Citrus Sinensis ID: 048115

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90----
Protein Sequence
MGRWMRPEVYPLMAAMTFVASMCVFQLTRNVLLNPDVRINKGRRSMGVLENEEEGEKYAEHGLRRFLRTRPPQVMPAINRFFTQDKDQFQPPKN
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHHHHHEEEEEEcccccccEEEEcccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccEEEcHHHHHccccccHHHHHHHHHHHHHHHHHcccccccHcHHHHccccccccccccc
Coil and Loop (DISEMBL)
mgrwmrpevypLMAAMTFVASMCVFQLTrnvllnpdvrinkgrrsmgvleneeeGEKYAEHGLRRflrtrppqvmpainrfftqdkdqfqppkn
Flexible Loop (DISEMBL)
MGRWMRPEVYPLMAAMTFVASMCVFQLTRnvllnpdvrinkgrrsmgvleneeegekyAEHGLRRFLRTRPPQVMPAINRfftqdkdqfqppkn
Low Complexity Region (SEG)
MGRWMRPEVYPLMAAMTFVASMCVFQLTRNVLLNPDVRINKGRRSMGVLENEEEGEKYAEHGLRRFLRTRPPQVMPAINRFFTQDKDQFQPPKN
Disordered region (IsUnstruct)
****MRPEVYPLMAAMTFVASMCVFQLTRNVLLNPDVRIN******************************************************
Disordered Region (DISOPRED)
*GRWMRPEVYPLMAAMTFVASMCVFQLTRNVLLNPDVRINKGRRSMGVLENEEEGEKYAEHGLRRFLRTRPPQVMPAINR**************
Disordered Region (DISEMBL)
MGRWMRPEVYPLMAAMTFVASMCVFQLTRNVLLNPDVRINKGRRSMGVLENEEEGEKYAEHGLRRFLRTRPPQVMPAINRFFTQDK********
Disordered Region (DISPRO)
**RWMRPEVYPLMAAMTFVASMCVFQLTRNVLLNPDVRINKGRRSMGVLENEEEGEKYAEHGLRRFLRTRPPQVMPAINRFFTQDKD*F*****
Transmembrane Helix (TMHMM)
oooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGRWMRPEVYPLMAAMTFVASMCVFQLTRNVLLNPDVRINKGRRSMGVLENEEEGEKYAEHGLRRFLRTRPPQVMPAINRFFTQDKDQFQPPKN
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	94
356526540	86	PREDICTED: uncharacterized protein LOC10	0.914	1.0	0.825	2e-36
356568817	86	PREDICTED: uncharacterized protein LOC10	0.914	1.0	0.813	8e-36
224077746	86	predicted protein [Populus trichocarpa]	0.914	1.0	0.790	2e-35
224120644	86	predicted protein [Populus trichocarpa]	0.914	1.0	0.744	9e-35
449438971	87	PREDICTED: uncharacterized protein LOC10	0.904	0.977	0.741	2e-34
38194922	128	B12D-like protein [Phaseolus vulgaris]	0.914	0.671	0.707	3e-34
255580348	86	conserved hypothetical protein [Ricinus	0.914	1.0	0.744	1e-33
388511405	86	unknown [Medicago truncatula]	0.914	1.0	0.755	4e-33
388512571	87	unknown [Lotus japonicus]	0.904	0.977	0.755	2e-32
297815286	87	hypothetical protein ARALYDRAFT_323026 [	0.925	1.0	0.701	3e-31

>gi|356526540|ref|XP_003531875.1| PREDICTED: uncharacterized protein LOC100527287 [Glycine max] gi|255631956|gb|ACU16358.1| unknown [Glycine max]

 Score =  155 bits (393), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 71/86 (82%), Positives = 78/86 (90%)

Query: 1  MGRWMRPEVYPLMAAMTFVASMCVFQLTRNVLLNPDVRINKGRRSMGVLENEEEGEKYAE 60
          MGRWM+PEVYPL+AAMTFV  MCVFQLTRNVL NPDVRINK RRSM VLEN EEGEKYAE
Sbjct: 1  MGRWMKPEVYPLLAAMTFVTGMCVFQLTRNVLGNPDVRINKTRRSMAVLENREEGEKYAE 60

Query: 61 HGLRRFLRTRPPQVMPAINRFFTQDK 86
          HGLR+FLRTRPP++MP IN FF++DK
Sbjct: 61 HGLRKFLRTRPPEIMPTINHFFSEDK 86

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568817|ref|XP_003552604.1| PREDICTED: uncharacterized protein LOC100785946 [Glycine max]

 Score =  154 bits (388), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 70/86 (81%), Positives = 80/86 (93%)

Query: 1  MGRWMRPEVYPLMAAMTFVASMCVFQLTRNVLLNPDVRINKGRRSMGVLENEEEGEKYAE 60
          MGRWM+PEVYPL+AAMTFV+SMCVFQLTRN+L NPDVRINK RRSM VL+N EEGEKYAE
Sbjct: 1  MGRWMKPEVYPLLAAMTFVSSMCVFQLTRNMLGNPDVRINKTRRSMPVLDNREEGEKYAE 60

Query: 61 HGLRRFLRTRPPQVMPAINRFFTQDK 86
          HGLR+FLRTRPP++MP IN FF++DK
Sbjct: 61 HGLRKFLRTRPPEIMPTINHFFSEDK 86

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224077746|ref|XP_002305391.1| predicted protein [Populus trichocarpa] gi|222848355|gb|EEE85902.1| predicted protein [Populus trichocarpa]

 Score =  152 bits (385), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 68/86 (79%), Positives = 78/86 (90%)

Query: 1  MGRWMRPEVYPLMAAMTFVASMCVFQLTRNVLLNPDVRINKGRRSMGVLENEEEGEKYAE 60
          MGRWM+PEVYPL+AAMT V S+C+FQLTRNV LNPDVRINK +RSMGVL N EEGE+YAE
Sbjct: 1  MGRWMKPEVYPLLAAMTCVTSLCIFQLTRNVFLNPDVRINKAKRSMGVLGNNEEGERYAE 60

Query: 61 HGLRRFLRTRPPQVMPAINRFFTQDK 86
          HGLRRFLRTRPP++MP IN FFT++K
Sbjct: 61 HGLRRFLRTRPPEIMPTINHFFTENK 86

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120644|ref|XP_002330916.1| predicted protein [Populus trichocarpa] gi|222873110|gb|EEF10241.1| predicted protein [Populus trichocarpa]

 Score =  150 bits (379), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 64/86 (74%), Positives = 78/86 (90%)

Query: 1  MGRWMRPEVYPLMAAMTFVASMCVFQLTRNVLLNPDVRINKGRRSMGVLENEEEGEKYAE 60
          MGRWM+PEVYPL+AAMT V S+C+FQLTRNV +NPDVR+NK  R MGVLEN+EEGE+YAE
Sbjct: 1  MGRWMKPEVYPLLAAMTCVTSLCIFQLTRNVFMNPDVRVNKANRGMGVLENKEEGERYAE 60

Query: 61 HGLRRFLRTRPPQVMPAINRFFTQDK 86
          HGLR+FLRTRPP++MP +N FF++DK
Sbjct: 61 HGLRKFLRTRPPEIMPTVNHFFSEDK 86

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438971|ref|XP_004137261.1| PREDICTED: uncharacterized protein LOC101217963 [Cucumis sativus] gi|449476543|ref|XP_004154766.1| PREDICTED: uncharacterized LOC101217963 [Cucumis sativus]

 Score =  149 bits (376), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 63/85 (74%), Positives = 76/85 (89%)

Query: 1  MGRWMRPEVYPLMAAMTFVASMCVFQLTRNVLLNPDVRINKGRRSMGVLENEEEGEKYAE 60
          MGRWM+PEVYPL+AAM FV +MC+FQLTRN+L+NPDVR+ K  R MGVL+NEEEGEKY+E
Sbjct: 1  MGRWMKPEVYPLLAAMGFVTTMCIFQLTRNILINPDVRVKKSHRRMGVLDNEEEGEKYSE 60

Query: 61 HGLRRFLRTRPPQVMPAINRFFTQD 85
          H LRRFLRTRPP++MP IN +F+QD
Sbjct: 61 HSLRRFLRTRPPEIMPTINHYFSQD 85

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|38194922|gb|AAR13310.1| B12D-like protein [Phaseolus vulgaris]

 Score =  148 bits (374), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 70/99 (70%), Positives = 79/99 (79%), Gaps = 13/99 (13%)

Query: 1   MGRWMRPEVYPLMAAMTFVASMCVFQLTRNVLLNPDV-------------RINKGRRSMG 47
           MGRWM+PEVYPL+AAMTFV SMCVFQLTRN+L NPDV             R+NK RRSM 
Sbjct: 30  MGRWMKPEVYPLLAAMTFVTSMCVFQLTRNLLGNPDVSILVINFWSENWYRVNKTRRSMA 89

Query: 48  VLENEEEGEKYAEHGLRRFLRTRPPQVMPAINRFFTQDK 86
           VL+N EEGEKYAEHGLR+FLRTRPP++MP IN FF+QDK
Sbjct: 90  VLDNREEGEKYAEHGLRKFLRTRPPEIMPTINHFFSQDK 128

Source: Phaseolus vulgaris

Species: Phaseolus vulgaris

Genus: Phaseolus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255580348|ref|XP_002531002.1| conserved hypothetical protein [Ricinus communis] gi|223529429|gb|EEF31390.1| conserved hypothetical protein [Ricinus communis]

 Score =  147 bits (370), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 64/86 (74%), Positives = 75/86 (87%)

Query: 1  MGRWMRPEVYPLMAAMTFVASMCVFQLTRNVLLNPDVRINKGRRSMGVLENEEEGEKYAE 60
          M RW++PEVYPLMAAMTFV S+C FQLTRN+ LNPDVRINK  R   VLENE EGE+YAE
Sbjct: 1  MARWIKPEVYPLMAAMTFVTSLCAFQLTRNMFLNPDVRINKAHRRTAVLENEVEGEQYAE 60

Query: 61 HGLRRFLRTRPPQVMPAINRFFTQDK 86
          HGLR+FLRTRPP++MP+IN FF++DK
Sbjct: 61 HGLRKFLRTRPPEIMPSINHFFSEDK 86

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388511405|gb|AFK43764.1| unknown [Medicago truncatula]

 Score =  145 bits (365), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 65/86 (75%), Positives = 76/86 (88%)

Query: 1  MGRWMRPEVYPLMAAMTFVASMCVFQLTRNVLLNPDVRINKGRRSMGVLENEEEGEKYAE 60
          MGRWM+PEVYPL+AAMTFV SMCVFQLTRN+L NPDVRI+K  R+ GV +N+EEGEKYA+
Sbjct: 1  MGRWMKPEVYPLLAAMTFVTSMCVFQLTRNLLQNPDVRISKNGRTKGVFDNKEEGEKYAK 60

Query: 61 HGLRRFLRTRPPQVMPAINRFFTQDK 86
          HGLR FLRTRPP+VMP IN FF++ K
Sbjct: 61 HGLRNFLRTRPPEVMPTINHFFSEQK 86

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388512571|gb|AFK44347.1| unknown [Lotus japonicus]

 Score =  142 bits (358), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 65/86 (75%), Positives = 78/86 (90%), Gaps = 1/86 (1%)

Query: 1  MGRWMRPEVYPLMAAMTFVASMCVFQLTRNVLLNPDVRINKGRRSMGVL-ENEEEGEKYA 59
          MGRWM+PEVYPL+AAMTFV  MCVFQLTRN+L NPDVRI+K RRSMGVL +N+EEGE+YA
Sbjct: 1  MGRWMKPEVYPLLAAMTFVTGMCVFQLTRNLLGNPDVRISKARRSMGVLFDNKEEGERYA 60

Query: 60 EHGLRRFLRTRPPQVMPAINRFFTQD 85
          EHGLR+FLRTR P++MP IN FF+++
Sbjct: 61 EHGLRKFLRTRQPEIMPTINHFFSEE 86

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297815286|ref|XP_002875526.1| hypothetical protein ARALYDRAFT_323026 [Arabidopsis lyrata subsp. lyrata] gi|297321364|gb|EFH51785.1| hypothetical protein ARALYDRAFT_323026 [Arabidopsis lyrata subsp. lyrata]

 Score =  139 bits (349), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 61/87 (70%), Positives = 74/87 (85%)

Query: 1  MGRWMRPEVYPLMAAMTFVASMCVFQLTRNVLLNPDVRINKGRRSMGVLENEEEGEKYAE 60
          MGRW+RPEVYPL+ AM FV +M VFQLTRN LLNPD RINK  R MG+LENE+EGEKYA+
Sbjct: 1  MGRWVRPEVYPLLGAMGFVTTMVVFQLTRNALLNPDCRINKEHRKMGILENEDEGEKYAQ 60

Query: 61 HGLRRFLRTRPPQVMPAINRFFTQDKD 87
          H  R++LRTR PQVMP++NRFF+Q+ +
Sbjct: 61 HNFRKYLRTRQPQVMPSLNRFFSQEDN 87

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	94
TAIR|locus:2829357	87	AT3G29970 "AT3G29970" [Arabido	0.904	0.977	0.705	1.1e-30
TAIR|locus:2100484	88	AT3G48140 "AT3G48140" [Arabido	0.861	0.920	0.518	8e-21

TAIR|locus:2829357 AT3G29970 "AT3G29970" [Arabidopsis thaliana (taxid:3702)]

 Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 60/85 (70%), Positives = 72/85 (84%)

Query:     1 MGRWMRPEVYPLMAAMTFVASMCVFQLTRNVLLNPDVRINKGRRSMGVLENEEEGEKYAE 60
             MGRW+RPEVYPL+ AM FV SM VFQLTRN  LNPD RINK  R MG+LEN++EGEKYA+
Sbjct:     1 MGRWVRPEVYPLLGAMGFVTSMVVFQLTRNAFLNPDCRINKEHRKMGILENKDEGEKYAQ 60

Query:    61 HGLRRFLRTRPPQVMPAINRFFTQD 85
             H  R++LRTR PQVMP++NRFF+Q+
Sbjct:    61 HNFRKYLRTRQPQVMPSLNRFFSQE 85

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2100484 AT3G48140 "AT3G48140" [Arabidopsis thaliana (taxid:3702)]

 Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
 Identities = 42/81 (51%), Positives = 57/81 (70%)

Query:     3 RWMRPEVYPLMAAMTFVASMCVFQLTRNVLLNPDVRINKGRRSMGVLENEEEGEKYAEHG 62
             RW+RPEVYPL AA      +C F L RN+  NP+VR  K  R+ G+L+N  EGEKY E+ 
Sbjct:     4 RWLRPEVYPLFAATGVAVGICAFSLIRNITGNPEVRCTKENRAAGILDNHAEGEKYKENF 63

Query:    63 LRRFLRTRPPQVMPAINRFFT 83
             LR+F+R + P++MP +N+FFT
Sbjct:    64 LRKFVRNKKPEIMPGLNKFFT 84


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.138   0.424    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       94        94   0.00091  102 3  11 22  0.45    29
                                                     29  0.42    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  546 (58 KB)
  Total size of DFA:  110 KB (2074 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.73u 0.10s 11.83t   Elapsed:  00:00:01
  Total cpu time:  11.73u 0.10s 11.83t   Elapsed:  00:00:01
  Start:  Fri May 10 09:46:53 2013   End:  Fri May 10 09:46:54 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0010150 "leaf senescence" evidence=ISS

GO:0005777 "peroxisome" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_IV001198 hypothetical protein (86 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	94
pfam06522	73	pfam06522, B12D, NADH-ubiquinone reductase complex	1e-25

>gnl|CDD|203472 pfam06522, B12D, NADH-ubiquinone reductase complex 1 MLRQ subunit

 Score = 90.0 bits (224), Expect = 1e-25
 Identities = 29/78 (37%), Positives = 34/78 (43%), Gaps = 8/78 (10%)

Query: 4  WMRPEVYPLMAAMTFVASMCVFQLTRNVLLNPDVRINKGRRSMGVLENEEEGEKYAEHGL 63
            RPE+ PL  A+        F L R +L NPDVR +K         N E  EKYA H  
Sbjct: 1  KKRPELIPLFVAVGAAVGGATFYLLRLLLTNPDVRWDKKN-------NPEPWEKYAPHKQ 53

Query: 64 RRFLRTRPPQVMPAINRF 81
           +F R   P   P  N F
Sbjct: 54 YKFYRVN-PDYSPLKNEF 70

The MLRQ subunit of mitochondrial NADH-ubiquinone reductase complex I is nuclear and is found in plants, insects, fungi and higher metazoans. It appears to act within the membrane and, in mammals, is highly expressed in muscle and neural tissue, indicative of a role in ATP generation. Length = 73

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	94
PF06522	73	B12D: NADH-ubiquinone reductase complex 1 MLRQ sub	99.91

>PF06522 B12D: NADH-ubiquinone reductase complex 1 MLRQ subunit; InterPro: IPR010530 The MLRQ subunit of mitochondrial NADH-ubiquinone reductase complex I is nuclear [] and is found in plants [], insects, fungi and higher metazoans []

Probab=99.91  E-value=1.3e-25  Score=145.73  Aligned_cols=72  Identities=39%  Similarity=0.576  Sum_probs=69.4

Q ss_pred             ccCcchhhHHHHHHHHHHHHHHhhhhhhccCCceeeecCCCCCcccchhHhhhhhhhhhhhHhhhcCCCCcccccccccC
Q 048115            4 WMRPEVYPLMAAMTFVASMCVFQLTRNVLLNPDVRINKGRRSMGVLENEEEGEKYAEHGLRRFLRTRPPQVMPAINRFFT   83 (94)
Q Consensus         4 Wi~pEvyPL~~avgvAvg~~~~~~~R~l~~nP~vRv~K~~R~~gv~en~~EG~~y~~H~~Rr~~~~~~p~imp~~n~~f~   83 (94)
                      |.+|||||||++||+|+|+|+|+++|++++||||+|+|++|       .+++++|++|..|||++.+. +|||.+|++ +
T Consensus         1 ~~~pel~PL~~~vg~a~~~a~~~~~r~l~~~PdV~~~k~~~-------~~pw~~~~~~~~~K~~~~~~-~~~~~~~~~-p   71 (73)
T PF06522_consen    1 KKHPELYPLFVIVGVAVGGATFYLYRLLLTNPDVRWNKKNR-------PEPWEKYKPHEQRKFYSINQ-DYMPLKNNF-P   71 (73)
T ss_pred             CCCccccchHHHHHHHHHHHHHHHHHHHhcCCCeEEEecCC-------cChhhhcCccccEEeecccc-ccccccccC-C
Confidence            89999999999999999999999999999999999999999       68999999999999999999 999999998 6


Q ss_pred             C
Q 048115           84 Q   84 (94)
Q Consensus        84 ~   84 (94)
                      |
T Consensus        72 d   72 (73)
T PF06522_consen   72 D   72 (73)
T ss_pred             C
Confidence            5

It appears to act within the membrane and, in mammals, is highly expressed in muscle and neural tissue, indicative of a role in ATP generation [].

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00