.-.|+.+.-.++.+....+|
T Consensus 336 ~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~- 403 (443)
T PF04053_consen 336 IALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG- 403 (443)
T ss_dssp HHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc-
Confidence 9998877765 667899999999999999999999988764 6778888888999888888877776553
Q ss_pred CCCeeeHHHHHHHHHhcCChhHHHHHHHHH
Q 047992 290 TPDVFTWTCMISGFAQNGRTSQALDLFKEM 319 (868)
Q Consensus 290 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 319 (868)
-+|....++.-.|+.++..+++.+-
T Consensus 404 -----~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 404 -----DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp ------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred -----CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 2677777777778888888777653
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=90.81 E-value=5.4 Score=36.58 Aligned_cols=91 Identities=12% Similarity=0.028 Sum_probs=60.0
Q ss_pred HHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHH
Q 047992 609 LAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMP-IEPDSSIWEALLTACRIHGNIDL 687 (868)
Q Consensus 609 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~~-~~p~~~~w~~ll~a~~~~~~~~~ 687 (868)
+.-...++.+++..++..+.--..-.|.. -.+-+.++.+.|++.+|..++++.. -.|....-.+|+.-|.....-..
T Consensus 18 ~~al~~~~~~D~e~lL~ALrvLRP~~~e~--~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRVLRPEFPEL--DLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred HHHHccCChHHHHHHHHHHHHhCCCchHH--HHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH
Confidence 33345566666666666665422222323 3334556778899999999999883 34555566788888887766666
Q ss_pred HHHHHHHHhccCCC
Q 047992 688 AVLAIERLFDLEPG 701 (868)
Q Consensus 688 a~~~~~~~~~l~p~ 701 (868)
=...++.+++-+|+
T Consensus 96 Wr~~A~evle~~~d 109 (160)
T PF09613_consen 96 WRRYADEVLESGAD 109 (160)
T ss_pred HHHHHHHHHhcCCC
Confidence 67778888887774
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=90.56 E-value=23 Score=36.56 Aligned_cols=135 Identities=11% Similarity=0.062 Sum_probs=69.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHc--------CCccCh-----hhHHHHHHHHHhcCChH---HHHHHHHHHHhcCC
Q 047992 226 WNSMISGYFQIGENDEAHRLFDKMCRE--------EIKLGV-----VTFNILIRSYNQLGQCD---VAMEMVKRMESLGI 289 (868)
Q Consensus 226 ~~~li~~~~~~g~~~~A~~l~~~m~~~--------g~~p~~-----~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~ 289 (868)
||.-.+.+.+..++++|...+++..+. ...|+. .+...++.+|...+..+ +|.++++.+.....
T Consensus 39 yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~ 118 (278)
T PF08631_consen 39 YNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYG 118 (278)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCC
Confidence 444444444433666666555554322 122222 35666777777776654 45555556644432
Q ss_pred CCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcccHHHHHHHHhch--hhHHHHHHHHHHHHHhCCCCC
Q 047992 290 TPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISACTDL--KALAMGMEIHSLAVKMGFTDD 362 (868)
Q Consensus 290 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~--~~~~~a~~i~~~~~~~g~~~~ 362 (868)
. ....+-.-+..+.+.++.+++.+.+.+|... +.-....+..++...... .....+...+..++...+.+.
T Consensus 119 ~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~ 191 (278)
T PF08631_consen 119 N-KPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSS 191 (278)
T ss_pred C-CcHHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCC
Confidence 2 3445555566666688888888888888754 332334455555544222 122334444444444433333
|
It is also involved in sporulation []. |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=90.51 E-value=22 Score=41.39 Aligned_cols=47 Identities=15% Similarity=0.177 Sum_probs=26.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCccChhhHHHHHHHHHhc
Q 047992 224 VAWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQL 271 (868)
Q Consensus 224 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~ 271 (868)
..--++|--+.+.|.+++|.++..+... ........+...+..|...
T Consensus 112 ~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 112 DPIWALIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp EEHHHHHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTT
T ss_pred CccHHHHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhC
Confidence 3344667777788888888887744432 2334445555556665553
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=90.39 E-value=5 Score=43.54 Aligned_cols=145 Identities=12% Similarity=0.039 Sum_probs=74.3
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHH--
Q 047992 578 LHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEE-- 655 (868)
Q Consensus 578 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~e-- 655 (868)
+..+.+.-+++-++.++ +.||-.+-..+| |--.+.-+.|+..+|++..+.- . ..|++....+.
T Consensus 180 RERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAg-----E-------~~lg~s~~~~~~g 244 (539)
T PF04184_consen 180 RERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAG-----E-------ASLGKSQFLQHHG 244 (539)
T ss_pred hcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHH-----H-------Hhhchhhhhhccc
Confidence 34455666666666666 667765544333 3334455677777777654410 0 01111111100
Q ss_pred -HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC--CchhHHHHHHHHhhcCCChhHHHHHHHHHhc
Q 047992 656 -AMEFIEDMPIEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPG--DVLIQRLILQIYAICGKPEDALKVRKLEREN 732 (868)
Q Consensus 656 -A~~~i~~~~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~--~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 732 (868)
..+.+.+-..+|-..+=.-|...+++.|..++|.+.++.+++..|. +-+.+..|.+.|-..+++.|+..+..+=.+-
T Consensus 245 ~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 245 HFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred chhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 1111111112222333344555566677777777777777766553 4455666666777777777777766554433
Q ss_pred CCCCC
Q 047992 733 TRRNS 737 (868)
Q Consensus 733 ~~~k~ 737 (868)
...|.
T Consensus 325 ~lpkS 329 (539)
T PF04184_consen 325 SLPKS 329 (539)
T ss_pred cCCch
Confidence 33333
|
The molecular function of this protein is uncertain. |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=90.35 E-value=0.037 Score=50.75 Aligned_cols=76 Identities=12% Similarity=0.166 Sum_probs=39.3
Q ss_pred hhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCceecHHHHHHHHhcCChHHHHHHHHH
Q 047992 513 LVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMSSKDIITWNSLICGYVLHGFWHAALDLFDQ 591 (868)
Q Consensus 513 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~ 591 (868)
.+......+....+.+.+...+..+.+.|+.+|++.+..+...+.++.... .-...++..+-++|.+++|.-++.+
T Consensus 20 ~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a~~Ly~~ 95 (143)
T PF00637_consen 20 RNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEAVYLYSK 95 (143)
T ss_dssp TT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHHHHHHHH
Confidence 333333344444444444445677778888888887666666666553222 3334444455555555555544443
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.33 E-value=3 Score=42.43 Aligned_cols=159 Identities=13% Similarity=-0.088 Sum_probs=104.3
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHH----HHhhhhcCCh
Q 047992 578 LHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAM----IDLYGRSGKL 653 (868)
Q Consensus 578 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~l----vd~l~r~g~~ 653 (868)
-.|+..+|...++++++. .+.|-..+.-.=.+|...|..+.-+..++.+... ..|+...|+-+ .-.|...|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 367788888888988874 4446677777778899999998888888887763 35555444433 2345578889
Q ss_pred HHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhccCC----CCchhHHHHHHHHhhcCCChhHHHHHH
Q 047992 654 EEAMEFIEDM-PIEPDSS-IWEALLTACRIHGNIDLAVLAIERLFDLEP----GDVLIQRLILQIYAICGKPEDALKVRK 727 (868)
Q Consensus 654 ~eA~~~i~~~-~~~p~~~-~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p----~~~~~~~~l~~~y~~~g~~~~a~~~~~ 727 (868)
++|++.-++. .+.|... .-.++.......|+..+|.+..++--..=. --+.+|-.-+-.|...+.++.|.+++.
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999888887 5555433 445555666677888888776554322111 113445555666777788888888865
Q ss_pred HHHhcCCCCCCc
Q 047992 728 LERENTRRNSFG 739 (868)
Q Consensus 728 ~m~~~~~~k~~g 739 (868)
.---+.+.|.-+
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 443334444444
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.14 E-value=2 Score=37.28 Aligned_cols=53 Identities=23% Similarity=0.204 Sum_probs=36.3
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCChHHHHHHHHHhhh
Q 047992 575 GYVLHGFWHAALDLFDQMKSFGLKP-NRGTFLSIILAHSLAGMVDLGKKVFCSITE 629 (868)
Q Consensus 575 ~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 629 (868)
+.+..|+.+.|++.|.+.+. +-| +...|+.-..++.-.|++++|+.-++...+
T Consensus 52 alaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 56667777777777777776 454 346677777777777777777766666555
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=90.01 E-value=16 Score=39.04 Aligned_cols=24 Identities=13% Similarity=0.250 Sum_probs=13.8
Q ss_pred hhHHHHHHhcCCHHHHHHHHHhcc
Q 047992 433 NVLISGYIQNGNEDEAVDLFQRMG 456 (868)
Q Consensus 433 ~~li~~~~~~g~~~~A~~~f~~m~ 456 (868)
.+++.++.-.|+.+.|.+..++|.
T Consensus 309 ATl~Ea~vL~~d~~ka~~a~e~~~ 332 (374)
T PF13281_consen 309 ATLLEASVLAGDYEKAIQAAEKAF 332 (374)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHh
Confidence 455555555566666666666554
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=89.42 E-value=2.9 Score=46.82 Aligned_cols=157 Identities=15% Similarity=0.076 Sum_probs=98.4
Q ss_pred cHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHH-----HHHHHHH-Hhhc---cCChHHHHHHHHHhhhhcCCCCChh
Q 047992 569 WNSLICGYVLHGFWHAALDLFDQMKSFG-LKPNRG-----TFLSIIL-AHSL---AGMVDLGKKVFCSITECYQIIPMIE 638 (868)
Q Consensus 569 ~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~-----t~~~ll~-a~~~---~g~~~~a~~~~~~m~~~~~~~p~~~ 638 (868)
...+++..+-+|+-+.+++++.+..+.+ ++-.-. +|..++. .|.. ...++.+.+++..+.+.| |+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y---P~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY---PNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC---CCcH
Confidence 4567777888999999999998876532 221111 1222222 3332 556778888888888765 4433
Q ss_pred HHHHH-HHhhhhcCChHHHHHHHHhCCC-C-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhH-HHHH
Q 047992 639 HYSAM-IDLYGRSGKLEEAMEFIEDMPI-E-----PDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQ-RLIL 710 (868)
Q Consensus 639 ~y~~l-vd~l~r~g~~~eA~~~i~~~~~-~-----p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~-~~l~ 710 (868)
.|..+ ..++...|++++|.+.++++-. + -....+--+...+....|++.|...+.++.+...-..+.| ...+
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a 347 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 33222 3456668899999999886521 1 1122333345556678889999999999888776655554 4556
Q ss_pred HHHhhcCCChhHHHHHHH
Q 047992 711 QIYAICGKPEDALKVRKL 728 (868)
Q Consensus 711 ~~y~~~g~~~~a~~~~~~ 728 (868)
-.|...|+-+++.+.++.
T Consensus 348 ~c~~~l~~~~~~~~~~~~ 365 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKE 365 (468)
T ss_pred HHHHhhccchhhhhhHHH
Confidence 677788888666554333
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.37 E-value=21 Score=35.51 Aligned_cols=158 Identities=18% Similarity=0.160 Sum_probs=96.1
Q ss_pred HhcCCHHHHHHHHhcCCCCCce------ecHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCH--HHHHHHHHHhhc---
Q 047992 546 AKSGNIVYSRTIFDGMSSKDII------TWNSLICGYVLHGFWHAALDLFDQMKSF-GLKPNR--GTFLSIILAHSL--- 613 (868)
Q Consensus 546 ~k~g~~~~A~~~f~~~~~~d~~------~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~--~t~~~ll~a~~~--- 613 (868)
.+.|++++|.+.|+.+....+. +--.++-++-+.|++++|+..+++.... +-.||. +.|...|+-+..
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~ 124 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDD 124 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCc
Confidence 3678999999999988754322 2233455666788999999999988772 333332 444444442222
Q ss_pred -cCCh---HHHHHHHHHhhhhcCCCC---Ch------------hHHHHHHHhhhhcCChHHHHHHHHhC----CCCCCHH
Q 047992 614 -AGMV---DLGKKVFCSITECYQIIP---MI------------EHYSAMIDLYGRSGKLEEAMEFIEDM----PIEPDSS 670 (868)
Q Consensus 614 -~g~~---~~a~~~~~~m~~~~~~~p---~~------------~~y~~lvd~l~r~g~~~eA~~~i~~~----~~~p~~~ 670 (868)
..+. .+|..-|+..+++|.-.+ +. .|=-.+...|.+-|.+.-|..-++.| |-.+-..
T Consensus 125 ~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~ 204 (254)
T COG4105 125 VTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVR 204 (254)
T ss_pred cccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchH
Confidence 2233 344455555555554432 21 12233456677888888887777776 2222211
Q ss_pred -HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 047992 671 -IWEALLTACRIHGNIDLAVLAIERLFDLEPGDV 703 (868)
Q Consensus 671 -~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~ 703 (868)
..--+..++...|-.++|..+.+-+-.-.|++.
T Consensus 205 eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 205 EALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 445567889999999999998766666666654
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=89.05 E-value=15 Score=38.19 Aligned_cols=48 Identities=17% Similarity=0.273 Sum_probs=28.3
Q ss_pred hHHHHHHHHhHHCCCCCCcchHHHHHHHhhC--CCC----hHHHHHHHHHHHHh
Q 047992 139 REVVELFFLMVQDGLFPDDFLFPKILQACGN--CGD----FEAGKLMHSLVIKL 186 (868)
Q Consensus 139 ~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~--~~~----~~~a~~~~~~~~~~ 186 (868)
++.+.+++.|.+.|++-+.++|.+.+-.... ..+ ...++.+|..|.+.
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~ 132 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKK 132 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHh
Confidence 3556777888888888887777664443332 111 33455555555554
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.59 E-value=26 Score=34.42 Aligned_cols=23 Identities=9% Similarity=0.164 Sum_probs=13.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhc
Q 047992 538 MNSLIDTYAKSGNIVYSRTIFDG 560 (868)
Q Consensus 538 ~~~Li~~y~k~g~~~~A~~~f~~ 560 (868)
++--..+|..||..+.|-..+++
T Consensus 94 ~eKAs~lY~E~GspdtAAmaleK 116 (308)
T KOG1585|consen 94 YEKASELYVECGSPDTAAMALEK 116 (308)
T ss_pred HHHHHHHHHHhCCcchHHHHHHH
Confidence 44455566666666665554443
|
|
| >KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.30 E-value=11 Score=42.62 Aligned_cols=100 Identities=20% Similarity=0.298 Sum_probs=67.2
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhH-HHHHHHhhhhc
Q 047992 575 GYVLHGFWHAALDLFDQMKSFGLKPNRG---TFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEH-YSAMIDLYGRS 650 (868)
Q Consensus 575 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~---t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~-y~~lvd~l~r~ 650 (868)
.|-..+..+.|++.|++.-+ +.|+.. .+..+|.|-.+ .|+.-.+ ..+ =-.+-.++||.
T Consensus 296 ~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG~---------~Fens~E-------lq~IgmkLn~LlgrK 357 (1226)
T KOG4279|consen 296 NYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAGE---------HFENSLE-------LQQIGMKLNSLLGRK 357 (1226)
T ss_pred CCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhhh---------hccchHH-------HHHHHHHHHHHhhcc
Confidence 44555667788899998887 788763 34444443221 1221111 001 12345678999
Q ss_pred CChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 047992 651 GKLEEAMEFIEDMPIEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGD 702 (868)
Q Consensus 651 g~~~eA~~~i~~~~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~ 702 (868)
|.++.-.++++- .+.+++....+|+..|.+++++++++.|..
T Consensus 358 G~leklq~YWdV----------~~y~~asVLAnd~~kaiqAae~mfKLk~P~ 399 (1226)
T KOG4279|consen 358 GALEKLQEYWDV----------ATYFEASVLANDYQKAIQAAEMMFKLKPPV 399 (1226)
T ss_pred chHHHHHHHHhH----------HHhhhhhhhccCHHHHHHHHHHHhccCCce
Confidence 999988887763 356778888899999999999999999854
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=88.17 E-value=0.97 Score=32.75 Aligned_cols=36 Identities=22% Similarity=0.207 Sum_probs=28.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHH
Q 047992 675 LLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLIL 710 (868)
Q Consensus 675 ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~ 710 (868)
|.-++.+.|+++.|.+..+.+++++|+|..+-.+..
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~ 42 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKE 42 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence 455788999999999999999999999876655543
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=87.99 E-value=50 Score=36.98 Aligned_cols=125 Identities=11% Similarity=0.090 Sum_probs=81.7
Q ss_pred chHHHHHHHHhCCChhHHHHHHHHHhhcCCCCCcc-cHHHHHHHHhccCChHHHHHHHHHhhhcCCCChhhhhHHHHHH-
Q 047992 24 FRDTHLDFLCGNGRLNEAITVLDSIATQGAKVRRN-TYINLLQACIDSNSIHLARKLHAFLNLVTEIDVFVKTKLLSVY- 101 (868)
Q Consensus 24 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~li~~~- 101 (868)
.|+.++.---.....+.+...++.++.. -|.-. -|......=.+.|..+.+..++++-..+++.+..++.......
T Consensus 47 ~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~ 124 (577)
T KOG1258|consen 47 AWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLK 124 (577)
T ss_pred chHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 4666665444444444455556666543 22222 2222323334567888888888887777777877777766654
Q ss_pred HhcCChhHHHHHHhhcCC------CCceeHHHHHHHHHhCCChhHHHHHHHHhHH
Q 047992 102 AKCGCLDDAREVFEDMRE------RNLYTWSAMIGAYSRDQRWREVVELFFLMVQ 150 (868)
Q Consensus 102 ~~~g~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 150 (868)
...|+.+.-+..|+.... ....-|...|.--..++++.....+|++.++
T Consensus 125 n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 125 NNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILE 179 (577)
T ss_pred ccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 345778888888887643 2334588888888888999999999999876
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=87.91 E-value=1.1 Score=31.06 Aligned_cols=33 Identities=24% Similarity=0.332 Sum_probs=24.8
Q ss_pred ecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 047992 568 TWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRG 602 (868)
Q Consensus 568 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 602 (868)
.|..+...|...|++++|+++|++.++ ..||..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~--~~P~~~ 35 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA--LDPDDP 35 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCCH
Confidence 466677788888888888888888887 567654
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=87.73 E-value=0.82 Score=30.03 Aligned_cols=27 Identities=22% Similarity=0.250 Sum_probs=17.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcc
Q 047992 672 WEALLTACRIHGNIDLAVLAIERLFDL 698 (868)
Q Consensus 672 w~~ll~a~~~~~~~~~a~~~~~~~~~l 698 (868)
|..|...|...|+++.|+.++++++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 556666777777777777777775443
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=87.60 E-value=3.1 Score=38.09 Aligned_cols=52 Identities=21% Similarity=0.121 Sum_probs=33.0
Q ss_pred hcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHHhc
Q 047992 681 IHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLEREN 732 (868)
Q Consensus 681 ~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 732 (868)
.+++.+.++..+.-+.-+.|+.+..-..-++++...|+|.||.++.+.+.++
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 4556666666666666666666666666666666666666666666555443
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=87.48 E-value=3.8 Score=41.77 Aligned_cols=112 Identities=17% Similarity=0.141 Sum_probs=64.5
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCC
Q 047992 574 CGYVLHGFWHAALDLFDQMKSFGLKP-NRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGK 652 (868)
Q Consensus 574 ~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~ 652 (868)
.-|.++|.+++|++.|.+... +.| |.+++..-..||.+...+..|..-.+....- -...+.+|.|
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL---------d~~Y~KAYSR--- 170 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL---------DKLYVKAYSR--- 170 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh---------hHHHHHHHHH---
Confidence 346677777777777777666 566 6677766666665554444333222221110 0011222222
Q ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHH
Q 047992 653 LEEAMEFIEDMPIEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKV 725 (868)
Q Consensus 653 ~~eA~~~i~~~~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~ 725 (868)
-..|-...|+.++|.+-+|.+++|+|++- -|-.+|++..-..|+.-+
T Consensus 171 ----------------------R~~AR~~Lg~~~EAKkD~E~vL~LEP~~~----ELkK~~a~i~Sl~E~~I~ 217 (536)
T KOG4648|consen 171 ----------------------RMQARESLGNNMEAKKDCETVLALEPKNI----ELKKSLARINSLRERKIA 217 (536)
T ss_pred ----------------------HHHHHHHHhhHHHHHHhHHHHHhhCcccH----HHHHHHHHhcchHhhhHH
Confidence 23333456788889999999999999853 455566665555555444
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.20 E-value=36 Score=34.43 Aligned_cols=147 Identities=18% Similarity=0.150 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHhhh--------------------hc-----CCCCCh
Q 047992 583 HAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITE--------------------CY-----QIIPMI 637 (868)
Q Consensus 583 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~--------------------~~-----~~~p~~ 637 (868)
.+|+++|--+.+. +--.++-.-++.+....-+..+|-.+|+...- .| +..-++
T Consensus 150 ~KA~ELFayLv~h--kgk~v~~~~~ie~lwpe~D~kka~s~lhTtvyqlRKaLs~L~~ne~vts~d~~Ykld~~~~k~Dv 227 (361)
T COG3947 150 RKALELFAYLVEH--KGKEVTSWEAIEALWPEKDEKKASSLLHTTVYQLRKALSRLNANEAVTSQDRKYKLDAGLPKYDV 227 (361)
T ss_pred hHHHHHHHHHHHh--cCCcccHhHHHHHHccccchhhHHHHHHHHHHHHHHHhchhccCceEEEcCCceEEecCCccccH
Confidence 5677777776663 22233444455555555555555555543211 01 112233
Q ss_pred hHHHHHHHhhh-hcCChHHHHHHHHhCC--CCC--------C-----HHHHHHHH----HHHHhcCCHHHHHHHHHHHhc
Q 047992 638 EHYSAMIDLYG-RSGKLEEAMEFIEDMP--IEP--------D-----SSIWEALL----TACRIHGNIDLAVLAIERLFD 697 (868)
Q Consensus 638 ~~y~~lvd~l~-r~g~~~eA~~~i~~~~--~~p--------~-----~~~w~~ll----~a~~~~~~~~~a~~~~~~~~~ 697 (868)
.-|-..+.-.. +.-.++++.+++.... +-| | ..++..++ .+|...|++..|.+..++++.
T Consensus 228 ~e~es~~rqi~~inltide~kelv~~ykgdyl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~lt 307 (361)
T COG3947 228 QEYESLARQIEAINLTIDELKELVGQYKGDYLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALT 307 (361)
T ss_pred HHHHHHhhhhhccccCHHHHHHHHHHhcCCcCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhh
Confidence 34444433222 2345677777776651 111 1 12444444 467889999999999999999
Q ss_pred cCCCCchhHHHHHHHHhhcCCChhHHHHHHHHHh
Q 047992 698 LEPGDVLIQRLILQIYAICGKPEDALKVRKLERE 731 (868)
Q Consensus 698 l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 731 (868)
++|-+...+-.|.++|+..|+--+|.+-+..|.+
T Consensus 308 ldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 308 LDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred cChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 9999999999999999999998888888777653
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=87.14 E-value=0.028 Score=51.59 Aligned_cols=85 Identities=14% Similarity=0.131 Sum_probs=58.7
Q ss_pred HHHHhhCCCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHcCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHH
Q 047992 163 ILQACGNCGDFEAGKLMHSLVIKLGMSCVRRVRNSVLAVYVKCGKLIWARRFFESMDEKDGVAWNSMISGYFQIGENDEA 242 (868)
Q Consensus 163 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A 242 (868)
+++.+.+.+.+......++.+.+.+...+..+.+.++..|++.++.+...++++.... .-...++..+.+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 5666666677777777777777777667788889999999999887888887774332 4445666666777777777
Q ss_pred HHHHHHHH
Q 047992 243 HRLFDKMC 250 (868)
Q Consensus 243 ~~l~~~m~ 250 (868)
.-++.++.
T Consensus 90 ~~Ly~~~~ 97 (143)
T PF00637_consen 90 VYLYSKLG 97 (143)
T ss_dssp HHHHHCCT
T ss_pred HHHHHHcc
Confidence 66665543
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.66 E-value=2 Score=40.31 Aligned_cols=86 Identities=19% Similarity=0.109 Sum_probs=59.0
Q ss_pred hhhcCChHHHHHHHHhC--CCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCC
Q 047992 647 YGRSGKLEEAMEFIEDM--PIEP-----DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKP 719 (868)
Q Consensus 647 l~r~g~~~eA~~~i~~~--~~~p-----~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~ 719 (868)
+...|.+++|..-+..+ .++| ..+.+..-..|..+.+..+.|.....+++++.|.+-.+..-.+..|....++
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH
Confidence 34556666666665544 1111 1223333344445678888888888888899888888888888888888888
Q ss_pred hhHHHHHHHHHhc
Q 047992 720 EDALKVRKLEREN 732 (868)
Q Consensus 720 ~~a~~~~~~m~~~ 732 (868)
++|.+-++.+.+.
T Consensus 185 eealeDyKki~E~ 197 (271)
T KOG4234|consen 185 EEALEDYKKILES 197 (271)
T ss_pred HHHHHHHHHHHHh
Confidence 8888887777654
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=86.44 E-value=11 Score=34.81 Aligned_cols=52 Identities=19% Similarity=0.330 Sum_probs=32.4
Q ss_pred HHhcCChhHHHHHHHHhHhCCCCCCeeehhhHH-----HHHHhcCCHHHHHHHHHhcccCC
Q 047992 404 YCQAGYCGKAYELFIKMQESDVPPNVITWNVLI-----SGYIQNGNEDEAVDLFQRMGKND 459 (868)
Q Consensus 404 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li-----~~~~~~g~~~~A~~~f~~m~~~~ 459 (868)
+++.+..++|+.-|.++.+.|.. .|-.|. ....+.|+...|...|+++-...
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g----~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt 124 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYG----SYPVLARMRAATLLAQKGDTAAAVAAFDEIAADT 124 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCC----cchHHHHHHHHHHHhhcccHHHHHHHHHHHhccC
Confidence 45667778888888888766532 232222 23456677777777777775543
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=86.33 E-value=3.7 Score=36.90 Aligned_cols=53 Identities=11% Similarity=0.000 Sum_probs=43.3
Q ss_pred hcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHHhcC
Q 047992 681 IHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLERENT 733 (868)
Q Consensus 681 ~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 733 (868)
...+.+.++.+.+.+--+.|+.+..-..-++++...|+|+||.++.+...+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 37888888888888888888888888888888888888888888877665443
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=86.04 E-value=29 Score=32.30 Aligned_cols=133 Identities=17% Similarity=0.088 Sum_probs=58.6
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHhccCChHHHHHHHHHhhhcCCCChhhhhHHHHHHHhcCChhHHHHHHhhcCCCCce
Q 047992 44 VLDSIATQGAKVRRNTYINLLQACIDSNSIHLARKLHAFLNLVTEIDVFVKTKLLSVYAKCGCLDDAREVFEDMRERNLY 123 (868)
Q Consensus 44 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~ 123 (868)
.+..+...+++|+...+..+++.+.+.|.+....++.+ -.-++++..+...|++.-. ....+.++=-.|-.+=..
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq--~~Vi~DSk~lA~~LLs~~~---~~~~~~Ql~lDMLkRL~~ 90 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQ--YHVIPDSKPLACQLLSLGN---QYPPAYQLGLDMLKRLGT 90 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHh--hcccCCcHHHHHHHHHhHc---cChHHHHHHHHHHHHhhh
Confidence 34444455555555566666666665555443332222 1122233333333333211 112222222222222112
Q ss_pred eHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHhhCCCChHHHHHHHHHHHH
Q 047992 124 TWSAMIGAYSRDQRWREVVELFFLMVQDGLFPDDFLFPKILQACGNCGDFEAGKLMHSLVIK 185 (868)
Q Consensus 124 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 185 (868)
.+..++..+...|++-+|+++.+.... .+...-..++.+....+|...--.++.....
T Consensus 91 ~~~~iievLL~~g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 91 AYEEIIEVLLSKGQVLEALRYARQYHK----VDSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHcCC----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555666666666666666655321 1222234455555555555544445544444
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=85.74 E-value=1.2 Score=28.64 Aligned_cols=31 Identities=23% Similarity=0.449 Sum_probs=24.5
Q ss_pred ecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 047992 568 TWNSLICGYVLHGFWHAALDLFDQMKSFGLKPN 600 (868)
Q Consensus 568 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 600 (868)
+|..+...|...|++++|++.|++.++ +.|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 577788888888888888888888888 6665
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=85.44 E-value=56 Score=34.95 Aligned_cols=145 Identities=11% Similarity=-0.012 Sum_probs=73.2
Q ss_pred CceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHhhccCChHHHHHHHHHhhhh-cCCCCChhHH
Q 047992 565 DIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKP---NRGTFLSIILAHSLAGMVDLGKKVFCSITEC-YQIIPMIEHY 640 (868)
Q Consensus 565 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-~~~~p~~~~y 640 (868)
...+|..++..+.++|+++.|...+.++...+..+ +...+..-.......|+-++|...++...+. ..-.......
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~ 224 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISN 224 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccH
Confidence 34467777777777777777777777776633211 1122222333445556667777766665551 1111000001
Q ss_pred HHHHHhhhhcCChHHHHHHHHhCC-CCC----CHHHHHHHHHHHHh------cCCHHHHHHHHHHHhccCCCCchhHHHH
Q 047992 641 SAMIDLYGRSGKLEEAMEFIEDMP-IEP----DSSIWEALLTACRI------HGNIDLAVLAIERLFDLEPGDVLIQRLI 709 (868)
Q Consensus 641 ~~lvd~l~r~g~~~eA~~~i~~~~-~~p----~~~~w~~ll~a~~~------~~~~~~a~~~~~~~~~l~p~~~~~~~~l 709 (868)
..+...+. + ..+....-. ... -..++..+..-+.. +++.+.+...++++.++.|+...+|..+
T Consensus 225 ~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~ 298 (352)
T PF02259_consen 225 AELKSGLL-----E-SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSW 298 (352)
T ss_pred HHHhhccc-----c-ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHH
Confidence 10100000 0 000000000 000 01122222222333 3888999999999999999999888888
Q ss_pred HHHHhh
Q 047992 710 LQIYAI 715 (868)
Q Consensus 710 ~~~y~~ 715 (868)
+..+..
T Consensus 299 a~~~~~ 304 (352)
T PF02259_consen 299 ALFNDK 304 (352)
T ss_pred HHHHHH
Confidence 877644
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=85.05 E-value=7.8 Score=31.86 Aligned_cols=68 Identities=24% Similarity=0.269 Sum_probs=48.3
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHHhcCCC
Q 047992 656 AMEFIEDMPIEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLERENTRR 735 (868)
Q Consensus 656 A~~~i~~~~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 735 (868)
++.-+-.+..-|++.+..+-|.|||+-+|+..|.+.+|-+-..-..+...|-.+. .+++-.|.+.|+.
T Consensus 29 ~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~l------------qeikp~l~ELGI~ 96 (103)
T cd00923 29 GLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYIL------------QEIKPTLKELGIS 96 (103)
T ss_pred HHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHH------------HHHhHHHHHHCCC
Confidence 3333444567899999999999999999999999999977633322444444433 3567777777764
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=84.69 E-value=1.5 Score=28.79 Aligned_cols=26 Identities=23% Similarity=0.317 Sum_probs=18.3
Q ss_pred ecHHHHHHHHhcCChHHHHHHHHHHH
Q 047992 568 TWNSLICGYVLHGFWHAALDLFDQMK 593 (868)
Q Consensus 568 ~~~~li~~~~~~g~~~~A~~l~~~m~ 593 (868)
+|+.|...|.+.|++++|+++|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36677777777788888888777754
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.58 E-value=5.4 Score=40.49 Aligned_cols=73 Identities=19% Similarity=0.335 Sum_probs=54.4
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHh-----CCccCCcccHH
Q 047992 259 VTFNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSF-----VGVMPNGVTIT 332 (868)
Q Consensus 259 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~pd~~t~~ 332 (868)
.++..++..+..+|+.+.+.+.++++....+. |...|..+|.+|.++|+...|+..|+++.+ .|+.|...+..
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 34566667777788888888888888777655 778888888888888888888888887754 45666554433
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=84.19 E-value=55 Score=33.79 Aligned_cols=235 Identities=11% Similarity=0.021 Sum_probs=107.5
Q ss_pred ChhhhhHHHHHHHhcCChhHHHHHHhhcCCCCceeHHHHHHHHHhCCCh----hHHHHHHHHhHHCCCCCCcchHHHHHH
Q 047992 90 DVFVKTKLLSVYAKCGCLDDAREVFEDMRERNLYTWSAMIGAYSRDQRW----REVVELFFLMVQDGLFPDDFLFPKILQ 165 (868)
Q Consensus 90 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~----~~a~~l~~~m~~~g~~p~~~t~~~ll~ 165 (868)
|..+.-..+..+.+.|..+-...+..-...+|...-...+.++.+-|+. .+++.++..+... .|+...-.+.+.
T Consensus 36 d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~ 113 (280)
T PRK09687 36 NSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAIN 113 (280)
T ss_pred CHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHH
Confidence 3334444444444444322222222222233444334444555555543 3455555555322 344444444455
Q ss_pred HhhCCCChH--HHHHHHHHHHHhCCCCCcchHHHHHHHHHHcCChHHHHHHHhhcCCCChhhHHHHHHHHHhcC-ChhHH
Q 047992 166 ACGNCGDFE--AGKLMHSLVIKLGMSCVRRVRNSVLAVYVKCGKLIWARRFFESMDEKDGVAWNSMISGYFQIG-ENDEA 242 (868)
Q Consensus 166 ~~~~~~~~~--~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g-~~~~A 242 (868)
+++..+... ............-.+++..+.-..+.++.+.|+.+....+..-+..+|...-...+.++.+.+ ....+
T Consensus 114 aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~ 193 (280)
T PRK09687 114 ATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDI 193 (280)
T ss_pred HHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHH
Confidence 544433211 011122222222224455666666666666666444444444444445444444445555432 23455
Q ss_pred HHHHHHHHHcCCccChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047992 243 HRLFDKMCREEIKLGVVTFNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFV 322 (868)
Q Consensus 243 ~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 322 (868)
...+..+.. .++..+-...+.++.+.|+. .|...+-...+.+ + ..-..+.++...|.. +|+..+.++...
T Consensus 194 ~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~ 263 (280)
T PRK09687 194 REAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK 263 (280)
T ss_pred HHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh
Confidence 555555553 45666666666677776663 3444444433321 1 233455555565653 466666655432
Q ss_pred CccCCcccHHHHHHHH
Q 047992 323 GVMPNGVTITSAISAC 338 (868)
Q Consensus 323 g~~pd~~t~~~ll~a~ 338 (868)
.||...-...+.+|
T Consensus 264 --~~d~~v~~~a~~a~ 277 (280)
T PRK09687 264 --FDDNEIITKAIDKL 277 (280)
T ss_pred --CCChhHHHHHHHHH
Confidence 23444444444333
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=84.15 E-value=1.1e+02 Score=37.36 Aligned_cols=84 Identities=12% Similarity=0.083 Sum_probs=40.3
Q ss_pred HHHHhcCChhHHHHHHHHhhcCCCCCCHHh--HHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 047992 473 AGYQQLGQKNNALGVFRKMQSSCFYPNCVT--ILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGN 550 (868)
Q Consensus 473 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~ 550 (868)
.+|..+|++.+|+.+..+|.. .-|... -..+.+-+...+..-.|-++...... | ..--+..|++.-.
T Consensus 973 ~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s-----d---~~~av~ll~ka~~ 1041 (1265)
T KOG1920|consen 973 KAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYLS-----D---PEEAVALLCKAKE 1041 (1265)
T ss_pred HHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc-----C---HHHHHHHHhhHhH
Confidence 344455667777777666632 111111 12233333333443333333322211 1 1233456677777
Q ss_pred HHHHHHHHhcCCCCCce
Q 047992 551 IVYSRTIFDGMSSKDII 567 (868)
Q Consensus 551 ~~~A~~~f~~~~~~d~~ 567 (868)
+++|.++-......|.+
T Consensus 1042 ~~eAlrva~~~~~~d~i 1058 (1265)
T KOG1920|consen 1042 WEEALRVASKAKRDDII 1058 (1265)
T ss_pred HHHHHHHHHhcccchHH
Confidence 88888777665544443
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=83.11 E-value=9.8 Score=31.68 Aligned_cols=68 Identities=25% Similarity=0.250 Sum_probs=43.7
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHHhcCCC
Q 047992 656 AMEFIEDMPIEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLERENTRR 735 (868)
Q Consensus 656 A~~~i~~~~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 735 (868)
++.-+-.+..-|++.+..+.|.|||+-+|+..|.+.+|-+-..-.+....|-.+. .+++-.+.+.||.
T Consensus 32 glN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l------------qElkPtl~ELGI~ 99 (108)
T PF02284_consen 32 GLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL------------QELKPTLEELGIP 99 (108)
T ss_dssp HHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH------------HHHHHHHHHHT--
T ss_pred HHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH------------HHHhhHHHHhCCC
Confidence 3333444567799999999999999999999999999988654433333444432 3567777777774
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=82.61 E-value=41 Score=31.23 Aligned_cols=129 Identities=14% Similarity=0.067 Sum_probs=85.5
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHH--HHhhhhcCC
Q 047992 576 YVLHGFWHAALDLFDQMKSFGLKPNRG-TFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAM--IDLYGRSGK 652 (868)
Q Consensus 576 ~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~l--vd~l~r~g~ 652 (868)
+++.|..++|+.-|.++.+.|...-.+ .-.-......+.|+..+|..+|+.+-.+..++--..-..-+ .-+|.-.|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 567788888888888888876553322 22223344678899999999999887764442222111111 235667899
Q ss_pred hHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchh
Q 047992 653 LEEAMEFIEDMPIEPDS---SIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLI 705 (868)
Q Consensus 653 ~~eA~~~i~~~~~~p~~---~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~ 705 (868)
+++-...++....+.++ ..-.+|.-+-.+.|++..|..-++.+.. |.+.|.+
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprn 202 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRN 202 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHH
Confidence 99888888877433332 3556677777889999999999998877 4433333
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=82.18 E-value=47 Score=34.51 Aligned_cols=92 Identities=17% Similarity=0.182 Sum_probs=58.3
Q ss_pred HHHHHHHHhcCCC-------CCceecHHHHHHHHhcCC----hHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhc-cCC-
Q 047992 551 IVYSRTIFDGMSS-------KDIITWNSLICGYVLHGF----WHAALDLFDQMKSFGLKPNR-GTFLSIILAHSL-AGM- 616 (868)
Q Consensus 551 ~~~A~~~f~~~~~-------~d~~~~~~li~~~~~~g~----~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~-~g~- 616 (868)
+..|..+|+.|.+ ++-.++.+|+.. ..+. .+.+...|+.+...|+..+. .-+++-+-+... ...
T Consensus 119 ~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~ 196 (297)
T PF13170_consen 119 IQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQE 196 (297)
T ss_pred HHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchH
Confidence 4567777887764 233445555433 2222 35677888888888988855 455554444432 222
Q ss_pred -hHHHHHHHHHhhhhcCCCCChhHHHHHHH
Q 047992 617 -VDLGKKVFCSITECYQIIPMIEHYSAMID 645 (868)
Q Consensus 617 -~~~a~~~~~~m~~~~~~~p~~~~y~~lvd 645 (868)
+.....+++.+.+. ++++...||..+.=
T Consensus 197 ~v~r~~~l~~~l~~~-~~kik~~~yp~lGl 225 (297)
T PF13170_consen 197 KVARVIELYNALKKN-GVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHc-CCccccccccHHHH
Confidence 45778888888874 99999999876543
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=81.95 E-value=1.1e+02 Score=35.71 Aligned_cols=88 Identities=13% Similarity=0.043 Sum_probs=44.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCccCCcccHHHHHHHHhchhhHHHHHHHHHHHHHhC-CCCCccHHHHHHHHHHc--
Q 047992 299 MISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLAVKMG-FTDDVLVGNSLINMYSK-- 375 (868)
Q Consensus 299 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g-~~~~~~~~~~li~~y~~-- 375 (868)
....+.-.|+++.|++.+-+ ..+...|.+.+...+..+.-+.-..... ..++... -.+...-+..||..|.+
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F 338 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSF 338 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTT
T ss_pred HHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHH
Confidence 44566778999999999877 2455566777776666654433322221 1111111 11112446678888876
Q ss_pred -CCCHHHHHHHHHhcCC
Q 047992 376 -CEELEAAERVFDMIKD 391 (868)
Q Consensus 376 -~g~~~~A~~vf~~~~~ 391 (868)
..+..+|...|-.+..
T Consensus 339 ~~td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 339 EITDPREALQYLYLICL 355 (613)
T ss_dssp TTT-HHHHHHHHHGGGG
T ss_pred hccCHHHHHHHHHHHHH
Confidence 4678888888877664
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=81.79 E-value=1.1e+02 Score=35.70 Aligned_cols=125 Identities=16% Similarity=0.231 Sum_probs=58.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHc----CCccChhhHHHH-HHHHHhcCChHHHHHHHHHHHhcC---CCCCeeeHHHHH
Q 047992 229 MISGYFQIGENDEAHRLFDKMCRE----EIKLGVVTFNIL-IRSYNQLGQCDVAMEMVKRMESLG---ITPDVFTWTCMI 300 (868)
Q Consensus 229 li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~~~li 300 (868)
++..+.+.+... |...+++..+. +..+-...|..+ +..+...++...|.+.++.+...- ..|-...+-.++
T Consensus 106 l~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~ 184 (608)
T PF10345_consen 106 LARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLS 184 (608)
T ss_pred HHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHH
Confidence 344444444444 66666665432 112222333333 223333367777777777665432 222333444444
Q ss_pred HHHH--hcCChhHHHHHHHHHHhCCc---------cCCcccHHHHHHHHh--chhhHHHHHHHHHHH
Q 047992 301 SGFA--QNGRTSQALDLFKEMSFVGV---------MPNGVTITSAISACT--DLKALAMGMEIHSLA 354 (868)
Q Consensus 301 ~~~~--~~g~~~~A~~l~~~m~~~g~---------~pd~~t~~~ll~a~~--~~~~~~~a~~i~~~~ 354 (868)
.+.. +.+..+++++.++++..... .|-..++..++..|+ ..|+++.+.+.+..+
T Consensus 185 ~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 185 EALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4443 33455666666666532221 223344555555553 344544555444433
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=81.04 E-value=1.8 Score=44.03 Aligned_cols=80 Identities=20% Similarity=0.125 Sum_probs=65.2
Q ss_pred HhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhH
Q 047992 645 DLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDA 722 (868)
Q Consensus 645 d~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a 722 (868)
.-|.++|+++||++.+.+. ...| |++.+..-..||.+.+.+..|+.-.+.++.|+-...-+|.-.+..-.+.|+.+||
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EA 184 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEA 184 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 4466789999999998765 6667 7788888888999999999999999999999887777777766666777777777
Q ss_pred HH
Q 047992 723 LK 724 (868)
Q Consensus 723 ~~ 724 (868)
.+
T Consensus 185 Kk 186 (536)
T KOG4648|consen 185 KK 186 (536)
T ss_pred HH
Confidence 65
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=80.96 E-value=4.3 Score=41.27 Aligned_cols=59 Identities=25% Similarity=0.176 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHH
Q 047992 671 IWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLE 729 (868)
Q Consensus 671 ~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 729 (868)
..+.|-.++...++++.|.++.+.++.+.|+++.-+--.+-+|+..|.|..|..=.+.-
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~f 241 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYF 241 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 35667778889999999999999999999999999999999999999999999865544
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=80.83 E-value=39 Score=29.81 Aligned_cols=64 Identities=14% Similarity=0.119 Sum_probs=35.5
Q ss_pred eHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcccHHHHHHHHhchhhHHHHHHHHHHHHHhCC
Q 047992 295 TWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLAVKMGF 359 (868)
Q Consensus 295 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~ 359 (868)
.....+..+.++|.-++-.++++++.. +-.+++.....+..||.+.|+..++.+++..+-+.|+
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 344455566666666666666666643 3345666666666777777777777776666666653
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.83 E-value=1.2e+02 Score=35.32 Aligned_cols=74 Identities=14% Similarity=0.052 Sum_probs=38.3
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCcc---ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcC
Q 047992 231 SGYFQIGENDEAHRLFDKMCREEIKL---GVVTFNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNG 307 (868)
Q Consensus 231 ~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 307 (868)
.-+.+.+.+++|+++.+... |..| ....+...|..+.-.|++++|-...-.|... +..-|.-.+..+...+
T Consensus 364 ~Wll~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~ 437 (846)
T KOG2066|consen 364 DWLLEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELD 437 (846)
T ss_pred HHHHHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhcccc
Confidence 33455566666666554332 2223 2345555666666666666666666555544 4444444444444444
Q ss_pred Chh
Q 047992 308 RTS 310 (868)
Q Consensus 308 ~~~ 310 (868)
+..
T Consensus 438 ~l~ 440 (846)
T KOG2066|consen 438 QLT 440 (846)
T ss_pred ccc
Confidence 433
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=80.30 E-value=2.7 Score=26.77 Aligned_cols=31 Identities=29% Similarity=0.567 Sum_probs=22.6
Q ss_pred ecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 047992 568 TWNSLICGYVLHGFWHAALDLFDQMKSFGLKPN 600 (868)
Q Consensus 568 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 600 (868)
.|..+...|...|++++|++.|++..+ +.|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~--l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE--LDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH--HCcC
Confidence 356677778888888888888888877 5564
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 66.0 bits (159), Expect = 5e-11
Identities = 16/206 (7%), Positives = 58/206 (28%), Gaps = 7/206 (3%)
Query: 312 ALDLFKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLIN 371
A L P + + +L + + + +
Sbjct: 76 AGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFK 135
Query: 372 MYSKCEELEAAERVFDMIKDK-------DVYSWNSMIAGYCQAGYCGKAYELFIKMQESD 424
++L A + + + + +N+++ G+ + G + + ++++
Sbjct: 136 CCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG 195
Query: 425 VPPNVITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNA 484
+ P+++++ + + + ++ + +K L++ +
Sbjct: 196 LTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAV 255
Query: 485 LGVFRKMQSSCFYPNCVTILSVLPAC 510
V P V +L
Sbjct: 256 HKVKPTFSLPPQLPPPVNTSKLLRDV 281
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 62.5 bits (150), Expect = 5e-10
Identities = 15/121 (12%), Positives = 43/121 (35%), Gaps = 4/121 (3%)
Query: 222 DGVAWNSMISGYFQIGENDEAHRLFDKMCREEIK---LGVVTFNILIRSYNQLGQCDVAM 278
+ + AH L + K L + +N ++ + + G +
Sbjct: 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELV 185
Query: 279 EMVKRMESLGITPDVFTWTCMISGFAQNGRTSQAL-DLFKEMSFVGVMPNGVTITSAISA 337
++ ++ G+TPD+ ++ + + + + + ++MS G+ + +S
Sbjct: 186 YVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSE 245
Query: 338 C 338
Sbjct: 246 E 246
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 60.6 bits (145), Expect = 2e-09
Identities = 19/205 (9%), Positives = 62/205 (30%), Gaps = 8/205 (3%)
Query: 155 PDDFLFPKILQACGNCGDFEAGKLMHSLVIKLGMSCVRRVRNSVLAVYVKCGKLIWARRF 214
P + ++LQ + + + +S ++ + + +L A
Sbjct: 90 PWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHL 149
Query: 215 FESMDEK-------DGVAWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTFNILIRS 267
+ +N+++ G+ + G E + + + ++++ ++
Sbjct: 150 LVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQC 209
Query: 268 YNQLGQCDVAME-MVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMP 326
+ Q +E +++M G+ ++S + + S +P
Sbjct: 210 MGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLP 269
Query: 327 NGVTITSAISACTDLKALAMGMEIH 351
V + + ++H
Sbjct: 270 PPVNTSKLLRDVYAKDGRVSYPKLH 294
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 59.1 bits (141), Expect = 6e-09
Identities = 15/178 (8%), Positives = 50/178 (28%), Gaps = 7/178 (3%)
Query: 498 PNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNI------ 551
P + +L ++ + + G + L + + + +
Sbjct: 90 PWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHL 149
Query: 552 -VYSRTIFDGMSSKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILA 610
V + +N+++ G+ G + + + +K GL P+ ++ + +
Sbjct: 150 LVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQC 209
Query: 611 HSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPIEPD 668
+ + + ++ R+ L+ + + P
Sbjct: 210 MGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQ 267
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 54.1 bits (128), Expect = 2e-07
Identities = 18/120 (15%), Positives = 43/120 (35%), Gaps = 9/120 (7%)
Query: 58 NTYINLLQACIDSNSIHLARKL----HAFLNLVTEIDVFVKTKLLSVYAKCGCLDDAREV 113
+ + C+ ++ + LA L H + + + ++ +A+ G + V
Sbjct: 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYV 187
Query: 114 FEDMRER----NLYTWSAMIGAYSR-DQRWREVVELFFLMVQDGLFPDDFLFPKILQACG 168
+++ +L +++A + R DQ + M Q+GL +L
Sbjct: 188 LFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEED 247
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 52.5 bits (124), Expect = 6e-07
Identities = 19/137 (13%), Positives = 44/137 (32%), Gaps = 9/137 (6%)
Query: 97 LLSVYAKCGCLDDAREVFEDMRER-------NLYTWSAMIGAYSRDQRWREVVELFFLMV 149
L A + + L ++A++ ++R ++E+V + F++
Sbjct: 133 FFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVK 192
Query: 150 QDGLFPDDFLFPKILQACGNCG-DFEAGKLMHSLVIKLGMSCVRRVRNSVLAVYVKCGKL 208
GL PD + LQ G D + + + G+ +L+ + +
Sbjct: 193 DAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR-ATV 251
Query: 209 IWARRFFESMDEKDGVA 225
+ A +
Sbjct: 252 LKAVHKVKPTFSLPPQL 268
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 52.1 bits (123), Expect = 7e-07
Identities = 8/102 (7%), Positives = 30/102 (29%), Gaps = 2/102 (1%)
Query: 412 KAYELFIKMQESDVPPNVITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKR--NTASWN 469
+ ++ + + A L + ++ +N
Sbjct: 110 VEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYN 169
Query: 470 SLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACA 511
+++ G+ + G + V ++ + P+ ++ + L
Sbjct: 170 AVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMG 211
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 43.7 bits (101), Expect = 3e-04
Identities = 28/241 (11%), Positives = 74/241 (30%), Gaps = 10/241 (4%)
Query: 453 QRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAY 512
+ + L+ + + + +L+ C
Sbjct: 80 EDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLL 139
Query: 513 L----VASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMSSK---- 564
+A + + HG +R L + L + N+++ +A+ G + +
Sbjct: 140 TDQLPLAHHLLVVHHGQRQKRKLLT-LDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP 198
Query: 565 DIITWNSLICGYVLHG-FWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKV 623
D++++ + + +QM GLK ++ A ++ KV
Sbjct: 199 DLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV 258
Query: 624 FCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPIEPDSSIWEALLTACRIHG 683
+ + Q+ P + + D+Y + G++ + ++ + A R+
Sbjct: 259 KPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCV 318
Query: 684 N 684
Sbjct: 319 V 319
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 58.3 bits (140), Expect = 9e-09
Identities = 89/649 (13%), Positives = 198/649 (30%), Gaps = 195/649 (30%)
Query: 135 DQRWREVVELFFLMVQDGLFPDDFLFPKILQACGNCGDFEAGKLMHSLVIKLGMSCVRRV 194
++++++ +F F D+F +C D + + S++ K + +
Sbjct: 15 QYQYKDILSVF---EDA--FVDNF----------DCKDVQ--DMPKSILSKEEIDHIIMS 57
Query: 195 RNSVLAVYVKCGKLIW---------ARRFFESMDEKDGVAW-----------NSMISGYF 234
+++V +L W ++F E + + + SM++ +
Sbjct: 58 KDAVSGTL----RLFWTLLSKQEEMVQKFVEEVLRIN-YKFLMSPIKTEQRQPSMMTRMY 112
Query: 235 QIGENDEAHR---LFDKM--CREEIKLGVVTFNILIRSYNQLGQCDVAMEMVKRMESLGI 289
I + D + +F K R + Y +L Q + L
Sbjct: 113 -IEQRDRLYNDNQVFAKYNVSRLQ-------------PYLKLRQA---------LLELRP 149
Query: 290 TPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVT-ITSAISACTDLKALAMGM 348
+V I G +G+T ALD+ M + + + C + + +
Sbjct: 150 AKNVL-----IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN--LKNCNSPETVLEML 202
Query: 349 EIHSLAVKMGFTDDVLVGNSLINMYSKCEELEAAERVFDMIKDK--------DVYSWNSM 400
+ L ++ + + N+ + ++A R K +V N+
Sbjct: 203 Q--KLLYQID-PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV--QNAK 257
Query: 401 IAGYCQAGYCGKAYELFIKM-------QESDVPPNVITWNVLISGYIQNGNEDEAVDLFQ 453
A+ L K+ Q +D T ++ + + DE L
Sbjct: 258 AW---------NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL 308
Query: 454 R---MGKND------------------KVKRNTASWNSLIAGYQQLGQKN---------N 483
+ D ++ A+W+ ++ + N
Sbjct: 309 KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD----NWKHVNCDKLTTIIESSLN 364
Query: 484 AL--GVFRKMQSSCF-YPNCVTI----LSVL-PACAYLVASNKVKEIH--GCVLRRSLES 533
L +RKM +P I LS++ V ++H V ++ ES
Sbjct: 365 VLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKES 424
Query: 534 SLPVMNSLIDTYAKSGNIVYS-RTIFDGMSSKDIITWNSLIC----GYVLHGFWHAA--L 586
++ + + ++ K N R+I D + + LI Y + H L
Sbjct: 425 TISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF---YSHIGHHL 481
Query: 587 DLFDQMKSFGLKPN-----RGTFLSIILAHS------LAGMVDLGKKVFCSITECYQ--I 633
+ + L R FL + H +++ +++ + Y+ I
Sbjct: 482 KNIEHPERMTLFRMVFLDFR--FLEQKIRHDSTAWNASGSILNTLQQL-----KFYKPYI 534
Query: 634 IPMIEHYSAMIDLYGRSGKLEEAMEFI----EDMPIEPDSSIWE-ALLT 677
Y +++ ++F+ E++ + + AL+
Sbjct: 535 CDNDPKYERLVNAI---------LDFLPKIEENLICSKYTDLLRIALMA 574
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.4 bits (122), Expect = 1e-06
Identities = 48/378 (12%), Positives = 100/378 (26%), Gaps = 133/378 (35%)
Query: 586 LDLFDQMKS--FGLKPNRGTFLSIILAHSLAGMVDLGK-------------------KVF 624
L + +++ L+P + + G++ GK K+F
Sbjct: 134 LQPYLKLRQALLELRPAKNVLI-----D---GVLGSGKTWVALDVCLSYKVQCKMDFKIF 185
Query: 625 ------CSITE---------CYQIIPM-IEHYSAMIDLYGRSGKLEEAM-EFIEDMPIEP 667
C+ E YQI P ++ R ++ + ++ P E
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245
Query: 668 ---------DSSIWEALLTACRI------HGNIDLAVLAIERLFDLEP-GDVLIQRLILQ 711
++ W A +C+I D A L+ L +
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305
Query: 712 IYAICGK------PEDALKVRKLE--------RENTRRNSFGQCWIEVKNLVYTFVTGGW 757
+ P + L R+ W K++ +T
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT------WDNWKHVNCDKLTTII 359
Query: 758 SESYSDL-------LYSWLQ------NVPENVTARSSHSGLCI-----EEEEKEEISGIH 799
S + L ++ L ++P + L + + + +
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL--------LSLIWFDVIKSDVMVV---- 407
Query: 800 SEKLALAFALIGSSQAPHTIRIVKNIRMCVHCHETAKYVSMMHHCEIFLADSKCLHHFKN 859
KL ++L+ TI I +I + + +Y +H + H+
Sbjct: 408 VNKLH-KYSLVEKQPKESTISI-PSIYLELKVKLENEYA--LH--------RSIVDHYNI 455
Query: 860 GQCSCGD---------YW 868
+ D Y+
Sbjct: 456 PKTFDSDDLIPPYLDQYF 473
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.7 bits (115), Expect = 8e-06
Identities = 77/563 (13%), Positives = 146/563 (25%), Gaps = 224/563 (39%)
Query: 5 ILTTFQQLHSLLTKK--------SNPRFR----DTHLDFLCGNGRLNEAITVLDSIATQG 52
+L Q+L + SN + R L L + + VL ++ Q
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV--QN 255
Query: 53 AKVRRNTYINLLQACIDSNSIHLARKLHAFLN----LVTEIDVFVKTKLLSVYAKCGCLD 108
AK +AF L+T V L + LD
Sbjct: 256 AKA-----------------------WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD 292
Query: 109 DAREVFEDMRERNLYTWSAMIGAYSRDQRWREVVELFFLMVQDGLFPDDFLFPKILQACG 168
EV L + P D P+ +
Sbjct: 293 HHSMTLTP----------------------DEVKSLLLKYL--DCRPQD--LPR--EVLT 324
Query: 169 NCGDFEAGKLMHSLVIKLGMSCVRRVRNSVLAVYVKCGKLIWARRFFESMDEKDGVA-WN 227
+ + +I +DG+A W+
Sbjct: 325 ----------TNPRRL----------------------SIIAESI-------RDGLATWD 345
Query: 228 SMISGYFQIGENDEAHRLFDKMCRE-EIKLGVVTFNILIRSYNQLGQCDVAMEMVKRMES 286
++ H DK+ E L V+ + +++L V
Sbjct: 346 -----NWK-------HVNCDKLTTIIESSLNVLEPAEYRKMFDRLS---VFPPSAH---- 386
Query: 287 LGITPDVFT--WTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISACTDLKAL 344
I + + W +I ++ + S V P TI+
Sbjct: 387 --IPTILLSLIWFDVIKSDVM-----VVVNKLHKYSLVEKQPKESTIS------------ 427
Query: 345 AMGMEIHSLAVKMGFTDDVLVG--NSLINMYSKCEELEAAERVFDMIKDK-DVYSWNSMI 401
I S+ +++ + S+++ Y+ + ++ D+I D Y ++
Sbjct: 428 -----IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDS----DDLIPPYLDQYFYS--- 475
Query: 402 AGYCQAGYCGKAYELFIKMQESDVPPNVITWNVLISGY-IQNGNEDEAVDLFQRMGKND- 459
I G+ ++N E + LF+ + +
Sbjct: 476 ---------------HI-------------------GHHLKNIEHPERMTLFRMVFLDFR 501
Query: 460 ----KVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNC-------VTILSVLP 508
K++ ++ +WN+ G N L + + N IL LP
Sbjct: 502 FLEQKIRHDSTAWNA-------SGSILNTLQQLKFYKPY-ICDNDPKYERLVNAILDFLP 553
Query: 509 ACAYLVASNKVKEIHGCVLRRSL 531
N + + +LR +L
Sbjct: 554 KI----EENLICSKYTDLLRIAL 572
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 56.3 bits (135), Expect = 1e-08
Identities = 35/258 (13%), Positives = 79/258 (30%), Gaps = 17/258 (6%)
Query: 233 YFQIGENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQLGQCDVAMEMVKRMESLGITPD 292
F IG + ++ + V L R+Y + V ++ +K P+
Sbjct: 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSS----APE 64
Query: 293 VFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHS 352
+ A + R + V T ++ +
Sbjct: 65 LQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASI----YFYDQNPDAA 120
Query: 353 LAVKMGFTDDVLVGNSLINMYSKCEELEAAERVFDMIKDKD-----VYSWNSMIAGYCQA 407
L + D + + + K + L+ A + ++D+D + ++
Sbjct: 121 LRT-LHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGG 179
Query: 408 GYCGKAYELFIKMQESDVPPNVITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTAS 467
AY +F +M + P ++ N + ++ G + A + Q D + +
Sbjct: 180 EKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD--SGHPET 236
Query: 468 WNSLIAGYQQLGQKNNAL 485
+L+ Q LG+
Sbjct: 237 LINLVVLSQHLGKPPEVT 254
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 45.5 bits (107), Expect = 3e-05
Identities = 38/254 (14%), Positives = 76/254 (29%), Gaps = 17/254 (6%)
Query: 478 LGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPV 537
+G + ++++ S P V AYL A K + + S L
Sbjct: 12 IGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYL-AQRKYGVVLDEIKPSS-APELQA 67
Query: 538 MNSLIDTYAKSGNIVYSRTIFDGMSSKDIITWNS---LICGYVL--HGFWHAALDLFDQM 592
+ + A D S+ + N+ L+ + AAL Q
Sbjct: 68 VRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQG 127
Query: 593 KSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGK 652
S + +DL +K + + + + + +A + L K
Sbjct: 128 DSLECMAMT------VQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEK 181
Query: 653 LEEAMEFIEDM--PIEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLIL 710
L++A ++M P + G + A ++ D + G ++
Sbjct: 182 LQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLV 241
Query: 711 QIYAICGKPEDALK 724
+ GKP +
Sbjct: 242 VLSQHLGKPPEVTN 255
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 56.0 bits (135), Expect = 3e-08
Identities = 36/279 (12%), Positives = 76/279 (27%), Gaps = 28/279 (10%)
Query: 233 YFQIGENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQLGQCDVAMEMVKRMESL----- 287
Y G+ A L K + + +L A+ ++
Sbjct: 127 YCCTGDYARAKCLLTK--EDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEK 184
Query: 288 ----------GITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISA 337
GI + + +A + +KE + V + +
Sbjct: 185 NANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEA--LMVDAKCYEAFDQLVS 242
Query: 338 CTDLKALAMGMEIHSLAVKMGFTDDV----LVGNSLINMYSKCEELEAAERVFDMIKD-- 391
L A + L +D + +N S +EL AE I
Sbjct: 243 NHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLE 302
Query: 392 KDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNVLISGYIQNGNEDEAVDL 451
K + K+ E D P N+ + + ++ ++G +++ +
Sbjct: 303 KSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLI 361
Query: 452 FQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRK 490
+ +W ++ Y + + + A F K
Sbjct: 362 SNDLVDRH--PEKAVTWLAVGIYYLCVNKISEARRYFSK 398
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 3e-04
Identities = 50/420 (11%), Positives = 105/420 (25%), Gaps = 82/420 (19%)
Query: 100 VYAKCGCLDDAREVFEDMRERNLYTWSAM--IGAYSRDQRWREVVELFFLMVQDGLFPDD 157
VY D A+E +++ + + A + + E + L D
Sbjct: 209 VYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDA 268
Query: 158 F----LFPKILQACGNCGDFEAGKLMHSLVIKLGMSCVRRVRNSVLAVYVKCGKLIWARR 213
L+ L + + + S + L S + + I
Sbjct: 269 AFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSD--LLLCKADTLFVRSRFIDVLA 326
Query: 214 FFE---SMDEKDGVAWNSMISGYFQIGENDEAHRLFDKMCREEIKLG---VVTFNILIRS 267
+D + + ++ + GE ++ + + + + + VT+ +
Sbjct: 327 ITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDL----VDRHPEKAVTWLAVGIY 382
Query: 268 YNQLGQCDVAMEMVKRMESLGITPD-VFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMP 326
Y + + A + S + P W FA G QA+ +
Sbjct: 383 YLCVNKISEARRYFSK--SSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTT-------- 432
Query: 327 NGVTITSAISACTDLKALA---MGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEELEAAE 383
A L +GM+ + + + A
Sbjct: 433 -------AARLFQGT-HLPYLFLGMQ-----------------------HMQLGNILLAN 461
Query: 384 RVFDM---IKDKDVYSWNSMIAGYCQAGYCGKAYELFIK------MQESDVPPNVITWNV 434
+ D N + A F +S+ P TW
Sbjct: 462 EYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWAN 521
Query: 435 LISGYIQNGNEDEAVDLFQRMGKNDKVKR----NTASWNSLIAGYQQLGQKNNALGVFRK 490
L Y + D A+D ++ + ++ Y A+ +
Sbjct: 522 LGHAYRKLKMYDAAIDAL------NQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHE 575
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 5e-04
Identities = 41/377 (10%), Positives = 97/377 (25%), Gaps = 72/377 (19%)
Query: 371 NMYSKCEELEAAERV----FDMIKDKDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVP 426
++ + EE + ++ + + S + + E ++
Sbjct: 244 HLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-E 302
Query: 427 PNVITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALG 486
+ + + + ++ + D N + +A + G+KN
Sbjct: 303 KSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP--YNLDVYPLHLASLHESGEKNKLYL 360
Query: 487 VFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYA 546
+ + +P + YL NK+ E +
Sbjct: 361 ISNDLVD--RHPEKAVTWLAV-GIYYL-CVNKISE--------ARRY------------- 395
Query: 547 KSGNIVYSRTIFDGMSSKDIITWNSLICGYVLH--GFWHAALDLFDQMKSFGLKP----- 599
+S++ M + W + G A+ + + L
Sbjct: 396 ------FSKSS--TMDPQFGPAWIGF--AHSFAIEGEHDQAISAYT--TAARLFQGTHLP 443
Query: 600 --NRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIP-MIEHYSAMIDLYGRSGKLEEA 656
G + H G + L + Y + + + + ++ A
Sbjct: 444 YLFLG------MQHMQLGNILLANEYL---QSSYALFQYDPLLLNELGVVAFNKSDMQTA 494
Query: 657 MEFIE-----DMPIEPDSSIWEALL----TACRIHGNIDLAVLAIERLFDLEPGDVLIQR 707
+ + + + W A A R D A+ A+ + L D +
Sbjct: 495 INHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHT 554
Query: 708 LILQIYAICGKPEDALK 724
I +Y P A+
Sbjct: 555 AIALVYLHKKIPGLAIT 571
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 2e-05
Identities = 35/279 (12%), Positives = 67/279 (24%), Gaps = 52/279 (18%)
Query: 219 DEKDGVAWNSMISGYFQIGENDEAHRLFDKMCREEIKLG---VVTFNILIRSYNQLGQCD 275
+ VA S G + + + L VV L
Sbjct: 170 TPEQVVAIASNGGGKQALETVQRLLPVLCQ----AHGLTPQQVVAIASNGGGKQALETVQ 225
Query: 276 VAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAI 335
+ ++ + + G+TP + A NG QAL+ + +
Sbjct: 226 RLLPVLCQ--AHGLTPQ------QVVAIASNGGGKQALETVQR---------------LL 262
Query: 336 SACTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEELEAAERVFD---MIKDK 392
+A + V+ S E ++ V + +
Sbjct: 263 PVLC--QAHGLT------------PQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQ 308
Query: 393 DVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNVLISGYIQNGNEDEAVDLF 452
V + S G + + + P V+ G + +
Sbjct: 309 QVVAIASNGGGKQALETVQRLLPVLCQAHGLT-PQQVVAIASHDGGKQALETVQRLLPVL 367
Query: 453 QR-MGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRK 490
+ G + + S G Q L L V +
Sbjct: 368 CQAHGLTPE---QVVAIASNGGGKQALETVQRLLPVLCQ 403
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 4e-05
Identities = 33/277 (11%), Positives = 64/277 (23%), Gaps = 52/277 (18%)
Query: 221 KDGVAWNSMISGYFQIGENDEAHRLFDKMCREEIKLG---VVTFNILIRSYNQLGQCDVA 277
+ VA S G + + + L VV L
Sbjct: 240 QQVVAIASNGGGKQALETVQRLLPVLCQ----AHGLTPQQVVAIASNSGGKQALETVQRL 295
Query: 278 MEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISA 337
+ ++ + + G+TP + A NG QAL+ + +
Sbjct: 296 LPVLCQ--AHGLTPQ------QVVAIASNGGGKQALETVQR---------------LLPV 332
Query: 338 CTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEELEAAERVFDM---IKDKDV 394
+A + V+ S E ++ V + + V
Sbjct: 333 LC--QAHGLT------------PQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQV 378
Query: 395 YSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNVLISGYIQNGNEDEAVDLFQR 454
+ S G + + + P V+ G + + +
Sbjct: 379 VAIASNGGGKQALETVQRLLPVLCQAHGLT-PEQVVAIASHDGGKQALETVQRLLPVLCQ 437
Query: 455 -MGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRK 490
G + + S G L L
Sbjct: 438 AHGLT---PQQVVAIASNGGGRPALESIVAQLSRPDP 471
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 1e-04
Identities = 34/294 (11%), Positives = 66/294 (22%), Gaps = 52/294 (17%)
Query: 221 KDGVAWNSMISGYFQIGENDEAHRLFDKMCREEIKLG---VVTFNILIRSYNQLGQCDVA 277
+ VA S G + + + L VV L
Sbjct: 70 EQVVAIASHDGGKQALETVQRLLPVLCQ----AHGLTPQQVVAIASHDGGKQALETVQRL 125
Query: 278 MEMVKRMESLGITPD-VFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPN--------G 328
+ ++ + + G+TP+ V G L + + G+ P G
Sbjct: 126 LPVLCQ--AHGLTPEQVVAIASHDGGKQALETVQALLPVLCQA--HGLTPEQVVAIASNG 181
Query: 329 VT------ITSAISACTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEELEAA 382
+ + +A + V+ S E ++
Sbjct: 182 GGKQALETVQRLLPVLC--QAHGL------------TPQQVVAIASNGGGKQALETVQRL 227
Query: 383 ERVFDM---IKDKDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNVLISGY 439
V + + V + S G + + + P V+ G
Sbjct: 228 LPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLT-PQQVVAIASNSGGK 286
Query: 440 IQNGNEDEAVDLFQRMGKNDKVKRNTAS---WNSLIAGYQQLGQKNNALGVFRK 490
+ + + S G Q L L V +
Sbjct: 287 QALETVQRLLPVLCQA-----HGLTPQQVVAIASNGGGKQALETVQRLLPVLCQ 335
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 3e-04
Identities = 26/119 (21%), Positives = 44/119 (36%), Gaps = 6/119 (5%)
Query: 373 YSKCEELEAAERVFDMIKDKDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITW 432
Y+K E E V + ++ DV S+ + Y+L + E D P +
Sbjct: 3 YNKPSETVIPESVDGLQENLDVV--VSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCL 59
Query: 433 NVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKN-NALGVFRK 490
V I ++ +E L ++ N SW ++ Y +G KN +A K
Sbjct: 60 PVHIGTLVELNKANELFYLSHKLVDLY--PSNPVSWFAVGCYYLMVGHKNEHARRYLSK 116
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 7e-04
Identities = 43/342 (12%), Positives = 95/342 (27%), Gaps = 50/342 (14%)
Query: 412 KAYELFIKMQESDVPPNVITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSL 471
K E I + N+ L + N + L + + D + +
Sbjct: 5 KPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP--FHASCLPVH 62
Query: 472 IAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSL 531
I +L + N + K+ YP+ + C YL+ +K + L ++
Sbjct: 63 IGTLVELNKANELFYLSHKLVD--LYPSNPVSWFAV-GCYYLMVGHKNEHARRY-LSKAT 118
Query: 532 E---SSLPVMNSLIDTYAKSGNI-----VYSRTIFDGMSSKDIITWNSLICGYVLH--GF 581
+ P + ++A Y + + + G
Sbjct: 119 TLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAA--QLMKGCHLPMLYI--GLEYGLTNN 174
Query: 582 WHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMV--DLGK------------KVFCSI 627
A F ++ + P G+V G+ + +I
Sbjct: 175 SKLAERFFS--QALSIAPED------PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAI 226
Query: 628 TECYQIIPMIEHYSAMIDLYGRSGKLEEAMEF----IEDMPIEPD-SSIWEALLTACRIH 682
+ + + + + K EA+++ + + P +S + A+ +
Sbjct: 227 GNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALV---LIPQNASTYSAIGYIHSLM 283
Query: 683 GNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALK 724
GN + AV L D ++ + +A
Sbjct: 284 GNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSEAYI 325
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 40.3 bits (94), Expect = 5e-04
Identities = 17/116 (14%), Positives = 30/116 (25%), Gaps = 6/116 (5%)
Query: 378 ELEAAERVFDM---IKDKDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNV 434
L + M I + S+ Q+G A+ +F + D + +
Sbjct: 2 PLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLG 60
Query: 435 LISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRK 490
L + G D A+ + D Q G+ A
Sbjct: 61 LGACRQAMGQYDLAIHSYSYGAVMD--IXEPRFPFHAAECLLQXGELAEAESGLFL 114
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 42.3 bits (99), Expect = 8e-04
Identities = 37/277 (13%), Positives = 67/277 (24%), Gaps = 53/277 (19%)
Query: 221 KDGVAWNSMISGYFQIGENDEAHRLFDKMCREEIKLG---VVTFNILIRSYNQLGQCDVA 277
VA S G + + + L VV I L
Sbjct: 224 AQVVAIASHDGGKQALETMQRLLPVLCQ----AHGLPPDQVVAIASNIGGKQALETVQRL 279
Query: 278 MEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISA 337
+ ++ + + G+TPD + A +G QAL+ + +
Sbjct: 280 LPVLCQ--AHGLTPD------QVVAIASHGGGKQALETVQR---------------LLPV 316
Query: 338 CTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEELEAAERVFD---MIKDKDV 394
+A + D V+ S E ++ V + V
Sbjct: 317 LC--QAHGLT------------PDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQV 362
Query: 395 YSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNVLISGYIQN-GNEDEAVDLFQ 453
+ S G + + + P V+ G Q + +
Sbjct: 363 VAIASNGGGKQALETVQRLLPVLCQAHGLT-PDQVVAIASN--GGKQALETVQRLLPVLC 419
Query: 454 RMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRK 490
+ + S G Q L L V +
Sbjct: 420 QAHGLT--PDQVVAIASHDGGKQALETVQRLLPVLCQ 454
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 868 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.94 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.94 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.94 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.92 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.9 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.88 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.87 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.86 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.86 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.85 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.81 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.8 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.77 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.74 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.74 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.73 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.72 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.72 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.71 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.69 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.68 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.68 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.68 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.68 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.67 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.66 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.64 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.63 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.63 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.6 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.6 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.57 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.53 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.52 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.5 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.49 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.48 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.46 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.42 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.42 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.41 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.41 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.4 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.4 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.37 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.36 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.34 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.34 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.33 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.33 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.32 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.31 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.3 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.3 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.29 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.28 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.28 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.27 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.27 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.26 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.26 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.25 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.25 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.23 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.22 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.21 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.18 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.17 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.17 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.13 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.11 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.11 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.1 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.05 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.02 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.0 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.0 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 98.99 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 98.96 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 98.95 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.94 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.92 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.9 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.87 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.86 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.83 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.82 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.82 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 98.8 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.79 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.79 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.78 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.76 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.74 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.73 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.69 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.68 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.63 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.62 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.61 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.61 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.61 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.6 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.59 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.59 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.54 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.53 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.52 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.52 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.48 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.48 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.47 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.47 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.46 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.45 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.45 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.43 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.43 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.42 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.41 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.41 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.41 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.4 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.39 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.38 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.38 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.34 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.34 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.32 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.29 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.29 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.27 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.26 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.26 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.24 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.23 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.22 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.21 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.21 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.2 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.2 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.19 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.18 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.18 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.16 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.16 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.14 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.14 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.14 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.1 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.09 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.08 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.07 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.07 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.07 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.06 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.06 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.06 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.05 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.01 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.01 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.99 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.99 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.94 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.92 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.92 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.91 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.91 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.88 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.88 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 97.87 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.87 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 97.86 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 97.86 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.86 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.85 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.85 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.84 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.84 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 97.84 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.83 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.83 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.81 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.78 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.77 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.77 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.76 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.76 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.74 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.7 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.65 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.61 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.59 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.57 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.5 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.43 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.41 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.32 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.23 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.12 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.11 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.11 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.02 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 96.92 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 96.88 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 96.86 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.81 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.81 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.74 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.7 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 96.69 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.54 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.35 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.23 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.19 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.14 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.98 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 95.96 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.88 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.77 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.31 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.16 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 93.85 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 93.8 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 93.62 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 93.56 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 93.08 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 92.13 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 90.38 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 89.29 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 88.37 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 87.12 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 86.29 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 86.11 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 85.59 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 85.18 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 82.79 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 82.2 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 81.12 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 81.06 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-41 Score=394.67 Aligned_cols=522 Identities=11% Similarity=0.021 Sum_probs=377.1
Q ss_pred HHHHhcCChhHHHHHHhhcCCCCceeHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHhhCCCChHHHHH
Q 047992 99 SVYAKCGCLDDAREVFEDMRERNLYTWSAMIGAYSRDQRWREVVELFFLMVQDGLFPDDFLFPKILQACGNCGDFEAGKL 178 (868)
Q Consensus 99 ~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 178 (868)
..+.+.|.+..++..|+.++.+++..|+.++..|.+.|++++|+.+|++|.. ..|+..++..+..+|...|+++.|..
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~ 138 (597)
T 2xpi_A 61 NNTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKC 138 (597)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHH
Confidence 3467788899999999999999999999999999999999999999999985 56888899999999999999999999
Q ss_pred HHHHHHHhCCCCCcchHHHHHHHHHHcCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCccCh
Q 047992 179 MHSLVIKLGMSCVRRVRNSVLAVYVKCGKLIWARRFFESMDEKDGVAWNSMISGYFQIGENDEAHRLFDKMCREEIKLGV 258 (868)
Q Consensus 179 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 258 (868)
++..+... +++..+++.++.+|.++|++++|.++|+++...+... .++.+.+. ...+..++.
T Consensus 139 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~~-----------~~~~~~~~~ 200 (597)
T 2xpi_A 139 LLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDE-----KNANKLLM-----------QDGGIKLEA 200 (597)
T ss_dssp HHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC---------------C-----------CCSSCCHHH
T ss_pred HHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccc-----cccccccc-----------cccccchhH
Confidence 99877543 5778899999999999999999999999644333110 01111111 122344455
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcccHHHHHHHH
Q 047992 259 VTFNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISAC 338 (868)
Q Consensus 259 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~ 338 (868)
.+|+.++.+|.+.|++++|.++|++|.+.++. +...|..+...+...+..+.
T Consensus 201 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~--------------------------- 252 (597)
T 2xpi_A 201 SMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEW--------------------------- 252 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHH---------------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHH---------------------------
Confidence 66666666666666666666666666554322 22233333222221111110
Q ss_pred hchhhHHHHHHH-HHHHHHhCCCCCccHHHHHHHHHHcCCCHHHHHHHHHhcCC--CCeehHHHHHHHHHhcCChhHHHH
Q 047992 339 TDLKALAMGMEI-HSLAVKMGFTDDVLVGNSLINMYSKCEELEAAERVFDMIKD--KDVYSWNSMIAGYCQAGYCGKAYE 415 (868)
Q Consensus 339 ~~~~~~~~a~~i-~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~vf~~~~~--~~~~~~~~li~~~~~~g~~~~A~~ 415 (868)
.....+ +..+...+......+++.++.+|.++|++++|.++|+.+.+ ++..+|+.++.+|.+.|++++|++
T Consensus 253 ------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 326 (597)
T 2xpi_A 253 ------DLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLA 326 (597)
T ss_dssp ------HHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ------HHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHH
Confidence 000011 12222222233344566678888889999999999998887 688889999999999999999999
Q ss_pred HHHHhHhCCCCCCeeehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCC
Q 047992 416 LFIKMQESDVPPNVITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSC 495 (868)
Q Consensus 416 l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 495 (868)
+|+++.+.+ +.+..+++.++.+|.+.|++++|..+|+++.+.. +.+..+|+.++..|.+.|++++|.++|+++...
T Consensus 327 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 402 (597)
T 2xpi_A 327 ITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH--PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM- 402 (597)
T ss_dssp HHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-
Confidence 999988765 3477788888899999999999999998887543 556778888888888888888888888877531
Q ss_pred CCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHH
Q 047992 496 FYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSL 572 (868)
Q Consensus 496 ~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~l 572 (868)
.+.+..+++.++.+|.+.|++++|.++|+++. +.+..+|+.+
T Consensus 403 -----------------------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 447 (597)
T 2xpi_A 403 -----------------------------------DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFL 447 (597)
T ss_dssp -----------------------------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHH
T ss_pred -----------------------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHH
Confidence 12355677888888888899999988888764 4577889999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCChHHHHHHHHHhhhhc---CCCCC--hhHHHHHHHh
Q 047992 573 ICGYVLHGFWHAALDLFDQMKSFGLKP-NRGTFLSIILAHSLAGMVDLGKKVFCSITECY---QIIPM--IEHYSAMIDL 646 (868)
Q Consensus 573 i~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~--~~~y~~lvd~ 646 (868)
+.+|.+.|++++|+++|++|.+. .| +..++..+..++.+.|++++|.++|+.+.+.. +..|+ ..+|..++++
T Consensus 448 ~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~ 525 (597)
T 2xpi_A 448 GMQHMQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHA 525 (597)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHH
Confidence 99999999999999999999874 34 56888888899999999999999999887743 66777 6789999999
Q ss_pred hhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhh
Q 047992 647 YGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAI 715 (868)
Q Consensus 647 l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 715 (868)
|.+.|++++|.+.++++ ...| +..+|..+..+|...|+++.|...++++++++|+++.+|..|+++|..
T Consensus 526 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 526 YRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 99999999999999887 3344 677999999999999999999999999999999999999999998864
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-39 Score=380.71 Aligned_cols=499 Identities=12% Similarity=0.025 Sum_probs=398.7
Q ss_pred HHHHcCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCccChhhHHHHHHHHHhcCChHHHHHH
Q 047992 201 VYVKCGKLIWARRFFESMDEKDGVAWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQLGQCDVAMEM 280 (868)
Q Consensus 201 ~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 280 (868)
.+.++|.+..+...|+.++.+++..|+.++..|.+.|++++|+.+|++|.. ..|+..++..++..|.+.|++++|..+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~ 139 (597)
T 2xpi_A 62 NTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCL 139 (597)
T ss_dssp --------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHH
Confidence 356678888899999999989999999999999999999999999999985 467889999999999999999999999
Q ss_pred HHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcccHHHHHHHHhchhhHHHHHHHHHHHHHhCCC
Q 047992 281 VKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLAVKMGFT 360 (868)
Q Consensus 281 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~ 360 (868)
|+.+... .++..+|+.++.+|.+.|++++|+++|+++ .|+.. ...++...++ ...+..
T Consensus 140 ~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~~~----~~~~~~~~~~-----------~~~~~~ 197 (597)
T 2xpi_A 140 LTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGET-----NPFRK----DEKNANKLLM-----------QDGGIK 197 (597)
T ss_dssp HHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSS-----CTTC--------------C-----------CCSSCC
T ss_pred HHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhcc-----CCccc----cccccccccc-----------cccccc
Confidence 9998643 568899999999999999999999999853 23221 0111111111 112345
Q ss_pred CCccHHHHHHHHHHcCCCHHHHHHHHHhcCCCC---eehHHHHHHHHHhcCChhHHH--HH-HHHhHhCCCCCCeeehhh
Q 047992 361 DDVLVGNSLINMYSKCEELEAAERVFDMIKDKD---VYSWNSMIAGYCQAGYCGKAY--EL-FIKMQESDVPPNVITWNV 434 (868)
Q Consensus 361 ~~~~~~~~li~~y~~~g~~~~A~~vf~~~~~~~---~~~~~~li~~~~~~g~~~~A~--~l-~~~m~~~g~~p~~~t~~~ 434 (868)
.+..+++.++.+|.+.|++++|.++|+++.+.+ ...|..+...+...+..+.+. .+ +..+...+..+...+|+.
T Consensus 198 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 277 (597)
T 2xpi_A 198 LEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYML 277 (597)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHH
Confidence 567788889999999999999999998886533 334444544443333322221 11 555565555566677888
Q ss_pred HHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchh
Q 047992 435 LISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLV 514 (868)
Q Consensus 435 li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~ 514 (868)
++.+|.+.|++++|.++|+++.+. +++..+|+.++.+|.+.|++++|+++|+++...+ +.+..++..+...+...|
T Consensus 278 ~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 353 (597)
T 2xpi_A 278 KLNKTSHEDELRRAEDYLSSINGL---EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESG 353 (597)
T ss_dssp TSCTTTTHHHHHHHHHHHHTSTTG---GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHT
T ss_pred HHHHHcCcchHHHHHHHHHHhhcC---CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhC
Confidence 899999999999999999999764 5888999999999999999999999999998654 336778889999999999
Q ss_pred chHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHH
Q 047992 515 ASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQ 591 (868)
Q Consensus 515 ~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~ 591 (868)
+.+.+.+++..+++. .+.+..+++.++.+|.++|++++|.++|+++. +.+..+|+.++.+|.+.|++++|+++|++
T Consensus 354 ~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 432 (597)
T 2xpi_A 354 EKNKLYLISNDLVDR-HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTT 432 (597)
T ss_dssp CHHHHHHHHHHHHHH-CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999999864 34578899999999999999999999999864 56788999999999999999999999999
Q ss_pred HHHCCCCC-CHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-------
Q 047992 592 MKSFGLKP-NRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM------- 663 (868)
Q Consensus 592 m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~------- 663 (868)
|.+. .| +..++..++.+|.+.|++++|.++|+.+.+.. ..+...|.+++++|.+.|++++|.++++++
T Consensus 433 ~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 508 (597)
T 2xpi_A 433 AARL--FQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF--QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKT 508 (597)
T ss_dssp HHHT--TTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHh--CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcc
Confidence 9984 45 66899999999999999999999999998753 335788999999999999999999999988
Q ss_pred CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHHhc
Q 047992 664 PIEPD--SSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLEREN 732 (868)
Q Consensus 664 ~~~p~--~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 732 (868)
+..|+ ..+|..++.+|..+|+++.|+..++++++++|+++.+|..|+++|...|+|++|.+..+.+.+.
T Consensus 509 ~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 509 QSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp CCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 55787 7799999999999999999999999999999999999999999999999999999998887654
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=8.3e-25 Score=240.15 Aligned_cols=335 Identities=14% Similarity=0.171 Sum_probs=255.0
Q ss_pred hchhhHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHcCCCHHHHHHHHHhcCC--C-CeehHHHHHHHHHhcCChhHHHH
Q 047992 339 TDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEELEAAERVFDMIKD--K-DVYSWNSMIAGYCQAGYCGKAYE 415 (868)
Q Consensus 339 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~vf~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~ 415 (868)
...++++.+...+..+++.. +.+...+..+...|.+.|++++|...|+.+.. | +..+|..+...+.+.|++++|++
T Consensus 44 ~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 122 (388)
T 1w3b_A 44 FQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQ 122 (388)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHH
Confidence 33444444444444443332 33445666666677777777777777766542 2 34467777777777788888888
Q ss_pred HHHHhHhCCCCCC-eeehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcC
Q 047992 416 LFIKMQESDVPPN-VITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSS 494 (868)
Q Consensus 416 l~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 494 (868)
.|+++.+.. |+ ...+..+...|...|++++|.+.|+++.+.. |.+..+|..+...+.+.|++++|...|+++...
T Consensus 123 ~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 198 (388)
T 1w3b_A 123 AYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ--PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL 198 (388)
T ss_dssp HHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 887777653 33 3345566677777788888888887776543 445567777777777777777777777776532
Q ss_pred CCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecHH
Q 047992 495 CFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNS 571 (868)
Q Consensus 495 g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~ 571 (868)
.| .+...+..+...|.+.|++++|...|++.. +.+..+|+.
T Consensus 199 --~p----------------------------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 242 (388)
T 1w3b_A 199 --DP----------------------------------NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGN 242 (388)
T ss_dssp --CT----------------------------------TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHH
T ss_pred --CC----------------------------------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHH
Confidence 12 245567778888889999999999988653 456788999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhc
Q 047992 572 LICGYVLHGFWHAALDLFDQMKSFGLKPN-RGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRS 650 (868)
Q Consensus 572 li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~ 650 (868)
+...|...|++++|++.|+++.+ ..|+ ..++..+..++...|++++|..+|+.+.+. .+++...+..+..++.+.
T Consensus 243 l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~ 318 (388)
T 1w3b_A 243 LACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHc
Confidence 99999999999999999999998 5665 477888889999999999999999999874 345677899999999999
Q ss_pred CChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCC
Q 047992 651 GKLEEAMEFIEDM-PIEPD-SSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGK 718 (868)
Q Consensus 651 g~~~eA~~~i~~~-~~~p~-~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 718 (868)
|++++|.+.++++ ...|+ ..+|..+..++...|+++.|...++++++++|+++.+|..++++|...|+
T Consensus 319 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 9999999999998 44454 66899999999999999999999999999999999999999999988764
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.94 E-value=3.9e-26 Score=255.15 Aligned_cols=188 Identities=10% Similarity=0.083 Sum_probs=127.1
Q ss_pred eHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHhhCCCC---------hHHHHHHHHHHHHhCCCCCcch
Q 047992 124 TWSAMIGAYSRDQRWREVVELFFLMVQDGLFPDDFLFPKILQACGNCGD---------FEAGKLMHSLVIKLGMSCVRRV 194 (868)
Q Consensus 124 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~---------~~~a~~~~~~~~~~g~~~~~~~ 194 (868)
.++.+|.+|++.|++++|+++|++|.+.|+.||..||++||.+|++.+. ++.|.++++.|.+.|+.|
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~P---- 103 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVP---- 103 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCC----
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCC----
Confidence 4666677777777777777777777777777777777777777765543 233444444444444333
Q ss_pred HHHHHHHHHHcCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCccChhhHHHHHHHHHhcCCh
Q 047992 195 RNSVLAVYVKCGKLIWARRFFESMDEKDGVAWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQLGQC 274 (868)
Q Consensus 195 ~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 274 (868)
|.++||+||.+|++.|++++|.++|++|.+.|+.||..|||+||.+|++.|++
T Consensus 104 ---------------------------d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~ 156 (501)
T 4g26_A 104 ---------------------------NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDA 156 (501)
T ss_dssp ---------------------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCH
T ss_pred ---------------------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCH
Confidence 44445555555555666666667777777777777777777777777777777
Q ss_pred HHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcccHHHHHHHHhchh
Q 047992 275 DVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISACTDLK 342 (868)
Q Consensus 275 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~ 342 (868)
++|.++|++|.+.|+.||..||++||.+|++.|+.++|.++|++|.+.|+.|+..||..++..+...+
T Consensus 157 ~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~ 224 (501)
T 4g26_A 157 DKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEV 224 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHH
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCc
Confidence 77777777777777777777777777777777777777777777777777777777777776665543
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-26 Score=257.89 Aligned_cols=215 Identities=15% Similarity=0.135 Sum_probs=184.8
Q ss_pred HHHHHHHHhHHCCCCCCc-chHHHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHcCChHHHHHHHhhc
Q 047992 140 EVVELFFLMVQDGLFPDD-FLFPKILQACGNCGDFEAGKLMHSLVIKLGMSCVRRVRNSVLAVYVKCGKLIWARRFFESM 218 (868)
Q Consensus 140 ~a~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~ 218 (868)
.+..+.+++.+.+..+.+ ..++.+|.+|++.|++++|.++++.|.+.|+.||.++||+||.+|++.+....+
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------- 80 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------- 80 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-------
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-------
Confidence 455667778777776554 358889999999999999999999999999999999999999999887764321
Q ss_pred CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCccChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCeeeHHH
Q 047992 219 DEKDGVAWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTC 298 (868)
Q Consensus 219 ~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 298 (868)
.+.+..++|.++|++|...|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..+||+
T Consensus 81 ---------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~ 145 (501)
T 4g26_A 81 ---------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGP 145 (501)
T ss_dssp ---------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred ---------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehH
Confidence 23445789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCccCCcccHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHcC
Q 047992 299 MISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKC 376 (868)
Q Consensus 299 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~ 376 (868)
+|.+|++.|+.++|.++|++|.+.|+.||..||+++|.+|++.|+.++|.+++..|.+.|..|+..+++.++..|...
T Consensus 146 lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 146 ALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999988753
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-23 Score=229.39 Aligned_cols=323 Identities=15% Similarity=0.150 Sum_probs=239.1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhcCC---CCeehHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCeeehhhHHHHHHh
Q 047992 365 VGNSLINMYSKCEELEAAERVFDMIKD---KDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNVLISGYIQ 441 (868)
Q Consensus 365 ~~~~li~~y~~~g~~~~A~~vf~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~ 441 (868)
.+..+...+.+.|++++|...++.... .+..+|..+...|.+.|++++|++.|+++.+.. +.+..+|..+...|.+
T Consensus 35 ~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 113 (388)
T 1w3b_A 35 VLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVA 113 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHH
Confidence 444455556666666666666655432 234455556666666666666666666555432 1122345555555555
Q ss_pred cCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHH
Q 047992 442 NGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKE 521 (868)
Q Consensus 442 ~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~ 521 (868)
.|++++|.+.|+++.+.. |.+...+..+...+...|++++|.+.|+++
T Consensus 114 ~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a------------------------------ 161 (388)
T 1w3b_A 114 AGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAKACYLKA------------------------------ 161 (388)
T ss_dssp HSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH------------------------------
T ss_pred cCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHH------------------------------
Confidence 555555555555554432 223333444444445555555555555444
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 047992 522 IHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLK 598 (868)
Q Consensus 522 i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 598 (868)
++. .+.+...++.+...|.+.|++++|...|+++. +.+...|..+...+...|++++|+..|++... +.
T Consensus 162 -----l~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~ 233 (388)
T 1w3b_A 162 -----IET-QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS--LS 233 (388)
T ss_dssp -----HHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH--HC
T ss_pred -----HHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hC
Confidence 442 12356778889999999999999999999875 45667899999999999999999999999998 56
Q ss_pred CC-HHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCC-ChhHHHHHHHhhhhcCChHHHHHHHHhC-C-CCCCHHHHHH
Q 047992 599 PN-RGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIP-MIEHYSAMIDLYGRSGKLEEAMEFIEDM-P-IEPDSSIWEA 674 (868)
Q Consensus 599 p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~-~~p~~~~w~~ 674 (868)
|+ ..++..+..++...|++++|...|+.+.+. .| +...|..++.++.+.|++++|.+.++++ . .+++..+|..
T Consensus 234 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 310 (388)
T 1w3b_A 234 PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNN 310 (388)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHH
Confidence 75 478888999999999999999999999873 34 4567999999999999999999999988 2 3456779999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHHh
Q 047992 675 LLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLERE 731 (868)
Q Consensus 675 ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 731 (868)
+...+...|+++.|...+++++++.|+++..+..|+.+|...|++++|.+..+.+.+
T Consensus 311 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 311 LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999887754
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.92 E-value=5.7e-24 Score=238.46 Aligned_cols=348 Identities=14% Similarity=0.071 Sum_probs=248.8
Q ss_pred CccHHHHHHHHHHcCCCHHHHHHHHHhcCC---CCeehHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCeeehhhHHHH
Q 047992 362 DVLVGNSLINMYSKCEELEAAERVFDMIKD---KDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNVLISG 438 (868)
Q Consensus 362 ~~~~~~~li~~y~~~g~~~~A~~vf~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~ 438 (868)
+...+..+...|.+.|++++|..+|+.+.. .+..+|..+...|...|++++|+..|+++.+.+ +.+..++..+...
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHH
Confidence 344566666777777777777777766542 345566666777777777777777777766554 2244556666666
Q ss_pred HHhcCCHHHHHHHHHhcccCCCCCCCe---eehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhc
Q 047992 439 YIQNGNEDEAVDLFQRMGKNDKVKRNT---ASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVA 515 (868)
Q Consensus 439 ~~~~g~~~~A~~~f~~m~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 515 (868)
|.+.|++++|...|+++.+.. +.+. ..|..++..+...+ +......+...|+
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~-----------------------~~~~a~~~~~~~~ 158 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQR-----------------------LRSQALNAFGSGD 158 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHTC
T ss_pred HHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHcCC
Confidence 777777777777777665543 2233 44444433311100 0011112334455
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHH
Q 047992 516 SNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQM 592 (868)
Q Consensus 516 ~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m 592 (868)
++.+...+..+++. .+.+..++..++.+|.++|++++|.+.|+++. +.+..+|+.++..|...|++++|++.|+++
T Consensus 159 ~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 237 (450)
T 2y4t_A 159 YTAAIAFLDKILEV-CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVREC 237 (450)
T ss_dssp HHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555555555442 23367788899999999999999999999875 467889999999999999999999999999
Q ss_pred HHCCCCCCHHHHH-HH------------HHHhhccCChHHHHHHHHHhhhhcCCCCC--hhHHHHHHHhhhhcCChHHHH
Q 047992 593 KSFGLKPNRGTFL-SI------------ILAHSLAGMVDLGKKVFCSITECYQIIPM--IEHYSAMIDLYGRSGKLEEAM 657 (868)
Q Consensus 593 ~~~g~~p~~~t~~-~l------------l~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~y~~lvd~l~r~g~~~eA~ 657 (868)
.+ ..|+..+.. .+ ..+|.+.|++++|..+|+.+.+..+..|. ..+|.++++++.+.|++++|.
T Consensus 238 ~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~ 315 (450)
T 2y4t_A 238 LK--LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAI 315 (450)
T ss_dssp HH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HH--hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 97 677765433 33 67899999999999999999874333332 568999999999999999999
Q ss_pred HHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHH------------HHHhhcC--CChh
Q 047992 658 EFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLIL------------QIYAICG--KPED 721 (868)
Q Consensus 658 ~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~------------~~y~~~g--~~~~ 721 (868)
+.++++ ...| +..+|..+..+|...|+++.|...++++++++|+++.++..|+ +.|...| ++.+
T Consensus 316 ~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~ 395 (450)
T 2y4t_A 316 RVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAK 395 (450)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCC
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCC
Confidence 999997 4445 5779999999999999999999999999999999999999999 5677777 4444
Q ss_pred HHHHHHHHHhcCCCCCC
Q 047992 722 ALKVRKLERENTRRNSF 738 (868)
Q Consensus 722 a~~~~~~m~~~~~~k~~ 738 (868)
..++++.+++..++..|
T Consensus 396 ~~~~~~~y~~~~l~~~p 412 (450)
T 2y4t_A 396 KQEIIKAYRKLALQWHP 412 (450)
T ss_dssp TTHHHHHHHHHHHHSCG
T ss_pred HHHHHHHHHHHHHHhCC
Confidence 45556555554444444
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-21 Score=223.42 Aligned_cols=444 Identities=14% Similarity=0.030 Sum_probs=295.6
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCccChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHH
Q 047992 224 VAWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGF 303 (868)
Q Consensus 224 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 303 (868)
..|......+.+.|++++|++.|+++.... |+..++..+...|.+.|++++|...|+++.+.++. +..+|..+..++
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~ 83 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPD-YSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChH-HHHHHHHHHHHH
Confidence 346667778888899999999999888765 68888888999999999999999999988887644 667888899999
Q ss_pred HhcCChhHHHHHHHHHHhCCccCCcccHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCCccHHHH---HHHHHHcCCCHH
Q 047992 304 AQNGRTSQALDLFKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLAVKMGFTDDVLVGNS---LINMYSKCEELE 380 (868)
Q Consensus 304 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~---li~~y~~~g~~~ 380 (868)
.+.|++++|+..|+++...+ +++.......+..+..........+.+..+...+..++...... ............
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 99999999999999987655 34445555555554444444433333322222211111110000 001111111122
Q ss_pred HHHHHHHhcCC---------C-CeehHHHHHHHHHh---cCChhHHHHHHHHhHh-----CCCCC--------Ceeehhh
Q 047992 381 AAERVFDMIKD---------K-DVYSWNSMIAGYCQ---AGYCGKAYELFIKMQE-----SDVPP--------NVITWNV 434 (868)
Q Consensus 381 ~A~~vf~~~~~---------~-~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~-----~g~~p--------~~~t~~~ 434 (868)
.+...+..... + +...+......+.. .|++++|+..|+++.+ ....| +..++..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 22222222211 1 12233333333333 6777777777777766 31122 2344556
Q ss_pred HHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchh
Q 047992 435 LISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLV 514 (868)
Q Consensus 435 li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~ 514 (868)
+...|...|++++|...|+++.+.. |+...|..+...|...|++++|+..++++...
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------------------- 299 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIELF---PRVNSYIYMALIMADRNDSTEYYNYFDKALKL-------------------- 299 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTT--------------------
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhC---ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhc--------------------
Confidence 6666777777777777777665543 22555666666666666666666666665532
Q ss_pred chHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHH
Q 047992 515 ASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQ 591 (868)
Q Consensus 515 ~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~ 591 (868)
.+.+..++..+...|.+.|++++|...|++.. +.+...|..+...|...|++++|++.|++
T Consensus 300 ----------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 363 (514)
T 2gw1_A 300 ----------------DSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSE 363 (514)
T ss_dssp ----------------CTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred ----------------CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 12245567778888888888888888888653 45667888888888899999999999999
Q ss_pred HHHCCCCCC-HHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCC----hhHHHHHHHhhhh---cCChHHHHHHHHhC
Q 047992 592 MKSFGLKPN-RGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPM----IEHYSAMIDLYGR---SGKLEEAMEFIEDM 663 (868)
Q Consensus 592 m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~y~~lvd~l~r---~g~~~eA~~~i~~~ 663 (868)
+.+ ..|+ ..++..+...+...|++++|..+|+.+.+...-.|. ...+..+..++.+ .|++++|.+.++++
T Consensus 364 ~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a 441 (514)
T 2gw1_A 364 AKR--KFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKA 441 (514)
T ss_dssp HHH--HSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHH
T ss_pred HHH--HcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHH
Confidence 887 3453 467777888888899999999999888775444444 4478888899999 99999999999887
Q ss_pred -CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHH
Q 047992 664 -PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQI 712 (868)
Q Consensus 664 -~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~ 712 (868)
...| +..+|..+...+...|+++.|...++++++++|+++..+..+...
T Consensus 442 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 492 (514)
T 2gw1_A 442 SKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFA 492 (514)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred HHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 3334 456888888899999999999999999999999988887776443
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=7.4e-21 Score=216.94 Aligned_cols=433 Identities=10% Similarity=-0.031 Sum_probs=281.7
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcccHHHHHHHH
Q 047992 259 VTFNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISAC 338 (868)
Q Consensus 259 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~ 338 (868)
..+..+...+.+.|++++|...|+++.+.. |+..+|..+..++.+.|++++|+..++++.... +.+..++..+..++
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence 445566667777777777777777777664 466777777777777777777777777776432 12223444455555
Q ss_pred hchhhHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHcCCCHHHHHHHHHhcCCCCeehHHHHHHHHHhcCChhHHHHHHH
Q 047992 339 TDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEELEAAERVFDMIKDKDVYSWNSMIAGYCQAGYCGKAYELFI 418 (868)
Q Consensus 339 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~vf~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 418 (868)
...|+++.|...+..+.+.+. ++......++..+.+... ...+.+.+.
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~l~ 131 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQA-------------------------------MSKLKEKFG 131 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHH-------------------------------HHHHTTC--
T ss_pred HHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHH-------------------------------HHHHHHHHH
Confidence 555555555555555554432 222222222222222221 222222222
Q ss_pred HhHhCCCCCCeeehhhHHHH---HHhcCCHHHHHHHHHhcccCCC-----CCCCeeehhhhHHHHHh---cCChhHHHHH
Q 047992 419 KMQESDVPPNVITWNVLISG---YIQNGNEDEAVDLFQRMGKNDK-----VKRNTASWNSLIAGYQQ---LGQKNNALGV 487 (868)
Q Consensus 419 ~m~~~g~~p~~~t~~~li~~---~~~~g~~~~A~~~f~~m~~~~~-----~~~~~~~~~~li~~~~~---~g~~~~A~~~ 487 (868)
.+...+..|+...+..-... .............+........ .+.+...+......+.. .|++++|+..
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 211 (514)
T 2gw1_A 132 DIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADES 211 (514)
T ss_dssp -------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHH
T ss_pred HHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHH
Confidence 22111111111111110000 0001111111111111111000 01123333333343443 6778888888
Q ss_pred HHHhhc-----CCCCC--------CHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHH
Q 047992 488 FRKMQS-----SCFYP--------NCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYS 554 (868)
Q Consensus 488 ~~~m~~-----~g~~p--------~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A 554 (868)
|+++.. ..-.| +..++..+...+...|+++.+...+..+++.... ..++..+...|.+.|++++|
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A 289 (514)
T 2gw1_A 212 FTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEY 289 (514)
T ss_dssp HHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTG
T ss_pred HHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHH
Confidence 877765 21122 2345555666677778888888888888775433 77888999999999999999
Q ss_pred HHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCChHHHHHHHHHhhhh
Q 047992 555 RTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPN-RGTFLSIILAHSLAGMVDLGKKVFCSITEC 630 (868)
Q Consensus 555 ~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 630 (868)
...|+++. +.+...|..+...|...|++++|+..|+++.+ ..|+ ...+..+...+...|++++|..+|+.+.+.
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 367 (514)
T 2gw1_A 290 YNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKE--LDPENIFPYIQLACLAYRENKFDDCETLFSEAKRK 367 (514)
T ss_dssp GGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHH--TCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999764 45677899999999999999999999999998 4554 477888888999999999999999999875
Q ss_pred cCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC----CCCCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHhccC
Q 047992 631 YQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM----PIEPD----SSIWEALLTACRI---HGNIDLAVLAIERLFDLE 699 (868)
Q Consensus 631 ~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~----~~~p~----~~~w~~ll~a~~~---~~~~~~a~~~~~~~~~l~ 699 (868)
.. .+...+..+..++.+.|++++|.+.++++ |..|+ ..+|..+...+.. .|+++.|...++++++++
T Consensus 368 ~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~ 445 (514)
T 2gw1_A 368 FP--EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD 445 (514)
T ss_dssp ST--TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC
T ss_pred cc--cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC
Confidence 33 24567889999999999999999999887 33333 4488999999999 999999999999999999
Q ss_pred CCCchhHHHHHHHHhhcCCChhHHHHHHHHHhc
Q 047992 700 PGDVLIQRLILQIYAICGKPEDALKVRKLEREN 732 (868)
Q Consensus 700 p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 732 (868)
|+++.++..++.+|...|++++|.+..+...+.
T Consensus 446 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 446 PRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 999999999999999999999999988776543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-16 Score=187.10 Aligned_cols=313 Identities=13% Similarity=0.178 Sum_probs=230.4
Q ss_pred HHHHHHcCCCHHHHHHHHHhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCeeehhhHHHHHHhcCCHHHH
Q 047992 369 LINMYSKCEELEAAERVFDMIKDKDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNVLISGYIQNGNEDEA 448 (868)
Q Consensus 369 li~~y~~~g~~~~A~~vf~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A 448 (868)
+...+...|.+++|..+|+.... .....+.+ +-..+++++|.++.++.. +..+|..+..++...|++++|
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~~-~~~A~~VL---ie~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEA 1124 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFDV-NTSAVQVL---IEHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEA 1124 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCC-HHHHHHHH---HHHHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHH
Confidence 44555666777777777777541 11111222 226677777777777653 567788888888888888888
Q ss_pred HHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHH
Q 047992 449 VDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLR 528 (868)
Q Consensus 449 ~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~ 528 (868)
.+.|.+. .|...|..++..+.+.|++++|.+.|...+... ++....+.+.-++++.+.++..... ++
T Consensus 1125 IdsYiKA-------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f----I~ 1191 (1630)
T 1xi4_A 1125 IDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF----IN 1191 (1630)
T ss_pred HHHHHhc-------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH----Hh
Confidence 8888664 466677778888888888888888888766543 3333333477777777776643333 21
Q ss_pred hCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047992 529 RSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMSSKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSII 608 (868)
Q Consensus 529 ~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 608 (868)
.++...+..+.+.|...|++++|...|... ..|..+...|.+.|++++|++.+++. -|..+|..+-
T Consensus 1192 ---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~ 1257 (1630)
T 1xi4_A 1192 ---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVC 1257 (1630)
T ss_pred ---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHH
Confidence 345556667888888888888888888885 37888888888888888888888876 3457888888
Q ss_pred HHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhc--CC
Q 047992 609 LAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPDSS-IWEALLTACRIH--GN 684 (868)
Q Consensus 609 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~~~-~w~~ll~a~~~~--~~ 684 (868)
.+|...|.+..|..+... +.-+.+.+..++..|.+.|.++||+.+++.. ..+|... .|.-|.-++.++ ++
T Consensus 1258 ~acve~~Ef~LA~~cgl~------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~pek 1331 (1630)
T 1xi4_A 1258 FACVDGKEFRLAQMCGLH------IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQK 1331 (1630)
T ss_pred HHHhhhhHHHHHHHHHHh------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHH
Confidence 888888888888876653 3345677889999999999999999999887 6666555 675565555544 57
Q ss_pred HHHHHHHHHHHhccCC-----CCchhHHHHHHHHhhcCCChhHHH
Q 047992 685 IDLAVLAIERLFDLEP-----GDVLIQRLILQIYAICGKPEDALK 724 (868)
Q Consensus 685 ~~~a~~~~~~~~~l~p-----~~~~~~~~l~~~y~~~g~~~~a~~ 724 (868)
+..+.+.++.-..+.| +++..|.-+.-+|...|+|+.|..
T Consensus 1332 lmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1332 MREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 8888888888888888 888999999999999999999985
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.86 E-value=4.6e-20 Score=211.73 Aligned_cols=431 Identities=11% Similarity=0.037 Sum_probs=199.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCccChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHH
Q 047992 224 VAWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGF 303 (868)
Q Consensus 224 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 303 (868)
..|..+...+.+.|++++|++.|+++.... +.+..++..+...|.+.|++++|++.|+++.+.++. +..+|..+...+
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~ 103 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD-HSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHH
Confidence 345555566666666666666666665543 224445555555555555555555555555544322 344444444555
Q ss_pred HhcCChhHHHHHHHHHHhCCccCCcccHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHcCCCHHHHH
Q 047992 304 AQNGRTSQALDLFKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEELEAAE 383 (868)
Q Consensus 304 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 383 (868)
...|++++|+..|+.+. ..|+ ..+..+..+...+....|.
T Consensus 104 ~~~g~~~~A~~~~~~~~---~~~~-------------------------------------~~~~~~~~~~~~~~~~~a~ 143 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVLS---LNGD-------------------------------------FDGASIEPMLERNLNKQAM 143 (537)
T ss_dssp HHHTCHHHHHHHHHHHC---------------------------------------------------CHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHh---cCCC-------------------------------------CChHHHHHHHHHHHHHHHH
Confidence 55555555555443221 1111 1111233444445556677
Q ss_pred HHHHhcCCC------CeehHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCee-ehhhHHHHHHhc--------CCHHHH
Q 047992 384 RVFDMIKDK------DVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVI-TWNVLISGYIQN--------GNEDEA 448 (868)
Q Consensus 384 ~vf~~~~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~li~~~~~~--------g~~~~A 448 (868)
..++.+... ........+..+....+.+.+...+...... .+... ....+...+... |++++|
T Consensus 144 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A 221 (537)
T 3fp2_A 144 KVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKS 221 (537)
T ss_dssp HHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 777666542 1222344444555555555554444333211 01100 112222222221 256666
Q ss_pred HHHHHhcccCCCCCCCe-------eehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHH
Q 047992 449 VDLFQRMGKNDKVKRNT-------ASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKE 521 (868)
Q Consensus 449 ~~~f~~m~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~ 521 (868)
..+|+++.+.. +.+. .+|..+...+...|++++|...|+++.. ..|+...+..+...+...|+++.+..
T Consensus 222 ~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~ 297 (537)
T 3fp2_A 222 TDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESIN--LHPTPNSYIFLALTLADKENSQEFFK 297 (537)
T ss_dssp HHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCHHHHHHHHHHTCCSSCCHHHHH
T ss_pred HHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHh--cCCCchHHHHHHHHHHHhcCHHHHHH
Confidence 66666665543 1221 1344444555566666666666666554 23444444455555555555555555
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 047992 522 IHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLK 598 (868)
Q Consensus 522 i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 598 (868)
.+..+++.. +.+..++..+...|.+.|++++|...|++.. +.+...|..+...|...|++++|++.|+++.+ ..
T Consensus 298 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~ 374 (537)
T 3fp2_A 298 FFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKL--KF 374 (537)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HC
T ss_pred HHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hC
Confidence 555555432 1234455555555555555555555555432 23344555555555555555555555555555 23
Q ss_pred CCH-HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCC----hhHHHHHHHhhhhc----------CChHHHHHHHHhC
Q 047992 599 PNR-GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPM----IEHYSAMIDLYGRS----------GKLEEAMEFIEDM 663 (868)
Q Consensus 599 p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~y~~lvd~l~r~----------g~~~eA~~~i~~~ 663 (868)
|+. ..+..+...+...|+.++|..+|+.+.+...-.+. ...+.....++.+. |++++|.+.++++
T Consensus 375 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 454 (537)
T 3fp2_A 375 PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKA 454 (537)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHH
Confidence 332 34444455555555555555555554432211111 11122223344444 5555555555544
Q ss_pred -CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchh
Q 047992 664 -PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLI 705 (868)
Q Consensus 664 -~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~ 705 (868)
...| +..+|..+...+...|+++.|...++++++++|+++..
T Consensus 455 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 498 (537)
T 3fp2_A 455 CELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEK 498 (537)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 1122 23345555555555555555555555555555554443
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.86 E-value=3.6e-20 Score=212.63 Aligned_cols=421 Identities=12% Similarity=0.045 Sum_probs=273.0
Q ss_pred cchHHHHHHHHHHcCChHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCccChhhHHHHHHHH
Q 047992 192 RRVRNSVLAVYVKCGKLIWARRFFESMDE---KDGVAWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTFNILIRSY 268 (868)
Q Consensus 192 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~ 268 (868)
...+..+...|.+.|++++|...|+++.. .+...|..+..+|.+.|++++|++.|+++.+.+ +.+..++..+...|
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 34567788899999999999999998753 478899999999999999999999999998865 34678899999999
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCC------ccCCcccHHHHHHHHhchh
Q 047992 269 NQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVG------VMPNGVTITSAISACTDLK 342 (868)
Q Consensus 269 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g------~~pd~~t~~~ll~a~~~~~ 342 (868)
...|++++|...|+.+ .. +....+..+..+...+...+|+..++++.... ..|+...
T Consensus 104 ~~~g~~~~A~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~------------ 166 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVL-SL----NGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTS------------ 166 (537)
T ss_dssp HHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHH------------
T ss_pred HHcCCHHHHHHHHHHH-hc----CCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhH------------
Confidence 9999999999999743 33 22222333556666667788888888885321 1122221
Q ss_pred hHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHcCCCHHHHHHHHHhcCCCCee---hHHHHHHHHH--------hcCChh
Q 047992 343 ALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEELEAAERVFDMIKDKDVY---SWNSMIAGYC--------QAGYCG 411 (868)
Q Consensus 343 ~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~vf~~~~~~~~~---~~~~li~~~~--------~~g~~~ 411 (868)
+..|....+.+.+...+......+.. .+..+...+. ..|+++
T Consensus 167 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~ 219 (537)
T 3fp2_A 167 ---------------------------LASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLT 219 (537)
T ss_dssp ---------------------------HHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHH
T ss_pred ---------------------------HHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 12222223333333322222222111 1111111111 113455
Q ss_pred HHHHHHHHhHhCCCCCC--------eeehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhH
Q 047992 412 KAYELFIKMQESDVPPN--------VITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNN 483 (868)
Q Consensus 412 ~A~~l~~~m~~~g~~p~--------~~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~ 483 (868)
+|+.+|+++.+.. |+ ..++..+...+...|++++|...|++..+.. |+...|..+...+...|++++
T Consensus 220 ~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 294 (537)
T 3fp2_A 220 KSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH---PTPNSYIFLALTLADKENSQE 294 (537)
T ss_dssp HHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CCHHHHHHHHHHTCCSSCCHH
T ss_pred HHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC---CCchHHHHHHHHHHHhcCHHH
Confidence 5555555555432 22 1123444445555666666666666655432 334555555666666666666
Q ss_pred HHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC-
Q 047992 484 ALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMS- 562 (868)
Q Consensus 484 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~- 562 (868)
|+..|+++.... +.+..++..+...+...|+.+.+.+.+..+++.. +.+...+..+...|.+.|++++|...|+++.
T Consensus 295 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 372 (537)
T 3fp2_A 295 FFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKL 372 (537)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666666655421 1234455555555666666666666666666632 2356788999999999999999999999764
Q ss_pred --CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHhhcc----------CChHHHHHH
Q 047992 563 --SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR-------GTFLSIILAHSLA----------GMVDLGKKV 623 (868)
Q Consensus 563 --~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-------~t~~~ll~a~~~~----------g~~~~a~~~ 623 (868)
+.+...|..+...|...|++++|++.|+++.+.. |+. ..+.....++... |++++|..+
T Consensus 373 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~ 450 (537)
T 3fp2_A 373 KFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE--EVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKL 450 (537)
T ss_dssp HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--CcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHH
Confidence 4567789999999999999999999999998732 321 2234445567777 999999999
Q ss_pred HHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCC
Q 047992 624 FCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPD 668 (868)
Q Consensus 624 ~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~ 668 (868)
|+...+... .+...+..+..+|.+.|++++|.+.++++ ...|+
T Consensus 451 ~~~a~~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 494 (537)
T 3fp2_A 451 LTKACELDP--RSEQAKIGLAQLKLQMEKIDEAIELFEDSAILART 494 (537)
T ss_dssp HHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHhCC--CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 999987432 34577899999999999999999999987 33443
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-19 Score=203.05 Aligned_cols=363 Identities=12% Similarity=0.069 Sum_probs=207.1
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcccHHHHHH
Q 047992 257 GVVTFNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAIS 336 (868)
Q Consensus 257 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 336 (868)
+...+..+...|.+.|++++|..+|+++.+..+. +..+|..+..++.+.|++++|+..|+++...
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-------------- 89 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIQL-------------- 89 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------------
Confidence 4555666666666666666666666666654332 4556666666666666666666666665432
Q ss_pred HHhchhhHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHcCCCHHHHHHHHHhcCCCCe------ehHHHHHHHHHhcCCh
Q 047992 337 ACTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEELEAAERVFDMIKDKDV------YSWNSMIAGYCQAGYC 410 (868)
Q Consensus 337 a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~vf~~~~~~~~------~~~~~li~~~~~~g~~ 410 (868)
+ +.+..++..+...|.+.|++++|...|+.+...++ ..|..++..+...
T Consensus 90 ---------------------~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 144 (450)
T 2y4t_A 90 ---------------------K-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ--- 144 (450)
T ss_dssp ---------------------C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH---
T ss_pred ---------------------C-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHH---
Confidence 1 12344555666667777777777777766654322 3344443331111
Q ss_pred hHHHHHHHHhHhCCCCCCeeehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHH
Q 047992 411 GKAYELFIKMQESDVPPNVITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRK 490 (868)
Q Consensus 411 ~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 490 (868)
.+..+...|.+.|++++|...|+++.+.. +.+...+..+...|.+.|++++|+..|++
T Consensus 145 --------------------~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 202 (450)
T 2y4t_A 145 --------------------RLRSQALNAFGSGDYTAAIAFLDKILEVC--VWDAELRELRAECFIKEGEPRKAISDLKA 202 (450)
T ss_dssp --------------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCGGGGHHHHHH
T ss_pred --------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 01112233444555555555555554432 33444555555555555555555555555
Q ss_pred hhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCce
Q 047992 491 MQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMS---SKDII 567 (868)
Q Consensus 491 m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~ 567 (868)
+... . +.+..++..++..|.+.|++++|...|+++. +.+..
T Consensus 203 ~~~~--~----------------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 246 (450)
T 2y4t_A 203 ASKL--K----------------------------------NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKR 246 (450)
T ss_dssp HHHH--H----------------------------------CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHh--C----------------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHH
Confidence 5421 0 1123344444555555555555555555432 22223
Q ss_pred ecHHH------------HHHHHhcCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHhhccCChHHHHHHHHHhhhh
Q 047992 568 TWNSL------------ICGYVLHGFWHAALDLFDQMKSFGLKPNR-----GTFLSIILAHSLAGMVDLGKKVFCSITEC 630 (868)
Q Consensus 568 ~~~~l------------i~~~~~~g~~~~A~~l~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 630 (868)
.|..+ +..|...|++++|++.|+++.+ +.|+. ..+..+..++.+.|++++|..+++.+.+.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 324 (450)
T 2y4t_A 247 CFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM 324 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 33333 6677777888888888888777 45652 35566667777788888888888877653
Q ss_pred cCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHH------------HHhcC-----CHHHHHHH
Q 047992 631 YQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPD-SSIWEALLTA------------CRIHG-----NIDLAVLA 691 (868)
Q Consensus 631 ~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~-~~~w~~ll~a------------~~~~~-----~~~~a~~~ 691 (868)
. +.+...|..+..+|...|++++|.+.++++ ...|+ ..+|..+..+ +...| +.+.+.+.
T Consensus 325 ~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~ 402 (450)
T 2y4t_A 325 E--PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKA 402 (450)
T ss_dssp C--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHH
T ss_pred C--cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHH
Confidence 1 224567777788888888888888888776 55554 3455555533 22233 56777888
Q ss_pred HHH-HhccCCCCch----------hHHHHHHHHhhcCCChh
Q 047992 692 IER-LFDLEPGDVL----------IQRLILQIYAICGKPED 721 (868)
Q Consensus 692 ~~~-~~~l~p~~~~----------~~~~l~~~y~~~g~~~~ 721 (868)
+++ +++..|++.. .+..++..|...|+.+.
T Consensus 403 y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 403 YRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp HHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred HHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 886 7888887543 33445555555555443
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.81 E-value=4.7e-15 Score=174.46 Aligned_cols=507 Identities=13% Similarity=0.134 Sum_probs=274.2
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHhC--CCCCcchHHHHHHHHHHcCChHHHHHHHhhcCCCChhhHHHHHHHHHhcC
Q 047992 160 FPKILQACGNCGDFEAGKLMHSLVIKLG--MSCVRRVRNSVLAVYVKCGKLIWARRFFESMDEKDGVAWNSMISGYFQIG 237 (868)
Q Consensus 160 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g 237 (868)
.+...+++...|.+.++.++++.++..+ +..+....+.|+.+..+. +......+.+....-+ ..-+...+...|
T Consensus 988 Vs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~lg 1063 (1630)
T 1xi4_A 988 VSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISNE 1063 (1630)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhCC
Confidence 3445666666666777777666666322 113445555566555555 3344444444333222 334556666677
Q ss_pred ChhHHHHHHHHHHHcCCccChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHH
Q 047992 238 ENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFK 317 (868)
Q Consensus 238 ~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~ 317 (868)
.+++|..+|++... .....+.++ -..+++++|.++.++.. +..+|..+..++.+.|++++|++.|.
T Consensus 1064 lyEEAf~IYkKa~~-----~~~A~~VLi---e~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsYi 1129 (1630)
T 1xi4_A 1064 LFEEAFAIFRKFDV-----NTSAVQVLI---EHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYI 1129 (1630)
T ss_pred CHHHHHHHHHHcCC-----HHHHHHHHH---HHHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 77777777766421 111112222 25566677766666552 45667777777777777777777775
Q ss_pred HHHhCCccCCcccHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHcCCCHHHHHHHHHhcCCCCeehH
Q 047992 318 EMSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEELEAAERVFDMIKDKDVYSW 397 (868)
Q Consensus 318 ~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~vf~~~~~~~~~~~ 397 (868)
+. -|...|..+..+|.+.|+++++.+.+....+.. +++.+.+.++..|++.+++++..... ..++...|
T Consensus 1130 KA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~ 1198 (1630)
T 1xi4_A 1130 KA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHI 1198 (1630)
T ss_pred hc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHH
Confidence 43 445566667777777777777777776665543 33333445667777777766533332 33455556
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhHhCCCCCCeeehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHh
Q 047992 398 NSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQ 477 (868)
Q Consensus 398 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~ 477 (868)
..+...|...|++++|..+|... ..|..+...|.+.|++++|.+.+++. .+..+|..+-.+|..
T Consensus 1199 ~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA-------~n~~aWkev~~acve 1262 (1630)
T 1xi4_A 1199 QQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVD 1262 (1630)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh-------CCHHHHHHHHHHHhh
Confidence 66666677777777777777663 25667777777777777777777665 344666666666777
Q ss_pred cCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc--CCHHHHH
Q 047992 478 LGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKS--GNIVYSR 555 (868)
Q Consensus 478 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~--g~~~~A~ 555 (868)
.|++..|...... +..+...+..+...+.+.|.++++..+++..+... +.....++-|...|+|- +++.++.
T Consensus 1263 ~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhl 1336 (1630)
T 1xi4_A 1263 GKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHL 1336 (1630)
T ss_pred hhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHH
Confidence 7776666664432 22333444466666666777777776666555422 22445565566666553 4566666
Q ss_pred HHHhcCCC--------CCceecHHHHHHHHhcCChHHHHHH-------------HHHHHHCCCCCCHHHHHHHHHHhhcc
Q 047992 556 TIFDGMSS--------KDIITWNSLICGYVLHGFWHAALDL-------------FDQMKSFGLKPNRGTFLSIILAHSLA 614 (868)
Q Consensus 556 ~~f~~~~~--------~d~~~~~~li~~~~~~g~~~~A~~l-------------~~~m~~~g~~p~~~t~~~ll~a~~~~ 614 (868)
+.|..-.. .+...|.-+...|.+.|+++.|+.. |++... -..|...|.-.+.-|.
T Consensus 1337 k~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~--kv~n~elyykai~Fyl-- 1412 (1630)
T 1xi4_A 1337 ELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT--KVANVELYYRAIQFYL-- 1412 (1630)
T ss_pred HHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc--ccccHHHHHHHHHHHH--
Confidence 66653221 2445677777777777777777732 222111 1122333333333333
Q ss_pred CChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047992 615 GMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPIEPDSSIWEALLTACRIHGNIDLAVLAIER 694 (868)
Q Consensus 615 g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~ 694 (868)
+.-.+++..+.. .+.|.++| .-.|.++.+.|.+.-+..+++....+-+..+-.+|-..+....|++.-+...+.
T Consensus 1413 ~~~P~~lndLl~-----~l~~rlD~-~R~V~l~~~~~~l~lik~yl~~vq~~n~~~Vneal~el~ieeed~~~Lr~si~~ 1486 (1630)
T 1xi4_A 1413 EFKPLLLNDLLM-----VLSPRLDH-TRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDA 1486 (1630)
T ss_pred hhChHHHHHHHH-----HhhhcCCh-HHHHHHHHHcCChHHhHHHHHHHHHhcchhhhHHHHHHhcCccchHHHHHHHhh
Confidence 222222222222 23344443 445667777777776666666543233333333343333333333222111111
Q ss_pred HhccCC--------CCchh--HHHHHHHHhhcCCChhHHHHHH
Q 047992 695 LFDLEP--------GDVLI--QRLILQIYAICGKPEDALKVRK 727 (868)
Q Consensus 695 ~~~l~p--------~~~~~--~~~l~~~y~~~g~~~~a~~~~~ 727 (868)
--..|. .+.-. -..-+.+|-+.|+|+.|.++.+
T Consensus 1487 ~~nfd~~~La~~lekheLl~frrIAa~ly~~n~~~~~ai~l~k 1529 (1630)
T 1xi4_A 1487 YDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCK 1529 (1630)
T ss_pred ccCcCHHHHHHHhhhhhHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 100000 01111 2234566777788888887654
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.80 E-value=1e-17 Score=180.82 Aligned_cols=311 Identities=14% Similarity=0.076 Sum_probs=197.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCeeehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHH
Q 047992 397 WNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQ 476 (868)
Q Consensus 397 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~ 476 (868)
|..+...+...|++++|+..|+++.+.. +.+..++..+...|...|++++|...|+++.+.. +.+...|..+...+.
T Consensus 6 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 6 HLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK--MDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCcchHHHHHHHHHH
Confidence 4444445555555555555555554432 2234445555555555555555555555554432 234445555555555
Q ss_pred hcCChhHHHHHHHHhhcCCCCC---CHH-hHHHH------------HHHHhchhchHHHHHHHHHHHHhCCCCChhHHHH
Q 047992 477 QLGQKNNALGVFRKMQSSCFYP---NCV-TILSV------------LPACAYLVASNKVKEIHGCVLRRSLESSLPVMNS 540 (868)
Q Consensus 477 ~~g~~~~A~~~~~~m~~~g~~p---~~~-t~~~l------------l~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 540 (868)
..|++++|...|+++... .| +.. .+..+ ...+...|+.+.+.+.+..+++. .+.+..++..
T Consensus 83 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~ 159 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV-CVWDAELREL 159 (359)
T ss_dssp HHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHH
T ss_pred HcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCchHHHHH
Confidence 666666666666555532 33 211 11111 24455566666666666666653 2235667778
Q ss_pred HHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH-HH-----------
Q 047992 541 LIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGT-FL----------- 605 (868)
Q Consensus 541 Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~----------- 605 (868)
+...|.+.|++++|...|++.. +.+...|..+...|...|++++|++.|++..+ ..|+... +.
T Consensus 160 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~ 237 (359)
T 3ieg_A 160 RAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLK--LDQDHKRCFAHYKQVKKLNKL 237 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCccchHHHHHHHHHHHHHHH
Confidence 8888888888888888888654 34667788888888888888888888888887 4555432 21
Q ss_pred -HHHHHhhccCChHHHHHHHHHhhhhcCCCCCh--hHHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 047992 606 -SIILAHSLAGMVDLGKKVFCSITECYQIIPMI--EHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACR 680 (868)
Q Consensus 606 -~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~ 680 (868)
.+...+...|+.++|..+|+.+.+.....|.. ..|..+..++...|++++|.+.+++. ...| +..+|..+...+.
T Consensus 238 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (359)
T 3ieg_A 238 IESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYL 317 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 22455777888888888888877644332221 23556777888888888888888876 3334 5667888888888
Q ss_pred hcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhh
Q 047992 681 IHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAI 715 (868)
Q Consensus 681 ~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 715 (868)
..|+++.|...++++++++|+++..+..|..++..
T Consensus 318 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 318 IEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 88888888888888888888888887777766543
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=5.6e-17 Score=172.87 Aligned_cols=285 Identities=15% Similarity=0.110 Sum_probs=197.7
Q ss_pred eehHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCeeehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHH
Q 047992 394 VYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIA 473 (868)
Q Consensus 394 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~ 473 (868)
...+..+...+...|++++|+++|+++.+.. +.+...+..++..+...|++++|..+|+++.+.. +.+...|..+..
T Consensus 22 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~ 98 (330)
T 3hym_B 22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY--PSNPVSWFAVGC 98 (330)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSTHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHH
Confidence 3344444455555555555555555554432 2233344445555666666666666666665433 344555666666
Q ss_pred HHHhcC-ChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHH
Q 047992 474 GYQQLG-QKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIV 552 (868)
Q Consensus 474 ~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~ 552 (868)
.+...| ++++|...|++.... .| .+...+..+..+|.+.|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~--~~----------------------------------~~~~~~~~l~~~~~~~~~~~ 142 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTL--EK----------------------------------TYGPAWIAYGHSFAVESEHD 142 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTT--CT----------------------------------TCTHHHHHHHHHHHHHTCHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHh--CC----------------------------------ccHHHHHHHHHHHHHccCHH
Confidence 666666 666666666665432 11 13445666777777777877
Q ss_pred HHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCChHHHHHHHHHhh
Q 047992 553 YSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPN-RGTFLSIILAHSLAGMVDLGKKVFCSIT 628 (868)
Q Consensus 553 ~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 628 (868)
+|...|++.. +.+...|..+...|...|++++|++.|++..+ ..|+ ...+..+...+...|++++|..+|+...
T Consensus 143 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 220 (330)
T 3hym_B 143 QAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDAL 220 (330)
T ss_dssp HHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 7777777654 34556777788888888888888888888887 4454 4677777778888888888888888776
Q ss_pred hhcC-------CCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccC
Q 047992 629 ECYQ-------IIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLE 699 (868)
Q Consensus 629 ~~~~-------~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~ 699 (868)
+... .......+..+..++.+.|++++|.+.++++ ...| +..+|..+...+...|+++.|...++++++++
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 300 (330)
T 3hym_B 221 EKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR 300 (330)
T ss_dssp HHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC
T ss_pred HHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC
Confidence 6431 1334568889999999999999999999987 3333 56689999999999999999999999999999
Q ss_pred CCCchhHHHHHHHH-hhcCCC
Q 047992 700 PGDVLIQRLILQIY-AICGKP 719 (868)
Q Consensus 700 p~~~~~~~~l~~~y-~~~g~~ 719 (868)
|+++..+..|+..| ...|+-
T Consensus 301 p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 301 RDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp SCCHHHHHHHHHHHHTTTTC-
T ss_pred CCchHHHHHHHHHHHHHhCch
Confidence 99999999999988 455554
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.8e-16 Score=170.96 Aligned_cols=295 Identities=15% Similarity=0.075 Sum_probs=244.4
Q ss_pred eehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCC-CHHhHHHHHH
Q 047992 430 ITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYP-NCVTILSVLP 508 (868)
Q Consensus 430 ~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~ 508 (868)
..+..+...+...|++++|...|+++.+.. +.+...|..+...+...|++++|+..|+++... .| +...+..+..
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~ 79 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL--KMDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCcchHHHHHHH
Confidence 456677888999999999999999997764 566789999999999999999999999998864 34 5567778888
Q ss_pred HHhchhchHHHHHHHHHHHHhCCCC----ChhHHHHH------------HHHHHhcCCHHHHHHHHhcCC---CCCceec
Q 047992 509 ACAYLVASNKVKEIHGCVLRRSLES----SLPVMNSL------------IDTYAKSGNIVYSRTIFDGMS---SKDIITW 569 (868)
Q Consensus 509 a~~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~L------------i~~y~k~g~~~~A~~~f~~~~---~~d~~~~ 569 (868)
.+...|+.+.+...+..+++. .| +...+..+ ...|...|++++|.+.|+++. +.+...|
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 157 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELR 157 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHH
Confidence 889999999999999999884 44 34444444 688999999999999999764 5577889
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChh-HH-------
Q 047992 570 NSLICGYVLHGFWHAALDLFDQMKSFGLKP-NRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIE-HY------- 640 (868)
Q Consensus 570 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~y------- 640 (868)
..+...|...|++++|++.|+++.+ ..| +..++..+...+...|+.++|..+|+...+...-.+... .|
T Consensus 158 ~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 235 (359)
T 3ieg_A 158 ELRAECFIKEGEPRKAISDLKAASK--LKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLN 235 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHT--TCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHH
Confidence 9999999999999999999999998 455 457888888899999999999999999887433322221 11
Q ss_pred --HHHHHhhhhcCChHHHHHHHHhC-CCCCC-HH----HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHH
Q 047992 641 --SAMIDLYGRSGKLEEAMEFIEDM-PIEPD-SS----IWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQI 712 (868)
Q Consensus 641 --~~lvd~l~r~g~~~eA~~~i~~~-~~~p~-~~----~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~ 712 (868)
..+...+.+.|++++|.+.++++ ...|+ .. .|..+...+...|+++.|...++++++++|+++..+..++.+
T Consensus 236 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 315 (359)
T 3ieg_A 236 KLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEA 315 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 13367789999999999999987 33343 32 355577788999999999999999999999999999999999
Q ss_pred HhhcCCChhHHHHHHHHHhc
Q 047992 713 YAICGKPEDALKVRKLEREN 732 (868)
Q Consensus 713 y~~~g~~~~a~~~~~~m~~~ 732 (868)
|...|++++|.+..+...+.
T Consensus 316 ~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 316 YLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHhc
Confidence 99999999999998877543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.74 E-value=5.4e-17 Score=176.10 Aligned_cols=255 Identities=13% Similarity=0.074 Sum_probs=182.4
Q ss_pred eehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHH
Q 047992 430 ITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPA 509 (868)
Q Consensus 430 ~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 509 (868)
..+..+...|.+.|++++|...|+++.+.. +.+..+|..+...|...|++++|+..|+++.
T Consensus 65 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al----------------- 125 (368)
T 1fch_A 65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQD--PKHMEAWQYLGTTQAENEQELLAISALRRCL----------------- 125 (368)
T ss_dssp SSHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH-----------------
Confidence 334444445555555555555555544432 3333444444445555555555555554443
Q ss_pred HhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecH----------------
Q 047992 510 CAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWN---------------- 570 (868)
Q Consensus 510 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~---------------- 570 (868)
+. .+.+..++..++..|.+.|++++|.+.|+++. +.+...+.
T Consensus 126 ------------------~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (368)
T 1fch_A 126 ------------------EL-KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKR 186 (368)
T ss_dssp ------------------HH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------C
T ss_pred ------------------hc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHH
Confidence 21 12244556666667777777777777776543 22222232
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhh
Q 047992 571 SLICGYVLHGFWHAALDLFDQMKSFGLKPN---RGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLY 647 (868)
Q Consensus 571 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l 647 (868)
.+.. +...|++++|++.|+++.+ ..|+ ..++..+...+...|++++|..+|+.+.+.. +.+...|..+..++
T Consensus 187 ~~~~-~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~ 261 (368)
T 1fch_A 187 ILGS-LLSDSLFLEVKELFLAAVR--LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--PNDYLLWNKLGATL 261 (368)
T ss_dssp TTHH-HHHHHHHHHHHHHHHHHHH--HSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHH-HhhcccHHHHHHHHHHHHH--hCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHH
Confidence 2333 3488999999999999998 4565 6788888899999999999999999988742 23467889999999
Q ss_pred hhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC-----------chhHHHHHHHHh
Q 047992 648 GRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGD-----------VLIQRLILQIYA 714 (868)
Q Consensus 648 ~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~-----------~~~~~~l~~~y~ 714 (868)
.+.|++++|.+.++++ ...| +..+|..+..++...|+++.|...+++++++.|++ +..|..|+.+|.
T Consensus 262 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 341 (368)
T 1fch_A 262 ANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALS 341 (368)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHH
Confidence 9999999999999987 3344 56689999999999999999999999999999988 789999999999
Q ss_pred hcCCChhHHHHHH
Q 047992 715 ICGKPEDALKVRK 727 (868)
Q Consensus 715 ~~g~~~~a~~~~~ 727 (868)
..|++++|..+.+
T Consensus 342 ~~g~~~~A~~~~~ 354 (368)
T 1fch_A 342 MLGQSDAYGAADA 354 (368)
T ss_dssp HHTCGGGHHHHHT
T ss_pred HhCChHhHHHhHH
Confidence 9999999999865
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=2e-16 Score=168.46 Aligned_cols=262 Identities=14% Similarity=0.046 Sum_probs=209.2
Q ss_pred CCCeeehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHH
Q 047992 426 PPNVITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILS 505 (868)
Q Consensus 426 ~p~~~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 505 (868)
+.+...+..+...+...|++++|.++|+++.+.. +.+...+..++..+...|++++|..+++++...
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----------- 85 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD--PFHASCLPVHIGTLVELNKANELFYLSHKLVDL----------- 85 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-----------
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh-----------
Confidence 3455556666667777777777777777776543 334445555666666666666666666665431
Q ss_pred HHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC-CHHHHHHHHhcCC---CCCceecHHHHHHHHhcCC
Q 047992 506 VLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSG-NIVYSRTIFDGMS---SKDIITWNSLICGYVLHGF 581 (868)
Q Consensus 506 ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g-~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~ 581 (868)
.+.+..++..+...|...| ++++|.+.|++.. +.+...|..+...|...|+
T Consensus 86 -------------------------~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~ 140 (330)
T 3hym_B 86 -------------------------YPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESE 140 (330)
T ss_dssp -------------------------CTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTC
T ss_pred -------------------------CcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccC
Confidence 2235667788889999999 9999999999764 4567789999999999999
Q ss_pred hHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHH
Q 047992 582 WHAALDLFDQMKSFGLKPN-RGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFI 660 (868)
Q Consensus 582 ~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i 660 (868)
+++|++.|+++.+ ..|+ ...+..+...+...|++++|..+|+...+.. +.+...+..+..++.+.|++++|.+.+
T Consensus 141 ~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~ 216 (330)
T 3hym_B 141 HDQAMAAYFTAAQ--LMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA--PEDPFVMHEVGVVAFQNGEWKTAEKWF 216 (330)
T ss_dssp HHHHHHHHHHHHH--HTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHH--hccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcccHHHHHHHH
Confidence 9999999999998 4554 4677778889999999999999999988742 334577889999999999999999999
Q ss_pred HhC----CC-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHH
Q 047992 661 EDM----PI-------EPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLE 729 (868)
Q Consensus 661 ~~~----~~-------~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 729 (868)
+++ +- +.+..+|..+...+...|+++.|...++++++++|+++..+..++.+|...|++++|.+..+..
T Consensus 217 ~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 296 (330)
T 3hym_B 217 LDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTA 296 (330)
T ss_dssp HHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTT
T ss_pred HHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 876 11 3345689999999999999999999999999999999999999999999999999999988743
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.72 E-value=4.5e-16 Score=165.25 Aligned_cols=281 Identities=16% Similarity=0.185 Sum_probs=119.7
Q ss_pred HhcCChhHHHHHHhhcCCCCceeHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHhhCCCChHHHHHHHH
Q 047992 102 AKCGCLDDAREVFEDMRERNLYTWSAMIGAYSRDQRWREVVELFFLMVQDGLFPDDFLFPKILQACGNCGDFEAGKLMHS 181 (868)
Q Consensus 102 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 181 (868)
-+.|++++|.+.+++++.|+ +|..|..++.+.|++++|++.|.+ .+|..+|..++.+|...|++++|...+.
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 47889999999999997765 999999999999999999999975 3688899999999999999999999888
Q ss_pred HHHHhCCCCCcchHHHHHHHHHHcCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCccChhhH
Q 047992 182 LVIKLGMSCVRRVRNSVLAVYVKCGKLIWARRFFESMDEKDGVAWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTF 261 (868)
Q Consensus 182 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~ 261 (868)
...+. .+++.+.+.|+.+|.++|+++++.++++. ++..+|+.+...|...|.+++|...|..+ ..|
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~ 151 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNF 151 (449)
T ss_dssp -------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhH
Confidence 88875 45678899999999999999999988864 67779999999999999999999999977 379
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcccHHHHHHHHhch
Q 047992 262 NILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISACTDL 341 (868)
Q Consensus 262 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~ 341 (868)
..|...+.+.|++++|.+.+.++. ++.+|..++.+|+..|+++.|......+. +.|+ -...++..|.+.
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA~------~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~~ad--~l~~lv~~Yek~ 220 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRLAQMCGLHIV---VHAD--ELEELINYYQDR 220 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHHHHTTCHHHHHHTTTTTT---TCHH--HHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHcC------CchhHHHHHHHHHHcCcHHHHHHHHHHHH---hCHh--hHHHHHHHHHHC
Confidence 999999999999999999999882 78999999999999999999966544321 2233 244566667777
Q ss_pred hhHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHcC--CCHHHHHHHHHhcCC--------CCeehHHHHHHHHHhcCChh
Q 047992 342 KALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKC--EELEAAERVFDMIKD--------KDVYSWNSMIAGYCQAGYCG 411 (868)
Q Consensus 342 ~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~--g~~~~A~~vf~~~~~--------~~~~~~~~li~~~~~~g~~~ 411 (868)
|.++++..+++..+... +-....++-|.-.|++- +++.+..+.|..-.. .+...|..++..|.+.++++
T Consensus 221 G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d 299 (449)
T 1b89_A 221 GYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYD 299 (449)
T ss_dssp TCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHH
T ss_pred CCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHH
Confidence 77777777777666443 34455566666666553 455555555543222 14455666666666666666
Q ss_pred HHHHH
Q 047992 412 KAYEL 416 (868)
Q Consensus 412 ~A~~l 416 (868)
.|...
T Consensus 300 ~A~~t 304 (449)
T 1b89_A 300 NAIIT 304 (449)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66553
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.72 E-value=3e-15 Score=171.10 Aligned_cols=426 Identities=11% Similarity=0.076 Sum_probs=254.6
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCccChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCeeeHHHHH
Q 047992 221 KDGVAWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMI 300 (868)
Q Consensus 221 ~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 300 (868)
.|...|..++. +.+.|++++|..+|+++.+.. +.+...|..++..+.+.|+.++|..+|++..... |+...|...+
T Consensus 11 ~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~ 86 (530)
T 2ooe_A 11 YDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYL 86 (530)
T ss_dssp TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHH
T ss_pred CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHH
Confidence 36778888888 477899999999999988642 3456678888888888999999999999988764 4666777766
Q ss_pred HHH-HhcCChhHHHH----HHHHHHh-CCccCCc-ccHHHHHHHHhc---------hhhHHHHHHHHHHHHHhCCCCCcc
Q 047992 301 SGF-AQNGRTSQALD----LFKEMSF-VGVMPNG-VTITSAISACTD---------LKALAMGMEIHSLAVKMGFTDDVL 364 (868)
Q Consensus 301 ~~~-~~~g~~~~A~~----l~~~m~~-~g~~pd~-~t~~~ll~a~~~---------~~~~~~a~~i~~~~~~~g~~~~~~ 364 (868)
... ...|+.++|.+ +|++... .|..|+. ..|...+..... .|+++.++.++..+++........
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~ 166 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQ 166 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHH
Confidence 533 35677776665 5555443 2444432 233333333222 455555666655555421000011
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHhH------hCC---CCCCee-ehhh
Q 047992 365 VGNSLINMYSKCEELEAAERVFDMIKDKDVYSWNSMIAGYCQAGYCGKAYELFIKMQ------ESD---VPPNVI-TWNV 434 (868)
Q Consensus 365 ~~~~li~~y~~~g~~~~A~~vf~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~------~~g---~~p~~~-t~~~ 434 (868)
++..........|. ..+..++. ...+++.+|..++.++. +.. ++|+.. .+..
T Consensus 167 ~~~~~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~ 228 (530)
T 2ooe_A 167 LWRDYNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQ 228 (530)
T ss_dssp HHHHHHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHH
T ss_pred HHHHHHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHH
Confidence 11111111000000 00111110 01233444444444321 111 122210 0000
Q ss_pred HHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhc----CCh----hHHHHHHHHhhcCCCCCCHHhHHHH
Q 047992 435 LISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQL----GQK----NNALGVFRKMQSSCFYPNCVTILSV 506 (868)
Q Consensus 435 li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~----g~~----~~A~~~~~~m~~~g~~p~~~t~~~l 506 (868)
. ...|...+.....+ ++. ++|..+|++.... .+-+...|...
T Consensus 229 ~-----------------------------~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~ 278 (530)
T 2ooe_A 229 Q-----------------------------VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEA 278 (530)
T ss_dssp H-----------------------------HHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred H-----------------------------HHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHH
Confidence 0 11222222211111 111 2444455544432 11123333333
Q ss_pred HHHHhc-------hhchH-------HHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCc-ee
Q 047992 507 LPACAY-------LVASN-------KVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMS---SKDI-IT 568 (868)
Q Consensus 507 l~a~~~-------~~~~~-------~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~-~~ 568 (868)
...+.. .|+++ .+..++...++.-.+.+..++..++..+.+.|++++|..+|+++. +.+. ..
T Consensus 279 ~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 358 (530)
T 2ooe_A 279 AQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLV 358 (530)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHH
T ss_pred HHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHH
Confidence 333332 35544 556666665542233467788899999999999999999999764 2343 47
Q ss_pred cHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHH-hhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHh
Q 047992 569 WNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR-GTFLSIILA-HSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDL 646 (868)
Q Consensus 569 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~ 646 (868)
|..++..+.+.|+.++|.++|++..+. .|+. ..+...... +...|+.++|+.+|+...+..+- +...+..++++
T Consensus 359 ~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~--~~~~~~~~~~~ 434 (530)
T 2ooe_A 359 YIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD--IPEYVLAYIDY 434 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT--CHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCC--CHHHHHHHHHH
Confidence 998888888999999999999999884 4442 333333222 23589999999999988875432 45678899999
Q ss_pred hhhcCChHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 047992 647 YGRSGKLEEAMEFIEDM----PIEPD--SSIWEALLTACRIHGNIDLAVLAIERLFDLEPGD 702 (868)
Q Consensus 647 l~r~g~~~eA~~~i~~~----~~~p~--~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~ 702 (868)
+.+.|+.++|..++++. |..|+ ..+|...+.....+|+.+.+..+.+++++..|++
T Consensus 435 ~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~~ 496 (530)
T 2ooe_A 435 LSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 496 (530)
T ss_dssp HTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHHH
T ss_pred HHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCchh
Confidence 99999999999999887 44443 4589999999999999999999999999999853
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.71 E-value=2.2e-16 Score=167.72 Aligned_cols=379 Identities=13% Similarity=0.150 Sum_probs=184.6
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcccHHHHHHHHhchhhHHHHHH
Q 047992 270 QLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISACTDLKALAMGME 349 (868)
Q Consensus 270 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~ 349 (868)
+.|++++|.+.++++. +..+|..++.++.+.|++++|++.|.+. +|..+|..++.++...|+++++..
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 5667777777777773 3358888888888888888888888653 577788888888888888888888
Q ss_pred HHHHHHHhCCCCCccHHHHHHHHHHcCCCHHHHHHHHHhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCe
Q 047992 350 IHSLAVKMGFTDDVLVGNSLINMYSKCEELEAAERVFDMIKDKDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNV 429 (868)
Q Consensus 350 i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~vf~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 429 (868)
.+....+. .+++.+.+.|+.+|.++|+++++.++++ .|+..+|+.+...|...|.+++|...|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT---CC----------------CTTTHHHHHHHT---------
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------
Confidence 77766663 4456778888889999999988887775 366778999999999999999999999876
Q ss_pred eehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHH
Q 047992 430 ITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPA 509 (868)
Q Consensus 430 ~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 509 (868)
..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+. +.|+. ...++..
T Consensus 149 ~n~~~LA~~L~~Lg~yq~AVea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~~ad~--l~~lv~~ 216 (449)
T 1b89_A 149 SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHADE--LEELINY 216 (449)
T ss_dssp TCHHHHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT---TCHHH--HHHHHHH
T ss_pred hhHHHHHHHHHHhccHHHHHHHHHHc-------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH---hCHhh--HHHHHHH
Confidence 37888899999999999999999888 367888999999999999999866554432 44444 4467778
Q ss_pred HhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh--cCCHHHHHHHHhcCC---C-----CCceecHHHHHHHHhc
Q 047992 510 CAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAK--SGNIVYSRTIFDGMS---S-----KDIITWNSLICGYVLH 579 (868)
Q Consensus 510 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k--~g~~~~A~~~f~~~~---~-----~d~~~~~~li~~~~~~ 579 (868)
+.+.|..+.+..+++..+... +....+++-|.-.|+| -|++.++.+.|..-. + .+...|.-+.-.|...
T Consensus 217 Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~ 295 (449)
T 1b89_A 217 YQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKY 295 (449)
T ss_dssp HHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhh
Confidence 888888888888888777533 3467778888888876 467888888887432 2 3678999999999999
Q ss_pred CChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHhhccCChHHHHHHHHH--------hhhhcCCCCChhHHHHHHHhhhhc
Q 047992 580 GFWHAALDLFDQMKSF-GLKPNRGTFLSIILAHSLAGMVDLGKKVFCS--------ITECYQIIPMIEHYSAMIDLYGRS 650 (868)
Q Consensus 580 g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~--------m~~~~~~~p~~~~y~~lvd~l~r~ 650 (868)
|+++.|+.. |.+. ...-++..|.-++.--...-.+-+|..++-. +.. .+.|.++| +-.|..+.+.
T Consensus 296 ~e~d~A~~t---m~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p~~l~~ll~--~l~~~ld~-~r~v~~~~~~ 369 (449)
T 1b89_A 296 EEYDNAIIT---MMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLM--VLSPRLDH-TRAVNYFSKV 369 (449)
T ss_dssp TCHHHHHHH---HHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCGGGHHHHHH--HHGGGCCH-HHHHHHHHHT
T ss_pred chHHHHHHH---HHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCHHHHHHHHH--HHHhccCc-HHHHHHHHHc
Confidence 999999874 4442 1222345555444333333333344443321 111 22344443 4566777777
Q ss_pred CChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047992 651 GKLEEAMEFIEDMPIEPDSSIWEALLTACRIHGNIDLAVLAIE 693 (868)
Q Consensus 651 g~~~eA~~~i~~~~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~ 693 (868)
|.+.=...+++.+.-..+..+-.+|-..+....|++.-+...+
T Consensus 370 ~~l~l~~~yl~~v~~~n~~~vnealn~l~ieeed~~~lr~si~ 412 (449)
T 1b89_A 370 KQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSID 412 (449)
T ss_dssp TCTTTTHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 7777777777666444556666667677777777766555444
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.69 E-value=2.4e-14 Score=163.56 Aligned_cols=209 Identities=12% Similarity=0.034 Sum_probs=167.5
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHHHh-------cCCHH-------HHHHHHhcCC----CCCceecHHHHHHHHhc
Q 047992 518 KVKEIHGCVLRRSLESSLPVMNSLIDTYAK-------SGNIV-------YSRTIFDGMS----SKDIITWNSLICGYVLH 579 (868)
Q Consensus 518 ~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k-------~g~~~-------~A~~~f~~~~----~~d~~~~~~li~~~~~~ 579 (868)
.+..++..+++. .+.++.+|..++..+.+ .|+++ +|+.+|++.. +.+...|..++..+...
T Consensus 256 ~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 256 RVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 556677777774 34478889999988886 79987 8999999764 34577899999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCC-hhHHHHHHHh-hhhcCChHH
Q 047992 580 GFWHAALDLFDQMKSFGLKPNR--GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPM-IEHYSAMIDL-YGRSGKLEE 655 (868)
Q Consensus 580 g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lvd~-l~r~g~~~e 655 (868)
|+.++|.++|+++++ +.|+. ..|........+.|.+++|+.+|+...+. .|. ...|.....+ +...|+.++
T Consensus 335 g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~---~~~~~~~~~~~a~~~~~~~~~~~~ 409 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTAALMEYYCSKDKSV 409 (530)
T ss_dssp TCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---TTCCTHHHHHHHHHHHHHTCCHHH
T ss_pred CCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---cCCchHHHHHHHHHHHHHcCChhH
Confidence 999999999999999 67764 46888888888899999999999998874 333 3334333322 336899999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCch----hHHHHHHHHhhcCCChhHHHHHHHH
Q 047992 656 AMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVL----IQRLILQIYAICGKPEDALKVRKLE 729 (868)
Q Consensus 656 A~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~----~~~~l~~~y~~~g~~~~a~~~~~~m 729 (868)
|.+++++. ...| ++.+|..++......|+.+.|+.+++++++..|.++. .|..........|+.+++.++.+.+
T Consensus 410 A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 410 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 489 (530)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999977 3334 5679999999999999999999999999999887665 6777788888899999999998877
Q ss_pred Hhc
Q 047992 730 REN 732 (868)
Q Consensus 730 ~~~ 732 (868)
.+.
T Consensus 490 ~~~ 492 (530)
T 2ooe_A 490 FTA 492 (530)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.1e-17 Score=187.05 Aligned_cols=160 Identities=14% Similarity=0.200 Sum_probs=123.9
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHH---HcCCccChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCeeeHHHH
Q 047992 223 GVAWNSMISGYFQIGENDEAHRLFDKMC---REEIKLGVVTFNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCM 299 (868)
Q Consensus 223 ~~~~~~li~~~~~~g~~~~A~~l~~~m~---~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 299 (868)
..+||+||.+|++.|++++|.++|.+|. ..|+.||+.|||+||++|++.|++++|.++|++|.+.|+.||++|||+|
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 4578899999999999999999987765 4578899999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCh-hHHHHHHHHHHhCCccCCcccHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCC------ccHHHHHHHH
Q 047992 300 ISGFAQNGRT-SQALDLFKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLAVKMGFTDD------VLVGNSLINM 372 (868)
Q Consensus 300 i~~~~~~g~~-~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~------~~~~~~li~~ 372 (868)
|.++++.|+. ++|.++|++|...|+.||..||++++.++.+.+-++....+ ..++.|+ +.+...|.+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv-----~P~f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV-----KPTFSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGG-----CCCCCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHh-----CcccCCCCCCcccccchHHHHHH
Confidence 9999998875 78889999999999999999998888655443333222221 2345544 5566678888
Q ss_pred HHcCC---------CHHHHHHHHH
Q 047992 373 YSKCE---------ELEAAERVFD 387 (868)
Q Consensus 373 y~~~g---------~~~~A~~vf~ 387 (868)
|.+.+ ..++-...|+
T Consensus 282 ~s~d~~~s~pk~~~~~~~L~~~~~ 305 (1134)
T 3spa_A 282 YAKDGRVSYPKLHLPLKTLQCLFE 305 (1134)
T ss_dssp HCCCSCCCCCCCSSCHHHHHHHHH
T ss_pred HccCCCCcCccccCCHHHHHHHHH
Confidence 88766 2455555554
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.68 E-value=4e-16 Score=169.18 Aligned_cols=231 Identities=12% Similarity=0.035 Sum_probs=187.0
Q ss_pred CeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 047992 464 NTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLID 543 (868)
Q Consensus 464 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~ 543 (868)
+...|..+...+.+.|++++|+..|+++... .+.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~------------------------------------~p~~~~~~~~lg~ 107 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQ------------------------------------DPGDAEAWQFLGI 107 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH------------------------------------CTTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHh------------------------------------CcCCHHHHHHHHH
Confidence 4455777777777778888887777777532 1235567788889
Q ss_pred HHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HH----------HHHHH
Q 047992 544 TYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRG-TF----------LSIIL 609 (868)
Q Consensus 544 ~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~----------~~ll~ 609 (868)
+|.+.|++++|...|+++. +.+..+|..+...|...|++++|++.|+++.+ ..|+.. .+ ..+..
T Consensus 108 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~l~~ 185 (365)
T 4eqf_A 108 TQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIK--QNPKYKYLVKNKKGSPGLTRRMSK 185 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCHHHHCC----------------
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHH--hCccchHHHhhhccchHHHHHHHH
Confidence 9999999999999998764 45678899999999999999999999999988 556542 22 23466
Q ss_pred HhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 047992 610 AHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDL 687 (868)
Q Consensus 610 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~ 687 (868)
.+...|++++|..+|+.+.+..+..++...+..+..+|.+.|++++|.+.++++ ...| +..+|..+..++...|+++.
T Consensus 186 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 265 (365)
T 4eqf_A 186 SPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEE 265 (365)
T ss_dssp ---CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 888999999999999999886554446788999999999999999999999987 3334 57799999999999999999
Q ss_pred HHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHHhc
Q 047992 688 AVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLEREN 732 (868)
Q Consensus 688 a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 732 (868)
|...++++++++|+++.++..|+.+|...|++++|.+..+...+.
T Consensus 266 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 310 (365)
T 4eqf_A 266 AVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSL 310 (365)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999987776543
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.68 E-value=2e-15 Score=157.19 Aligned_cols=181 Identities=9% Similarity=0.019 Sum_probs=106.4
Q ss_pred hchhchHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCceecHHHHHHHHhcCChHHHHHHH
Q 047992 511 AYLVASNKVKEIHGCVLRRSLES-SLPVMNSLIDTYAKSGNIVYSRTIFDGMSSKDIITWNSLICGYVLHGFWHAALDLF 589 (868)
Q Consensus 511 ~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~ 589 (868)
...++.+.+.+.+..++..+..| +..++..+...|.+.|++++|.+.|++ +.+...+..++..|.+.|+.++|++.|
T Consensus 76 ~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 76 ASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp HCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 33333333333333333333222 455566777888899999999999988 567778888888999999999999999
Q ss_pred HHHHHCCCCCCHHHHH---HHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhCCCC
Q 047992 590 DQMKSFGLKPNRGTFL---SIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPIE 666 (868)
Q Consensus 590 ~~m~~~g~~p~~~t~~---~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~~~~ 666 (868)
+++.+ ..|+..... +.+..+...|++++|..+|+.+.+. .+
T Consensus 154 ~~~~~--~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~----------------------------------~p 197 (291)
T 3mkr_A 154 KKMQD--QDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK----------------------------------CS 197 (291)
T ss_dssp HHHHH--HCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH----------------------------------SC
T ss_pred HHHHh--hCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh----------------------------------CC
Confidence 99988 456643111 1112222335555555555555443 12
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhH-HHHHHHH
Q 047992 667 PDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDA-LKVRKLE 729 (868)
Q Consensus 667 p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a-~~~~~~m 729 (868)
++..+|..+..++...|+++.|+..++++++++|+++.++..++.++...|+++++ .++++.+
T Consensus 198 ~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~ 261 (291)
T 3mkr_A 198 PTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQL 261 (291)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 33445555555555555555555555555555555555555555555555555542 3444333
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.4e-14 Score=160.55 Aligned_cols=366 Identities=12% Similarity=-0.014 Sum_probs=230.0
Q ss_pred ChhhHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHh----cCChhHHHHHHHHHHhCCccCCc
Q 047992 257 GVVTFNILIRSYNQ----LGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQ----NGRTSQALDLFKEMSFVGVMPNG 328 (868)
Q Consensus 257 ~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~ 328 (868)
+...+..|...|.. .++.++|...|++..+.| +...+..|...|.. .+++++|++.|++..+.|
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----- 109 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG----- 109 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-----
Confidence 44555555555555 556666666666555442 34455555555555 555555555555554332
Q ss_pred ccHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHc----CCCHHHHHHHHHhcCCC-CeehHHHHHHH
Q 047992 329 VTITSAISACTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSK----CEELEAAERVFDMIKDK-DVYSWNSMIAG 403 (868)
Q Consensus 329 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~vf~~~~~~-~~~~~~~li~~ 403 (868)
+......|..+|.. .+++++|...|+...+. +..++..+...
T Consensus 110 ---------------------------------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~ 156 (490)
T 2xm6_A 110 ---------------------------------LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDA 156 (490)
T ss_dssp ---------------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ---------------------------------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 22233334444444 45555555555544332 33444555555
Q ss_pred HHh----cCChhHHHHHHHHhHhCCCCCCeeehhhHHHHHHh----cCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHH
Q 047992 404 YCQ----AGYCGKAYELFIKMQESDVPPNVITWNVLISGYIQ----NGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGY 475 (868)
Q Consensus 404 ~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~ 475 (868)
|.. .++.++|++.|++..+.| +...+..|...|.. .+++++|..+|++..+.+ +...+..+...|
T Consensus 157 y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~y 229 (490)
T 2xm6_A 157 YFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG----DELGQLHLADMY 229 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHH
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHH
Confidence 554 455666666666665554 44555555566655 566666666666655432 334444555555
Q ss_pred Hh----cCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----
Q 047992 476 QQ----LGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAK---- 547 (868)
Q Consensus 476 ~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k---- 547 (868)
.. .+++++|...|++..+.| +......|..+|.+
T Consensus 230 ~~g~g~~~~~~~A~~~~~~a~~~~--------------------------------------~~~a~~~lg~~y~~g~~~ 271 (490)
T 2xm6_A 230 YFGIGVTQDYTQSRVLFSQSAEQG--------------------------------------NSIAQFRLGYILEQGLAG 271 (490)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHTTT--------------------------------------CHHHHHHHHHHHHHTTTS
T ss_pred HcCCCCCCCHHHHHHHHHHHHHCC--------------------------------------CHHHHHHHHHHHHCCCCC
Confidence 44 455556666555554322 23344455666666
Q ss_pred cCCHHHHHHHHhcCCC-CCceecHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccC---ChH
Q 047992 548 SGNIVYSRTIFDGMSS-KDIITWNSLICGYVLH-----GFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAG---MVD 618 (868)
Q Consensus 548 ~g~~~~A~~~f~~~~~-~d~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g---~~~ 618 (868)
.++.++|.+.|++..+ .+..++..+...|... ++.++|+..|++..+.| +...+..+...+...| +.+
T Consensus 272 ~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~ 348 (490)
T 2xm6_A 272 AKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHK 348 (490)
T ss_dssp SCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHH
Confidence 7788888888876653 4556677777777776 88899999999888854 3345555555665556 788
Q ss_pred HHHHHHHHhhhhcCCCCChhHHHHHHHhhhh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHH
Q 047992 619 LGKKVFCSITECYQIIPMIEHYSAMIDLYGR----SGKLEEAMEFIEDMPIEPDSSIWEALLTACRI----HGNIDLAVL 690 (868)
Q Consensus 619 ~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r----~g~~~eA~~~i~~~~~~p~~~~w~~ll~a~~~----~~~~~~a~~ 690 (868)
+|..+|+...+. .+...+..+..+|.. .+++++|.+.+++.--..++..|..|...+.. .+|.+.|..
T Consensus 349 ~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 424 (490)
T 2xm6_A 349 KAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWA 424 (490)
T ss_dssp HHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 899999888763 356677778888877 88999999999987333467788888888877 899999999
Q ss_pred HHHHHhccCCC---CchhHHHHHHHHhh
Q 047992 691 AIERLFDLEPG---DVLIQRLILQIYAI 715 (868)
Q Consensus 691 ~~~~~~~l~p~---~~~~~~~l~~~y~~ 715 (868)
.++++++.+|+ ++.+...|+.++..
T Consensus 425 ~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 425 WFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 99999999954 77777778777664
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.67 E-value=1.9e-15 Score=163.86 Aligned_cols=255 Identities=13% Similarity=0.098 Sum_probs=200.5
Q ss_pred HhcCCHHHHHH-HHHhcccCCCCCC--CeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhch
Q 047992 440 IQNGNEDEAVD-LFQRMGKNDKVKR--NTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVAS 516 (868)
Q Consensus 440 ~~~g~~~~A~~-~f~~m~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 516 (868)
...|++++|.. .|++........| +...|..+...+.+.|++++|+..|+++... .|
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p------------------ 95 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ--DP------------------ 95 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS--CT------------------
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CC------------------
Confidence 34578888888 8886654432222 3566777888888888888888888887643 12
Q ss_pred HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHHH
Q 047992 517 NKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQMK 593 (868)
Q Consensus 517 ~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~ 593 (868)
.+..++..+...|.+.|++++|...|+++. +.+..+|..+...|...|++++|++.|+++.
T Consensus 96 ----------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 159 (368)
T 1fch_A 96 ----------------KHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWL 159 (368)
T ss_dssp ----------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ----------------CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 255567788899999999999999999764 5678899999999999999999999999999
Q ss_pred HCCCCCCHHHHHH----------------HHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHH
Q 047992 594 SFGLKPNRGTFLS----------------IILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAM 657 (868)
Q Consensus 594 ~~g~~p~~~t~~~----------------ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~ 657 (868)
. ..|+...... .+..+...|++++|..+|+.+.+.....++...+..+..++.+.|++++|.
T Consensus 160 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~ 237 (368)
T 1fch_A 160 R--YTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAV 237 (368)
T ss_dssp H--TSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred H--hCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 8 4565432221 234444899999999999999886554445788999999999999999999
Q ss_pred HHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHHhc
Q 047992 658 EFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLEREN 732 (868)
Q Consensus 658 ~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 732 (868)
+.++++ ...| +..+|..+...+...|+++.|...++++++++|+++.++..++.+|...|++++|.+..+...+.
T Consensus 238 ~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 238 DCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 999987 3344 46799999999999999999999999999999999999999999999999999999987776543
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.66 E-value=3e-16 Score=170.14 Aligned_cols=256 Identities=12% Similarity=0.047 Sum_probs=173.1
Q ss_pred eehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHH
Q 047992 430 ITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPA 509 (868)
Q Consensus 430 ~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 509 (868)
..+..+...+.+.|++++|...|+++.+.. +.+..+|..+...|.+.|++++|+..|+++... .|
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p----------- 130 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQD--PGDAEAWQFLGITQAENENEQAAIVALQRCLEL--QP----------- 130 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT-----------
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CC-----------
Confidence 335555555555566666666665554433 344555556666666666666666666555431 11
Q ss_pred HhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CC----------ceecHHHHHHH
Q 047992 510 CAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMSS---KD----------IITWNSLICGY 576 (868)
Q Consensus 510 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~d----------~~~~~~li~~~ 576 (868)
.+..++..++..|.+.|++++|...|+++.. .+ ...++.+...|
T Consensus 131 -----------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~ 187 (365)
T 4eqf_A 131 -----------------------NNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSP 187 (365)
T ss_dssp -----------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC------------------
T ss_pred -----------------------CCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHH
Confidence 1233445555555666666666666555432 11 22334457778
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCCh
Q 047992 577 VLHGFWHAALDLFDQMKSFGLKPN---RGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKL 653 (868)
Q Consensus 577 ~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~ 653 (868)
...|++++|++.|+++.+ ..|+ ..++..+...+...|++++|..+|+.+.+.. +.+...|..+..+|.+.|++
T Consensus 188 ~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~ 263 (365)
T 4eqf_A 188 VDSSVLEGVKELYLEAAH--QNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR--PEDYSLWNRLGATLANGDRS 263 (365)
T ss_dssp -CCHHHHHHHHHHHHHHH--HSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCH
T ss_pred hhhhhHHHHHHHHHHHHH--hCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCH
Confidence 888888888888888888 3454 5777888888888899999999988887742 23466788899999999999
Q ss_pred HHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC------------CchhHHHHHHHHhhcCCC
Q 047992 654 EEAMEFIEDM-PIEPD-SSIWEALLTACRIHGNIDLAVLAIERLFDLEPG------------DVLIQRLILQIYAICGKP 719 (868)
Q Consensus 654 ~eA~~~i~~~-~~~p~-~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~------------~~~~~~~l~~~y~~~g~~ 719 (868)
++|.+.++++ ...|+ ..+|..+..++...|+++.|...+++++++.|+ +...|..|+.+|...|+.
T Consensus 264 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 343 (365)
T 4eqf_A 264 EEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQP 343 (365)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcH
Confidence 9999999887 34454 668999999999999999999999999999987 467889999999999999
Q ss_pred hhHHHHHH
Q 047992 720 EDALKVRK 727 (868)
Q Consensus 720 ~~a~~~~~ 727 (868)
+.+.++.+
T Consensus 344 ~~a~~~~~ 351 (365)
T 4eqf_A 344 ELFQAANL 351 (365)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 99888754
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.6e-14 Score=162.49 Aligned_cols=363 Identities=11% Similarity=0.022 Sum_probs=231.5
Q ss_pred CccHHHHHHHHHHcCCCHHHHHHHHHhcCC------------CCeehHHHHHHHHHhcCChhHHHHHHHHhHhC-----C
Q 047992 362 DVLVGNSLINMYSKCEELEAAERVFDMIKD------------KDVYSWNSMIAGYCQAGYCGKAYELFIKMQES-----D 424 (868)
Q Consensus 362 ~~~~~~~li~~y~~~g~~~~A~~vf~~~~~------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g 424 (868)
....+|.|...|...|+.++|.+.|++..+ ...++|+.+...|...|++++|...+++..+. +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 345677777778888888888777765421 23457888888888888888888888776532 1
Q ss_pred -CCC-CeeehhhHHHHHHhc--CCHHHHHHHHHhcccCCCCCCCeeehhhhHHH---HHhcCChhHHHHHHHHhhcCCCC
Q 047992 425 -VPP-NVITWNVLISGYIQN--GNEDEAVDLFQRMGKNDKVKRNTASWNSLIAG---YQQLGQKNNALGVFRKMQSSCFY 497 (868)
Q Consensus 425 -~~p-~~~t~~~li~~~~~~--g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g~~ 497 (868)
..+ ...++..+..++.+. +++++|...|++..+.. |.++..+..+... +...++.++|++.+++... +.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~--p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~--l~ 205 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK--PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIR--LN 205 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHH--HC
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh--cC
Confidence 011 122344444444443 46889999999887654 3445555555544 3446777888888888765 34
Q ss_pred CC-HHhHHHHHHHHh----chhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCceec
Q 047992 498 PN-CVTILSVLPACA----YLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITW 569 (868)
Q Consensus 498 p~-~~t~~~ll~a~~----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~ 569 (868)
|+ ...+..+...+. ..+..+.+.+.+..+++.. +.+..++..+...|.+.|++++|...|++.. +.+...|
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 284 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLH 284 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHH
Confidence 44 333333333333 3356677888888777742 3367778889999999999999999998764 4456667
Q ss_pred HHHHHHHHhc-------------------CChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhh
Q 047992 570 NSLICGYVLH-------------------GFWHAALDLFDQMKSFGLKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITE 629 (868)
Q Consensus 570 ~~li~~~~~~-------------------g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 629 (868)
..+...|... +..++|+..|++..+ ..|+. .++..+...+...|++++|..+|+...+
T Consensus 285 ~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~ 362 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADE--ANDNLFRVCSILASLHALADQYEEAEYYFQKEFS 362 (472)
T ss_dssp HHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHH--HCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhh--cCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHh
Confidence 7776665432 335778888888887 55654 6777888889999999999999998876
Q ss_pred hcCCCCChh----HHHHHHH-hhhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 047992 630 CYQIIPMIE----HYSAMID-LYGRSGKLEEAMEFIEDM-PIEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDV 703 (868)
Q Consensus 630 ~~~~~p~~~----~y~~lvd-~l~r~g~~~eA~~~i~~~-~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~ 703 (868)
+.|+.. .+..+.. .+...|+.++|++.+++. .+.|+...+... .+.++.++++.++.+|+++
T Consensus 363 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~---------~~~l~~~~~~~l~~~p~~~ 430 (472)
T 4g1t_A 363 ---KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM---------KDKLQKIAKMRLSKNGADS 430 (472)
T ss_dssp ---SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH---------HHHHHHHHHHHHHHCC-CT
T ss_pred ---cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH---------HHHHHHHHHHHHHhCCCCH
Confidence 233322 1223333 235689999999999887 677776554433 3456678889999999999
Q ss_pred hhHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCCCcccEE
Q 047992 704 LIQRLILQIYAICGKPEDALKVRKLERENTRRNSFGQCWI 743 (868)
Q Consensus 704 ~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~g~s~i 743 (868)
.+|..|+.+|...|++++|.+..+...+.|-.-....||+
T Consensus 431 ~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 431 EALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp THHHHHHHHHHHHHHCC-----------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 9999999999999999999998887766654444445554
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.2e-13 Score=152.55 Aligned_cols=350 Identities=13% Similarity=-0.008 Sum_probs=251.2
Q ss_pred CccHHHHHHHHHHc----CCCHHHHHHHHHhcCC-CCeehHHHHHHHHHh----cCChhHHHHHHHHhHhCCCCCCeeeh
Q 047992 362 DVLVGNSLINMYSK----CEELEAAERVFDMIKD-KDVYSWNSMIAGYCQ----AGYCGKAYELFIKMQESDVPPNVITW 432 (868)
Q Consensus 362 ~~~~~~~li~~y~~----~g~~~~A~~vf~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~ 432 (868)
+......|..+|.. .+++++|...|+...+ .+..++..+...|.. .++.++|++.|++..+.| +...+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 114 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQ 114 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 34444555555555 5666666666665433 344556666666666 666667777666666554 44555
Q ss_pred hhHHHHHHh----cCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHh----cCChhHHHHHHHHhhcCCCCCCHHhHH
Q 047992 433 NVLISGYIQ----NGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQ----LGQKNNALGVFRKMQSSCFYPNCVTIL 504 (868)
Q Consensus 433 ~~li~~~~~----~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~ 504 (868)
..|...|.. .+++++|...|++..+.+ +...+..|...|.. .++.++|++.|++..+.| +...+.
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~ 187 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQG----RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCN 187 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 556666665 566777777777665432 44555566666665 566777777777666543 333444
Q ss_pred HHHHHHhc----hhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----cCCHHHHHHHHhcCC-CCCceecHHHHHH
Q 047992 505 SVLPACAY----LVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAK----SGNIVYSRTIFDGMS-SKDIITWNSLICG 575 (868)
Q Consensus 505 ~ll~a~~~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k----~g~~~~A~~~f~~~~-~~d~~~~~~li~~ 575 (868)
.+-..+.. .++.+.+...+....+.+ ++.....|..+|.. .++.++|.+.|++.. ..+..++..+...
T Consensus 188 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~ 264 (490)
T 2xm6_A 188 QLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYI 264 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 44444443 566777777777766643 56677788888886 899999999999765 4566778888888
Q ss_pred HHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcc-----CChHHHHHHHHHhhhhcCCCCChhHHHHHHHh
Q 047992 576 YVL----HGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLA-----GMVDLGKKVFCSITECYQIIPMIEHYSAMIDL 646 (868)
Q Consensus 576 ~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~ 646 (868)
|.. .++.++|++.|++..+.| +...+..+...+... ++.++|..+|+...+. .+...+..+..+
T Consensus 265 y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~ 337 (490)
T 2xm6_A 265 LEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----GDATAQANLGAI 337 (490)
T ss_dssp HHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----TCHHHHHHHHHH
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----CCHHHHHHHHHH
Confidence 887 899999999999998754 344556666666666 8999999999988773 234567778888
Q ss_pred hhhcC---ChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhh----
Q 047992 647 YGRSG---KLEEAMEFIEDMPIEPDSSIWEALLTACRI----HGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAI---- 715 (868)
Q Consensus 647 l~r~g---~~~eA~~~i~~~~~~p~~~~w~~ll~a~~~----~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~---- 715 (868)
|.+.| ++++|.+.+++.--..++..|..|...+.. .+|.+.|...++++.+.+ ++.++..|+.+|..
T Consensus 338 y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~ 415 (490)
T 2xm6_A 338 YFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGV 415 (490)
T ss_dssp HHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSS
T ss_pred HHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCC
Confidence 87767 889999999988434678889999999888 899999999999999865 68899999999999
Q ss_pred cCCChhHHHHHHHHHhcC
Q 047992 716 CGKPEDALKVRKLERENT 733 (868)
Q Consensus 716 ~g~~~~a~~~~~~m~~~~ 733 (868)
.++.++|.+..+...+.+
T Consensus 416 ~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 416 ERDYVQAWAWFDTASTND 433 (490)
T ss_dssp CCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCC
Confidence 899999999888777665
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.63 E-value=4.3e-15 Score=157.88 Aligned_cols=254 Identities=11% Similarity=0.038 Sum_probs=176.7
Q ss_pred hhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHh
Q 047992 432 WNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACA 511 (868)
Q Consensus 432 ~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 511 (868)
+..+...+...|++++|..+|+++.+.. +.+...|..+...+...|++++|...|+++...
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----------------- 84 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAA--PEREEAWRSLGLTQAENEKDGLAIIALNHARML----------------- 84 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----------------
Confidence 3344444455555555555555544332 233344444455555555555555555544321
Q ss_pred chhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHH--------------HH
Q 047992 512 YLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSL--------------IC 574 (868)
Q Consensus 512 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~l--------------i~ 574 (868)
.+.+..++..+...|.+.|++++|.+.|+++. +.+...+..+ ..
T Consensus 85 -------------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (327)
T 3cv0_A 85 -------------------DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSED 145 (327)
T ss_dssp -------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------
T ss_pred -------------------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHh
Confidence 11234445556666666666666666666543 2223333332 22
Q ss_pred -HHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCC
Q 047992 575 -GYVLHGFWHAALDLFDQMKSFGLKP-NRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGK 652 (868)
Q Consensus 575 -~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~ 652 (868)
.+...|++++|++.|+++.+. .| +...+..+...+...|++++|..+|+.+.+.. +.+...+..+..++.+.|+
T Consensus 146 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~ 221 (327)
T 3cv0_A 146 FFFAAPNEYRECRTLLHAALEM--NPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR--PDDAQLWNKLGATLANGNR 221 (327)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCC
Confidence 367788899999999999884 45 45778888888999999999999999988742 2346778899999999999
Q ss_pred hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC------------CchhHHHHHHHHhhcCC
Q 047992 653 LEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPG------------DVLIQRLILQIYAICGK 718 (868)
Q Consensus 653 ~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~------------~~~~~~~l~~~y~~~g~ 718 (868)
+++|.+.++++ ...| +..+|..+...+...|+++.|...+++++++.|+ ++..+..++.+|...|+
T Consensus 222 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 301 (327)
T 3cv0_A 222 PQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNR 301 (327)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCC
Confidence 99999999987 3334 5678999999999999999999999999999999 78999999999999999
Q ss_pred ChhHHHHHH
Q 047992 719 PEDALKVRK 727 (868)
Q Consensus 719 ~~~a~~~~~ 727 (868)
+++|..+.+
T Consensus 302 ~~~A~~~~~ 310 (327)
T 3cv0_A 302 PDLVELTYA 310 (327)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHH
Confidence 999998754
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=3.9e-14 Score=159.29 Aligned_cols=391 Identities=14% Similarity=0.029 Sum_probs=210.6
Q ss_pred cChhhHHHHHHHHHhcCChHHHHHHHHHHHhc-----C--CCC-CeeeHHHHHHHHHhcCChhHHHHHHHHHHhCC---c
Q 047992 256 LGVVTFNILIRSYNQLGQCDVAMEMVKRMESL-----G--ITP-DVFTWTCMISGFAQNGRTSQALDLFKEMSFVG---V 324 (868)
Q Consensus 256 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g--~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~ 324 (868)
.....||.|...|...|+.++|++.|++..+. + ..| ...+|+.+...|...|++++|...+++..... .
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34567888888888888888888888776432 1 112 34677777888888888888888777664311 0
Q ss_pred cCCcccHHHHHHHHhchhhHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHc--CCCHHHHHHHHHhcCC--C-CeehHHH
Q 047992 325 MPNGVTITSAISACTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSK--CEELEAAERVFDMIKD--K-DVYSWNS 399 (868)
Q Consensus 325 ~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~--~g~~~~A~~vf~~~~~--~-~~~~~~~ 399 (868)
.|.. .....++..+..++.+ .+++++|...|++..+ | ++..+..
T Consensus 129 ~~~~-------------------------------~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~ 177 (472)
T 4g1t_A 129 SPYR-------------------------------IESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSG 177 (472)
T ss_dssp CSSC-------------------------------CCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred cccc-------------------------------hhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 0000 0011122222222222 3346666666665432 2 3334444
Q ss_pred HHHH---HHhcCChhHHHHHHHHhHhCCCCCCeeehhhHHHHHH----hcCCHHHHHHHHHhcccCCCCCCCeeehhhhH
Q 047992 400 MIAG---YCQAGYCGKAYELFIKMQESDVPPNVITWNVLISGYI----QNGNEDEAVDLFQRMGKNDKVKRNTASWNSLI 472 (868)
Q Consensus 400 li~~---~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~----~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li 472 (868)
+... +...++.++|++.|++..+.. +.+..++..+...+. ..|++++|.+.+++..... +.+...+..+.
T Consensus 178 ~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~--~~~~~~~~~lg 254 (472)
T 4g1t_A 178 LAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA--PGVTDVLRSAA 254 (472)
T ss_dssp HHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC--SSCHHHHHHHH
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC--ccHHHHHHHHH
Confidence 4333 334566777777777776553 223344444443333 3466778888888776543 55666778888
Q ss_pred HHHHhcCChhHHHHHHHHhhcCCCCCCHHh-HHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCH
Q 047992 473 AGYQQLGQKNNALGVFRKMQSSCFYPNCVT-ILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNI 551 (868)
Q Consensus 473 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~ 551 (868)
..|...|++++|+..+++..+ ..|+... +..+-..+...+ .... . . ............+..
T Consensus 255 ~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~y~~~~-----~~~~----~--~-----~~~~~~~~~~~~~~~ 316 (472)
T 4g1t_A 255 KFYRRKDEPDKAIELLKKALE--YIPNNAYLHCQIGCCYRAKV-----FQVM----N--L-----RENGMYGKRKLLELI 316 (472)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHH-----HHHH----H--C-----------CHHHHHHHH
T ss_pred HHHHHcCchHHHHHHHHHHHH--hCCChHHHHHHHHHHHHHHH-----HHhh----h--H-----HHHHHHHHHHHHhhH
Confidence 888888888888888888764 3454332 222211111100 0000 0 0 000111111122345
Q ss_pred HHHHHHHhcC---CCCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHH-HhhccCChHHHHHHHH
Q 047992 552 VYSRTIFDGM---SSKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRG--TFLSIIL-AHSLAGMVDLGKKVFC 625 (868)
Q Consensus 552 ~~A~~~f~~~---~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~-a~~~~g~~~~a~~~~~ 625 (868)
+.|...|++. .+.+..+|..+...|...|++++|++.|++.++....|... .+..+.. ...+.|+.++|+..|.
T Consensus 317 ~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~ 396 (472)
T 4g1t_A 317 GHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFI 396 (472)
T ss_dssp HHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 6777777754 35677889999999999999999999999999843333221 2222222 3457899999999999
Q ss_pred HhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 047992 626 SITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDV 703 (868)
Q Consensus 626 ~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~ 703 (868)
...+ +.|+.....- .++.+.+++++. ...| ++.+|..|...+...|+++.|...++++++++|.+|
T Consensus 397 kal~---i~~~~~~~~~---------~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p 464 (472)
T 4g1t_A 397 EGVK---INQKSREKEK---------MKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIP 464 (472)
T ss_dssp HHHH---SCCCCHHHHH---------HHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------
T ss_pred HHHh---cCcccHHHHH---------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Confidence 8776 5565433222 223344444433 2233 455899999999999999999999999999999998
Q ss_pred hhHHHHH
Q 047992 704 LIQRLIL 710 (868)
Q Consensus 704 ~~~~~l~ 710 (868)
.++.-++
T Consensus 465 ~a~~~~G 471 (472)
T 4g1t_A 465 SASSWNG 471 (472)
T ss_dssp -------
T ss_pred cHhhcCC
Confidence 8776554
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=7.8e-16 Score=175.73 Aligned_cols=132 Identities=11% Similarity=0.081 Sum_probs=117.9
Q ss_pred ccChhhHHHHHHHHHhcCChHHHHHHHHHHH---hcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcccH
Q 047992 255 KLGVVTFNILIRSYNQLGQCDVAMEMVKRME---SLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTI 331 (868)
Q Consensus 255 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~ 331 (868)
..-..|||+||++|++.|++++|.++|++|. ..|+.||++|||+||.+|++.|++++|.++|++|...|+.||.+||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 3345799999999999999999999998876 4589999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhchhh-HHHHHHHHHHHHHhCCCCCccHHHHHHHHHHcCCCHHHHHHHH
Q 047992 332 TSAISACTDLKA-LAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEELEAAERVF 386 (868)
Q Consensus 332 ~~ll~a~~~~~~-~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~vf 386 (868)
+++|.++++.|. .+.|.+++.+|.+.|+.||..+|+.+++.+.+.+-++...+++
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~ 259 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVK 259 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhC
Confidence 999999999997 5789999999999999999999999987766655554444443
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.57 E-value=8.5e-14 Score=147.79 Aligned_cols=263 Identities=16% Similarity=0.116 Sum_probs=129.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCeeehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHH
Q 047992 396 SWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGY 475 (868)
Q Consensus 396 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~ 475 (868)
.|..+...+...|++++|+.+|+++.+.. +.+..++..+...|.+.|++++|...|+++.+.. +.+..+|..+...|
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAVSH 99 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cCCHHHHHHHHHHH
Confidence 34444555555555555555555555432 2234445555555566666666666666554432 33445555566666
Q ss_pred HhcCChhHHHHHHHHhhcCCCCCCHHhHHHHH--------------HH--HhchhchHHHHHHHHHHHHhCCCCChhHHH
Q 047992 476 QQLGQKNNALGVFRKMQSSCFYPNCVTILSVL--------------PA--CAYLVASNKVKEIHGCVLRRSLESSLPVMN 539 (868)
Q Consensus 476 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll--------------~a--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 539 (868)
...|++++|+..++++... .|+.......+ .. +...|+.+.+...+..+++.. +.+..++.
T Consensus 100 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 176 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLS--QPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHA 176 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHT--STTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh--CCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHH
Confidence 6666666666666665532 22222111111 21 344445555555555544421 11344444
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCC
Q 047992 540 SLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGM 616 (868)
Q Consensus 540 ~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 616 (868)
.+...|.+.|++++|.+.|+++. +.+...|..+...|...|++++|++.|+++.+ ..|+
T Consensus 177 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~---------------- 238 (327)
T 3cv0_A 177 SLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALD--INPG---------------- 238 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTT----------------
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCC----------------
Confidence 55555555555555555554332 22334444444444445555555555544444 2222
Q ss_pred hHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCC-------------CHHHHHHHHHHHHhc
Q 047992 617 VDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-------------DSSIWEALLTACRIH 682 (868)
Q Consensus 617 ~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-------------~~~~w~~ll~a~~~~ 682 (868)
+...+..+..++.+.|++++|.+.++++ ...| +..+|..+..++...
T Consensus 239 -------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 299 (327)
T 3cv0_A 239 -------------------YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVM 299 (327)
T ss_dssp -------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHT
T ss_pred -------------------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhc
Confidence 2334444555555555555555555544 1122 244666666666677
Q ss_pred CCHHHHHHHHHHHhccCCC
Q 047992 683 GNIDLAVLAIERLFDLEPG 701 (868)
Q Consensus 683 ~~~~~a~~~~~~~~~l~p~ 701 (868)
|+.+.|...++++++..|+
T Consensus 300 g~~~~A~~~~~~~l~~~~~ 318 (327)
T 3cv0_A 300 NRPDLVELTYAQNVEPFAK 318 (327)
T ss_dssp TCHHHHHHHTTCCSHHHHH
T ss_pred CCHHHHHHHHHHHHHhcch
Confidence 7777777766666655443
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.2e-13 Score=137.04 Aligned_cols=191 Identities=16% Similarity=0.132 Sum_probs=157.2
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHH
Q 047992 532 ESSLPVMNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR-GTFLSI 607 (868)
Q Consensus 532 ~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~l 607 (868)
+++...+..+...|.+.|++++|...|++.. +.+...|..+...+.+.|++++|+..|++..+ ..|+. ..+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVA--RTPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHH
Confidence 3466778889999999999999999999754 45778899999999999999999999999998 67765 677788
Q ss_pred HHHhhcc-----------CChHHHHHHHHHhhhhcCCCCC-hhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCCHHHHHH
Q 047992 608 ILAHSLA-----------GMVDLGKKVFCSITECYQIIPM-IEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPDSSIWEA 674 (868)
Q Consensus 608 l~a~~~~-----------g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~~~~w~~ 674 (868)
..++... |+.++|+..|+...+. .|+ ...+..+..+|...|++++|++.+++. ....++.+|..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHH
Confidence 8888888 9999999999998873 443 567888999999999999999999987 22277889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHH
Q 047992 675 LLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRK 727 (868)
Q Consensus 675 ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 727 (868)
+..++...|+++.|...++++++++|+++..+..++.+|...|++++|.+..+
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~ 209 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAA 209 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988765
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.52 E-value=4.4e-13 Score=139.46 Aligned_cols=220 Identities=11% Similarity=0.099 Sum_probs=139.5
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCee-ehhhHHHHHHhcCCH
Q 047992 367 NSLINMYSKCEELEAAERVFDMIKDKDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVI-TWNVLISGYIQNGNE 445 (868)
Q Consensus 367 ~~li~~y~~~g~~~~A~~vf~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~li~~~~~~g~~ 445 (868)
..+..+|...|+++.|...++....++..++..+...+...++.++|++.++++...+..|+.. .+..+...|.+.|++
T Consensus 38 ~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~ 117 (291)
T 3mkr_A 38 VFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNP 117 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCH
Confidence 3456678888888888877766544556677777888888888888999988888776556543 445566788889999
Q ss_pred HHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHH
Q 047992 446 DEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGC 525 (868)
Q Consensus 446 ~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~ 525 (868)
++|++.|++ +.+...+..++..|.+.|++++|...|+++... .|+... ..+
T Consensus 118 ~~Al~~l~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~-~~l------------------- 168 (291)
T 3mkr_A 118 DAALRTLHQ-------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--DEDATL-TQL------------------- 168 (291)
T ss_dssp HHHHHHHTT-------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHH-HHH-------------------
T ss_pred HHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CcCcHH-HHH-------------------
Confidence 999998887 356778888888899999999999999888754 354321 111
Q ss_pred HHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-
Q 047992 526 VLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR- 601 (868)
Q Consensus 526 ~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~- 601 (868)
..+++.++...|++++|..+|+++. +.+...|+.+..++.+.|++++|++.|++.++ ..|+.
T Consensus 169 ------------~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~--~~p~~~ 234 (291)
T 3mkr_A 169 ------------ATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALD--KDSGHP 234 (291)
T ss_dssp ------------HHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH
T ss_pred ------------HHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCH
Confidence 1122233333455555555555442 23444555555555555555555555555555 34432
Q ss_pred HHHHHHHHHhhccCChHH-HHHHHHHhhh
Q 047992 602 GTFLSIILAHSLAGMVDL-GKKVFCSITE 629 (868)
Q Consensus 602 ~t~~~ll~a~~~~g~~~~-a~~~~~~m~~ 629 (868)
.++..+...+.+.|..++ +.++++.+.+
T Consensus 235 ~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 235 ETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 444455555555555543 3455555544
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=9.4e-14 Score=143.48 Aligned_cols=242 Identities=12% Similarity=-0.056 Sum_probs=174.7
Q ss_pred hcCCHHHHHHHHHhcccCCCC--CCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHH
Q 047992 441 QNGNEDEAVDLFQRMGKNDKV--KRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNK 518 (868)
Q Consensus 441 ~~g~~~~A~~~f~~m~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 518 (868)
..|++++|+..|+++.+.... +.+...|..+...+...|++++|+..|+++.
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al-------------------------- 70 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQAL-------------------------- 70 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--------------------------
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHH--------------------------
Confidence 345566666666655443211 1133445555555555555555555555543
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHHHHC
Q 047992 519 VKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQMKSF 595 (868)
Q Consensus 519 ~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 595 (868)
+. .+.+..++..+...|.+.|++++|.+.|++.. +.+...|..+...|...|++++|++.|+++.+
T Consensus 71 ---------~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~- 139 (275)
T 1xnf_A 71 ---------AI-RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ- 139 (275)
T ss_dssp ---------HH-CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred ---------Hc-CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH-
Confidence 32 12356677888899999999999999998764 45678899999999999999999999999998
Q ss_pred CCCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCC-----H
Q 047992 596 GLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPD-----S 669 (868)
Q Consensus 596 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~-----~ 669 (868)
..|+.......+..+...|+.++|..+|+...... .++...+ .++..+...+..++|.+.+++. ...|+ .
T Consensus 140 -~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 215 (275)
T 1xnf_A 140 -DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS--DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLS 215 (275)
T ss_dssp -HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS--CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred -hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhccccccccccc
Confidence 66777666666666778899999999998877643 3333344 4677777888889999999887 33332 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHH
Q 047992 670 SIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVR 726 (868)
Q Consensus 670 ~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 726 (868)
.+|..+...+...|+++.|...++++++++|++...+ +..+...|++++|.+-.
T Consensus 216 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 216 ETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH---HHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHHH---HHHHHHHHHHHhhHHHH
Confidence 6888999999999999999999999999999876554 66778888888876643
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.49 E-value=5.1e-13 Score=137.72 Aligned_cols=254 Identities=14% Similarity=0.038 Sum_probs=135.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCeeehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCee----ehhhhH
Q 047992 397 WNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTA----SWNSLI 472 (868)
Q Consensus 397 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~----~~~~li 472 (868)
+......+...|++++|+..|++..+.. +.+...+..+...|...|++++|...|++..+.. ++.. .|..+.
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV---NATKAKSADFEYYG 81 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS---CTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc---CchhHHHHHHHHHH
Confidence 3444455555555555555555555442 1123345555555555555555555555554421 1111 134444
Q ss_pred HHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHH
Q 047992 473 AGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIV 552 (868)
Q Consensus 473 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~ 552 (868)
..|...|++++|+..|++.. +. .+.+..++..+...|.+.|+++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~-----------------------------------~~-~~~~~~~~~~l~~~~~~~~~~~ 125 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAV-----------------------------------DR-DTTRLDMYGQIGSYFYNKGNFP 125 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHH-----------------------------------HH-STTCTHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcccHHHHHHHHHHHH-----------------------------------hc-CcccHHHHHHHHHHHHHccCHH
Confidence 44444444444444444443 21 1224556667777777777777
Q ss_pred HHHHHHhcCCC---CCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCC---hHHHHHHHH
Q 047992 553 YSRTIFDGMSS---KDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR-GTFLSIILAHSLAGM---VDLGKKVFC 625 (868)
Q Consensus 553 ~A~~~f~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~---~~~a~~~~~ 625 (868)
+|...|++... .+...|..+...+...+++++|++.|+++.+ ..|+. ..+..+..++...|. .++|...|+
T Consensus 126 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 203 (272)
T 3u4t_A 126 LAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLE--LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYE 203 (272)
T ss_dssp HHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHH
T ss_pred HHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHcCcchhhHHHHHHHH
Confidence 77777766542 3444555555233334467777777777666 44543 344444444444444 444544444
Q ss_pred HhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchh
Q 047992 626 SITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPIEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLI 705 (868)
Q Consensus 626 ~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~ 705 (868)
...+...-.|+.. -. .-..+|..+...+...|+++.|...++++++++|+|+.+
T Consensus 204 ~a~~~~~~~~~~~-~~-------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a 257 (272)
T 3u4t_A 204 KLIEVCAPGGAKY-KD-------------------------ELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKA 257 (272)
T ss_dssp HHHHHHGGGGGGG-HH-------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHhcccccc-hH-------------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHH
Confidence 4333211111110 00 002367778888889999999999999999999999999
Q ss_pred HHHHHHHHhhcCC
Q 047992 706 QRLILQIYAICGK 718 (868)
Q Consensus 706 ~~~l~~~y~~~g~ 718 (868)
+-.+..+....+.
T Consensus 258 ~~~l~~~~~~~~~ 270 (272)
T 3u4t_A 258 IDGLKMKLEHHHH 270 (272)
T ss_dssp HHHHC--------
T ss_pred HHHhhhhhccccc
Confidence 8888777655543
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.2e-12 Score=133.61 Aligned_cols=188 Identities=9% Similarity=-0.012 Sum_probs=148.9
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CC-------ceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 047992 533 SSLPVMNSLIDTYAKSGNIVYSRTIFDGMSS---KD-------IITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRG 602 (868)
Q Consensus 533 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~d-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 602 (868)
.+..++..+...|.+.|++++|...|++... .+ ...|..+...|...|++++|++.|+++.+ +.|+..
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~ 113 (258)
T 3uq3_A 36 KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLT--EHRTAD 113 (258)
T ss_dssp CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCHH
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHh--cCchhH
Confidence 4555667777788888888888888876542 12 46788888888889999999999998888 556643
Q ss_pred HHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHH
Q 047992 603 TFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIE-PDSSIWEALLTACR 680 (868)
Q Consensus 603 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~-p~~~~w~~ll~a~~ 680 (868)
.+...|++++|...++.+... .+.+...+..+..++.+.|++++|.+.++++ ... .+..+|..+...+.
T Consensus 114 -------~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 184 (258)
T 3uq3_A 114 -------ILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALA 184 (258)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred -------HHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Confidence 345568888999998887762 2223456788888899999999999999887 333 35678888999999
Q ss_pred hcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHHh
Q 047992 681 IHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLERE 731 (868)
Q Consensus 681 ~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 731 (868)
..|+++.|...++++++++|+++..|..++.+|...|++++|.+..+...+
T Consensus 185 ~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 185 KLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999997766543
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.2e-12 Score=133.60 Aligned_cols=237 Identities=10% Similarity=0.015 Sum_probs=179.3
Q ss_pred ehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHH
Q 047992 431 TWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPAC 510 (868)
Q Consensus 431 t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 510 (868)
.|..+...|...|++++|...|++..+.. .+...|..+...|...|++++|+..+++.... .|+
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~----------- 70 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH---KDITYLNNRAAAEYEKGEYETAISTLNDAVEQ--GRE----------- 70 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHH-----------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--Ccc-----------
Confidence 45566666777777777777777766543 45566666667777777777777776665431 010
Q ss_pred hchhchHHHHHHHHHHHHhCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCceecHHHHHHHHhcCChHHHH
Q 047992 511 AYLVASNKVKEIHGCVLRRSLESS----LPVMNSLIDTYAKSGNIVYSRTIFDGMSSKDIITWNSLICGYVLHGFWHAAL 586 (868)
Q Consensus 511 ~~~~~~~~~~~i~~~~~~~~~~~~----~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~ 586 (868)
..++ ..++..+...|.+.|++++|...|++....+.. ...+...|+.++|+
T Consensus 71 --------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~ 125 (258)
T 3uq3_A 71 --------------------MRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKEL 125 (258)
T ss_dssp --------------------TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHH
T ss_pred --------------------cccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHH
Confidence 1111 456778888999999999999999876532211 34577788999999
Q ss_pred HHHHHHHHCCCCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-C
Q 047992 587 DLFDQMKSFGLKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-P 664 (868)
Q Consensus 587 ~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~ 664 (868)
+.++++.. ..|+. ..+..+...+...|+.++|..+|+...+... .+...|..+..++.+.|++++|.+.++++ .
T Consensus 126 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 201 (258)
T 3uq3_A 126 KKAEAEAY--VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP--EDARGYSNRAAALAKLMSFPEAIADCNKAIE 201 (258)
T ss_dssp HHHHHHHH--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHH--cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc--ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999988 56655 6677788888999999999999999887432 34677889999999999999999999987 3
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccC------CCCchhHHHHHHH
Q 047992 665 IEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLE------PGDVLIQRLILQI 712 (868)
Q Consensus 665 ~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~------p~~~~~~~~l~~~ 712 (868)
..| +..+|..+..++...|+.+.|...++++++++ |++...+..|+.+
T Consensus 202 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 202 KDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred hCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 344 46689999999999999999999999999999 8888777777654
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.42 E-value=3.9e-12 Score=129.38 Aligned_cols=196 Identities=8% Similarity=-0.073 Sum_probs=159.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 047992 535 LPVMNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKP-NRGTFLSIILA 610 (868)
Q Consensus 535 ~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a 610 (868)
...+..+...|...|++++|.+.|+++. +.+...|..+...|...|++++|++.|+++.+. .| +...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALAS--DSRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHH
Confidence 4567778888888899888888888754 456678888888888999999999999988873 45 45677777788
Q ss_pred hhccCChHHHHHHHHHhhhhcCCCC-ChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 047992 611 HSLAGMVDLGKKVFCSITECYQIIP-MIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDL 687 (868)
Q Consensus 611 ~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~ 687 (868)
+...|++++|..+|+.+.+ .+..| +...+..+..++.+.|++++|.+.++++ ...| +..+|..+...+...|+++.
T Consensus 115 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHH
Confidence 8889999999999988876 33445 3556778888888999999999998886 3333 46688888888889999999
Q ss_pred HHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHHhcC
Q 047992 688 AVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLERENT 733 (868)
Q Consensus 688 a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 733 (868)
|...++++++..|++...+..++.+|...|++++|.+..+.+.+..
T Consensus 194 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 194 ARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999999999999888776543
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.42 E-value=6.5e-12 Score=124.96 Aligned_cols=196 Identities=12% Similarity=0.029 Sum_probs=161.2
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 047992 534 SLPVMNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKP-NRGTFLSIIL 609 (868)
Q Consensus 534 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~ 609 (868)
++.++..++..|...|++++|.+.|+++. +.+...|..+...|...|++++|++.|+++.+ ..| +..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALS--IKPDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCChHHHHHHHH
Confidence 55667788888899999999999888654 45677888888889999999999999999887 345 4567777888
Q ss_pred Hhhcc-CChHHHHHHHHHhhhhcCCCCC-hhHHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH
Q 047992 610 AHSLA-GMVDLGKKVFCSITECYQIIPM-IEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNI 685 (868)
Q Consensus 610 a~~~~-g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~ 685 (868)
.+... |++++|..+|+.+.+ .+..|+ ...+..+..++.+.|++++|.+.++++ ...| +...|..+...+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCH
Confidence 88888 999999999998887 334444 567788888899999999999998887 3334 466888888888999999
Q ss_pred HHHHHHHHHHhccCC-CCchhHHHHHHHHhhcCCChhHHHHHHHHHhc
Q 047992 686 DLAVLAIERLFDLEP-GDVLIQRLILQIYAICGKPEDALKVRKLEREN 732 (868)
Q Consensus 686 ~~a~~~~~~~~~l~p-~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 732 (868)
+.|...++++++++| +++..+..++.+|...|+++++....+.+.+.
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 999999999999999 88999999999999999999999888877654
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.41 E-value=1.5e-12 Score=140.10 Aligned_cols=178 Identities=11% Similarity=0.068 Sum_probs=130.3
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHH
Q 047992 534 SLPVMNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR-GTFLSIIL 609 (868)
Q Consensus 534 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~ 609 (868)
+..+++.+..+|.+.|++++|...|+++. +.+...|+.+..++...|++++|++.|+++++ +.|+. ..|..+..
T Consensus 165 ~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~--l~P~~~~a~~~lg~ 242 (382)
T 2h6f_A 165 NYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYF 242 (382)
T ss_dssp CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 44455666666666666666666666543 45667788888888888888888888888887 56644 66777777
Q ss_pred Hhhc-cCChHHH-----HHHHHHhhhhcCCCCC-hhHHHHHHHhhhhcC--ChHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 047992 610 AHSL-AGMVDLG-----KKVFCSITECYQIIPM-IEHYSAMIDLYGRSG--KLEEAMEFIEDMPIEPD-SSIWEALLTAC 679 (868)
Q Consensus 610 a~~~-~g~~~~a-----~~~~~~m~~~~~~~p~-~~~y~~lvd~l~r~g--~~~eA~~~i~~~~~~p~-~~~w~~ll~a~ 679 (868)
++.. .|..++| +.+|+...+ +.|+ ...|..+..+|...| ++++|+++++++...|+ ..++..|...+
T Consensus 243 ~l~~l~~~~~eA~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~ 319 (382)
T 2h6f_A 243 VISNTTGYNDRAVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIY 319 (382)
T ss_dssp HHHHTTCSCSHHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred HHHHhcCcchHHHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 7777 5665777 477777665 3443 456777778888888 68999999988755565 45778888888
Q ss_pred HhcC--------C-HHHHHHHHHHH-hccCCCCchhHHHHHHHHhhc
Q 047992 680 RIHG--------N-IDLAVLAIERL-FDLEPGDVLIQRLILQIYAIC 716 (868)
Q Consensus 680 ~~~~--------~-~~~a~~~~~~~-~~l~p~~~~~~~~l~~~y~~~ 716 (868)
...| + ++.|..+++++ .+++|.....|..++..+...
T Consensus 320 ~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 320 EDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 7763 3 59999999999 999999999999988776543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.41 E-value=1.3e-11 Score=125.63 Aligned_cols=207 Identities=15% Similarity=0.049 Sum_probs=163.6
Q ss_pred eeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 047992 465 TASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDT 544 (868)
Q Consensus 465 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~ 544 (868)
...|..+...+...|++++|+..|+++... .+.+..++..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------------------------------------~~~~~~~~~~la~~ 80 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEI------------------------------------DPSSADAHAALAVV 80 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHH------------------------------------CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhc------------------------------------CCChHHHHHHHHHH
Confidence 344556666777777777777777776532 12245567778888
Q ss_pred HHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCChHHH
Q 047992 545 YAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR-GTFLSIILAHSLAGMVDLG 620 (868)
Q Consensus 545 y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a 620 (868)
|.+.|++++|.+.|+++. +.+...|..+...|...|++++|++.|+++.+.+..|+. ..+..+..++...|++++|
T Consensus 81 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 160 (252)
T 2ho1_A 81 FQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQA 160 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHH
Confidence 888999999999888654 446678888889999999999999999999875456754 6677778888999999999
Q ss_pred HHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc
Q 047992 621 KKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDL 698 (868)
Q Consensus 621 ~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l 698 (868)
..+|+.+.+.. ..+...+..++.++.+.|++++|.+.++++ ...| +...|..+...+...|+.+.|...+++++++
T Consensus 161 ~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 161 KEYFEKSLRLN--RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 99999887743 234677889999999999999999999987 3344 5568888888899999999999999999999
Q ss_pred CCCCchhHHHH
Q 047992 699 EPGDVLIQRLI 709 (868)
Q Consensus 699 ~p~~~~~~~~l 709 (868)
.|+++.....+
T Consensus 239 ~p~~~~~~~~l 249 (252)
T 2ho1_A 239 YPGSLEYQEFQ 249 (252)
T ss_dssp CTTSHHHHHHH
T ss_pred CCCCHHHHHHH
Confidence 99988766544
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.40 E-value=2.6e-12 Score=129.76 Aligned_cols=214 Identities=12% Similarity=0.078 Sum_probs=127.3
Q ss_pred CeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 047992 464 NTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLID 543 (868)
Q Consensus 464 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~ 543 (868)
....|..+...+...|++++|...|+++... .| .+..++..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~~----------------------------------~~~~~~~~la~ 65 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE--NK----------------------------------EDAIPYINFAN 65 (243)
T ss_dssp --------------------CCTTHHHHHTT--CT----------------------------------TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--Cc----------------------------------ccHHHHHHHHH
Confidence 3445555666666667777777666666532 11 23444555666
Q ss_pred HHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCChHH
Q 047992 544 TYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKP-NRGTFLSIILAHSLAGMVDL 619 (868)
Q Consensus 544 ~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~ 619 (868)
.|.+.|++++|...|++.. +.+...|..+...|...|++++|++.|+++.+. .| +...+..+...+...|+.++
T Consensus 66 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~ 143 (243)
T 2q7f_A 66 LLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKL 143 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHH
Confidence 6667777777777776543 345566777777777777777777777777763 33 34556666667777777777
Q ss_pred HHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 047992 620 GKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIE-PDSSIWEALLTACRIHGNIDLAVLAIERLFD 697 (868)
Q Consensus 620 a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~-p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~ 697 (868)
|..+|+.+.+.. ..+...+..+..++.+.|++++|.+.++++ ... .+..+|..+...+...|+.+.|...++++++
T Consensus 144 A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 144 ALPYLQRAVELN--ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 777777766532 224556677777777788888887777766 222 3455777777778888888888888888888
Q ss_pred cCCCCchhHHHHHHHHhhcC
Q 047992 698 LEPGDVLIQRLILQIYAICG 717 (868)
Q Consensus 698 l~p~~~~~~~~l~~~y~~~g 717 (868)
++|+++.++..++.+....|
T Consensus 222 ~~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 222 IQPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp HCTTCHHHHHHHTC------
T ss_pred cCcchHHHHHHHHHHHhhcc
Confidence 88888777777766654433
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.40 E-value=8.2e-12 Score=124.24 Aligned_cols=209 Identities=11% Similarity=-0.045 Sum_probs=161.7
Q ss_pred CeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 047992 464 NTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLID 543 (868)
Q Consensus 464 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~ 543 (868)
+...|..+...+...|++++|+..|+++... .+.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------------------------------------~~~~~~~~~~l~~ 50 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKS------------------------------------DPKNELAWLVRAE 50 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------------------CTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh------------------------------------CccchHHHHHHHH
Confidence 3445566666666677777777766665432 1223456677788
Q ss_pred HHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhc-CChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCChH
Q 047992 544 TYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLH-GFWHAALDLFDQMKSFGLKPNR-GTFLSIILAHSLAGMVD 618 (868)
Q Consensus 544 ~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~ 618 (868)
.|...|++++|.+.|++.. +.+...|..+...|... |++++|++.|+++.+.+..|+. ..+..+..++...|+++
T Consensus 51 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 130 (225)
T 2vq2_A 51 IYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFG 130 (225)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHH
Confidence 8888888888888888654 45667888889999999 9999999999999884445654 66777888889999999
Q ss_pred HHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047992 619 LGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIE--PDSSIWEALLTACRIHGNIDLAVLAIERL 695 (868)
Q Consensus 619 ~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~--p~~~~w~~ll~a~~~~~~~~~a~~~~~~~ 695 (868)
+|..+|+.+.+.. +.+...+..+..++.+.|++++|.+.++++ ... .+...|..+...+...|+.+.+...++.+
T Consensus 131 ~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 131 LAEAYLKRSLAAQ--PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL 208 (225)
T ss_dssp HHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 9999999887742 223667888999999999999999999987 333 35667777777778999999999999999
Q ss_pred hccCCCCchhHHHHH
Q 047992 696 FDLEPGDVLIQRLIL 710 (868)
Q Consensus 696 ~~l~p~~~~~~~~l~ 710 (868)
.+.+|+++.....+.
T Consensus 209 ~~~~p~~~~~~~~l~ 223 (225)
T 2vq2_A 209 QANFPYSEELQTVLT 223 (225)
T ss_dssp HHHCTTCHHHHHHHC
T ss_pred HHhCCCCHHHHHHhc
Confidence 999999988877664
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.37 E-value=4.3e-12 Score=128.13 Aligned_cols=196 Identities=11% Similarity=0.063 Sum_probs=153.3
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 047992 533 SSLPVMNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKP-NRGTFLSII 608 (868)
Q Consensus 533 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll 608 (868)
.....+..+...|.+.|++++|...|+++. +.+...|..+...|...|++++|++.|+++.+. .| +...+..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALEL--DSSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCcchHHHHHHH
Confidence 345667788889999999999999999764 456778999999999999999999999999984 45 457788888
Q ss_pred HHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHH
Q 047992 609 LAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIE-PDSSIWEALLTACRIHGNID 686 (868)
Q Consensus 609 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~-p~~~~w~~ll~a~~~~~~~~ 686 (868)
..+...|+.++|..+|+.+.+.. ..+...+..+..++.+.|++++|.+.++++ ... .+..+|..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHH
Confidence 89999999999999999988743 235667888999999999999999999987 333 45678999999999999999
Q ss_pred HHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHHhc
Q 047992 687 LAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLEREN 732 (868)
Q Consensus 687 ~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 732 (868)
.|...++++++.+|+++..+..++.+|...|++++|.+..+...+.
T Consensus 177 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 177 EALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999988877554
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.36 E-value=4.4e-11 Score=123.08 Aligned_cols=227 Identities=11% Similarity=0.041 Sum_probs=174.4
Q ss_pred cHHHHHHHHHHcCCCHHHHHHHHHhcCC---CCeehHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCe--eehhhHHHH
Q 047992 364 LVGNSLINMYSKCEELEAAERVFDMIKD---KDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNV--ITWNVLISG 438 (868)
Q Consensus 364 ~~~~~li~~y~~~g~~~~A~~vf~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~li~~ 438 (868)
.........|.+.|++++|...|+...+ .+...|..+...|...|++++|++.|++..+.+..|+. .+|..+...
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 3455677889999999999999998754 35668999999999999999999999999984422222 127888999
Q ss_pred HHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHH
Q 047992 439 YIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNK 518 (868)
Q Consensus 439 ~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 518 (868)
|...|++++|...|++..+.. +.+...|..+...|...|++++|+..|++.... .|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~-------------------- 139 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD--TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TT-------------------- 139 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SC--------------------
T ss_pred HHHcccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CC--------------------
Confidence 999999999999999998764 556678999999999999999999999988753 22
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHH-HHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCC---hHHHHHHHHH
Q 047992 519 VKEIHGCVLRRSLESSLPVMNSLI-DTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGF---WHAALDLFDQ 591 (868)
Q Consensus 519 ~~~i~~~~~~~~~~~~~~~~~~Li-~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~---~~~A~~l~~~ 591 (868)
.+..++..+. ..|.+ +++++|.+.|++.. +.+...|..+...+...|+ .++|+..|++
T Consensus 140 --------------~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 204 (272)
T 3u4t_A 140 --------------TDPKVFYELGQAYYYN-KEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEK 204 (272)
T ss_dssp --------------CCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHH
T ss_pred --------------CcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHH
Confidence 3566788888 55554 59999999999765 4456788888888888888 8889999999
Q ss_pred HHHCC-CCCCH------HHHHHHHHHhhccCChHHHHHHHHHhhh
Q 047992 592 MKSFG-LKPNR------GTFLSIILAHSLAGMVDLGKKVFCSITE 629 (868)
Q Consensus 592 m~~~g-~~p~~------~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 629 (868)
..+.. -.|+. ..+..+...+...|+.++|..+|+...+
T Consensus 205 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 249 (272)
T 3u4t_A 205 LIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILA 249 (272)
T ss_dssp HHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 88731 12432 2344445555556666666666665554
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.34 E-value=4.5e-11 Score=132.82 Aligned_cols=370 Identities=11% Similarity=0.016 Sum_probs=184.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCccChhhHHHHHHHHHhcCCh---HHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhc
Q 047992 230 ISGYFQIGENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQLGQC---DVAMEMVKRMESLGITPDVFTWTCMISGFAQN 306 (868)
Q Consensus 230 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 306 (868)
...+.+.|++++|+++|++..+.| +...+..|...|...|+. ++|.+.|++..+. +...+..+...+...
T Consensus 10 a~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~ 82 (452)
T 3e4b_A 10 ANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAK 82 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHTC
T ss_pred HHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhC
Confidence 334455566666666666665544 223333444444455555 5666666665543 444555555544444
Q ss_pred C-----ChhHHHHHHHHHHhCCccCCcccHHHHHHHHhchhhH---HHHHHHHHHHHHhCCCCCccHHHHHHHHHHcCC-
Q 047992 307 G-----RTSQALDLFKEMSFVGVMPNGVTITSAISACTDLKAL---AMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCE- 377 (868)
Q Consensus 307 g-----~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~---~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g- 377 (868)
+ ++++|+..|++....|.. ..+..+...+...+.. ..+.+.+......| +......|..+|...+
T Consensus 83 ~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~ 156 (452)
T 3e4b_A 83 PGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGT 156 (452)
T ss_dssp --CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTC
T ss_pred CCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCC
Confidence 3 556666666666554321 1333344343332222 12333333333333 3445556666666665
Q ss_pred ---CHHHHHHHHHhcCCCCeehHHHHHHHHHhcC---ChhHHHHHHHHhHhCCCCCCeeehhhHHHHHHhc----CCHHH
Q 047992 378 ---ELEAAERVFDMIKDKDVYSWNSMIAGYCQAG---YCGKAYELFIKMQESDVPPNVITWNVLISGYIQN----GNEDE 447 (868)
Q Consensus 378 ---~~~~A~~vf~~~~~~~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~----g~~~~ 447 (868)
..+.+..+++.....++.++..+...|...| +.++|++.|++..+.| .++...+..|..+|... +++++
T Consensus 157 ~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~ 235 (452)
T 3e4b_A 157 YDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKT 235 (452)
T ss_dssp GGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHH
T ss_pred cccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHH
Confidence 4555666666666666667777777777777 7777777777777776 33333335555666443 57777
Q ss_pred HHHHHHhcccCCCCCCCeeehhhhHHH-H--HhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHH
Q 047992 448 AVDLFQRMGKNDKVKRNTASWNSLIAG-Y--QQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHG 524 (868)
Q Consensus 448 A~~~f~~m~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~ 524 (868)
|..+|++.. +.+...+..|... | ...+++++|+..|++..+.|
T Consensus 236 A~~~~~~aa-----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g----------------------------- 281 (452)
T 3e4b_A 236 AQALLEKIA-----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD----------------------------- 281 (452)
T ss_dssp HHHHHHHHG-----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT-----------------------------
T ss_pred HHHHHHHHc-----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC-----------------------------
Confidence 777777764 2344455555554 3 34566666666666554433
Q ss_pred HHHHhCCCCChhHHHHHHHHHHhcC-----CHHHHHHHHhcCCCCCceecHHHHHHHHh----cCChHHHHHHHHHHHHC
Q 047992 525 CVLRRSLESSLPVMNSLIDTYAKSG-----NIVYSRTIFDGMSSKDIITWNSLICGYVL----HGFWHAALDLFDQMKSF 595 (868)
Q Consensus 525 ~~~~~~~~~~~~~~~~Li~~y~k~g-----~~~~A~~~f~~~~~~d~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~ 595 (868)
++.....|..+|. .| +.++|.+.|++..+.++.++..+...|.. ..+.++|+..|++..+.
T Consensus 282 ---------~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 351 (452)
T 3e4b_A 282 ---------QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAVGREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN 351 (452)
T ss_dssp ---------CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTTTTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT
T ss_pred ---------CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh
Confidence 3444455555665 34 67777777776554455566666555554 23667777777777665
Q ss_pred CCCCCHHHHHHHHHHhhc----cCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHh
Q 047992 596 GLKPNRGTFLSIILAHSL----AGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIED 662 (868)
Q Consensus 596 g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~ 662 (868)
|. |+.. ..+...+.. ..+.++|..+|+...+ .|.......... +......+.+++|..+.++
T Consensus 352 g~-~~A~--~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~-~g~~~a~~~l~~-l~~~~~~~~~~~a~~~~~~ 417 (452)
T 3e4b_A 352 GQ-NSAD--FAIAQLFSQGKGTKPDPLNAYVFSQLAKA-QDTPEANDLATQ-LEAPLTPAQRAEGQRLVQQ 417 (452)
T ss_dssp TC-TTHH--HHHHHHHHSCTTBCCCHHHHHHHHHHHHT-TCCHHHHHHHHH-HHTTCCHHHHHHHHHHHHH
T ss_pred Ch-HHHH--HHHHHHHHhCCCCCCCHHHHHHHHHHHHH-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHH
Confidence 43 3332 222223322 3466777777776654 232222212221 2222234456666666554
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.1e-11 Score=122.77 Aligned_cols=195 Identities=16% Similarity=0.047 Sum_probs=104.7
Q ss_pred CCCeeehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHH
Q 047992 426 PPNVITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILS 505 (868)
Q Consensus 426 ~p~~~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 505 (868)
+++...+..+...+.+.|++++|...|++..+.. |.+...|..+...+.+.|++++|+..|++..+. .|+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~------ 71 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN--PQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPR------ 71 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT------
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC------
Confidence 3455556666666666777777777777665543 445566666666666666666666666665532 232
Q ss_pred HHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc-----------CCHHHHHHHHhcCC---CCCceecHH
Q 047992 506 VLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKS-----------GNIVYSRTIFDGMS---SKDIITWNS 571 (868)
Q Consensus 506 ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~-----------g~~~~A~~~f~~~~---~~d~~~~~~ 571 (868)
+...+..+...|.+. |++++|...|++.. +.+...|..
T Consensus 72 ----------------------------~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~ 123 (217)
T 2pl2_A 72 ----------------------------YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQ 123 (217)
T ss_dssp ----------------------------CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred ----------------------------cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 333444444445444 66666666665442 334555666
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcC
Q 047992 572 LICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSG 651 (868)
Q Consensus 572 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g 651 (868)
+...|...|++++|++.|++.++.. .+...+..+..++...|++++|+..|+...+.. +.+...+..+..++.+.|
T Consensus 124 lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~la~~~~~~g 199 (217)
T 2pl2_A 124 RGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA--PKDLDLRVRYASALLLKG 199 (217)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTC--
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcc
Confidence 6666666666666666666666644 445555556666666666666666666655521 112344555566666666
Q ss_pred ChHHHHHHHHh
Q 047992 652 KLEEAMEFIED 662 (868)
Q Consensus 652 ~~~eA~~~i~~ 662 (868)
++++|.+.+++
T Consensus 200 ~~~~A~~~~~~ 210 (217)
T 2pl2_A 200 KAEEAARAAAL 210 (217)
T ss_dssp -----------
T ss_pred CHHHHHHHHHH
Confidence 66666666554
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.33 E-value=5.1e-11 Score=132.36 Aligned_cols=342 Identities=13% Similarity=-0.000 Sum_probs=178.3
Q ss_pred HHHHHHcCCCHHHHHHHHHhcCC-CCeehHHHHHHHHHhcCCh---hHHHHHHHHhHhCCCCCCeeehhhHHHHHHhcC-
Q 047992 369 LINMYSKCEELEAAERVFDMIKD-KDVYSWNSMIAGYCQAGYC---GKAYELFIKMQESDVPPNVITWNVLISGYIQNG- 443 (868)
Q Consensus 369 li~~y~~~g~~~~A~~vf~~~~~-~~~~~~~~li~~~~~~g~~---~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g- 443 (868)
+...+.+.|++++|.+.|+...+ .+..++..+...|...|+. ++|+..|++..+. +...+..|...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC--------------------------------CHHHHHHHHHTC--
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCC
Confidence 55566677788888887776654 3455566666666666766 7777777777643 4455555655444443
Q ss_pred ----CHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChh---HHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhch
Q 047992 444 ----NEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKN---NALGVFRKMQSSCFYPNCVTILSVLPACAYLVAS 516 (868)
Q Consensus 444 ----~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 516 (868)
++++|...|++..+.+ +...+..|...|...+..+ ++.+.+......|.. .....+-..+...+.+
T Consensus 85 ~~~~~~~~A~~~~~~Aa~~g----~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAFANG----EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYP---EAGLAQVLLYRTQGTY 157 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHTT----CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCT---THHHHHHHHHHHHTCG
T ss_pred CCCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCH---HHHHHHHHHHHcCCCc
Confidence 6677777777776543 3336666766666655433 344444444433331 1222222333333333
Q ss_pred HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC---CHHHHHHHHhcCCC---CCceecHHHHHHHHhc----CChHHHH
Q 047992 517 NKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSG---NIVYSRTIFDGMSS---KDIITWNSLICGYVLH----GFWHAAL 586 (868)
Q Consensus 517 ~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g---~~~~A~~~f~~~~~---~d~~~~~~li~~~~~~----g~~~~A~ 586 (868)
+........+.+.-...++..+..|..+|.+.| +.++|.+.|++... ++...+..+...|... ++.++|+
T Consensus 158 ~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~ 237 (452)
T 3e4b_A 158 DQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQ 237 (452)
T ss_dssp GGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 333222222223223334446777777777777 77777777775542 2223335555555433 5677777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHH-h--hccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcC-----ChHHHHH
Q 047992 587 DLFDQMKSFGLKPNRGTFLSIILA-H--SLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSG-----KLEEAME 658 (868)
Q Consensus 587 ~l~~~m~~~g~~p~~~t~~~ll~a-~--~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g-----~~~eA~~ 658 (868)
+.|++.. .| +...+..+... + ...|+.++|..+|+...+. | +...+..+..+|. .| ++++|.+
T Consensus 238 ~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~ 308 (452)
T 3e4b_A 238 ALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEA 308 (452)
T ss_dssp HHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHH
T ss_pred HHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHH
Confidence 7777765 21 22333333333 2 3467777777777776542 2 4445555555555 44 7777777
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhh----cCCChhHHHHHHHHH
Q 047992 659 FIEDMPIEPDSSIWEALLTACRI----HGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAI----CGKPEDALKVRKLER 730 (868)
Q Consensus 659 ~i~~~~~~p~~~~w~~ll~a~~~----~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~----~g~~~~a~~~~~~m~ 730 (868)
++++.- ..++..+..|...+.. .+|.+.|...++++.+ +.++.++..|+.+|.. ..+.++|....+.-.
T Consensus 309 ~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~ 385 (452)
T 3e4b_A 309 HFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAK 385 (452)
T ss_dssp HHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHH
T ss_pred HHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 777776 4455565555554443 2377777777777766 3456677777777764 345666666666555
Q ss_pred hcC
Q 047992 731 ENT 733 (868)
Q Consensus 731 ~~~ 733 (868)
+.|
T Consensus 386 ~~g 388 (452)
T 3e4b_A 386 AQD 388 (452)
T ss_dssp TTC
T ss_pred HCC
Confidence 444
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.33 E-value=8.1e-12 Score=134.43 Aligned_cols=190 Identities=9% Similarity=0.041 Sum_probs=161.6
Q ss_pred ChhHHHHHHHHHHhcCC-HHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHH
Q 047992 534 SLPVMNSLIDTYAKSGN-IVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR-GTFLSII 608 (868)
Q Consensus 534 ~~~~~~~Li~~y~k~g~-~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll 608 (868)
+..+++.+...|.+.|+ +++|...|++.. +++...|+.+...|...|++++|+..|+++++ +.|+. ..|..+.
T Consensus 130 ~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~--ldP~~~~a~~~lg 207 (382)
T 2h6f_A 130 NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILN--QDAKNYHAWQHRQ 207 (382)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCccCHHHHHHHH
Confidence 56778888999999996 999999999765 56788999999999999999999999999999 67755 7888888
Q ss_pred HHhhccCChHHHHHHHHHhhhhcCCCC-ChhHHHHHHHhhhh-cCChHHH-----HHHHHhC-CCCCC-HHHHHHHHHHH
Q 047992 609 LAHSLAGMVDLGKKVFCSITECYQIIP-MIEHYSAMIDLYGR-SGKLEEA-----MEFIEDM-PIEPD-SSIWEALLTAC 679 (868)
Q Consensus 609 ~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lvd~l~r-~g~~~eA-----~~~i~~~-~~~p~-~~~w~~ll~a~ 679 (868)
.++.+.|++++|+.+|+.+.+. .| +...|..+..+|.+ .|..++| ++.+++. ...|+ ..+|..+...+
T Consensus 208 ~~~~~~g~~~eAl~~~~~al~l---~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll 284 (382)
T 2h6f_A 208 WVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGIL 284 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 9999999999999999999873 34 45678888888988 6776888 4777766 44554 56999999988
Q ss_pred HhcC--CHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcC---------CChhHHHHHHHH
Q 047992 680 RIHG--NIDLAVLAIERLFDLEPGDVLIQRLILQIYAICG---------KPEDALKVRKLE 729 (868)
Q Consensus 680 ~~~~--~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g---------~~~~a~~~~~~m 729 (868)
...| +++.|...++++ +.+|+++.++..|+.+|...| ..++|.++.+.+
T Consensus 285 ~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 285 QDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEIL 344 (382)
T ss_dssp TTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 8877 689999999998 999999999999999999985 247888887766
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.32 E-value=1.4e-09 Score=124.82 Aligned_cols=218 Identities=10% Similarity=-0.004 Sum_probs=159.7
Q ss_pred HHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHH-HHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcC
Q 047992 483 NALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVK-EIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGM 561 (868)
Q Consensus 483 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~ 561 (868)
.+..+|++.... ..-+...|.....-+...++.+.+. +++...++. .+.+..++-.++..+.+.|+++.|+++|+++
T Consensus 327 Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~ 404 (679)
T 4e6h_A 327 RMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSC 404 (679)
T ss_dssp HHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 345566665542 2224555555555566667777775 888888763 4456777888899999999999999999876
Q ss_pred CC-------------CC------------ceecHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHhhc-c
Q 047992 562 SS-------------KD------------IITWNSLICGYVLHGFWHAALDLFDQMKSF-GLKPNRGTFLSIILAHSL-A 614 (868)
Q Consensus 562 ~~-------------~d------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~~-~ 614 (868)
.. |+ ...|...+....+.|..+.|..+|.+.++. +.. ....|......-.+ .
T Consensus 405 l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~-~~~lyi~~A~lE~~~~ 483 (679)
T 4e6h_A 405 IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLV-TPDIYLENAYIEYHIS 483 (679)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGS-CTHHHHHHHHHHHTTT
T ss_pred HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHhC
Confidence 53 21 236888888888899999999999999885 211 22333322222223 4
Q ss_pred CChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCCHHHHH
Q 047992 615 GMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP----DSSIWEALLTACRIHGNIDLAV 689 (868)
Q Consensus 615 g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p----~~~~w~~ll~a~~~~~~~~~a~ 689 (868)
++++.|+++|+...+.++..| ..+...++.+...|+.+.|..+|++. ...| ...+|...+.--..+|+.+.+.
T Consensus 484 ~d~e~Ar~ife~~Lk~~p~~~--~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~ 561 (679)
T 4e6h_A 484 KDTKTACKVLELGLKYFATDG--EYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVR 561 (679)
T ss_dssp SCCHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCch--HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 569999999999998765444 34678889999999999999999987 2223 2349999999999999999999
Q ss_pred HHHHHHhccCCCCchh
Q 047992 690 LAIERLFDLEPGDVLI 705 (868)
Q Consensus 690 ~~~~~~~~l~p~~~~~ 705 (868)
.+.+++.+..|+++..
T Consensus 562 ~v~~R~~~~~P~~~~~ 577 (679)
T 4e6h_A 562 TLEKRFFEKFPEVNKL 577 (679)
T ss_dssp HHHHHHHHHSTTCCHH
T ss_pred HHHHHHHHhCCCCcHH
Confidence 9999999999987643
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.31 E-value=3.7e-11 Score=115.52 Aligned_cols=158 Identities=15% Similarity=0.119 Sum_probs=96.0
Q ss_pred ecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHh
Q 047992 568 TWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDL 646 (868)
Q Consensus 568 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~ 646 (868)
.|..+...|...|++++|++.|++.++ +.|+. ..+..+..++.+.|+.++|...+........ .....+..+...
T Consensus 7 iy~~lG~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~ 82 (184)
T 3vtx_A 7 IYMDIGDKKRTKGDFDGAIRAYKKVLK--ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT--TSAEAYYILGSA 82 (184)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC--CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc--hhHHHHHHHHHH
Confidence 444555555555555555555555555 34433 3444455555555555555555555544211 123334455556
Q ss_pred hhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHH
Q 047992 647 YGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALK 724 (868)
Q Consensus 647 l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~ 724 (868)
+...+++++|.+.+++. ...| +..+|..+...+...|+++.|...++++++++|+++.+|..++.+|...|++++|.+
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 162 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVK 162 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHH
Confidence 66666666666666655 2233 345677777777777777777777777777777777777777777777777777777
Q ss_pred HHHHH
Q 047992 725 VRKLE 729 (868)
Q Consensus 725 ~~~~m 729 (868)
..+..
T Consensus 163 ~~~~a 167 (184)
T 3vtx_A 163 YFKKA 167 (184)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66544
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.30 E-value=7e-12 Score=140.26 Aligned_cols=190 Identities=9% Similarity=0.007 Sum_probs=168.3
Q ss_pred CChhHHHHHHHHHHhcCCH-HHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047992 533 SSLPVMNSLIDTYAKSGNI-VYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSII 608 (868)
Q Consensus 533 ~~~~~~~~Li~~y~k~g~~-~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 608 (868)
.+...+..+...|...|++ ++|.+.|++.. +.+...|..+...|...|++++|++.|++..+ +.|+...+..+.
T Consensus 100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~lg 177 (474)
T 4abn_A 100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALT--HCKNKVSLQNLS 177 (474)
T ss_dssp CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCHHHHHHHH
Confidence 4677888899999999999 99999998764 45678999999999999999999999999998 678888888888
Q ss_pred HHhhcc---------CChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhc--------CChHHHHHHHHhC-CCCC---
Q 047992 609 LAHSLA---------GMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRS--------GKLEEAMEFIEDM-PIEP--- 667 (868)
Q Consensus 609 ~a~~~~---------g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~--------g~~~eA~~~i~~~-~~~p--- 667 (868)
.++... |++++|..+|+...+.. ..+...|..+..+|.+. |++++|.+.+++. ...|
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 255 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKAS 255 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcc
Confidence 899999 99999999999988742 22366788899999888 9999999999988 4455
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHH
Q 047992 668 -DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVR 726 (868)
Q Consensus 668 -~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 726 (868)
+...|..+..++...|+++.|...++++++++|+++.++..++.+|...|++++|.+..
T Consensus 256 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 256 SNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67799999999999999999999999999999999999999999999999999998743
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=3.2e-12 Score=140.19 Aligned_cols=294 Identities=12% Similarity=0.097 Sum_probs=201.7
Q ss_pred ehHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCe-----eehhhHHHHHHhcCCHHHHHHHHHhcccC----CCCCCCe
Q 047992 395 YSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNV-----ITWNVLISGYIQNGNEDEAVDLFQRMGKN----DKVKRNT 465 (868)
Q Consensus 395 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-----~t~~~li~~~~~~g~~~~A~~~f~~m~~~----~~~~~~~ 465 (868)
..+......+...|++++|+..|++..+.+ |+. ..+..+...|...|++++|...|++.... +..+...
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 345566777888888888888888888763 332 45667777888888888888888876432 1111224
Q ss_pred eehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCC-CChhHHHHHHHH
Q 047992 466 ASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLE-SSLPVMNSLIDT 544 (868)
Q Consensus 466 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~Li~~ 544 (868)
.++..+...|...|++++|+..+++..... |. .+-. ....++..+...
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~-----------------------------~~~~~~~~~~~~~l~~~ 136 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDIS--RE-----------------------------LNDKVGEARALYNLGNV 136 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HH-----------------------------HTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--Hh-----------------------------cccccchHHHHHHHHHH
Confidence 456667777777777777777777665320 00 0000 012345566667
Q ss_pred HHhcCC--------------------HHHHHHHHhcCCC-----C----CceecHHHHHHHHhcCChHHHHHHHHHHHHC
Q 047992 545 YAKSGN--------------------IVYSRTIFDGMSS-----K----DIITWNSLICGYVLHGFWHAALDLFDQMKSF 595 (868)
Q Consensus 545 y~k~g~--------------------~~~A~~~f~~~~~-----~----d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 595 (868)
|...|+ +++|...|++... . ...+|+.+...|...|++++|++.|++..+.
T Consensus 137 ~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 216 (406)
T 3sf4_A 137 YHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI 216 (406)
T ss_dssp HHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHH
T ss_pred HHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 777777 7777666664321 1 1346777888888889999999888887652
Q ss_pred C-CCCC----HHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCC----hhHHHHHHHhhhhcCChHHHHHHHHhC---
Q 047992 596 G-LKPN----RGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPM----IEHYSAMIDLYGRSGKLEEAMEFIEDM--- 663 (868)
Q Consensus 596 g-~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~y~~lvd~l~r~g~~~eA~~~i~~~--- 663 (868)
. -.++ ..++..+...+...|+.++|..+|+...+...-.++ ...+..+..++.+.|++++|.+.+++.
T Consensus 217 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 296 (406)
T 3sf4_A 217 AKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 296 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 1 0122 136677777888899999999999877653322222 456778888999999999999998876
Q ss_pred -CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCC------CCchhHHHHHHHHhhcCCChh
Q 047992 664 -PIEPD----SSIWEALLTACRIHGNIDLAVLAIERLFDLEP------GDVLIQRLILQIYAICGKPED 721 (868)
Q Consensus 664 -~~~p~----~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p------~~~~~~~~l~~~y~~~g~~~~ 721 (868)
+..++ ..+|..+...+...|+++.|...+++++++.+ ....++..|+.+|...|+...
T Consensus 297 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 297 AQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 11222 44788888889999999999999999998743 346678889999999987743
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.29 E-value=6.1e-10 Score=114.68 Aligned_cols=223 Identities=12% Similarity=-0.065 Sum_probs=158.5
Q ss_pred CeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 047992 464 NTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLID 543 (868)
Q Consensus 464 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~ 543 (868)
+..++..+...|...|++++|+..|++..+. .+...+..|..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--------------------------------------~~~~a~~~lg~ 46 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--------------------------------------KENSGCFNLGV 46 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------------------------------------TCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC--------------------------------------CCHHHHHHHHH
Confidence 4556666677777777777777777776541 12334455666
Q ss_pred HHHh----cCCHHHHHHHHhcCCC-CCceecHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc-
Q 047992 544 TYAK----SGNIVYSRTIFDGMSS-KDIITWNSLICGYVL----HGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSL- 613 (868)
Q Consensus 544 ~y~k----~g~~~~A~~~f~~~~~-~d~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~- 613 (868)
+|.. .|++++|...|++... .+..+|..+...|.. .|+.++|++.|++..+.+ +...+..+...+..
T Consensus 47 ~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~ 123 (273)
T 1ouv_A 47 LYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDG 123 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHC
T ss_pred HHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcC
Confidence 6666 7777777777776542 356667777777777 778888888888777754 55666666666776
Q ss_pred ---cCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----c
Q 047992 614 ---AGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGR----SGKLEEAMEFIEDMPIEPDSSIWEALLTACRI----H 682 (868)
Q Consensus 614 ---~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r----~g~~~eA~~~i~~~~~~p~~~~w~~ll~a~~~----~ 682 (868)
.|+.++|..+|+...+. + +...+..+..+|.+ .|++++|.+.+++.--..+...+..|...+.. .
T Consensus 124 ~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~ 199 (273)
T 1ouv_A 124 KVVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGAT 199 (273)
T ss_dssp SSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred CCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCC
Confidence 78888888888777662 2 34556666777776 78888888888876222455677777777777 8
Q ss_pred CCHHHHHHHHHHHhccCCCCchhHHHHHHHHhh----cCCChhHHHHHHHHHhcC
Q 047992 683 GNIDLAVLAIERLFDLEPGDVLIQRLILQIYAI----CGKPEDALKVRKLERENT 733 (868)
Q Consensus 683 ~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~----~g~~~~a~~~~~~m~~~~ 733 (868)
++++.|...++++++.+| +.++..|+.+|.. .|++++|.+..+...+.|
T Consensus 200 ~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 200 KNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp CCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 888888888888888876 6778888888888 888888888777665554
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.28 E-value=1.9e-10 Score=118.46 Aligned_cols=228 Identities=11% Similarity=-0.034 Sum_probs=179.2
Q ss_pred CeeehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHh----cCChhHHHHHHHHhhcCCCCCCHHhH
Q 047992 428 NVITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQ----LGQKNNALGVFRKMQSSCFYPNCVTI 503 (868)
Q Consensus 428 ~~~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~ 503 (868)
+..++..+...|...|++++|...|++..+ +.+...+..+...|.. .+++++|+..|++..+.+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~----~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-------- 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD----LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-------- 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--------
Confidence 455677788889999999999999999987 3455778888888888 999999999988876432
Q ss_pred HHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----cCCHHHHHHHHhcCCC-CCceecHHHHHHHHh
Q 047992 504 LSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAK----SGNIVYSRTIFDGMSS-KDIITWNSLICGYVL 578 (868)
Q Consensus 504 ~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k----~g~~~~A~~~f~~~~~-~d~~~~~~li~~~~~ 578 (868)
++..+..|..+|.. .|++++|.+.|++... .+..++..+...|..
T Consensus 73 ------------------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~ 122 (273)
T 1ouv_A 73 ------------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHD 122 (273)
T ss_dssp ------------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------------------------------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHc
Confidence 34445566777777 8888888888876543 466678888888888
Q ss_pred ----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc----cCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhh-
Q 047992 579 ----HGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSL----AGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGR- 649 (868)
Q Consensus 579 ----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r- 649 (868)
.|+.++|++.|++..+.+ +...+..+...+.. .++.++|..+|+...+. .+...+..+..+|.+
T Consensus 123 ~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g 195 (273)
T 1ouv_A 123 GKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHG 195 (273)
T ss_dssp CSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHT
T ss_pred CCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcC
Confidence 889999999999988865 44556666666766 88999999999987763 235667778888888
Q ss_pred ---cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhccCCCCch
Q 047992 650 ---SGKLEEAMEFIEDMPIEPDSSIWEALLTACRI----HGNIDLAVLAIERLFDLEPGDVL 704 (868)
Q Consensus 650 ---~g~~~eA~~~i~~~~~~p~~~~w~~ll~a~~~----~~~~~~a~~~~~~~~~l~p~~~~ 704 (868)
.|++++|.+.+++.--..+...+..|...+.. .+|.+.|...++++++++|+++.
T Consensus 196 ~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~ 257 (273)
T 1ouv_A 196 EGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGAC 257 (273)
T ss_dssp CSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHH
T ss_pred CCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999887222336677888888888 89999999999999999997543
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.28 E-value=1.9e-10 Score=118.47 Aligned_cols=237 Identities=12% Similarity=-0.040 Sum_probs=155.7
Q ss_pred CChHHHHHHHhhcCCC-------ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCccChhhHHHHHHHHHhcCChHHHH
Q 047992 206 GKLIWARRFFESMDEK-------DGVAWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQLGQCDVAM 278 (868)
Q Consensus 206 g~~~~A~~~f~~~~~~-------d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 278 (868)
|++++|...|+++... +...|..+...+...|++++|++.|++..... +.+..++..+...|...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 3444555555443321 34456677777777777777777777777653 235667777777888888888888
Q ss_pred HHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcccHHHHHHHHhchhhHHHHHHHHHHHHHhC
Q 047992 279 EMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLAVKMG 358 (868)
Q Consensus 279 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g 358 (868)
+.|++..+..+. +..+|..+...|.+.|++++|+..|+++... .|+.......+..+...|+++.+...+.......
T Consensus 98 ~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 98 EAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 888877776443 5677888888888888888888888888653 4555555555555666788888888887777664
Q ss_pred CCCCccHHHHHHHHHHcCCCHHHHHHHHHhcCCCC-------eehHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCeee
Q 047992 359 FTDDVLVGNSLINMYSKCEELEAAERVFDMIKDKD-------VYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVIT 431 (868)
Q Consensus 359 ~~~~~~~~~~li~~y~~~g~~~~A~~vf~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 431 (868)
+++...+ .++..+...++.++|...++.....+ ..+|..+...|.+.|++++|...|++..+.. |+.
T Consensus 175 -~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~-- 248 (275)
T 1xnf_A 175 -DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN-- 248 (275)
T ss_dssp -CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT--
T ss_pred -CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh--
Confidence 2333333 46777777888888888888776642 3556677777777777777777777777543 221
Q ss_pred hhhHHHHHHhcCCHHHHHHHH
Q 047992 432 WNVLISGYIQNGNEDEAVDLF 452 (868)
Q Consensus 432 ~~~li~~~~~~g~~~~A~~~f 452 (868)
+.....++...|++++|++.+
T Consensus 249 ~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHhhHHHH
Confidence 333344555666666665554
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.27 E-value=5.5e-11 Score=126.17 Aligned_cols=196 Identities=16% Similarity=0.085 Sum_probs=140.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCCC-----CC----ceecHHHHHHHHhcCC--------------------hHHHH
Q 047992 536 PVMNSLIDTYAKSGNIVYSRTIFDGMSS-----KD----IITWNSLICGYVLHGF--------------------WHAAL 586 (868)
Q Consensus 536 ~~~~~Li~~y~k~g~~~~A~~~f~~~~~-----~d----~~~~~~li~~~~~~g~--------------------~~~A~ 586 (868)
.++..+...|...|++++|...|++... ++ ..++..+...|...|+ +++|+
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 3455667777777777777777765431 12 2366777777778888 88888
Q ss_pred HHHHHHHHC----CCCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCC----hhHHHHHHHhhhhcCChHHHH
Q 047992 587 DLFDQMKSF----GLKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPM----IEHYSAMIDLYGRSGKLEEAM 657 (868)
Q Consensus 587 ~l~~~m~~~----g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~y~~lvd~l~r~g~~~eA~ 657 (868)
+.+++.... +-.|.. ..+..+...+...|+.++|..+|+...+...-.++ ...+..+..++.+.|++++|.
T Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 243 (338)
T 3ro2_A 164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 243 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 888776541 112222 35666677788889999999888877653322222 236777888889999999999
Q ss_pred HHHHhC----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC------chhHHHHHHHHhhcCCChhHH
Q 047992 658 EFIEDM----PIEPD----SSIWEALLTACRIHGNIDLAVLAIERLFDLEPGD------VLIQRLILQIYAICGKPEDAL 723 (868)
Q Consensus 658 ~~i~~~----~~~p~----~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~------~~~~~~l~~~y~~~g~~~~a~ 723 (868)
+.+++. +..++ ..++..+...+...|+++.|...+++++++.|.. ...+..++.+|...|++++|.
T Consensus 244 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 323 (338)
T 3ro2_A 244 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM 323 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 888876 11222 3477778888899999999999999999876643 347888999999999999999
Q ss_pred HHHHHHHh
Q 047992 724 KVRKLERE 731 (868)
Q Consensus 724 ~~~~~m~~ 731 (868)
+..+...+
T Consensus 324 ~~~~~a~~ 331 (338)
T 3ro2_A 324 HFAEKHLE 331 (338)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98776644
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.27 E-value=2.8e-11 Score=116.37 Aligned_cols=167 Identities=14% Similarity=0.129 Sum_probs=143.6
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHH
Q 047992 534 SLPVMNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR-GTFLSIIL 609 (868)
Q Consensus 534 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~ 609 (868)
+..+|..|...|.+.|++++|.+.|++.. +.+..+|..+...|...|++++|++.+++... ..|+. ..+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVV--LDTTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCchhHHHHHHHHH
Confidence 56789999999999999999999999764 56788999999999999999999999999988 45554 56666777
Q ss_pred HhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 047992 610 AHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDL 687 (868)
Q Consensus 610 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~ 687 (868)
.+...++.+++...+....+.. +.+...+..+..+|.+.|++++|++.+++. ...| +..+|..+..++...|+++.
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN--TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 8889999999999999887742 234567888999999999999999999987 4445 45689999999999999999
Q ss_pred HHHHHHHHhccCCCCch
Q 047992 688 AVLAIERLFDLEPGDVL 704 (868)
Q Consensus 688 a~~~~~~~~~l~p~~~~ 704 (868)
|...++++++++|+++.
T Consensus 160 A~~~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 160 AVKYFKKALEKEEKKAK 176 (184)
T ss_dssp HHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHhCCccCHH
Confidence 99999999999998643
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.6e-11 Score=132.85 Aligned_cols=268 Identities=15% Similarity=0.078 Sum_probs=196.0
Q ss_pred eehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCC----eeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHH
Q 047992 430 ITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRN----TASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILS 505 (868)
Q Consensus 430 ~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 505 (868)
..+......+...|++++|...|++..+.. +.+ ...|..+...|...|++++|...+++....
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----------- 76 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTL----------- 76 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-----------
Confidence 334455666777788888888887776643 222 245666677777777777777777765421
Q ss_pred HHHHHhchhchHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----CC----ceecHHHHHH
Q 047992 506 VLPACAYLVASNKVKEIHGCVLRRSLES-SLPVMNSLIDTYAKSGNIVYSRTIFDGMSS-----KD----IITWNSLICG 575 (868)
Q Consensus 506 ll~a~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~-----~d----~~~~~~li~~ 575 (868)
..+.+..+ ...++..+...|...|++++|...|++... ++ ..+|+.+...
T Consensus 77 --------------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 136 (406)
T 3sf4_A 77 --------------------ARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNV 136 (406)
T ss_dssp --------------------HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred --------------------HHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence 00001111 234567788899999999999998886542 22 3478889999
Q ss_pred HHhcCC--------------------hHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhhh
Q 047992 576 YVLHGF--------------------WHAALDLFDQMKSF----GLKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITEC 630 (868)
Q Consensus 576 ~~~~g~--------------------~~~A~~l~~~m~~~----g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 630 (868)
|...|+ +++|++.|++.... +-.|.. .++..+...+...|++++|..+|+...+.
T Consensus 137 ~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 216 (406)
T 3sf4_A 137 YHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI 216 (406)
T ss_dssp HHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHH
T ss_pred HHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 999999 99999999887652 222322 46677778899999999999999988764
Q ss_pred cCCCCC----hhHHHHHHHhhhhcCChHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhcc
Q 047992 631 YQIIPM----IEHYSAMIDLYGRSGKLEEAMEFIEDM----PIEPD----SSIWEALLTACRIHGNIDLAVLAIERLFDL 698 (868)
Q Consensus 631 ~~~~p~----~~~y~~lvd~l~r~g~~~eA~~~i~~~----~~~p~----~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l 698 (868)
..-.++ ...|..+..++.+.|++++|.+.+++. +..++ ..++..+...+...|+++.|...+++++++
T Consensus 217 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 296 (406)
T 3sf4_A 217 AKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 296 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 333333 236888899999999999999999876 21222 447888888999999999999999999998
Q ss_pred CCCC------chhHHHHHHHHhhcCCChhHHHHHHHHH
Q 047992 699 EPGD------VLIQRLILQIYAICGKPEDALKVRKLER 730 (868)
Q Consensus 699 ~p~~------~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 730 (868)
.|.. +..+..++.+|...|++++|.+..+...
T Consensus 297 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 334 (406)
T 3sf4_A 297 AQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 334 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6654 5688899999999999999999766543
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=3e-11 Score=140.57 Aligned_cols=159 Identities=16% Similarity=0.108 Sum_probs=120.3
Q ss_pred ceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCC-hhHHHHH
Q 047992 566 IITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPM-IEHYSAM 643 (868)
Q Consensus 566 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~l 643 (868)
..+|+.+...|.+.|++++|++.|++.++ +.|+. ..+..+..++...|+.++|+..|+...+ +.|+ .+.|..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~---l~P~~~~a~~nL 83 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHH
Confidence 34566666666666666666666666666 45653 5566666666666777777776666655 2343 4567777
Q ss_pred HHhhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChh
Q 047992 644 IDLYGRSGKLEEAMEFIEDM-PIEPD-SSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPED 721 (868)
Q Consensus 644 vd~l~r~g~~~eA~~~i~~~-~~~p~-~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~ 721 (868)
..+|.+.|++++|++.+++. .+.|+ ...|..|..++...|++++|+..++++++++|+++.+|..|+.+|...|+|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 77888888888888888776 44554 55899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 047992 722 ALKVRKLE 729 (868)
Q Consensus 722 a~~~~~~m 729 (868)
|.+..+..
T Consensus 164 A~~~~~ka 171 (723)
T 4gyw_A 164 YDERMKKL 171 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98865544
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.25 E-value=2.1e-11 Score=134.04 Aligned_cols=268 Identities=13% Similarity=0.028 Sum_probs=184.1
Q ss_pred ehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCe----eehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHH
Q 047992 431 TWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNT----ASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSV 506 (868)
Q Consensus 431 t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 506 (868)
.+..+...+...|++++|...|+++.+.. +.+. ..|..+...|...|++++|+..+++.....
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----------- 116 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLA----------- 116 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-----------
Confidence 34455667778888888888888876653 2222 356777777888888888888877764310
Q ss_pred HHHHhchhchHHHHHHHHHHHHhCCC-CChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---------CCceecHHHHHHH
Q 047992 507 LPACAYLVASNKVKEIHGCVLRRSLE-SSLPVMNSLIDTYAKSGNIVYSRTIFDGMSS---------KDIITWNSLICGY 576 (868)
Q Consensus 507 l~a~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---------~d~~~~~~li~~~ 576 (868)
.+.+-. ....++..+...|...|++++|...|++... ....+|+.+...|
T Consensus 117 --------------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 176 (411)
T 4a1s_A 117 --------------------KSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVY 176 (411)
T ss_dssp --------------------HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred --------------------HHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Confidence 000001 1234566677777788888888777775432 1234677777788
Q ss_pred HhcCC-----------------hHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCC
Q 047992 577 VLHGF-----------------WHAALDLFDQMKSF----GLKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITECYQII 634 (868)
Q Consensus 577 ~~~g~-----------------~~~A~~l~~~m~~~----g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 634 (868)
...|+ +++|++.|++..+. +-.|.. .++..+...+...|++++|..+|+...+...-.
T Consensus 177 ~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 256 (411)
T 4a1s_A 177 HAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF 256 (411)
T ss_dssp HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc
Confidence 88888 88888888776541 112222 466667777888888888888888776543222
Q ss_pred CC----hhHHHHHHHhhhhcCChHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 047992 635 PM----IEHYSAMIDLYGRSGKLEEAMEFIEDM----PIEPD----SSIWEALLTACRIHGNIDLAVLAIERLFDLEPGD 702 (868)
Q Consensus 635 p~----~~~y~~lvd~l~r~g~~~eA~~~i~~~----~~~p~----~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~ 702 (868)
++ ...+..+..+|...|++++|.+.+++. +-..+ ..+|..+...+...|+++.|...+++++++.|+.
T Consensus 257 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 336 (411)
T 4a1s_A 257 GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL 336 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 22 226777888888999999998888776 11112 3477788888889999999999999998876543
Q ss_pred ------chhHHHHHHHHhhcCCChhHHHHHHHHHh
Q 047992 703 ------VLIQRLILQIYAICGKPEDALKVRKLERE 731 (868)
Q Consensus 703 ------~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 731 (868)
...+..|+.+|...|++++|.+..+...+
T Consensus 337 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 337 GDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34788899999999999999987665543
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.25 E-value=5.9e-10 Score=117.12 Aligned_cols=168 Identities=12% Similarity=0.078 Sum_probs=135.6
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCce-ecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHH
Q 047992 534 SLPVMNSLIDTYAKSGNIVYSRTIFDGMSS---KDII-TWNSLICGYVLHGFWHAALDLFDQMKSFGLKPN-RGTFLSII 608 (868)
Q Consensus 534 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~d~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll 608 (868)
+..++..++..+.+.|++++|.++|++... .+.. .|..++..+.+.|+.++|.++|++..+. .|+ ...|....
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a 175 (308)
T 2ond_A 98 NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAA 175 (308)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHH
Confidence 556788888999999999999999997643 3444 7999999999999999999999999984 443 34454443
Q ss_pred HHhh-ccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC----CCCC--CHHHHHHHHHHHHh
Q 047992 609 LAHS-LAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM----PIEP--DSSIWEALLTACRI 681 (868)
Q Consensus 609 ~a~~-~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~----~~~p--~~~~w~~ll~a~~~ 681 (868)
.... ..|+.++|+.+|+...+..+- +...|..+++.+.+.|++++|..++++. ++.| ...+|..++.....
T Consensus 176 ~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~ 253 (308)
T 2ond_A 176 LMEYYCSKDKSVAFKIFELGLKKYGD--IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESN 253 (308)
T ss_dssp HHHHHTSCCHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 3332 379999999999998875443 4567889999999999999999999987 2455 35699999999999
Q ss_pred cCCHHHHHHHHHHHhccCCCCchh
Q 047992 682 HGNIDLAVLAIERLFDLEPGDVLI 705 (868)
Q Consensus 682 ~~~~~~a~~~~~~~~~l~p~~~~~ 705 (868)
+|+.+.|..++++++++.|+++..
T Consensus 254 ~g~~~~a~~~~~~a~~~~p~~~~~ 277 (308)
T 2ond_A 254 IGDLASILKVEKRRFTAFREEYEG 277 (308)
T ss_dssp HSCHHHHHHHHHHHHHHTTTTTSS
T ss_pred cCCHHHHHHHHHHHHHHccccccc
Confidence 999999999999999999986643
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.9e-10 Score=114.91 Aligned_cols=180 Identities=13% Similarity=0.011 Sum_probs=113.0
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhcCC---C-CCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHH
Q 047992 534 SLPVMNSLIDTYAKSGNIVYSRTIFDGMS---S-KDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR-GTFLSII 608 (868)
Q Consensus 534 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~-~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll 608 (868)
|+..+..+...|.+.|++++|...|++.. + ++...|..+...|...|++++|++.|++..+ ..|+. ..+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHHH
Confidence 34455555666666666666666666432 2 4555555566666666666666666666665 45544 4455555
Q ss_pred HHhhccCChHHHHHHHHHhhhhcCCCCCh-----hHHHHHHHhhhhcCChHHHHHHHHhC-CCCCC--H-HHHHHHHHHH
Q 047992 609 LAHSLAGMVDLGKKVFCSITECYQIIPMI-----EHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPD--S-SIWEALLTAC 679 (868)
Q Consensus 609 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-----~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~--~-~~w~~ll~a~ 679 (868)
.++...|+.++|...|+...+..+-.|.. ..|..+..++.+.|++++|++.++++ ...|+ . ..|..+...+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 163 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLF 163 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 56666666666666666665533222211 34555666666666666666666665 44554 2 3555555555
Q ss_pred HhcCCH---------------------------HHHHHHHHHHhccCCCCchhHHHHHHHHhh
Q 047992 680 RIHGNI---------------------------DLAVLAIERLFDLEPGDVLIQRLILQIYAI 715 (868)
Q Consensus 680 ~~~~~~---------------------------~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 715 (868)
...|+. +.|...++++++++|+++.+...|+.+...
T Consensus 164 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~~ 226 (228)
T 4i17_A 164 YNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKAM 226 (228)
T ss_dssp HHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHh
Confidence 555555 999999999999999999999988887654
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.22 E-value=3.7e-11 Score=127.53 Aligned_cols=270 Identities=13% Similarity=0.098 Sum_probs=168.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHhHhCCCCCC-----eeehhhHHHHHHhcCCHHHHHHHHHhcccC----CCCCCCeeehh
Q 047992 399 SMIAGYCQAGYCGKAYELFIKMQESDVPPN-----VITWNVLISGYIQNGNEDEAVDLFQRMGKN----DKVKRNTASWN 469 (868)
Q Consensus 399 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-----~~t~~~li~~~~~~g~~~~A~~~f~~m~~~----~~~~~~~~~~~ 469 (868)
.....+...|++++|+..|++..+.. |+ ...+..+...|...|++++|...|++.... +..+....++.
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 87 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 87 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 34455666777777777777776653 33 245566677777778888887777765332 11122244566
Q ss_pred hhHHHHHhcCChhHHHHHHHHhhcCCC-CCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 047992 470 SLIAGYQQLGQKNNALGVFRKMQSSCF-YPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKS 548 (868)
Q Consensus 470 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~ 548 (868)
.+...|...|++++|...+++...... .++... ...++..+...|...
T Consensus 88 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-------------------------------~~~~~~~l~~~~~~~ 136 (338)
T 3ro2_A 88 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVG-------------------------------EARALYNLGNVYHAK 136 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH-------------------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchH-------------------------------HHHHHHHHHHHHHHc
Confidence 777777788888888887777543100 011000 112344455555555
Q ss_pred CC--------------------HHHHHHHHhcCCC-----C----CceecHHHHHHHHhcCChHHHHHHHHHHHHCCC-C
Q 047992 549 GN--------------------IVYSRTIFDGMSS-----K----DIITWNSLICGYVLHGFWHAALDLFDQMKSFGL-K 598 (868)
Q Consensus 549 g~--------------------~~~A~~~f~~~~~-----~----d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~ 598 (868)
|+ +++|.+.|++... + ....+..+...|...|++++|++.|++..+... .
T Consensus 137 ~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 216 (338)
T 3ro2_A 137 GKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 216 (338)
T ss_dssp HHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred CcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 55 5555555554321 1 123566677777778888888888877764210 0
Q ss_pred CC----HHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCC----hhHHHHHHHhhhhcCChHHHHHHHHhC----CCC
Q 047992 599 PN----RGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPM----IEHYSAMIDLYGRSGKLEEAMEFIEDM----PIE 666 (868)
Q Consensus 599 p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~y~~lvd~l~r~g~~~eA~~~i~~~----~~~ 666 (868)
++ ..++..+...+...|+.++|..+|+...+...-.++ ...+..+..++.+.|++++|.+.++++ +..
T Consensus 217 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 296 (338)
T 3ro2_A 217 GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 296 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 11 125666667778888888888888876553222222 446777888888999999998888776 111
Q ss_pred CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 047992 667 PD----SSIWEALLTACRIHGNIDLAVLAIERLFDLEPG 701 (868)
Q Consensus 667 p~----~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~ 701 (868)
++ ..+|..+...+...|+++.|...+++++++.|+
T Consensus 297 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 297 KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 22 337778888899999999999999999998875
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.21 E-value=1.2e-08 Score=117.08 Aligned_cols=147 Identities=11% Similarity=0.064 Sum_probs=79.1
Q ss_pred hhHHHHHHHHhHHCCCCCCcchHHHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHcCC---hHHHHHH
Q 047992 138 WREVVELFFLMVQDGLFPDDFLFPKILQACGNCGDFEAGKLMHSLVIKLGMSCVRRVRNSVLAVYVKCGK---LIWARRF 214 (868)
Q Consensus 138 ~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~---~~~A~~~ 214 (868)
..+.+..|++.+... +-|..+|..++..+...+.++.++.+++.+++. ++.....|..-+..-.+.|+ .+.+..+
T Consensus 48 ~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp CSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 444454555544432 345566777777776666777777777777665 34455566666666666666 6777777
Q ss_pred HhhcCC-----CChhhHHHHHHHHHhcCCh--------hHHHHHHHHHHH-cCC-ccC-hhhHHHHHHHHHh--------
Q 047992 215 FESMDE-----KDGVAWNSMISGYFQIGEN--------DEAHRLFDKMCR-EEI-KLG-VVTFNILIRSYNQ-------- 270 (868)
Q Consensus 215 f~~~~~-----~d~~~~~~li~~~~~~g~~--------~~A~~l~~~m~~-~g~-~p~-~~~~~~li~~~~~-------- 270 (868)
|++... +++..|...+.-..+.++. +...++|+.... .|. .|+ ...|...+.....
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 766432 4555666666555444432 223355555443 244 333 2455555544322
Q ss_pred -cCChHHHHHHHHHHHh
Q 047992 271 -LGQCDVAMEMVKRMES 286 (868)
Q Consensus 271 -~g~~~~A~~~~~~m~~ 286 (868)
.++++.+..+|+....
T Consensus 206 eq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHhHHHHHHHHHHHHHh
Confidence 2234555566655553
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.18 E-value=7.2e-11 Score=129.79 Aligned_cols=274 Identities=14% Similarity=0.093 Sum_probs=193.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCe-----eehhhHHHHHHhcCCHHHHHHHHHhcccC----CCCCCCee
Q 047992 396 SWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNV-----ITWNVLISGYIQNGNEDEAVDLFQRMGKN----DKVKRNTA 466 (868)
Q Consensus 396 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-----~t~~~li~~~~~~g~~~~A~~~f~~m~~~----~~~~~~~~ 466 (868)
.+..+...+...|++++|+..|++..+.+ |+. ..+..+...|...|++++|...|++..+. +..+....
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 45566778899999999999999999874 332 46788889999999999999999988543 11133446
Q ss_pred ehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 047992 467 SWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYA 546 (868)
Q Consensus 467 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~ 546 (868)
.+..+...|...|++++|+..+++...... ..++ ......++..+...|.
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~---------------~~~~---------------~~~~~~~~~~l~~~~~ 177 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLAR---------------QLGD---------------RLSEGRALYNLGNVYH 177 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---------------HHTC---------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHH---------------Hhhc---------------hHHHHHHHHHHHHHHH
Confidence 777888888899999999998888653100 0000 0012234555666666
Q ss_pred hcCC-----------------HHHHHHHHhcCCC-----C----CceecHHHHHHHHhcCChHHHHHHHHHHHHCCC-CC
Q 047992 547 KSGN-----------------IVYSRTIFDGMSS-----K----DIITWNSLICGYVLHGFWHAALDLFDQMKSFGL-KP 599 (868)
Q Consensus 547 k~g~-----------------~~~A~~~f~~~~~-----~----d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p 599 (868)
..|+ +++|.+.|++... . ....|..+...|...|++++|++.|++..+... .+
T Consensus 178 ~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (411)
T 4a1s_A 178 AKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG 257 (411)
T ss_dssp HHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC
Confidence 6666 6666666654321 1 234677778888888888888888888766210 01
Q ss_pred C----HHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCC----hhHHHHHHHhhhhcCChHHHHHHHHhC-C---CCC
Q 047992 600 N----RGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPM----IEHYSAMIDLYGRSGKLEEAMEFIEDM-P---IEP 667 (868)
Q Consensus 600 ~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~y~~lvd~l~r~g~~~eA~~~i~~~-~---~~p 667 (868)
+ ...+..+..++...|++++|..+|+...+...-..+ ...+..+..++.+.|++++|.+.+++. . -.+
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 337 (411)
T 4a1s_A 258 DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG 337 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 1 126677777888889999999988877653321111 456778888999999999999998876 1 112
Q ss_pred C----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 047992 668 D----SSIWEALLTACRIHGNIDLAVLAIERLFDLEPG 701 (868)
Q Consensus 668 ~----~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~ 701 (868)
+ ..++..+...+...|+.+.|...+++++++.+.
T Consensus 338 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 338 DRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 2 337777888899999999999999999998774
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.17 E-value=1e-09 Score=115.17 Aligned_cols=211 Identities=12% Similarity=0.029 Sum_probs=165.0
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHHH-------hcCCH-------HHHHHHHhcCC----CCCceecHHHHHHHHhc
Q 047992 518 KVKEIHGCVLRRSLESSLPVMNSLIDTYA-------KSGNI-------VYSRTIFDGMS----SKDIITWNSLICGYVLH 579 (868)
Q Consensus 518 ~~~~i~~~~~~~~~~~~~~~~~~Li~~y~-------k~g~~-------~~A~~~f~~~~----~~d~~~~~~li~~~~~~ 579 (868)
.+..++..+++. .+.++.+|..++..+. +.|++ ++|..+|++.. +.+...|..++..+...
T Consensus 34 ~a~~~~~~al~~-~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 34 RVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 444455555542 2336667777777665 45885 89999999653 34566899999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhh-hcCChHHH
Q 047992 580 GFWHAALDLFDQMKSFGLKPNRG--TFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYG-RSGKLEEA 656 (868)
Q Consensus 580 g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~-r~g~~~eA 656 (868)
|+.++|.++|++.++ +.|+.. .|..+...+...|.+++|+.+|+...+.. .++...|...+.+.. ..|+.++|
T Consensus 113 ~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 113 MKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST--TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred CCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999998 678653 78888888999999999999999988732 233445554444432 37999999
Q ss_pred HHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc---CCC-CchhHHHHHHHHhhcCCChhHHHHHHHHH
Q 047992 657 MEFIEDM-PIE-PDSSIWEALLTACRIHGNIDLAVLAIERLFDL---EPG-DVLIQRLILQIYAICGKPEDALKVRKLER 730 (868)
Q Consensus 657 ~~~i~~~-~~~-p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l---~p~-~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 730 (868)
.+.++++ ... .+..+|..++..+...|+++.|+.+++++++. .|+ +...|..+++.+...|++++|..+.+.+.
T Consensus 189 ~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 189 FKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999987 222 35679999999999999999999999999995 564 67788999999999999999999888776
Q ss_pred hcC
Q 047992 731 ENT 733 (868)
Q Consensus 731 ~~~ 733 (868)
+..
T Consensus 269 ~~~ 271 (308)
T 2ond_A 269 TAF 271 (308)
T ss_dssp HHT
T ss_pred HHc
Confidence 554
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.17 E-value=3.5e-11 Score=126.39 Aligned_cols=166 Identities=13% Similarity=0.058 Sum_probs=75.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----------CCceecHHHHHHHHhcCChHHHHHHHHHHHHC------CC
Q 047992 535 LPVMNSLIDTYAKSGNIVYSRTIFDGMSS-----------KDIITWNSLICGYVLHGFWHAALDLFDQMKSF------GL 597 (868)
Q Consensus 535 ~~~~~~Li~~y~k~g~~~~A~~~f~~~~~-----------~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~ 597 (868)
..++..+...|...|++++|...|++... .....|+.+...|...|++++|++.|+++.+. +.
T Consensus 111 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 190 (311)
T 3nf1_A 111 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPD 190 (311)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTT
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 34455566666666666666666654431 12234556666666666666666666666552 11
Q ss_pred CCCH-HHHHHHHHHhhccCChHHHHHHHHHhhhhc------CCCCC-------hhHHHHHHHhhhhcCChHHHHHHHHhC
Q 047992 598 KPNR-GTFLSIILAHSLAGMVDLGKKVFCSITECY------QIIPM-------IEHYSAMIDLYGRSGKLEEAMEFIEDM 663 (868)
Q Consensus 598 ~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~------~~~p~-------~~~y~~lvd~l~r~g~~~eA~~~i~~~ 663 (868)
.|+. .++..+..++...|++++|..+|+.+.+.. ...|. ...+..+...+...+.+.+|...++..
T Consensus 191 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 270 (311)
T 3nf1_A 191 DPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKAC 270 (311)
T ss_dssp CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC------
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhc
Confidence 3332 344555556666666666666666555421 01111 111112222233333444444444443
Q ss_pred C-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCC
Q 047992 664 P-IEPD-SSIWEALLTACRIHGNIDLAVLAIERLFDLEP 700 (868)
Q Consensus 664 ~-~~p~-~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p 700 (868)
. ..|+ ..+|..+..++...|+++.|...+++++++.|
T Consensus 271 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 271 KVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp ---CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred CCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 1 2222 22455555555555555555555555555544
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.13 E-value=6.9e-10 Score=106.18 Aligned_cols=159 Identities=18% Similarity=0.131 Sum_probs=97.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHh
Q 047992 536 PVMNSLIDTYAKSGNIVYSRTIFDGMSS---KDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPN-RGTFLSIILAH 611 (868)
Q Consensus 536 ~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~ 611 (868)
..+..+...|.+.|++++|...|+++.. .+...|..+...|...|++++|++.|+++.+. .|+ ...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHH
Confidence 4456667777777777777777776653 34455666666677777777777777776652 332 23344444444
Q ss_pred hccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 047992 612 SLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPIEPDSSIWEALLTACRIHGNIDLAVLA 691 (868)
Q Consensus 612 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~~~~p~~~~w~~ll~a~~~~~~~~~a~~~ 691 (868)
...|+.++|..+|+.+.+. .+.+..+|..+...+...|+++.|...
T Consensus 87 ~~~~~~~~A~~~~~~~~~~----------------------------------~~~~~~~~~~~a~~~~~~~~~~~A~~~ 132 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA----------------------------------NPINFNVRFRLGVALDNLGRFDEAIDS 132 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH----------------------------------CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc----------------------------------CcHhHHHHHHHHHHHHHcCcHHHHHHH
Confidence 4444444444444444332 122344666666666666777777777
Q ss_pred HHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHH
Q 047992 692 IERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLER 730 (868)
Q Consensus 692 ~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 730 (868)
++++++..|+++..+..++.+|...|++++|.+..+...
T Consensus 133 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 171 (186)
T 3as5_A 133 FKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKAN 171 (186)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 777777777777777777777777777777776655543
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.11 E-value=1.2e-09 Score=104.58 Aligned_cols=170 Identities=14% Similarity=0.048 Sum_probs=128.6
Q ss_pred HhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHH
Q 047992 501 VTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYV 577 (868)
Q Consensus 501 ~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~ 577 (868)
..+..+...+...|+.+.+...+..+++. .+.+..++..+...|.+.|++++|...|+++. +.+...|..+...|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDA-DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCT-TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 34555666778889999999998887663 22367888999999999999999999999764 456778999999999
Q ss_pred hcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHH
Q 047992 578 LHGFWHAALDLFDQMKSFGLKPN-RGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEA 656 (868)
Q Consensus 578 ~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA 656 (868)
..|++++|++.|+++.+. .|+ ...+..+..++...|+.++|..+|+.+.+.
T Consensus 88 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-------------------------- 139 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGL-------------------------- 139 (186)
T ss_dssp HHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------
T ss_pred HhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc--------------------------
Confidence 999999999999999884 443 345555555555555555555555554431
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHH
Q 047992 657 MEFIEDMPIEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQR 707 (868)
Q Consensus 657 ~~~i~~~~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~ 707 (868)
.+.+..+|..+...+...|+++.|...++++++++|+++....
T Consensus 140 --------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 182 (186)
T 3as5_A 140 --------RPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVELA 182 (186)
T ss_dssp --------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCGGGG
T ss_pred --------CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchhhHh
Confidence 1234557777888888889999999999999999888776543
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.11 E-value=3.7e-10 Score=118.47 Aligned_cols=231 Identities=13% Similarity=0.089 Sum_probs=154.0
Q ss_pred HHhHHHHHHHHhchhchHHHHHHHHHHHHh-------CCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---------
Q 047992 500 CVTILSVLPACAYLVASNKVKEIHGCVLRR-------SLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMSS--------- 563 (868)
Q Consensus 500 ~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~-------~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--------- 563 (868)
..++..+...+...|+++.+...+..+++. ..+....++..+...|...|++++|...|++...
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 455666667778888888888888887763 2233556777888888888998888888876531
Q ss_pred --CCceecHHHHHHHHhcCChHHHHHHHHHHHHC------CCCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhhhc---
Q 047992 564 --KDIITWNSLICGYVLHGFWHAALDLFDQMKSF------GLKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITECY--- 631 (868)
Q Consensus 564 --~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~--- 631 (868)
....+|+.+...|...|++++|++.|+++.+. +-.|+. ..+..+...+...|++++|..+|+.+.+..
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 12456788888888888899999888888763 223433 456677778888888888888888876642
Q ss_pred --CCCC-ChhHHHHHHHhhhhcCChHHHHHHHHhCC----------CCCCHH-HHH------HHHHHHHhcCCHHHHHHH
Q 047992 632 --QIIP-MIEHYSAMIDLYGRSGKLEEAMEFIEDMP----------IEPDSS-IWE------ALLTACRIHGNIDLAVLA 691 (868)
Q Consensus 632 --~~~p-~~~~y~~lvd~l~r~g~~~eA~~~i~~~~----------~~p~~~-~w~------~ll~a~~~~~~~~~a~~~ 691 (868)
+..| ....+..+..+|.+.|++++|.+.++++- ..|... .|. .+...+...+.++.+...
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 266 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGW 266 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC--
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 1122 23467778888888888888888887651 111111 222 222233344556666667
Q ss_pred HHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHH
Q 047992 692 IERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLER 730 (868)
Q Consensus 692 ~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 730 (868)
++++.+..|.++..+..|+.+|...|++++|.+..+...
T Consensus 267 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 305 (311)
T 3nf1_A 267 YKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAM 305 (311)
T ss_dssp -------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 777777889999999999999999999999999876553
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.4e-09 Score=118.14 Aligned_cols=161 Identities=12% Similarity=0.097 Sum_probs=73.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCC-----CC----ceecHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCCH-H
Q 047992 537 VMNSLIDTYAKSGNIVYSRTIFDGMSS-----KD----IITWNSLICGYVLHGFWHAALDLFDQMKSF----GLKPNR-G 602 (868)
Q Consensus 537 ~~~~Li~~y~k~g~~~~A~~~f~~~~~-----~d----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~-~ 602 (868)
+++.+...|...|++++|...|++... ++ ..+|+.+...|...|++++|++.|++..+. +..|+. .
T Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 265 (383)
T 3ulq_A 186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQ 265 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHH
Confidence 344555555555555555555554321 11 124555555555555555555555555441 121222 3
Q ss_pred HHHHHHHHhhccCChHHHHHHHHHhhhhcCC---CCChhHHHHHHHhhhhcCC---hHHHHHHHHhCCCCCCHH-HHHHH
Q 047992 603 TFLSIILAHSLAGMVDLGKKVFCSITECYQI---IPMIEHYSAMIDLYGRSGK---LEEAMEFIEDMPIEPDSS-IWEAL 675 (868)
Q Consensus 603 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~---~p~~~~y~~lvd~l~r~g~---~~eA~~~i~~~~~~p~~~-~w~~l 675 (868)
++..+..++...|+.++|..+|+...+...- ......+..+..++...|+ +++|.+++++.+..|+.. ++..|
T Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~l 345 (383)
T 3ulq_A 266 AYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 4444455555555555555555544332111 1111123344444555555 555555555543333222 33344
Q ss_pred HHHHHhcCCHHHHHHHHHHHhc
Q 047992 676 LTACRIHGNIDLAVLAIERLFD 697 (868)
Q Consensus 676 l~a~~~~~~~~~a~~~~~~~~~ 697 (868)
...+...|+++.|...++++++
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 4444444555555555444444
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.05 E-value=7.2e-10 Score=123.88 Aligned_cols=177 Identities=8% Similarity=-0.047 Sum_probs=153.5
Q ss_pred HHHHHHHHhcCC---CCCceecHHHHHHHHhcCCh-HHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCChHHHHHHHH
Q 047992 551 IVYSRTIFDGMS---SKDIITWNSLICGYVLHGFW-HAALDLFDQMKSFGLKPN-RGTFLSIILAHSLAGMVDLGKKVFC 625 (868)
Q Consensus 551 ~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~-~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~ 625 (868)
+++|.+.++... +.+...|..+...|...|++ ++|++.|++.++ ..|+ ...+..+..++...|++++|..+|+
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVK--LEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455566665443 34677899999999999999 999999999998 5676 5788889999999999999999999
Q ss_pred HhhhhcCCCCChhHHHHHHHhhhhc---------CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc--------CCHH
Q 047992 626 SITECYQIIPMIEHYSAMIDLYGRS---------GKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIH--------GNID 686 (868)
Q Consensus 626 ~m~~~~~~~p~~~~y~~lvd~l~r~---------g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~--------~~~~ 686 (868)
...+ +.|+...+..+..+|.+. |++++|.+.+++. ...| +...|..|..++... |+++
T Consensus 162 ~al~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHh---hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 9876 468888899999999999 9999999999987 4445 466999999999888 9999
Q ss_pred HHHHHHHHHhccCC---CCchhHHHHHHHHhhcCCChhHHHHHHHHHhc
Q 047992 687 LAVLAIERLFDLEP---GDVLIQRLILQIYAICGKPEDALKVRKLEREN 732 (868)
Q Consensus 687 ~a~~~~~~~~~l~p---~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 732 (868)
.|...++++++++| +++.+|..|+.+|...|++++|.+..+...+.
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999 99999999999999999999999987766543
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.02 E-value=2.6e-09 Score=106.50 Aligned_cols=153 Identities=9% Similarity=-0.031 Sum_probs=132.3
Q ss_pred CCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCC-hhHHHH
Q 047992 564 KDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPM-IEHYSA 642 (868)
Q Consensus 564 ~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~ 642 (868)
.|+..|......+...|++++|++.|++.++....++...+..+..++...|++++|+.+|+...+ ..|+ ...|..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~ 81 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK---KNYNLANAYIG 81 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCSHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH---hCcchHHHHHH
Confidence 456778888899999999999999999999854336777777788899999999999999999886 3443 567888
Q ss_pred HHHhhhhcCChHHHHHHHHhC-CCCCC-H-------HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC--CchhHHHHHH
Q 047992 643 MIDLYGRSGKLEEAMEFIEDM-PIEPD-S-------SIWEALLTACRIHGNIDLAVLAIERLFDLEPG--DVLIQRLILQ 711 (868)
Q Consensus 643 lvd~l~r~g~~~eA~~~i~~~-~~~p~-~-------~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~--~~~~~~~l~~ 711 (868)
+..+|.+.|++++|.+.+++. ...|+ . .+|..+...+...|+++.|...++++++++|+ ++.+|..|+.
T Consensus 82 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 82 KSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 999999999999999999987 33343 3 45788888889999999999999999999999 9999999999
Q ss_pred HHhhcCCC
Q 047992 712 IYAICGKP 719 (868)
Q Consensus 712 ~y~~~g~~ 719 (868)
+|...|+.
T Consensus 162 ~~~~~~~~ 169 (228)
T 4i17_A 162 LFYNNGAD 169 (228)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999988
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.00 E-value=6.6e-09 Score=112.62 Aligned_cols=232 Identities=7% Similarity=0.040 Sum_probs=144.1
Q ss_pred HHHHhcCCHHHHHHHHHhcccCCCCCC----CeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhc
Q 047992 437 SGYIQNGNEDEAVDLFQRMGKNDKVKR----NTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAY 512 (868)
Q Consensus 437 ~~~~~~g~~~~A~~~f~~m~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 512 (868)
..+...|++++|...|++..+.....+ ...++..+...|...|++++|+..+.+....-..
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~--------------- 173 (378)
T 3q15_A 109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQN--------------- 173 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT---------------
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHh---------------
Confidence 344567777777777776654321111 2235556666666777777777666655421000
Q ss_pred hhchHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----CC----ceecHHHHHHHHhcCCh
Q 047992 513 LVASNKVKEIHGCVLRRSLES-SLPVMNSLIDTYAKSGNIVYSRTIFDGMSS-----KD----IITWNSLICGYVLHGFW 582 (868)
Q Consensus 513 ~~~~~~~~~i~~~~~~~~~~~-~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~-----~d----~~~~~~li~~~~~~g~~ 582 (868)
.+ +..+ ...+++.+...|...|++++|.+.|++... ++ ..+++.+...|...|++
T Consensus 174 ~~---------------~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~ 238 (378)
T 3q15_A 174 HP---------------LYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDD 238 (378)
T ss_dssp ST---------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred CC---------------CchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCH
Confidence 00 0000 133566777888888888888887775432 12 23677778888888888
Q ss_pred HHHHHHHHHHHHC---CCCCC-HHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCC---hhHHHHHHHhhhhcCC---
Q 047992 583 HAALDLFDQMKSF---GLKPN-RGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPM---IEHYSAMIDLYGRSGK--- 652 (868)
Q Consensus 583 ~~A~~l~~~m~~~---g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~y~~lvd~l~r~g~--- 652 (868)
++|++.|++..+. ...|+ ..++..+..++.+.|+.++|..+|+...+...-.++ ..++..+..++...|.
T Consensus 239 ~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~ 318 (378)
T 3q15_A 239 QMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERK 318 (378)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHH
T ss_pred HHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHH
Confidence 8888888887661 01232 356667777788888888888888877664332222 3345566666777777
Q ss_pred hHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhcc
Q 047992 653 LEEAMEFIEDMPIEPDSS-IWEALLTACRIHGNIDLAVLAIERLFDL 698 (868)
Q Consensus 653 ~~eA~~~i~~~~~~p~~~-~w~~ll~a~~~~~~~~~a~~~~~~~~~l 698 (868)
+++|.+++++....|+.. .+..+...+...|+++.|...+++++++
T Consensus 319 ~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 319 IHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 788888888765444433 5556666677777777777777777654
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.00 E-value=4.4e-08 Score=105.84 Aligned_cols=261 Identities=13% Similarity=0.037 Sum_probs=162.6
Q ss_pred HHHHHhcCCHHHHHHHHHhcccCCCCCCCe-----eehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHH
Q 047992 436 ISGYIQNGNEDEAVDLFQRMGKNDKVKRNT-----ASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPAC 510 (868)
Q Consensus 436 i~~~~~~g~~~~A~~~f~~m~~~~~~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 510 (868)
...+...|++++|...+++..... +++. ..++.+...+...|++++|...+++.....-
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-------------- 84 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEEL--PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMAR-------------- 84 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTC--CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcC--CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH--------------
Confidence 344556677777777777655432 1111 1334445555666666666666665442100
Q ss_pred hchhchHHHHHHHHHHHHhCCC-CChhHHHHHHHHHHhcCCHHHHHHHHhcCCC-------C----CceecHHHHHHHHh
Q 047992 511 AYLVASNKVKEIHGCVLRRSLE-SSLPVMNSLIDTYAKSGNIVYSRTIFDGMSS-------K----DIITWNSLICGYVL 578 (868)
Q Consensus 511 ~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~-------~----d~~~~~~li~~~~~ 578 (868)
+.+.. ........+...|...|++++|...+++... + ....++.+...|..
T Consensus 85 -----------------~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 147 (373)
T 1hz4_A 85 -----------------QHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWA 147 (373)
T ss_dssp -----------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHH
T ss_pred -----------------hcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHH
Confidence 00000 0112345667777888888888877775431 1 12345667777888
Q ss_pred cCChHHHHHHHHHHHHCCCC--C-C-HHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHH-----HHHHhhhh
Q 047992 579 HGFWHAALDLFDQMKSFGLK--P-N-RGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYS-----AMIDLYGR 649 (868)
Q Consensus 579 ~g~~~~A~~l~~~m~~~g~~--p-~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~-----~lvd~l~r 649 (868)
.|++++|...+++....... | . ..++..+...+...|++++|..+++.......-......+. ..+.++.+
T Consensus 148 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (373)
T 1hz4_A 148 WARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQM 227 (373)
T ss_dssp TTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHH
Confidence 88888888888888763221 1 1 23556666677888999999988887765322211111121 23345778
Q ss_pred cCChHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC------chhHHHHHHHHhhcC
Q 047992 650 SGKLEEAMEFIEDM-PIEPD-----SSIWEALLTACRIHGNIDLAVLAIERLFDLEPGD------VLIQRLILQIYAICG 717 (868)
Q Consensus 650 ~g~~~eA~~~i~~~-~~~p~-----~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~------~~~~~~l~~~y~~~g 717 (868)
.|++++|...+++. ...|. ...+..+...+...|+.+.|...++++++..+.. ...+..++.+|...|
T Consensus 228 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g 307 (373)
T 1hz4_A 228 TGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAG 307 (373)
T ss_dssp TTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhC
Confidence 89999999999887 22221 2356677777888899999999999988765432 236778899999999
Q ss_pred CChhHHHHHHHH
Q 047992 718 KPEDALKVRKLE 729 (868)
Q Consensus 718 ~~~~a~~~~~~m 729 (868)
++++|....+..
T Consensus 308 ~~~~A~~~l~~a 319 (373)
T 1hz4_A 308 RKSDAQRVLLDA 319 (373)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999998865544
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.9e-09 Score=117.14 Aligned_cols=195 Identities=12% Similarity=0.050 Sum_probs=147.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----CC-----ceecHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCH--
Q 047992 535 LPVMNSLIDTYAKSGNIVYSRTIFDGMSS-----KD-----IITWNSLICGYVLHGFWHAALDLFDQMKSFGL-KPNR-- 601 (868)
Q Consensus 535 ~~~~~~Li~~y~k~g~~~~A~~~f~~~~~-----~d-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~-- 601 (868)
..++..+...|...|+++.|...|++... ++ ..+++.+...|...|++++|++.|++..+... .+|.
T Consensus 143 a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 222 (383)
T 3ulq_A 143 AEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQL 222 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHH
Confidence 34677788899999999988888876531 11 34788899999999999999999999876211 1222
Q ss_pred --HHHHHHHHHhhccCChHHHHHHHHHhhhhc---CCCC-ChhHHHHHHHhhhhcCChHHHHHHHHhC-C---C--CCCH
Q 047992 602 --GTFLSIILAHSLAGMVDLGKKVFCSITECY---QIIP-MIEHYSAMIDLYGRSGKLEEAMEFIEDM-P---I--EPDS 669 (868)
Q Consensus 602 --~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p-~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~---~--~p~~ 669 (868)
.++..+...+...|+.++|..+|+...+.. +..| ....+..+..++.+.|++++|.+.+++. . . .|..
T Consensus 223 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 302 (383)
T 3ulq_A 223 MGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIY 302 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 477788889999999999999999876622 2313 3556888999999999999999999886 1 1 2222
Q ss_pred H-HHHHHHHHHHhcCC---HHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHH
Q 047992 670 S-IWEALLTACRIHGN---IDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLER 730 (868)
Q Consensus 670 ~-~w~~ll~a~~~~~~---~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 730 (868)
. .+..|...+...|+ ++.|...+++. ...|.....+..|+.+|...|++++|.+..+...
T Consensus 303 ~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 303 LSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp HHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 2 34556666777788 77777777776 4555666788999999999999999999766553
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.5e-09 Score=126.30 Aligned_cols=163 Identities=14% Similarity=0.156 Sum_probs=144.7
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHH
Q 047992 534 SLPVMNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR-GTFLSIIL 609 (868)
Q Consensus 534 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~ 609 (868)
+...++.|...|.+.|++++|.+.|++.. +.+..+|+.+...|.+.|++++|++.|++.++ +.|+. ..+..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 56788999999999999999999999764 56778999999999999999999999999999 77865 78889999
Q ss_pred HhhccCChHHHHHHHHHhhhhcCCCCC-hhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHH
Q 047992 610 AHSLAGMVDLGKKVFCSITECYQIIPM-IEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPD-SSIWEALLTACRIHGNID 686 (868)
Q Consensus 610 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~-~~~w~~ll~a~~~~~~~~ 686 (868)
++...|+.++|++.|+...+ +.|+ .+.|..+..+|.+.|++++|++.+++. ...|+ ...|..|..++...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~---l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQ---INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 99999999999999999887 3454 668999999999999999999999987 55665 558999999999999999
Q ss_pred HHHHHHHHHhccCCC
Q 047992 687 LAVLAIERLFDLEPG 701 (868)
Q Consensus 687 ~a~~~~~~~~~l~p~ 701 (868)
.|++.+++++++.|+
T Consensus 163 ~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 163 DYDERMKKLVSIVAD 177 (723)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChh
Confidence 999999999987664
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=98.95 E-value=7.6e-08 Score=103.95 Aligned_cols=268 Identities=11% Similarity=-0.031 Sum_probs=161.1
Q ss_pred HHHHhcCChhHHHHHHHHhHhCCCCCCee----ehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCC----eeehhhhHH
Q 047992 402 AGYCQAGYCGKAYELFIKMQESDVPPNVI----TWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRN----TASWNSLIA 473 (868)
Q Consensus 402 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~----~~~~~~li~ 473 (868)
..+...|++++|...+++........+.. +++.+...|...|++++|...+++......-..+ ..++..+..
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 34455667777777776665543111111 3455556677778888888877776432111111 122445666
Q ss_pred HHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCC--C-ChhHHHHHHHHHHhcCC
Q 047992 474 GYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLE--S-SLPVMNSLIDTYAKSGN 550 (868)
Q Consensus 474 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~--~-~~~~~~~Li~~y~k~g~ 550 (868)
.+...|++++|...+++..... .+.+.. + ....+..+...|...|+
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~-------------------------------~~~~~~~~~~~~~~~~~la~~~~~~g~ 150 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLI-------------------------------NEQHLEQLPMHEFLVRIRAQLLWAWAR 150 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH-------------------------------HHTTCTTSTHHHHHHHHHHHHHHHTTC
T ss_pred HHHHCCCHHHHHHHHHHHHHHH-------------------------------HHhccccCcHHHHHHHHHHHHHHHhcC
Confidence 6777778877777777654310 000111 1 22345556777778888
Q ss_pred HHHHHHHHhcCCC--C------CceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHH-----HHHHHhhccCC
Q 047992 551 IVYSRTIFDGMSS--K------DIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR-GTFL-----SIILAHSLAGM 616 (868)
Q Consensus 551 ~~~A~~~f~~~~~--~------d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~-----~ll~a~~~~g~ 616 (868)
+++|...+++... + ...+|..+...+...|++++|+..+++.....-.++. ..+. ..+..+...|+
T Consensus 151 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 230 (373)
T 1hz4_A 151 LDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGD 230 (373)
T ss_dssp HHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCC
Confidence 8888887775421 1 1235666777788888888888888887653222221 1222 22234667888
Q ss_pred hHHHHHHHHHhhhhcCCCCC--hhHHHHHHHhhhhcCChHHHHHHHHhC-------CCCCCHH-HHHHHHHHHHhcCCHH
Q 047992 617 VDLGKKVFCSITECYQIIPM--IEHYSAMIDLYGRSGKLEEAMEFIEDM-------PIEPDSS-IWEALLTACRIHGNID 686 (868)
Q Consensus 617 ~~~a~~~~~~m~~~~~~~p~--~~~y~~lvd~l~r~g~~~eA~~~i~~~-------~~~p~~~-~w~~ll~a~~~~~~~~ 686 (868)
.++|..+++.......-.+. ...+..+..++...|++++|.+.+++. +..++.. ++..+..++...|+.+
T Consensus 231 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 310 (373)
T 1hz4_A 231 KAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKS 310 (373)
T ss_dssp HHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHH
Confidence 88888888877652211111 224566778888889999988888765 1111222 5555666778889999
Q ss_pred HHHHHHHHHhccCC
Q 047992 687 LAVLAIERLFDLEP 700 (868)
Q Consensus 687 ~a~~~~~~~~~l~p 700 (868)
.|...+++++++.+
T Consensus 311 ~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 311 DAQRVLLDALKLAN 324 (373)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999887765
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.94 E-value=3.4e-09 Score=109.14 Aligned_cols=218 Identities=15% Similarity=0.136 Sum_probs=146.8
Q ss_pred hhchHHHHHHHHHHHHh-------CCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----------CCceecHHHHH
Q 047992 513 LVASNKVKEIHGCVLRR-------SLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMSS-----------KDIITWNSLIC 574 (868)
Q Consensus 513 ~~~~~~~~~i~~~~~~~-------~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~-----------~d~~~~~~li~ 574 (868)
.|+.+.|...+...++. ..+....++..+...|...|++++|...|++... ....+|+.+..
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 93 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAV 93 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 45555555555555441 2223566788899999999999999998886541 13457888889
Q ss_pred HHHhcCChHHHHHHHHHHHHC------CCCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhhhc-----CCCC-ChhHHH
Q 047992 575 GYVLHGFWHAALDLFDQMKSF------GLKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITECY-----QIIP-MIEHYS 641 (868)
Q Consensus 575 ~~~~~g~~~~A~~l~~~m~~~------g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-----~~~p-~~~~y~ 641 (868)
.|...|++++|++.|++.... .-.|+. .++..+...+...|++++|..+|+...+.. +..| ....+.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 173 (283)
T 3edt_B 94 LYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKN 173 (283)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 999999999999999998763 113433 567777788889999999999999887641 1122 245677
Q ss_pred HHHHhhhhcCChHHHHHHHHhC-C---------CCCCH-HHHHHHHHHHHhcC------CHHHHHHHHHHHhccCCCCch
Q 047992 642 AMIDLYGRSGKLEEAMEFIEDM-P---------IEPDS-SIWEALLTACRIHG------NIDLAVLAIERLFDLEPGDVL 704 (868)
Q Consensus 642 ~lvd~l~r~g~~~eA~~~i~~~-~---------~~p~~-~~w~~ll~a~~~~~------~~~~a~~~~~~~~~l~p~~~~ 704 (868)
.+..++.+.|++++|.++++++ . ..|.. ..|..+.......+ .+..+...++.+....|..+.
T Consensus 174 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (283)
T 3edt_B 174 NLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNT 253 (283)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 8888899999999999888776 1 12222 24444444333322 244444444444445577778
Q ss_pred hHHHHHHHHhhcCCChhHHHHHHHHH
Q 047992 705 IQRLILQIYAICGKPEDALKVRKLER 730 (868)
Q Consensus 705 ~~~~l~~~y~~~g~~~~a~~~~~~m~ 730 (868)
.+..|+.+|...|++++|.+..+...
T Consensus 254 ~~~~la~~~~~~g~~~~A~~~~~~al 279 (283)
T 3edt_B 254 TLRSLGALYRRQGKLEAAHTLEDCAS 279 (283)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 89999999999999999999877553
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=7.2e-10 Score=102.33 Aligned_cols=111 Identities=18% Similarity=0.134 Sum_probs=73.8
Q ss_pred HHHHHHhhccCChHHHHHHHHHhhhhcCCCC-ChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHh
Q 047992 605 LSIILAHSLAGMVDLGKKVFCSITECYQIIP-MIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPD-SSIWEALLTACRI 681 (868)
Q Consensus 605 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~-~~~w~~ll~a~~~ 681 (868)
..+...+...|++++|+.+|+...+. .| +...|..+..+|.+.|++++|++.+++. ...|+ ..+|..+...+..
T Consensus 35 ~~la~~y~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 111 (150)
T 4ga2_A 35 FYFAKLYYEAKEYDLAKKYICTYINV---QERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCK 111 (150)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 33444444444444444444444331 22 2344556666666677777777776665 34454 5588888888888
Q ss_pred cCCHHHHHHH-HHHHhccCCCCchhHHHHHHHHhhcCC
Q 047992 682 HGNIDLAVLA-IERLFDLEPGDVLIQRLILQIYAICGK 718 (868)
Q Consensus 682 ~~~~~~a~~~-~~~~~~l~p~~~~~~~~l~~~y~~~g~ 718 (868)
.|+.+.|.+. ++++++++|+++.+|.+++.++...|+
T Consensus 112 ~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 112 NDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred cCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 8988766554 699999999999999999999988885
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.90 E-value=1.8e-08 Score=102.71 Aligned_cols=186 Identities=14% Similarity=0.063 Sum_probs=137.7
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-C---ceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HH
Q 047992 534 SLPVMNSLIDTYAKSGNIVYSRTIFDGMSS--K-D---IITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR----GT 603 (868)
Q Consensus 534 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~-d---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t 603 (868)
+...+..+...|.+.|++++|...|+++.. | + ...|..+...|...|++++|++.|++.++ ..|+. ..
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a 91 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQ--IYQIDPRVPQA 91 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHH--HCCCCchhHHH
Confidence 556666777888889999999999987753 2 3 45677888888999999999999999988 34432 34
Q ss_pred HHHHHHHhhc--------cCChHHHHHHHHHhhhhcCCCCChhH-H--------------HHHHHhhhhcCChHHHHHHH
Q 047992 604 FLSIILAHSL--------AGMVDLGKKVFCSITECYQIIPMIEH-Y--------------SAMIDLYGRSGKLEEAMEFI 660 (868)
Q Consensus 604 ~~~ll~a~~~--------~g~~~~a~~~~~~m~~~~~~~p~~~~-y--------------~~lvd~l~r~g~~~eA~~~i 660 (868)
+..+..++.. .|+.++|+..|+...+.++-.|.... . ..+..+|.+.|++++|.+.+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 171 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY 171 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 5555666666 89999999999988886655444321 1 45688899999999999999
Q ss_pred HhC----CCCCC-HHHHHHHHHHHHhc----------CCHHHHHHHHHHHhccCCCCch---hHHHHHHHHhhcCCChh
Q 047992 661 EDM----PIEPD-SSIWEALLTACRIH----------GNIDLAVLAIERLFDLEPGDVL---IQRLILQIYAICGKPED 721 (868)
Q Consensus 661 ~~~----~~~p~-~~~w~~ll~a~~~~----------~~~~~a~~~~~~~~~l~p~~~~---~~~~l~~~y~~~g~~~~ 721 (868)
+++ |-.|. ...|..+..++... |+++.|...++++++..|+++. ++..|..++...|+.++
T Consensus 172 ~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 172 EAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhh
Confidence 887 43332 33677777777655 8999999999999999999864 45566666655555443
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.87 E-value=2.3e-08 Score=103.85 Aligned_cols=169 Identities=9% Similarity=0.034 Sum_probs=113.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCCC-----CC----ceecHHHHHHHHhc-CChHHHHHHHHHHHHCCCCCC-----
Q 047992 536 PVMNSLIDTYAKSGNIVYSRTIFDGMSS-----KD----IITWNSLICGYVLH-GFWHAALDLFDQMKSFGLKPN----- 600 (868)
Q Consensus 536 ~~~~~Li~~y~k~g~~~~A~~~f~~~~~-----~d----~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~----- 600 (868)
.+++.+..+|.+.|++++|...|++... .+ ..+|+.+...|... |++++|++.|++.++ +.|+
T Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~--~~~~~~~~~ 155 (292)
T 1qqe_A 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGE--WYAQDQSVA 155 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HHHHTTCHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH--HHHhCCChH
Confidence 4566777778888888888777775432 11 34677788888886 888888888888876 3332
Q ss_pred --HHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCCh-----hHHHHHHHhhhhcCChHHHHHHHHhC-CCCCCHH--
Q 047992 601 --RGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMI-----EHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPDSS-- 670 (868)
Q Consensus 601 --~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-----~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~~~-- 670 (868)
..++..+...+...|++++|+.+|+...+...-.+.. ..|..++.++...|++++|...+++. .+.|+..
T Consensus 156 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 235 (292)
T 1qqe_A 156 LSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS 235 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 2456677778888888888888888877643322222 14666777788888888888888887 4445422
Q ss_pred ----HHHHHHHHHH--hcCCHHHHHHHHHHHhccCCCCchhH
Q 047992 671 ----IWEALLTACR--IHGNIDLAVLAIERLFDLEPGDVLIQ 706 (868)
Q Consensus 671 ----~w~~ll~a~~--~~~~~~~a~~~~~~~~~l~p~~~~~~ 706 (868)
.+..|+.++. ..++++.|...++++++++|.+....
T Consensus 236 ~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~ 277 (292)
T 1qqe_A 236 RESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITIL 277 (292)
T ss_dssp --HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHH
Confidence 3444555554 34568888888888888888654433
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.86 E-value=3.6e-08 Score=97.99 Aligned_cols=182 Identities=15% Similarity=0.064 Sum_probs=117.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CC----ceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH----HH
Q 047992 535 LPVMNSLIDTYAKSGNIVYSRTIFDGMSS--KD----IITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRG----TF 604 (868)
Q Consensus 535 ~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~d----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~ 604 (868)
...+..+...|.+.|++++|...|+++.. |+ ...+..+..+|...|++++|++.|++..+ ..|+.. .+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~--~~P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR--LNPTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCCcHHHHH
Confidence 44555667778888888888888887652 22 23567777888888888888888888887 455542 23
Q ss_pred HHHHHHhhc------------------cCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhCCCC
Q 047992 605 LSIILAHSL------------------AGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPIE 666 (868)
Q Consensus 605 ~~ll~a~~~------------------~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~~~~ 666 (868)
..+..++.. .|+.++|...|+.+.+.++-.|... .. +.+.+.+.+...
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~--~a----~~~l~~~~~~~~-------- 147 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTT--DA----TKRLVFLKDRLA-------- 147 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHH--HH----HHHHHHHHHHHH--------
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHH--HH----HHHHHHHHHHHH--------
Confidence 333333322 3455555555555554333222211 00 000000000000
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc---hhHHHHHHHHhhcCCChhHHHHHHHHHhcCCC
Q 047992 667 PDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDV---LIQRLILQIYAICGKPEDALKVRKLERENTRR 735 (868)
Q Consensus 667 p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~---~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 735 (868)
.....+...+...|+++.|...++++++..|+++ .++..++.+|...|++++|.+..+.+...+..
T Consensus 148 ---~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 148 ---KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp ---HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred ---HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 0112345567789999999999999999999986 56899999999999999999999988876644
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.83 E-value=6.1e-09 Score=121.81 Aligned_cols=167 Identities=14% Similarity=0.010 Sum_probs=108.1
Q ss_pred HhcCCHHHHHHHHhcCC-----------CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhc
Q 047992 546 AKSGNIVYSRTIFDGMS-----------SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR-GTFLSIILAHSL 613 (868)
Q Consensus 546 ~k~g~~~~A~~~f~~~~-----------~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~ 613 (868)
...|+.++|.+.|++.. +.+...|..+...|.+.|++++|++.|++..+ ..|+. ..+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAE--RVGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhc--cCcchHHHHHHHHHHHHH
Confidence 45566666666666543 33455666666667777777777777777766 44543 455556666667
Q ss_pred cCChHHHHHHHHHhhhhcCCCC-ChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 047992 614 AGMVDLGKKVFCSITECYQIIP-MIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVL 690 (868)
Q Consensus 614 ~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~ 690 (868)
.|++++|...|+...+. .| +...|..+..+|.+.|++++ ++.++++ ...| +...|..+..++...|+++.|..
T Consensus 480 ~g~~~~A~~~~~~al~l---~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDT---FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 77777777777766652 23 34456666777777777777 7666665 3344 34477777777777777777777
Q ss_pred HHHHHhccCCCCchhHHHHHHHHhhcCC
Q 047992 691 AIERLFDLEPGDVLIQRLILQIYAICGK 718 (868)
Q Consensus 691 ~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 718 (868)
.++++++++|+++.+|..++.+|...|+
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 7777777777777777777777766665
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.82 E-value=2.2e-08 Score=104.04 Aligned_cols=184 Identities=9% Similarity=-0.044 Sum_probs=134.3
Q ss_pred HHHHHhcCCHHHHHHHHhcCCC-----CC----ceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-------HHHHH
Q 047992 542 IDTYAKSGNIVYSRTIFDGMSS-----KD----IITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPN-------RGTFL 605 (868)
Q Consensus 542 i~~y~k~g~~~~A~~~f~~~~~-----~d----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-------~~t~~ 605 (868)
+..|...|++++|...|++... .+ ..+|+.+...|...|++++|+..|++.++ +.|+ ..++.
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~--l~~~~g~~~~~a~~~~ 121 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQ--IFTHRGQFRRGANFKF 121 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHTTCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HHHHcCCHHHHHHHHH
Confidence 4578889999999988886532 12 45889999999999999999999999876 2221 24677
Q ss_pred HHHHHhhcc-CChHHHHHHHHHhhhhcCCCCC----hhHHHHHHHhhhhcCChHHHHHHHHhC-CCCC---CH-----HH
Q 047992 606 SIILAHSLA-GMVDLGKKVFCSITECYQIIPM----IEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP---DS-----SI 671 (868)
Q Consensus 606 ~ll~a~~~~-g~~~~a~~~~~~m~~~~~~~p~----~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p---~~-----~~ 671 (868)
.+..++... |++++|+.+|+...+.+.-..+ ...|..+..+|.+.|++++|.+.+++. ...| +. ..
T Consensus 122 ~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 201 (292)
T 1qqe_A 122 ELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDY 201 (292)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHH
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 888889886 9999999999988764322111 346788899999999999999999987 2222 21 15
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchh-----HHHHHHHHh--hcCCChhHHHHHH
Q 047992 672 WEALLTACRIHGNIDLAVLAIERLFDLEPGDVLI-----QRLILQIYA--ICGKPEDALKVRK 727 (868)
Q Consensus 672 w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~-----~~~l~~~y~--~~g~~~~a~~~~~ 727 (868)
|..+..++...|+++.|...++++++++|+.... +..|...|. ..+++++|.+..+
T Consensus 202 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~ 264 (292)
T 1qqe_A 202 FLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFD 264 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhc
Confidence 6677777888999999999999999999987654 334555554 4566777776653
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=3.2e-08 Score=102.39 Aligned_cols=160 Identities=9% Similarity=-0.021 Sum_probs=122.0
Q ss_pred CCCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHH
Q 047992 562 SSKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHY 640 (868)
Q Consensus 562 ~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y 640 (868)
.+.+...+..+...+.+.|++++|++.|++..+ ..|+. ..+..+..++...|+.++|...|+..... .|+....
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~ 187 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQ--LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ---DQDTRYQ 187 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG---GCSHHHH
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh---hcchHHH
Confidence 344445566667777788888888888888877 56654 56667777788888888888888877653 3443322
Q ss_pred HHHH-HhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC--chhHHHHHHHHhh
Q 047992 641 SAMI-DLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGD--VLIQRLILQIYAI 715 (868)
Q Consensus 641 ~~lv-d~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~--~~~~~~l~~~y~~ 715 (868)
.... -.+.+.|+.++|.+.+++. ...| +...|..|..++...|+++.|...++++++.+|++ +.++..|+.+|..
T Consensus 188 ~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~ 267 (287)
T 3qou_A 188 GLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAA 267 (287)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHH
Confidence 2222 2356677788888887776 3344 56689999999999999999999999999999998 8899999999999
Q ss_pred cCCChhHHHHH
Q 047992 716 CGKPEDALKVR 726 (868)
Q Consensus 716 ~g~~~~a~~~~ 726 (868)
.|+.++|....
T Consensus 268 ~g~~~~a~~~~ 278 (287)
T 3qou_A 268 LGTGDALASXY 278 (287)
T ss_dssp HCTTCHHHHHH
T ss_pred cCCCCcHHHHH
Confidence 99999987743
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.80 E-value=4.8e-08 Score=105.81 Aligned_cols=218 Identities=10% Similarity=-0.024 Sum_probs=154.0
Q ss_pred hchhchHHHHHHHHHHHHhC--CCC---ChhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----CC-----ceecHHHHHH
Q 047992 511 AYLVASNKVKEIHGCVLRRS--LES---SLPVMNSLIDTYAKSGNIVYSRTIFDGMSS-----KD-----IITWNSLICG 575 (868)
Q Consensus 511 ~~~~~~~~~~~i~~~~~~~~--~~~---~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~-----~d-----~~~~~~li~~ 575 (868)
...|+.+.|...+..+++.. ... ...++..+...|...|+++.|...+++... ++ ..+++.+...
T Consensus 112 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~ 191 (378)
T 3q15_A 112 FDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGN 191 (378)
T ss_dssp HHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHH
Confidence 34455555555555554421 111 234677788899999999988888876431 12 3478889999
Q ss_pred HHhcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHhhccCChHHHHHHHHHhhhhc---CCCCChhHHHHHHHhh
Q 047992 576 YVLHGFWHAALDLFDQMKSF----GLKPN-RGTFLSIILAHSLAGMVDLGKKVFCSITECY---QIIPMIEHYSAMIDLY 647 (868)
Q Consensus 576 ~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~~~~y~~lvd~l 647 (868)
|...|++++|++.|++..+. |-.+. ..++..+...+...|+.++|..+|+...+.. +.+.....+..+..++
T Consensus 192 y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 271 (378)
T 3q15_A 192 YDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTL 271 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHH
Confidence 99999999999999998762 11111 2466778888999999999999999877622 2222356688889999
Q ss_pred hhcCChHHHHHHHHhC----CC--CCCHH-HHHHHHHHHHhcCC---HHHHHHHHHHHhccCCCCchhHHHHHHHHhhcC
Q 047992 648 GRSGKLEEAMEFIEDM----PI--EPDSS-IWEALLTACRIHGN---IDLAVLAIERLFDLEPGDVLIQRLILQIYAICG 717 (868)
Q Consensus 648 ~r~g~~~eA~~~i~~~----~~--~p~~~-~w~~ll~a~~~~~~---~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g 717 (868)
.+.|++++|.+.+++. +. .|... .+..+...+...++ ++.|...+++ ....|.....+..|+.+|...|
T Consensus 272 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~-~~~~~~~~~~~~~la~~y~~~g 350 (378)
T 3q15_A 272 CKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK-KNLHAYIEACARSAAAVFESSC 350 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHCC
Confidence 9999999999999886 21 23333 44455555666777 7777777776 2344555677889999999999
Q ss_pred CChhHHHHHHHH
Q 047992 718 KPEDALKVRKLE 729 (868)
Q Consensus 718 ~~~~a~~~~~~m 729 (868)
++++|.+..+..
T Consensus 351 ~~~~A~~~~~~a 362 (378)
T 3q15_A 351 HFEQAAAFYRKV 362 (378)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999999976554
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.79 E-value=9.6e-08 Score=98.13 Aligned_cols=166 Identities=12% Similarity=0.012 Sum_probs=108.3
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----------CCceecHHHHHHHHhcCChHHHHHHHHHHHHC------C
Q 047992 534 SLPVMNSLIDTYAKSGNIVYSRTIFDGMSS-----------KDIITWNSLICGYVLHGFWHAALDLFDQMKSF------G 596 (868)
Q Consensus 534 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~-----------~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g 596 (868)
...++..+...|...|++++|.+.|++... ....+|..+...|...|++++|++.|+++.+. +
T Consensus 84 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 163 (283)
T 3edt_B 84 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGP 163 (283)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Confidence 345677788888888888888888876531 12457788888888999999999999888773 1
Q ss_pred CCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhhhc------CCCCC-hhHHHHHHHhhh------hcCChHHHHHHHHh
Q 047992 597 LKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITECY------QIIPM-IEHYSAMIDLYG------RSGKLEEAMEFIED 662 (868)
Q Consensus 597 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~------~~~p~-~~~y~~lvd~l~------r~g~~~eA~~~i~~ 662 (868)
-.|+. .++..+..++...|+.++|..+|+...+.. ...|. ...+..+..... ....+.++...++.
T Consensus 164 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (283)
T 3edt_B 164 DDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKA 243 (283)
T ss_dssp TCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------C
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHh
Confidence 14433 567778888889999999999998876631 11222 222333333322 23446666666666
Q ss_pred CC-CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhccC
Q 047992 663 MP-IEPDS-SIWEALLTACRIHGNIDLAVLAIERLFDLE 699 (868)
Q Consensus 663 ~~-~~p~~-~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~ 699 (868)
.. ..|+. .+|..|...+...|+++.|...+++++++.
T Consensus 244 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 244 CKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 63 33433 378888899999999999999999998764
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.79 E-value=6.2e-08 Score=98.75 Aligned_cols=168 Identities=12% Similarity=0.039 Sum_probs=136.4
Q ss_pred CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCC-h
Q 047992 563 SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPN----RGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPM-I 637 (868)
Q Consensus 563 ~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~ 637 (868)
+.+...+..+...+...|++++|++.|+++++ ..|+ ...+..+..++...|++++|...|+...+.++-.|. .
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 89 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFT--YGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP 89 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGG--GCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence 45566777788889999999999999999998 4565 356777888899999999999999999987665554 4
Q ss_pred hHHHHHHHhhhh--------cCChHHHHHHHHhC-CCCCCH-HHH-----------------HHHHHHHHhcCCHHHHHH
Q 047992 638 EHYSAMIDLYGR--------SGKLEEAMEFIEDM-PIEPDS-SIW-----------------EALLTACRIHGNIDLAVL 690 (868)
Q Consensus 638 ~~y~~lvd~l~r--------~g~~~eA~~~i~~~-~~~p~~-~~w-----------------~~ll~a~~~~~~~~~a~~ 690 (868)
..+..+..++.+ .|++++|.+.+++. ...|+. ..+ ..+...+...|+++.|..
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 169 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAV 169 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 567778888888 99999999999887 223332 233 455777889999999999
Q ss_pred HHHHHhccCCCCc---hhHHHHHHHHhhc----------CCChhHHHHHHHHHhc
Q 047992 691 AIERLFDLEPGDV---LIQRLILQIYAIC----------GKPEDALKVRKLEREN 732 (868)
Q Consensus 691 ~~~~~~~l~p~~~---~~~~~l~~~y~~~----------g~~~~a~~~~~~m~~~ 732 (868)
.++++++..|+++ .++..++.+|... |++++|....+...+.
T Consensus 170 ~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 170 TYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 9999999999854 5889999999977 8999999988776543
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.78 E-value=6e-07 Score=91.42 Aligned_cols=78 Identities=14% Similarity=0.023 Sum_probs=38.6
Q ss_pred ChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc----------CCCCchhHHHHHHHHhhcCCCh
Q 047992 652 KLEEAMEFIEDM-PIEPDSSIWEALLTACRIHGNIDLAVLAIERLFDL----------EPGDVLIQRLILQIYAICGKPE 720 (868)
Q Consensus 652 ~~~eA~~~i~~~-~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l----------~p~~~~~~~~l~~~y~~~g~~~ 720 (868)
++++|..+|+++ ...|+...-..|++++...|+++.|+..++.++++ +|+|+.++..+..++...|+
T Consensus 193 ~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk-- 270 (310)
T 3mv2_B 193 TATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL-- 270 (310)
T ss_dssp TTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--
T ss_pred cHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--
Confidence 555555555554 22233111122333445556666666666655554 35555555555555555554
Q ss_pred hHHHHHHHHHh
Q 047992 721 DALKVRKLERE 731 (868)
Q Consensus 721 ~a~~~~~~m~~ 731 (868)
+|.+++..+++
T Consensus 271 ~a~~l~~qL~~ 281 (310)
T 3mv2_B 271 DTEDLTNQLVK 281 (310)
T ss_dssp TTHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555543
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.76 E-value=1.1e-07 Score=84.99 Aligned_cols=126 Identities=17% Similarity=0.237 Sum_probs=68.9
Q ss_pred ecHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHh
Q 047992 568 TWNSLICGYVLHGFWHAALDLFDQMKSFGLKP-NRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDL 646 (868)
Q Consensus 568 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~ 646 (868)
.|..+...|...|++++|+++|+++.+. .| +...+..+...+...|++++|..+|+.+.+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------------- 65 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------------- 65 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---------------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC---------------
Confidence 3555666666777777777777776653 23 23444444555555555555555555544321
Q ss_pred hhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHH
Q 047992 647 YGRSGKLEEAMEFIEDMPIEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVR 726 (868)
Q Consensus 647 l~r~g~~~eA~~~i~~~~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 726 (868)
+.+..+|..+...+...|+++.|...++++++..|+++..+..++.+|...|++++|.+..
T Consensus 66 -------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 126 (136)
T 2fo7_A 66 -------------------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 126 (136)
T ss_dssp -------------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred -------------------CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHH
Confidence 1223344445555555555555555555555555555555555555555555555555554
Q ss_pred HHH
Q 047992 727 KLE 729 (868)
Q Consensus 727 ~~m 729 (868)
+.+
T Consensus 127 ~~~ 129 (136)
T 2fo7_A 127 QKA 129 (136)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.74 E-value=9.8e-08 Score=85.32 Aligned_cols=95 Identities=18% Similarity=0.275 Sum_probs=81.5
Q ss_pred HHHHHHHhhhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhc
Q 047992 639 HYSAMIDLYGRSGKLEEAMEFIEDM-PI-EPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAIC 716 (868)
Q Consensus 639 ~y~~lvd~l~r~g~~~eA~~~i~~~-~~-~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 716 (868)
.|..++..+.+.|++++|.++++++ .. +.+..+|..+...+...|+++.|...++++++..|+++..+..++.+|...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 4566778888888999998888876 22 235668888888899999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHhcC
Q 047992 717 GKPEDALKVRKLERENT 733 (868)
Q Consensus 717 g~~~~a~~~~~~m~~~~ 733 (868)
|++++|.+..+.+.+..
T Consensus 83 ~~~~~A~~~~~~~~~~~ 99 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELD 99 (136)
T ss_dssp TCHHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHHhC
Confidence 99999999888776554
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.73 E-value=6.8e-08 Score=91.73 Aligned_cols=74 Identities=11% Similarity=0.144 Sum_probs=60.7
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC--chhHHHHHHHHhhcCCChhHHHHHHH
Q 047992 655 EAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGD--VLIQRLILQIYAICGKPEDALKVRKL 728 (868)
Q Consensus 655 eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~--~~~~~~l~~~y~~~g~~~~a~~~~~~ 728 (868)
+|.+.+++. ...| +...|..+..++...|+++.|...++++++++|+. +.++..|+.+|...|+.++|....+.
T Consensus 92 ~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~ 169 (176)
T 2r5s_A 92 PELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRR 169 (176)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred hHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 355555554 3345 46688899999999999999999999999999975 56999999999999999999886553
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.69 E-value=2.6e-07 Score=107.99 Aligned_cols=194 Identities=12% Similarity=0.073 Sum_probs=149.5
Q ss_pred hchhchHHHHHHHHHHHH------hCC-CCChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcC
Q 047992 511 AYLVASNKVKEIHGCVLR------RSL-ESSLPVMNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHG 580 (868)
Q Consensus 511 ~~~~~~~~~~~i~~~~~~------~~~-~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g 580 (868)
...++.+++.+.+..+++ ... +.+...+..+...|.+.|++++|.+.|++.. +.+...|+.+...|...|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g 481 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG 481 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence 455666666666666651 013 3366788889999999999999999999765 457788999999999999
Q ss_pred ChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCC-ChhHHHHHHHhhhhcCChHHHHH
Q 047992 581 FWHAALDLFDQMKSFGLKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIP-MIEHYSAMIDLYGRSGKLEEAME 658 (868)
Q Consensus 581 ~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lvd~l~r~g~~~eA~~ 658 (868)
++++|++.|++.++ +.|+. ..+..+..++...|++++ ...|+...+. .| +...|..+..+|.+.|++++|.+
T Consensus 482 ~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 482 DYDSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE-HKFYQTVWST---NDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp CHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh---CCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999998 67865 778888889999999999 9999998873 34 45678889999999999999999
Q ss_pred HHHhC-CCCCCHH-HHHHHHHHHHhcCC-----HHHHHHHHHHHhccCCCCchhHHHHH
Q 047992 659 FIEDM-PIEPDSS-IWEALLTACRIHGN-----IDLAVLAIERLFDLEPGDVLIQRLIL 710 (868)
Q Consensus 659 ~i~~~-~~~p~~~-~w~~ll~a~~~~~~-----~~~a~~~~~~~~~l~p~~~~~~~~l~ 710 (868)
.++++ ...|+.. .|..+..++...++ .+...++.+.+.++.|+++..+.+..
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~~~l~~ 614 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRVLQIRA 614 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTHHHHHH
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHHHHHHH
Confidence 99998 5778755 77777777655554 46666666777777776666554443
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=2e-08 Score=92.54 Aligned_cols=114 Identities=14% Similarity=0.031 Sum_probs=95.2
Q ss_pred HHhhccCChHHHHHHHHHhhhhcCCCCC-hhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCH
Q 047992 609 LAHSLAGMVDLGKKVFCSITECYQIIPM-IEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPD-SSIWEALLTACRIHGNI 685 (868)
Q Consensus 609 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~-~~~w~~ll~a~~~~~~~ 685 (868)
..+...|++++|+..+..... ..|+ ...+..+..+|.+.|++++|++.+++. ...|+ ..+|..+...+...|++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence 345567888888888887654 3332 334567889999999999999999988 55564 56999999999999999
Q ss_pred HHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHH
Q 047992 686 DLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKV 725 (868)
Q Consensus 686 ~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~ 725 (868)
+.|...++++++++|+++.+|..|+.+|...|++++|.+.
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~ 121 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKY 121 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH
Confidence 9999999999999999999999999999999999988764
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.63 E-value=5.2e-07 Score=91.85 Aligned_cols=181 Identities=13% Similarity=0.062 Sum_probs=131.7
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----CCceecHHHHHHHHhcCChHHHHHHHHHHHH
Q 047992 520 KEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMSS-----KDIITWNSLICGYVLHGFWHAALDLFDQMKS 594 (868)
Q Consensus 520 ~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~-----~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 594 (868)
...+..++..+ .++......+...|...|++++|.+++.+... .+...+-.++..|.+.|+.+.|.+.+++|.+
T Consensus 86 ~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 86 IEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 33344444333 34455556888999999999999999997632 3455777788999999999999999999988
Q ss_pred CCCCC-----CHHHHHHHHHH--hhccC--ChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-C
Q 047992 595 FGLKP-----NRGTFLSIILA--HSLAG--MVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-P 664 (868)
Q Consensus 595 ~g~~p-----~~~t~~~ll~a--~~~~g--~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~ 664 (868)
..| +..+...+..+ ....| ...+|..+|+.+.+.+ |+......+..++.+.|+++||++.++.+ .
T Consensus 165 --~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~---p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 165 --AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF---PTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp --HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS---CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred --cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC---CCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 678 36666667666 33334 8999999999998754 33222223334788999999999999865 2
Q ss_pred C----------CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHH
Q 047992 665 I----------EPDS-SIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRL 708 (868)
Q Consensus 665 ~----------~p~~-~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~ 708 (868)
. .|+. .+...++......|+ .|.+..+++.++.|+++-...+
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~ 292 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHH 292 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHH
Confidence 1 2544 466566666666787 8899999999999999865544
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=2.1e-07 Score=106.87 Aligned_cols=159 Identities=11% Similarity=0.002 Sum_probs=121.0
Q ss_pred cCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCChHHHHHH
Q 047992 548 SGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPN-RGTFLSIILAHSLAGMVDLGKKV 623 (868)
Q Consensus 548 ~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~ 623 (868)
.|++++|.+.|++.. +.+...|..+...|...|++++|++.|++..+ ..|+ ...+..+..++...|+.++|..+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA--LHPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 367888888888765 34567888888999999999999999999988 5665 46777888888999999999999
Q ss_pred HHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CCHHHHHHHHHHHhcc
Q 047992 624 FCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIH---GNIDLAVLAIERLFDL 698 (868)
Q Consensus 624 ~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~---~~~~~a~~~~~~~~~l 698 (868)
|+...+.. ..+...+..+..+|.+.|++++|.+.+++. ...| +..+|..+..++... |+.+.|...++++++.
T Consensus 80 ~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA--PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99887742 223567888999999999999999999987 3444 466888899999999 9999999999999999
Q ss_pred CCCCchhHHHHH
Q 047992 699 EPGDVLIQRLIL 710 (868)
Q Consensus 699 ~p~~~~~~~~l~ 710 (868)
+|++...|.+|+
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 999999888877
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.61 E-value=1.3e-07 Score=84.01 Aligned_cols=108 Identities=7% Similarity=-0.064 Sum_probs=68.9
Q ss_pred HHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHH
Q 047992 603 TFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPD-SSIWEALLTACR 680 (868)
Q Consensus 603 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~-~~~w~~ll~a~~ 680 (868)
.+......+.+.|++++|+..|+...+.. +.+...|..+..+|.+.|++++|++.+++. .+.|+ ...|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD--PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 33444445555555555555555544421 112344555666666666666666666665 33343 457888888888
Q ss_pred hcCCHHHHHHHHHHHhccCCCCchhHHHHHHH
Q 047992 681 IHGNIDLAVLAIERLFDLEPGDVLIQRLILQI 712 (868)
Q Consensus 681 ~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~ 712 (868)
..|+++.|...++++++++|+|+.++..|+++
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 88888888888888888888888887777765
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=2.1e-07 Score=106.75 Aligned_cols=149 Identities=15% Similarity=0.032 Sum_probs=112.2
Q ss_pred cCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCC-ChhHHHHHHHhhhhcCChHHH
Q 047992 579 HGFWHAALDLFDQMKSFGLKPN-RGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIP-MIEHYSAMIDLYGRSGKLEEA 656 (868)
Q Consensus 579 ~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lvd~l~r~g~~~eA 656 (868)
.|+.++|++.|++..+ ..|+ ...+..+..++...|++++|..+|+...+ +.| +...|..+..+|.+.|++++|
T Consensus 2 ~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A 76 (568)
T 2vsy_A 2 TADGPRELLQLRAAVR--HRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA---LHPGHPEAVARLGRVRWTQQRHAEA 76 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT---TSTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred CccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 4789999999999988 5675 47788888899999999999999999876 344 466788999999999999999
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhc---CCChhHHHHHHHHHh
Q 047992 657 MEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAIC---GKPEDALKVRKLERE 731 (868)
Q Consensus 657 ~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~---g~~~~a~~~~~~m~~ 731 (868)
.+.+++. ...| +...|..+..++...|+++.|...++++++++|+++.++..++.+|... |++++|.+..+...+
T Consensus 77 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 77 AVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 9999987 4444 4668999999999999999999999999999999999999999999999 888888886655543
Q ss_pred c
Q 047992 732 N 732 (868)
Q Consensus 732 ~ 732 (868)
.
T Consensus 157 ~ 157 (568)
T 2vsy_A 157 Q 157 (568)
T ss_dssp H
T ss_pred c
Confidence 3
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.61 E-value=1.6e-05 Score=88.46 Aligned_cols=204 Identities=13% Similarity=0.035 Sum_probs=125.9
Q ss_pred HHHHHHHhcCC---CCeehHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCeeehhhHHHHHHhcCCHHHHH-HHHHhcc
Q 047992 381 AAERVFDMIKD---KDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNVLISGYIQNGNEDEAV-DLFQRMG 456 (868)
Q Consensus 381 ~A~~vf~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~-~~f~~m~ 456 (868)
.+..+|++... .+...|-..+.-+.+.|+.++|..+|++.... |+...+.. .|+.....++.. .+.+...
T Consensus 197 Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~~~~~l~~~~~ 270 (493)
T 2uy1_A 197 RMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEAVYGDLKRKYS 270 (493)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhHHHHHHHHHHH
Confidence 34556665543 24556777777777888888888888888876 43332211 222221111111 1111110
Q ss_pred cCC-------CCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchh-chHHHHHHHHHHHH
Q 047992 457 KND-------KVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLV-ASNKVKEIHGCVLR 528 (868)
Q Consensus 457 ~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~-~~~~~~~i~~~~~~ 528 (868)
... ........|...+....+.+..+.|..+|.+.... ..+...|......-...+ +.+.|+.+++..++
T Consensus 271 ~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~--~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~ 348 (493)
T 2uy1_A 271 MGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELGNE--GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLL 348 (493)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTS--CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHH
T ss_pred hhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhhCC--CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 000 00111245667777777788899999999988221 123333332111111223 68999999999988
Q ss_pred hCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCceecHHHHHHHHhcCChHHHHHHHHHHHH
Q 047992 529 RSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMSSKDIITWNSLICGYVLHGFWHAALDLFDQMKS 594 (868)
Q Consensus 529 ~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 594 (868)
.. +.++..+...++...+.|+.+.|+.+|+++. +....|...+.--..+|+.+.+.++++++..
T Consensus 349 ~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 349 KH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 63 3456667778898899999999999999984 4566788888777788988888888888764
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.60 E-value=9.6e-08 Score=87.59 Aligned_cols=101 Identities=16% Similarity=0.047 Sum_probs=85.0
Q ss_pred CCCCC-hhHHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHH
Q 047992 632 QIIPM-IEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRL 708 (868)
Q Consensus 632 ~~~p~-~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~ 708 (868)
.+.|+ .+.+..+...+.+.|++++|.+.+++. ...| ++..|..|..++...|+++.|...++++++++|+++.+|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 34443 445667778888899999999999887 4445 56699999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCChhHHHHHHHHHhc
Q 047992 709 ILQIYAICGKPEDALKVRKLEREN 732 (868)
Q Consensus 709 l~~~y~~~g~~~~a~~~~~~m~~~ 732 (868)
++.+|...|++++|.+..+...+.
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999987766543
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.59 E-value=4.9e-07 Score=89.67 Aligned_cols=185 Identities=13% Similarity=0.009 Sum_probs=130.8
Q ss_pred HhHHHHHHHHhchhchHHHHHHHHHHHHhCCCC--ChhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-Cce---ecHHH
Q 047992 501 VTILSVLPACAYLVASNKVKEIHGCVLRRSLES--SLPVMNSLIDTYAKSGNIVYSRTIFDGMSS--K-DII---TWNSL 572 (868)
Q Consensus 501 ~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~-d~~---~~~~l 572 (868)
..+......+...|+++.|...+..+++..... ....+..+...|.+.|++++|...|++... | +.. .|..+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 334445566788999999999999999853321 235778889999999999999999998753 2 222 45555
Q ss_pred HHHHHh------------------cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCC
Q 047992 573 ICGYVL------------------HGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQII 634 (868)
Q Consensus 573 i~~~~~------------------~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 634 (868)
...+.. .|+.++|+..|+++++ ..|+...... +......+...
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~P~~~~a~~-------------a~~~l~~~~~~---- 145 (225)
T 2yhc_A 85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR--GYPNSQYTTD-------------ATKRLVFLKDR---- 145 (225)
T ss_dssp HHHHHHHHC--------------CCHHHHHHHHHHHHHHT--TCTTCTTHHH-------------HHHHHHHHHHH----
T ss_pred HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH--HCcCChhHHH-------------HHHHHHHHHHH----
Confidence 555554 5789999999999998 5677532111 11111111110
Q ss_pred CChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchh
Q 047992 635 PMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPDS----SIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLI 705 (868)
Q Consensus 635 p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~~----~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~ 705 (868)
.......+...|.+.|++++|...++++ ...|+. ..|..+..++...|+.+.|...++++....|++...
T Consensus 146 -~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 146 -LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp -HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred -HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence 0112345678889999999999999887 223332 478888899999999999999999999999987543
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.59 E-value=2e-07 Score=91.16 Aligned_cols=156 Identities=8% Similarity=0.032 Sum_probs=113.6
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCC---CCceecHH----------------HHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 047992 541 LIDTYAKSGNIVYSRTIFDGMSS---KDIITWNS----------------LICGYVLHGFWHAALDLFDQMKSFGLKPNR 601 (868)
Q Consensus 541 Li~~y~k~g~~~~A~~~f~~~~~---~d~~~~~~----------------li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 601 (868)
....+.+.|++++|...|++... .+...|.. +...|...|++++|+..|++.++ +.|+.
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~ 87 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ--KAPNN 87 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCC
Confidence 34455667777777777776542 23445555 88888999999999999999988 66754
Q ss_pred -HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCC-ChhHHHHHHHhhhhcCC--hHHHHHHHHhCCCCCCHH--HHHHH
Q 047992 602 -GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIP-MIEHYSAMIDLYGRSGK--LEEAMEFIEDMPIEPDSS--IWEAL 675 (868)
Q Consensus 602 -~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lvd~l~r~g~--~~eA~~~i~~~~~~p~~~--~w~~l 675 (868)
..+..+..++...|+.++|...|+...+. .| +...|..+..+|...|. .+++...+++.. .|++. .|..+
T Consensus 88 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~ 163 (208)
T 3urz_A 88 VDCLEACAEMQVCRGQEKDALRMYEKILQL---EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS-SPTKMQYARYRD 163 (208)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-CCCchhHHHHHH
Confidence 67778888889999999999999988873 34 35677788887766554 455666666653 34433 45555
Q ss_pred HHHHHhcCCHHHHHHHHHHHhccCCCC
Q 047992 676 LTACRIHGNIDLAVLAIERLFDLEPGD 702 (868)
Q Consensus 676 l~a~~~~~~~~~a~~~~~~~~~l~p~~ 702 (868)
..++...|+++.|...++++++++|++
T Consensus 164 g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 164 GLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 666777899999999999999999974
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.54 E-value=2.6e-06 Score=83.46 Aligned_cols=161 Identities=9% Similarity=-0.055 Sum_probs=117.0
Q ss_pred CCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccC----ChHHHHHHHHHhhhhcCCCCChhH
Q 047992 564 KDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAG----MVDLGKKVFCSITECYQIIPMIEH 639 (868)
Q Consensus 564 ~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~m~~~~~~~p~~~~ 639 (868)
.++.++..+...|...|+.++|++.|++..+.| +...+..+...+.. | +.++|..+|+...+. -+...
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~~a 87 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSKSG 87 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCHHH
Confidence 455566666667777777777777777777654 34455555555665 5 777888888776542 23445
Q ss_pred HHHHHHhhhh----cCChHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh----cCCHHHHHHHHHHHhccCCCCchhHH
Q 047992 640 YSAMIDLYGR----SGKLEEAMEFIEDM-PIEPD---SSIWEALLTACRI----HGNIDLAVLAIERLFDLEPGDVLIQR 707 (868)
Q Consensus 640 y~~lvd~l~r----~g~~~eA~~~i~~~-~~~p~---~~~w~~ll~a~~~----~~~~~~a~~~~~~~~~l~p~~~~~~~ 707 (868)
+..+..+|.. .+++++|.+++++. ...|. +..+..|...+.. .+|.+.|...++++.++ |.++.++.
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~ 166 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEY 166 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHH
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHH
Confidence 6666666765 78889999998887 34442 6678888888877 78999999999999998 77888999
Q ss_pred HHHHHHhhc-C-----CChhHHHHHHHHHhcC
Q 047992 708 LILQIYAIC-G-----KPEDALKVRKLERENT 733 (868)
Q Consensus 708 ~l~~~y~~~-g-----~~~~a~~~~~~m~~~~ 733 (868)
.|+.+|... | ++++|.+..+...+.|
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 999999764 3 7889988877766655
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.53 E-value=3.8e-06 Score=86.48 Aligned_cols=208 Identities=13% Similarity=0.095 Sum_probs=139.8
Q ss_pred HHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcC--CHHHHHHHHhcCC---CCCceecHHHHHHH----Hhc---CChHH
Q 047992 518 KVKEIHGCVLRRSLES-SLPVMNSLIDTYAKSG--NIVYSRTIFDGMS---SKDIITWNSLICGY----VLH---GFWHA 584 (868)
Q Consensus 518 ~~~~i~~~~~~~~~~~-~~~~~~~Li~~y~k~g--~~~~A~~~f~~~~---~~d~~~~~~li~~~----~~~---g~~~~ 584 (868)
.+.+....++. +.| +..+++.-...+...| +++++.+.++.+. +++...|+--...+ ... +++++
T Consensus 51 ~aL~~t~~~L~--~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~ 128 (306)
T 3dra_A 51 RALHITELGIN--ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYR 128 (306)
T ss_dssp HHHHHHHHHHH--HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHH
T ss_pred HHHHHHHHHHH--HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHH
Confidence 34444444444 333 4445666666666667 7888888887654 45666777665555 444 67888
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCChH--HHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCC------hHH
Q 047992 585 ALDLFDQMKSFGLKP-NRGTFLSIILAHSLAGMVD--LGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGK------LEE 655 (868)
Q Consensus 585 A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~--~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~------~~e 655 (868)
++++++++.+ ..| |...|..-.....+.|..+ +++.+++.+.+.. .-+...|.--..++.+.|+ +++
T Consensus 129 EL~~~~~~l~--~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d--~~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 129 EFDILEAMLS--SDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD--LKNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccchhhhHHH
Confidence 8888888887 455 4466666666667777777 8888888887632 1233334444445555555 788
Q ss_pred HHHHHHhC-CC-CCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHhccC---CCCchhHHHHHHHHhhcCCChhHHHHHHHH
Q 047992 656 AMEFIEDM-PI-EPDSSIWEALLTACRIHGN-IDLAVLAIERLFDLE---PGDVLIQRLILQIYAICGKPEDALKVRKLE 729 (868)
Q Consensus 656 A~~~i~~~-~~-~p~~~~w~~ll~a~~~~~~-~~~a~~~~~~~~~l~---p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 729 (868)
++++++++ .. +-|...|+.+.......|+ .+.....++++++++ |.++.++..|+.+|...|+.++|.++.+.+
T Consensus 205 El~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l 284 (306)
T 3dra_A 205 ELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL 284 (306)
T ss_dssp HHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 88888776 22 3467788888888777765 444666777777776 788888888888888888888888888777
Q ss_pred Hh
Q 047992 730 RE 731 (868)
Q Consensus 730 ~~ 731 (868)
.+
T Consensus 285 ~~ 286 (306)
T 3dra_A 285 KS 286 (306)
T ss_dssp HH
T ss_pred Hh
Confidence 54
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.2e-06 Score=91.43 Aligned_cols=221 Identities=9% Similarity=-0.016 Sum_probs=149.5
Q ss_pred hcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 047992 477 QLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRT 556 (868)
Q Consensus 477 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~ 556 (868)
..|++++|.+++++..... +.. + +...++++.+...+. .....|...|++++|..
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-~~~---~------~~~~~~~~~A~~~~~---------------~a~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-KTS---F------MKWKPDYDSAASEYA---------------KAAVAFKNAKQLEQAKD 57 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-CCC---S------SSCSCCHHHHHHHHH---------------HHHHHHHHTTCHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc-ccc---c------cCCCCCHHHHHHHHH---------------HHHHHHHHcCCHHHHHH
Confidence 3567788888888765321 110 0 011244454444433 34567888899999988
Q ss_pred HHhcCCC-----CC----ceecHHHHHHHHhcCChHHHHHHHHHHHHCC---CCCC--HHHHHHHHHHhhccCChHHHHH
Q 047992 557 IFDGMSS-----KD----IITWNSLICGYVLHGFWHAALDLFDQMKSFG---LKPN--RGTFLSIILAHSLAGMVDLGKK 622 (868)
Q Consensus 557 ~f~~~~~-----~d----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~p~--~~t~~~ll~a~~~~g~~~~a~~ 622 (868)
.|.+... .+ ..+|+.+...|...|++++|++.|++.++.- -.|. ..++..+...+.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 8876542 12 3478888899999999999999999876521 1222 2466777778888 99999999
Q ss_pred HHHHhhhhcCCCCC----hhHHHHHHHhhhhcCChHHHHHHHHhC----CCCCC---H-HHHHHHHHHHHhcCCHHHHHH
Q 047992 623 VFCSITECYQIIPM----IEHYSAMIDLYGRSGKLEEAMEFIEDM----PIEPD---S-SIWEALLTACRIHGNIDLAVL 690 (868)
Q Consensus 623 ~~~~m~~~~~~~p~----~~~y~~lvd~l~r~g~~~eA~~~i~~~----~~~p~---~-~~w~~ll~a~~~~~~~~~a~~ 690 (868)
+|+...+.+.-..+ ...+..+..+|.+.|++++|.+.+++. |-.++ . ..|..+...+...|+++.|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99987764322111 456788899999999999999999886 21222 1 255666666777899999999
Q ss_pred HHHHHhccCCCCchh-----HHHHHHHHhhcCCChhHHHH
Q 047992 691 AIERLFDLEPGDVLI-----QRLILQIYAICGKPEDALKV 725 (868)
Q Consensus 691 ~~~~~~~l~p~~~~~-----~~~l~~~y~~~g~~~~a~~~ 725 (868)
.+++++ ++|+.... ...+...| ..|+.+++.++
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 999999 99976543 33444445 45665555443
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.52 E-value=4.2e-06 Score=93.25 Aligned_cols=390 Identities=10% Similarity=0.017 Sum_probs=206.6
Q ss_pred cC-ChhHHHHHHHHHHHcCCccChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcCC-hhHHH
Q 047992 236 IG-ENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGR-TSQAL 313 (868)
Q Consensus 236 ~g-~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~A~ 313 (868)
.| +++.|..+|+++... -|. |+.+.+..+|++.... .|++..|...+.-..+.+. .+...
T Consensus 7 ~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~ 68 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLY 68 (493)
T ss_dssp -----CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTH
T ss_pred cCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHH
Confidence 45 377777777777642 121 8899999999998874 4688888888887777663 35566
Q ss_pred HHHHHHHhC-CccC-CcccHHHHHHHHh----chhhHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHcCCCHHHHHHHHH
Q 047992 314 DLFKEMSFV-GVMP-NGVTITSAISACT----DLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEELEAAERVFD 387 (868)
Q Consensus 314 ~l~~~m~~~-g~~p-d~~t~~~ll~a~~----~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~vf~ 387 (868)
.+|+..... |..| +...|...+..+. ..++.+.++.++..++......-..+|......-.. .....+..+..
T Consensus 69 ~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~-~~~~~~~~~~~ 147 (493)
T 2uy1_A 69 EVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELE-LNKITGKKIVG 147 (493)
T ss_dssp HHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH-HCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHH-hccccHHHHHH
Confidence 677766542 4333 3445555555443 246677788888888763221111122222111111 11122222221
Q ss_pred hcCCCCeehHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCeeehhhHHHHHHhcC-------CHHHHHHHHHhcccCCC
Q 047992 388 MIKDKDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNVLISGYIQNG-------NEDEAVDLFQRMGKNDK 460 (868)
Q Consensus 388 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g-------~~~~A~~~f~~m~~~~~ 460 (868)
.. . ..+..|..+++.+...--..+...|...++.-...+ ..+.+..+|+++....
T Consensus 148 ~~---------------~--~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~- 209 (493)
T 2uy1_A 148 DT---------------L--PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF- 209 (493)
T ss_dssp HH---------------H--HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-
T ss_pred HH---------------h--HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-
Confidence 11 0 122233333333321000001123333333211110 0234556666665532
Q ss_pred CCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHH
Q 047992 461 VKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNS 540 (868)
Q Consensus 461 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 540 (868)
+.+...|...+.-+.+.|+.++|..+|++.... |....+.. +++.....+ +++..+.+
T Consensus 210 -p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~---~~~~~l~~------------ 267 (493)
T 2uy1_A 210 -YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEE---AVYGDLKR------------ 267 (493)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCT---HHHHHHHH------------
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchh---HHHHHHHH------------
Confidence 444566777777777777777777777777654 44332211 111110000 11111111
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-hhccCChHH
Q 047992 541 LIDTYAKSGNIVYSRTIFDGMSSKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILA-HSLAGMVDL 619 (868)
Q Consensus 541 Li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~ 619 (868)
.|... ..+.+.. .........|...+.-+.++|..+.|.++|++. +. ..++...|...... +...++++.
T Consensus 268 ---~~~~~-~~~~~~~---~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ 338 (493)
T 2uy1_A 268 ---KYSMG-EAESAEK---VFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRAT 338 (493)
T ss_dssp ---HTC--------------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHH
T ss_pred ---HHHhh-ccchhhh---hcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHH
Confidence 10000 0000000 000011235666666666677788888888888 32 11233334322111 122347999
Q ss_pred HHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 047992 620 GKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPIEPDSSIWEALLTACRIHGNIDLAVLAIERLFD 697 (868)
Q Consensus 620 a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~ 697 (868)
|+.+|+...+.++-.| +.+...++.+.+.|..+.|..++++++ ....+|...+.--..+|+.+.+..++++.++
T Consensus 339 ar~ife~al~~~~~~~--~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 339 PYNIFSSGLLKHPDST--LLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHCTTCH--HHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999888765544 346667888889999999999999983 3567899999988899999999988888764
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.48 E-value=6.8e-07 Score=84.70 Aligned_cols=154 Identities=11% Similarity=0.074 Sum_probs=116.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH--hh
Q 047992 538 MNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILA--HS 612 (868)
Q Consensus 538 ~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a--~~ 612 (868)
...+...+.+.|++++|...|++.. +.+...|..+...|...|++++|+..|++... ..|+.. +..++.. +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~--~~p~~~-~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPL--EYQDNS-YKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG--GGCCHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh--ccCChH-HHHHHHHHHHH
Confidence 4456677888999999999999876 45677899999999999999999999998876 445432 2222221 12
Q ss_pred ccCChHHHHHHHHHhhhhcCCCCC-hhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCC---HHHHHHHHHHHHhcCCHHH
Q 047992 613 LAGMVDLGKKVFCSITECYQIIPM-IEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPD---SSIWEALLTACRIHGNIDL 687 (868)
Q Consensus 613 ~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~---~~~w~~ll~a~~~~~~~~~ 687 (868)
..+...++...|+...+ ..|+ ...+..+..+|.+.|++++|.+.++++ ...|+ ...|..|...+...|+.+.
T Consensus 86 ~~~~~~~a~~~~~~al~---~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 86 QQAAESPELKRLEQELA---ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHTSCHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred hhcccchHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 22333457888887776 3453 677888899999999999999999887 44554 5688999999999999999
Q ss_pred HHHHHHHHhc
Q 047992 688 AVLAIERLFD 697 (868)
Q Consensus 688 a~~~~~~~~~ 697 (868)
|...+++++.
T Consensus 163 A~~~y~~al~ 172 (176)
T 2r5s_A 163 IASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998764
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.48 E-value=2.1e-07 Score=95.88 Aligned_cols=191 Identities=12% Similarity=-0.034 Sum_probs=135.8
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHH
Q 047992 534 SLPVMNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR-GTFLSIIL 609 (868)
Q Consensus 534 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~ 609 (868)
+...+..+...|.+.|++++|...|++.. +.+...|..+...|...|++++|++.|++.++ +.|+. ..+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 44566778888889999999999998654 45777888999999999999999999999887 56754 67777888
Q ss_pred HhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 047992 610 AHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPIEPDSSIWEALLTACRIHGNIDLAV 689 (868)
Q Consensus 610 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~~~~p~~~~w~~ll~a~~~~~~~~~a~ 689 (868)
++...|++++|..+|+...+...-.|. .+...+....+.++..+... .......++..++..+ +.. ..|+.+.|.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l-~~~~~~~A~ 155 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRL--NFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRL-IAAEREREL 155 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTC--CCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHH-HHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchh--hHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHH-HHHHHHHHH
Confidence 899999999999999887663221111 11112222222222222222 2333344555554444 333 369999999
Q ss_pred HHHHHHhccCCCCchhHHHHHHHHhhc-CCChhHHHHHHHHHh
Q 047992 690 LAIERLFDLEPGDVLIQRLILQIYAIC-GKPEDALKVRKLERE 731 (868)
Q Consensus 690 ~~~~~~~~l~p~~~~~~~~l~~~y~~~-g~~~~a~~~~~~m~~ 731 (868)
..++++++++|++......+..++... +++++|.++.....+
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 156 EECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp TTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999999999999988888888888887 788999988876644
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.47 E-value=1.6e-06 Score=84.84 Aligned_cols=123 Identities=11% Similarity=-0.051 Sum_probs=97.0
Q ss_pred HHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 047992 605 LSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIH 682 (868)
Q Consensus 605 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~ 682 (868)
..+...+...|++++|...|+.. +.|+...|..+..++.+.|++++|.+.+++. ...| +..+|..+..++...
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHH-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence 34444556667777777777655 2456667777777888888888888887776 2333 456888899999999
Q ss_pred CCHHHHHHHHHHHhccCCCCc----------------hhHHHHHHHHhhcCCChhHHHHHHHHHhc
Q 047992 683 GNIDLAVLAIERLFDLEPGDV----------------LIQRLILQIYAICGKPEDALKVRKLEREN 732 (868)
Q Consensus 683 ~~~~~a~~~~~~~~~l~p~~~----------------~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 732 (868)
|+++.|...+++++++.|++. .++..++.+|...|++++|.+..+...+.
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 999999999999999999888 89999999999999999999988776543
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=7e-07 Score=92.26 Aligned_cols=160 Identities=8% Similarity=-0.079 Sum_probs=98.0
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH-HHHHH
Q 047992 534 SLPVMNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTF-LSIIL 609 (868)
Q Consensus 534 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll~ 609 (868)
+......+...+.+.|++++|...|++.. +.+...+..+...|.+.|++++|++.|++... ..|+.... .....
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~--~~p~~~~~~~~~~~ 193 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL--QDQDTRYQGLVAQI 193 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG--GGCSHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch--hhcchHHHHHHHHH
Confidence 44445556666666777777777776543 34555666666677777777777777776655 34544322 22222
Q ss_pred HhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCC---HHHHHHHHHHHHhcCCH
Q 047992 610 AHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPD---SSIWEALLTACRIHGNI 685 (868)
Q Consensus 610 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~---~~~w~~ll~a~~~~~~~ 685 (868)
.+...|..++|...|+...... +.+.+.+..+..+|...|++++|.+.++++ ...|+ ...|..|+..+...|+.
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~--P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAEN--PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHhhcccCccHHHHHHHHhcC--CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 3455566666666666665532 223455666777777777777777777665 22333 45777777777777777
Q ss_pred HHHHHHHHHHhc
Q 047992 686 DLAVLAIERLFD 697 (868)
Q Consensus 686 ~~a~~~~~~~~~ 697 (868)
+.|...+++.+.
T Consensus 272 ~~a~~~~r~al~ 283 (287)
T 3qou_A 272 DALASXYRRQLY 283 (287)
T ss_dssp CHHHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 777777776653
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.46 E-value=2.2e-06 Score=83.80 Aligned_cols=146 Identities=9% Similarity=-0.033 Sum_probs=107.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCC
Q 047992 538 MNSLIDTYAKSGNIVYSRTIFDGMSSKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPN-RGTFLSIILAHSLAGM 616 (868)
Q Consensus 538 ~~~Li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~ 616 (868)
+..+...|.+.|++++|...|++..+++...|..+...|...|++++|++.|++..+ ..|+ ...+..+..++...|+
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RDKHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHccc
Confidence 455677788899999999999988888888888899999999999999999999887 4454 4666777777788888
Q ss_pred hHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047992 617 VDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPIEPDS-SIWEALLTACRIHGNIDLAVLAIERL 695 (868)
Q Consensus 617 ~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~~~~p~~-~~w~~ll~a~~~~~~~~~a~~~~~~~ 695 (868)
.++|...|+...+...-.+... +...| ....|+. .+|..+..++...|+++.|...++++
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~--------~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 147 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLID--------YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 147 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEE--------CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCccHHH--------HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 8888888887766322222111 00011 0233443 47788888888899999999999999
Q ss_pred hccCCCCch
Q 047992 696 FDLEPGDVL 704 (868)
Q Consensus 696 ~~l~p~~~~ 704 (868)
++++|++..
T Consensus 148 l~~~p~~~~ 156 (213)
T 1hh8_A 148 TSMKSEPRH 156 (213)
T ss_dssp HTTCCSGGG
T ss_pred HHcCccccc
Confidence 999997643
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=3.3e-07 Score=84.00 Aligned_cols=95 Identities=17% Similarity=0.128 Sum_probs=77.8
Q ss_pred hhHHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHh
Q 047992 637 IEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYA 714 (868)
Q Consensus 637 ~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 714 (868)
...+..+...+.+.|++++|.+.+++. ...| +...|..+..++...|+++.|...++++++++|+++.++..++.+|.
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 345566677788888888888888876 3344 56688888888899999999999999999999999999999999999
Q ss_pred hcCCChhHHHHHHHHHh
Q 047992 715 ICGKPEDALKVRKLERE 731 (868)
Q Consensus 715 ~~g~~~~a~~~~~~m~~ 731 (868)
..|++++|.+..+...+
T Consensus 101 ~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQE 117 (148)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999987765543
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.45 E-value=6.2e-08 Score=102.69 Aligned_cols=142 Identities=11% Similarity=0.039 Sum_probs=101.9
Q ss_pred ceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHH
Q 047992 566 IITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMID 645 (868)
Q Consensus 566 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd 645 (868)
...|+.+...|.+.|++++|+..|++.++ +.|+...+ ..+++...-. + ....|..+..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~-----------~~~~~~~~~~-~--------~~~~~~nla~ 204 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVS--WLEYESSF-----------SNEEAQKAQA-L--------RLASHLNLAM 204 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HTTTCCCC-----------CSHHHHHHHH-H--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HhhccccC-----------ChHHHHHHHH-H--------HHHHHHHHHH
Confidence 44566666666666666666666666665 33432110 0011110000 0 1356777888
Q ss_pred hhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHH
Q 047992 646 LYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDAL 723 (868)
Q Consensus 646 ~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~ 723 (868)
+|.+.|++++|++.++++ ...| +..+|..+..++...|+++.|...++++++++|+++.++..|+.+|...|++++|.
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 284 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE 284 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999998887 3444 56689999999999999999999999999999999999999999999999999994
Q ss_pred H-HHHHH
Q 047992 724 K-VRKLE 729 (868)
Q Consensus 724 ~-~~~~m 729 (868)
+ ..+.|
T Consensus 285 ~~~~~~~ 291 (336)
T 1p5q_A 285 KKLYANM 291 (336)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4 44444
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.43 E-value=1.1e-06 Score=78.00 Aligned_cols=99 Identities=10% Similarity=0.019 Sum_probs=86.3
Q ss_pred CCCC-hhHHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHH
Q 047992 633 IIPM-IEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLI 709 (868)
Q Consensus 633 ~~p~-~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l 709 (868)
+.|+ .+.+.-....|.+.|++++|++.+++. ...| +..+|..+..++...|+++.|...++++++++|+++.+|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 4454 345667788999999999999999987 4445 566999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCChhHHHHHHHHHh
Q 047992 710 LQIYAICGKPEDALKVRKLERE 731 (868)
Q Consensus 710 ~~~y~~~g~~~~a~~~~~~m~~ 731 (868)
+.+|...|++++|.+..+...+
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999998776543
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.43 E-value=2.1e-06 Score=75.26 Aligned_cols=111 Identities=17% Similarity=0.213 Sum_probs=74.5
Q ss_pred HHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhc
Q 047992 605 LSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PI-EPDSSIWEALLTACRIH 682 (868)
Q Consensus 605 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~-~p~~~~w~~ll~a~~~~ 682 (868)
..+...+...|++++|..+|+.+.+.. ..+...+..+..++.+.|++++|.++++++ .. +.+..+|..+...+...
T Consensus 13 ~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 90 (125)
T 1na0_A 13 YNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQ 90 (125)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh
Confidence 333344444444444444444443321 112334555666666667777777666665 22 23566888888899999
Q ss_pred CCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcC
Q 047992 683 GNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICG 717 (868)
Q Consensus 683 ~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g 717 (868)
|+++.|...++++++++|+++..+..++.++...|
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 91 GDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999998887654
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.42 E-value=1.6e-06 Score=76.86 Aligned_cols=116 Identities=11% Similarity=0.030 Sum_probs=82.0
Q ss_pred HHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 047992 603 TFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACR 680 (868)
Q Consensus 603 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~ 680 (868)
.+..+...+...|++++|..+|+...+.. ..+...+..+..++...|++++|.+.+++. ...| +..+|..+...+.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 33444444455555555555555544421 123445566666677777777777777665 2233 4568888888999
Q ss_pred hcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCCh
Q 047992 681 IHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPE 720 (868)
Q Consensus 681 ~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~ 720 (868)
..|+++.|...++++++++|+++..+..++.+|...|+++
T Consensus 92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999988864
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.41 E-value=6.8e-07 Score=89.76 Aligned_cols=197 Identities=8% Similarity=-0.028 Sum_probs=119.6
Q ss_pred hcCCHHHHHHHHhcCC---CCCceecHHH-------HHHHHhcCChHHHHHHHHHHHHCCCCCCHH--------------
Q 047992 547 KSGNIVYSRTIFDGMS---SKDIITWNSL-------ICGYVLHGFWHAALDLFDQMKSFGLKPNRG-------------- 602 (868)
Q Consensus 547 k~g~~~~A~~~f~~~~---~~d~~~~~~l-------i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-------------- 602 (868)
..++.+.|.+.|.+.. +.....|+.+ ...+...++..+++..+.+-.. +.|+..
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 3566677777776554 3344566666 3445555555555554444333 444321
Q ss_pred --------HHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhCCCCCCH----H
Q 047992 603 --------TFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPIEPDS----S 670 (868)
Q Consensus 603 --------t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~~~~p~~----~ 670 (868)
....+..++...|++++|.+.|..+... .|+......+..++.+.|++++|+..++.....|++ .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 1122344566677777777777766542 232223444555777777788877777765333322 3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccC--CC-CchhHHHHHHHHhhcCCChhHHHHHHHHHhcCCCCCCcccEEEEcC
Q 047992 671 IWEALLTACRIHGNIDLAVLAIERLFDLE--PG-DVLIQRLILQIYAICGKPEDALKVRKLERENTRRNSFGQCWIEVKN 747 (868)
Q Consensus 671 ~w~~ll~a~~~~~~~~~a~~~~~~~~~l~--p~-~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~g~s~i~~~~ 747 (868)
++..|..++...|+.+.|+..++++.+-. |. .+.....++.++...|+.++|..+.+.+...
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--------------- 237 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--------------- 237 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---------------
Confidence 66667777777788888888887777533 44 4456677777788888888887777766543
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHhCCCc
Q 047992 748 LVYTFVTGGWSESYSDLLYSWLQNVPEN 775 (868)
Q Consensus 748 ~~~~f~~~d~~hp~~~~i~~~l~~~g~~ 775 (868)
+|. .++...|....|.
T Consensus 238 -----------~P~-~~~~~aL~~~~~~ 253 (282)
T 4f3v_A 238 -----------HPE-PKVAAALKDPSYR 253 (282)
T ss_dssp -----------SCC-HHHHHHHHCTTCC
T ss_pred -----------CCc-HHHHHHHhCCCCC
Confidence 466 6777777766665
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.41 E-value=3.3e-06 Score=87.53 Aligned_cols=157 Identities=5% Similarity=-0.074 Sum_probs=112.0
Q ss_pred ecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCC--CC--hh
Q 047992 568 TWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR-----GTFLSIILAHSLAGMVDLGKKVFCSITECYQII--PM--IE 638 (868)
Q Consensus 568 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~--p~--~~ 638 (868)
.+...+..+...|++++|++.+++..+.....+. ..+..+...+...|+.++|..+|+...+...-. +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3444566777888888888888877764221111 122334445667788888888888766432211 11 34
Q ss_pred HHHHHHHhhhhcCChHHHHHHHHhCC----CCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC------c
Q 047992 639 HYSAMIDLYGRSGKLEEAMEFIEDMP----IEPD-----SSIWEALLTACRIHGNIDLAVLAIERLFDLEPGD------V 703 (868)
Q Consensus 639 ~y~~lvd~l~r~g~~~eA~~~i~~~~----~~p~-----~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~------~ 703 (868)
.|..+..+|...|++++|.+.++++- ..|+ ..++..+...+...|+++.|...+++++++.++. +
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 67788888889999999888887751 1222 2488888999999999999999999999876431 5
Q ss_pred hhHHHHHHHHhhcCCChhH-HH
Q 047992 704 LIQRLILQIYAICGKPEDA-LK 724 (868)
Q Consensus 704 ~~~~~l~~~y~~~g~~~~a-~~ 724 (868)
..|..++++|...|++++| ..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~ 258 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIED 258 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHH
Confidence 6789999999999999999 66
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.41 E-value=2.2e-06 Score=76.31 Aligned_cols=116 Identities=12% Similarity=0.052 Sum_probs=80.0
Q ss_pred ceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHH
Q 047992 566 IITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMID 645 (868)
Q Consensus 566 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd 645 (868)
...|..+...+...|++++|++.|++..+ ..|+ +...+..+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~~~-----------------------------------~~~~~~~la~ 58 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIK--RNPK-----------------------------------DAKLYSNRAA 58 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHT--TCTT-----------------------------------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCC-----------------------------------cHHHHHHHHH
Confidence 34555566666666666666666666655 3332 2233444555
Q ss_pred hhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCC
Q 047992 646 LYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGK 718 (868)
Q Consensus 646 ~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 718 (868)
++...|++++|.+.++++ ...| +..+|..+..++...|+++.|...++++++++|++...+..++.+|...|+
T Consensus 59 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 59 CYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 555556666666555554 2223 456888888889999999999999999999999999999999999987764
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.40 E-value=8.9e-07 Score=92.54 Aligned_cols=197 Identities=8% Similarity=-0.105 Sum_probs=148.5
Q ss_pred chhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCceecHHHHHHHHhcCChHHHHHHHHH
Q 047992 512 YLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMSSKDIITWNSLICGYVLHGFWHAALDLFDQ 591 (868)
Q Consensus 512 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~ 591 (868)
..|.++.+.++.....+..-. . .+...|+++.|...|.+. ...|...|++++|++.|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHH
Confidence 356777888888777663211 1 111158899998888764 5678899999999999998
Q ss_pred HHHC----CCCCC-HHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCC--C--ChhHHHHHHHhhhhcCChHHHHHHHHh
Q 047992 592 MKSF----GLKPN-RGTFLSIILAHSLAGMVDLGKKVFCSITECYQII--P--MIEHYSAMIDLYGRSGKLEEAMEFIED 662 (868)
Q Consensus 592 m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~--p--~~~~y~~lvd~l~r~g~~~eA~~~i~~ 662 (868)
..+. |-.+. ..+|..+...+...|++++|+.+|+...+.+.-. | ....+..+..+|.+ |++++|++.+++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 8762 11111 2477788888999999999999999876643221 1 24577888899988 999999999988
Q ss_pred C----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc------hhHHHHHHHHhhcCCChhHHHHHHH
Q 047992 663 M----PIEPD----SSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDV------LIQRLILQIYAICGKPEDALKVRKL 728 (868)
Q Consensus 663 ~----~~~p~----~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~------~~~~~l~~~y~~~g~~~~a~~~~~~ 728 (868)
. +...+ ..++..+...+...|+++.|...+++++++.|++. .++..++.+|...|++++|.+..+.
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6 21112 34788888999999999999999999999987654 2677788899999999999998775
Q ss_pred HH
Q 047992 729 ER 730 (868)
Q Consensus 729 m~ 730 (868)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 53
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.39 E-value=8.9e-07 Score=88.91 Aligned_cols=136 Identities=14% Similarity=-0.016 Sum_probs=105.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCC--hhHHHHHHHhhhh
Q 047992 572 LICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPM--IEHYSAMIDLYGR 649 (868)
Q Consensus 572 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~y~~lvd~l~r 649 (868)
....+...|++++|.++|+.+.. ..|+......+...+.+.|++++++.+|+..... . .|. ...+..+..++.+
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~--~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPV--AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCC--TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHHHHH
Confidence 56677888999999999988876 4576655555566788899999999999855431 1 221 2356777889999
Q ss_pred cCChHHHHHHHHhC---CCCCC-H-HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHH
Q 047992 650 SGKLEEAMEFIEDM---PIEPD-S-SIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQI 712 (868)
Q Consensus 650 ~g~~~eA~~~i~~~---~~~p~-~-~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~ 712 (868)
.|++++|++.+++. +.+|. . ..+..+..+++..|+.+.|...++++++.+|+ +.++..|.+.
T Consensus 184 LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~~ 250 (282)
T 4f3v_A 184 LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKDP 250 (282)
T ss_dssp TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHCT
T ss_pred CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhCC
Confidence 99999999999987 33254 3 37788888899999999999999999999998 8777777654
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.38 E-value=1.5e-05 Score=81.90 Aligned_cols=160 Identities=10% Similarity=0.017 Sum_probs=123.4
Q ss_pred CCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChH--HHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCC------
Q 047992 549 GNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWH--AALDLFDQMKSFGLKP-NRGTFLSIILAHSLAGM------ 616 (868)
Q Consensus 549 g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~--~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~------ 616 (868)
++++++...++++. ++|..+|+--.-.+.+.|.++ ++++.++++++ ..| |...|..-.....+.|.
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~--~d~~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVID--TDLKNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccccchhhh
Confidence 67888888888764 677888888888888888888 99999999998 455 45667666666666665
Q ss_pred hHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCCh-HHHHHHHHhC-CC----CCCHHHHHHHHHHHHhcCCHHHHHH
Q 047992 617 VDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKL-EEAMEFIEDM-PI----EPDSSIWEALLTACRIHGNIDLAVL 690 (868)
Q Consensus 617 ~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~-~eA~~~i~~~-~~----~p~~~~w~~ll~a~~~~~~~~~a~~ 690 (868)
+++++++++.+.... .-+...|.-...++.+.|+. +++.++.++. .. ..++..|..|...+...|+.+.|.+
T Consensus 202 ~~eEl~~~~~aI~~~--p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 202 IDEELNYVKDKIVKC--PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 899999999888742 23344566677778888874 4466677776 22 2466789999999999999999999
Q ss_pred HHHHHhc-cCCCCchhHHHHHHH
Q 047992 691 AIERLFD-LEPGDVLIQRLILQI 712 (868)
Q Consensus 691 ~~~~~~~-l~p~~~~~~~~l~~~ 712 (868)
+++++.+ +||-...+|...++.
T Consensus 280 ~~~~l~~~~Dpir~~yW~~~~~~ 302 (306)
T 3dra_A 280 VYDLLKSKYNPIRSNFWDYQISK 302 (306)
T ss_dssp HHHHHHHTTCGGGHHHHHHHHHT
T ss_pred HHHHHHhccChHHHHHHHHHHhh
Confidence 9999996 899998888876654
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.38 E-value=2.8e-05 Score=80.38 Aligned_cols=158 Identities=6% Similarity=-0.077 Sum_probs=113.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCC-CCCCHH----HHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCC----hhHHHH
Q 047992 572 LICGYVLHGFWHAALDLFDQMKSFG-LKPNRG----TFLSIILAHSLAGMVDLGKKVFCSITECYQIIPM----IEHYSA 642 (868)
Q Consensus 572 li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~y~~ 642 (868)
.+..+...|++++|++++++..+.. ..|+.. .+..+...+...|+.++|+.+|+...+...-.++ ...|..
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3566777888888888888877632 122211 2223555666777888888888887763222233 235788
Q ss_pred HHHhhhhcCChHHHHHHHHhCC-------C-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC------chhHH
Q 047992 643 MIDLYGRSGKLEEAMEFIEDMP-------I-EPDS-SIWEALLTACRIHGNIDLAVLAIERLFDLEPGD------VLIQR 707 (868)
Q Consensus 643 lvd~l~r~g~~~eA~~~i~~~~-------~-~p~~-~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~------~~~~~ 707 (868)
+..+|.+.|++++|.+.++++- . .|.. .++..+...+...|+++.|...+++++++.|+. +..|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 8888888899888888887761 1 1222 278889999999999999999999999887654 67889
Q ss_pred HHHHHHhhcCC-ChhHHHHHHHH
Q 047992 708 LILQIYAICGK-PEDALKVRKLE 729 (868)
Q Consensus 708 ~l~~~y~~~g~-~~~a~~~~~~m 729 (868)
.++.+|...|+ +++|.+..+..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHH
Confidence 99999999996 49998865543
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.34 E-value=1.8e-06 Score=78.30 Aligned_cols=93 Identities=12% Similarity=0.012 Sum_probs=70.0
Q ss_pred HHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhc
Q 047992 639 HYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAIC 716 (868)
Q Consensus 639 ~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 716 (868)
.+..+...+.+.|++++|.+.+++. ...| +...|..+..++...|+++.|...++++++++|+++..+..++.+|...
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 99 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQL 99 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 3445566677777778777777766 3334 4557888888888888888888888888888888888888888888888
Q ss_pred CCChhHHHHHHHHHh
Q 047992 717 GKPEDALKVRKLERE 731 (868)
Q Consensus 717 g~~~~a~~~~~~m~~ 731 (868)
|++++|.+..+...+
T Consensus 100 g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 100 GDLDGAESGFYSARA 114 (142)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 888888887665543
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.34 E-value=3.6e-06 Score=78.35 Aligned_cols=119 Identities=13% Similarity=-0.028 Sum_probs=79.9
Q ss_pred HhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 047992 610 AHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDL 687 (868)
Q Consensus 610 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~ 687 (868)
.+...|++++|..+|+...+.. +.+...+..+..++.+.|++++|.+.+++. ...| +..+|..+..++...|+++.
T Consensus 22 ~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~ 99 (166)
T 1a17_A 22 DYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRA 99 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHH
Confidence 3344444444444444443321 112344555566666666666666666655 2223 45688888888999999999
Q ss_pred HHHHHHHHhccCCCCchhHHHHHH--HHhhcCCChhHHHHHHHHH
Q 047992 688 AVLAIERLFDLEPGDVLIQRLILQ--IYAICGKPEDALKVRKLER 730 (868)
Q Consensus 688 a~~~~~~~~~l~p~~~~~~~~l~~--~y~~~g~~~~a~~~~~~m~ 730 (868)
|...++++++++|++...+..++. .+...|++++|.+..+...
T Consensus 100 A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 100 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 999999999999999988855544 4888899999998766543
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.32 E-value=2.9e-06 Score=82.83 Aligned_cols=181 Identities=12% Similarity=0.065 Sum_probs=123.3
Q ss_pred hhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 047992 470 SLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSG 549 (868)
Q Consensus 470 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g 549 (868)
.....+.+.|++++|+..|++... ..|+......... .. ........+.+.+...|.+.|
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~-~~-----------------~~~~~~~~~~~~lg~~~~~~g 68 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTIA--LNIDRTEMYYWTN-VD-----------------KNSEISSKLATELALAYKKNR 68 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HCHHHHHHHHHHH-SC-----------------TTSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHhh-hc-----------------chhhhhHHHHHHHHHHHHHCC
Confidence 345567789999999999998875 3454332111110 00 000112334456889999999
Q ss_pred CHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCC--hHHHHHH
Q 047992 550 NIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR-GTFLSIILAHSLAGM--VDLGKKV 623 (868)
Q Consensus 550 ~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~--~~~a~~~ 623 (868)
++++|...|++.. +.+...|..+...|...|++++|++.|++.++ +.|+. .++..+..++...|. .+++...
T Consensus 69 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~ 146 (208)
T 3urz_A 69 NYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQ--LEADNLAANIFLGNYYYLTAEQEKKKLETD 146 (208)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 9999999999764 56788999999999999999999999999999 67865 666677666655543 3344445
Q ss_pred HHHhhhhcCCCCChhH--HHHHHHhhhhcCChHHHHHHHHhC-CCCCCHHHHHHHHH
Q 047992 624 FCSITECYQIIPMIEH--YSAMIDLYGRSGKLEEAMEFIEDM-PIEPDSSIWEALLT 677 (868)
Q Consensus 624 ~~~m~~~~~~~p~~~~--y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~~~~w~~ll~ 677 (868)
|.... .|+... +..+...+...|++++|.+.+++. ...|+......|..
T Consensus 147 ~~~~~-----~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~ 198 (208)
T 3urz_A 147 YKKLS-----SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDK 198 (208)
T ss_dssp HC--------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred HHHHh-----CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 54432 344332 333455666789999999999987 78898776665544
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.29 E-value=1.3e-06 Score=76.79 Aligned_cols=92 Identities=17% Similarity=0.107 Sum_probs=80.9
Q ss_pred HHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhc
Q 047992 639 HYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAIC 716 (868)
Q Consensus 639 ~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 716 (868)
.+..+...+.+.|++++|...+++. ...| +...|..+..++...|+.+.|+..++++++++|+++.++..|+.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 4556677888999999999999987 4445 5668998999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHH
Q 047992 717 GKPEDALKVRKLER 730 (868)
Q Consensus 717 g~~~~a~~~~~~m~ 730 (868)
|++++|....+...
T Consensus 99 g~~~~A~~~~~~al 112 (121)
T 1hxi_A 99 HNANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999877654
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=7.8e-07 Score=81.44 Aligned_cols=112 Identities=9% Similarity=-0.008 Sum_probs=75.1
Q ss_pred CCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHH
Q 047992 597 LKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWE 673 (868)
Q Consensus 597 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~ 673 (868)
+.|+. ..+..+...+...|++++|...|+...... +.+...|..+..+|.+.|++++|.+.+++. ...| ++..|.
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 93 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD--HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPF 93 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHH
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence 34433 344444555556666666666666555421 123445566667777777777777777766 3334 455788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHH
Q 047992 674 ALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLIL 710 (868)
Q Consensus 674 ~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~ 710 (868)
.+..++...|+++.|+..++++++++|+++.......
T Consensus 94 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 130 (148)
T 2vgx_A 94 HAAECLLQXGELAEAESGLFLAQELIANXPEFXELST 130 (148)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHH
Confidence 8888899999999999999999999999887655443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.27 E-value=1.2e-06 Score=80.11 Aligned_cols=95 Identities=8% Similarity=-0.038 Sum_probs=58.7
Q ss_pred HHHHHhhccCChHHHHHHHHHhhhhcCCCC-ChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 047992 606 SIILAHSLAGMVDLGKKVFCSITECYQIIP-MIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIH 682 (868)
Q Consensus 606 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~ 682 (868)
.+..++...|++++|..+|+...+. .| +...|..+..+|.+.|++++|.+.++++ ...| ++..|..+..++...
T Consensus 41 ~lg~~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~l 117 (151)
T 3gyz_A 41 SYAYDFYNKGRIEEAEVFFRFLCIY---DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRL 117 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc
Confidence 3333444444444444444444331 12 2334555566666666666666666665 2334 345788888888888
Q ss_pred CCHHHHHHHHHHHhccCCCCc
Q 047992 683 GNIDLAVLAIERLFDLEPGDV 703 (868)
Q Consensus 683 ~~~~~a~~~~~~~~~l~p~~~ 703 (868)
|+++.|...+++++++.|+++
T Consensus 118 g~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 118 KAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp TCHHHHHHHHHHHHHHCCCHH
T ss_pred CCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999988753
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.26 E-value=4.2e-06 Score=73.96 Aligned_cols=92 Identities=13% Similarity=0.021 Sum_probs=67.8
Q ss_pred HHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhc
Q 047992 639 HYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAIC 716 (868)
Q Consensus 639 ~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 716 (868)
.+..+...+.+.|++++|.+.+++. ...| +..+|..+..++...|+++.|...++++++++|+++.+|..++.+|...
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 85 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAV 85 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 3555566677777777777777765 3333 4557777777778888888888888888888888888888888888888
Q ss_pred CCChhHHHHHHHHH
Q 047992 717 GKPEDALKVRKLER 730 (868)
Q Consensus 717 g~~~~a~~~~~~m~ 730 (868)
|++++|.+..+...
T Consensus 86 ~~~~~A~~~~~~al 99 (126)
T 3upv_A 86 KEYASALETLDAAR 99 (126)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHH
Confidence 88888887665543
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.26 E-value=1.6e-06 Score=82.09 Aligned_cols=128 Identities=11% Similarity=0.112 Sum_probs=69.4
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHh-hhhcCCh
Q 047992 576 YVLHGFWHAALDLFDQMKSFGLKP-NRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDL-YGRSGKL 653 (868)
Q Consensus 576 ~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~-l~r~g~~ 653 (868)
+...|++++|++.|++..+ ..| +...+..+...+...|++++|..+|+...+..+ .+...+..+..+ +.+.|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~l~~~~~~~ 95 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG--ENAELYAALATVLYYQASQH 95 (177)
T ss_dssp CC-----CCCCHHHHHHHH--HCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTTTC
T ss_pred hhhccCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHhcCCc
Confidence 3455667777777777666 334 335555666666666777777776666655322 123345555555 4455665
Q ss_pred --HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHH
Q 047992 654 --EEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQR 707 (868)
Q Consensus 654 --~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~ 707 (868)
++|.+.++++ ...| +..+|..+...+...|+++.|...++++++++|+++....
T Consensus 96 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 153 (177)
T 2e2e_A 96 MTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQ 153 (177)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHH
T ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHH
Confidence 6666666554 2223 2345555555566666666666666666666666554433
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.24 E-value=4.3e-06 Score=79.08 Aligned_cols=121 Identities=7% Similarity=0.069 Sum_probs=88.6
Q ss_pred hhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhcCCH--
Q 047992 611 HSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTA-CRIHGNI-- 685 (868)
Q Consensus 611 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a-~~~~~~~-- 685 (868)
+...|++++|...|+...+... .+...|..+..+|...|++++|.+.++++ ...| +..+|..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANP--QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCC--SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence 3456788888888887776432 34567788888888888888888888876 2333 45577777777 6677887
Q ss_pred HHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHHhcC
Q 047992 686 DLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLERENT 733 (868)
Q Consensus 686 ~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 733 (868)
+.|...++++++++|+++.++..++.+|...|++++|....+...+..
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 888888888888888888888888888888888888888776665443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.23 E-value=6.8e-06 Score=70.33 Aligned_cols=96 Identities=15% Similarity=0.093 Sum_probs=79.4
Q ss_pred hhHHHHHHHhhhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC--CchhHHHHHHH
Q 047992 637 IEHYSAMIDLYGRSGKLEEAMEFIEDM-PIE-PDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPG--DVLIQRLILQI 712 (868)
Q Consensus 637 ~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~-p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~--~~~~~~~l~~~ 712 (868)
...+..+...+.+.|++++|.+.+++. ... .+..+|..+...+...|+++.|...++++++++|+ ++..+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 344566777778888888888888776 223 35668888888999999999999999999999999 99999999999
Q ss_pred Hhhc-CCChhHHHHHHHHHhc
Q 047992 713 YAIC-GKPEDALKVRKLEREN 732 (868)
Q Consensus 713 y~~~-g~~~~a~~~~~~m~~~ 732 (868)
|... |++++|.+..+.....
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHhCCHHHHHHHHHHHhhc
Confidence 9999 9999999988766543
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.22 E-value=7.4e-07 Score=86.32 Aligned_cols=171 Identities=9% Similarity=-0.008 Sum_probs=108.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCC---CCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcc
Q 047992 538 MNSLIDTYAKSGNIVYSRTIFDGMSS---KDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLA 614 (868)
Q Consensus 538 ~~~Li~~y~k~g~~~~A~~~f~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 614 (868)
.+..+......|+++.|.+.++.... .....|..+...+...|++++|++.|++..+ ..|+...+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~------- 77 (198)
T 2fbn_A 7 HHHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALD--FFIHTEEWDDQ------- 77 (198)
T ss_dssp ---------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTTTCTTCCCH-------
T ss_pred ccchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HHhcccccchh-------
Confidence 44555566677888888888775442 2455778888888899999999999999887 44432211000
Q ss_pred CChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 047992 615 GMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAI 692 (868)
Q Consensus 615 g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~ 692 (868)
..++-. ..+ ....|..+..+|.+.|++++|.+.+++. ...| +..+|..+..++...|+++.|...+
T Consensus 78 -~~~~~~---~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~ 145 (198)
T 2fbn_A 78 -ILLDKK---KNI--------EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENL 145 (198)
T ss_dssp -HHHHHH---HHH--------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred -hHHHHH---HHH--------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHH
Confidence 000000 000 1245666777888888888888888876 3334 4568888999999999999999999
Q ss_pred HHHhccCCCCchhHHHHHHHHhhcCCChhHH-HHHHHH
Q 047992 693 ERLFDLEPGDVLIQRLILQIYAICGKPEDAL-KVRKLE 729 (868)
Q Consensus 693 ~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~-~~~~~m 729 (868)
+++++++|+++.++..++.++...|+.+++. ...+.|
T Consensus 146 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 146 YKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGM 183 (198)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988887776 344444
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.21 E-value=9e-05 Score=76.51 Aligned_cols=159 Identities=8% Similarity=-0.113 Sum_probs=119.3
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCCC---c-----e-ecHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCH----HHHHH
Q 047992 541 LIDTYAKSGNIVYSRTIFDGMSSKD---I-----I-TWNSLICGYVLHGFWHAALDLFDQMKSFGLK-PNR----GTFLS 606 (868)
Q Consensus 541 Li~~y~k~g~~~~A~~~f~~~~~~d---~-----~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~----~t~~~ 606 (868)
.+..+.+.|++++|...+++..... . . .+..+...+...|++++|++.|++....... ++. ..+..
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 4677889999999999999765321 1 1 2234566666778999999999999984322 221 25788
Q ss_pred HHHHhhccCChHHHHHHHHHhhhhcC----CCCC-hhHHHHHHHhhhhcCChHHHHHHHHhC-------CCCCC-HHHHH
Q 047992 607 IILAHSLAGMVDLGKKVFCSITECYQ----IIPM-IEHYSAMIDLYGRSGKLEEAMEFIEDM-------PIEPD-SSIWE 673 (868)
Q Consensus 607 ll~a~~~~g~~~~a~~~~~~m~~~~~----~~p~-~~~y~~lvd~l~r~g~~~eA~~~i~~~-------~~~p~-~~~w~ 673 (868)
+..++...|+.++|..+|+.+.+... ..|. ...|..+..+|.+.|++++|.+++++. ...+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 88899999999999999998875332 2222 236788899999999999999998876 11223 45888
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHHhccC
Q 047992 674 ALLTACRIHG-NIDLAVLAIERLFDLE 699 (868)
Q Consensus 674 ~ll~a~~~~~-~~~~a~~~~~~~~~l~ 699 (868)
.+..++...| +.+.|...+++++++.
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 8888999999 5799999999998743
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.21 E-value=1.8e-06 Score=96.07 Aligned_cols=200 Identities=13% Similarity=0.005 Sum_probs=113.2
Q ss_pred cHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCC-ChhHHHHHHHh
Q 047992 569 WNSLICGYVLHGFWHAALDLFDQMKSFGLKPN-RGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIP-MIEHYSAMIDL 646 (868)
Q Consensus 569 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lvd~ 646 (868)
|..+...+.+.|++++|++.|++.++ ..|+ ...+..+..++...|++++|..+|+...+. .| +...|..+..+
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~lg~~ 83 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL---DKKYIKGYYRRAAS 83 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS---CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCCHHHHHHHHHH
Confidence 33444455566777777777777776 4554 356666666777777777777777776652 23 34566677777
Q ss_pred hhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHH--HHhcCCHHHHHHHHH-----------HHhccCCCCchhHH----
Q 047992 647 YGRSGKLEEAMEFIEDM-PIEPD-SSIWEALLTA--CRIHGNIDLAVLAIE-----------RLFDLEPGDVLIQR---- 707 (868)
Q Consensus 647 l~r~g~~~eA~~~i~~~-~~~p~-~~~w~~ll~a--~~~~~~~~~a~~~~~-----------~~~~l~p~~~~~~~---- 707 (868)
|.+.|++++|.+.++++ ...|+ ...|..+..+ +...|+++.|...++ ++++++|+..+++.
T Consensus 84 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~ 163 (477)
T 1wao_1 84 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLEDGK 163 (477)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCSCCCGGGS
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccccccccccccc
Confidence 77777777777777765 22232 2244444444 666778888888888 77777776544321
Q ss_pred -------HHHHHHhhcCCChhHHH--HHHHHHhcCCCCCCcccEEEEcCEEEEEEeCCCCCCchHHHHHHHHhCCCc
Q 047992 708 -------LILQIYAICGKPEDALK--VRKLERENTRRNSFGQCWIEVKNLVYTFVTGGWSESYSDLLYSWLQNVPEN 775 (868)
Q Consensus 708 -------~l~~~y~~~g~~~~a~~--~~~~m~~~~~~k~~g~s~i~~~~~~~~f~~~d~~hp~~~~i~~~l~~~g~~ 775 (868)
.+...+...++..+..- +....++ -++++|....+......-..+.|| -|-+...+...|+..|..
T Consensus 164 itl~~l~~lie~l~~~~~l~e~~v~~L~~~a~e-il~~e~~~~~~~~~~~~~~~vigD-iHG~~~~l~~~l~~~~~~ 238 (477)
T 1wao_1 164 VTISFMKELMQWYKDQKKLHRKCAYQILVQVKE-VLSKLSTLVETTLKETEKITVCGD-THGQFYDLLNIFELNGLP 238 (477)
T ss_dssp CCHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHH-HHHTSCSEEEECCCSSCEEEEECB-CTTCHHHHHHHHHHHCCC
T ss_pred ccHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-HHccCCCeEEeecCCCcceEEEeC-CCCCHHHHHHHHHHcCCC
Confidence 22233445555554333 2222221 224455444333332233456666 577777777777766654
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.20 E-value=7.3e-06 Score=73.49 Aligned_cols=95 Identities=11% Similarity=-0.019 Sum_probs=69.3
Q ss_pred ChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHH
Q 047992 636 MIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIY 713 (868)
Q Consensus 636 ~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y 713 (868)
+...+..+...+...|++++|.+.+++. ...| +..+|..+...+...|+++.|...++++++++|+++.++..++.+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 3455666666777777777777777665 2233 3557777777777888888888888888888888888888888888
Q ss_pred hhcCCChhHHHHHHHHH
Q 047992 714 AICGKPEDALKVRKLER 730 (868)
Q Consensus 714 ~~~g~~~~a~~~~~~m~ 730 (868)
...|++++|.+..+...
T Consensus 88 ~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 88 LEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHH
Confidence 88888888877666554
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.20 E-value=2.8e-05 Score=80.34 Aligned_cols=161 Identities=7% Similarity=-0.100 Sum_probs=115.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCC---CCc------eecHHHHHHHHhcCChHHHHHHHHHHHHCCCC---CC--HHH
Q 047992 538 MNSLIDTYAKSGNIVYSRTIFDGMSS---KDI------ITWNSLICGYVLHGFWHAALDLFDQMKSFGLK---PN--RGT 603 (868)
Q Consensus 538 ~~~Li~~y~k~g~~~~A~~~f~~~~~---~d~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~---p~--~~t 603 (868)
+...+..|...|++++|.+.+++... .+. ..+..+...+...|++++|++.|++..+...+ +. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 34567778889999999888875432 111 12344556667788999999999998763211 22 236
Q ss_pred HHHHHHHhhccCChHHHHHHHHHhhhhcCCCCC-----hhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCC-------HH
Q 047992 604 FLSIILAHSLAGMVDLGKKVFCSITECYQIIPM-----IEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPD-------SS 670 (868)
Q Consensus 604 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~-------~~ 670 (868)
+..+...+...|+.++|..+|+...+.....|+ ...|..+..+|.+.|++++|.+++++. ...++ ..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 777888889999999999999988743322333 247788888999999999999998876 11111 55
Q ss_pred HHHHHHHHHHhcCCHHHH-HHHHHHHhcc
Q 047992 671 IWEALLTACRIHGNIDLA-VLAIERLFDL 698 (868)
Q Consensus 671 ~w~~ll~a~~~~~~~~~a-~~~~~~~~~l 698 (868)
++..+...+...|+.+.| ...+++++++
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 788888888999999999 7778888764
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.19 E-value=5.3e-05 Score=73.99 Aligned_cols=161 Identities=11% Similarity=-0.051 Sum_probs=126.4
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhcCCC-CCceecHHHHHHHHhcC----ChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 047992 533 SSLPVMNSLIDTYAKSGNIVYSRTIFDGMSS-KDIITWNSLICGYVLHG----FWHAALDLFDQMKSFGLKPNRGTFLSI 607 (868)
Q Consensus 533 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~-~d~~~~~~li~~~~~~g----~~~~A~~l~~~m~~~g~~p~~~t~~~l 607 (868)
.++.....|..+|...|++++|.+.|++... .+..++..+...|.. | +.++|++.|++..+.| +...+..+
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~L 91 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVL 91 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 3667788888899999999999999987653 467788888888877 6 8999999999998754 45566667
Q ss_pred HHHhhc----cCChHHHHHHHHHhhhhcCCCCC---hhHHHHHHHhhhh----cCChHHHHHHHHhC-CCCCCHHHHHHH
Q 047992 608 ILAHSL----AGMVDLGKKVFCSITECYQIIPM---IEHYSAMIDLYGR----SGKLEEAMEFIEDM-PIEPDSSIWEAL 675 (868)
Q Consensus 608 l~a~~~----~g~~~~a~~~~~~m~~~~~~~p~---~~~y~~lvd~l~r----~g~~~eA~~~i~~~-~~~p~~~~w~~l 675 (868)
...+.. .++.++|..+|+...+ ..|. ...+..|..+|.. .+++++|.+++++. ...+++..+..|
T Consensus 92 g~~y~~g~g~~~d~~~A~~~~~~A~~---~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~L 168 (212)
T 3rjv_A 92 ARVLVNRQAGATDVAHAITLLQDAAR---DSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWA 168 (212)
T ss_dssp HHHHTCGGGSSCCHHHHHHHHHHHTS---STTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHH
T ss_pred HHHHHcCCCCccCHHHHHHHHHHHHH---cCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 777776 7899999999998875 3342 6677788888887 88999999999988 333455566667
Q ss_pred HHHHHh------cCCHHHHHHHHHHHhccCC
Q 047992 676 LTACRI------HGNIDLAVLAIERLFDLEP 700 (868)
Q Consensus 676 l~a~~~------~~~~~~a~~~~~~~~~l~p 700 (868)
...+.. .+|.+.|...++++.+..+
T Consensus 169 g~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 169 GMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 776653 2399999999999998864
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.18 E-value=2.5e-06 Score=77.41 Aligned_cols=108 Identities=12% Similarity=0.017 Sum_probs=74.3
Q ss_pred HHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 047992 603 TFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACR 680 (868)
Q Consensus 603 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~ 680 (868)
.+..+...+...|++++|..+|+......+ .+...|..+..+|.+.|++++|.+.+++. ...| ++..|..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLDH--YDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhCC--ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 334444455566666666666665554211 23445666677777777777777777766 2333 3457788888899
Q ss_pred hcCCHHHHHHHHHHHhccCCCCchhHHHHHHH
Q 047992 681 IHGNIDLAVLAIERLFDLEPGDVLIQRLILQI 712 (868)
Q Consensus 681 ~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~ 712 (868)
..|+++.|...++++++++|+++........+
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 129 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 99999999999999999999998877665544
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.18 E-value=1.4e-05 Score=77.30 Aligned_cols=152 Identities=14% Similarity=0.088 Sum_probs=81.8
Q ss_pred hcCCHHHHHH---HHhcCCCCCceecHHHHHHHHhcCChHHHHHHHHHHHH----CCCCCCH-HHHHHHHHHhhccCChH
Q 047992 547 KSGNIVYSRT---IFDGMSSKDIITWNSLICGYVLHGFWHAALDLFDQMKS----FGLKPNR-GTFLSIILAHSLAGMVD 618 (868)
Q Consensus 547 k~g~~~~A~~---~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~~-~t~~~ll~a~~~~g~~~ 618 (868)
..|++++|.+ .+..-+......|+.+...|...|++++|++.|++..+ .|..|.. ..+..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4577777777 55443333455677777777777777777777777655 1222222 34555555666677777
Q ss_pred HHHHHHHHhhhhcCCCC-C----hhHHHHHHHhhhhcCChHHHHHHHHhC----CCCCCH----HHHHHHHHHHHhcCCH
Q 047992 619 LGKKVFCSITECYQIIP-M----IEHYSAMIDLYGRSGKLEEAMEFIEDM----PIEPDS----SIWEALLTACRIHGNI 685 (868)
Q Consensus 619 ~a~~~~~~m~~~~~~~p-~----~~~y~~lvd~l~r~g~~~eA~~~i~~~----~~~p~~----~~w~~ll~a~~~~~~~ 685 (868)
+|..+|+...+...-.| + ...+..+..++...|++++|.+.+++. +..++. .++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 77777666554322112 1 223455555566666666666655543 111111 1234445555556666
Q ss_pred HHHHHHHHHHhcc
Q 047992 686 DLAVLAIERLFDL 698 (868)
Q Consensus 686 ~~a~~~~~~~~~l 698 (868)
+.|...+++++++
T Consensus 164 ~~A~~~~~~al~~ 176 (203)
T 3gw4_A 164 LEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666655554
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.16 E-value=1.8e-05 Score=68.36 Aligned_cols=102 Identities=13% Similarity=0.067 Sum_probs=60.8
Q ss_pred HhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 047992 610 AHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDL 687 (868)
Q Consensus 610 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~ 687 (868)
.+...|++++|..+|+...... +.+...+..+..++.+.|++++|.+.+++. ...| +..+|..+..++...|+++.
T Consensus 13 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 90 (118)
T 1elw_A 13 KALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEE 90 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHH
Confidence 3334444444444444433321 112334444555555566666666665554 2223 45577777777888888888
Q ss_pred HHHHHHHHhccCCCCchhHHHHHHHH
Q 047992 688 AVLAIERLFDLEPGDVLIQRLILQIY 713 (868)
Q Consensus 688 a~~~~~~~~~l~p~~~~~~~~l~~~y 713 (868)
|...++++++++|+++..+..++.+.
T Consensus 91 A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 91 AKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 88888888888888887777776654
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.16 E-value=5.9e-06 Score=77.04 Aligned_cols=107 Identities=18% Similarity=-0.012 Sum_probs=75.9
Q ss_pred HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHH
Q 047992 602 GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPD-SSIWEALLTAC 679 (868)
Q Consensus 602 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~-~~~w~~ll~a~ 679 (868)
..+..+...+...|++++|+.+|+...+... .+...|..+..+|.+.|++++|++.+++. ...|+ ..+|..+..++
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAP--ANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 5566666777788888888888887766321 24556777777777888888888777776 33343 55777777777
Q ss_pred HhcCCHHHHHHHHHHHhccCCCCchhHHHHH
Q 047992 680 RIHGNIDLAVLAIERLFDLEPGDVLIQRLIL 710 (868)
Q Consensus 680 ~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~ 710 (868)
...|+++.|...++++++++|+++..+..++
T Consensus 90 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 7778888888888888888887777665554
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.14 E-value=9.2e-06 Score=70.23 Aligned_cols=95 Identities=12% Similarity=0.096 Sum_probs=84.3
Q ss_pred hhHHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHh
Q 047992 637 IEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYA 714 (868)
Q Consensus 637 ~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 714 (868)
...+..++..+.+.|++++|.+.+++. ...| +..+|..+...+...|+++.|...++++++++|+++..+..++.+|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 455777888899999999999999987 3334 66788999999999999999999999999999999999999999999
Q ss_pred hcCCChhHHHHHHHHHh
Q 047992 715 ICGKPEDALKVRKLERE 731 (868)
Q Consensus 715 ~~g~~~~a~~~~~~m~~ 731 (868)
..|++++|.+..+...+
T Consensus 84 ~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HTTCHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 99999999998876654
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.14 E-value=2.4e-05 Score=70.89 Aligned_cols=118 Identities=16% Similarity=0.084 Sum_probs=78.9
Q ss_pred CceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHH
Q 047992 565 DIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMI 644 (868)
Q Consensus 565 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv 644 (868)
+...|..+...+...|++++|++.|++..+ ..|+... ....|..+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~--------------------------------~~~~~~~~a 72 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG--LDATPQD--------------------------------QAVLHRNRA 72 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT--SCCCHHH--------------------------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HcccchH--------------------------------HHHHHHHHH
Confidence 445566666666677777777777777666 4454200 022344455
Q ss_pred HhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhc
Q 047992 645 DLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAIC 716 (868)
Q Consensus 645 d~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 716 (868)
.+|.+.|++++|.+.+++. ...| +..+|..+..++...|+++.|...++++++++|++...+..+..+....
T Consensus 73 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 146 (148)
T 2dba_A 73 ACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGPS 146 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCSC
T ss_pred HHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhhc
Confidence 5555666666666665554 2233 4567888888888999999999999999999999988888887775443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.14 E-value=7.9e-07 Score=98.52 Aligned_cols=93 Identities=9% Similarity=0.065 Sum_probs=76.3
Q ss_pred hhHHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHh
Q 047992 637 IEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYA 714 (868)
Q Consensus 637 ~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 714 (868)
...|..+..+|.+.|++++|++.++++ ...| +...|..+..++...|+++.|...++++++++|++..++..|+.+|.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 356778888899999999999999887 3444 45689999999999999999999999999999999999999999999
Q ss_pred hcCCChhHHH-HHHHH
Q 047992 715 ICGKPEDALK-VRKLE 729 (868)
Q Consensus 715 ~~g~~~~a~~-~~~~m 729 (868)
..|+++++.+ ..+.|
T Consensus 397 ~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 397 KAKEHNERDRRIYANM 412 (457)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999998876 34444
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.10 E-value=1.5e-05 Score=69.63 Aligned_cols=96 Identities=19% Similarity=0.309 Sum_probs=85.1
Q ss_pred hhHHHHHHHhhhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHh
Q 047992 637 IEHYSAMIDLYGRSGKLEEAMEFIEDM-PIE-PDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYA 714 (868)
Q Consensus 637 ~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~-p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 714 (868)
...+..+...+.+.|++++|.+.++++ ... .+..+|..+...+...|+++.|...++++++++|+++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 456778889999999999999999987 233 456789999999999999999999999999999999999999999999
Q ss_pred hcCCChhHHHHHHHHHhc
Q 047992 715 ICGKPEDALKVRKLEREN 732 (868)
Q Consensus 715 ~~g~~~~a~~~~~~m~~~ 732 (868)
..|++++|.+..+.+.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 999999999988776554
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.09 E-value=1.4e-05 Score=70.90 Aligned_cols=97 Identities=13% Similarity=0.067 Sum_probs=85.3
Q ss_pred ChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHH
Q 047992 636 MIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIY 713 (868)
Q Consensus 636 ~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y 713 (868)
+...+..+...+.+.|++++|.+.+++. ...| +..+|..+...+...|+++.|...++++++++|+++..+..++.+|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 3556777888899999999999999987 4555 5668999999999999999999999999999999999999999999
Q ss_pred hhcCCChhHHHHHHHHHhc
Q 047992 714 AICGKPEDALKVRKLEREN 732 (868)
Q Consensus 714 ~~~g~~~~a~~~~~~m~~~ 732 (868)
...|++++|.+..+...+.
T Consensus 95 ~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHh
Confidence 9999999999988766543
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.08 E-value=1.2e-05 Score=74.82 Aligned_cols=92 Identities=16% Similarity=-0.018 Sum_probs=41.4
Q ss_pred ecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHh
Q 047992 568 TWNSLICGYVLHGFWHAALDLFDQMKSFGLKPN-RGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDL 646 (868)
Q Consensus 568 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~ 646 (868)
.|..+...|...|++++|++.|++.++ +.|+ ...+..+..++...|++++|+..|+...+.. ..+...|..+..+
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALS--IAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD--PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 344444444455555555555555444 2332 2334444444444555555555554444321 1113344444444
Q ss_pred hhhcCChHHHHHHHHhC
Q 047992 647 YGRSGKLEEAMEFIEDM 663 (868)
Q Consensus 647 l~r~g~~~eA~~~i~~~ 663 (868)
|.+.|++++|.+.+++.
T Consensus 89 ~~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKG 105 (164)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHH
Confidence 55555555555544443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.07 E-value=2.1e-05 Score=71.32 Aligned_cols=97 Identities=11% Similarity=0.023 Sum_probs=85.5
Q ss_pred ChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHH
Q 047992 636 MIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPD----SSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLIL 710 (868)
Q Consensus 636 ~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~----~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~ 710 (868)
+...+..+...+.+.|++++|.+.+++. ...|+ ..+|..+...+...|+++.|...++++++++|+++..+..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 4556777888888999999999999887 66677 568888999999999999999999999999999999999999
Q ss_pred HHHhhcCCChhHHHHHHHHHhc
Q 047992 711 QIYAICGKPEDALKVRKLEREN 732 (868)
Q Consensus 711 ~~y~~~g~~~~a~~~~~~m~~~ 732 (868)
.+|...|++++|.+..+...+.
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHc
Confidence 9999999999999987766543
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.07 E-value=5.2e-06 Score=73.55 Aligned_cols=91 Identities=7% Similarity=-0.013 Sum_probs=76.5
Q ss_pred HHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCch-------hHHHH
Q 047992 639 HYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVL-------IQRLI 709 (868)
Q Consensus 639 ~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~-------~~~~l 709 (868)
.+.-+...+.+.|++++|++.+++. .+.| +..+|..+..++...|+++.|...++++++++|++.. +|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 3556778888899999999998887 4445 4668999999999999999999999999999998764 67778
Q ss_pred HHHHhhcCCChhHHHHHHHH
Q 047992 710 LQIYAICGKPEDALKVRKLE 729 (868)
Q Consensus 710 ~~~y~~~g~~~~a~~~~~~m 729 (868)
+++|...|++++|.+..+..
T Consensus 90 g~~~~~~~~~~~A~~~~~ka 109 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRS 109 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999976543
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.07 E-value=4.3e-05 Score=73.71 Aligned_cols=156 Identities=14% Similarity=0.042 Sum_probs=107.0
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---------CCceecHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-
Q 047992 534 SLPVMNSLIDTYAKSGNIVYSRTIFDGMSS---------KDIITWNSLICGYVLHGFWHAALDLFDQMKSF----GLKP- 599 (868)
Q Consensus 534 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---------~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p- 599 (868)
...++..+...|...|++++|...|++... ....+++.+...|...|++++|++.|++..+. +-.|
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 104 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPL 104 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHH
Confidence 344566777777888888888777775432 12346777888888899999999888887652 1122
Q ss_pred C-HHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCC----hhHHHHHHHhhhhcCChHHHHHHHHhCCCCCCHHHHHH
Q 047992 600 N-RGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPM----IEHYSAMIDLYGRSGKLEEAMEFIEDMPIEPDSSIWEA 674 (868)
Q Consensus 600 ~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~y~~lvd~l~r~g~~~eA~~~i~~~~~~p~~~~w~~ 674 (868)
. ...+..+...+...|++++|..+|+...+...-.++ ...+..+..++.+.|++++|.+.+++
T Consensus 105 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~------------ 172 (203)
T 3gw4_A 105 AASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLR------------ 172 (203)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHH------------
Confidence 1 234666677788889999999999887653221222 22357788899999999999999886
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCC
Q 047992 675 LLTACRIHGNIDLAVLAIERLFDLEPG 701 (868)
Q Consensus 675 ll~a~~~~~~~~~a~~~~~~~~~l~p~ 701 (868)
.+......|+......+...+-...|.
T Consensus 173 al~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (203)
T 3gw4_A 173 ARDIFAELEDSEAVNELMTRLNGLEHH 199 (203)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHcCCHHHHHHHHhcccchhhc
Confidence 345556667766666666666666554
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.06 E-value=1.3e-05 Score=70.69 Aligned_cols=77 Identities=13% Similarity=0.034 Sum_probs=56.6
Q ss_pred hHHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccC------CCCchhHHHH
Q 047992 638 EHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLE------PGDVLIQRLI 709 (868)
Q Consensus 638 ~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~------p~~~~~~~~l 709 (868)
..|..+..++.+.|++++|.+.+++. ...| +...|..+..++...|+++.|...++++++++ |++......+
T Consensus 39 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l 118 (126)
T 3upv_A 39 RGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLY 118 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHH
Confidence 44555566666666666666666655 2334 35578888888899999999999999999999 8888887777
Q ss_pred HHHHh
Q 047992 710 LQIYA 714 (868)
Q Consensus 710 ~~~y~ 714 (868)
..+..
T Consensus 119 ~~~~~ 123 (126)
T 3upv_A 119 YKASQ 123 (126)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76543
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.06 E-value=2e-05 Score=73.17 Aligned_cols=124 Identities=15% Similarity=0.063 Sum_probs=54.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhh
Q 047992 570 NSLICGYVLHGFWHAALDLFDQMKSFGLKP-NRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYG 648 (868)
Q Consensus 570 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~ 648 (868)
..+...+...|++++|+..|++..+ ..| +...+..+..++...|++++|..+|+...+.. +.+...|..+..++.
T Consensus 17 ~~~a~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 17 KTQANDYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHH
Confidence 3333444444444444444444444 222 22333344444444444444444444444321 112334444555555
Q ss_pred hcCChHHHHHHHHhC-CCCC-CHHHHHH--HHHHHHhcCCHHHHHHHHHHHhc
Q 047992 649 RSGKLEEAMEFIEDM-PIEP-DSSIWEA--LLTACRIHGNIDLAVLAIERLFD 697 (868)
Q Consensus 649 r~g~~~eA~~~i~~~-~~~p-~~~~w~~--ll~a~~~~~~~~~a~~~~~~~~~ 697 (868)
+.|++++|.+.++++ ...| +...|.. ++..+...|+++.|...+++..+
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 555555555555544 2222 2223322 22224455666666666665543
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=6.8e-05 Score=77.54 Aligned_cols=189 Identities=10% Similarity=-0.012 Sum_probs=123.4
Q ss_pred HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC--CHHHHHHHHhcCC---CCCceecHHHHHHHHhcCC-hHHHHHHHH
Q 047992 517 NKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSG--NIVYSRTIFDGMS---SKDIITWNSLICGYVLHGF-WHAALDLFD 590 (868)
Q Consensus 517 ~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g--~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~-~~~A~~l~~ 590 (868)
+........++.. .+.+..+++.-...+.+.| .++++...++++. ++|..+|+--.-.+...|. .+++++.++
T Consensus 91 ~~EL~~~~~~L~~-~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~ 169 (331)
T 3dss_A 91 KAELGFLESCLRV-NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD 169 (331)
T ss_dssp HHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 3444444444442 2336677777666777777 4788888888765 5677788887777777787 588999999
Q ss_pred HHHHCCCCC-CHHHHHHHHHHhhcc--------------CChHHHHHHHHHhhhhcCCCCC-hhHHHHHHHhhhhc----
Q 047992 591 QMKSFGLKP-NRGTFLSIILAHSLA--------------GMVDLGKKVFCSITECYQIIPM-IEHYSAMIDLYGRS---- 650 (868)
Q Consensus 591 ~m~~~g~~p-~~~t~~~ll~a~~~~--------------g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lvd~l~r~---- 650 (868)
++++ ..| |...|........+. +.++++++++...... .|+ ...|.-+-.++.+.
T Consensus 170 ~~I~--~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~---~P~d~SaW~Y~r~ll~~~~~~~ 244 (331)
T 3dss_A 170 SLIT--RNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT---DPNDQSAWFYHRWLLGAGSGRC 244 (331)
T ss_dssp HHHH--HCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHSSSCGG
T ss_pred HHHH--HCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccCcc
Confidence 9888 455 445555544444433 4577888888877763 333 23343333444444
Q ss_pred -------CChHHHHHHHHhC-CCCCCHHHHHHHHHHHH-----hcCCHHHHHHHHHHHhccCCCCchhHHHHHHH
Q 047992 651 -------GKLEEAMEFIEDM-PIEPDSSIWEALLTACR-----IHGNIDLAVLAIERLFDLEPGDVLIQRLILQI 712 (868)
Q Consensus 651 -------g~~~eA~~~i~~~-~~~p~~~~w~~ll~a~~-----~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~ 712 (868)
+.++++++.++++ ..+||. .|.-+..+.. ..+..+.....+.++.++||-..+.|.-|..-
T Consensus 245 ~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~ 318 (331)
T 3dss_A 245 ELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 318 (331)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 5678888888887 566776 4653333321 34677788888889999999888888776543
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=0.00014 Score=75.54 Aligned_cols=208 Identities=10% Similarity=-0.013 Sum_probs=139.4
Q ss_pred HHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcC-CHHHHHHHHhcCC---CCCceecHHHHHHHHhc-C-ChHHHHHHHH
Q 047992 518 KVKEIHGCVLRRSLES-SLPVMNSLIDTYAKSG-NIVYSRTIFDGMS---SKDIITWNSLICGYVLH-G-FWHAALDLFD 590 (868)
Q Consensus 518 ~~~~i~~~~~~~~~~~-~~~~~~~Li~~y~k~g-~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~-g-~~~~A~~l~~ 590 (868)
.+.++...++. +.| +..+++.-...+...| .++++.+.++.+. +++...|+--.-.+... + ++++++++++
T Consensus 72 ~AL~lt~~~L~--~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~ 149 (349)
T 3q7a_A 72 RALELTEIIVR--MNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIH 149 (349)
T ss_dssp HHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHH
T ss_pred HHHHHHHHHHH--hCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 34444444444 333 4455666666666677 5888888888765 56677888877777766 6 8889999999
Q ss_pred HHHHCCCCC-CHHHHHHHHHHhhccCChH--------HHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCC-------hH
Q 047992 591 QMKSFGLKP-NRGTFLSIILAHSLAGMVD--------LGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGK-------LE 654 (868)
Q Consensus 591 ~m~~~g~~p-~~~t~~~ll~a~~~~g~~~--------~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~-------~~ 654 (868)
++.+ ..| |...|..-.....+.|..+ +++++++.+.+.. .-+...|.-...++.+.|+ ++
T Consensus 150 k~L~--~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d--p~N~SAW~~R~~lL~~l~~~~~~~~~~~ 225 (349)
T 3q7a_A 150 GSLL--PDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD--GRNNSAWGWRWYLRVSRPGAETSSRSLQ 225 (349)
T ss_dssp HHTS--SCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHTTSTTCCCCHHHHH
T ss_pred HHHH--hCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccccchHHHH
Confidence 9887 455 4466666555555556665 8888888888742 2234455555666767665 78
Q ss_pred HHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHhccC------CCCchhH
Q 047992 655 EAMEFIEDM-PIE-PDSSIWEALLTACRIHGNI--------------------DLAVLAIERLFDLE------PGDVLIQ 706 (868)
Q Consensus 655 eA~~~i~~~-~~~-p~~~~w~~ll~a~~~~~~~--------------------~~a~~~~~~~~~l~------p~~~~~~ 706 (868)
+++++++++ ... -|...|+-+-+.+...|+. +.-...+..++... +.++-+.
T Consensus 226 eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al 305 (349)
T 3q7a_A 226 DELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLAL 305 (349)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHH
Confidence 999998877 333 4677998888877766543 22333333333332 4667788
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHh
Q 047992 707 RLILQIYAICGKPEDALKVRKLERE 731 (868)
Q Consensus 707 ~~l~~~y~~~g~~~~a~~~~~~m~~ 731 (868)
..|+.+|...|+.++|.++.+.+.+
T Consensus 306 ~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 306 EYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 8999999999999999999988864
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.01 E-value=3.2e-06 Score=73.71 Aligned_cols=80 Identities=14% Similarity=0.104 Sum_probs=48.4
Q ss_pred cCChHHHHHHHHhC-CC---CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHH
Q 047992 650 SGKLEEAMEFIEDM-PI---EPDS-SIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALK 724 (868)
Q Consensus 650 ~g~~~eA~~~i~~~-~~---~p~~-~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~ 724 (868)
.|++++|++.+++. .. .|+. .+|..|...+...|+++.|...++++++++|+++.++..++.+|...|++++|.+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 45555566655554 23 2332 3666666666667777777777777777777777777777777777777777776
Q ss_pred HHHHH
Q 047992 725 VRKLE 729 (868)
Q Consensus 725 ~~~~m 729 (868)
..+..
T Consensus 83 ~~~~a 87 (117)
T 3k9i_A 83 LLLKI 87 (117)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.01 E-value=1.7e-05 Score=69.96 Aligned_cols=96 Identities=18% Similarity=0.100 Sum_probs=84.7
Q ss_pred hhHHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHh
Q 047992 637 IEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYA 714 (868)
Q Consensus 637 ~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 714 (868)
...+..+...+...|++++|.+.+++. ...| +..+|..+...+...|+++.|...++++++++|+++..+..++.+|.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 456777888999999999999999987 3334 56789999999999999999999999999999999999999999999
Q ss_pred hcCCChhHHHHHHHHHhc
Q 047992 715 ICGKPEDALKVRKLEREN 732 (868)
Q Consensus 715 ~~g~~~~a~~~~~~m~~~ 732 (868)
..|++++|.+..+...+.
T Consensus 92 ~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHhc
Confidence 999999999988766544
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.99 E-value=9.7e-06 Score=73.37 Aligned_cols=117 Identities=9% Similarity=-0.022 Sum_probs=73.6
Q ss_pred ecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCC-ChhHHHHHHHh
Q 047992 568 TWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIP-MIEHYSAMIDL 646 (868)
Q Consensus 568 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lvd~ 646 (868)
.|......+...|++++|++.|++.++ +.|+...- ++ ....| +...|.-+..+
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~--l~p~~~~~--------------~a----------~~~~~~~a~a~~n~g~a 66 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAME--ISHTMPPE--------------EA----------FDHAGFDAFCHAGLAEA 66 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH--HHTTSCTT--------------SC----------CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh--hCCCCcch--------------hh----------hhhccchHHHHHHHHHH
Confidence 355566667777888888888888877 55551000 00 00000 01134444444
Q ss_pred hhhcCChHHHHHHHHhC--------CCCCCHH-HH----HHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHH
Q 047992 647 YGRSGKLEEAMEFIEDM--------PIEPDSS-IW----EALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLIL 710 (868)
Q Consensus 647 l~r~g~~~eA~~~i~~~--------~~~p~~~-~w----~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~ 710 (868)
+.+.|++++|++.+++. ++.|+.. .| .....++...|+++.|...++++++++|++.+.+--+.
T Consensus 67 l~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~ 143 (159)
T 2hr2_A 67 LAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKE 143 (159)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHH
T ss_pred HHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 55555555555444443 3478765 88 88999999999999999999999999999877655443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=9e-05 Score=83.83 Aligned_cols=168 Identities=10% Similarity=-0.021 Sum_probs=135.1
Q ss_pred CHHHHHHHHhcCC---CCCceecHHHHHHHHhcCC----------hHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccC
Q 047992 550 NIVYSRTIFDGMS---SKDIITWNSLICGYVLHGF----------WHAALDLFDQMKSFGLKPN-RGTFLSIILAHSLAG 615 (868)
Q Consensus 550 ~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g 615 (868)
.-++|.+.++++. +.+...|+.--..+...|+ ++++++.++++.+ ..|. ...|..-..+..+.|
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~--~~pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR--VNPKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcc
Confidence 3466778777654 4566788887777777777 8999999999998 5664 477877777888888
Q ss_pred --ChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcC-ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc--------
Q 047992 616 --MVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSG-KLEEAMEFIEDM-PIEP-DSSIWEALLTACRIH-------- 682 (868)
Q Consensus 616 --~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g-~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~-------- 682 (868)
++++++.+++.+.+.. .-+...|.--..++.+.| .+++|.++++++ ...| |...|+.........
T Consensus 122 ~~~~~~el~~~~k~l~~d--~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhc--cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc
Confidence 6699999999998842 234455666677788888 899999999998 4444 677999998887653
Q ss_pred ------CCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChh
Q 047992 683 ------GNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPED 721 (868)
Q Consensus 683 ------~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~ 721 (868)
+.++.+...++++++++|+|.++|..+.+++...|+.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 557999999999999999999999999999999999666
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.94 E-value=1.8e-05 Score=73.40 Aligned_cols=60 Identities=12% Similarity=-0.009 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHH
Q 047992 670 SIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLE 729 (868)
Q Consensus 670 ~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 729 (868)
.+|..+..++...|+++.|...++++++++|+++.+|..++.+|...|++++|....+..
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a 123 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLL 123 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHH
Confidence 366666666777777777777777777777777777777777777777777777765544
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.92 E-value=2.3e-05 Score=70.92 Aligned_cols=61 Identities=11% Similarity=-0.033 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcc-------CCCCchhH----HHHHHHHhhcCCChhHHHHHHHHH
Q 047992 670 SIWEALLTACRIHGNIDLAVLAIERLFDL-------EPGDVLIQ----RLILQIYAICGKPEDALKVRKLER 730 (868)
Q Consensus 670 ~~w~~ll~a~~~~~~~~~a~~~~~~~~~l-------~p~~~~~~----~~l~~~y~~~g~~~~a~~~~~~m~ 730 (868)
..|..+..++...|+++.|...+++++++ +|+++.+| ..++..|...|++++|....+...
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 38999999999999999999999999999 99999999 999999999999999999776553
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.92 E-value=3.8e-05 Score=65.55 Aligned_cols=103 Identities=17% Similarity=0.113 Sum_probs=65.1
Q ss_pred CCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHH
Q 047992 564 KDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAM 643 (868)
Q Consensus 564 ~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~l 643 (868)
.+...|..+...+...|++++|+..|++..+ ..|+. ...+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~-----------------------------------~~~~~~~ 46 (112)
T 2kck_A 4 QNPEEYYLEGVLQYDAGNYTESIDLFEKAIQ--LDPEE-----------------------------------SKYWLMK 46 (112)
T ss_dssp SSTTGGGGHHHHHHSSCCHHHHHHHHHHHHH--HCCCC-----------------------------------HHHHHHH
T ss_pred CcHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--hCcCC-----------------------------------HHHHHHH
Confidence 3455666666677777777777777777665 23322 2233444
Q ss_pred HHhhhhcCChHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhc-CCHHHHHHHHHHHhccCCCCc
Q 047992 644 IDLYGRSGKLEEAMEFIEDM-PIEP---DSSIWEALLTACRIH-GNIDLAVLAIERLFDLEPGDV 703 (868)
Q Consensus 644 vd~l~r~g~~~eA~~~i~~~-~~~p---~~~~w~~ll~a~~~~-~~~~~a~~~~~~~~~l~p~~~ 703 (868)
..++.+.|++++|.+.+++. ...| +..+|..+...+... |+.+.|...++++++..|.++
T Consensus 47 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 47 GKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 55555556666666555554 2233 355777777777778 888888888888888888664
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.91 E-value=1.2e-05 Score=89.29 Aligned_cols=116 Identities=13% Similarity=-0.012 Sum_probs=98.6
Q ss_pred HHhhccCChHHHHHHHHHhhhhcCCCC-ChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCH
Q 047992 609 LAHSLAGMVDLGKKVFCSITECYQIIP-MIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPD-SSIWEALLTACRIHGNI 685 (868)
Q Consensus 609 ~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~-~~~w~~ll~a~~~~~~~ 685 (868)
..+...|++++|..+|+...+. .| +...|..+..+|.+.|++++|++.+++. ...|+ ..+|..+..++...|++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 3566789999999999998874 34 3678899999999999999999999987 45554 56899999999999999
Q ss_pred HHHHHHHHHHhccCCCCchhHHHHHHH--HhhcCCChhHHHHHH
Q 047992 686 DLAVLAIERLFDLEPGDVLIQRLILQI--YAICGKPEDALKVRK 727 (868)
Q Consensus 686 ~~a~~~~~~~~~l~p~~~~~~~~l~~~--y~~~g~~~~a~~~~~ 727 (868)
+.|+..++++++++|+++.++..++.+ |...|++++|.+..+
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999998 889999999999865
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.91 E-value=2e-05 Score=69.74 Aligned_cols=97 Identities=15% Similarity=0.056 Sum_probs=41.4
Q ss_pred HHhhccCChHHHHHHHHHhhhhcCCCCC-hhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhc
Q 047992 609 LAHSLAGMVDLGKKVFCSITECYQIIPM-IEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPD----SSIWEALLTACRIH 682 (868)
Q Consensus 609 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~----~~~w~~ll~a~~~~ 682 (868)
..+...|++++|...|+...+..+-.|. ...+..+..++.+.|++++|.+.+++. ...|+ ..++..+..++...
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~ 89 (129)
T 2xev_A 10 FDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGE 89 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHc
Confidence 3444455555555555554443221111 023334444444445555544444443 11121 22344444444444
Q ss_pred CCHHHHHHHHHHHhccCCCCchh
Q 047992 683 GNIDLAVLAIERLFDLEPGDVLI 705 (868)
Q Consensus 683 ~~~~~a~~~~~~~~~l~p~~~~~ 705 (868)
|+++.|...++++++..|+++..
T Consensus 90 g~~~~A~~~~~~~~~~~p~~~~~ 112 (129)
T 2xev_A 90 GKNTEAQQTLQQVATQYPGSDAA 112 (129)
T ss_dssp TCHHHHHHHHHHHHHHSTTSHHH
T ss_pred CCHHHHHHHHHHHHHHCCCChHH
Confidence 44555554444444444444433
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.88 E-value=4.4e-05 Score=68.23 Aligned_cols=108 Identities=9% Similarity=-0.060 Sum_probs=67.1
Q ss_pred HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 047992 602 GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTAC 679 (868)
Q Consensus 602 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~ 679 (868)
..+..+...+...|++++|..+|+...+.. +.+...|..+..++.+.|++++|.+.+++. ...| +..+|..+..++
T Consensus 10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 10 QELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 344444444445555555555555444321 112344555666666677777777666665 2233 455888888888
Q ss_pred HhcCCHHHHHHHHHHHhccCCC-----CchhHHHHHH
Q 047992 680 RIHGNIDLAVLAIERLFDLEPG-----DVLIQRLILQ 711 (868)
Q Consensus 680 ~~~~~~~~a~~~~~~~~~l~p~-----~~~~~~~l~~ 711 (868)
...|+++.|...++++++++|+ +......+..
T Consensus 88 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~ 124 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI 124 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHH
Confidence 9999999999999999999987 4444444443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00044 Score=71.44 Aligned_cols=155 Identities=13% Similarity=0.045 Sum_probs=114.1
Q ss_pred HHHHHHHHhcCC---CCCceecHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCC-hHHHHHH
Q 047992 551 IVYSRTIFDGMS---SKDIITWNSLICGYVLHGF--WHAALDLFDQMKSFGLKP-NRGTFLSIILAHSLAGM-VDLGKKV 623 (868)
Q Consensus 551 ~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~-~~~a~~~ 623 (868)
++++...++.+. +++..+|+--.-.+...|. ++++++.++++.+ ..| |...|..--....+.|. +++++++
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~--~dprNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLE--ADERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 567777777654 6788899988888888884 8999999999999 456 55777777777778888 5999999
Q ss_pred HHHhhhhcCCCCChhHHHHHHHhhhhc--------------CChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhc-----
Q 047992 624 FCSITECYQIIPMIEHYSAMIDLYGRS--------------GKLEEAMEFIEDM-PI-EPDSSIWEALLTACRIH----- 682 (868)
Q Consensus 624 ~~~m~~~~~~~p~~~~y~~lvd~l~r~--------------g~~~eA~~~i~~~-~~-~p~~~~w~~ll~a~~~~----- 682 (868)
+..+.+...- +...|.-...++.+. +.++++++++++. .. +-|..+|+-+-+.....
T Consensus 168 ~~~~I~~~p~--N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 168 TDSLITRNFS--NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHHCSC--CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHHCCC--CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccc
Confidence 9999885332 333344444444433 5689999999887 33 34677998777766554
Q ss_pred ------CCHHHHHHHHHHHhccCCCCchhHHHHHH
Q 047992 683 ------GNIDLAVLAIERLFDLEPGDVLIQRLILQ 711 (868)
Q Consensus 683 ------~~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 711 (868)
+-++.+...++++++++|++. +.+++-
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~~--w~l~~~ 278 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPENK--WCLLTI 278 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTCH--HHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhCcccc--hHHHHH
Confidence 458999999999999999984 444443
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=97.87 E-value=5.8e-05 Score=77.39 Aligned_cols=103 Identities=11% Similarity=-0.018 Sum_probs=71.8
Q ss_pred HHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCC-ChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHH
Q 047992 601 RGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIP-MIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPD-SSIWEALLT 677 (868)
Q Consensus 601 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~-~~~w~~ll~ 677 (868)
...+..+...+...|++++|..+|+...+. .| +...|..+..+|.+.|++++|.+.+++. ...|+ ...|..+..
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 355666667777778888888888777663 23 4556777777777777777777777775 44454 446777777
Q ss_pred HHHhcCCHHHHHHHHHHHhccCCCCchhH
Q 047992 678 ACRIHGNIDLAVLAIERLFDLEPGDVLIQ 706 (868)
Q Consensus 678 a~~~~~~~~~a~~~~~~~~~l~p~~~~~~ 706 (868)
++...|+++.|...++++++++|+++..+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 109 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNF 109 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhH
Confidence 77777777777777777777777665443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.87 E-value=3.2e-05 Score=68.20 Aligned_cols=114 Identities=11% Similarity=-0.016 Sum_probs=65.9
Q ss_pred ecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHh
Q 047992 568 TWNSLICGYVLHGFWHAALDLFDQMKSFGLKPN-RGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDL 646 (868)
Q Consensus 568 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~ 646 (868)
.|..+...+...|++++|+..|++..+. .|+ ...+..+...+...|++++|..+|+...+..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------------- 68 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG--------------- 68 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc---------------
Confidence 4555555666666666666666666552 232 2333344444444444444444444433311
Q ss_pred hhhcCChHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhc
Q 047992 647 YGRSGKLEEAMEFIEDMPI-EPD----SSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAIC 716 (868)
Q Consensus 647 l~r~g~~~eA~~~i~~~~~-~p~----~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 716 (868)
|. .++ ..+|..+..++...|+++.|...+++++++.| ++.....+..++...
T Consensus 69 -----------------~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 125 (131)
T 1elr_A 69 -----------------RENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKIL 125 (131)
T ss_dssp -----------------HHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_pred -----------------cccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence 11 122 44677777778888888888888888888888 566666666655443
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.86 E-value=1.3e-05 Score=77.39 Aligned_cols=116 Identities=12% Similarity=0.041 Sum_probs=64.5
Q ss_pred hchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCc----------------eecHH
Q 047992 511 AYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMSS---KDI----------------ITWNS 571 (868)
Q Consensus 511 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~d~----------------~~~~~ 571 (868)
..++.++.+++.+...... .......+..+...|.+.|++++|...|++... .+. ..|..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (198)
T 2fbn_A 15 ENLYFQGAKKSIYDYTDEE-KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLN 93 (198)
T ss_dssp -------CCCSGGGCCHHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccCchhhCCHHH-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHH
Confidence 3455555555555432211 001234567788899999999999999997542 333 45666
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCChHHHHHHHHHhhh
Q 047992 572 LICGYVLHGFWHAALDLFDQMKSFGLKPN-RGTFLSIILAHSLAGMVDLGKKVFCSITE 629 (868)
Q Consensus 572 li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 629 (868)
+...|...|++++|+..|++.++ +.|+ ...+..+..++...|++++|..+|+...+
T Consensus 94 la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 94 LATCYNKNKDYPKAIDHASKVLK--IDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 66666666677777766666666 3443 24444444455555555555555554443
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00085 Score=69.65 Aligned_cols=173 Identities=13% Similarity=0.035 Sum_probs=100.7
Q ss_pred hHHHHHHHHHHhc-C-CHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChH--------HHHHHHHHHHHCCCCC-CH
Q 047992 536 PVMNSLIDTYAKS-G-NIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWH--------AALDLFDQMKSFGLKP-NR 601 (868)
Q Consensus 536 ~~~~~Li~~y~k~-g-~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~--------~A~~l~~~m~~~g~~p-~~ 601 (868)
.+++.-...+.+. + +.+++.+.++++. ++|..+|+--.-.+.+.|..+ ++++.++++++ ..| |.
T Consensus 124 ~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~--~dp~N~ 201 (349)
T 3q7a_A 124 QVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLR--VDGRNN 201 (349)
T ss_dssp HHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH--HCTTCH
T ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHH--hCCCCH
Confidence 3344333333333 4 4556666665554 344555655544444444444 77788888777 344 44
Q ss_pred HHHHHHHHHhhccCC-------hHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCC--------------------hH
Q 047992 602 GTFLSIILAHSLAGM-------VDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGK--------------------LE 654 (868)
Q Consensus 602 ~t~~~ll~a~~~~g~-------~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~--------------------~~ 654 (868)
..|........+.|. +++++++++.+.....- +...|.-+-.++.+.|+ +.
T Consensus 202 SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~--n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (349)
T 3q7a_A 202 SAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPH--NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIE 279 (349)
T ss_dssp HHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------
T ss_pred HHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHhcCCCcccccccccccccccccccch
Confidence 666666666666654 57777777776653222 22334444444554443 34
Q ss_pred HHHHHHHhCC-C-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh-ccCCCCchhHHHHHHH
Q 047992 655 EAMEFIEDMP-I-------EPDSSIWEALLTACRIHGNIDLAVLAIERLF-DLEPGDVLIQRLILQI 712 (868)
Q Consensus 655 eA~~~i~~~~-~-------~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~-~l~p~~~~~~~~l~~~ 712 (868)
+..++..++. . .+.+..+.-|...+...|+.+.|.++++.+. +.||-...++...+..
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~~ 346 (349)
T 3q7a_A 280 TVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRRE 346 (349)
T ss_dssp ------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred hHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHHh
Confidence 4555555551 1 2566788889999999999999999999997 7899877777665543
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.86 E-value=2.9e-05 Score=66.36 Aligned_cols=90 Identities=11% Similarity=0.058 Sum_probs=76.1
Q ss_pred ChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC------chhHH
Q 047992 636 MIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGD------VLIQR 707 (868)
Q Consensus 636 ~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~------~~~~~ 707 (868)
+.+.+..+...+.+.|++++|.+.+++. ...| +..+|..+..++...|+++.|...++++++++|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 3455677788888999999999998887 3344 56689999999999999999999999999999999 88889
Q ss_pred HHHHHHhhcCCChhHHHH
Q 047992 708 LILQIYAICGKPEDALKV 725 (868)
Q Consensus 708 ~l~~~y~~~g~~~~a~~~ 725 (868)
.++.+|...|++++|.+.
T Consensus 83 ~~~~~~~~~~~~~~a~~~ 100 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVE 100 (111)
T ss_dssp HHHHHHHHHHCCCCCSSS
T ss_pred HHHHHHHHHHhHhhhHhH
Confidence 999999999988877553
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.85 E-value=3.2e-05 Score=67.71 Aligned_cols=66 Identities=15% Similarity=0.136 Sum_probs=44.0
Q ss_pred hHHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 047992 638 EHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDV 703 (868)
Q Consensus 638 ~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~ 703 (868)
..|..+..++.+.|++++|++.+++. ...| +...|..|..++...|+++.|...++++++++|+++
T Consensus 52 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 52 EAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCC
Confidence 34555566666667777777776665 3344 455788888888889999999999999999999764
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.85 E-value=3.8e-05 Score=67.73 Aligned_cols=95 Identities=8% Similarity=0.028 Sum_probs=80.2
Q ss_pred hHHHHHHHhhhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC-------chhHHH
Q 047992 638 EHYSAMIDLYGRSGKLEEAMEFIEDM-PIE-PDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGD-------VLIQRL 708 (868)
Q Consensus 638 ~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~-p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~-------~~~~~~ 708 (868)
..+..+...+...|++++|.+.+++. ... .+..+|..+...+...|+++.|...+++++++.|++ +.++..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 44666777888888999998888876 223 356688888889999999999999999999999887 888999
Q ss_pred HHHHHhhcCCChhHHHHHHHHHhc
Q 047992 709 ILQIYAICGKPEDALKVRKLEREN 732 (868)
Q Consensus 709 l~~~y~~~g~~~~a~~~~~~m~~~ 732 (868)
++.+|...|++++|.+..+...+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 999999999999999988776553
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.84 E-value=6.9e-05 Score=66.18 Aligned_cols=60 Identities=10% Similarity=-0.071 Sum_probs=34.8
Q ss_pred ecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhh
Q 047992 568 TWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITE 629 (868)
Q Consensus 568 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 629 (868)
.|..+...+.+.|++++|++.|++.++ +.|+. ..+..+..++...|++++|+..|+...+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~ 70 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVE 70 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344555566666666666666666666 45543 4445555555666666666666655443
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.84 E-value=2.9e-05 Score=82.05 Aligned_cols=145 Identities=10% Similarity=-0.060 Sum_probs=81.1
Q ss_pred ecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhh
Q 047992 568 TWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLY 647 (868)
Q Consensus 568 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l 647 (868)
.|..+...+...|++++|+..|++.+. ..|+... +...|..+++...+. ...|..+..+|
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~~~ 240 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHHHH
Confidence 355666777788899999999998887 5666542 233444444443332 12567788888
Q ss_pred hhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHh-hcCCChhHHH
Q 047992 648 GRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYA-ICGKPEDALK 724 (868)
Q Consensus 648 ~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~-~~g~~~~a~~ 724 (868)
.+.|++++|.+.+++. ...| +...|..+..++...|+++.|+..++++++++|+++.++..|+.+.. ..+..+++.+
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999988877 3444 45688888899999999999999999999999999999999998844 4566777777
Q ss_pred HHHHHHhc
Q 047992 725 VRKLEREN 732 (868)
Q Consensus 725 ~~~~m~~~ 732 (868)
+.+.|-+.
T Consensus 321 ~~~~~l~~ 328 (338)
T 2if4_A 321 MYKGIFKG 328 (338)
T ss_dssp --------
T ss_pred HHHHhhCC
Confidence 77666443
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=97.84 E-value=5.1e-05 Score=80.10 Aligned_cols=94 Identities=13% Similarity=0.113 Sum_probs=62.8
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCC---------------ceecHHHHHHHHhcCChHHHHHHHHHHHHC
Q 047992 534 SLPVMNSLIDTYAKSGNIVYSRTIFDGMS---SKD---------------IITWNSLICGYVLHGFWHAALDLFDQMKSF 595 (868)
Q Consensus 534 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d---------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 595 (868)
+...+..+...|.+.|++++|...|++.. +.+ ...|+.+...|...|++++|++.|++.++
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~- 224 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE- 224 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Confidence 45678889999999999999999999764 233 35677777777777777777777777776
Q ss_pred CCCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhh
Q 047992 596 GLKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITE 629 (868)
Q Consensus 596 g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 629 (868)
+.|+. ..+..+..++...|++++|+..|+...+
T Consensus 225 -~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 258 (336)
T 1p5q_A 225 -LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 258 (336)
T ss_dssp -HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44532 4444444455555555555555554443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.83 E-value=0.0001 Score=80.80 Aligned_cols=186 Identities=8% Similarity=-0.057 Sum_probs=129.6
Q ss_pred HHHHhcCCHHHHHHHHhcCCCC-----Cc---------------eecHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCH
Q 047992 543 DTYAKSGNIVYSRTIFDGMSSK-----DI---------------ITWNSLICGYVLHGFWHAALDLFDQMKSF-GLKPNR 601 (868)
Q Consensus 543 ~~y~k~g~~~~A~~~f~~~~~~-----d~---------------~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~ 601 (868)
.-+.+.|++++|.+.|..+... +. .++..+...|...|++++|++.+.++... +..++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 3456678888888888765321 11 12567888899999999999999887652 111222
Q ss_pred H----HHHHHHHHhhccCChHHHHHHHHHhhhhc---CCCC-ChhHHHHHHHhhhhcCChHHHHHHHHhC-------CCC
Q 047992 602 G----TFLSIILAHSLAGMVDLGKKVFCSITECY---QIIP-MIEHYSAMIDLYGRSGKLEEAMEFIEDM-------PIE 666 (868)
Q Consensus 602 ~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p-~~~~y~~lvd~l~r~g~~~eA~~~i~~~-------~~~ 666 (868)
. ....+-..+...|..+++..++....... +..+ ....+..++.+|...|++++|.+++++. ..+
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 1 12223334456788999999988765432 2222 2446778899999999999999998875 122
Q ss_pred CCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC-------chhHHHHHHHHhhcCCChhHHHHHHH
Q 047992 667 PDS-SIWEALLTACRIHGNIDLAVLAIERLFDLEPGD-------VLIQRLILQIYAICGKPEDALKVRKL 728 (868)
Q Consensus 667 p~~-~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~-------~~~~~~l~~~y~~~g~~~~a~~~~~~ 728 (868)
|.. .++..++..|...||++.|...+++++.+.|.. ...+..++.+|...|+|++|.+....
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~ 241 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFE 241 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 333 377888888999999999999999998765422 24567788899999999999885443
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00018 Score=63.40 Aligned_cols=87 Identities=15% Similarity=0.016 Sum_probs=46.2
Q ss_pred HHHhhhhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC---chhHHHHHHHHh
Q 047992 643 MIDLYGRSGKLEEAMEFIEDM-PIEPDS----SIWEALLTACRIHGNIDLAVLAIERLFDLEPGD---VLIQRLILQIYA 714 (868)
Q Consensus 643 lvd~l~r~g~~~eA~~~i~~~-~~~p~~----~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~---~~~~~~l~~~y~ 714 (868)
+...+.+.|++++|.+.+++. ...|+. .+|..+..++...|+++.|...++++++.+|++ +.++..++.+|.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 344455555666665555554 111211 244455555555566666666666666666555 444555566666
Q ss_pred hcCCChhHHHHHHHH
Q 047992 715 ICGKPEDALKVRKLE 729 (868)
Q Consensus 715 ~~g~~~~a~~~~~~m 729 (868)
..|++++|.+..+..
T Consensus 88 ~~g~~~~A~~~~~~~ 102 (129)
T 2xev_A 88 GEGKNTEAQQTLQQV 102 (129)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHH
Confidence 666666665554444
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.81 E-value=3.2e-05 Score=82.69 Aligned_cols=135 Identities=13% Similarity=0.134 Sum_probs=100.8
Q ss_pred ecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCC-ChhHHHHHHHh
Q 047992 568 TWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIP-MIEHYSAMIDL 646 (868)
Q Consensus 568 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lvd~ 646 (868)
.|..+...|...|++++|++.|++.++ +.|+.. ..-..++.. ...| ....|..+..+
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~--~~~~~~----------~~~~~~~~~----------~~~~~~~~~~~nla~~ 282 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLR--YVEGSR----------AAAEDADGA----------KLQPVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHHH----------HHSCHHHHG----------GGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH--HhhcCc----------cccChHHHH----------HHHHHHHHHHHHHHHH
Confidence 567777777788888888888877765 111110 000000000 1112 24567788889
Q ss_pred hhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHH
Q 047992 647 YGRSGKLEEAMEFIEDM-PIEPD-SSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALK 724 (868)
Q Consensus 647 l~r~g~~~eA~~~i~~~-~~~p~-~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~ 724 (868)
|.+.|++++|++.+++. ...|+ ...|..+..++...|+++.|...++++++++|++..++..|+.++...|+.+++.+
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987 55564 55888999999999999999999999999999999999999999999988887765
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.78 E-value=8.6e-05 Score=68.15 Aligned_cols=130 Identities=14% Similarity=0.104 Sum_probs=73.7
Q ss_pred ecHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHh
Q 047992 568 TWNSLICGYVLHGFWHAALDLFDQMKSFGLK-PNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDL 646 (868)
Q Consensus 568 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~ 646 (868)
++..+...|...|++++|++.|++..+.... ++... ....+..+..+
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~--------------------------------~~~~~~~l~~~ 58 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAA--------------------------------ERIAYSNLGNA 58 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH--------------------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchH--------------------------------HHHHHHHHHHH
Confidence 4566666666777777777777766552100 11100 01123344444
Q ss_pred hhhcCChHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC------CchhHHHHHHH
Q 047992 647 YGRSGKLEEAMEFIEDM----PIEPD----SSIWEALLTACRIHGNIDLAVLAIERLFDLEPG------DVLIQRLILQI 712 (868)
Q Consensus 647 l~r~g~~~eA~~~i~~~----~~~p~----~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~------~~~~~~~l~~~ 712 (868)
+...|++++|.+.+++. +..++ ..++..+...+...|+++.|...+++++++.+. .+..+..++.+
T Consensus 59 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~ 138 (164)
T 3ro3_A 59 YIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNA 138 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHH
Confidence 44555555555544443 10111 235556666677777777777777777765322 24567778888
Q ss_pred HhhcCCChhHHHHHHHH
Q 047992 713 YAICGKPEDALKVRKLE 729 (868)
Q Consensus 713 y~~~g~~~~a~~~~~~m 729 (868)
|...|++++|.+..+..
T Consensus 139 ~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 139 YTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHHHTCHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHH
Confidence 88888888888865544
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.77 E-value=7.5e-05 Score=82.35 Aligned_cols=127 Identities=13% Similarity=0.007 Sum_probs=89.7
Q ss_pred hccCChHHHHHHHHHhhhhcCC-----CC-ChhHHHHHHHhhhhcCChHHHHHHHHhC---------CCCCCHH-HHHHH
Q 047992 612 SLAGMVDLGKKVFCSITECYQI-----IP-MIEHYSAMIDLYGRSGKLEEAMEFIEDM---------PIEPDSS-IWEAL 675 (868)
Q Consensus 612 ~~~g~~~~a~~~~~~m~~~~~~-----~p-~~~~y~~lvd~l~r~g~~~eA~~~i~~~---------~~~p~~~-~w~~l 675 (868)
...|++++|..+++...+...- .| ....++.+..+|...|++++|+.++++. |..|+.. +++.|
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 399 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA 399 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3455666665555544332211 11 2345677777777888888887777665 3445544 78889
Q ss_pred HHHHHhcCCHHHHHHHHHHHhc-----cCCCCchhH---HHHHHHHhhcCCChhHHHHHHHHHhcCCCCCC
Q 047992 676 LTACRIHGNIDLAVLAIERLFD-----LEPGDVLIQ---RLILQIYAICGKPEDALKVRKLERENTRRNSF 738 (868)
Q Consensus 676 l~a~~~~~~~~~a~~~~~~~~~-----l~p~~~~~~---~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~ 738 (868)
...+...|+++.|+..++++++ +.|+++.+- .+|...+...|++++|+.+++.++++-.+..|
T Consensus 400 a~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~~~ 470 (490)
T 3n71_A 400 GLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNNQP 470 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999986 678887554 56778899999999999999999886644433
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.77 E-value=8.4e-05 Score=68.25 Aligned_cols=137 Identities=14% Similarity=0.070 Sum_probs=85.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----CCc----eecHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----
Q 047992 535 LPVMNSLIDTYAKSGNIVYSRTIFDGMSS-----KDI----ITWNSLICGYVLHGFWHAALDLFDQMKSFGL-KPN---- 600 (868)
Q Consensus 535 ~~~~~~Li~~y~k~g~~~~A~~~f~~~~~-----~d~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~---- 600 (868)
..++..+...|...|++++|...|++... .+. .++..+...|...|++++|++.|++..+..- .++
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 34678899999999999999999987642 221 3677788888888999999998888765210 011
Q ss_pred HHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 047992 601 RGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPIEPD-SSIWEALLTAC 679 (868)
Q Consensus 601 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~~~~p~-~~~w~~ll~a~ 679 (868)
...+..+...+...|+.++|..+++...+.. ++.+..+. ..++..+...+
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-----------------------------~~~~~~~~~~~~~~~la~~~ 139 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA-----------------------------QELKDRIGEGRACWSLGNAY 139 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----------------------------HHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-----------------------------HHccchHhHHHHHHHHHHHH
Confidence 1233444445555555555555555433211 11111111 22455566667
Q ss_pred HhcCCHHHHHHHHHHHhccCC
Q 047992 680 RIHGNIDLAVLAIERLFDLEP 700 (868)
Q Consensus 680 ~~~~~~~~a~~~~~~~~~l~p 700 (868)
...|+++.|...+++++++..
T Consensus 140 ~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 140 TALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHTCHHHHHHHHHHHHHHHT
T ss_pred HHccCHHHHHHHHHHHHHHHH
Confidence 777888888888777776543
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.76 E-value=3.4e-05 Score=81.48 Aligned_cols=110 Identities=7% Similarity=-0.129 Sum_probs=86.5
Q ss_pred HHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 047992 603 TFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPIEPDSSIWEALLTACRIH 682 (868)
Q Consensus 603 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~~~~p~~~~w~~ll~a~~~~ 682 (868)
.+......+...|++++|...|+..... .|+.. .+...|+.+++...+.. .+|..+..++...
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~-------~~~~~~~~~~~~~~l~~-------~~~~nla~~~~~~ 243 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDF-------MFQLYGKYQDMALAVKN-------PCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHH-------HHTCCHHHHHHHHHHHT-------HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccch-------hhhhcccHHHHHHHHHH-------HHHHHHHHHHHHc
Confidence 3555666788889999999998887652 23321 13344556666554432 3788888889999
Q ss_pred CCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHH
Q 047992 683 GNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLE 729 (868)
Q Consensus 683 ~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 729 (868)
|+++.|...++++++++|+++.+|..++.+|...|++++|.+..+..
T Consensus 244 g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~a 290 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKA 290 (338)
T ss_dssp TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999987754
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.76 E-value=2.3e-05 Score=68.07 Aligned_cols=105 Identities=12% Similarity=0.066 Sum_probs=67.5
Q ss_pred CChHHHHHHHHHhhhhcCCCC-ChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 047992 615 GMVDLGKKVFCSITECYQIIP-MIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLA 691 (868)
Q Consensus 615 g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~ 691 (868)
|+.++|+.+|+...+...-.| +...+..+..+|.+.|++++|.+.+++. ...| +..+|..+..++...|+++.|...
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 83 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVEL 83 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHH
Confidence 445555555554443100012 2344666677777778888888777776 3334 355788888888999999999999
Q ss_pred HHHHhccCCCCchhHHHHHHHHhhcCCC
Q 047992 692 IERLFDLEPGDVLIQRLILQIYAICGKP 719 (868)
Q Consensus 692 ~~~~~~l~p~~~~~~~~l~~~y~~~g~~ 719 (868)
+++++++.|+++.......-+..-.+..
T Consensus 84 ~~~al~~~p~~~~~~~~~~ai~~~~~~l 111 (117)
T 3k9i_A 84 LLKIIAETSDDETIQSYKQAILFYADKL 111 (117)
T ss_dssp HHHHHHHHCCCHHHHHTHHHHHHHTTCT
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence 9999999999887655544444444433
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.74 E-value=0.0001 Score=60.11 Aligned_cols=81 Identities=20% Similarity=0.383 Sum_probs=66.8
Q ss_pred hhHHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHh
Q 047992 637 IEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYA 714 (868)
Q Consensus 637 ~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 714 (868)
...+..+...+.+.|++++|.+.+++. ...| +..+|..+...+...|+++.|...++++++++|+++.++..++.+|.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 345666777788888888888888776 3333 46688889999999999999999999999999999999999999987
Q ss_pred hcC
Q 047992 715 ICG 717 (868)
Q Consensus 715 ~~g 717 (868)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.70 E-value=3.4e-05 Score=71.54 Aligned_cols=122 Identities=16% Similarity=0.112 Sum_probs=85.1
Q ss_pred eecHHHHHHHHhcCChHHHHHHHHHHHHCC------CCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCC-ChhH
Q 047992 567 ITWNSLICGYVLHGFWHAALDLFDQMKSFG------LKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIP-MIEH 639 (868)
Q Consensus 567 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g------~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~ 639 (868)
..|......+.+.|++++|++.|++.+..- -.|+...+ . . ..| ....
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~-----------------~---~------~~~~~~~~ 65 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEW-----------------V---E------LDRKNIPL 65 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHH-----------------H---H------HHHTHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHH-----------------H---H------HHHHHHHH
Confidence 356667777777888888888887776520 01111100 0 0 011 2345
Q ss_pred HHHHHHhhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc-hhHHHHHHHHh
Q 047992 640 YSAMIDLYGRSGKLEEAMEFIEDM-PIEPD-SSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDV-LIQRLILQIYA 714 (868)
Q Consensus 640 y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~-~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~-~~~~~l~~~y~ 714 (868)
|..+..+|.+.|++++|...+++. ...|+ ...|..+..++...|+++.|...++++++++|+++ .....|..+..
T Consensus 66 ~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~ 143 (162)
T 3rkv_A 66 YANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTE 143 (162)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 677778888888999988888876 34454 55888999999999999999999999999999998 55666665543
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00014 Score=60.93 Aligned_cols=63 Identities=21% Similarity=0.176 Sum_probs=57.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHH
Q 047992 668 DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLER 730 (868)
Q Consensus 668 ~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 730 (868)
+..+|..+..++...|+++.|...++++++++|+++.+|..|+.+|...|++++|.+..+...
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 566899999999999999999999999999999999999999999999999999999766543
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00046 Score=75.57 Aligned_cols=158 Identities=12% Similarity=0.005 Sum_probs=119.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCH----------------HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCC
Q 047992 573 ICGYVLHGFWHAALDLFDQMKSFGLKPNR----------------GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPM 636 (868)
Q Consensus 573 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~----------------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 636 (868)
...+...|++++|++.|.++.+....... ..+..+...|...|+++++.+++..+.+..+..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 34567889999999999999884322111 13677888999999999999999988775544443
Q ss_pred hh----HHHHHHHhhhhcCChHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcc------
Q 047992 637 IE----HYSAMIDLYGRSGKLEEAMEFIEDM-------PIEPD-SSIWEALLTACRIHGNIDLAVLAIERLFDL------ 698 (868)
Q Consensus 637 ~~----~y~~lvd~l~r~g~~~eA~~~i~~~-------~~~p~-~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l------ 698 (868)
.. ....+..++...|.+++|.++++.. ...+. ..++..|...+...|+++.|...+++++..
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 32 3444556667789999999988765 22333 347888888999999999999999998764
Q ss_pred CCCCchhHHHHHHHHhhcCCChhHHHHHHHHH
Q 047992 699 EPGDVLIQRLILQIYAICGKPEDALKVRKLER 730 (868)
Q Consensus 699 ~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 730 (868)
.|.....|..++.+|...|+|++|....+...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 202 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAAR 202 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 23345688999999999999999999766543
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.59 E-value=8.4e-05 Score=64.15 Aligned_cols=75 Identities=15% Similarity=0.101 Sum_probs=54.2
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHH
Q 047992 656 AMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLER 730 (868)
Q Consensus 656 A~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 730 (868)
|.+.+++. ...| +...|..+...+...|+++.|...++++++++|+++.+|..|+.+|...|++++|....+...
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44444443 3334 455777777777888888888888888888888888888888888888888888887666543
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00019 Score=58.91 Aligned_cols=69 Identities=19% Similarity=0.104 Sum_probs=60.8
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHHhcCC
Q 047992 666 EPDSSIWEALLTACRIHGN---IDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLERENTR 734 (868)
Q Consensus 666 ~p~~~~w~~ll~a~~~~~~---~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 734 (868)
++|+.+|..+..+....++ .+.|...++++++++|+++.+..+|++++...|++++|...++.+.+...
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4567788888888866655 79999999999999999999999999999999999999999999876654
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.50 E-value=6.5e-05 Score=67.80 Aligned_cols=105 Identities=12% Similarity=0.022 Sum_probs=69.5
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHH
Q 047992 577 VLHGFWHAALDLFDQMKSFGLKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEE 655 (868)
Q Consensus 577 ~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~e 655 (868)
.+-+++++|++.+++..+ ..|+. ..+..+..++...|.++.|..... .+++
T Consensus 13 ~r~~~feeA~~~~~~Ai~--l~P~~aea~~n~G~~l~~l~~~~~g~~al~--------------------------~~~e 64 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQ--------------------------MIQE 64 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHH--------------------------HHHH
T ss_pred HHHhHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhcccchhhhhHh--------------------------HHHH
Confidence 455667788888888877 56644 555556556665555443333211 2556
Q ss_pred HHHHHHhC-CCCCC-HHHHHHHHHHHHhc-----------CCHHHHHHHHHHHhccCCCCchhHHHH
Q 047992 656 AMEFIEDM-PIEPD-SSIWEALLTACRIH-----------GNIDLAVLAIERLFDLEPGDVLIQRLI 709 (868)
Q Consensus 656 A~~~i~~~-~~~p~-~~~w~~ll~a~~~~-----------~~~~~a~~~~~~~~~l~p~~~~~~~~l 709 (868)
|+..+++. .+.|+ ..+|..|..++... |+++.|...++++++++|+++.+...+
T Consensus 65 Ai~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al 131 (158)
T 1zu2_A 65 AITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSL 131 (158)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 66666665 44554 34777777777765 589999999999999999986554444
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.43 E-value=3.7e-05 Score=69.36 Aligned_cols=85 Identities=14% Similarity=0.039 Sum_probs=66.6
Q ss_pred hhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC----------HHHHHHHHHHHhccCCCCchhHHHHHHHHhh
Q 047992 648 GRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGN----------IDLAVLAIERLFDLEPGDVLIQRLILQIYAI 715 (868)
Q Consensus 648 ~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~----------~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 715 (868)
.|.+++++|.+.+++. ...| +...|..+..++...++ ++.|+..++++++++|+++.+|..|+++|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 3566778888887776 3444 44577767776665554 5799999999999999999999999999998
Q ss_pred cC-----------CChhHHHHHHHHHhc
Q 047992 716 CG-----------KPEDALKVRKLEREN 732 (868)
Q Consensus 716 ~g-----------~~~~a~~~~~~m~~~ 732 (868)
.| ++++|.+..+...+.
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 85 899999987766543
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00027 Score=75.39 Aligned_cols=63 Identities=14% Similarity=-0.040 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHHh
Q 047992 669 SSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLERE 731 (868)
Q Consensus 669 ~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 731 (868)
..+|..+..++...|+++.|...++++++++|+++.+|..++.+|...|++++|.+..+...+
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 458888999999999999999999999999999999999999999999999999998776654
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00094 Score=73.65 Aligned_cols=119 Identities=8% Similarity=-0.067 Sum_probs=73.9
Q ss_pred ecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHhhccCChHHHHHHHHHhhhhc
Q 047992 568 TWNSLICGYVLHGFWHAALDLFDQMKSFGLKPN----------------RGTFLSIILAHSLAGMVDLGKKVFCSITECY 631 (868)
Q Consensus 568 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----------------~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 631 (868)
.|+.+...|.+.|++++|+..|++.++ +.|+ ...+..+..++.+.|++++|+..|+...+..
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVS--WLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH--HhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 444555555556666666666666555 2333 2455666666777777777777777766532
Q ss_pred CCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHH
Q 047992 632 QIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPDSS-IWEALLTACRIHGNIDLAVL 690 (868)
Q Consensus 632 ~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~~~-~w~~ll~a~~~~~~~~~a~~ 690 (868)
..+...|..+..+|.+.|++++|.+.++++ .+.|+.. +|..+..++...++.+.+++
T Consensus 348 --p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 348 --SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred --CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 223556677777777888888888888776 5556544 67777777777777776654
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00045 Score=74.76 Aligned_cols=104 Identities=10% Similarity=-0.014 Sum_probs=73.4
Q ss_pred cCChHHHHHHHHhC---------CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhc-----cCCCCc---hhHHHHHH
Q 047992 650 SGKLEEAMEFIEDM---------PIEPDSS-IWEALLTACRIHGNIDLAVLAIERLFD-----LEPGDV---LIQRLILQ 711 (868)
Q Consensus 650 ~g~~~eA~~~i~~~---------~~~p~~~-~w~~ll~a~~~~~~~~~a~~~~~~~~~-----l~p~~~---~~~~~l~~ 711 (868)
.|+++||++++++. |..|+.. +++.|..+|...|+++.|+..++++++ +.|+++ ..|..|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 35566666665543 2334443 788888889999999999999998886 456665 45778899
Q ss_pred HHhhcCCChhHHHHHHHHHhcCCCCCCcccEEEEcCEEEEEEeCCCCCCchHHHHHHHHh
Q 047992 712 IYAICGKPEDALKVRKLERENTRRNSFGQCWIEVKNLVYTFVTGGWSESYSDLLYSWLQN 771 (868)
Q Consensus 712 ~y~~~g~~~~a~~~~~~m~~~~~~k~~g~s~i~~~~~~~~f~~~d~~hp~~~~i~~~l~~ 771 (868)
+|..+|++++|..+.+...+-- .+. -+..||.+.+++..|++
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~-~~~-----------------lG~~Hp~~~~l~~~l~~ 432 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIM-EVA-----------------HGKDHPYISEIKQEIES 432 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH-HHH-----------------TCTTCHHHHHHHHHHHC
T ss_pred HHHhccCHHHHHHHHHHHHHHH-HHH-----------------cCCCChHHHHHHHHHhc
Confidence 9999999999999755443211 111 12579999999988863
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00087 Score=56.85 Aligned_cols=65 Identities=11% Similarity=-0.012 Sum_probs=59.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHHh
Q 047992 667 PDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLERE 731 (868)
Q Consensus 667 p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 731 (868)
++...|..+...+...|+++.|...++++++++|+++.++..++.+|...|++++|.+..+...+
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34567888999999999999999999999999999999999999999999999999998776643
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0037 Score=64.76 Aligned_cols=137 Identities=18% Similarity=0.174 Sum_probs=73.7
Q ss_pred CCCCceecHHHHHHHHh--cCC---hHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCC
Q 047992 562 SSKDIITWNSLICGYVL--HGF---WHAALDLFDQMKSFGLKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIP 635 (868)
Q Consensus 562 ~~~d~~~~~~li~~~~~--~g~---~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 635 (868)
.+.|...|...+.|... .+. ..+|+.+|++.++ ..|+. ..+..+..++.. ...++ |
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~--------------~~~~~--~ 251 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIV--------------RHSQH--P 251 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHH--------------HHHHS--C
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH--------------HhccC--C
Confidence 45577788877766543 333 4789999999999 78885 334333333320 00001 1
Q ss_pred ChhHHHHHHHhhhhcCChHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHh
Q 047992 636 MIEHYSAMIDLYGRSGKLEEAMEFIEDMPI-EPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYA 714 (868)
Q Consensus 636 ~~~~y~~lvd~l~r~g~~~eA~~~i~~~~~-~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 714 (868)
..... .-.+.+|.+-...++. +.++.+|.++.-.....|+++.|...++++++++|+ ..+|++++.+|.
T Consensus 252 ~~~~~---------~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~ 321 (372)
T 3ly7_A 252 LDEKQ---------LAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYE 321 (372)
T ss_dssp CCHHH---------HHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHH
T ss_pred Cchhh---------HHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHH
Confidence 11000 0011233332233322 233445555555555556666666666666666653 456666666666
Q ss_pred hcCCChhHHHHH
Q 047992 715 ICGKPEDALKVR 726 (868)
Q Consensus 715 ~~g~~~~a~~~~ 726 (868)
-.|++++|.+..
T Consensus 322 ~~G~~~eA~e~~ 333 (372)
T 3ly7_A 322 MKGMNREAADAY 333 (372)
T ss_dssp HTTCHHHHHHHH
T ss_pred HCCCHHHHHHHH
Confidence 666666666644
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0035 Score=70.81 Aligned_cols=133 Identities=8% Similarity=-0.022 Sum_probs=108.1
Q ss_pred CChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCC----------hHHHHHHHHHhhhhcCCCCChhHHHHHHHhhh
Q 047992 580 GFWHAALDLFDQMKSFGLKPNR-GTFLSIILAHSLAGM----------VDLGKKVFCSITECYQIIPMIEHYSAMIDLYG 648 (868)
Q Consensus 580 g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~----------~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~ 648 (868)
...++|++.++++++ +.|+. ..|..--.+..+.|. +++++.+++.+.+... -+...|.--..++.
T Consensus 43 ~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p--K~y~aW~hR~w~l~ 118 (567)
T 1dce_A 43 ELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP--KSYGTWHHRCWLLS 118 (567)
T ss_dssp CCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHH
Confidence 345789999999999 78877 445555555666666 8999999999987432 23445666677788
Q ss_pred hcC--ChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhccCCCCchhHHHHHHHHhhc
Q 047992 649 RSG--KLEEAMEFIEDM-PIE-PDSSIWEALLTACRIHG-NIDLAVLAIERLFDLEPGDVLIQRLILQIYAIC 716 (868)
Q Consensus 649 r~g--~~~eA~~~i~~~-~~~-p~~~~w~~ll~a~~~~~-~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 716 (868)
+.| ++++|.++++++ ... -|..+|+.-..+....| ..+.+...++++++.+|.|.++|...+.++...
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l 191 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL 191 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHH
T ss_pred HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhh
Confidence 889 779999999998 333 46779999999998888 899999999999999999999999999998875
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0025 Score=56.92 Aligned_cols=112 Identities=13% Similarity=-0.035 Sum_probs=65.0
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhh----cCChH
Q 047992 579 HGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGR----SGKLE 654 (868)
Q Consensus 579 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r----~g~~~ 654 (868)
.++.++|++.|++..+.| .|+.. +...+...+.+++|..+|+...+. -+...+..+..+|.+ .++++
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHH
T ss_pred ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHH
Confidence 345677888888887766 33333 445566666677777777766552 233444555555554 55666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhccC
Q 047992 655 EAMEFIEDMPIEPDSSIWEALLTACRI----HGNIDLAVLAIERLFDLE 699 (868)
Q Consensus 655 eA~~~i~~~~~~p~~~~w~~ll~a~~~----~~~~~~a~~~~~~~~~l~ 699 (868)
+|.+++++.--.-++..+..|...+.. .+|.+.|...++++.++.
T Consensus 79 ~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 79 KAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 666666655322344455555555554 556666666666665553
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0016 Score=55.94 Aligned_cols=66 Identities=15% Similarity=0.151 Sum_probs=47.5
Q ss_pred hhHHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 047992 637 IEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGD 702 (868)
Q Consensus 637 ~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~ 702 (868)
...+..+..+|.+.|++++|.+.+++. ...| +...|..+..++...|+++.|...+++++++.|++
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 86 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSR 86 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 344556666666677777777776665 2333 35578888888888899999999999999888854
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0031 Score=69.43 Aligned_cols=122 Identities=10% Similarity=-0.014 Sum_probs=74.9
Q ss_pred HHhcCChHHHHHHHHHHHHC---CCCCCH----HHHHHHHHHhhccCChHHHHHHHHHhhhhc----C-CCCC-hhHHHH
Q 047992 576 YVLHGFWHAALDLFDQMKSF---GLKPNR----GTFLSIILAHSLAGMVDLGKKVFCSITECY----Q-IIPM-IEHYSA 642 (868)
Q Consensus 576 ~~~~g~~~~A~~l~~~m~~~---g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~----~-~~p~-~~~y~~ 642 (868)
+...|++++|+.++++.++. -+-|++ .+++.+..+|...|++++|..+++...+.+ | ..|+ ...|+.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44556666666666665431 122332 355566666667777777777666554422 2 1222 335777
Q ss_pred HHHhhhhcCChHHHHHHHHhC---------CCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHhc
Q 047992 643 MIDLYGRSGKLEEAMEFIEDM---------PIEPDSSIWEALLTAC-RIHGNIDLAVLAIERLFD 697 (868)
Q Consensus 643 lvd~l~r~g~~~eA~~~i~~~---------~~~p~~~~w~~ll~a~-~~~~~~~~a~~~~~~~~~ 697 (868)
|..+|...|++++|+.+++++ |-.|+..-...++.-| ...+.++.|+..+.++.+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888776 3334444333444444 467788889888888755
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0022 Score=51.95 Aligned_cols=63 Identities=19% Similarity=0.254 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHHh
Q 047992 669 SSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLERE 731 (868)
Q Consensus 669 ~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 731 (868)
...|..+...+...|+++.|...++++++++|+++..+..++.+|...|++++|.+..+...+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 457888888999999999999999999999999999999999999999999999998776644
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0012 Score=71.67 Aligned_cols=108 Identities=15% Similarity=0.137 Sum_probs=73.1
Q ss_pred HhhhhcCChHHHHHHHHhC------CCCC---CHH-HHHHHHHHHHhcCCHHHHHHHHHHHhc-----cCCCCc---hhH
Q 047992 645 DLYGRSGKLEEAMEFIEDM------PIEP---DSS-IWEALLTACRIHGNIDLAVLAIERLFD-----LEPGDV---LIQ 706 (868)
Q Consensus 645 d~l~r~g~~~eA~~~i~~~------~~~p---~~~-~w~~ll~a~~~~~~~~~a~~~~~~~~~-----l~p~~~---~~~ 706 (868)
+-+.+.|++++|++++++. -+.| +.. +++.|..+|...|+++.|+..++++++ +.|+++ ..|
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 3345667777777776654 1223 222 778888888888999999988888876 345555 446
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHhcCCCCCCcccEEEEcCEEEEEEeCCCCCCchHHHHHHHH
Q 047992 707 RLILQIYAICGKPEDALKVRKLERENTRRNSFGQCWIEVKNLVYTFVTGGWSESYSDLLYSWLQ 770 (868)
Q Consensus 707 ~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~g~s~i~~~~~~~~f~~~d~~hp~~~~i~~~l~ 770 (868)
..|+.+|...|++++|..+.+...+-- .+. -+..||.+.+++..|.
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~-~~~-----------------lG~~Hp~~~~~~~~l~ 420 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDIM-RVT-----------------HGREHSLIEDLILLLE 420 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH-HHH-----------------TCTTSHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHH-HHh-----------------cCCCChHHHHHHHHHH
Confidence 778888999999999998655443211 111 1256999888888776
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0041 Score=51.40 Aligned_cols=64 Identities=22% Similarity=0.337 Sum_probs=52.6
Q ss_pred HHHhhhhcCChHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhH
Q 047992 643 MIDLYGRSGKLEEAMEFIEDM-PIEP-DSS-IWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQ 706 (868)
Q Consensus 643 lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~-~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~ 706 (868)
....+.+.|++++|.+.+++. ...| +.. +|..+..++...|+++.|...++++++++|+++.++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 355667788899998888876 3344 456 788888888999999999999999999999998877
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0046 Score=66.86 Aligned_cols=73 Identities=10% Similarity=0.048 Sum_probs=53.1
Q ss_pred hHHHHHHHhhhhcCChHHHHHHHHhC---------CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhc-----cCCCC
Q 047992 638 EHYSAMIDLYGRSGKLEEAMEFIEDM---------PIEPDSS-IWEALLTACRIHGNIDLAVLAIERLFD-----LEPGD 702 (868)
Q Consensus 638 ~~y~~lvd~l~r~g~~~eA~~~i~~~---------~~~p~~~-~w~~ll~a~~~~~~~~~a~~~~~~~~~-----l~p~~ 702 (868)
.+++.+..+|...|++++|+.+++++ |..|+.. .++.|...|...|++++|+..++++++ +.|++
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~H 420 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDH 420 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34566666777777777777766654 3445554 788889999999999999999999886 57888
Q ss_pred chhHHHHH
Q 047992 703 VLIQRLIL 710 (868)
Q Consensus 703 ~~~~~~l~ 710 (868)
+.+-.+..
T Consensus 421 p~~~~l~~ 428 (433)
T 3qww_A 421 PYISEIKQ 428 (433)
T ss_dssp HHHHHHHH
T ss_pred hHHHHHHH
Confidence 76554443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0027 Score=52.90 Aligned_cols=63 Identities=21% Similarity=0.191 Sum_probs=35.0
Q ss_pred CceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhh
Q 047992 565 DIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITE 629 (868)
Q Consensus 565 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 629 (868)
+...|..+...|...|++++|++.|++.++ ..|+. ..+..+..++...|+.++|...|+...+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVE--TDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 444555555566666666666666666655 34432 4445555555556666666665555443
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=96.69 E-value=0.013 Score=52.16 Aligned_cols=112 Identities=6% Similarity=-0.105 Sum_probs=92.8
Q ss_pred CChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHH
Q 047992 615 GMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPIEPDSSIWEALLTACRI----HGNIDLAVL 690 (868)
Q Consensus 615 g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~~~~p~~~~w~~ll~a~~~----~~~~~~a~~ 690 (868)
++.++|..+|+...+. + .|.. . +..+|...+..++|.+++++.-...++..+..|...+.. .+|.+.|..
T Consensus 9 ~d~~~A~~~~~~aa~~-g-~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 9 KDLKKAIQYYVKACEL-N-EMFG--C--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHT-T-CTTH--H--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcC-C-CHhh--h--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 4678999999988763 3 3333 2 888888889999999999998444677788888888877 799999999
Q ss_pred HHHHHhccCCCCchhHHHHHHHHhh----cCCChhHHHHHHHHHhcCC
Q 047992 691 AIERLFDLEPGDVLIQRLILQIYAI----CGKPEDALKVRKLERENTR 734 (868)
Q Consensus 691 ~~~~~~~l~p~~~~~~~~l~~~y~~----~g~~~~a~~~~~~m~~~~~ 734 (868)
.++++.+. .++.++..|+.+|.. .+++++|.+..+.--+.|.
T Consensus 83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999987 678999999999999 8999999998887776653
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.01 Score=64.32 Aligned_cols=72 Identities=22% Similarity=0.154 Sum_probs=48.7
Q ss_pred HHHHHHhhhhcCChHHHHHHHHhC---------CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhc-----cCCCCch
Q 047992 640 YSAMIDLYGRSGKLEEAMEFIEDM---------PIEPDSS-IWEALLTACRIHGNIDLAVLAIERLFD-----LEPGDVL 704 (868)
Q Consensus 640 y~~lvd~l~r~g~~~eA~~~i~~~---------~~~p~~~-~w~~ll~a~~~~~~~~~a~~~~~~~~~-----l~p~~~~ 704 (868)
++.+..+|...|++++|+++.+++ |..|+.. .++.|...+...|+++.|+..++++++ +.|+++.
T Consensus 332 ~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~ 411 (429)
T 3qwp_A 332 LDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSL 411 (429)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChH
Confidence 444555555555555555555443 3445544 678888888899999999999988876 6788887
Q ss_pred hHHHHHH
Q 047992 705 IQRLILQ 711 (868)
Q Consensus 705 ~~~~l~~ 711 (868)
+-.++.+
T Consensus 412 ~~~~~~~ 418 (429)
T 3qwp_A 412 IEDLILL 418 (429)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665544
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.35 E-value=2.7e-05 Score=81.62 Aligned_cols=259 Identities=14% Similarity=0.166 Sum_probs=129.4
Q ss_pred eeHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchHHHHHHHH
Q 047992 123 YTWSAMIGAYSRDQRWREVVELFFLMVQDGLFPDDFLFPKILQACGNCGDFEAGKLMHSLVIKLGMSCVRRVRNSVLAVY 202 (868)
Q Consensus 123 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 202 (868)
..|..|-.++...++..+|++.|-+ .-|+..|..++.++.+.|.++.-...+..+.+. ..++.+-+.|+-+|
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ay 126 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFAL 126 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHH
T ss_pred cHHHHHHHHHHccCchHHHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHH
Confidence 3456666666666666666655432 124455666677776666666666555555444 24455667777777
Q ss_pred HHcCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCccChhhHHHHHHHHHhcCChHHHHHHHH
Q 047992 203 VKCGKLIWARRFFESMDEKDGVAWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQLGQCDVAMEMVK 282 (868)
Q Consensus 203 ~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 282 (868)
++.+++.+-..++ ..+|+.-...+..-+...|.++.|.-+|..+.. |.-|...+.+.|++..|.+.-+
T Consensus 127 Ak~~rL~elEefl---~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq~AVdaAr 194 (624)
T 3lvg_A 127 AKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGAR 194 (624)
T ss_dssp HTSCSSSTTTSTT---SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGGSSTTTTT
T ss_pred HhhCcHHHHHHHH---cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHHHHHHHHH
Confidence 7777765433222 224555556666666666666666665544322 1122222333333333322111
Q ss_pred HHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcccHHHHHHHHhchhhHHHHHHHHHHHHHhCC-CC
Q 047992 283 RMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLAVKMGF-TD 361 (868)
Q Consensus 283 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~-~~ 361 (868)
+ .-++.||-.+-.+|+..+.+.-|.-.--.+.-. | .-...++..|...|.+++-..+++..+ |+ ..
T Consensus 195 K------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh---a--deL~elv~~YE~~G~f~ELIsLlEagl--glErA 261 (624)
T 3lvg_A 195 K------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---A--DELEELINYYQDRGYFEELITMLEAAL--GLERA 261 (624)
T ss_dssp T------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---S--SCCSGGGSSSSTTCCCTTSTTTHHHHT--TSTTC
T ss_pred h------cCChhHHHHHHHHHhCchHHHHHHHhcchhccc---H--HHHHHHHHHHHhCCCHHHHHHHHHHHh--CCCch
Confidence 1 125666666666666666666554433322211 1 112223344445555554444444333 21 23
Q ss_pred CccHHHHHHHHHHcCCCHHHHHHHHHhcC----CC-------CeehHHHHHHHHHhcCChhHHHH
Q 047992 362 DVLVGNSLINMYSKCEELEAAERVFDMIK----DK-------DVYSWNSMIAGYCQAGYCGKAYE 415 (868)
Q Consensus 362 ~~~~~~~li~~y~~~g~~~~A~~vf~~~~----~~-------~~~~~~~li~~~~~~g~~~~A~~ 415 (868)
...+++-|.-.|+|-. +++-.+-++..- -| ....|.-++-.|.+...++.|..
T Consensus 262 HmGmFTELaILYsKY~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 262 HMGMFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp CHHHHHHHHHHHHSSC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred hHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 4455666666666542 222222222111 11 33456666666666666665543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.23 E-value=0.076 Score=63.18 Aligned_cols=151 Identities=14% Similarity=0.108 Sum_probs=92.4
Q ss_pred HHcCCCHHHHHH-HHHhcC-CCCeehHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCeeehhhHHHHHHhcCCHHHHHH
Q 047992 373 YSKCEELEAAER-VFDMIK-DKDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNVLISGYIQNGNEDEAVD 450 (868)
Q Consensus 373 y~~~g~~~~A~~-vf~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ 450 (868)
....+++++|.+ ++..++ .. ....++..+.+.|..++|+++.++- ..-.......|++++|.+
T Consensus 609 ~~~~~~~~~a~~~~l~~i~~~~---~~~~~~~~l~~~~~~~~a~~~~~~~------------~~~f~~~l~~~~~~~A~~ 673 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNVEGKD---SLTKIARFLEGQEYYEEALNISPDQ------------DQKFELALKVGQLTLARD 673 (814)
T ss_dssp HHHTTCHHHHHHHTGGGCCCHH---HHHHHHHHHHHTTCHHHHHHHCCCH------------HHHHHHHHHHTCHHHHHH
T ss_pred HHHhCCHHHHHHHHHhcCCchH---HHHHHHHHHHhCCChHHheecCCCc------------chheehhhhcCCHHHHHH
Confidence 345678888877 554444 22 2266677777788888887765321 122345567899999988
Q ss_pred HHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhC
Q 047992 451 LFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRS 530 (868)
Q Consensus 451 ~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~ 530 (868)
+.+.+ .+...|..+...+.+.++++.|.+.|.++.. +..+...+...++.+....+-......|
T Consensus 674 ~~~~~-------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~ 737 (814)
T 3mkq_A 674 LLTDE-------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG 737 (814)
T ss_dssp HHTTC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHhh-------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 87766 4567899999999999999999999988753 2233333333455444444433333322
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHhc
Q 047992 531 LESSLPVMNSLIDTYAKSGNIVYSRTIFDG 560 (868)
Q Consensus 531 ~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~ 560 (868)
. ++.-..+|.++|++++|.+++.+
T Consensus 738 ~------~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 738 K------FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp C------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred c------hHHHHHHHHHcCCHHHHHHHHHH
Confidence 1 23334445556666666554443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0072 Score=49.88 Aligned_cols=58 Identities=22% Similarity=0.190 Sum_probs=52.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCCCch-hHHHHHHHHhhcCCChhHHHHHHHHHhc
Q 047992 675 LLTACRIHGNIDLAVLAIERLFDLEPGDVL-IQRLILQIYAICGKPEDALKVRKLEREN 732 (868)
Q Consensus 675 ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~-~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 732 (868)
....+...|+++.|...++++++++|+++. .+..++.+|...|++++|.+..+...+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 445677889999999999999999999999 9999999999999999999988766544
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.14 E-value=0.00064 Score=71.46 Aligned_cols=213 Identities=13% Similarity=0.115 Sum_probs=140.5
Q ss_pred ccCCCCcchHHHHHHHHhCCChhHHHHHHHHHhhcCCCCCcccHHHHHHHHhccCChHHHHHHHHHh-hhcCCCChhhhh
Q 047992 17 TKKSNPRFRDTHLDFLCGNGRLNEAITVLDSIATQGAKVRRNTYINLLQACIDSNSIHLARKLHAFL-NLVTEIDVFVKT 95 (868)
Q Consensus 17 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~i~~~~-~~~~~~~~~~~~ 95 (868)
.+...|.+|+.+..+....+...+|++.|- + .-|+..|..++.++.+.|..+...+.+... +. ..++.+=+
T Consensus 49 ~~~n~p~VWs~LgkAqL~~~~v~eAIdsyI---k---A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDt 120 (624)
T 3lvg_A 49 ERCNEPAVWSQLAKAQLQKGMVKEAIDSYI---K---ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVET 120 (624)
T ss_dssp SSCCCCCCSSSHHHHTTTSSSCTTTTTSSC---C---CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTH
T ss_pred HHhCCccHHHHHHHHHHccCchHHHHHHHH---h---CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHH
Confidence 346778899999999999999999977652 1 236778999999999999998888777655 33 45667888
Q ss_pred HHHHHHHhcCChhHHHHHHhhcCCCCceeHHHHHHHHHhCCChhHHHHHHHHhHHCC--------------------CCC
Q 047992 96 KLLSVYAKCGCLDDAREVFEDMRERNLYTWSAMIGAYSRDQRWREVVELFFLMVQDG--------------------LFP 155 (868)
Q Consensus 96 ~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g--------------------~~p 155 (868)
.|+-+|+|.+++.+-.+.+. .||+.--..+-.-+...|.++.|.-+|..+..-. ..-
T Consensus 121 eLi~ayAk~~rL~elEefl~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAn 197 (624)
T 3lvg_A 121 ELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKAN 197 (624)
T ss_dssp HHHHHHHTSCSSSTTTSTTS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCC
T ss_pred HHHHHHHhhCcHHHHHHHHc---CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999998776444332 3555555555666666666666665555432211 124
Q ss_pred CcchHHHHHHHhhCCCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHcCChHHHHHHHhhcC---CCChhhHHHHHHH
Q 047992 156 DDFLFPKILQACGNCGDFEAGKLMHSLVIKLGMSCVRRVRNSVLAVYVKCGKLIWARRFFESMD---EKDGVAWNSMISG 232 (868)
Q Consensus 156 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~d~~~~~~li~~ 232 (868)
+..||.-+-.+|...++++.|...--.++-. +.-...|+..|-..|-+++-..+++.-. +...-.|+-|.-.
T Consensus 198 s~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaIL 272 (624)
T 3lvg_A 198 STRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAIL 272 (624)
T ss_dssp SSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHH
T ss_pred ChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 5668888888888888877665443333321 1122345666777777777777776543 2355567777666
Q ss_pred HHhcCChhHHHHHH
Q 047992 233 YFQIGENDEAHRLF 246 (868)
Q Consensus 233 ~~~~g~~~~A~~l~ 246 (868)
|++- ++++..+.+
T Consensus 273 YsKY-~PeKlmEHl 285 (624)
T 3lvg_A 273 YSKF-KPQKMREHL 285 (624)
T ss_dssp HHSS-CTTHHHHHH
T ss_pred HHhc-CHHHHHHHH
Confidence 6665 344443333
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0096 Score=58.99 Aligned_cols=88 Identities=13% Similarity=0.080 Sum_probs=66.6
Q ss_pred ChHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHhccCCCC-chhHHHHHHHHhhc-CCCh
Q 047992 652 KLEEAMEFIEDM-PIEPD---SSIWEALLTACRI-----HGNIDLAVLAIERLFDLEPGD-VLIQRLILQIYAIC-GKPE 720 (868)
Q Consensus 652 ~~~eA~~~i~~~-~~~p~---~~~w~~ll~a~~~-----~~~~~~a~~~~~~~~~l~p~~-~~~~~~l~~~y~~~-g~~~ 720 (868)
.+.+|...+++. .+.|+ ...|..|...|.. -|+.+.|++.+++++++.|+. ..+++.++..|+.. |+.+
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 456666666666 55666 5577777777776 489999999999999999974 99999999988884 8899
Q ss_pred hHHHHHHHHHhcCCCCCCc
Q 047992 721 DALKVRKLERENTRRNSFG 739 (868)
Q Consensus 721 ~a~~~~~~m~~~~~~k~~g 739 (868)
++.+..+....-..+..|+
T Consensus 258 ~a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 258 GFDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHHcCCCCCCCC
Confidence 9888777666555544454
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=95.96 E-value=0.028 Score=58.18 Aligned_cols=40 Identities=8% Similarity=-0.013 Sum_probs=34.1
Q ss_pred HHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHHhcC
Q 047992 694 RLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLERENT 733 (868)
Q Consensus 694 ~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 733 (868)
..++++|.++.+|..++.++...|++++|....+...+.+
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln 307 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE 307 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 3457889999999999999999999999999877776654
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.88 E-value=0.025 Score=46.08 Aligned_cols=76 Identities=16% Similarity=0.054 Sum_probs=58.2
Q ss_pred CCChhHHHHHHHhhhhcCC---hHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHH
Q 047992 634 IPMIEHYSAMIDLYGRSGK---LEEAMEFIEDM-PIEPDSS-IWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRL 708 (868)
Q Consensus 634 ~p~~~~y~~lvd~l~r~g~---~~eA~~~i~~~-~~~p~~~-~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~ 708 (868)
.++.+.+..+..++..++. .++|..++++. ...|+.. .+..|...+...|+++.|...++++++.+|. +.....
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~~~~ 81 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLDRVT 81 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCCHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CccHHH
Confidence 3456778888887765544 79999999987 5566544 7777778889999999999999999999999 444444
Q ss_pred HH
Q 047992 709 IL 710 (868)
Q Consensus 709 l~ 710 (868)
+.
T Consensus 82 i~ 83 (93)
T 3bee_A 82 II 83 (93)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.77 E-value=0.04 Score=46.02 Aligned_cols=72 Identities=15% Similarity=0.168 Sum_probs=53.6
Q ss_pred HHHHHHHhhhhcCChHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHH
Q 047992 639 HYSAMIDLYGRSGKLEEAMEFIEDM-----P----IEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLI 709 (868)
Q Consensus 639 ~y~~lvd~l~r~g~~~eA~~~i~~~-----~----~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l 709 (868)
.+-.|...+.+.|+++.|...++.+ + -.+...++..|..++...|+++.|...++++++++|+++.+...+
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~ 86 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence 3445566666666666666666554 1 123456889999999999999999999999999999998775555
Q ss_pred H
Q 047992 710 L 710 (868)
Q Consensus 710 ~ 710 (868)
.
T Consensus 87 ~ 87 (104)
T 2v5f_A 87 K 87 (104)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.31 E-value=0.052 Score=48.25 Aligned_cols=40 Identities=15% Similarity=0.023 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHH
Q 047992 671 IWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLIL 710 (868)
Q Consensus 671 ~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~ 710 (868)
.+-.|.-+|.+.||++.|.+.++++++++|+|..+..+..
T Consensus 73 ~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~ 112 (152)
T 1pc2_A 73 YVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELER 112 (152)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 5556777889999999999999999999999877666553
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.16 E-value=0.25 Score=58.56 Aligned_cols=154 Identities=12% Similarity=0.047 Sum_probs=100.6
Q ss_pred HHHHcCChHHHHH-HHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCccChhhHHHHHHHHHhcCChHHHHH
Q 047992 201 VYVKCGKLIWARR-FFESMDEKDGVAWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQLGQCDVAME 279 (868)
Q Consensus 201 ~y~~~g~~~~A~~-~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 279 (868)
.....++++.|.+ ++..++. ......++..+.+.|.+++|+++.+.-. .-.......|++++|.+
T Consensus 608 ~~~~~~~~~~a~~~~l~~i~~--~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~ 673 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNVEG--KDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARD 673 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGCCC--HHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHH
T ss_pred HHHHhCCHHHHHHHHHhcCCc--hHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHH
Confidence 3345688888887 6654441 1223777777888888888887663221 11345567899999988
Q ss_pred HHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcccHHHHHHHHhchhhHHHHHHHHHHHHHhCC
Q 047992 280 MVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLAVKMGF 359 (868)
Q Consensus 280 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~ 359 (868)
+.+.+. +...|..+...+.+.++++.|.+.|.++.+ |..+...+...++.+....+-..+...|
T Consensus 674 ~~~~~~------~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~- 737 (814)
T 3mkq_A 674 LLTDES------AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG- 737 (814)
T ss_dssp HHTTCC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT-
T ss_pred HHHhhC------cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC-
Confidence 866543 667899999999999999999999998842 3445555555666665555554444443
Q ss_pred CCCccHHHHHHHHHHcCCCHHHHHHHHHhc
Q 047992 360 TDDVLVGNSLINMYSKCEELEAAERVFDMI 389 (868)
Q Consensus 360 ~~~~~~~~~li~~y~~~g~~~~A~~vf~~~ 389 (868)
-++.....|.++|++++|.+++..+
T Consensus 738 -----~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 738 -----KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp -----CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred -----chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 1344445566677777777665443
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=93.85 E-value=0.4 Score=47.57 Aligned_cols=112 Identities=13% Similarity=0.089 Sum_probs=70.7
Q ss_pred hcCCHHHHHHHHhcCCCCCc--eecHHHHHH-HHhc--CC------hHHHHHHHHHHHHCCCCCC---HHHHHHHHHHhh
Q 047992 547 KSGNIVYSRTIFDGMSSKDI--ITWNSLICG-YVLH--GF------WHAALDLFDQMKSFGLKPN---RGTFLSIILAHS 612 (868)
Q Consensus 547 k~g~~~~A~~~f~~~~~~d~--~~~~~li~~-~~~~--g~------~~~A~~l~~~m~~~g~~p~---~~t~~~ll~a~~ 612 (868)
+.|+..+-.+.+.+..+.|+ ..|..++.+ ++.. |. ..+|..++++.++ +.|+ ...+..+...|.
T Consensus 133 ~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~ 210 (301)
T 3u64_A 133 FSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYA 210 (301)
T ss_dssp TSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHH
T ss_pred HhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHH
Confidence 34555555555666655444 467766653 3332 32 3577777888887 6777 355666666666
Q ss_pred c-----cCChHHHHHHHHHhhhhcCCCC--ChhHHHHHHHhhhhc-CChHHHHHHHHhC
Q 047992 613 L-----AGMVDLGKKVFCSITECYQIIP--MIEHYSAMIDLYGRS-GKLEEAMEFIEDM 663 (868)
Q Consensus 613 ~-----~g~~~~a~~~~~~m~~~~~~~p--~~~~y~~lvd~l~r~-g~~~eA~~~i~~~ 663 (868)
. .|+.++|.++|+...+ +.| ++.++..+.+.|.+. |+.++|.+.+++.
T Consensus 211 ~vPp~~gGd~ekA~~~ferAL~---LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kA 266 (301)
T 3u64_A 211 AAPESFGGGMEKAHTAFEHLTR---YCSAHDPDHHITYADALCIPLNNRAGFDEALDRA 266 (301)
T ss_dssp HSCTTTTCCHHHHHHHHHHHHH---HCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred hCCCccCCCHHHHHHHHHHHHH---hCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 6 3788888888877765 455 266666677777663 7777777776665
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.80 E-value=0.26 Score=44.95 Aligned_cols=74 Identities=23% Similarity=0.366 Sum_probs=51.7
Q ss_pred HhhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHH
Q 047992 645 DLYGRSGKLEEAMEFIEDMPIEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALK 724 (868)
Q Consensus 645 d~l~r~g~~~eA~~~i~~~~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~ 724 (868)
++-...|+++.|.++.+.+ .+...|..|...+..+||++.|++++.++- .+..|+-+|...|+-+.-.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l---~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~--------D~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL---NDSITWERLIQEALAQGNASLAEMIYQTQH--------SFDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT--------CHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh---CCHHHHHHHHHHHHHcCChHHHHHHHHHhC--------CHHHHHHHHHHhCCHHHHHH
Confidence 4455678888888888775 467788888888888888888888888763 34455556666666555554
Q ss_pred HHHHH
Q 047992 725 VRKLE 729 (868)
Q Consensus 725 ~~~~m 729 (868)
+-+.-
T Consensus 82 la~iA 86 (177)
T 3mkq_B 82 MQNIA 86 (177)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=93.62 E-value=3.1 Score=35.59 Aligned_cols=139 Identities=12% Similarity=0.029 Sum_probs=84.5
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHH
Q 047992 578 LHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAM 657 (868)
Q Consensus 578 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~ 657 (868)
-.|..++..++..+.... .+..-++-++.-...+-+-+--.+.++++-+-+.+.| +|++....
T Consensus 19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~--------------C~NlKrVi 81 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDK--------------CQNLKSVV 81 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGG--------------CSCTHHHH
T ss_pred HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcHh--------------hhcHHHHH
Confidence 456667777777766552 1222222222222222333334445555544444433 34444444
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHHhcCCC
Q 047992 658 EFIEDMPIEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLERENTRR 735 (868)
Q Consensus 658 ~~i~~~~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 735 (868)
+-+-.+. .+.....-.|......|.-|.-.++...++.-+|-+++..+-+++.|.+.|.-.+|.++++..=++|++
T Consensus 82 ~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 82 ECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 4443332 122223345667778899999999998887777778899999999999999999999999888888875
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.56 E-value=0.58 Score=53.61 Aligned_cols=53 Identities=13% Similarity=-0.075 Sum_probs=49.2
Q ss_pred HHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHH
Q 047992 677 TACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLE 729 (868)
Q Consensus 677 ~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 729 (868)
.-|...|+++.|..+++++...-|.+..+|..|+.+|...|+|+.|.-....+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 34677899999999999999999999999999999999999999999987766
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.08 E-value=1.5 Score=39.94 Aligned_cols=104 Identities=17% Similarity=0.249 Sum_probs=72.9
Q ss_pred HHHHHHcCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCccChhhHHHHHHHHHhcCChHHHH
Q 047992 199 LAVYVKCGKLIWARRFFESMDEKDGVAWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQLGQCDVAM 278 (868)
Q Consensus 199 i~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 278 (868)
......+|+++.|..+.+++ .+...|..+.......|+++-|.+.|..... +..+.-.|.-.|+.+.-.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 34456778888888877766 4567788888888888888888888877664 556666677777776666
Q ss_pred HHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHH
Q 047992 279 EMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEM 319 (868)
Q Consensus 279 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 319 (868)
++-+....+| -+|.....+...|+++++.++|.+.
T Consensus 81 kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 81 KMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 5555544332 3566666677778888888777554
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=92.13 E-value=0.99 Score=38.48 Aligned_cols=39 Identities=15% Similarity=0.030 Sum_probs=32.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHH
Q 047992 672 WEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLIL 710 (868)
Q Consensus 672 w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~ 710 (868)
.-.|.-+|.+.|+++.|.+..+.+++.+|+|..+..+..
T Consensus 77 lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~ 115 (126)
T 1nzn_A 77 VFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELER 115 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 344666788999999999999999999999877766654
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=90.38 E-value=0.92 Score=40.21 Aligned_cols=83 Identities=12% Similarity=-0.011 Sum_probs=49.3
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC---CHHHHHHHHhcCCCCC-----ceecHHHHHHHHhcCChHHHHH
Q 047992 516 SNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSG---NIVYSRTIFDGMSSKD-----IITWNSLICGYVLHGFWHAALD 587 (868)
Q Consensus 516 ~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g---~~~~A~~~f~~~~~~d-----~~~~~~li~~~~~~g~~~~A~~ 587 (868)
+...++-+....+.+. ++..+...+..++.+.. +++++..+|+.....+ ...+..+.-+|.+.|++++|++
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 3344444444444333 45555556666666666 4556666666543222 3355566667777888888888
Q ss_pred HHHHHHHCCCCCCH
Q 047992 588 LFDQMKSFGLKPNR 601 (868)
Q Consensus 588 l~~~m~~~g~~p~~ 601 (868)
.++++++ +.|+.
T Consensus 93 y~~~lL~--ieP~n 104 (152)
T 1pc2_A 93 YVRGLLQ--TEPQN 104 (152)
T ss_dssp HHHHHHH--HCTTC
T ss_pred HHHHHHh--cCCCC
Confidence 8888777 67754
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=89.29 E-value=20 Score=36.30 Aligned_cols=166 Identities=12% Similarity=0.071 Sum_probs=92.7
Q ss_pred hhhHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHH----HHhhcCCCCCCHHhHHHHH
Q 047992 432 WNVLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVF----RKMQSSCFYPNCVTILSVL 507 (868)
Q Consensus 432 ~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll 507 (868)
|.++..-|.+.+++++|++++..- ...+.+.|+..-|.++- +-..+.++++|..+..-++
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~G----------------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASV----------------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH----------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHH----------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 345556677888888888876654 23345555554443333 3344556777776666666
Q ss_pred HHHhchhch--H---HHHHHHHHHHHhCC--CCChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCceecHHHHHHHHhcC
Q 047992 508 PACAYLVAS--N---KVKEIHGCVLRRSL--ESSLPVMNSLIDTYAKSGNIVYSRTIFDGMSSKDIITWNSLICGYVLHG 580 (868)
Q Consensus 508 ~a~~~~~~~--~---~~~~i~~~~~~~~~--~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g 580 (868)
..+.....- + -..+....-.+.|- .-|+.+...+...|.+.|++.+|+.-|-.-..+.+..+..|+.-+...+
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~ 181 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQD 181 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTS
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhc
Confidence 555444321 1 12223333344442 2488899999999999999999999885322222345544443333332
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHhhccCChHHHHHHHHHhhh
Q 047992 581 FWHAALDLFDQMKSFGLKPNRGTFL-SIILAHSLAGMVDLGKKVFCSITE 629 (868)
Q Consensus 581 ~~~~A~~l~~~m~~~g~~p~~~t~~-~ll~a~~~~g~~~~a~~~~~~m~~ 629 (868)
...++ -.|. -.+--|...|.+..|...|+...+
T Consensus 182 ~~~e~----------------dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 182 ESHTA----------------PLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp CGGGH----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCccH----------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 21111 1221 112234456788888887766554
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=88.37 E-value=1.6 Score=38.16 Aligned_cols=108 Identities=12% Similarity=0.117 Sum_probs=67.4
Q ss_pred CCCCCceecHHHHHHHHhcCCh------HHHHHHHHHHHHCCCCCCHH----HHHHHHH---HhhccCChHHHHHHHHHh
Q 047992 561 MSSKDIITWNSLICGYVLHGFW------HAALDLFDQMKSFGLKPNRG----TFLSIIL---AHSLAGMVDLGKKVFCSI 627 (868)
Q Consensus 561 ~~~~d~~~~~~li~~~~~~g~~------~~A~~l~~~m~~~g~~p~~~----t~~~ll~---a~~~~g~~~~a~~~~~~m 627 (868)
|.+.|..+|-..+.-.-..|+. ++.+++|++.... ++|+.. .|.-+.- .+...+++++|+++|+.+
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMA 86 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 4466788888888888877888 7888888888774 666531 1111100 011124555555555544
Q ss_pred hhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 047992 628 TECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPIEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDV 703 (868)
Q Consensus 628 ~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~ 703 (868)
.+. .. .+ +.+|-....--.++||++.|+++..+++.+.|...
T Consensus 87 ~~~-------------------hK------------kF---AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 87 RAN-------------------CK------------KF---AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp HHH-------------------CT------------TB---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred HHH-------------------hH------------HH---HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 331 00 12 55777777767788999999999999999888654
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=87.12 E-value=1.7 Score=35.76 Aligned_cols=62 Identities=15% Similarity=-0.026 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccC-------CCCchhHHHHHHHHhhcCCChhHHHHHHHHHh
Q 047992 670 SIWEALLTACRIHGNIDLAVLAIERLFDLE-------PGDVLIQRLILQIYAICGKPEDALKVRKLERE 731 (868)
Q Consensus 670 ~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~-------p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 731 (868)
.-.-.|...+...|+++.|..-++++++.. +..+..|..|+..|.+.|++++|....+....
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 344568888899999999999999999853 34567799999999999999999998776643
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=86.29 E-value=5.5 Score=32.03 Aligned_cols=68 Identities=22% Similarity=0.235 Sum_probs=49.6
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHHhcCCC
Q 047992 656 AMEFIEDMPIEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLERENTRR 735 (868)
Q Consensus 656 A~~~i~~~~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 735 (868)
++.-+-.+..-|++.+..+.|.|||+-+|+..|.+.+|-+-..-.+....|-.+. .+++-.+.+.||.
T Consensus 32 glN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l------------qElkPtl~ELGI~ 99 (109)
T 1v54_E 32 GMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI------------QELRPTLNELGIS 99 (109)
T ss_dssp HHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH------------HHHHHHHHHHTCC
T ss_pred HHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH------------HHHhhHHHHhCCC
Confidence 3333444567899999999999999999999999999988644333344454433 3577777888875
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=86.11 E-value=4.2 Score=35.64 Aligned_cols=100 Identities=8% Similarity=0.069 Sum_probs=50.9
Q ss_pred CCChhhHHHHHHHHHhcCCh------hHHHHHHHHHHHcCCccChh-h---HHHHHHHH---HhcCChHHHHHHHHHHHh
Q 047992 220 EKDGVAWNSMISGYFQIGEN------DEAHRLFDKMCREEIKLGVV-T---FNILIRSY---NQLGQCDVAMEMVKRMES 286 (868)
Q Consensus 220 ~~d~~~~~~li~~~~~~g~~------~~A~~l~~~m~~~g~~p~~~-~---~~~li~~~---~~~g~~~~A~~~~~~m~~ 286 (868)
..|..+|-..+...-+.|++ ++.+++|++... .++|+.. . |--|.--| ...++.++|.++|+.+.+
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia-~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE-ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH-HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH-cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 45777888888888888888 777788887765 3344321 1 11111111 123556666666665544
Q ss_pred cCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047992 287 LGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSF 321 (868)
Q Consensus 287 ~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 321 (868)
.+-+- ...|-....--.++|+...|..++.....
T Consensus 89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG 122 (161)
T 4h7y_A 89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVE 122 (161)
T ss_dssp HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhc
Confidence 31111 22233333333344444444444444433
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=85.59 E-value=16 Score=31.25 Aligned_cols=67 Identities=9% Similarity=-0.051 Sum_probs=47.4
Q ss_pred CeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcccHHHHHHHHhchhhHHHHHHHHHHHHHhCC
Q 047992 292 DVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLAVKMGF 359 (868)
Q Consensus 292 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~ 359 (868)
+.......++.+..+|.-++-.+++..+.. +.+|++.....+..||.+.|+...+.+++.++-+.|+
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 455566667777777777777777777542 4566777777777888888888888877777777664
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=85.18 E-value=5 Score=34.34 Aligned_cols=40 Identities=20% Similarity=0.241 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHH
Q 047992 671 IWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLIL 710 (868)
Q Consensus 671 ~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~ 710 (868)
.+--|.-|+.+.||++.|++..+.+++.+|+|..+-.+..
T Consensus 80 ~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~ 119 (134)
T 3o48_A 80 CLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS 119 (134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 4555777889999999999999999999999876555443
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=82.79 E-value=9.6 Score=33.06 Aligned_cols=37 Identities=22% Similarity=0.295 Sum_probs=30.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHH
Q 047992 673 EALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLI 709 (868)
Q Consensus 673 ~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l 709 (868)
--|.-++.+.||++.|++..+.+++.+|+|..+-.+.
T Consensus 81 YyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk 117 (144)
T 1y8m_A 81 YYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 117 (144)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 3456678899999999999999999999987665554
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=82.20 E-value=11 Score=32.13 Aligned_cols=69 Identities=23% Similarity=0.283 Sum_probs=50.8
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc-cCCCCchhHHHHHHHHhhcCCChhHHHHHHHHHhc
Q 047992 654 EEAMEFIEDMPIEPDSSIWEALLTACRIHGNIDLAVLAIERLFD-LEPGDVLIQRLILQIYAICGKPEDALKVRKLEREN 732 (868)
Q Consensus 654 ~eA~~~i~~~~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~-l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 732 (868)
..++.-+-.+..-|++.+..+-|.|||+.+|+..|.+.+|-+-. .++. ...|-.+. .+++-.+.+.
T Consensus 73 rrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~-~~iY~y~l------------qElkPtl~EL 139 (152)
T 2y69_E 73 RKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH-KEIYPYVI------------QELRPTLNEL 139 (152)
T ss_dssp HHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC-TTHHHHHH------------HHHHHHHHHH
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCc-hhhHHHHH------------HHHhhHHHHh
Confidence 33444444557789999999999999999999999999998864 3343 44454433 3577778888
Q ss_pred CCC
Q 047992 733 TRR 735 (868)
Q Consensus 733 ~~~ 735 (868)
||.
T Consensus 140 GI~ 142 (152)
T 2y69_E 140 GIS 142 (152)
T ss_dssp TCC
T ss_pred CCC
Confidence 875
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=81.12 E-value=48 Score=33.27 Aligned_cols=166 Identities=8% Similarity=0.100 Sum_probs=88.1
Q ss_pred hHHHHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHH----HHHhhcCCCCCCHHhHHHHHHH
Q 047992 434 VLISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGV----FRKMQSSCFYPNCVTILSVLPA 509 (868)
Q Consensus 434 ~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~a 509 (868)
++..-|.+.+++++|++++..- ...+.+.|+..-|.++ .+-..+.+++++......++.-
T Consensus 38 tl~~Ry~~~~~~~eAidlL~~g----------------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l 101 (312)
T 2wpv_A 38 TIANRYVRSKSYEHAIELISQG----------------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRL 101 (312)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH----------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHH----------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 3444556666666666665443 1223444444433332 3333344566666555555544
Q ss_pred Hhchhc-----hHHHHHHHHHHHHhCCC--CChhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCceecHHHHHHHHhc---
Q 047992 510 CAYLVA-----SNKVKEIHGCVLRRSLE--SSLPVMNSLIDTYAKSGNIVYSRTIFDGMSSKDIITWNSLICGYVLH--- 579 (868)
Q Consensus 510 ~~~~~~-----~~~~~~i~~~~~~~~~~--~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~--- 579 (868)
+..... ..-.........+.|-. .|+.+...+...|.+.|++.+|+.-|-.-...|...+..|+.-+...
T Consensus 102 ~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~ 181 (312)
T 2wpv_A 102 IAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDD 181 (312)
T ss_dssp HTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCC
Confidence 433221 12222333333343322 38889999999999999999999988643323454555554444333
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhh
Q 047992 580 GFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITEC 630 (868)
Q Consensus 580 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 630 (868)
|...++--..-+ ++| -+.-.|.+..|...|+...+.
T Consensus 182 ~~~~e~dlf~~R--------------aVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 182 IEDSTVAEFFSR--------------LVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp CCHHHHHHHHHH--------------HHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHH--------------HHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 433332111111 111 234568888998888876654
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.06 E-value=52 Score=35.16 Aligned_cols=34 Identities=12% Similarity=0.188 Sum_probs=24.0
Q ss_pred CChhHHHHHHHHHHhc--CCHHHHHHHHhcCCCCCc
Q 047992 533 SSLPVMNSLIDTYAKS--GNIVYSRTIFDGMSSKDI 566 (868)
Q Consensus 533 ~~~~~~~~Li~~y~k~--g~~~~A~~~f~~~~~~d~ 566 (868)
++...+..|+.+|... .+++...+.|.....++.
T Consensus 291 ~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~~ 326 (445)
T 4b4t_P 291 KKLESQESLVKLFTTNELMRWPIVQKTYEPVLNEDD 326 (445)
T ss_dssp HHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTCC
T ss_pred cccHHHHHHHHHHHhchHhhhHHHHHHHHHHhcccc
Confidence 4667788888888764 457778888876655443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 868 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-08 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 3e-05 | |
| d1vcta2 | 94 | d.286.1.1 (A:108-201) Hypothetical protein PH0236, | 7e-04 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.4 bits (132), Expect = 2e-08
Identities = 35/305 (11%), Positives = 86/305 (28%), Gaps = 13/305 (4%)
Query: 202 YVKCGKLIWARRFFE---SMDEKDGVAWNSMISGYFQIGENDEAHRLFDKMCREEIKLGV 258
+ G A R + + + S +FQ D + IK
Sbjct: 9 EYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLA----IKQNP 64
Query: 259 VTFNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKE 318
+ N + E ++ F + A +
Sbjct: 65 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAY 124
Query: 319 MSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEE 378
+S + P+ + S + + L + + ++L +++ E
Sbjct: 125 VSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGE 184
Query: 379 LEAAERVFDM---IKDKDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNVL 435
+ A F+ + + ++ ++ +A +A +++ P + + L
Sbjct: 185 IWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNL 243
Query: 436 ISGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSC 495
Y + G D A+D ++R + ++ +L ++ G A + C
Sbjct: 244 ACVYYEQGLIDLAIDTYRRAIELQ--PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC 301
Query: 496 FYPNC 500
Sbjct: 302 PTHAD 306
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.7 bits (104), Expect = 3e-05
Identities = 43/405 (10%), Positives = 121/405 (29%), Gaps = 64/405 (15%)
Query: 101 YAKCGCLDDAREVFEDMRER---NLYTWSAMIGAYSRDQRWREVVELFFLMVQDGLFPDD 157
+ G + A + + N + + + +R L ++
Sbjct: 9 EYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK------- 61
Query: 158 FLFPKILQACGNCGDFEAGKLMHSLVIKLGMSCVRRVRNSVLAVYVKCGKLIWARRFFES 217
P + +A N G+ + I+ +R + + L+ A +
Sbjct: 62 -QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGA 120
Query: 218 MDEKDGVAWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTFN--------ILIRSYN 269
+ + + + L + L + L +N
Sbjct: 121 VQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFN 180
Query: 270 QLGQCDVAMEMVKRMESLGITPD-VFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNG 328
G+ +A+ ++ ++ + P+ + + + + + +A+ + +
Sbjct: 181 AQGEIWLAIHHFEK--AVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAV 238
Query: 329 VTITSAISACTDLKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEELEAAERVFDM 388
V +L +Y + ++ A +
Sbjct: 239 VH------------------------------------GNLACVYYEQGLIDLAIDTYRR 262
Query: 389 ---IKDKDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNVLISGYIQNGNE 445
++ ++ ++ + G +A + + P + + N L + + GN
Sbjct: 263 AIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALR-LCPTHADSLNNLANIKREQGNI 321
Query: 446 DEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRK 490
+EAV L+++ + A+ ++L + QQ G+ AL +++
Sbjct: 322 EEAVRLYRKALEVFP--EFAAAHSNLASVLQQQGKLQEALMHYKE 364
|
| >d1vcta2 d.286.1.1 (A:108-201) Hypothetical protein PH0236, C-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 94 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: TrkA C-terminal domain-like superfamily: TrkA C-terminal domain-like family: TrkA C-terminal domain-like domain: Hypothetical protein PH0236, C-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 37.7 bits (87), Expect = 7e-04
Identities = 19/92 (20%), Positives = 33/92 (35%), Gaps = 19/92 (20%)
Query: 653 LEEAMEFIEDMPIEPDSSIWEALLTACRIHGNIDLAVLAIER----------LFDLEPGD 702
+ E E I + + P+S I L + N + ++A+ R F + GD
Sbjct: 9 ILEGEEIIGKIQVYPESVIVGKTLGELDLATNTGVWIIAVRRGKRWIFGPNENFKIRAGD 68
Query: 703 VLIQRLILQIYAICGKPEDALKVRKLERENTR 734
VLI G ++++ R R
Sbjct: 69 VLI---------GRGTRTSIDHLKEIARGAIR 91
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 868 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.88 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.83 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.47 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.44 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.93 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.91 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.87 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.83 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.8 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.78 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.78 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.74 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.69 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.56 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.51 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.42 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.37 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.34 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.33 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.26 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.25 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.15 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.14 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.14 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.12 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.11 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 97.95 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.92 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.87 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.78 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.77 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.73 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.66 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.65 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.62 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.61 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.59 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.52 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.48 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.48 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.47 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.46 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.45 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.4 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.37 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.36 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.36 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.31 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.09 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.94 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 96.86 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.7 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.65 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 95.31 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 92.56 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 90.09 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 88.73 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 87.59 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 87.34 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 84.15 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 83.76 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 82.91 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 82.59 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=2.1e-20 Score=201.54 Aligned_cols=181 Identities=12% Similarity=0.176 Sum_probs=154.9
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHH
Q 047992 534 SLPVMNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR-GTFLSIIL 609 (868)
Q Consensus 534 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~ 609 (868)
+...+..+...|...|++++|...|++.. +.+...|..+...|...|++++|++.|++..+ +.|+. .++..+..
T Consensus 202 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~ 279 (388)
T d1w3ba_ 202 FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLAN 279 (388)
T ss_dssp CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHH
T ss_pred cHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 45566777888888888888888887654 45666788888899999999999999999988 66764 67888888
Q ss_pred HhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHH
Q 047992 610 AHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPD-SSIWEALLTACRIHGNIDL 687 (868)
Q Consensus 610 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~-~~~w~~ll~a~~~~~~~~~ 687 (868)
++...|+.++|...|+..... .+.+...+..+..++.+.|++++|.+.+++. ...|+ ..+|..+..++...|+++.
T Consensus 280 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 357 (388)
T d1w3ba_ 280 ALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQE 357 (388)
T ss_dssp HHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHH
T ss_pred HHHHcCCHHHHHHHHHhhhcc--CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999988774 3445667888899999999999999999986 56665 5588999999999999999
Q ss_pred HHHHHHHHhccCCCCchhHHHHHHHHhhcCC
Q 047992 688 AVLAIERLFDLEPGDVLIQRLILQIYAICGK 718 (868)
Q Consensus 688 a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 718 (868)
|...++++++++|+++.+|..|+++|.+.|+
T Consensus 358 A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 358 ALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999998875
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=3.3e-18 Score=183.99 Aligned_cols=351 Identities=13% Similarity=0.072 Sum_probs=254.8
Q ss_pred HHHHcCCCHHHHHHHHHhcCC---CCeehHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCeeehhhHHHHHHhcCCHHH
Q 047992 371 NMYSKCEELEAAERVFDMIKD---KDVYSWNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNVLISGYIQNGNEDE 447 (868)
Q Consensus 371 ~~y~~~g~~~~A~~vf~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 447 (868)
..+.+.|++++|.+.|+.+.+ .++.+|..+...|.+.|++++|+..|++..+.. +-+..+|..+...|.+.|++++
T Consensus 7 ~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~~ 85 (388)
T d1w3ba_ 7 HREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhccccc
Confidence 445556666666666665542 244556666666667777777777777666543 2234566667777777777777
Q ss_pred HHHHHHhcccCCCCCCCeeehhhhHHHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHH
Q 047992 448 AVDLFQRMGKNDKVKRNTASWNSLIAGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVL 527 (868)
Q Consensus 448 A~~~f~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~ 527 (868)
|...+....+.. +.+...+..........+....+............... .............+.............
T Consensus 86 A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (388)
T d1w3ba_ 86 AIEHYRHALRLK--PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLY-CVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCT-HHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred cccccccccccc--cccccccccccccccccccccccccccccccccccccc-cccccccccccccchhhhhHHHHHHhh
Confidence 777777765543 33334444444555555555555555554443322222 222233333444455555555555555
Q ss_pred HhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 047992 528 RRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTF 604 (868)
Q Consensus 528 ~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 604 (868)
.. .+.+...+..+...+...|+.+.|...+++.. +.+...|..+...+...|++++|+..|++....+ ..+...+
T Consensus 163 ~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 240 (388)
T d1w3ba_ 163 ET-QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVH 240 (388)
T ss_dssp HH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHH
T ss_pred cc-CcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHH
Confidence 43 23466778889999999999999999998654 4567789999999999999999999999998842 2344677
Q ss_pred HHHHHHhhccCChHHHHHHHHHhhhhcCCCCC-hhHHHHHHHhhhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHh
Q 047992 605 LSIILAHSLAGMVDLGKKVFCSITECYQIIPM-IEHYSAMIDLYGRSGKLEEAMEFIEDM--PIEPDSSIWEALLTACRI 681 (868)
Q Consensus 605 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lvd~l~r~g~~~eA~~~i~~~--~~~p~~~~w~~ll~a~~~ 681 (868)
..+..++...|++++|..+|+...+. .|+ ...+..+..++...|++++|.+.++.. ..+.+...|..+...+..
T Consensus 241 ~~l~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 317 (388)
T d1w3ba_ 241 GNLACVYYEQGLIDLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT---CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHH
Confidence 77888899999999999999998763 343 567889999999999999999999887 334566788999999999
Q ss_pred cCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHH
Q 047992 682 HGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLER 730 (868)
Q Consensus 682 ~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 730 (868)
.|+++.|...++++++++|+++.++..|+.+|...|++++|.+..+...
T Consensus 318 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 366 (388)
T d1w3ba_ 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI 366 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999877553
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=4.7e-13 Score=139.52 Aligned_cols=193 Identities=13% Similarity=0.115 Sum_probs=133.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH---------
Q 047992 537 VMNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTF--------- 604 (868)
Q Consensus 537 ~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~--------- 604 (868)
.+..+...|.+.|++++|...|++.. +.+...|..++..|...|+.++|++.+++... ..|+...+
T Consensus 55 a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~ 132 (323)
T d1fcha_ 55 AWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLR--YTPAYAHLVTPAEEGAG 132 (323)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TSTTTGGGCC-------
T ss_pred HHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccccccccccchhhHHH--hccchHHHHHhhhhhhh
Confidence 34444444555555555555554322 23344555555555555555555555555554 23322110
Q ss_pred -------HHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCC-HHHHHHH
Q 047992 605 -------LSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPD-SSIWEAL 675 (868)
Q Consensus 605 -------~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~-~~~w~~l 675 (868)
...+..+...+..+++...|....+..+..++...+..+..++.+.|++++|.+.+++. ...|+ ..+|..+
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 212 (323)
T d1fcha_ 133 GAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKL 212 (323)
T ss_dssp --------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhh
Confidence 11112233445677888888877765555566778888999999999999999999987 44454 5689999
Q ss_pred HHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHHh
Q 047992 676 LTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLERE 731 (868)
Q Consensus 676 l~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 731 (868)
...+...|+++.|...++++++++|+++.+|..|+.+|...|++++|.+..+...+
T Consensus 213 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 213 GATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999997665433
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=1.6e-12 Score=135.41 Aligned_cols=150 Identities=11% Similarity=0.064 Sum_probs=115.2
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCC
Q 047992 574 CGYVLHGFWHAALDLFDQMKSFGL-KPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGK 652 (868)
Q Consensus 574 ~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~ 652 (868)
..+...+...+|++.|.+..+... .++...+..+...+...|+.++|+.+|+......+ -+...|..+..+|.+.|+
T Consensus 144 ~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~ 221 (323)
T d1fcha_ 144 GSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP--NDYLLWNKLGATLANGNQ 221 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhccccccccccc--ccccchhhhhhccccccc
Confidence 344455677889999998887321 22345677777888999999999999998876432 235678889999999999
Q ss_pred hHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhH-----------HHHHHHHhhcCCC
Q 047992 653 LEEAMEFIEDM-PIEPD-SSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQ-----------RLILQIYAICGKP 719 (868)
Q Consensus 653 ~~eA~~~i~~~-~~~p~-~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~-----------~~l~~~y~~~g~~ 719 (868)
+++|.+.++++ ...|+ ..+|..|..+|...|+++.|...++++++++|++...+ ..|...+...|++
T Consensus 222 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~ 301 (323)
T d1fcha_ 222 SEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQS 301 (323)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCG
T ss_pred chhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCH
Confidence 99999999987 45554 55899999999999999999999999999999887654 4467777778888
Q ss_pred hhHHHH
Q 047992 720 EDALKV 725 (868)
Q Consensus 720 ~~a~~~ 725 (868)
+.+...
T Consensus 302 d~~~~~ 307 (323)
T d1fcha_ 302 DAYGAA 307 (323)
T ss_dssp GGHHHH
T ss_pred HHHHHH
Confidence 766543
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.93 E-value=1.1e-10 Score=121.91 Aligned_cols=260 Identities=8% Similarity=-0.016 Sum_probs=172.7
Q ss_pred ChhHHHHHHHHhHhCCCCCCeee-hhhHH----------HHHHhcCCHHHHHHHHHhcccCCCCCCCeeehhhhHHHHHh
Q 047992 409 YCGKAYELFIKMQESDVPPNVIT-WNVLI----------SGYIQNGNEDEAVDLFQRMGKNDKVKRNTASWNSLIAGYQQ 477 (868)
Q Consensus 409 ~~~~A~~l~~~m~~~g~~p~~~t-~~~li----------~~~~~~g~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~~~ 477 (868)
..++|++++.+..+. .|+..+ |+..- ..+...|.+++|+..|+...+.. |.+...|..+..++..
T Consensus 44 ~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~--pk~~~~~~~~~~~~~~ 119 (334)
T d1dcea1 44 LDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHHRCWLLSR 119 (334)
T ss_dssp CSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC--CCcHHHHHHhhHHHHH
Confidence 346667777666654 344332 22211 12233445666777777665543 4455555555555554
Q ss_pred cCC--hhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHH-HHHHHHHHhcCCHHHH
Q 047992 478 LGQ--KNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVM-NSLIDTYAKSGNIVYS 554 (868)
Q Consensus 478 ~g~--~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~Li~~y~k~g~~~~A 554 (868)
.+. .++|+..+.++... .| .+...+ ..+...|...|..++|
T Consensus 120 ~~~~~~~~a~~~~~~al~~--~~----------------------------------~~~~~~~~~~~~~~~~~~~~~~A 163 (334)
T d1dcea1 120 LPEPNWARELELCARFLEA--DE----------------------------------RNFHCWDYRRFVAAQAAVAPAEE 163 (334)
T ss_dssp CSSCCHHHHHHHHHHHHHH--CT----------------------------------TCHHHHHHHHHHHHHTCCCHHHH
T ss_pred hccccHHHHHHHHHHHHhh--Cc----------------------------------hhhhhhhhHHHHHHHhccccHHH
Confidence 443 45666666555431 11 123333 3345677778999999
Q ss_pred HHHHhcCCC---CCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhc
Q 047992 555 RTIFDGMSS---KDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECY 631 (868)
Q Consensus 555 ~~~f~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 631 (868)
...++.... .+..+|+.+...+...|++++|+..+++... +.|+... ....+...+..+++...+......
T Consensus 164 l~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~---~~~~~~~l~~~~~a~~~~~~~l~~- 237 (334)
T d1dcea1 164 LAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPEN--VLLKELE---LVQNAFFTDPNDQSAWFYHRWLLG- 237 (334)
T ss_dssp HHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHH--HHHHHHH---HHHHHHHHCSSCSHHHHHHHHHHS-
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHH--hHHHHHH---HHHHHHHhcchhHHHHHHHHHHHh-
Confidence 999987764 4667888888899999998888777666555 3343322 333445567778888888776653
Q ss_pred CCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHH
Q 047992 632 QIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPDSS-IWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLI 709 (868)
Q Consensus 632 ~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~~~-~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l 709 (868)
..+....+..++..+...|+.++|.+.+.+. +..|+.. +|..+..++...|+.+.|...++++++++|.++.+|..|
T Consensus 238 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L 316 (334)
T d1dcea1 238 -RAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 316 (334)
T ss_dssp -CCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred -CcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHH
Confidence 2333444556677777889999999999887 6667554 888898999999999999999999999999999999988
Q ss_pred HHHHhh
Q 047992 710 LQIYAI 715 (868)
Q Consensus 710 ~~~y~~ 715 (868)
+..+..
T Consensus 317 ~~~~~~ 322 (334)
T d1dcea1 317 RSKFLL 322 (334)
T ss_dssp HHHHHH
T ss_pred HHHHhH
Confidence 887664
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.91 E-value=4.2e-08 Score=100.23 Aligned_cols=187 Identities=12% Similarity=0.107 Sum_probs=148.5
Q ss_pred hchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCc-eecHHHHHHHHhcCChHHHHHHH
Q 047992 514 VASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMSS---KDI-ITWNSLICGYVLHGFWHAALDLF 589 (868)
Q Consensus 514 ~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~d~-~~~~~li~~~~~~g~~~~A~~l~ 589 (868)
+..+.+..++...++...+.+..++..++..+.+.|+++.|+.+|+++.. .+. ..|...+..+.+.|..++|.++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 34567788888888765556778899999999999999999999997642 333 36899999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHH-HhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC----C
Q 047992 590 DQMKSFGLKPNRGTFLSIIL-AHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM----P 664 (868)
Q Consensus 590 ~~m~~~g~~p~~~t~~~ll~-a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~----~ 664 (868)
+++++.+.. +...|..... -....|+.+.|..+|+.+.+.++. +...+...++.+.+.|+++.|..++++. |
T Consensus 158 ~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~--~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~ 234 (308)
T d2onda1 158 KKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD--IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp HHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred HHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence 999985322 2233433332 234568999999999999886444 3566889999999999999999999986 4
Q ss_pred CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 047992 665 IEPD--SSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDV 703 (868)
Q Consensus 665 ~~p~--~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~ 703 (868)
..|+ ..+|...+.--..||+.+.+..+.+++.++-|++.
T Consensus 235 ~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~ 275 (308)
T d2onda1 235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcccc
Confidence 5553 45899999988999999999999999999988764
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.87 E-value=7.6e-09 Score=106.07 Aligned_cols=184 Identities=6% Similarity=0.033 Sum_probs=103.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCC-hHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhh
Q 047992 538 MNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGF-WHAALDLFDQMKSFGLKPNR-GTFLSIILAHS 612 (868)
Q Consensus 538 ~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~ 612 (868)
++-+...|.+.+..++|.+.++++. +.+...|+.....+...|. .++|++.+++.++ +.|+. .+|......+.
T Consensus 46 ~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~--~~p~~~~a~~~~~~~~~ 123 (315)
T d2h6fa1 46 YDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIE--EQPKNYQVWHHRRVLVE 123 (315)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHH--HHHhhhhHHHHHhHHHH
Confidence 3444555556666666666666543 3445566666656555543 5666666666665 45543 55555555666
Q ss_pred ccCChHHHHHHHHHhhhhcCCCC-ChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC-----
Q 047992 613 LAGMVDLGKKVFCSITECYQIIP-MIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGN----- 684 (868)
Q Consensus 613 ~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~----- 684 (868)
..|+.++|+.+|+.+.+ +.| +...|.-+..++.+.|++++|.+.++++ ...| +...|+.+.......++
T Consensus 124 ~l~~~~eAl~~~~kal~---~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~ 200 (315)
T d2h6fa1 124 WLRDPSQELEFIADILN---QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRA 200 (315)
T ss_dssp HHTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred hhccHHHHHHHHhhhhh---hhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhh
Confidence 66666666666666655 223 2445555666666666666666666665 3333 34456555444433332
Q ss_pred -HHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHH
Q 047992 685 -IDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRK 727 (868)
Q Consensus 685 -~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 727 (868)
++.|...++++++++|++..+|..++.++...| .+++.+..+
T Consensus 201 ~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~ 243 (315)
T d2h6fa1 201 VLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLN 243 (315)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHH
T ss_pred hhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHH
Confidence 456666666666666666666666666665544 244444433
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.83 E-value=1.3e-08 Score=101.08 Aligned_cols=191 Identities=13% Similarity=-0.037 Sum_probs=118.4
Q ss_pred HhchhchHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHH
Q 047992 510 CAYLVASNKVKEIHGCVLRRSLES-SLPVMNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAA 585 (868)
Q Consensus 510 ~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A 585 (868)
+...|..+.|.+.+..+++ +.| ++.+++.+..+|.+.|++++|...|++.. +.+..+|..+...|...|++++|
T Consensus 47 y~~~g~~~~A~~~~~~al~--l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A 124 (259)
T d1xnfa_ 47 YDSLGLRALARNDFSQALA--IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLA 124 (259)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHH
T ss_pred HHHCCCHHHHHHHHHHhhc--cCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHH
Confidence 3344444444444444444 233 66778888899999999999999998764 44567888888889999999999
Q ss_pred HHHHHHHHHCCCCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhh---cCChHHHHHHHH
Q 047992 586 LDLFDQMKSFGLKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGR---SGKLEEAMEFIE 661 (868)
Q Consensus 586 ~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r---~g~~~eA~~~i~ 661 (868)
++.|++..+ ..|+. .....+..+....+..+....+...... ..+....+......++. .+..+++...+.
T Consensus 125 ~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (259)
T d1xnfa_ 125 QDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK---SDKEQWGWNIVEFYLGNISEQTLMERLKADAT 199 (259)
T ss_dssp HHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH---SCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCC
T ss_pred HHHHHHHHh--hccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc---cchhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999888 45543 3333333444555555555444444443 22222223222222222 222333333322
Q ss_pred hC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHH
Q 047992 662 DM-PIEPDS-SIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQR 707 (868)
Q Consensus 662 ~~-~~~p~~-~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~ 707 (868)
.. ...|+. .+|..|...+...|+++.|...++++++.+|++...|.
T Consensus 200 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 247 (259)
T d1xnfa_ 200 DNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHR 247 (259)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHH
T ss_pred HhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 21 122333 36777888888999999999999999999998876654
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.80 E-value=3.3e-08 Score=101.17 Aligned_cols=209 Identities=10% Similarity=0.048 Sum_probs=130.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCeeehhhHHHHHHhcC-CHHHHHHHHHhcccCCCCCCCeeehhhhHHHH
Q 047992 397 WNSMIAGYCQAGYCGKAYELFIKMQESDVPPNVITWNVLISGYIQNG-NEDEAVDLFQRMGKNDKVKRNTASWNSLIAGY 475 (868)
Q Consensus 397 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g-~~~~A~~~f~~m~~~~~~~~~~~~~~~li~~~ 475 (868)
++-+...+.+.+.+++|+++++++++.. +-+...|+.....+...| ++++|+..++...+.. |.+..+|+.+...+
T Consensus 46 ~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~--p~~~~a~~~~~~~~ 122 (315)
T d2h6fa1 46 YDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ--PKNYQVWHHRRVLV 122 (315)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH--HhhhhHHHHHhHHH
Confidence 4455556667777788888888777664 224456676666766655 4788888888776654 56667777777777
Q ss_pred HhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHH
Q 047992 476 QQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSR 555 (868)
Q Consensus 476 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~ 555 (868)
.+.|++++|++.++++.+. .| .+..+++.+...|.+.|++++|.
T Consensus 123 ~~l~~~~eAl~~~~kal~~--dp----------------------------------~n~~a~~~~~~~~~~~~~~~~Al 166 (315)
T d2h6fa1 123 EWLRDPSQELEFIADILNQ--DA----------------------------------KNYHAWQHRQWVIQEFKLWDNEL 166 (315)
T ss_dssp HHHTCCTTHHHHHHHHHHH--CT----------------------------------TCHHHHHHHHHHHHHHTCCTTHH
T ss_pred HhhccHHHHHHHHhhhhhh--hh----------------------------------cchHHHHHHHHHHHHHHhhHHHH
Confidence 7778877777777777531 12 24556666667777777777777
Q ss_pred HHHhcCC---CCCceecHHHHHHHHhcCC------hHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCChHHHHHHHH
Q 047992 556 TIFDGMS---SKDIITWNSLICGYVLHGF------WHAALDLFDQMKSFGLKPNR-GTFLSIILAHSLAGMVDLGKKVFC 625 (868)
Q Consensus 556 ~~f~~~~---~~d~~~~~~li~~~~~~g~------~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~ 625 (868)
..|+++. +.+..+|+.+...+...|. .++|++.+.+.++ +.|+. ..+..+...+.+.| .+++.+.++
T Consensus 167 ~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~--~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~ 243 (315)
T d2h6fa1 167 QYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK--LVPHNESAWNYLKGILQDRG-LSKYPNLLN 243 (315)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTC-GGGCHHHHH
T ss_pred HHHHHHHHHCCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHH--hCCCchHHHHHHHHHHHhcC-hHHHHHHHH
Confidence 7776554 3455667766655555444 4678888888777 55643 45555544455444 466666666
Q ss_pred HhhhhcCCCCChhHHHHHHHhh
Q 047992 626 SITECYQIIPMIEHYSAMIDLY 647 (868)
Q Consensus 626 ~m~~~~~~~p~~~~y~~lvd~l 647 (868)
...+......+...+..+++.|
T Consensus 244 ~~~~l~~~~~~~~~~~~l~~~y 265 (315)
T d2h6fa1 244 QLLDLQPSHSSPYLIAFLVDIY 265 (315)
T ss_dssp HHHHHTTTCCCHHHHHHHHHHH
T ss_pred HHHHhCCCcCCHHHHHHHHHHH
Confidence 6554322222333445555544
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.78 E-value=2.2e-07 Score=96.52 Aligned_cols=261 Identities=13% Similarity=0.009 Sum_probs=171.6
Q ss_pred HHHHHhcCCHHHHHHHHHhcccCCCCCCC-----eeehhhhHHHHHhcCChhHHHHHHHHhhcCCC-CCCHHhHHHHHHH
Q 047992 436 ISGYIQNGNEDEAVDLFQRMGKNDKVKRN-----TASWNSLIAGYQQLGQKNNALGVFRKMQSSCF-YPNCVTILSVLPA 509 (868)
Q Consensus 436 i~~~~~~g~~~~A~~~f~~m~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a 509 (868)
...+...|++++|.+++++..+.. +.+ ...++.+...|...|++++|+..|++...... .++...
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~~~--~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~------- 89 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALEEL--PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHY------- 89 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTC--CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH-------
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhC--cCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHH-------
Confidence 445667888888888888775543 222 23455566777777777777777776643110 011000
Q ss_pred HhchhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhcCC-------CCC----ceecHHHHHHHHh
Q 047992 510 CAYLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDGMS-------SKD----IITWNSLICGYVL 578 (868)
Q Consensus 510 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~-------~~d----~~~~~~li~~~~~ 578 (868)
....+..+...|...|++..|...+.... .+. ...+..+...+..
T Consensus 90 ------------------------~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 145 (366)
T d1hz4a_ 90 ------------------------ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWA 145 (366)
T ss_dssp ------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHH
T ss_pred ------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHH
Confidence 11233445566777777777777666432 111 1234455667778
Q ss_pred cCChHHHHHHHHHHHHCCCCC----CHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCC-----hhHHHHHHHhhhh
Q 047992 579 HGFWHAALDLFDQMKSFGLKP----NRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPM-----IEHYSAMIDLYGR 649 (868)
Q Consensus 579 ~g~~~~A~~l~~~m~~~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~y~~lvd~l~r 649 (868)
.|+.+.|...+.+........ ...++......+...|..+++...+......+..... ...+.....++..
T Consensus 146 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (366)
T d1hz4a_ 146 WARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQM 225 (366)
T ss_dssp TTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred hcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHh
Confidence 888888888888877632221 1234444555667788888888888766554333222 2234556677888
Q ss_pred cCChHHHHHHHHhC-CCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHh------ccCCCCchhHHHHHHHHhhcC
Q 047992 650 SGKLEEAMEFIEDM-PIEP-----DSSIWEALLTACRIHGNIDLAVLAIERLF------DLEPGDVLIQRLILQIYAICG 717 (868)
Q Consensus 650 ~g~~~eA~~~i~~~-~~~p-----~~~~w~~ll~a~~~~~~~~~a~~~~~~~~------~l~p~~~~~~~~l~~~y~~~g 717 (868)
.|+.++|.+.+++. ...| ....+..+..++...|+.+.|...+++++ ...|....++..++.+|...|
T Consensus 226 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 305 (366)
T d1hz4a_ 226 TGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAG 305 (366)
T ss_dssp TTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCC
Confidence 99999999999887 2222 23466777888899999999999999987 455777788999999999999
Q ss_pred CChhHHHHHHHH
Q 047992 718 KPEDALKVRKLE 729 (868)
Q Consensus 718 ~~~~a~~~~~~m 729 (868)
++++|.+..+..
T Consensus 306 ~~~~A~~~l~~A 317 (366)
T d1hz4a_ 306 RKSDAQRVLLDA 317 (366)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999999976543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.78 E-value=2e-07 Score=96.80 Aligned_cols=294 Identities=11% Similarity=-0.033 Sum_probs=175.8
Q ss_pred HHHHHhcCChhHHHHHHHHhHhCCCCCC----eeehhhHHHHHHhcCCHHHHHHHHHhcccCCCCCC----CeeehhhhH
Q 047992 401 IAGYCQAGYCGKAYELFIKMQESDVPPN----VITWNVLISGYIQNGNEDEAVDLFQRMGKNDKVKR----NTASWNSLI 472 (868)
Q Consensus 401 i~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~----~~~~~~~li 472 (868)
...+...|++++|++++++..+.....+ ...++.+...|...|++++|...|++..+.....+ ....+..+.
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 98 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 98 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 3445666777777777776665421111 12455566777778888888888776643211111 122344455
Q ss_pred HHHHhcCChhHHHHHHHHhhcCCCCCCHHhHHHHHHHHhchhchHHHHHHHHHHHHhCCCC---ChhHHHHHHHHHHhcC
Q 047992 473 AGYQQLGQKNNALGVFRKMQSSCFYPNCVTILSVLPACAYLVASNKVKEIHGCVLRRSLES---SLPVMNSLIDTYAKSG 549 (868)
Q Consensus 473 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~---~~~~~~~Li~~y~k~g 549 (868)
..+...|++..|...+.+.... ....+... ....+..+...|...|
T Consensus 99 ~~~~~~~~~~~a~~~~~~al~~-------------------------------~~~~~~~~~~~~~~~~~~la~~~~~~~ 147 (366)
T d1hz4a_ 99 EILFAQGFLQTAWETQEKAFQL-------------------------------INEQHLEQLPMHEFLVRIRAQLLWAWA 147 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-------------------------------HHHTTCTTSTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------------------------------hHhcccchhhHHHHHHHHHHHHHHHhc
Confidence 5666677777777766654321 00000111 1123445667777788
Q ss_pred CHHHHHHHHhcCCC--------CCceecHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCCH--HHHHHHHHHhhccC
Q 047992 550 NIVYSRTIFDGMSS--------KDIITWNSLICGYVLHGFWHAALDLFDQMKSF----GLKPNR--GTFLSIILAHSLAG 615 (868)
Q Consensus 550 ~~~~A~~~f~~~~~--------~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~--~t~~~ll~a~~~~g 615 (868)
+++.|...+..... ....++..+...+...|...++...+.+.... +..|.. ..+......+...|
T Consensus 148 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (366)
T d1hz4a_ 148 RLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTG 227 (366)
T ss_dssp CHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred chhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcc
Confidence 88888777765431 11224444556667778888888877766541 111111 23344455677888
Q ss_pred ChHHHHHHHHHhhhhcCCCCC--hhHHHHHHHhhhhcCChHHHHHHHHhC-------CCCCCHH-HHHHHHHHHHhcCCH
Q 047992 616 MVDLGKKVFCSITECYQIIPM--IEHYSAMIDLYGRSGKLEEAMEFIEDM-------PIEPDSS-IWEALLTACRIHGNI 685 (868)
Q Consensus 616 ~~~~a~~~~~~m~~~~~~~p~--~~~y~~lvd~l~r~g~~~eA~~~i~~~-------~~~p~~~-~w~~ll~a~~~~~~~ 685 (868)
..++|..++........-.+. ...+..+..++...|++++|.+.+++. ...|+.. +|..+...+...|+.
T Consensus 228 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 307 (366)
T d1hz4a_ 228 DKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRK 307 (366)
T ss_dssp CHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred cHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCH
Confidence 888888888876543222221 234555777888899999998888765 3344433 677778888899999
Q ss_pred HHHHHHHHHHhccCCCCc---------hhHHHHHHHHhhcCCChhHHHH
Q 047992 686 DLAVLAIERLFDLEPGDV---------LIQRLILQIYAICGKPEDALKV 725 (868)
Q Consensus 686 ~~a~~~~~~~~~l~p~~~---------~~~~~l~~~y~~~g~~~~a~~~ 725 (868)
+.|...+++++++.+... ..+..+...+...|+.+|+.+-
T Consensus 308 ~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~~ 356 (366)
T d1hz4a_ 308 SDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQH 356 (366)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 999999999988765321 1223344456677888888764
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.74 E-value=1e-08 Score=102.00 Aligned_cols=190 Identities=13% Similarity=0.038 Sum_probs=137.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHh
Q 047992 536 PVMNSLIDTYAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR-GTFLSIILAH 611 (868)
Q Consensus 536 ~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~ 611 (868)
.++..+...|.+.|++++|...|++.. +.++.+|+.+..+|...|++++|++.|++.++ +.|+. .++..+..++
T Consensus 38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~ 115 (259)
T d1xnfa_ 38 QLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIAL 115 (259)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHH--HHhhhhhhHHHHHHHH
Confidence 456678899999999999999999754 56788999999999999999999999999999 67765 6788888899
Q ss_pred hccCChHHHHHHHHHhhhhcCCCCC-hhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHH----HhcCCH
Q 047992 612 SLAGMVDLGKKVFCSITECYQIIPM-IEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPDSSIWEALLTAC----RIHGNI 685 (868)
Q Consensus 612 ~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~~~~w~~ll~a~----~~~~~~ 685 (868)
...|+.++|...|+...+. .|+ ......+...+.+.+..+.+..+.... ...++...|. ++..+ ...+..
T Consensus 116 ~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 191 (259)
T d1xnfa_ 116 YYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWN-IVEFYLGNISEQTLM 191 (259)
T ss_dssp HHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHH
T ss_pred HHHhhHHHHHHHHHHHHhh---ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhh-HHHHHHHHHHHHHHH
Confidence 9999999999999988774 333 333333444445555555544443333 1112221222 11111 122335
Q ss_pred HHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHHh
Q 047992 686 DLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLERE 731 (868)
Q Consensus 686 ~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 731 (868)
+.+.........+.|+.+.+|..|+.+|...|++++|.+..+....
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 237 (259)
T d1xnfa_ 192 ERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 237 (259)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5555555566667788888999999999999999999998876543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.69 E-value=5.5e-07 Score=91.65 Aligned_cols=182 Identities=11% Similarity=-0.002 Sum_probs=143.7
Q ss_pred hcCCHHHHHHHHhcC----CCCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHhhccCChHHH
Q 047992 547 KSGNIVYSRTIFDGM----SSKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPN--RGTFLSIILAHSLAGMVDLG 620 (868)
Q Consensus 547 k~g~~~~A~~~f~~~----~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a 620 (868)
..+..++|..+|++. .+.+...|...+..+...|+.++|..+|+++++ ..|. ...|...+..+.+.|.+++|
T Consensus 76 ~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~--~~~~~~~~~w~~~~~~~~~~~~~~~a 153 (308)
T d2onda1 76 AKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSG 153 (308)
T ss_dssp HHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHH
T ss_pred cccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH--HhcCChHHHHHHHHHHHHHcCChHHH
Confidence 344568888898864 345667899999999999999999999999998 4553 35688899999999999999
Q ss_pred HHHHHHhhhhcCCCCChhHHHHHHHhh-hhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 047992 621 KKVFCSITECYQIIPMIEHYSAMIDLY-GRSGKLEEAMEFIEDM--PIEPDSSIWEALLTACRIHGNIDLAVLAIERLFD 697 (868)
Q Consensus 621 ~~~~~~m~~~~~~~p~~~~y~~lvd~l-~r~g~~~eA~~~i~~~--~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~ 697 (868)
+++|..+.+.... +...|...+... ...|..+.|..+++++ ..+.+...|..++.-....|+++.|+.+++++++
T Consensus 154 r~i~~~al~~~~~--~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~ 231 (308)
T d2onda1 154 RMIFKKAREDART--RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT 231 (308)
T ss_dssp HHHHHHHHTSTTC--CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC--cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 9999998874333 334454444443 3468999999999988 2334567999999999999999999999999999
Q ss_pred cCCCCch----hHHHHHHHHhhcCCChhHHHHHHHHHhc
Q 047992 698 LEPGDVL----IQRLILQIYAICGKPEDALKVRKLEREN 732 (868)
Q Consensus 698 l~p~~~~----~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 732 (868)
..|.++. .|..........|+.+.+.++.+.+.+.
T Consensus 232 ~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 232 SGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp SSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8876654 5666666667889999999998887654
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.56 E-value=1.2e-08 Score=105.89 Aligned_cols=210 Identities=6% Similarity=-0.116 Sum_probs=154.5
Q ss_pred hhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC--CHHHHHHHHhcCC---CCCceecHHH-HHHHHhcCChHHHH
Q 047992 513 LVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSG--NIVYSRTIFDGMS---SKDIITWNSL-ICGYVLHGFWHAAL 586 (868)
Q Consensus 513 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g--~~~~A~~~f~~~~---~~d~~~~~~l-i~~~~~~g~~~~A~ 586 (868)
.+.++.+...+..+++. .+.+...+..+...+...| ++++|...++++. +++...|... ...+...|..++|+
T Consensus 86 ~~~~~~al~~~~~~l~~-~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al 164 (334)
T d1dcea1 86 AALVKAELGFLESCLRV-NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEEL 164 (334)
T ss_dssp HHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHh-CCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHH
Confidence 34456666666666663 2336667777777777765 4889999998764 4566666544 46677789999999
Q ss_pred HHHHHHHHCCCCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC--
Q 047992 587 DLFDQMKSFGLKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-- 663 (868)
Q Consensus 587 ~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-- 663 (868)
+.++++++ ..|+. ..+..+..++...|+.++|...+....+. .|. .......+...+..++|...+.+.
T Consensus 165 ~~~~~~i~--~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~ 236 (334)
T d1dcea1 165 AFTDSLIT--RNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV---LLK---ELELVQNAFFTDPNDQSAWFYHRWLL 236 (334)
T ss_dssp HHHHTTTT--TTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH---HHH---HHHHHHHHHHHCSSCSHHHHHHHHHH
T ss_pred HHHHHHHH--cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh---HHH---HHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 99999988 56754 67778888888899988887666554442 121 122334455667777777777665
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHHh
Q 047992 664 PIEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLERE 731 (868)
Q Consensus 664 ~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 731 (868)
..+++...+..+...+...++.+.|...+.++++.+|+++.+|..++++|...|++++|.+..+...+
T Consensus 237 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ 304 (334)
T d1dcea1 237 GRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 304 (334)
T ss_dssp SCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH
T ss_pred hCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 22334446667777788889999999999999999999999999999999999999999998876644
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.51 E-value=7.1e-07 Score=83.38 Aligned_cols=143 Identities=9% Similarity=-0.038 Sum_probs=108.2
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCChHHH
Q 047992 542 IDTYAKSGNIVYSRTIFDGMSSKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR-GTFLSIILAHSLAGMVDLG 620 (868)
Q Consensus 542 i~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a 620 (868)
...+...|+++.|.+.|+++.+++...|..+...|...|++++|++.|++.++ +.|+. ..|..+..++.+.|+.++|
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~--ldp~~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RDKHLAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHH--HhhhhhhhHHHHHHHHHhhccHHHH
Confidence 55678899999999999999999999999999999999999999999999999 67765 7788888889999999999
Q ss_pred HHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccC
Q 047992 621 KKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPIEPD-SSIWEALLTACRIHGNIDLAVLAIERLFDLE 699 (868)
Q Consensus 621 ~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~~~~p~-~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~ 699 (868)
+..|+.......-.+... | ...| ...+++ ..+|..+..++...|+++.|...+++++++.
T Consensus 90 ~~~~~kAl~~~~~n~~~~-~-------~~~~-----------~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 90 IKDLKEALIQLRGNQLID-Y-------KILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp HHHHHHHHHTTTTCSEEE-C-------GGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCccCchHH-H-------HHhh-----------hhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 999998765211111100 0 0000 011122 2255667777888899999999999999888
Q ss_pred CCCchh
Q 047992 700 PGDVLI 705 (868)
Q Consensus 700 p~~~~~ 705 (868)
|+....
T Consensus 151 ~~~~~~ 156 (192)
T d1hh8a_ 151 SEPRHS 156 (192)
T ss_dssp CSGGGG
T ss_pred CCcchH
Confidence 875433
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.42 E-value=4.8e-07 Score=85.47 Aligned_cols=95 Identities=12% Similarity=0.014 Sum_probs=62.7
Q ss_pred CChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHH
Q 047992 635 PMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQI 712 (868)
Q Consensus 635 p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~ 712 (868)
|+.+-+.-.+..|.+.|++++|++.++++ ...| ++.+|..+..++...|+++.|...++++++++|+++.+|..++.+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~ 81 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHH
Confidence 44555555566666667777777766655 3333 344666666677777777777777777777777777777777777
Q ss_pred HhhcCCChhHHHHHHHH
Q 047992 713 YAICGKPEDALKVRKLE 729 (868)
Q Consensus 713 y~~~g~~~~a~~~~~~m 729 (868)
|...|++++|....+..
T Consensus 82 ~~~l~~~~~A~~~~~~a 98 (201)
T d2c2la1 82 QLEMESYDEAIANLQRA 98 (201)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHH
Confidence 77777777777655543
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.37 E-value=1.7e-06 Score=73.29 Aligned_cols=102 Identities=14% Similarity=0.076 Sum_probs=59.8
Q ss_pred hhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 047992 611 HSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLA 688 (868)
Q Consensus 611 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a 688 (868)
+...|++++|+.+|+...+.. +-+...|..+..+|...|++++|++.++++ .+.| ++..|..+..++...|+++.|
T Consensus 13 ~~~~g~~~eAi~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A 90 (117)
T d1elwa_ 13 ALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEA 90 (117)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcC--CcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHHH
Confidence 444455555555555444321 112334555555566666666666666555 2223 444666677777777777777
Q ss_pred HHHHHHHhccCCCCchhHHHHHHHHh
Q 047992 689 VLAIERLFDLEPGDVLIQRLILQIYA 714 (868)
Q Consensus 689 ~~~~~~~~~l~p~~~~~~~~l~~~y~ 714 (868)
...++++++++|+++.++..++++.+
T Consensus 91 ~~~~~~a~~~~p~~~~~~~~l~~l~~ 116 (117)
T d1elwa_ 91 KRTYEEGLKHEANNPQLKEGLQNMEA 116 (117)
T ss_dssp HHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence 77777777777777777777666543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.34 E-value=2.2e-07 Score=78.22 Aligned_cols=87 Identities=18% Similarity=0.162 Sum_probs=78.0
Q ss_pred HHHHhhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCC
Q 047992 642 AMIDLYGRSGKLEEAMEFIEDM-PIEPD-SSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKP 719 (868)
Q Consensus 642 ~lvd~l~r~g~~~eA~~~i~~~-~~~p~-~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~ 719 (868)
-+...+.+.|++++|+..+++. ...|+ +.+|..|..++...|+++.|+..++++++++|+++.++..|+.+|...|++
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCH
Confidence 3566788899999999999987 45564 669999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHH
Q 047992 720 EDALKVRKL 728 (868)
Q Consensus 720 ~~a~~~~~~ 728 (868)
++|.+..+.
T Consensus 101 ~~A~~~l~~ 109 (112)
T d1hxia_ 101 NAALASLRA 109 (112)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999997654
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.33 E-value=1.3e-06 Score=74.08 Aligned_cols=89 Identities=12% Similarity=0.085 Sum_probs=79.5
Q ss_pred HHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCCh
Q 047992 643 MIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPE 720 (868)
Q Consensus 643 lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~ 720 (868)
-...+.+.|++++|++.+++. ...| ++.+|..+..++...|+++.|...++++++++|+++.+|..++.+|...|+++
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHH
Confidence 356678899999999999998 4444 56689999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHh
Q 047992 721 DALKVRKLERE 731 (868)
Q Consensus 721 ~a~~~~~~m~~ 731 (868)
+|.+..+...+
T Consensus 89 ~A~~~~~~a~~ 99 (117)
T d1elwa_ 89 EAKRTYEEGLK 99 (117)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 99998876543
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.26 E-value=4.6e-06 Score=77.69 Aligned_cols=115 Identities=12% Similarity=-0.018 Sum_probs=83.8
Q ss_pred hhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHH
Q 047992 611 HSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPD-SSIWEALLTACRIHGNIDLA 688 (868)
Q Consensus 611 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~-~~~w~~ll~a~~~~~~~~~a 688 (868)
+...|++++|++.|+.+ .+|+...|..+..++...|++++|++.+++. .+.|+ +..|..+..++...|+++.|
T Consensus 15 ~~~~~d~~~Al~~~~~i-----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 15 AADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHCCCHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHH
Confidence 34556666666666543 2345555666777777777777777777766 34454 55888888888899999999
Q ss_pred HHHHHHHhccCCCCc----------------hhHHHHHHHHhhcCCChhHHHHHHHHH
Q 047992 689 VLAIERLFDLEPGDV----------------LIQRLILQIYAICGKPEDALKVRKLER 730 (868)
Q Consensus 689 ~~~~~~~~~l~p~~~----------------~~~~~l~~~y~~~g~~~~a~~~~~~m~ 730 (868)
...++++++..|.+. ..+..++.+|...|+|++|.+..+...
T Consensus 90 ~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~ 147 (192)
T d1hh8a_ 90 IKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 147 (192)
T ss_dssp HHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999988766553 345678999999999999999766554
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.25 E-value=1.5e-06 Score=73.96 Aligned_cols=108 Identities=12% Similarity=-0.029 Sum_probs=77.4
Q ss_pred HHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCCh---HHHHHHHHhC-CCCCCH---HHHHHHHHH
Q 047992 606 SIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKL---EEAMEFIEDM-PIEPDS---SIWEALLTA 678 (868)
Q Consensus 606 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~---~eA~~~i~~~-~~~p~~---~~w~~ll~a 678 (868)
.+++.+...+++++|.+.|+..... -+.+.+++.-+..+|.+.++. ++|+++++++ ...|++ .+|..|..+
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~--~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAA--GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 3455555666667777777666552 222445566666677665544 4688888876 444543 278889999
Q ss_pred HHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhh
Q 047992 679 CRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAI 715 (868)
Q Consensus 679 ~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 715 (868)
|...|+++.|+..++++++++|+|..+..++..|..+
T Consensus 82 y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~ 118 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKA 118 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999988888776543
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.15 E-value=1.8e-06 Score=81.28 Aligned_cols=116 Identities=9% Similarity=-0.070 Sum_probs=77.8
Q ss_pred CCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHH
Q 047992 599 PNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPD-SSIWEALL 676 (868)
Q Consensus 599 p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~-~~~w~~ll 676 (868)
|+...+......+...|++++|+.+|+...+. .+.+...|..+..+|.+.|++++|++.++++ .+.|+ ...|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence 44444445555555666666666666555442 1223445666677777777777777777776 55665 44888888
Q ss_pred HHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhc
Q 047992 677 TACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAIC 716 (868)
Q Consensus 677 ~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 716 (868)
.++...|+++.|...++++++++|++...+..+.+.+...
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~~ 119 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI 119 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 8889999999999999999999987776665555444443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.14 E-value=4e-06 Score=76.32 Aligned_cols=134 Identities=9% Similarity=0.038 Sum_probs=98.3
Q ss_pred ecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhh
Q 047992 568 TWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLY 647 (868)
Q Consensus 568 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l 647 (868)
.+......+.+.|++++|++.|++.++. -|.... ..+.-......+. ...|..+..+|
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~--~~~~~~------------~~~~~~~~~~~~~--------~~~~~nla~~y 72 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESS------------FSNEEAQKAQALR--------LASHLNLAMCH 72 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCC------------CCSHHHHHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhccc------------cchHHHhhhchhH--------HHHHHHHHHHH
Confidence 3445566778889999999999888762 221110 0011111111111 12466678889
Q ss_pred hhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHH
Q 047992 648 GRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDAL 723 (868)
Q Consensus 648 ~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~ 723 (868)
.+.|++++|++.+++. ...| ++.+|..+..++...|+++.|...++++++++|+|+.+...++.++...++..+..
T Consensus 73 ~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e 150 (170)
T d1p5qa1 73 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE 150 (170)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999887 4556 56689999999999999999999999999999999999999999988877666554
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.14 E-value=2.7e-06 Score=76.61 Aligned_cols=102 Identities=12% Similarity=-0.026 Sum_probs=50.2
Q ss_pred HHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHH
Q 047992 609 LAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPDS-SIWEALLTACRIHGNID 686 (868)
Q Consensus 609 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~~-~~w~~ll~a~~~~~~~~ 686 (868)
..+...|++++|...|+...+.. +-+...|..+..+|...|++++|.+.++++ ...|+. .+|..+..++...|+++
T Consensus 18 n~~~~~~~y~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~ 95 (159)
T d1a17a_ 18 NDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 95 (159)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHhhhccccc--hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHH
Confidence 34455555555555555554421 112334445555555555555555555544 223332 35555555555555555
Q ss_pred HHHHHHHHHhccCCCCchhHHHHHHH
Q 047992 687 LAVLAIERLFDLEPGDVLIQRLILQI 712 (868)
Q Consensus 687 ~a~~~~~~~~~l~p~~~~~~~~l~~~ 712 (868)
.|...++++++++|+++.++..+..+
T Consensus 96 eA~~~~~~a~~~~p~~~~~~~~l~~~ 121 (159)
T d1a17a_ 96 AALRDYETVVKVKPHDKDAKMKYQEC 121 (159)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 55555555555555555554444433
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.12 E-value=3.8e-06 Score=75.65 Aligned_cols=90 Identities=16% Similarity=0.067 Sum_probs=60.7
Q ss_pred cHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCC-hhHHHHHHHh
Q 047992 569 WNSLICGYVLHGFWHAALDLFDQMKSFGLKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPM-IEHYSAMIDL 646 (868)
Q Consensus 569 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lvd~ 646 (868)
+......|.+.|++++|+..|++.++ +.|+. ..|..+..++...|++++|...|+...+. .|+ ...|..++.+
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~---~p~~~~a~~~~g~~ 87 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL---DKKYIKGYYRRAAS 87 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccc--cchhhhhhhhhhHHHHHhccccchHHHHHHHHHHH---cccchHHHHHHHHH
Confidence 44455566777777777777777777 45644 55556666677777777777777777652 233 3566667777
Q ss_pred hhhcCChHHHHHHHHhC
Q 047992 647 YGRSGKLEEAMEFIEDM 663 (868)
Q Consensus 647 l~r~g~~~eA~~~i~~~ 663 (868)
+...|++++|.+.+++.
T Consensus 88 ~~~~g~~~eA~~~~~~a 104 (159)
T d1a17a_ 88 NMALGKFRAALRDYETV 104 (159)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHH
Confidence 77777777777777766
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.11 E-value=1.2e-05 Score=80.48 Aligned_cols=190 Identities=8% Similarity=-0.079 Sum_probs=127.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCC-----CC----ceecHHHHHHHHhcCChHHHHHHHHHHHHCC---CCCC--HHH
Q 047992 538 MNSLIDTYAKSGNIVYSRTIFDGMSS-----KD----IITWNSLICGYVLHGFWHAALDLFDQMKSFG---LKPN--RGT 603 (868)
Q Consensus 538 ~~~Li~~y~k~g~~~~A~~~f~~~~~-----~d----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~p~--~~t 603 (868)
|.-..++|..+|++++|.+.|.+... .+ ..+|+.+...|.+.|++++|++.+++..+.- -.+. ..+
T Consensus 40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 119 (290)
T d1qqea_ 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (290)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence 44557789999999999999986642 22 3478889999999999999999999876521 1111 244
Q ss_pred HHHHHHHhh-ccCChHHHHHHHHHhhhhcCCCCC----hhHHHHHHHhhhhcCChHHHHHHHHhC----CCCC----CH-
Q 047992 604 FLSIILAHS-LAGMVDLGKKVFCSITECYQIIPM----IEHYSAMIDLYGRSGKLEEAMEFIEDM----PIEP----DS- 669 (868)
Q Consensus 604 ~~~ll~a~~-~~g~~~~a~~~~~~m~~~~~~~p~----~~~y~~lvd~l~r~g~~~eA~~~i~~~----~~~p----~~- 669 (868)
+..+...|. ..|++++|..+|....+.+....+ ...|..+.+++...|++++|.+.+++. +..+ ..
T Consensus 120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~ 199 (290)
T d1qqea_ 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199 (290)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHH
Confidence 555565664 469999999999987654322222 335777899999999999999999886 1111 11
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchh--HHHHHH---HHhh--cCCChhHHHHHH
Q 047992 670 SIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLI--QRLILQ---IYAI--CGKPEDALKVRK 727 (868)
Q Consensus 670 ~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~--~~~l~~---~y~~--~g~~~~a~~~~~ 727 (868)
..+..++-.+...|+.+.|...++++.+++|..+.. +.++.+ .|.. .+++++|.+..+
T Consensus 200 ~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~ 264 (290)
T d1qqea_ 200 DYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFD 264 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 133444455667899999999999999999965433 333333 3333 345677766553
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.95 E-value=3.5e-05 Score=76.96 Aligned_cols=170 Identities=9% Similarity=-0.009 Sum_probs=126.8
Q ss_pred CHHHHHHHHhcCCCCCceecHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHhhccCChHHHHHHH
Q 047992 550 NIVYSRTIFDGMSSKDIITWNSLICGYVLHGFWHAALDLFDQMKSF----GLKPNR-GTFLSIILAHSLAGMVDLGKKVF 624 (868)
Q Consensus 550 ~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~ 624 (868)
++++|..+|.+ ....|...|++++|++.|.+..+. +-.|+. .+|..+..++...|+.++|..++
T Consensus 32 ~~~~Aa~~y~~-----------aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~ 100 (290)
T d1qqea_ 32 KFEEAADLCVQ-----------AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (290)
T ss_dssp HHHHHHHHHHH-----------HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHH-----------HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 35666665544 467888999999999999998762 222332 57788888999999999999999
Q ss_pred HHhhhhcCCCCC----hhHHHHHHHhhhh-cCChHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCCHHHHHHH
Q 047992 625 CSITECYQIIPM----IEHYSAMIDLYGR-SGKLEEAMEFIEDM----PIEPD----SSIWEALLTACRIHGNIDLAVLA 691 (868)
Q Consensus 625 ~~m~~~~~~~p~----~~~y~~lvd~l~r-~g~~~eA~~~i~~~----~~~p~----~~~w~~ll~a~~~~~~~~~a~~~ 691 (868)
+...+-+.-..+ ...+..+..+|.. .|++++|.+.++++ +...+ ..++..+...+...|+++.|...
T Consensus 101 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~ 180 (290)
T d1qqea_ 101 ENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDI 180 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHH
Confidence 987664433322 3345556666644 69999999999876 11222 23677888889999999999999
Q ss_pred HHHHhccCCCCch-------hHHHHHHHHhhcCCChhHHHHHHHHH
Q 047992 692 IERLFDLEPGDVL-------IQRLILQIYAICGKPEDALKVRKLER 730 (868)
Q Consensus 692 ~~~~~~l~p~~~~-------~~~~l~~~y~~~g~~~~a~~~~~~m~ 730 (868)
++++.+..|.++. .+..++.+|...|+++.|.+......
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~ 226 (290)
T d1qqea_ 181 YSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQ 226 (290)
T ss_dssp HHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGG
T ss_pred HHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 9999999988763 34567778888999999988877553
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.92 E-value=1.5e-05 Score=72.37 Aligned_cols=82 Identities=12% Similarity=0.088 Sum_probs=69.9
Q ss_pred hHHHHHHHhhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhh
Q 047992 638 EHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPD-SSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAI 715 (868)
Q Consensus 638 ~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~-~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 715 (868)
..|..+..++.+.|++++|+..++++ .+.|+ +.+|..+..++...|+++.|...++++++++|+|+.++..|..++..
T Consensus 78 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~ 157 (169)
T d1ihga1 78 SCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQK 157 (169)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 35666788899999999999999987 66665 44899999999999999999999999999999999999999888765
Q ss_pred cCCC
Q 047992 716 CGKP 719 (868)
Q Consensus 716 ~g~~ 719 (868)
..+.
T Consensus 158 l~~~ 161 (169)
T d1ihga1 158 IKAQ 161 (169)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.87 E-value=3.8e-05 Score=69.46 Aligned_cols=91 Identities=9% Similarity=0.066 Sum_probs=74.3
Q ss_pred HHHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhc
Q 047992 639 HYSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAIC 716 (868)
Q Consensus 639 ~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 716 (868)
.|.-+.-+|.+.|++++|++.+++. ...| +...|..+..++...|+++.|...++++++++|+|+.+...+..+....
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~ 145 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKA 145 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 3555777888999999999999887 3444 4558889999999999999999999999999999999999999998887
Q ss_pred CCChhH-HHHHHHH
Q 047992 717 GKPEDA-LKVRKLE 729 (868)
Q Consensus 717 g~~~~a-~~~~~~m 729 (868)
++..+. .++.+.|
T Consensus 146 ~~~~e~~kk~~~~~ 159 (168)
T d1kt1a1 146 KEHNERDRRTYANM 159 (168)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHH
Confidence 766543 3344444
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.78 E-value=5.9e-05 Score=68.29 Aligned_cols=108 Identities=6% Similarity=-0.139 Sum_probs=75.8
Q ss_pred HHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 047992 606 SIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPIEPDSSIWEALLTACRIHGNI 685 (868)
Q Consensus 606 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~~~~p~~~~w~~ll~a~~~~~~~ 685 (868)
.....+...|++++|+..|+...+..+..+..... .......+ -..++..+..+|...|++
T Consensus 18 ~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~------------~~~~~~~~-------~~~~~~nla~~y~k~~~~ 78 (170)
T d1p5qa1 18 ERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNE------------EAQKAQAL-------RLASHLNLAMCHLKLQAF 78 (170)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSH------------HHHHHHHH-------HHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchH------------HHhhhchh-------HHHHHHHHHHHHHhhhhc
Confidence 34446666777777777777665533322221100 00000000 023566677778899999
Q ss_pred HHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHHhc
Q 047992 686 DLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLEREN 732 (868)
Q Consensus 686 ~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 732 (868)
+.|+..++++++++|+++.+|..++.+|...|++++|....+...+.
T Consensus 79 ~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 79 SAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999988876543
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.77 E-value=8.5e-05 Score=65.81 Aligned_cols=126 Identities=10% Similarity=0.018 Sum_probs=91.1
Q ss_pred eecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHh
Q 047992 567 ITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDL 646 (868)
Q Consensus 567 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~ 646 (868)
..+......+.+.|++.+|+..|++.+.. -|.... ..-......... .....|.-+..+
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~--~~~~~~-----------~~~~~~~~~~~~--------~~~~~~~Nla~~ 76 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEE-----------WDDQILLDKKKN--------IEISCNLNLATC 76 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTT-----------CCCHHHHHHHHH--------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--Ccchhh-----------hhhHHHHHhhhh--------HHHHHHhhHHHH
Confidence 45666777888999999999999998862 221100 000000011111 112356678888
Q ss_pred hhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHH
Q 047992 647 YGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIY 713 (868)
Q Consensus 647 l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y 713 (868)
|.+.|++++|++.++++ ...| +..+|..+..++...|+++.|...++++++++|+|+.+...+..+.
T Consensus 77 ~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~ 145 (153)
T d2fbna1 77 YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV 145 (153)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 99999999999999987 5556 4559999999999999999999999999999999999888877654
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.73 E-value=3.3e-05 Score=66.18 Aligned_cols=89 Identities=10% Similarity=0.049 Sum_probs=73.7
Q ss_pred HHHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchh-------HHHHH
Q 047992 640 YSAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLI-------QRLIL 710 (868)
Q Consensus 640 y~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~-------~~~l~ 710 (868)
+--+.+.+.+.|++++|++.+++. ...| +..+|..+..++...|+++.|...++++++++|+++.. |..++
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 334677788899999999998887 3444 56689999999999999999999999999999988764 45567
Q ss_pred HHHhhcCCChhHHHHHHH
Q 047992 711 QIYAICGKPEDALKVRKL 728 (868)
Q Consensus 711 ~~y~~~g~~~~a~~~~~~ 728 (868)
.++...|++++|.+..+.
T Consensus 87 ~~~~~~~~~~~A~~~~~k 104 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNK 104 (128)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHH
Confidence 788889999999997654
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.66 E-value=0.0066 Score=60.31 Aligned_cols=45 Identities=20% Similarity=0.203 Sum_probs=25.6
Q ss_pred hhhHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHcCCCHHHHHHHHHh
Q 047992 341 LKALAMGMEIHSLAVKMGFTDDVLVGNSLINMYSKCEELEAAERVFDM 388 (868)
Q Consensus 341 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~vf~~ 388 (868)
.+++...+..+......+ +..+.++|...|...++++.-++..+.
T Consensus 261 ~~~l~li~p~Le~v~~~n---~~~vn~al~~lyie~~d~~~l~~~i~~ 305 (336)
T d1b89a_ 261 VKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQALRTSIDA 305 (336)
T ss_dssp TTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHcC---hHHHHHHHHHHHhCcchhHHHHHHHHH
Confidence 334444444454444333 345777788888887776665555443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.65 E-value=0.0031 Score=62.85 Aligned_cols=46 Identities=20% Similarity=0.115 Sum_probs=26.6
Q ss_pred chhchHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhc
Q 047992 512 YLVASNKVKEIHGCVLRRSLESSLPVMNSLIDTYAKSGNIVYSRTIFDG 560 (868)
Q Consensus 512 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~ 560 (868)
+.+.+...+..+..+...+ +..+.++|.+.|...++.+.-++..+.
T Consensus 260 k~~~l~li~p~Le~v~~~n---~~~vn~al~~lyie~~d~~~l~~~i~~ 305 (336)
T d1b89a_ 260 KVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQALRTSIDA 305 (336)
T ss_dssp HTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHcC---hHHHHHHHHHHHhCcchhHHHHHHHHH
Confidence 3344444445554444333 446788888888888886554444433
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.62 E-value=7.3e-06 Score=72.19 Aligned_cols=118 Identities=11% Similarity=0.011 Sum_probs=72.1
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChH
Q 047992 576 YVLHGFWHAALDLFDQMKSFGLKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLE 654 (868)
Q Consensus 576 ~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~ 654 (868)
|-+.+.+++|++.|++..+ +.|+. ..+..+..++...+....+.+ ..+.++
T Consensus 7 ~~r~~~fe~A~~~~e~al~--~~P~~~~~~~~~g~~l~~~~~~~~~~e--------------------------~~~~~~ 58 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISD--------------------------AKQMIQ 58 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHH--------------------------HHHHHH
T ss_pred HHHHccHHHHHHHHHHHHh--hCCcchHHHHHHHHHHHHhhhhhhhhH--------------------------HHHHHH
Confidence 3445667888888888888 66765 444455545544333322221 112344
Q ss_pred HHHHHHHhC-CCCCC-HHHHHHHHHHHHhc-----------CCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChh
Q 047992 655 EAMEFIEDM-PIEPD-SSIWEALLTACRIH-----------GNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPED 721 (868)
Q Consensus 655 eA~~~i~~~-~~~p~-~~~w~~ll~a~~~~-----------~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~ 721 (868)
+|++.++++ .+.|+ ..+|..+..++... ++++.|...++++++++|+++.++..|+......+.+.+
T Consensus 59 ~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e 138 (145)
T d1zu2a1 59 EAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAE 138 (145)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 555555554 33443 33666666555443 346889999999999999999998888877544443333
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.61 E-value=1.3e-05 Score=67.86 Aligned_cols=91 Identities=11% Similarity=-0.058 Sum_probs=73.7
Q ss_pred HHHHHhhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh---cCCHHHHHHHHHHHhccCCCCc--hhHHHHHHHH
Q 047992 641 SAMIDLYGRSGKLEEAMEFIEDM-PIEP-DSSIWEALLTACRI---HGNIDLAVLAIERLFDLEPGDV--LIQRLILQIY 713 (868)
Q Consensus 641 ~~lvd~l~r~g~~~eA~~~i~~~-~~~p-~~~~w~~ll~a~~~---~~~~~~a~~~~~~~~~l~p~~~--~~~~~l~~~y 713 (868)
..++..+...+++++|++.+++. ...| ++.++..+..++.. .++++.|...++++++.+|.+. .++..||.+|
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 45677778889999999999998 4555 45577777777654 4566789999999999998653 4789999999
Q ss_pred hhcCCChhHHHHHHHHHh
Q 047992 714 AICGKPEDALKVRKLERE 731 (868)
Q Consensus 714 ~~~g~~~~a~~~~~~m~~ 731 (868)
...|++++|.+..+...+
T Consensus 83 ~~~g~~~~A~~~~~~aL~ 100 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQ 100 (122)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHH
Confidence 999999999998877654
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.59 E-value=0.0029 Score=61.42 Aligned_cols=178 Identities=11% Similarity=-0.023 Sum_probs=106.2
Q ss_pred CHHHHHHHHhcCCC-CCceecHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh--hccCChHHHHH
Q 047992 550 NIVYSRTIFDGMSS-KDIITWNSLICGYVL----HGFWHAALDLFDQMKSFGLKPNRGTFLSIILAH--SLAGMVDLGKK 622 (868)
Q Consensus 550 ~~~~A~~~f~~~~~-~d~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~--~~~g~~~~a~~ 622 (868)
+...|...+..... .+...+..+...+.. .+..+.|+..+++....|..+.. ...+..... ........+..
T Consensus 53 d~~~a~~~~~~a~~~~~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~-~~l~~~~~~~~~~~~~~~~a~~ 131 (265)
T d1ouva_ 53 NLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGC-ASLGGIYHDGKVVTRDFKKAVE 131 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHH-HHHHHHHHHCSSSCCCHHHHHH
T ss_pred hHHHHHHhhcccccccccchhhccccccccccccchhhHHHHHHHhhhhhhhhhhHH-HhhcccccCCCcccchhHHHHH
Confidence 44445554444332 233344444443332 34567777777777765432221 111222221 22344556666
Q ss_pred HHHHhhhhcCCCCChhHHHHHHHhhhh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHH
Q 047992 623 VFCSITECYQIIPMIEHYSAMIDLYGR----SGKLEEAMEFIEDMPIEPDSSIWEALLTACRI----HGNIDLAVLAIER 694 (868)
Q Consensus 623 ~~~~m~~~~~~~p~~~~y~~lvd~l~r----~g~~~eA~~~i~~~~~~p~~~~w~~ll~a~~~----~~~~~~a~~~~~~ 694 (868)
.+..... ..+...+..+...+.. ....+.+..+++...-..+...+..|...+.. .+|++.|...+++
T Consensus 132 ~~~~~~~----~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~ 207 (265)
T d1ouva_ 132 YFTKACD----LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSK 207 (265)
T ss_dssp HHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHH
T ss_pred Hhhhhhc----ccccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccchhhhhhhHhh
Confidence 6665443 2334455556555553 45667777777766333456666556555543 5799999999999
Q ss_pred HhccCCCCchhHHHHHHHHhh----cCCChhHHHHHHHHHhcCC
Q 047992 695 LFDLEPGDVLIQRLILQIYAI----CGKPEDALKVRKLERENTR 734 (868)
Q Consensus 695 ~~~l~p~~~~~~~~l~~~y~~----~g~~~~a~~~~~~m~~~~~ 734 (868)
+.+.+ ++.++..|+.+|.. ..+.++|.+..+.--+.|-
T Consensus 208 aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 208 ACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred hhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 98885 68899999999986 3478899998877766663
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.52 E-value=0.00012 Score=66.11 Aligned_cols=63 Identities=14% Similarity=-0.040 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHHh
Q 047992 669 SSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLERE 731 (868)
Q Consensus 669 ~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 731 (868)
...|..+..++...|+++.|...++++++++|+++.+|..++.+|...|++++|.+..+...+
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~ 139 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 139 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHH
Confidence 347788888889999999999999999999999999999999999999999999998776654
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.48 E-value=0.00016 Score=59.96 Aligned_cols=88 Identities=13% Similarity=-0.001 Sum_probs=47.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCC-ChhHHHHHHHhh
Q 047992 570 NSLICGYVLHGFWHAALDLFDQMKSFGLKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIP-MIEHYSAMIDLY 647 (868)
Q Consensus 570 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lvd~l 647 (868)
..+...+.+.|++++|+..|++.+. ..|+. ..+..+..++.+.|++++|...|+...+. .| +.+.+..+..+|
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~a~~~la~~y 94 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHARML---DPKDIAVHAALAVSH 94 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcc--cccccchhhhhhhhhhhhhhhHHHhhccccccccc---ccccccchHHHHHHH
Confidence 3344555666666666666666666 45543 44555555555566666666666555442 22 233444555555
Q ss_pred hhcCChHHHHHHHHh
Q 047992 648 GRSGKLEEAMEFIED 662 (868)
Q Consensus 648 ~r~g~~~eA~~~i~~ 662 (868)
...|++++|.+.+++
T Consensus 95 ~~~g~~~~A~~~l~~ 109 (112)
T d1hxia_ 95 TNEHNANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHH
Confidence 555555555555543
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.48 E-value=0.0003 Score=62.10 Aligned_cols=62 Identities=13% Similarity=-0.005 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHHh
Q 047992 670 SIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLERE 731 (868)
Q Consensus 670 ~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 731 (868)
.++..+..++...|+++.|...++++++++|+++.+|..++.+|...|+|++|....+...+
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~ 129 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 129 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH
Confidence 36677888889999999999999999999999999999999999999999999997765543
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.47 E-value=0.00024 Score=64.42 Aligned_cols=111 Identities=12% Similarity=0.043 Sum_probs=81.0
Q ss_pred HHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 047992 607 IILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDMPIEPDSSIWEALLTACRIHGNID 686 (868)
Q Consensus 607 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~~~~p~~~~w~~ll~a~~~~~~~~ 686 (868)
........|+.++|.+.|.....-+.-.+-.. +.......+...-++. -....|..+..++...|+++
T Consensus 17 ~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~--------~~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~g~~~ 84 (179)
T d2ff4a2 17 AGVHAAAAGRFEQASRHLSAALREWRGPVLDD--------LRDFQFVEPFATALVE----DKVLAHTAKAEAEIACGRAS 84 (179)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGG--------GTTSTTHHHHHHHHHH----HHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCccccccc--------CcchHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCch
Confidence 34567788999999999998877543322111 0111111111111111 11347888999999999999
Q ss_pred HHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHH
Q 047992 687 LAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLE 729 (868)
Q Consensus 687 ~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 729 (868)
.|...++++++++|.+...|..|+.+|...|++++|.++++.+
T Consensus 85 ~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~ 127 (179)
T d2ff4a2 85 AVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV 127 (179)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999987665
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.46 E-value=0.00023 Score=56.85 Aligned_cols=74 Identities=16% Similarity=0.156 Sum_probs=56.9
Q ss_pred HHHHHHhhhhcCChHHHHHHHHhC----C----CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHH
Q 047992 640 YSAMIDLYGRSGKLEEAMEFIEDM----P----IEPD-SSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLIL 710 (868)
Q Consensus 640 y~~lvd~l~r~g~~~eA~~~i~~~----~----~~p~-~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~ 710 (868)
+--+...+.+.|++++|.+.+++. | ..++ ..++..|..++...|+++.|...++++++++|+++.++..|.
T Consensus 8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~ 87 (95)
T d1tjca_ 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 334566667777777777766654 1 1233 458889999999999999999999999999999999888876
Q ss_pred HHH
Q 047992 711 QIY 713 (868)
Q Consensus 711 ~~y 713 (868)
.+.
T Consensus 88 ~~~ 90 (95)
T d1tjca_ 88 YFE 90 (95)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.45 E-value=7.4e-06 Score=89.00 Aligned_cols=132 Identities=9% Similarity=-0.004 Sum_probs=68.1
Q ss_pred CChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHH
Q 047992 580 GFWHAALDLFDQMKSFGLKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAME 658 (868)
Q Consensus 580 g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~ 658 (868)
|.++.|+..+++... +.|+. ..+..+...+...|+.++|...+...... .| ...+.++.+++...|++++|..
T Consensus 100 ~~Y~~ai~~l~~~~~--l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~~-~~~~~~LG~l~~~~~~~~~A~~ 173 (497)
T d1ya0a1 100 GFYTQLLQELCTVFN--VDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY---IC-QHCLVHLGDIARYRNQTSQAES 173 (497)
T ss_dssp HHHHHHHHHHTC---------------------------------CCHHHHH---HH-HHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHC--CChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC---CH-HHHHHHHHHHHHHcccHHHHHH
Confidence 444555554444433 44543 44555556666777777777666554331 11 2356677777777888888888
Q ss_pred HHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcC
Q 047992 659 FIEDM-PIEPDS-SIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICG 717 (868)
Q Consensus 659 ~i~~~-~~~p~~-~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g 717 (868)
.+++. ...|+. ..|+.|...+...|+...|...+.+++.++|..+.++..|..+|....
T Consensus 174 ~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~ 234 (497)
T d1ya0a1 174 YYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKAL 234 (497)
T ss_dssp HHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhh
Confidence 87776 445544 377777777777788888888888888888878888777777765443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.40 E-value=5.9e-05 Score=81.66 Aligned_cols=172 Identities=9% Similarity=-0.113 Sum_probs=98.7
Q ss_pred HHhcCCHHHHHHHHhcCC---CCCceecHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHH
Q 047992 545 YAKSGNIVYSRTIFDGMS---SKDIITWNSLICGYVLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGK 621 (868)
Q Consensus 545 y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 621 (868)
+...|.++.|...+.... .++...|+.+...+...|+.++|+..+++... ..| ..++..+...+...|++++|.
T Consensus 96 ~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~~-~~~~~~LG~l~~~~~~~~~A~ 172 (497)
T d1ya0a1 96 EAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCS--YIC-QHCLVHLGDIARYRNQTSQAE 172 (497)
T ss_dssp HHHHHHHHHHHHHHTC-------------------------------CCHHHH--HHH-HHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhC--CCH-HHHHHHHHHHHHHcccHHHHH
Confidence 344566677776666443 45667788888888899999999988887765 223 256778888999999999999
Q ss_pred HHHHHhhhhcCCCCC-hhHHHHHHHhhhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc
Q 047992 622 KVFCSITECYQIIPM-IEHYSAMIDLYGRSGKLEEAMEFIEDM--PIEPDSSIWEALLTACRIHGNIDLAVLAIERLFDL 698 (868)
Q Consensus 622 ~~~~~m~~~~~~~p~-~~~y~~lvd~l~r~g~~~eA~~~i~~~--~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l 698 (868)
.+|+...+ +.|+ ...|.-+..++...|+..+|...+.+. -.+|-+.++.+|...+....+...+ .+.
T Consensus 173 ~~y~~A~~---l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~~~~~~-------~~~ 242 (497)
T d1ya0a1 173 SYYRHAAQ---LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDE-------VKT 242 (497)
T ss_dssp HHHHHHHH---HCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHTTSCCC-------CCS
T ss_pred HHHHHHHH---HCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhhhh-------hcc
Confidence 99999887 3454 357999999999999999999999987 3356677888888776543321100 011
Q ss_pred CC---CCchhHHHHHHHHhhcCCChhHHHHHHHH
Q 047992 699 EP---GDVLIQRLILQIYAICGKPEDALKVRKLE 729 (868)
Q Consensus 699 ~p---~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 729 (868)
.+ .-...++.+..++...+.+++..++.+.+
T Consensus 243 ~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~~~~ 276 (497)
T d1ya0a1 243 KWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREKL 276 (497)
T ss_dssp SCCHHHHHHHHHHHHHHHHHTCCGGGHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHhCCchhhHHHHHHHH
Confidence 11 11234566666777778888777765443
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.37 E-value=0.00039 Score=62.46 Aligned_cols=61 Identities=11% Similarity=-0.085 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHHh
Q 047992 671 IWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLERE 731 (868)
Q Consensus 671 ~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 731 (868)
++..+..++...|+++.|...++++++++|++..+|..++.+|...|++++|.+..+...+
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~ 126 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 126 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4556667778999999999999999999999999999999999999999999998887654
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.36 E-value=0.00042 Score=58.97 Aligned_cols=91 Identities=15% Similarity=0.116 Sum_probs=49.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCC-----hhHHHHHH
Q 047992 571 SLICGYVLHGFWHAALDLFDQMKSFGLKPN-RGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPM-----IEHYSAMI 644 (868)
Q Consensus 571 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~y~~lv 644 (868)
.+...|.+.|++++|++.|++.++ +.|+ ...+..+..++.+.|++++|+..++.+.+...-.|. ...|..+.
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKE--LDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 344555666666666666666666 3443 345555555666666666666666655442111111 12344455
Q ss_pred HhhhhcCChHHHHHHHHhC
Q 047992 645 DLYGRSGKLEEAMEFIEDM 663 (868)
Q Consensus 645 d~l~r~g~~~eA~~~i~~~ 663 (868)
+.+...+++++|.+.+++.
T Consensus 87 ~~~~~~~~~~~A~~~~~ka 105 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKS 105 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHH
Confidence 5555556666666665543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.36 E-value=3e-05 Score=68.02 Aligned_cols=84 Identities=13% Similarity=-0.012 Sum_probs=63.0
Q ss_pred hhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHh----------cCCHHHHHHHHHHHhccCCCCchhHHHHHHHHh
Q 047992 647 YGRSGKLEEAMEFIEDM-PIEPD-SSIWEALLTACRI----------HGNIDLAVLAIERLFDLEPGDVLIQRLILQIYA 714 (868)
Q Consensus 647 l~r~g~~~eA~~~i~~~-~~~p~-~~~w~~ll~a~~~----------~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 714 (868)
|-|.+.+++|.+.+++. ...|+ +.+|..+..++.. .+.++.|...++++++++|+++.+|..|+++|.
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~ 86 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 86 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHH
Confidence 45667788888888877 44454 4466666666653 355689999999999999999999999999999
Q ss_pred hcCC-----------ChhHHHHHHHHH
Q 047992 715 ICGK-----------PEDALKVRKLER 730 (868)
Q Consensus 715 ~~g~-----------~~~a~~~~~~m~ 730 (868)
..|+ |++|.+..+...
T Consensus 87 ~~g~~~~~~~~~~~~~~~A~~~~~kal 113 (145)
T d1zu2a1 87 SFAFLTPDETEAKHNFDLATQFFQQAV 113 (145)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HcccchhhHHHHHHhHHHhhhhhhccc
Confidence 8775 466666555443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.31 E-value=0.012 Score=56.81 Aligned_cols=94 Identities=13% Similarity=0.066 Sum_probs=47.3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCccChhhHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCeeeHHHH
Q 047992 224 VAWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTFNILIRSYNQ----LGQCDVAMEMVKRMESLGITPDVFTWTCM 299 (868)
Q Consensus 224 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 299 (868)
..+..+-..+.+.+++++|++.|++..+.| +...+..|-.+|.. ..+...|...+......+ +......+
T Consensus 3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~l 76 (265)
T d1ouva_ 3 KELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL 76 (265)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhcc
Confidence 344445555556666666666666666544 33444445555544 345556666665555443 22333333
Q ss_pred HHHHHh----cCChhHHHHHHHHHHhCC
Q 047992 300 ISGFAQ----NGRTSQALDLFKEMSFVG 323 (868)
Q Consensus 300 i~~~~~----~g~~~~A~~l~~~m~~~g 323 (868)
...+.. ..+.+.|...++.....|
T Consensus 77 ~~~~~~~~~~~~~~~~a~~~~~~a~~~g 104 (265)
T d1ouva_ 77 GNLYYSGQGVSQNTNKALQYYSKACDLK 104 (265)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred ccccccccccchhhHHHHHHHhhhhhhh
Confidence 333322 234555555555554443
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.09 E-value=0.00064 Score=60.14 Aligned_cols=85 Identities=13% Similarity=-0.021 Sum_probs=59.8
Q ss_pred hhhhcCChHHHHHHHHhC----CCCCC----------HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC---------
Q 047992 646 LYGRSGKLEEAMEFIEDM----PIEPD----------SSIWEALLTACRIHGNIDLAVLAIERLFDLEPGD--------- 702 (868)
Q Consensus 646 ~l~r~g~~~eA~~~i~~~----~~~p~----------~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~--------- 702 (868)
.+.+.|++++|++.+++. |.-|+ ...|..+..++...|+++.|...+++++++.|+.
T Consensus 18 ~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~ 97 (156)
T d2hr2a1 18 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGK 97 (156)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccc
Confidence 344455566555555544 22221 3467788888888899999999998888765432
Q ss_pred --chhHHHHHHHHhhcCCChhHHHHHHHHH
Q 047992 703 --VLIQRLILQIYAICGKPEDALKVRKLER 730 (868)
Q Consensus 703 --~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 730 (868)
..+|..++.+|...|++++|.+..+...
T Consensus 98 ~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al 127 (156)
T d2hr2a1 98 LWISAVYSRALALDGLGRGAEAMPEFKKVV 127 (156)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 2357789999999999999999776654
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.94 E-value=0.00062 Score=65.91 Aligned_cols=124 Identities=10% Similarity=0.043 Sum_probs=71.9
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCCh-hHHHHHHHhhhhcCChHH
Q 047992 578 LHGFWHAALDLFDQMKSFGLKPNR-GTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMI-EHYSAMIDLYGRSGKLEE 655 (868)
Q Consensus 578 ~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~y~~lvd~l~r~g~~~e 655 (868)
..|+.++|++.+++.++ ..|+. ..+..+...+...|++++|...|+...+ +.|+. ..+..+..++...+..++
T Consensus 8 ~~G~l~eAl~~l~~al~--~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~---l~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp TTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHhccccHH
Confidence 45667777777777766 45544 5555666666666777777766666654 23332 233333444444444444
Q ss_pred HHHHHHhC--CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhH
Q 047992 656 AMEFIEDM--PIEPDSS-IWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQ 706 (868)
Q Consensus 656 A~~~i~~~--~~~p~~~-~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~ 706 (868)
+..-.... ..+|+.. .+......+...|+.+.|...++++.++.|+.+..+
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~ 136 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLA 136 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEE
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCccc
Confidence 43332222 2233322 333344556778889999988888888888876553
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.86 E-value=0.0036 Score=56.33 Aligned_cols=71 Identities=14% Similarity=0.233 Sum_probs=57.0
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHh-----CCccCCccc
Q 047992 259 VTFNILIRSYNQLGQCDVAMEMVKRMESLGITPDVFTWTCMISGFAQNGRTSQALDLFKEMSF-----VGVMPNGVT 330 (868)
Q Consensus 259 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~pd~~t 330 (868)
..+..+...+.+.|++++|+..++.+.+..+. +...|..++.+|.+.|+.++|++.|+++.. .|+.|...+
T Consensus 68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~-~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 68 LAHTAKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 45667788888889999999999888887665 788899999999999999999998888743 477776544
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.70 E-value=0.0037 Score=54.90 Aligned_cols=66 Identities=11% Similarity=0.038 Sum_probs=43.3
Q ss_pred HHHHHHhhhhcCChHHHHHHHHhC--------CCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchh
Q 047992 640 YSAMIDLYGRSGKLEEAMEFIEDM--------PIEPDS-----SIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLI 705 (868)
Q Consensus 640 y~~lvd~l~r~g~~~eA~~~i~~~--------~~~p~~-----~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~ 705 (868)
|.-+..+|...|++++|.+.+++. ...++. .++..+..++...|+++.|...+++++++.|+..+.
T Consensus 58 ~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~~ 136 (156)
T d2hr2a1 58 HAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 136 (156)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhch
Confidence 344455555555555555554443 122221 256677888999999999999999999998866543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.65 E-value=0.00042 Score=67.17 Aligned_cols=120 Identities=11% Similarity=-0.005 Sum_probs=88.9
Q ss_pred hccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHH
Q 047992 612 SLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEAMEFIEDM-PIEPDSS-IWEALLTACRIHGNIDLAV 689 (868)
Q Consensus 612 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA~~~i~~~-~~~p~~~-~w~~ll~a~~~~~~~~~a~ 689 (868)
...|++++|+..++...+. -+-+...+..+..+|.+.|++++|.+.++.. ...|+.. .+..+....+..+..+.+.
T Consensus 7 L~~G~l~eAl~~l~~al~~--~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~ 84 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFA 84 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHH
Confidence 4569999999999998872 3345688999999999999999999999988 5666644 6666666655444444333
Q ss_pred HHHHH-HhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHHhcC
Q 047992 690 LAIER-LFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLERENT 733 (868)
Q Consensus 690 ~~~~~-~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 733 (868)
....+ .+..+|++...+...++++...|++++|.+.++...+..
T Consensus 85 ~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~ 129 (264)
T d1zbpa1 85 QGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR 129 (264)
T ss_dssp TSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 32222 223456666777788999999999999999988876643
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.31 E-value=0.015 Score=45.68 Aligned_cols=61 Identities=15% Similarity=-0.033 Sum_probs=51.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCCC-------chhHHHHHHHHhhcCCChhHHHHHHHHHhc
Q 047992 672 WEALLTACRIHGNIDLAVLAIERLFDLEPGD-------VLIQRLILQIYAICGKPEDALKVRKLEREN 732 (868)
Q Consensus 672 w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~-------~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 732 (868)
+-.++..+...|+++.|...+++++++.|.+ +.+|..|+++|.+.|++++|.+..+...+.
T Consensus 8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 4467788899999999999999999987765 356888999999999999999987776543
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.56 E-value=0.26 Score=39.87 Aligned_cols=75 Identities=15% Similarity=0.104 Sum_probs=48.2
Q ss_pred ChhHHHHHHHhhhhcC---ChHHHHHHHHhC-CCCC-CH-HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHH
Q 047992 636 MIEHYSAMIDLYGRSG---KLEEAMEFIEDM-PIEP-DS-SIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLI 709 (868)
Q Consensus 636 ~~~~y~~lvd~l~r~g---~~~eA~~~i~~~-~~~p-~~-~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l 709 (868)
++++---...+|.++. ++++|+.++++. ...| +. ..|-.|.-+|...|+++.|++.++++++++|+|..+..+.
T Consensus 34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~ 113 (124)
T d2pqrb1 34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 113 (124)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHH
Confidence 3333333344444433 334555555544 1223 32 3667788889999999999999999999999987665554
Q ss_pred H
Q 047992 710 L 710 (868)
Q Consensus 710 ~ 710 (868)
.
T Consensus 114 ~ 114 (124)
T d2pqrb1 114 S 114 (124)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=90.09 E-value=3.6 Score=32.61 Aligned_cols=140 Identities=11% Similarity=0.060 Sum_probs=83.8
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHH
Q 047992 577 VLHGFWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEA 656 (868)
Q Consensus 577 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA 656 (868)
...|..++..++..+.... .+..-++-++.-....-+-+--.+.++++-+-+.+.|-.. .-.+|..+.+.+...|
T Consensus 13 ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C~N-lk~vv~C~~~~n~~se- 87 (161)
T d1wy6a1 13 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQN-LKSVVECGVINNTLNE- 87 (161)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSC-THHHHHHHHHTTCCCH-
T ss_pred HHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCchhhhc-HHHHHHHHHHhcchHH-
Confidence 4467777777777777652 1222233233222233334444555555555555554321 1223333444333322
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhhcCCChhHHHHHHHHHhcCCC
Q 047992 657 MEFIEDMPIEPDSSIWEALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAICGKPEDALKVRKLERENTRR 735 (868)
Q Consensus 657 ~~~i~~~~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 735 (868)
...-.|.....+|.-+.-..++..+++-+.-+|...+-+++.|-+.|.-.++-++.+..=++|++
T Consensus 88 --------------~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 88 --------------HVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp --------------HHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred --------------HHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 23335666777888888888888888877777888888889999999888888887777777775
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=88.73 E-value=13 Score=37.29 Aligned_cols=125 Identities=9% Similarity=-0.013 Sum_probs=66.7
Q ss_pred CChHHHHHHHHHHHHCC-CCCCHHHH-HH-HHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhhcCChHHH
Q 047992 580 GFWHAALDLFDQMKSFG-LKPNRGTF-LS-IILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGRSGKLEEA 656 (868)
Q Consensus 580 g~~~~A~~l~~~m~~~g-~~p~~~t~-~~-ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r~g~~~eA 656 (868)
.+.+.|..++....... ..++.... .. +.......+..+.+..++...... + .+.....-.+....+.++...+
T Consensus 228 ~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~-~--~~~~~~~w~~~~al~~~~~~~~ 304 (450)
T d1qsaa1 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR-S--QSTSLIERRVRMALGTGDRRGL 304 (450)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT-C--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred cChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccc-c--cchHHHHHHHHHHHHcCChHHH
Confidence 45667777776665432 22222111 11 112233445566676666655442 1 2233233334444566788888
Q ss_pred HHHHHhCCCCCCH-HHH-HHHHHHHHhcCCHHHHHHHHHHHhccCCCCchhHHHHHH
Q 047992 657 MEFIEDMPIEPDS-SIW-EALLTACRIHGNIDLAVLAIERLFDLEPGDVLIQRLILQ 711 (868)
Q Consensus 657 ~~~i~~~~~~p~~-~~w-~~ll~a~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 711 (868)
...++.|+..|.. .-| --+..+....|+.+.|...++.+-. .| +.|-.|+.
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~-~~---~fYG~LAa 357 (450)
T d1qsaa1 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ-QR---GFYPMVAA 357 (450)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-SC---SHHHHHHH
T ss_pred HHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc-CC---ChHHHHHH
Confidence 8888887544322 222 2244556677888888888777764 22 36666653
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=87.59 E-value=1.9 Score=35.32 Aligned_cols=83 Identities=7% Similarity=-0.102 Sum_probs=53.4
Q ss_pred cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhccCCCCchhHHHHHHHHhh----cCCChh
Q 047992 650 SGKLEEAMEFIEDMPIEPDSSIWEALLTACRI----HGNIDLAVLAIERLFDLEPGDVLIQRLILQIYAI----CGKPED 721 (868)
Q Consensus 650 ~g~~~eA~~~i~~~~~~p~~~~w~~ll~a~~~----~~~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~----~g~~~~ 721 (868)
..+.++|.+++++.--.-++.....|...+.. ..|.+.|.+.++++.+.. ++.+...|+.+|.. ..+.++
T Consensus 36 ~~~~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~~ 113 (133)
T d1klxa_ 36 QINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQ 113 (133)
T ss_dssp TSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred ccCHHHHHHHHhhhhcccchhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC--cchHHHHHHHHHHcCCccCCCHHH
Confidence 34667777777766222334444444444432 467888888888887764 56778888888876 346677
Q ss_pred HHHHHHHHHhcCC
Q 047992 722 ALKVRKLERENTR 734 (868)
Q Consensus 722 a~~~~~~m~~~~~ 734 (868)
|.+..+.--+.|.
T Consensus 114 A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 114 AVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCC
Confidence 7777776666553
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=87.34 E-value=5.7 Score=31.44 Aligned_cols=67 Identities=9% Similarity=-0.051 Sum_probs=41.7
Q ss_pred CeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCccCCcccHHHHHHHHhchhhHHHHHHHHHHHHHhCC
Q 047992 292 DVFTWTCMISGFAQNGRTSQALDLFKEMSFVGVMPNGVTITSAISACTDLKALAMGMEIHSLAVKMGF 359 (868)
Q Consensus 292 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~ 359 (868)
+....+..++.+.++|.-++-.++++.+.+ +-+|++.....+..||.+.|+..++.+++.++-+.|.
T Consensus 85 ~se~vdlALd~lv~~~kkd~Ld~i~~~l~k-n~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 85 LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 344455556666666776666666666553 4456666666666777777777777666666666653
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=84.15 E-value=23 Score=35.44 Aligned_cols=226 Identities=8% Similarity=-0.058 Sum_probs=117.9
Q ss_pred HHHHhCCChhHHHHHHHHHhhcCCCCCcccHHHHHHHH--hccCChHHHHHHHHHhhhcCCCChhhhhHHHHHHHhcCCh
Q 047992 30 DFLCGNGRLNEAITVLDSIATQGAKVRRNTYINLLQAC--IDSNSIHLARKLHAFLNLVTEIDVFVKTKLLSVYAKCGCL 107 (868)
Q Consensus 30 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~--~~~~~~~~a~~i~~~~~~~~~~~~~~~~~li~~~~~~g~~ 107 (868)
....+.|+..++..+...+... | -..|...-..- ....+......+...- .+.+....+....+..+++.+++
T Consensus 14 ~~a~~~~~~~~~~~~~~~L~dy---p-L~pYl~~~~l~~~~~~~~~~~i~~Fl~~~-p~~P~~~~lr~~~l~~L~~~~~w 88 (450)
T d1qsaa1 14 KQAWDNRQMDVVEQMMPGLKDY---P-LYPYLEYRQITDDLMNQPAVTVTNFVRAN-PTLPPARTLQSRFVNELARREDW 88 (450)
T ss_dssp HHHHHTTCHHHHHHHSGGGTTS---T-THHHHHHHHHHHTGGGCCHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHCCCHHHHHHHHhhhcCC---C-CHHHHHHHHHHhccccCCHHHHHHHHHHC-CCChhHHHHHHHHHHHHHhccCH
Confidence 3456778888877776666321 1 22233322221 1223343333322221 11111223344456677888888
Q ss_pred hHHHHHHhhcCCCCceeHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHhhCCCChHHHHHHHHHHHHhC
Q 047992 108 DDAREVFEDMRERNLYTWSAMIGAYSRDQRWREVVELFFLMVQDGLFPDDFLFPKILQACGNCGDFEAGKLMHSLVIKLG 187 (868)
Q Consensus 108 ~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 187 (868)
......|...| .+...-.....+....|+..+|...+...-..|... . +....++....+.|
T Consensus 89 ~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~-p----------------~~c~~l~~~~~~~~ 150 (450)
T d1qsaa1 89 RGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQ-P----------------NACDKLFSVWRASG 150 (450)
T ss_dssp HHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCC-C----------------THHHHHHHHHHHTT
T ss_pred HHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-c----------------hHHHHHHHHHHhcC
Confidence 77666554322 233334456677788999999999888877655321 1 12233444444444
Q ss_pred CCCCcchHHHHHHHHHHcCChHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCccChhhHHHHHHH
Q 047992 188 MSCVRRVRNSVLAVYVKCGKLIWARRFFESMDEKDGVAWNSMISGYFQIGENDEAHRLFDKMCREEIKLGVVTFNILIRS 267 (868)
Q Consensus 188 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~ 267 (868)
. .+....-.-+......|+...|..+...++..........+...... ..+...... . .++......+..+
T Consensus 151 ~-lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~p---~~~~~~~~~---~--~~~~~~~~~~~~~ 221 (450)
T d1qsaa1 151 K-QDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNP---NTVLTFART---T--GATDFTRQMAAVA 221 (450)
T ss_dssp C-SCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCG---GGHHHHHHH---S--CCCHHHHHHHHHH
T ss_pred C-CCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhCh---HhHHHHHhc---C--CCChhhhHHHHHH
Confidence 3 33444445666777789999999999888766555555555554332 222222211 1 1222222223333
Q ss_pred HHh--cCChHHHHHHHHHHHhc
Q 047992 268 YNQ--LGQCDVAMEMVKRMESL 287 (868)
Q Consensus 268 ~~~--~g~~~~A~~~~~~m~~~ 287 (868)
+.+ ..+.+.|..++......
T Consensus 222 l~rla~~d~~~a~~~l~~~~~~ 243 (450)
T d1qsaa1 222 FASVARQDAENARLMIPSLAQA 243 (450)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHhccChhHHHHHHHhhhhc
Confidence 332 24566777777666554
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=83.76 E-value=6.8 Score=29.37 Aligned_cols=63 Identities=24% Similarity=0.293 Sum_probs=47.7
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc-cCCCCchhHHHHHHHHhhcCCChhHHHHHHHHHhcCCC
Q 047992 660 IEDMPIEPDSSIWEALLTACRIHGNIDLAVLAIERLFD-LEPGDVLIQRLILQIYAICGKPEDALKVRKLERENTRR 735 (868)
Q Consensus 660 i~~~~~~p~~~~w~~ll~a~~~~~~~~~a~~~~~~~~~-l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 735 (868)
+-.+..-|++.+..+-|.|||+-+|+..|.+.+|-+-. .++ +...|-.+. .+++-.+.+.|+.
T Consensus 32 l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~~-~k~~y~yil------------qelkptl~ELGI~ 95 (105)
T d1v54e_ 32 LVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP-HKEIYPYVI------------QELRPTLNELGIS 95 (105)
T ss_dssp HTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT-CTTHHHHHH------------HHHHHHHHHHTCC
T ss_pred HhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC-cHHHHHHHH------------HHHhhHHHHhCCC
Confidence 33446789999999999999999999999999998764 334 344554433 3577778888875
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=82.91 E-value=6.9 Score=31.54 Aligned_cols=112 Identities=13% Similarity=-0.022 Sum_probs=63.8
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCChHHHHHHHHHhhhhcCCCCChhHHHHHHHhhhh----cCChHHH
Q 047992 581 FWHAALDLFDQMKSFGLKPNRGTFLSIILAHSLAGMVDLGKKVFCSITECYQIIPMIEHYSAMIDLYGR----SGKLEEA 656 (868)
Q Consensus 581 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lvd~l~r----~g~~~eA 656 (868)
+.++|+++|++..+.|- |.. ...+ +.....+.++|..+|+...+ .| +......|..+|.. ..+.++|
T Consensus 8 d~~~A~~~~~kaa~~g~-~~a--~~~l--~~~~~~~~~~a~~~~~~aa~-~g---~~~a~~~Lg~~y~~g~~~~~d~~~A 78 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNE-MFG--CLSL--VSNSQINKQKLFQYLSKACE-LN---SGNGCRFLGDFYENGKYVKKDLRKA 78 (133)
T ss_dssp HHHHHHHHHHHHHHTTC-TTH--HHHH--HTCTTSCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CHHHHHHHHHHHHHCCC-hhh--hhhh--ccccccCHHHHHHHHhhhhc-cc---chhhhhhHHHhhhhccccchhhHHH
Confidence 45677777777766552 221 2222 22344566777777776654 23 22333344444432 3467888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhccCCC
Q 047992 657 MEFIEDMPIEPDSSIWEALLTACRI----HGNIDLAVLAIERLFDLEPG 701 (868)
Q Consensus 657 ~~~i~~~~~~p~~~~w~~ll~a~~~----~~~~~~a~~~~~~~~~l~p~ 701 (868)
.+++++.--.-++.....|...+.. .+|.+.|.+.++++.++...
T Consensus 79 ~~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~~ 127 (133)
T d1klxa_ 79 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 127 (133)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCCH
Confidence 8888887322333334444444443 46899999999998887643
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.59 E-value=1.3 Score=35.47 Aligned_cols=65 Identities=8% Similarity=-0.146 Sum_probs=51.0
Q ss_pred CCHHHHHHHHHHHHhc---CCHHHHHHHHHHHhccCCCCc-hhHHHHHHHHhhcCCChhHHHHHHHHHh
Q 047992 667 PDSSIWEALLTACRIH---GNIDLAVLAIERLFDLEPGDV-LIQRLILQIYAICGKPEDALKVRKLERE 731 (868)
Q Consensus 667 p~~~~w~~ll~a~~~~---~~~~~a~~~~~~~~~l~p~~~-~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 731 (868)
|..-+.-.+..+...+ .+.+.|...++.+++.+|.+. ..+..|+..|+..|++++|.+..+...+
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 4444555555555544 567899999999999999775 6778999999999999999998776654
|