Citrus Sinensis ID: 047994

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-
Protein Sequence
MVFASNPLSLNVPDPAFESWLRDSSYLEILDTATTTSATAVTTASTKETATTPSWTREFIGALRSYSFPSSPHTLKLRVHENVKRYARNYASLFILFFACS
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHHHHccccEEEEccccccccHHHcccccccccccccccccEEcccccccccccHHHHHHHHHHHHHHHHHcHHHEEEEEEccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccHHHHHHHHccccHHHHcccccccHHccccccHHccccccccHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mvfasnplslnvpdpafeswlrdssYLEILDtatttsatavttastketattpswtREFIGALrsysfpssphtlklRVHENVKRYARNYASLFILFFACS
Flexible Loop (DISEMBL)
mvfasnplslnvpdpaFESWLRDSSYLEILDTAtttsatavttastketattpswtREFIGALRSysfpssphtlKLRVHENVKRYARNYASLFILFFACS
Low Complexity Region (SEG)
MVFASNPLSLNVPDPAFESWLRDSSYLEILDtatttsatavttastketattPSWTREFIGALRSYSFPSSPHTLKLRVHENVKRYARNYASLFILFFACS
Disordered region (IsUnstruct)
***************AFESWLRDSSYLEILDTATTTSATAVTT*******TTPSWTREFIGALRSYSFPSSPHTLKLRVHENVKRYARNYASLFILFFAC*
Disordered Region (DISOPRED)
*****NPLSLNVPDPAFESWLRDSSYLEILDTATTTSATAVTTAS*KETATTPSWTREFIGALRSYSFPS*******RVHENVKRYARNYASLFILFFACS
Disordered Region (DISEMBL)
MVFASNPLSLNVPDPAFESWLRDSSYLEILDTATTT****************PSWTREFIGALRSYSFPSSPHTLKLRVHENVKRYARNYASLFILFFACS
Disordered Region (DISPRO)
*******LSLNVPDPAFESWLRDSSYLEILDTATTT****************PSWTREFIGALRSYSFPSSPHTLKLRVHENVKRYARNYASLFILFFACS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVFASNPLSLNVPDPAFESWLRDSSYLEILDTATTTSATAVTTASTKETATTPSWTREFIGALRSYSFPSSPHTLKLRVHENVKRYARNYASLFILFFACS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	101	2.2.26 [Sep-21-2011]
Q8LFP1	241	PRA1 family protein H OS=	yes	no	0.990	0.414	0.423	8e-23

>sp|Q8LFP1|PRA1H_ARATH PRA1 family protein H OS=Arabidopsis thaliana GN=PRA1H PE=2 SV=1

 Score =  105 bits (262), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 64/151 (42%), Positives = 77/151 (50%), Gaps = 51/151 (33%)

Query: 1   MVFASNPLSLNVPDPAFESWLRDSSYLEILDTAT-------------------------- 34
           M F+ NPLSL+VPDPAFESWLRDS YLE+LD  T                          
Sbjct: 1   MAFSPNPLSLSVPDPAFESWLRDSGYLELLDHRTSAAAAAASSSASVSSSAAATSAASDD 60

Query: 35  ------------------TTSATAVTTASTKETA------TTPSWTREFIGALRSYSFPS 70
                             T S+       +K +A      TTP WT  FIG   SYSFPS
Sbjct: 61  VVSSITGGFFASLLSRLVTVSSLLTINPFSKLSADDFSGDTTP-WTTGFIGNCDSYSFPS 119

Query: 71  SPHTLKLRVHENVKRYARNYASLFILFFACS 101
           S    ++RVHEN+KR+ARNYA+LFI+FFAC+
Sbjct: 120 SSQQARMRVHENIKRFARNYATLFIVFFACA 150

May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments.
Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	101
255584403	235	conserved hypothetical protein [Ricinus	1.0	0.429	0.458	8e-25
356549695	222	PREDICTED: PRA1 family protein H-like [G	1.0	0.454	0.503	5e-24
449456631	235	PREDICTED: PRA1 family protein H-like is	1.0	0.429	0.457	6e-24
449507067	235	PREDICTED: PRA1 family protein H-like is	1.0	0.429	0.457	8e-24
224128244	232	predicted protein [Populus trichocarpa]	1.0	0.435	0.453	7e-22
224114888	229	predicted protein [Populus trichocarpa]	1.0	0.441	0.456	1e-21
297799228	241	hypothetical protein ARALYDRAFT_492039 [	1.0	0.419	0.413	3e-21
18417012	241	PRA1-like protein H [Arabidopsis thalian	0.990	0.414	0.423	4e-21
4469005	208	hypothetical protein [Arabidopsis thalia	0.990	0.480	0.423	5e-21
302142972	231	unnamed protein product [Vitis vinifera]	1.0	0.437	0.435	1e-20

>gi|255584403|ref|XP_002532934.1| conserved hypothetical protein [Ricinus communis] gi|223527298|gb|EEF29450.1| conserved hypothetical protein [Ricinus communis]

 Score =  117 bits (293), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 66/144 (45%), Positives = 79/144 (54%), Gaps = 43/144 (29%)

Query: 1   MVFASNPLSLNVPDPAFESWLRDSSYLEILD----------------------------- 31
           MVF+SNPLSL+VPDPAFESWLRDS YLE+LD                             
Sbjct: 1   MVFSSNPLSLSVPDPAFESWLRDSGYLELLDHRSSSTAATSTPTTASTSNSTTATAATIT 60

Query: 32  -------------TATTTSATAVTTASTKE-TATTPSWTREFIGALRSYSFPSSPHTLKL 77
                          +  +   ++  +T + +  TPSWTR F G   SYSFPS+    +L
Sbjct: 61  GGFFISLFSHFITLISLFTLNPLSKLTTDDFSGQTPSWTRVFFGDFGSYSFPSNADQARL 120

Query: 78  RVHENVKRYARNYASLFILFFACS 101
           RVHENVKRYARNYASLFILFFAC+
Sbjct: 121 RVHENVKRYARNYASLFILFFACT 144

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549695|ref|XP_003543227.1| PREDICTED: PRA1 family protein H-like [Glycine max]

 Score =  115 bits (287), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 65/129 (50%), Positives = 79/129 (61%), Gaps = 28/129 (21%)

Query: 1   MVFASNPLSLNVPDPAFESWLRDSSYLEILDTATTTSATAVTT----------------- 43
           MVF+SNPLSL+VP+PAFESWLRD+ +LE+LD  T++SA A +                  
Sbjct: 1   MVFSSNPLSLSVPEPAFESWLRDTGFLEVLDHRTSSSAAAASPAPSSAASTLFSRLLTFL 60

Query: 44  -----------ASTKETATTPSWTREFIGALRSYSFPSSPHTLKLRVHENVKRYARNYAS 92
                      A+    A TPSW+R F     SYSFPSSP   +LRV ENVKRYARNYA 
Sbjct: 61  SLFTLNAFAKLAADDFAADTPSWSRSFFAFSDSYSFPSSPSQARLRVQENVKRYARNYAY 120

Query: 93  LFILFFACS 101
           LFI+FFAC+
Sbjct: 121 LFIVFFACT 129

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456631|ref|XP_004146052.1| PREDICTED: PRA1 family protein H-like isoform 1 [Cucumis sativus] gi|449456633|ref|XP_004146053.1| PREDICTED: PRA1 family protein H-like isoform 2 [Cucumis sativus]

 Score =  114 bits (286), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 65/142 (45%), Positives = 77/142 (54%), Gaps = 41/142 (28%)

Query: 1   MVFASNPLSLNVPDPAFESWLRDSSYLEILDTATT----------------TSATAVTTA 44
           M F+SNPLSL+VPD AF+SWLRDS YLEILD  T+                T+A  + T 
Sbjct: 1   MSFSSNPLSLSVPDAAFDSWLRDSGYLEILDQRTSDLHRHSSAAPPARPTPTAAAPLATG 60

Query: 45  -------------------------STKETATTPSWTREFIGALRSYSFPSSPHTLKLRV 79
                                    +   +  TPSWT  F+G   SYSFPSSP   +LRV
Sbjct: 61  FFISLFSRIATLLSIFTLNPFAKLSAADFSGPTPSWTTGFVGFFESYSFPSSPAQARLRV 120

Query: 80  HENVKRYARNYASLFILFFACS 101
           HEN KRYARNYASLF+LFF C+
Sbjct: 121 HENAKRYARNYASLFVLFFVCT 142

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449507067|ref|XP_004162924.1| PREDICTED: PRA1 family protein H-like isoform 1 [Cucumis sativus] gi|449507071|ref|XP_004162925.1| PREDICTED: PRA1 family protein H-like isoform 2 [Cucumis sativus]

 Score =  114 bits (285), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 65/142 (45%), Positives = 77/142 (54%), Gaps = 41/142 (28%)

Query: 1   MVFASNPLSLNVPDPAFESWLRDSSYLEILDTATT----------------TSATAVTTA 44
           M F+SNPLSL+VPD AF+SWLRDS YLEILD  T+                T+A  + T 
Sbjct: 1   MSFSSNPLSLSVPDAAFDSWLRDSGYLEILDQRTSDLHRHSSAAPPARPTPTAAAPLATG 60

Query: 45  -------------------------STKETATTPSWTREFIGALRSYSFPSSPHTLKLRV 79
                                    +   +  TPSWT  F+G   SYSFPSSP   +LRV
Sbjct: 61  FFISLFSRIATLLSIFTLNPFAKLSAADFSGPTPSWTTGFLGFFESYSFPSSPAQARLRV 120

Query: 80  HENVKRYARNYASLFILFFACS 101
           HEN KRYARNYASLF+LFF C+
Sbjct: 121 HENAKRYARNYASLFVLFFVCT 142

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128244|ref|XP_002329116.1| predicted protein [Populus trichocarpa] gi|222869785|gb|EEF06916.1| predicted protein [Populus trichocarpa]

 Score =  107 bits (268), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 64/141 (45%), Positives = 76/141 (53%), Gaps = 40/141 (28%)

Query: 1   MVFASNPLSLNVPDPAFESWLRDSSYLEILDTATTTSATAVTTASTKE------------ 48
           MVF+SNPLSL+VPD  F+SWLRDS YLEILD  +++SA A    ++              
Sbjct: 1   MVFSSNPLSLSVPDTTFDSWLRDSGYLEILDQHSSSSAAAAPATTSTITSTTTTATATGL 60

Query: 49  ----------------------------TATTPSWTREFIGALRSYSFPSSPHTLKLRVH 80
                                       +  TPSWTR F     SYSFPS     +LRV+
Sbjct: 61  FISFFSHILTLLSLFTLNPFSKLTTDDFSGQTPSWTRSFFADCGSYSFPSGSDQARLRVN 120

Query: 81  ENVKRYARNYASLFILFFACS 101
           ENVKRYARNYASLFILFFAC+
Sbjct: 121 ENVKRYARNYASLFILFFACT 141

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114888|ref|XP_002316885.1| predicted protein [Populus trichocarpa] gi|222859950|gb|EEE97497.1| predicted protein [Populus trichocarpa]

 Score =  107 bits (267), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 63/138 (45%), Positives = 73/138 (52%), Gaps = 37/138 (26%)

Query: 1   MVFASNPLSLNVPDPAFESWLRDSSYLEILDT---------------------------- 32
           MVF+SNPLSL+VPDP F++WLRDS YLEILD                             
Sbjct: 1   MVFSSNPLSLSVPDPTFDTWLRDSGYLEILDQHSSAAAAPSTTTTSTTTTTTTATGLFIS 60

Query: 33  ----ATTTSATAVTTASTKET-----ATTPSWTREFIGALRSYSFPSSPHTLKLRVHENV 83
               A T  +       +K T       TPSWTR F    RSYSFPS     +LRV+ENV
Sbjct: 61  FFSHALTLLSLFTLNPFSKLTTDDFSGPTPSWTRSFFADHRSYSFPSGFGQARLRVNENV 120

Query: 84  KRYARNYASLFILFFACS 101
           KRYARNYA LF+LFF C+
Sbjct: 121 KRYARNYAFLFVLFFVCT 138

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297799228|ref|XP_002867498.1| hypothetical protein ARALYDRAFT_492039 [Arabidopsis lyrata subsp. lyrata] gi|297313334|gb|EFH43757.1| hypothetical protein ARALYDRAFT_492039 [Arabidopsis lyrata subsp. lyrata]

 Score =  105 bits (263), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 62/150 (41%), Positives = 75/150 (50%), Gaps = 49/150 (32%)

Query: 1   MVFASNPLSLNVPDPAFESWLRDSSYLEILDTAT-------------------------- 34
           M F+ NPLSL+VPDPAFESWLRDS YLE+LD  T                          
Sbjct: 1   MAFSPNPLSLSVPDPAFESWLRDSGYLELLDHRTSAAAAAASSSASVSSSAAATSAASDD 60

Query: 35  ------------------TTSATAVTTASTKETAT-----TPSWTREFIGALRSYSFPSS 71
                             T S+       +K +A      TP WT  F G   SYSFPSS
Sbjct: 61  VVSSITGGFFASLLSRLVTVSSLLTINPFSKLSADDFSGDTPPWTTGFFGNCDSYSFPSS 120

Query: 72  PHTLKLRVHENVKRYARNYASLFILFFACS 101
               ++RVHEN+KR+ARNYA+LFI+FFAC+
Sbjct: 121 SQQARMRVHENIKRFARNYATLFIVFFACA 150

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18417012|ref|NP_567776.1| PRA1-like protein H [Arabidopsis thaliana] gi|75155917|sp|Q8LFP1.1|PRA1H_ARATH RecName: Full=PRA1 family protein H; Short=AtPRA1.H gi|21536961|gb|AAM61302.1| unknown [Arabidopsis thaliana] gi|92856594|gb|ABE77405.1| At4g27540 [Arabidopsis thaliana] gi|332659955|gb|AEE85355.1| PRA1-like protein H [Arabidopsis thaliana]

 Score =  105 bits (262), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 64/151 (42%), Positives = 77/151 (50%), Gaps = 51/151 (33%)

Query: 1   MVFASNPLSLNVPDPAFESWLRDSSYLEILDTAT-------------------------- 34
           M F+ NPLSL+VPDPAFESWLRDS YLE+LD  T                          
Sbjct: 1   MAFSPNPLSLSVPDPAFESWLRDSGYLELLDHRTSAAAAAASSSASVSSSAAATSAASDD 60

Query: 35  ------------------TTSATAVTTASTKETA------TTPSWTREFIGALRSYSFPS 70
                             T S+       +K +A      TTP WT  FIG   SYSFPS
Sbjct: 61  VVSSITGGFFASLLSRLVTVSSLLTINPFSKLSADDFSGDTTP-WTTGFIGNCDSYSFPS 119

Query: 71  SPHTLKLRVHENVKRYARNYASLFILFFACS 101
           S    ++RVHEN+KR+ARNYA+LFI+FFAC+
Sbjct: 120 SSQQARMRVHENIKRFARNYATLFIVFFACA 150

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4469005|emb|CAB38266.1| hypothetical protein [Arabidopsis thaliana] gi|7269608|emb|CAB81404.1| hypothetical protein [Arabidopsis thaliana]

 Score =  105 bits (261), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 64/151 (42%), Positives = 77/151 (50%), Gaps = 51/151 (33%)

Query: 1   MVFASNPLSLNVPDPAFESWLRDSSYLEILDTAT-------------------------- 34
           M F+ NPLSL+VPDPAFESWLRDS YLE+LD  T                          
Sbjct: 1   MAFSPNPLSLSVPDPAFESWLRDSGYLELLDHRTSAAAAAASSSASVSSSAAATSAASDD 60

Query: 35  ------------------TTSATAVTTASTKETA------TTPSWTREFIGALRSYSFPS 70
                             T S+       +K +A      TTP WT  FIG   SYSFPS
Sbjct: 61  VVSSITGGFFASLLSRLVTVSSLLTINPFSKLSADDFSGDTTP-WTTGFIGNCDSYSFPS 119

Query: 71  SPHTLKLRVHENVKRYARNYASLFILFFACS 101
           S    ++RVHEN+KR+ARNYA+LFI+FFAC+
Sbjct: 120 SSQQARMRVHENIKRFARNYATLFIVFFACA 150

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142972|emb|CBI20267.3| unnamed protein product [Vitis vinifera]

 Score =  103 bits (257), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 61/140 (43%), Positives = 75/140 (53%), Gaps = 39/140 (27%)

Query: 1   MVFASNPLSLNVPDPAFESWLRDSSYLEILDTATT--------------------TSATA 40
           M F+SNPLSL+VPD AFE+WLRD+ YLE++D  T+                     S   
Sbjct: 1   MAFSSNPLSLSVPDAAFETWLRDTGYLEVVDRRTSDLHRLSSGGDSSSTTASIPSNSFFF 60

Query: 41  VTTASTKET-------------------ATTPSWTREFIGALRSYSFPSSPHTLKLRVHE 81
           V+  S   T                     TPSWT  F+G   SY+FPSS    +LRVHE
Sbjct: 61  VSILSHLGTLLSLFTLNPFSKLTSDDFSGPTPSWTLAFVGFCDSYTFPSSSSQARLRVHE 120

Query: 82  NVKRYARNYASLFILFFACS 101
           NVKRYARNYA+LFI+ FAC+
Sbjct: 121 NVKRYARNYATLFIICFACT 140

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	101
TAIR|locus:2137692	241	PRA1.H "AT4G27540" [Arabidopsi	0.465	0.195	0.659	3.1e-26

TAIR|locus:2137692 PRA1.H "AT4G27540" [Arabidopsis thaliana (taxid:3702)]

 Score = 173 (66.0 bits), Expect = 3.1e-26, Sum P(2) = 3.1e-26
 Identities = 31/47 (65%), Positives = 38/47 (80%)

Query:    55 WTREFIGALRSYSFPSSPHTLKLRVHENVKRYARNYASLFILFFACS 101
             WT  FIG   SYSFPSS    ++RVHEN+KR+ARNYA+LFI+FFAC+
Sbjct:   104 WTTGFIGNCDSYSFPSSSQQARMRVHENIKRFARNYATLFIVFFACA 150

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=IDA

GO:0006914 "autophagy" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	101
PF03208	153	PRA1: PRA1 family protein; InterPro: IPR004895 Thi	99.19
KOG3142	187	consensus Prenylated rab acceptor 1 [Intracellular	97.44
COG5130	169	YIP3 Prenylated rab acceptor 1 and related protein	93.2

>PF03208 PRA1: PRA1 family protein; InterPro: IPR004895 This family includes yeast hypothetical proteins and the uncharacterised rat prenylated rab acceptor protein PRA1

Probab=99.19  E-value=1.6e-11  Score=86.39  Aligned_cols=50  Identities=32%  Similarity=0.606  Sum_probs=46.2

Q ss_pred             cCCCCCcchhhhcccccccCCCChhhhhhhhhhhHHHHhhhhHHhHhhhhhc
Q 047994           49 TATTPSWTREFIGALRSYSFPSSPHTLKLRVHENVKRYARNYASLFILFFAC  100 (101)
Q Consensus        49 ~~~t~~WtreF~g~~~SYSfP~s~~qarlRv~eNvkrY~rNYa~l~i~~Fac  100 (101)
                      ..+..|| +||+ ..++||.|++..|++.|+..|+..|..||+.++++++++
T Consensus         5 ~~~~Rpw-~eF~-~~~~fs~P~~~~~~~~Ri~~Nl~~F~~NY~~i~~~~~~~   54 (153)
T PF03208_consen    5 LSPLRPW-REFF-DTSRFSVPSSFSEAKSRIKRNLSYFQTNYLLIFLLLFLI   54 (153)
T ss_pred             cCCCCCH-HHHh-CccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3577899 8999 788999999999999999999999999999999998876

>KOG3142 consensus Prenylated rab acceptor 1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.44  E-value=0.00015  Score=56.04  Aligned_cols=43  Identities=23%  Similarity=0.509  Sum_probs=37.5

Q ss_pred             CCcchhhhcccccccCCCChhhhhhhhhhhHHHHhhhhHHhHhhh
Q 047994           53 PSWTREFIGALRSYSFPSSPHTLKLRVHENVKRYARNYASLFILF   97 (101)
Q Consensus        53 ~~WtreF~g~~~SYSfP~s~~qarlRv~eNvkrY~rNYa~l~i~~   97 (101)
                      .|| +||+.. .+.|.|+|..+|..|+--|+..|--||+.++.++
T Consensus        38 RpW-~ef~d~-~~fs~P~s~s~a~sRi~~Nl~yF~~NY~~iv~~~   80 (187)
T KOG3142|consen   38 RPW-SEFFDR-SAFSRPRSLSDATSRIKRNLSYFRVNYVIIVAIL   80 (187)
T ss_pred             CCH-HHHHcc-cccCCCccHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            459 799954 6789999999999999999999999999877543

>COG5130 YIP3 Prenylated rab acceptor 1 and related proteins [Intracellular trafficking and secretion / Signal transduction mechanisms]

Probab=93.20  E-value=0.11  Score=40.27  Aligned_cols=40  Identities=30%  Similarity=0.515  Sum_probs=33.9

Q ss_pred             chhhhcccccccCCCChhhhhhhhhhhHHHHhhhhHHhHhh
Q 047994           56 TREFIGALRSYSFPSSPHTLKLRVHENVKRYARNYASLFIL   96 (101)
Q Consensus        56 treF~g~~~SYSfP~s~~qarlRv~eNvkrY~rNYa~l~i~   96 (101)
                      +||||.-. --|-|....||+.||--|++|+--||..+..+
T Consensus        32 ~~eFfni~-rIs~PqNf~eaqsRv~~Nl~rFssnYlaiia~   71 (169)
T COG5130          32 TREFFNIG-RISVPQNFNEAQSRVFANLDRFSSNYLAIIAI   71 (169)
T ss_pred             HHHHhccc-cccCCcchHHHHHHHHhhHHHHhhhHHHHHHH
Confidence            48999643 35889999999999999999999999876543

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00