Citrus Sinensis ID: 048131

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120----
Protein Sequence
MAQARGSAIIAVVTVLLLLMHCNIGSATTFKVGDDGGWVFGVQNWPEGKTFKCGDILEFNYDPQRHNVIIVDQEGHDSCKPASDAKKFQTGKDQIVLNHGKNFFICGVPTHCSDHGMKLEINVE
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHHHHccccEEEEEcccccccccccccccccEEEEccEEEEEEcccccEEEEEccccccccccccccccccccccEEEccccccEEEEcccccccccccEEEEEEc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHccEEEccHHHccccccccccccccEccccEEEEEcccccccEEEEcHHHHHHcccccccEEEcccEEEEEcccEEEEEEcccccccHHcccEEEEEEc
Coil and Loop (DISEMBL)
MAQARGSAIIAVVTVLLLLMHCnigsattfkvgddggwvfgvqnwpegktfkcgdilefnydpqrhnviivdqeghdsckpasdakkfqtgkdQIVLNhgknfficgvpthcsdhgmkleinve
Flexible Loop (DISEMBL)
MAQARGSAIIAVVTVLLLLMHCNIGSATTFKVGDDGGWVFGVQNWPEGKTFKCGDILEFNYDPQRHNVIIVDQEGHDSCKPASDAKKFQTGKDQIVLNHGKNFFICGVPTHCSDHGMKLEINVE
Low Complexity Region (SEG)
MAQARGSAIIAvvtvllllMHCNIGSATTFKVGDDGGWVFGVQNWPEGKTFKCGDILEFNYDPQRHNVIIVDQEGHDSCKPASDAKKFQTGKDQIVLNHGKNFFICGVPTHCSDHGMKLEINVE
Disordered region (IsUnstruct)
*******AIIAVVTVLLLLMHCNIGSATTFKVGDDGGWVFGVQNWPEGKTFKCGDILEFNYDPQRHNVIIVDQ****************TGKDQIVLNHGKNFFICGVPTHCSDH*********
Disordered Region (DISOPRED)
************VTVLLLLMHCNIGSATTFKVGDDGGWVFGVQNWPEGKTFKCGDILEFNYDPQRHNVIIVDQEGHDSCKPASDAKKFQTGKDQIVLNHGKNFFICGVPTHCSDHGMKLEINVE
Disordered Region (DISEMBL)
MAQARGSAIIAVVTVLLLLMHCNIGSATTFKVGDDGGWVFGVQNWPEGKTFKCGDILEFNYDPQRHNVIIVDQEG************FQTGKDQIVLNHGKNFFICGVPTHCSDHGMKLEINVE
Disordered Region (DISPRO)
****RGSAIIAVVTVLLLLMHCNIGSATTFKVGDDGGWVFGVQNWPEGKTFKCGDILEFNYDPQRHNVIIVDQEGHDSCKPASDAKKFQTGKDQIVLNHGKNFFICGVPTHCSDHGMKLEINVE
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAQARGSAIIAVVTVLLLLMHCNIGSATTFKVGDDGGWVFGVQNWPEGKTFKCGDILEFNYDPQRHNVIIVDQEGHDSCKPASDAKKFQTGKDQIVLNHGKNFFICGVPTHCSDHGMKLEINVE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	124	2.2.26 [Sep-21-2011]
Q8LG89	129	Basic blue protein OS=Ara	yes	no	0.967	0.930	0.433	2e-27
P60496	126	Chemocyanin OS=Lilium lon	N/A	no	0.983	0.968	0.420	1e-24
P00303	96	Basic blue protein OS=Cuc	N/A	no	0.75	0.968	0.468	1e-22
P80728	108	Mavicyanin OS=Cucurbita p	N/A	no	0.782	0.898	0.417	1e-14
Q41001	189	Blue copper protein OS=Pi	N/A	no	0.903	0.592	0.410	5e-14
O80517	202	Uclacyanin-2 OS=Arabidops	no	no	0.685	0.420	0.444	1e-13
P00302	107	Stellacyanin OS=Toxicoden	N/A	no	0.766	0.887	0.413	1e-13
Q07488	196	Blue copper protein OS=Ar	no	no	0.75	0.474	0.35	2e-09
P42849	115	Umecyanin OS=Armoracia ru	N/A	no	0.637	0.686	0.395	2e-08
P29602	137	Cucumber peeling cupredox	N/A	no	0.774	0.700	0.342	1e-07

>sp|Q8LG89|BABL_ARATH Basic blue protein OS=Arabidopsis thaliana GN=ARPN PE=1 SV=2

 Score =  120 bits (302), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 55/127 (43%), Positives = 81/127 (63%), Gaps = 7/127 (5%)

Query: 1   MAQARGSA------IIAVVTVLLLLMHCNIGSATTFKVGDDGGWVFGVQNWPEGKTFKCG 54
           MA+ RGSA      I+ ++ V +LL+  +   A T+ VGD G W F    WP+GK F+ G
Sbjct: 1   MAKGRGSASWSARAIVTLMAVSVLLLQADYVQAATYTVGDSGIWTFNAVGWPKGKHFRAG 60

Query: 55  DILEFNYDPQRHNVIIVDQEGHDSCKPASDAKKFQTGKDQIVLNHGKNFFICGVPTHCSD 114
           D+L FNY+P+ HNV+ VD   +++CK  + AK + +GKD+I L+ G+NFFIC  P HC +
Sbjct: 61  DVLVFNYNPRMHNVVKVDSGSYNNCKTPTGAKPYTSGKDRITLSKGQNFFICNFPNHC-E 119

Query: 115 HGMKLEI 121
             MK+ +
Sbjct: 120 SDMKIAV 126

Forms a concentration gradient along the pollen tube growth path, with a lower level in the stigma papilla cell wall and a higher level in the transmitting tract extracellular matix of the style.
Arabidopsis thaliana (taxid: 3702)

>sp|P60496|BABL_LILLO Chemocyanin OS=Lilium longiflorum PE=1 SV=1

 Score =  111 bits (278), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 53/126 (42%), Positives = 77/126 (61%), Gaps = 4/126 (3%)

Query: 1   MAQARGSAIIAVVTVLLLLM---HCNIGSATTFKVGDDGGWVFGVQNWPEGKTFKCGDIL 57
           MAQ  GSA  A+V  ++L+    +C +  +  + VGD GGW FG   WP GKTF+ GD+L
Sbjct: 1   MAQGSGSAERALVLGVVLVFLVFNCEVAESVVYTVGDGGGWTFGTSGWPAGKTFRAGDVL 60

Query: 58  EFNYDPQRHNVIIVDQEGHDSCKPASDAKKFQTGKDQIVLNHGKNFFICGVPTHCSDHGM 117
            F Y+P  HNV+ V   G+ SC  +  ++ F++G D+I L+ G N+FIC VP HC   G+
Sbjct: 61  VFKYNPAVHNVVSVPAGGYKSCTASPGSRVFKSGDDRITLSRGTNYFICSVPGHC-QGGL 119

Query: 118 KLEINV 123
           K+ +  
Sbjct: 120 KIAVTA 125

Diffusible chemotropic factor that induces pollen tube chemotropism.

Lilium longiflorum (taxid: 4690)

>sp|P00303|BABL_CUCSA Basic blue protein OS=Cucumis sativus PE=1 SV=1

 Score =  105 bits (261), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 44/94 (46%), Positives = 63/94 (67%), Gaps = 1/94 (1%)

Query: 30  FKVGDDGGWVFGVQNWPEGKTFKCGDILEFNYDPQRHNVIIVDQEGHDSCKPASDAKKFQ 89
           + VG  GGW F  ++WP+GK F+ GDIL FNY+P  HNV++V+Q G  +C   + AK + 
Sbjct: 3   YVVGGSGGWTFNTESWPKGKRFRAGDILLFNYNPXMHNVVVVNQGGFSTCNTPAGAKVYT 62

Query: 90  TGKDQIVLNHGKNFFICGVPTHCSDHGMKLEINV 123
           +G+DQI L  G+++FIC  P HC   GMK+ +N 
Sbjct: 63  SGRDQIKLPKGQSYFICNFPGHCQS-GMKIAVNA 95

Cucumis sativus (taxid: 3659)

>sp|P80728|MAVI_CUCPE Mavicyanin OS=Cucurbita pepo PE=1 SV=1

 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/103 (41%), Positives = 55/103 (53%), Gaps = 6/103 (5%)

Query: 27  ATTFKVGDDGGWV----FGVQNWPEGKTFKCGDILEFNYDPQRHNVIIVDQEGHDSCKPA 82
           AT  KVGD  GW     +    W     F  GD L FNY+ + HNV+ VDQE   SC  +
Sbjct: 1   ATVHKVGDSTGWTTLVPYDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNSS 60

Query: 83  SDAKKFQTGKDQIVLNH-GKNFFICGVPTHCSDHGMKLEINVE 124
           S A  + +G D I L   G  +F+CG+P HC   G K+EI V+
Sbjct: 61  SPAASYTSGADSIPLKRPGTFYFLCGIPGHC-QLGQKVEIKVD 102

Cucurbita pepo (taxid: 3663)

>sp|Q41001|BCP_PEA Blue copper protein OS=Pisum sativum PE=2 SV=1

 Score = 76.3 bits (186), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 48/117 (41%), Positives = 60/117 (51%), Gaps = 5/117 (4%)

Query: 12  VVTVLLLLMHCNIGS-ATTFKVGDDGGWVFG--VQNWPEGKTFKCGDILEFNYDPQRHNV 68
           V+  LL +++  + S AT + VGD  GWV G     W   KTF  GD L FNY    H V
Sbjct: 8   VLCFLLAIINMALPSLATVYTVGDTSGWVIGGDYSTWASDKTFAVGDSLVFNYGAGAHTV 67

Query: 69  IIVDQEGHDSCKPASDAKKFQTGKDQIVLNH-GKNFFICGVPTHCSDHGMKLEINVE 124
             V +  + SC   +      TG   I L   GK++FICGVP H S  GMKL I V+
Sbjct: 68  DEVKESDYKSCTSGNSISTDSTGATTIPLKKAGKHYFICGVPGH-STGGMKLSIKVK 123

Pisum sativum (taxid: 3888)

>sp|O80517|BCB2_ARATH Uclacyanin-2 OS=Arabidopsis thaliana GN=At2g44790 PE=1 SV=1

 Score = 75.5 bits (184), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/90 (44%), Positives = 51/90 (56%), Gaps = 5/90 (5%)

Query: 38  WVFGV--QNWPEGKTFKCGDILEFNYDPQRHNVIIVDQEGHDSCKPASDAKKFQTGKDQI 95
           W  GV    W  GKTF+ GDILEF Y    H V +VD+ G+D C  +S  +    G  +I
Sbjct: 36  WTTGVDYSGWATGKTFRVGDILEFKYG-SSHTVDVVDKAGYDGCDASSSTENHSDGDTKI 94

Query: 96  VLNH-GKNFFICGVPTHC-SDHGMKLEINV 123
            L   G N+FIC  P HC ++ GMKL +NV
Sbjct: 95  DLKTVGINYFICSTPGHCRTNGGMKLAVNV 124

Probably acts as an electron carrier involved in oxygen activation and/or lignin formation.

Arabidopsis thaliana (taxid: 3702)

>sp|P00302|STEL_TOXVR Stellacyanin OS=Toxicodendron vernicifluum PE=1 SV=1

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/104 (41%), Positives = 57/104 (54%), Gaps = 9/104 (8%)

Query: 28  TTFKVGDDGGW---VFGVQN----WPEGKTFKCGDILEFNYDPQRHNVIIVDQEGHDSCK 80
           T + VGD  GW    FG  +    W   KTF  GD+L F YD + HNV  V Q+ + SC 
Sbjct: 1   TVYTVGDSAGWKVPFFGDVDYDWKWASNKTFHIGDVLVFKYDRRFHNVDKVTQKNYQSCN 60

Query: 81  PASDAKKFQTGKDQIVLNH-GKNFFICGVPTHCSDHGMKLEINV 123
             +    + TG B+I L   G+ ++ICGVP HC D G K+ INV
Sbjct: 61  DTTPIASYNTGBBRINLKTVGQKYYICGVPKHC-DLGQKVHINV 103

Toxicodendron vernicifluum (taxid: 4013)

>sp|Q07488|BCB1_ARATH Blue copper protein OS=Arabidopsis thaliana GN=BCB PE=1 SV=2

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 49/100 (49%), Gaps = 7/100 (7%)

Query: 30  FKVGDDGGWVFGV-----QNWPEGKTFKCGDILEFNYDPQRHNVIIVDQEGHDSCKPASD 84
           + VGDD  W   +       W  GKTF+ GD LEF++   RH+V +V +   ++C+    
Sbjct: 25  YDVGDDTEWTRPMDPEFYTTWATGKTFRVGDELEFDFAAGRHDVAVVSEAAFENCEKEKP 84

Query: 85  AKKFQTGKDQIVLN-HGKNFFICGVPTHCSDHGMKLEINV 123
                    +I+LN  G  +FIC V  HC   G KL I V
Sbjct: 85  ISHMTVPPVKIMLNTTGPQYFICTVGDHCR-FGQKLSITV 123

Probably acts as an electron carrier.

Arabidopsis thaliana (taxid: 3702)

>sp|P42849|UMEC_ARMRU Umecyanin OS=Armoracia rusticana PE=1 SV=1

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 45/81 (55%), Gaps = 2/81 (2%)

Query: 44  NWPEGKTFKCGDILEFNYDPQRHNVIIVDQEGHDSCKPASDAKKFQTGKDQIVLN-HGKN 102
            W  GKTF+ GD LEF++    H+V +V ++  D+CK  +      T   +I+LN  G  
Sbjct: 22  TWATGKTFRVGDELEFDFAAGMHDVAVVTKDAFDNCKKENPISHMTTPPVKIMLNTTGPQ 81

Query: 103 FFICGVPTHCSDHGMKLEINV 123
           ++IC V  HC   G KL INV
Sbjct: 82  YYICTVGDHCR-VGQKLSINV 101

Not yet known.

Armoracia rusticana (taxid: 3704)

>sp|P29602|CPC_CUCSA Cucumber peeling cupredoxin OS=Cucumis sativus PE=1 SV=3

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 53/105 (50%), Gaps = 9/105 (8%)

Query: 27  ATTFKVGDDGGWVFG-----VQNWPEGKTFKCGDILEFNYDPQRHNVIIVD-QEGHDSCK 80
           +T   VGD+ GW           W  GKTF+ GD L+FN+    HNV  ++ ++  D+C 
Sbjct: 2   STVHIVGDNTGWSVPSSPNFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACN 61

Query: 81  PASDAKKFQTGKDQI--VLNHGKNFFICGVPTHCSDHGMKLEINV 123
             +     +     I  +   G ++F+C V THCS+ G KL INV
Sbjct: 62  FVNSDNDVERTSPVIERLDELGMHYFVCTVGTHCSN-GQKLSINV 105

Cucumis sativus (taxid: 3659)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	124
224054286	125	predicted protein [Populus trichocarpa]	0.991	0.984	0.492	5e-29
351723331	124	uncharacterized protein LOC100305588 pre	0.983	0.983	0.516	1e-28
225448071	123	PREDICTED: basic blue protein isoform 1	0.975	0.983	0.475	1e-28
356546176	124	PREDICTED: basic blue protein-like [Glyc	0.983	0.983	0.471	1e-27
388506154	126	unknown [Medicago truncatula]	0.975	0.960	0.464	1e-27
449464494	125	PREDICTED: basic blue protein-like [Cucu	0.975	0.968	0.475	8e-27
255558452	126	Basic blue protein, putative [Ricinus co	0.991	0.976	0.472	9e-27
298204590	135	unnamed protein product [Vitis vinifera]	0.975	0.896	0.479	2e-26
225448069	124	PREDICTED: basic blue protein [Vitis vin	0.975	0.975	0.479	2e-26
6688810	117	basic blue protein [Medicago sativa subs	0.911	0.965	0.473	6e-26

>gi|224054286|ref|XP_002298184.1| predicted protein [Populus trichocarpa] gi|222845442|gb|EEE82989.1| predicted protein [Populus trichocarpa]

 Score =  131 bits (330), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 62/126 (49%), Positives = 80/126 (63%), Gaps = 3/126 (2%)

Query: 1   MAQARGSAIIAVVTVLL--LLMHCNIGSATTFKVGDDGGWVFGVQNWPEGKTFKCGDILE 58
           M Q RGSA++A V V+L  LL+H ++  A T+ VG  GGW F V  WP+GK+FK GDIL 
Sbjct: 1   MVQGRGSAMVATVAVMLCMLLLHFDMAHAATYTVGGPGGWTFNVSGWPKGKSFKAGDILV 60

Query: 59  FNYDPQRHNVIIVDQEGHDSCKPASDAKKFQTGKDQIVLNHGKNFFICGVPTHCSDHGMK 118
           FNY    HNV+ V++ G+ SC     AK + +GKDQI L  G+NFFIC    HC   GMK
Sbjct: 61  FNYSTAAHNVVAVNKAGYSSCTSPRGAKVYTSGKDQIKLVKGQNFFICSFAGHCQS-GMK 119

Query: 119 LEINVE 124
           + +N  
Sbjct: 120 IAVNAA 125

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723331|ref|NP_001237531.1| uncharacterized protein LOC100305588 precursor [Glycine max] gi|255625997|gb|ACU13343.1| unknown [Glycine max]

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 64/124 (51%), Positives = 79/124 (63%), Gaps = 2/124 (1%)

Query: 1   MAQARGSAIIA-VVTVLLLLMHCNIGSATTFKVGDDGGWVFGVQNWPEGKTFKCGDILEF 59
           M+Q RGSA +  VVTV+ LL      +A T+ VG  GGW F    WP GK F+ GDIL F
Sbjct: 1   MSQGRGSASLPIVVTVVSLLCLLERANAATYSVGGPGGWTFNTNAWPNGKRFRAGDILIF 60

Query: 60  NYDPQRHNVIIVDQEGHDSCKPASDAKKFQTGKDQIVLNHGKNFFICGVPTHCSDHGMKL 119
           NYD   HNV+ VD+ G++SCK    AK F +GKDQI L  G+N+FIC  P HC + GMK+
Sbjct: 61  NYDSTTHNVVAVDRSGYNSCKTPGGAKVFSSGKDQIKLARGQNYFICNYPGHC-ESGMKV 119

Query: 120 EINV 123
            IN 
Sbjct: 120 AINA 123

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225448071|ref|XP_002275987.1| PREDICTED: basic blue protein isoform 1 [Vitis vinifera] gi|359486008|ref|XP_003633373.1| PREDICTED: basic blue protein isoform 2 [Vitis vinifera] gi|298204591|emb|CBI23866.3| unnamed protein product [Vitis vinifera]

 Score =  130 bits (326), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 58/122 (47%), Positives = 78/122 (63%), Gaps = 1/122 (0%)

Query: 1   MAQARGSAIIAVVTVLLLLMHCNIGSATTFKVGDDGGWVFGVQNWPEGKTFKCGDILEFN 60
           MA  RGSA++A+V VL L++ C++  A TF VG   GW F    WP+GK FK GD+L FN
Sbjct: 1   MAVGRGSAVVAIVLVLCLVLPCDMVDAATFTVGGASGWAFNAVGWPKGKRFKAGDVLVFN 60

Query: 61  YDPQRHNVIIVDQEGHDSCKPASDAKKFQTGKDQIVLNHGKNFFICGVPTHCSDHGMKLE 120
           Y P  HNV+ V++ G++ C     +K +QTGKDQI L  G N+F+C  P HC   GMK+ 
Sbjct: 61  YSPSAHNVVAVNKAGYNGCTTPRGSKVYQTGKDQIKLVKGANYFLCNFPGHCQS-GMKIA 119

Query: 121 IN 122
           + 
Sbjct: 120 VT 121

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356546176|ref|XP_003541507.1| PREDICTED: basic blue protein-like [Glycine max]

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 58/123 (47%), Positives = 79/123 (64%), Gaps = 1/123 (0%)

Query: 1   MAQARGSAIIAVVTVLLLLMHCNIGSATTFKVGDDGGWVFGVQNWPEGKTFKCGDILEFN 60
           MAQ R SA   ++  +L+L +  +  A T+ VGD  GW + V NWP GK+FK GDILEF 
Sbjct: 1   MAQGRSSAATMLLLCMLVL-YSEMVHAATYVVGDATGWAYNVNNWPNGKSFKAGDILEFK 59

Query: 61  YDPQRHNVIIVDQEGHDSCKPASDAKKFQTGKDQIVLNHGKNFFICGVPTHCSDHGMKLE 120
           Y P  HNVI VD+ G+++C P  +++ F +G D I L  G N+FICG P HC  HGM++ 
Sbjct: 60  YSPFAHNVIQVDEFGYNTCIPTFNSRLFFSGDDHIQLAKGLNYFICGFPGHCQLHGMRIA 119

Query: 121 INV 123
           +N 
Sbjct: 120 VNA 122

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388506154|gb|AFK41143.1| unknown [Medicago truncatula]

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 58/125 (46%), Positives = 84/125 (67%), Gaps = 4/125 (3%)

Query: 1   MAQARGSA---IIAVVTVLLLLMHCNIGSATTFKVGDDGGWVFGVQNWPEGKTFKCGDIL 57
           M++ RGSA   ++ V+++L L++     +A T+ VG   GW FG++ WP GK+F  GD+L
Sbjct: 1   MSKGRGSAAMNMVIVISLLCLMVLAKSTNAETYTVGGPKGWTFGIKKWPNGKSFVAGDVL 60

Query: 58  EFNYDPQRHNVIIVDQEGHDSCKPASDAKKFQTGKDQIVLNHGKNFFICGVPTHCSDHGM 117
           +F Y+P+ HNV++VDQ G+D CK    +K F+TG DQI L  G N+FIC +P HC   GM
Sbjct: 61  DFGYNPKMHNVVLVDQTGYDKCKTPEGSKVFRTGSDQIELVKGDNYFICNLPGHCQS-GM 119

Query: 118 KLEIN 122
           K+ IN
Sbjct: 120 KIYIN 124

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464494|ref|XP_004149964.1| PREDICTED: basic blue protein-like [Cucumis sativus] gi|449526049|ref|XP_004170027.1| PREDICTED: LOW QUALITY PROTEIN: basic blue protein-like [Cucumis sativus]

 Score =  124 bits (310), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 59/124 (47%), Positives = 79/124 (63%), Gaps = 3/124 (2%)

Query: 1   MAQARGSAIIAVVTVLLLLM--HCNIGSATTFKVGDDGGWVFGVQNWPEGKTFKCGDILE 58
           M + RGSA++ VV V +LLM  + ++  A  + VG   GW F V +WP+GK F+ GD L 
Sbjct: 1   MGEGRGSAMVCVVMVCMLLMLQYSHMAHAAVYTVGGAQGWTFNVASWPKGKRFRAGDTLV 60

Query: 59  FNYDPQRHNVIIVDQEGHDSCKPASDAKKFQTGKDQIVLNHGKNFFICGVPTHCSDHGMK 118
           FNY P  HNV+ V++ G+  C     +K FQTGKDQI L  G+NFFIC +P HC   GMK
Sbjct: 61  FNYSPSAHNVVGVNRLGYSRCITPRGSKVFQTGKDQIKLVKGQNFFICNIPGHCQG-GMK 119

Query: 119 LEIN 122
           + +N
Sbjct: 120 IAVN 123

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255558452|ref|XP_002520251.1| Basic blue protein, putative [Ricinus communis] gi|223540470|gb|EEF42037.1| Basic blue protein, putative [Ricinus communis]

 Score =  124 bits (310), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 60/127 (47%), Positives = 78/127 (61%), Gaps = 4/127 (3%)

Query: 1   MAQARGSAIIAVVTVLLLLMHCNIGS---ATTFKVGDDGGWVFGVQNWPEGKTFKCGDIL 57
           MAQ RGSA +A+ TV+ LL    +     A T+ VG  GGW F V +WP+GK FK GD L
Sbjct: 1   MAQGRGSANLAIATVVALLCLLTLTKQVRAATYTVGGSGGWTFNVDSWPKGKRFKAGDTL 60

Query: 58  EFNYDPQRHNVIIVDQEGHDSCKPASDAKKFQTGKDQIVLNHGKNFFICGVPTHCSDHGM 117
            FNYD   HNV+ V++  + SC   + AK + +G+DQI L  G+NFFICG+  HC   GM
Sbjct: 61  VFNYDSTVHNVVAVNKGSYTSCSAPAGAKVYTSGRDQIKLAKGQNFFICGISGHC-QSGM 119

Query: 118 KLEINVE 124
           K+ I   
Sbjct: 120 KIAITAA 126

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298204590|emb|CBI23865.3| unnamed protein product [Vitis vinifera]

 Score =  122 bits (307), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 59/123 (47%), Positives = 77/123 (62%), Gaps = 2/123 (1%)

Query: 1   MAQARGSAIIAVVTVLLLLMHCNIGSATTFKVGDDGGWVFGVQNWPEGKTFKCGDILEFN 60
           M + RGSAI+A V +  LL+HC+   ATT+ VG   GW   V  WP GK F  GDIL FN
Sbjct: 12  MGEGRGSAIVATVLLFCLLLHCDTAHATTYAVGGAKGWTLDVVGWPYGKRFMAGDILVFN 71

Query: 61  YDPQRHNVIIVDQEGHDSCK-PASDAKKFQTGKDQIVLNHGKNFFICGVPTHCSDHGMKL 119
           Y+   H+V+ V++ G+++C  P   +K + TGKDQI L  G+NFFIC  P HC   GMK+
Sbjct: 72  YNAAAHDVVSVNKVGYNTCTMPRGASKVYHTGKDQIKLVKGQNFFICSFPGHCQS-GMKI 130

Query: 120 EIN 122
            I 
Sbjct: 131 AIT 133

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225448069|ref|XP_002275963.1| PREDICTED: basic blue protein [Vitis vinifera]

 Score =  122 bits (307), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 59/123 (47%), Positives = 77/123 (62%), Gaps = 2/123 (1%)

Query: 1   MAQARGSAIIAVVTVLLLLMHCNIGSATTFKVGDDGGWVFGVQNWPEGKTFKCGDILEFN 60
           M + RGSAI+A V +  LL+HC+   ATT+ VG   GW   V  WP GK F  GDIL FN
Sbjct: 1   MGEGRGSAIVATVLLFCLLLHCDTAHATTYAVGGAKGWTLDVVGWPYGKRFMAGDILVFN 60

Query: 61  YDPQRHNVIIVDQEGHDSCK-PASDAKKFQTGKDQIVLNHGKNFFICGVPTHCSDHGMKL 119
           Y+   H+V+ V++ G+++C  P   +K + TGKDQI L  G+NFFIC  P HC   GMK+
Sbjct: 61  YNAAAHDVVSVNKVGYNTCTMPRGASKVYHTGKDQIKLVKGQNFFICSFPGHCQS-GMKI 119

Query: 120 EIN 122
            I 
Sbjct: 120 AIT 122

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6688810|emb|CAB65280.1| basic blue protein [Medicago sativa subsp. x varia]

 Score =  121 bits (303), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 54/114 (47%), Positives = 76/114 (66%), Gaps = 1/114 (0%)

Query: 9   IIAVVTVLLLLMHCNIGSATTFKVGDDGGWVFGVQNWPEGKTFKCGDILEFNYDPQRHNV 68
           ++ V+++L LL      +A T+ VG   GW FG++ WP GK+F  GD+L+F Y+P+ HNV
Sbjct: 3   MVTVISLLGLLFLAKSTNAETYTVGGPKGWTFGIKKWPNGKSFVAGDVLDFGYNPKMHNV 62

Query: 69  IIVDQEGHDSCKPASDAKKFQTGKDQIVLNHGKNFFICGVPTHCSDHGMKLEIN 122
           ++VDQ G+D CK    +K F+TG DQI L  G N+FIC +P HC   GMK+ IN
Sbjct: 63  VLVDQTGYDKCKTPEGSKVFRTGSDQIELVKGDNYFICNLPGHCQS-GMKIYIN 115

Source: Medicago sativa subsp. x varia

Species: Medicago sativa

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	124
TAIR|locus:2056700	129	ARPN "plantacyanin" [Arabidops	0.967	0.930	0.409	2e-24
TAIR|locus:2151069	187	AT5G26330 [Arabidopsis thalian	0.927	0.614	0.401	1.6e-17
TAIR|locus:2030888	140	ENODL22 "early nodulin-like pr	0.75	0.664	0.443	3.2e-17
TAIR|locus:2081952	187	AT3G60270 [Arabidopsis thalian	0.766	0.508	0.42	4.7e-16
TAIR|locus:2062525	261	UCC1 "uclacyanin 1" [Arabidops	0.774	0.367	0.41	2e-15
TAIR|locus:2052866	200	AT2G31050 [Arabidopsis thalian	0.975	0.605	0.338	2.6e-15
TAIR|locus:4010713753	106	AT3G17675 [Arabidopsis thalian	0.733	0.858	0.431	2.6e-15
TAIR|locus:2042426	202	UCC2 "uclacyanin 2" [Arabidops	0.685	0.420	0.444	6.9e-15
TAIR|locus:504956334	192	AT5G07475 [Arabidopsis thalian	0.790	0.510	0.367	1e-13
TAIR|locus:2081957	222	UCC3 "uclacyanin 3" [Arabidops	0.766	0.427	0.41	1.6e-13

TAIR|locus:2056700 ARPN "plantacyanin" [Arabidopsis thaliana (taxid:3702)]

 Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
 Identities = 52/127 (40%), Positives = 75/127 (59%)

Query:     1 MAQARGSA------IIAXXXXXXXXMHCNIGSATTFKVGDDGGWVFGVQNWPEGKTFKCG 54
             MA+ RGSA      I+         +  +   A T+ VGD G W F    WP+GK F+ G
Sbjct:     1 MAKGRGSASWSARAIVTLMAVSVLLLQADYVQAATYTVGDSGIWTFNAVGWPKGKHFRAG 60

Query:    55 DILEFNYDPQRHNVIIVDQEGHDSCKPASDAKKFQTGKDQIVLNHGKNFFICGVPTHCSD 114
             D+L FNY+P+ HNV+ VD   +++CK  + AK + +GKD+I L+ G+NFFIC  P HC +
Sbjct:    61 DVLVFNYNPRMHNVVKVDSGSYNNCKTPTGAKPYTSGKDRITLSKGQNFFICNFPNHC-E 119

Query:   115 HGMKLEI 121
               MK+ +
Sbjct:   120 SDMKIAV 126

GO:0005507 "copper ion binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0009856 "pollination" evidence=IMP

GO:0048196 "plant extracellular matrix" evidence=TAS

GO:0048653 "anther development" evidence=IMP

GO:0048046 "apoplast" evidence=IDA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0009845 "seed germination" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009933 "meristem structural organization" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010182 "sugar mediated signaling pathway" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0019915 "lipid storage" evidence=RCA

GO:0050826 "response to freezing" evidence=RCA

TAIR|locus:2151069 AT5G26330 [Arabidopsis thaliana (taxid:3702)]

 Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
 Identities = 49/122 (40%), Positives = 62/122 (50%)

Query:     7 SAIIAXXXXXXXXMHCNIGSATTFKVGDDGGW--VFGVQN--WPEGKTFKCGDILEFNYD 62
             +AII         M   +  A  +KVGD  GW  +  V    W   KTF  GD + F Y+
Sbjct:     2 AAIIVAALACIVVM-LRLSEAAVYKVGDSAGWTTIANVDYKLWASTKTFHIGDTVLFEYN 60

Query:    63 PQRHNVIIVDQEGHDSCKPASDAKKFQTGKDQIVL-NHGKNFFICGVPTHCSDHGMKLEI 121
             PQ HNV+ V    + SC  +     F TG D I L NHG +FF CGVP HC   G KL++
Sbjct:    61 PQFHNVMRVTHPMYRSCNTSKPISTFTTGNDSITLTNHGHHFFFCGVPGHCLA-GQKLDL 119

Query:   122 NV 123
             +V
Sbjct:   120 HV 121

GO:0005507 "copper ion binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0031225 "anchored to membrane" evidence=TAS

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0042546 "cell wall biogenesis" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2030888 ENODL22 "early nodulin-like protein 22" [Arabidopsis thaliana (taxid:3702)]

 Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
 Identities = 43/97 (44%), Positives = 62/97 (63%)

Query:    28 TTFKVGDDGGW--VFGVQNWPEGKTFKCGDILEFNYDPQRHNVIIVDQEGHDSCKPASDA 85
             TT+ VG D GW  V  +  W  GKTF  GDILEF YD QR N+I+V++ G+++C+    A
Sbjct:    39 TTYIVGGDDGWDPVVPMDTWARGKTFYAGDILEFKYDYQRFNLIVVNRTGYETCEANVGA 98

Query:    86 KKFQTGKDQIVLNHGKNFFI-CGVPTHCSDHGMKLEI 121
              ++ +G D+I LN+G N+FI    P  C+  G+K+ I
Sbjct:    99 IEYSSGDDKIQLNYGYNYFIGTYTPEDCTT-GLKMAI 134

GO:0005507 "copper ion binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

TAIR|locus:2081952 AT3G60270 [Arabidopsis thaliana (taxid:3702)]

 Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
 Identities = 42/100 (42%), Positives = 58/100 (58%)

Query:    27 ATTFKVGDDGGWVFGVQ--NWPEGKTFKCGDILEFNYDPQRHNVIIVDQEGHDSCKPASD 84
             A TF+VGD+ GW  GV+  +W   KTF+ GD LEF Y P  H+V +V++  +D C+ +  
Sbjct:    23 AVTFQVGDNDGWTIGVEYTSWVSEKTFRVGDTLEFKYGPS-HSVAVVNKADYDGCETSRP 81

Query:    85 AKKFQTGKDQIVLNH-GKNFFICGVPTHCSDHGMKLEINV 123
              + F  G  +I L   G   F+C  P HCS  GMKL + V
Sbjct:    82 TQSFSDGDTKIDLTKVGAIHFLCLTPGHCS-LGMKLAVQV 120

GO:0005507 "copper ion binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0031225 "anchored to membrane" evidence=TAS

TAIR|locus:2062525 UCC1 "uclacyanin 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 41/100 (41%), Positives = 54/100 (54%)

Query:    27 ATTFKVGDDGGWVFG--VQNWPEGKTFKCGDILEFNYDPQRHNVIIVDQEGHDSCKPASD 84
             AT   +G   GW  G  ++ W  G+TF  GD L F+Y    H+V+ V +   DSC+    
Sbjct:    23 ATDHTIGGPSGWTVGASLRTWAAGQTFAVGDNLVFSYPAAFHDVVEVTKPEFDSCQAVKP 82

Query:    85 AKKFQTGKDQIVLNH-GKNFFICGVPTHCSDHGMKLEINV 123
                F  G   + L   GK +FICG+P HCS  GMKLE+NV
Sbjct:    83 LITFANGNSLVPLTTPGKRYFICGMPGHCSQ-GMKLEVNV 121

GO:0005507 "copper ion binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0031225 "anchored to membrane" evidence=TAS

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

TAIR|locus:2052866 AT2G31050 [Arabidopsis thaliana (taxid:3702)]

 Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 43/127 (33%), Positives = 63/127 (49%)

Query:     1 MAQARGSAIIAXXXXXXXXMHCNIGSATTFKVGDDGGW-VFGV--QNWPEGKTFKCGDIL 57
             MA  + +A              ++G  T  KVGD  GW +  V  + W    TF+ GD L
Sbjct:     1 MALIKSNAFFTSLLILVALFGISVGG-TVHKVGDSDGWTIMSVNYETWASTITFQVGDSL 59

Query:    58 EFNYDPQRHNVIIVDQEGHDSCKPASDAKKFQTGKDQIVLNH-GKNFFICGVPTHCSDHG 116
              F Y+   H+V  V    ++ C+P+    +++TG D ++L   G   FICG P HC D G
Sbjct:    60 VFKYNKDFHDVTEVTHNDYEMCEPSKPLARYETGSDIVILTKPGLQHFICGFPGHC-DMG 118

Query:   117 MKLEINV 123
              KL+I+V
Sbjct:   119 QKLQIHV 125

GO:0005507 "copper ion binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0031225 "anchored to membrane" evidence=TAS

TAIR|locus:4010713753 AT3G17675 [Arabidopsis thaliana (taxid:3702)]

 Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 41/95 (43%), Positives = 54/95 (56%)

Query:    32 VGDDGGW-VF-GVQNWPEGKTFKCGDILEFNYDPQRHNVIIVDQEGHDSCKPASDAKKFQ 89
             VGD  GW +F    NW +G+ F  GD+L FNY   +HNV+ V+   +  C   +    F 
Sbjct:    11 VGDSNGWELFTNYTNWTQGREFHVGDVLVFNYKSDQHNVMQVNSTAYTDCGLDNYTTLFT 70

Query:    90 TGKDQIVLNH-GKNFFICGVPTHCSDHGMKLEINV 123
              G D I+L+  GK +FICGV  HC + G KL INV
Sbjct:    71 KGNDSIILSEVGKLWFICGVDDHCVN-GQKLSINV 104

GO:0005507 "copper ion binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

TAIR|locus:2042426 UCC2 "uclacyanin 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
 Identities = 40/90 (44%), Positives = 51/90 (56%)

Query:    38 WVFGVQ--NWPEGKTFKCGDILEFNYDPQRHNVIIVDQEGHDSCKPASDAKKFQTGKDQI 95
             W  GV    W  GKTF+ GDILEF Y    H V +VD+ G+D C  +S  +    G  +I
Sbjct:    36 WTTGVDYSGWATGKTFRVGDILEFKYGSS-HTVDVVDKAGYDGCDASSSTENHSDGDTKI 94

Query:    96 VLNH-GKNFFICGVPTHC-SDHGMKLEINV 123
              L   G N+FIC  P HC ++ GMKL +NV
Sbjct:    95 DLKTVGINYFICSTPGHCRTNGGMKLAVNV 124

GO:0005507 "copper ion binding" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0031225 "anchored to membrane" evidence=TAS

GO:0046658 "anchored to plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0009611 "response to wounding" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:504956334 AT5G07475 [Arabidopsis thaliana (taxid:3702)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 39/106 (36%), Positives = 55/106 (51%)

Query:    22 CNIGSATTFKVGDDGGWVFG--VQNWPEGKTFKCGDILEFNYDPQRHNVIIVDQEGHDSC 79
             CN   ATT+ VGD  GW     +++W  GK F  GD+L F Y    H+V  V ++ + +C
Sbjct:    25 CN---ATTYFVGDSSGWDISSDLESWTSGKRFSPGDVLMFQYS-STHSVYEVAKDNYQNC 80

Query:    80 KPASDAKKFQTGKDQIVLNH-GKNFFICGVPTHCSDHGMKLEINVE 124
                   + F  G   + L+  G  FF+CG   HC   GM+L +NVE
Sbjct:    81 NTTDAIRTFTNGNTTVALSKPGNRFFVCGNRLHCFA-GMRLLVNVE 125

GO:0005507 "copper ion binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0031225 "anchored to membrane" evidence=TAS

TAIR|locus:2081957 UCC3 "uclacyanin 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
 Identities = 41/100 (41%), Positives = 54/100 (54%)

Query:    27 ATTFKVGDDGGWVFGVQN--WPEGKTFKCGDILEFNYDPQRHNVIIVDQEGHDSCKPASD 84
             A TFKVGD  GW   +    W  GKTF+ GD LEF Y    H+V +VD+ G+D+C  +  
Sbjct:    21 AATFKVGDISGWTSNLDYTVWLTGKTFRVGDTLEFVYGLS-HSVSVVDKAGYDNCDSSGA 79

Query:    85 AKKFQTGKDQIVLNH-GKNFFICGVPTHCSDHGMKLEINV 123
              + F  G  +I L   G   F+C    HC + GMKL + V
Sbjct:    80 TQNFADGDTKIDLTTVGTMHFLCPTFGHCKN-GMKLAVPV 118

GO:0005507 "copper ion binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0031225 "anchored to membrane" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8LG89	BABL_ARATH	No assigned EC number	0.4330	0.9677	0.9302	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_I1252 hypothetical protein (125 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	124
pfam02298	84	pfam02298, Cu_bind_like, Plastocyanin-like domain	8e-26
PLN03148	167	PLN03148, PLN03148, Blue copper-like protein; Prov	7e-14

>gnl|CDD|216965 pfam02298, Cu_bind_like, Plastocyanin-like domain

 Score = 92.4 bits (230), Expect = 8e-26
 Identities = 33/81 (40%), Positives = 45/81 (55%), Gaps = 5/81 (6%)

Query: 38  WVFGV----QNWPEGKTFKCGDILEFNYDPQRHNVIIVDQEGHDSCKPASDAKKFQTGKD 93
           W   +      W  GKTF+ GD L FNYD   HNV+ V +  ++SC  +   + + TG D
Sbjct: 1   WTVPLNADYTLWASGKTFRVGDTLVFNYDKGFHNVVEVTKADYESCNTSKPIRTYTTGND 60

Query: 94  QIVLN-HGKNFFICGVPTHCS 113
            I L   G+++FICGVP HC 
Sbjct: 61  IIPLTKPGQHYFICGVPGHCK 81

This family represents a domain found in flowering plants related to the copper binding protein plastocyanin. Some members of this family may not bind copper due to the lack of key residues. Length = 84

>gnl|CDD|178693 PLN03148, PLN03148, Blue copper-like protein; Provisional

 Score = 63.7 bits (155), Expect = 7e-14
 Identities = 39/101 (38%), Positives = 55/101 (54%), Gaps = 5/101 (4%)

Query: 26  SATTFKVGDDGGWVFGVQ--NWPEGKTFKCGDILEFNYDPQRHNVIIVDQEGHDSCKPAS 83
           +AT   VG + GW  G+    W   +TF  GD++ F Y   ++NV  V+Q G+D+C    
Sbjct: 19  TATDHIVGANKGWNPGINYTLWANNQTFYVGDLISFRYQKTQYNVFEVNQTGYDNCTTEG 78

Query: 84  DAKKFQTGKDQIVLNHGKN-FFICGVPTHCSDHGMKLEINV 123
            A  + +GKD I LN  K  +FICG    C + GMK+ I V
Sbjct: 79  AAGNWTSGKDFIPLNKAKRYYFICG-NGQCFN-GMKVTILV 117

Length = 167

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	124
PLN03148	167	Blue copper-like protein; Provisional	100.0
PF02298	85	Cu_bind_like: Plastocyanin-like domain; InterPro:	99.97
PRK02710	119	plastocyanin; Provisional	98.82
PF00127	99	Copper-bind: Copper binding proteins, plastocyanin	98.63
TIGR03102	115	halo_cynanin halocyanin domain. Halocyanins are bl	98.31
TIGR02656	99	cyanin_plasto plastocyanin. Members of this family	98.3
COG3794	128	PetE Plastocyanin [Energy production and conversio	98.27
TIGR02375	116	pseudoazurin pseudoazurin. Pseudoazurin, also call	98.0
TIGR03095	148	rusti_cyanin rusticyanin. Rusticyanin is a blue co	97.54
TIGR02657	83	amicyanin amicyanin. Members of this family are am	97.46
PF06525	196	SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Memb	97.26
KOG3858	233	consensus Ephrin, ligand for Eph receptor tyrosine	96.09
TIGR03094	195	sulfo_cyanin sulfocyanin. Members of this family a	96.09
PF00812	145	Ephrin: Ephrin; InterPro: IPR001799 Ephrins are a	95.94
COG4454	158	Uncharacterized copper-binding protein [Inorganic	94.88
TIGR03096	135	nitroso_cyanin nitrosocyanin. Nitrosocyanin, as de	93.95
PF13473	104	Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D	92.33
PLN02604	566	oxidoreductase	90.83
PLN02354	552	copper ion binding / oxidoreductase	90.23
TIGR02695	125	azurin azurin. Azurin is a blue copper-binding pro	89.25
TIGR02376	311	Cu_nitrite_red nitrite reductase, copper-containin	87.18
PRK02888	635	nitrous-oxide reductase; Validated	86.18
PF07172	95	GRP: Glycine rich protein family; InterPro: IPR010	84.41
PF07732	117	Cu-oxidase_3: Multicopper oxidase; InterPro: IPR01	82.35
PRK10378	375	inactive ferrous ion transporter periplasmic prote	81.38
TIGR02866	201	CoxB cytochrome c oxidase, subunit II. Cytochrome	80.07

>PLN03148 Blue copper-like protein; Provisional

Probab=100.00  E-value=5.6e-41  Score=250.00  Aligned_cols=111  Identities=34%  Similarity=0.660  Sum_probs=100.6

Q ss_pred             HHHHHHHHhhcccceeEEEEecCCCCCCc--cccCCCCCCeeeeCCEEEEEeCCCCCeEEEECcCCCCCCCCCCCCcccc
Q 048131           12 VVTVLLLLMHCNIGSATTFKVGDDGGWVF--GVQNWPEGKTFKCGDILEFNYDPQRHNVIIVDQEGHDSCKPASDAKKFQ   89 (124)
Q Consensus        12 ~~~~~~~~~~~~~a~a~~~~VG~~~gW~~--~~~~Wa~~~~f~vGD~L~F~y~~~~h~V~~V~~~~y~~C~~~~~~~~~~   89 (124)
                      +|++++++++...+++++|+|||+.||+.  +|++|+++|+|++||+|+|+|+++.|+|+||++++|++|+.++|+..++
T Consensus         5 ~l~~~~~~~~~~~~~a~~~~VGd~~GW~~~~~Y~~WA~~k~F~VGD~LvF~Y~~~~hnV~~V~~~~Y~~C~~~~pi~~~t   84 (167)
T PLN03148          5 LLFCFFALFSASATTATDHIVGANKGWNPGINYTLWANNQTFYVGDLISFRYQKTQYNVFEVNQTGYDNCTTEGAAGNWT   84 (167)
T ss_pred             HHHHHHHHHhhhhccceEEEeCCCCCcCCCCChhHhhcCCCCccCCEEEEEecCCCceEEEEChHHcCcccCCCCcceec
Confidence            33444444556678899999999999975  5799999999999999999999999999999999999999999999999


Q ss_pred             cCCcEEEeC-CcceEEEeCCCCCccCCCcEEEEEeC
Q 048131           90 TGKDQIVLN-HGKNFFICGVPTHCSDHGMKLEINVE  124 (124)
Q Consensus        90 ~G~~~v~l~-~G~~yfic~~~~hC~~~GmKl~I~V~  124 (124)
                      +|++.|+|+ +|+|||||+ ++||+ +||||.|+|+
T Consensus        85 sG~d~v~L~~~G~~YFIcg-~ghC~-~GmKl~I~V~  118 (167)
T PLN03148         85 SGKDFIPLNKAKRYYFICG-NGQCF-NGMKVTILVH  118 (167)
T ss_pred             CCCcEEEecCCccEEEEcC-CCccc-cCCEEEEEEc
Confidence            999999999 899999999 69999 9999999985

>PF02298 Cu_bind_like: Plastocyanin-like domain; InterPro: IPR003245 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]

Probab=99.97  E-value=2.7e-32  Score=183.49  Aligned_cols=76  Identities=42%  Similarity=0.925  Sum_probs=62.8

Q ss_pred             cccCCCCCCeeeeCCEEEEEeCCCCCeEEEECcCCCCCCCCCCCCcccccCCcEEEeC-CcceEEEeCCCCCccCCCc
Q 048131           41 GVQNWPEGKTFKCGDILEFNYDPQRHNVIIVDQEGHDSCKPASDAKKFQTGKDQIVLN-HGKNFFICGVPTHCSDHGM  117 (124)
Q Consensus        41 ~~~~Wa~~~~f~vGD~L~F~y~~~~h~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~l~-~G~~yfic~~~~hC~~~Gm  117 (124)
                      .|++||++++|++||+|+|+|+++.|+|+||++++|++|+.++|+..+.+|++.|+|+ ||++||||++++||+ +||
T Consensus         9 ~Y~~Wa~~~~F~vGD~LvF~y~~~~h~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~L~~~G~~YFic~~~~HC~-~Gq   85 (85)
T PF02298_consen    9 NYTDWASGKTFRVGDTLVFNYDSGQHSVVEVSKADYDSCNSSNPISTYSTGNDTVTLTKPGPHYFICGVPGHCQ-KGQ   85 (85)
T ss_dssp             HHHHHHCTS-BETTEEEEEE--TTTB-EEEESHHHHHHT--STTSEEE-SSEEEEEE-SSEEEEEE--STTTTT-TT-
T ss_pred             chhHhhcCCcEeCCCEEEEEecCCCCeEEecChhhCccCCCCCceecccCCCEEEEeCCCcCeEEEeCCCCccc-ccC
Confidence            3589999999999999999999999999999999999999999999999999999999 899999999999999 998

The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved. This domain is found in a variety of plant cyanins and pollern allergen. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 3.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1JER_A 1WS7_A 1WS8_D 1F56_B 1X9R_B 1X9U_A 2CBP_A.

>PRK02710 plastocyanin; Provisional

Probab=98.82  E-value=1e-07  Score=67.14  Aligned_cols=93  Identities=26%  Similarity=0.391  Sum_probs=58.8

Q ss_pred             hhcccceeEEE--EecCCCCC-CccccCCCCCCeeeeCCEEEEEeC-CCCCeEEEECcCCCCCCCCCCCCcccccCC-cE
Q 048131           20 MHCNIGSATTF--KVGDDGGW-VFGVQNWPEGKTFKCGDILEFNYD-PQRHNVIIVDQEGHDSCKPASDAKKFQTGK-DQ   94 (124)
Q Consensus        20 ~~~~~a~a~~~--~VG~~~gW-~~~~~~Wa~~~~f~vGD~L~F~y~-~~~h~V~~V~~~~y~~C~~~~~~~~~~~G~-~~   94 (124)
                      +.+..+.+.++  .+|.++|+ .+.+    +..++++||+|.|..+ ...|++..-..   +....++  .....|. .+
T Consensus        21 ~~~~~a~a~~~~V~~~~~~~~~~F~P----~~i~v~~Gd~V~~~N~~~~~H~v~~~~~---~~~~~~~--~~~~pg~t~~   91 (119)
T PRK02710         21 LGVSSASAETVEVKMGSDAGMLAFEP----STLTIKAGDTVKWVNNKLAPHNAVFDGA---KELSHKD--LAFAPGESWE   91 (119)
T ss_pred             hcccccccceEEEEEccCCCeeEEeC----CEEEEcCCCEEEEEECCCCCceEEecCC---ccccccc--cccCCCCEEE
Confidence            33444455554  46655444 3333    3578999999999874 45799864211   1111111  1123343 47


Q ss_pred             EEeC-CcceEEEeCCCCCccCCCcEEEEEeC
Q 048131           95 IVLN-HGKNFFICGVPTHCSDHGMKLEINVE  124 (124)
Q Consensus        95 v~l~-~G~~yfic~~~~hC~~~GmKl~I~V~  124 (124)
                      ++++ ||.|-|+|.  .|=+ .||+..|+|+
T Consensus        92 ~tF~~~G~y~y~C~--~H~~-~gM~G~I~V~  119 (119)
T PRK02710         92 ETFSEAGTYTYYCE--PHRG-AGMVGKITVE  119 (119)
T ss_pred             EEecCCEEEEEEcC--CCcc-CCcEEEEEEC
Confidence            7787 899999999  6988 9999999996

>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]

Probab=98.63  E-value=7.7e-08  Score=65.46  Aligned_cols=74  Identities=27%  Similarity=0.406  Sum_probs=52.0

Q ss_pred             CCeeeeCCEEEEEe-CCCCCeEEEECcCC--CCCCCCCCC---CcccccCCc-EEEeC-CcceEEEeCCCCCccCCCcEE
Q 048131           48 GKTFKCGDILEFNY-DPQRHNVIIVDQEG--HDSCKPASD---AKKFQTGKD-QIVLN-HGKNFFICGVPTHCSDHGMKL  119 (124)
Q Consensus        48 ~~~f~vGD~L~F~y-~~~~h~V~~V~~~~--y~~C~~~~~---~~~~~~G~~-~v~l~-~G~~yfic~~~~hC~~~GmKl  119 (124)
                      ..++++||++.|.. +...|++...+...  -.......+   ......|.+ .++++ +|.|.|+|. | |.. .||+.
T Consensus        18 ~i~V~~G~tV~~~n~~~~~Hnv~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~~~G~y~y~C~-P-H~~-~GM~G   94 (99)
T PF00127_consen   18 EITVKAGDTVTFVNNDSMPHNVVFVADGMPAGADSDYVPPGDSSPLLAPGETYSVTFTKPGTYEYYCT-P-HYE-AGMVG   94 (99)
T ss_dssp             EEEEETTEEEEEEEESSSSBEEEEETTSSHTTGGHCHHSTTCEEEEBSTTEEEEEEEESSEEEEEEET-T-TGG-TTSEE
T ss_pred             EEEECCCCEEEEEECCCCCceEEEecccccccccccccCccccceecCCCCEEEEEeCCCeEEEEEcC-C-Ccc-cCCEE
Confidence            47899999999999 46789999985210  011111111   112334443 67777 899999999 8 999 99999


Q ss_pred             EEEeC
Q 048131          120 EINVE  124 (124)
Q Consensus       120 ~I~V~  124 (124)
                      .|.|+
T Consensus        95 ~i~V~   99 (99)
T PF00127_consen   95 TIIVE   99 (99)
T ss_dssp             EEEEE
T ss_pred             EEEEC
Confidence            99996

The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....

>TIGR03102 halo_cynanin halocyanin domain

Probab=98.31  E-value=8.7e-06  Score=57.58  Aligned_cols=88  Identities=24%  Similarity=0.408  Sum_probs=60.3

Q ss_pred             ceeEEEEec--CC-CCCCccccCCCCCCeeeeCCEEEEEeCC--CCCeEEEECcCCCCCCCCCCCCcccccC-CcEEEeC
Q 048131           25 GSATTFKVG--DD-GGWVFGVQNWPEGKTFKCGDILEFNYDP--QRHNVIIVDQEGHDSCKPASDAKKFQTG-KDQIVLN   98 (124)
Q Consensus        25 a~a~~~~VG--~~-~gW~~~~~~Wa~~~~f~vGD~L~F~y~~--~~h~V~~V~~~~y~~C~~~~~~~~~~~G-~~~v~l~   98 (124)
                      ++..+..||  ++ .+..+.|.    ..++++||+|.|.++.  ..|+|.--+...|+.    .. .....| ..+++++
T Consensus        21 ~~~~~v~~G~~~~~g~~~F~P~----~ltV~~GdTVtw~~~~d~~~HnV~s~~~~~f~s----~~-~~~~~G~t~s~Tf~   91 (115)
T TIGR03102        21 QDEVTVDVGAEANGGGFAFDPP----AIRVDPGTTVVWEWTGEGGGHNVVSDGDGDLDE----SE-RVSEEGTTYEHTFE   91 (115)
T ss_pred             CceEEEEecccCCCCceeEeCC----EEEECCCCEEEEEECCCCCCEEEEECCCCCccc----cc-cccCCCCEEEEEec
Confidence            355677888  32 23555543    3799999999999863  579998543344441    11 112234 3478888


Q ss_pred             -CcceEEEeCCCCCccCCCcEEEEEeC
Q 048131           99 -HGKNFFICGVPTHCSDHGMKLEINVE  124 (124)
Q Consensus        99 -~G~~yfic~~~~hC~~~GmKl~I~V~  124 (124)
                       ||.|-|+|..  |=. .|||-.|.|+
T Consensus        92 ~~G~Y~Y~C~p--H~~-~gM~G~I~V~  115 (115)
T TIGR03102        92 EPGIYLYVCVP--HEA-LGMKGAVVVE  115 (115)
T ss_pred             CCcEEEEEccC--CCC-CCCEEEEEEC
Confidence             9999999994  766 7999999996

Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.

>TIGR02656 cyanin_plasto plastocyanin

Probab=98.30  E-value=5.3e-06  Score=56.47  Aligned_cols=87  Identities=24%  Similarity=0.394  Sum_probs=55.5

Q ss_pred             EEecC-CCCCCccccCCCCCCeeeeCCEEEEEeCC-CCCeEEEECcCCCCC------CCCCCCCcccccCCc-EEEeC-C
Q 048131           30 FKVGD-DGGWVFGVQNWPEGKTFKCGDILEFNYDP-QRHNVIIVDQEGHDS------CKPASDAKKFQTGKD-QIVLN-H   99 (124)
Q Consensus        30 ~~VG~-~~gW~~~~~~Wa~~~~f~vGD~L~F~y~~-~~h~V~~V~~~~y~~------C~~~~~~~~~~~G~~-~v~l~-~   99 (124)
                      ..+|. +.+-.+.|+    ..++++||++.|..+. ..|++...+.. ...      ............|.+ +++++ |
T Consensus         3 v~~g~~~g~~~F~P~----~i~v~~G~~V~~~N~~~~~H~~~~~~~~-~~~~~~~~~~~~~~~~~~~~pG~t~~~tF~~~   77 (99)
T TIGR02656         3 VKMGADKGALVFEPA----KISIAAGDTVEWVNNKGGPHNVVFDEDA-VPAGVKELAKSLSHKDLLNSPGESYEVTFSTP   77 (99)
T ss_pred             EEEecCCCceeEeCC----EEEECCCCEEEEEECCCCCceEEECCCC-CccchhhhcccccccccccCCCCEEEEEeCCC
Confidence            45564 333444443    4789999999999753 57999864321 000      011000011233433 67777 8


Q ss_pred             cceEEEeCCCCCccCCCcEEEEEeC
Q 048131          100 GKNFFICGVPTHCSDHGMKLEINVE  124 (124)
Q Consensus       100 G~~yfic~~~~hC~~~GmKl~I~V~  124 (124)
                      |+|-|+|.  +|++ .||+..|.|+
T Consensus        78 G~y~y~C~--~H~~-aGM~G~I~V~   99 (99)
T TIGR02656        78 GTYTFYCE--PHRG-AGMVGKITVE   99 (99)
T ss_pred             EEEEEEcC--Cccc-cCCEEEEEEC
Confidence            99999999  7999 9999999986

Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.

>COG3794 PetE Plastocyanin [Energy production and conversion]

Probab=98.27  E-value=1.4e-05  Score=57.66  Aligned_cols=78  Identities=28%  Similarity=0.371  Sum_probs=55.6

Q ss_pred             CCCCCCccccCCCCCCeeeeCCEEEEEeCCC-CCeEEEECcCCCCCCCCCCCCcccccC---CcEEEeC-CcceEEEeCC
Q 048131           34 DDGGWVFGVQNWPEGKTFKCGDILEFNYDPQ-RHNVIIVDQEGHDSCKPASDAKKFQTG---KDQIVLN-HGKNFFICGV  108 (124)
Q Consensus        34 ~~~gW~~~~~~Wa~~~~f~vGD~L~F~y~~~-~h~V~~V~~~~y~~C~~~~~~~~~~~G---~~~v~l~-~G~~yfic~~  108 (124)
                      +...-.+.|+    ..++++||++.|.+..+ .|+|.-....+     + .....+..+   ..+.+++ ||.|.|+|.-
T Consensus        45 ~~~~~vF~PA----~v~v~pGDTVtw~~~d~~~Hnv~~~~~~~-----~-~g~~~~~~~~~~s~~~Tfe~~G~Y~Y~C~P  114 (128)
T COG3794          45 DIGAMVFEPA----EVTVKPGDTVTWVNTDSVGHNVTAVGGMD-----P-EGSGTLKAGINESFTHTFETPGEYTYYCTP  114 (128)
T ss_pred             cCcceeEcCc----EEEECCCCEEEEEECCCCCceEEEeCCCC-----c-ccccccccCCCcceEEEecccceEEEEecc
Confidence            3344555554    47999999999999987 89999874441     1 111122222   2367777 9999999994


Q ss_pred             CCCccCCCcEEEEEeC
Q 048131          109 PTHCSDHGMKLEINVE  124 (124)
Q Consensus       109 ~~hC~~~GmKl~I~V~  124 (124)
                        |=. .|||-.|.|+
T Consensus       115 --H~~-~gM~G~IvV~  127 (128)
T COG3794         115 --HPG-MGMKGKIVVG  127 (128)
T ss_pred             --CCC-CCcEEEEEeC
Confidence              878 9999999985

>TIGR02375 pseudoazurin pseudoazurin

Probab=98.00  E-value=4.9e-05  Score=53.80  Aligned_cols=71  Identities=21%  Similarity=0.160  Sum_probs=49.4

Q ss_pred             CCeeeeCCEEEEEeCCCCCeEEEECcCCCCCCCCCCCCcccccCCcEEEeC-CcceEEEeCCCCCccCCCcEEEEEeC
Q 048131           48 GKTFKCGDILEFNYDPQRHNVIIVDQEGHDSCKPASDAKKFQTGKDQIVLN-HGKNFFICGVPTHCSDHGMKLEINVE  124 (124)
Q Consensus        48 ~~~f~vGD~L~F~y~~~~h~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~l~-~G~~yfic~~~~hC~~~GmKl~I~V~  124 (124)
                      ..++++||+|.|.+....|+|.......-+   ..++...-.+..-+++++ +|.|-|.|.  .|=. .||+..|+|.
T Consensus        16 ~v~V~~GdTV~f~n~d~~Hnv~~~~~~~p~---g~~~~~s~~g~~~~~tF~~~G~Y~Y~C~--pH~~-~GM~G~V~Vg   87 (116)
T TIGR02375        16 YIRAAPGDTVTFVPTDKGHNVETIKGMIPE---GAEAFKSKINEEYTVTVTEEGVYGVKCT--PHYG-MGMVALIQVG   87 (116)
T ss_pred             EEEECCCCEEEEEECCCCeeEEEccCCCcC---CcccccCCCCCEEEEEeCCCEEEEEEcC--CCcc-CCCEEEEEEC
Confidence            478999999999998778998864321110   011111111223478888 999999999  5999 9999999983

Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.

>TIGR03095 rusti_cyanin rusticyanin

Probab=97.54  E-value=0.00048  Score=50.47  Aligned_cols=72  Identities=19%  Similarity=0.253  Sum_probs=48.4

Q ss_pred             CeeeeCCEEEEEeCCC----CCeEEEECcC-CCC------------CCCCCCCCcccccC-----CcEEEeC-CcceEEE
Q 048131           49 KTFKCGDILEFNYDPQ----RHNVIIVDQE-GHD------------SCKPASDAKKFQTG-----KDQIVLN-HGKNFFI  105 (124)
Q Consensus        49 ~~f~vGD~L~F~y~~~----~h~V~~V~~~-~y~------------~C~~~~~~~~~~~G-----~~~v~l~-~G~~yfi  105 (124)
                      .+++.||++.|...+.    .|.....+.. .+.            .|....   ...+|     .-+++++ +|+|||.
T Consensus        54 I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~~~~~~i~p---~~~~g~~~~~~~tf~f~~aGtywyh  130 (148)
T TIGR03095        54 IVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGLGFVAGTGFLP---PPKSGKFGYTDFTYHFSTAGTYWYL  130 (148)
T ss_pred             EEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCCCccccCcccC---CCCCCccceeEEEEECCCCeEEEEE
Confidence            4678999999988753    5777765321 111            111110   11122     2366667 8999999


Q ss_pred             eCCCCCccCCCcEEEEEeC
Q 048131          106 CGVPTHCSDHGMKLEINVE  124 (124)
Q Consensus       106 c~~~~hC~~~GmKl~I~V~  124 (124)
                      |..++|=+ .||.-.|.|+
T Consensus       131 C~~pgH~~-~GM~G~iiV~  148 (148)
T TIGR03095       131 CTYPGHAE-NGMYGKIVVK  148 (148)
T ss_pred             cCChhHHH-CCCEEEEEEC
Confidence            99999998 9999999986

Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).

>TIGR02657 amicyanin amicyanin

Probab=97.46  E-value=0.0012  Score=43.44  Aligned_cols=69  Identities=17%  Similarity=0.177  Sum_probs=46.2

Q ss_pred             CCeeeeCCEEEEEeCCC-CCeEEEECcCCCCCCCCCCCCcccccCC-cEEEeC-CcceEEEeCCCCCccCCCcEEEEEeC
Q 048131           48 GKTFKCGDILEFNYDPQ-RHNVIIVDQEGHDSCKPASDAKKFQTGK-DQIVLN-HGKNFFICGVPTHCSDHGMKLEINVE  124 (124)
Q Consensus        48 ~~~f~vGD~L~F~y~~~-~h~V~~V~~~~y~~C~~~~~~~~~~~G~-~~v~l~-~G~~yfic~~~~hC~~~GmKl~I~V~  124 (124)
                      ..++++||+|.|..+.. .|+|...+..+ ..=+...+  ....|. .+++++ ||+|-|.|...     ..||-.|.||
T Consensus        12 ~i~v~~GdtVt~~N~d~~~Hnv~~~~g~~-~~~~~~~~--~~~~g~~~~~tf~~~G~y~y~C~~H-----p~M~G~v~V~   83 (83)
T TIGR02657        12 ELHVKVGDTVTWINREAMPHNVHFVAGVL-GEAALKGP--MMKKEQAYSLTFTEAGTYDYHCTPH-----PFMRGKVVVE   83 (83)
T ss_pred             EEEECCCCEEEEEECCCCCccEEecCCCC-cccccccc--ccCCCCEEEEECCCCEEEEEEcCCC-----CCCeEEEEEC
Confidence            46889999999998843 79998653221 11001111  123343 378888 99999999973     5699999986

Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.

>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus

Probab=97.26  E-value=0.0015  Score=50.18  Aligned_cols=72  Identities=24%  Similarity=0.418  Sum_probs=45.8

Q ss_pred             eeCCEEEEEeCCC---CCeEEEE-CcCCCCCCCCC---CCCc--------c-c----ccCCc-EE---EeCCcceEEEeC
Q 048131           52 KCGDILEFNYDPQ---RHNVIIV-DQEGHDSCKPA---SDAK--------K-F----QTGKD-QI---VLNHGKNFFICG  107 (124)
Q Consensus        52 ~vGD~L~F~y~~~---~h~V~~V-~~~~y~~C~~~---~~~~--------~-~----~~G~~-~v---~l~~G~~yfic~  107 (124)
                      -.|-++.|++.+.   .|++..| +...+.++..-   +.+.        . .    ..|.. ..   .|++|.||++|+
T Consensus        91 PAGw~V~i~f~N~~~l~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~~~~~~~l~aG~YwlvC~  170 (196)
T PF06525_consen   91 PAGWNVQITFTNQESLPHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSASGVYNDLPAGYYWLVCG  170 (196)
T ss_pred             cCCCEEEEEEEcCCCCCeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCceeeEEEccCCCceEEEEcc
Confidence            4688888888643   6999998 43333333211   1110        0 0    12322 22   233799999999


Q ss_pred             CCCCccCCCcEEEEEeC
Q 048131          108 VPTHCSDHGMKLEINVE  124 (124)
Q Consensus       108 ~~~hC~~~GmKl~I~V~  124 (124)
                      .+||=+ +||-..+.|.
T Consensus       171 ipGHA~-sGMw~~LiVs  186 (196)
T PF06525_consen  171 IPGHAE-SGMWGVLIVS  186 (196)
T ss_pred             CCChhh-cCCEEEEEEe
Confidence            999999 9999988873

The most closely related proteins characterised as functionally different are the rusticyanins.

>KOG3858 consensus Ephrin, ligand for Eph receptor tyrosine kinase [Signal transduction mechanisms]

Probab=96.09  E-value=0.027  Score=44.39  Aligned_cols=74  Identities=20%  Similarity=0.304  Sum_probs=44.0

Q ss_pred             eeeeCCEEEEEe---CCC------CCeEEEECcCCCCCCCC-CCCCccc------------------ccCCcEEEeCCc-
Q 048131           50 TFKCGDILEFNY---DPQ------RHNVIIVDQEGHDSCKP-ASDAKKF------------------QTGKDQIVLNHG-  100 (124)
Q Consensus        50 ~f~vGD~L~F~y---~~~------~h~V~~V~~~~y~~C~~-~~~~~~~------------------~~G~~~v~l~~G-  100 (124)
                      -+++||.|-+-=   +.+      ..=+++|++++|+.|+. +.+...+                  +.-...+.+.|| 
T Consensus        46 ~v~igD~ldIiCP~~e~~~~~~~E~yilYmV~~~~y~~C~~~s~~~~~~~C~rP~~~~kfsikFq~ftP~p~G~EF~pG~  125 (233)
T KOG3858|consen   46 YVQIGDYLDIICPHYEEGGPEGYEYYILYMVSEEEYDLCELRSKPFKRWECNRPSTPLKFSIKFQRFTPFPLGFEFQPGH  125 (233)
T ss_pred             EeccCCEEEEECCCCCCCCCCcceEEEEEEeChHHhhhhhccCCCcEEEEecCCCcchhhhhhheecCCCCCCccccCCC
Confidence            356788887753   322      12457889999999996 4332211                  111223455577 


Q ss_pred             ceEEEeC-----------CCCCccCCCcEEEEEe
Q 048131          101 KNFFICG-----------VPTHCSDHGMKLEINV  123 (124)
Q Consensus       101 ~~yfic~-----------~~~hC~~~GmKl~I~V  123 (124)
                      +|||||+           .++-|....||+.+.|
T Consensus       126 ~YY~IStStg~~~g~~~~~ggvc~~~~mk~~~~V  159 (233)
T KOG3858|consen  126 TYYYISTSTGDAEGLCNLRGGVCVTRNMKLLMKV  159 (233)
T ss_pred             eEEEEeCCCccccccchhhCCEeccCCceEEEEe
Confidence            5777765           2355665568887765

>TIGR03094 sulfo_cyanin sulfocyanin

Probab=96.09  E-value=0.023  Score=43.48  Aligned_cols=24  Identities=33%  Similarity=0.709  Sum_probs=22.2

Q ss_pred             CcceEEEeCCCCCccCCCcEEEEEe
Q 048131           99 HGKNFFICGVPTHCSDHGMKLEINV  123 (124)
Q Consensus        99 ~G~~yfic~~~~hC~~~GmKl~I~V  123 (124)
                      ||.||++|+.+||-+ .||=..+.|
T Consensus       161 ~G~YwlvCgipGHAe-sGMw~~lIV  184 (195)
T TIGR03094       161 AGKYWLVCGITGHAE-SGMWAVVIV  184 (195)
T ss_pred             CeeEEEEcccCChhh-cCcEEEEEE
Confidence            799999999999999 999877766

Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.

>PF00812 Ephrin: Ephrin; InterPro: IPR001799 Ephrins are a family of proteins [] that are ligands of class V (EPH-related) receptor protein-tyrosine kinases (see IPR001426 from INTERPRO)

Probab=95.94  E-value=0.0042  Score=45.65  Aligned_cols=74  Identities=24%  Similarity=0.413  Sum_probs=44.7

Q ss_pred             eeeeCCEEEEEeCC---C--------CCeEEEECcCCCCCCCCC-CCCc------ccc-cCCcEEEe-------------
Q 048131           50 TFKCGDILEFNYDP---Q--------RHNVIIVDQEGHDSCKPA-SDAK------KFQ-TGKDQIVL-------------   97 (124)
Q Consensus        50 ~f~vGD~L~F~y~~---~--------~h~V~~V~~~~y~~C~~~-~~~~------~~~-~G~~~v~l-------------   97 (124)
                      .+++||.|-+-=+.   .        ...+++|++++|+.|+.. .+..      +.. .|+..|++             
T Consensus        25 ~V~i~D~ldIiCP~~~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~l~~C~~P~~~~~~~kft~kFq~fSP~p~G~E  104 (145)
T PF00812_consen   25 EVRIGDYLDIICPHYEPGGPPPEEYEYYILYMVSEEGYESCSLTSRPRLLWECDRPEAPHGPKKFTIKFQEFSPFPLGLE  104 (145)
T ss_dssp             EE-TTEEEEEEE--SSSSSSSCSSS-BEEEEEE-HHHHHHTBSSTSEEEEEEE-TTTSTTSSEEEEEESSSS-SSTTSSS
T ss_pred             EecCCCEEEEECCCCCCCCCCCCCceEEEEEEEcHHHhcccCCCCCCcEEEEeCCCCCCCCCcEEEEEEEECCCCCCCee
Confidence            56789999886542   2        356888999999999963 3321      111 13333332             


Q ss_pred             -CCc-ceEEEeCC-----------CCCccCCCcEEEEEe
Q 048131           98 -NHG-KNFFICGV-----------PTHCSDHGMKLEINV  123 (124)
Q Consensus        98 -~~G-~~yfic~~-----------~~hC~~~GmKl~I~V  123 (124)
                       .|| .||||++=           +|-|....|||.+.|
T Consensus       105 F~pG~~YY~ISts~g~~~g~~~~~gG~C~~~~mkl~~~v  143 (145)
T PF00812_consen  105 FQPGHDYYYISTSTGTQEGLDNRRGGLCLSHNMKLRIKV  143 (145)
T ss_dssp             --TTEEEEEEEEESSSSTTTTSSBSCHHHEEEEEEEEEC
T ss_pred             ecCCCeEEEEEccCCCCCCcccccccccCcCeeEEEEec
Confidence             266 57788651           233886789999987

These receptors and their ligands have been implicated in regulating neuronal axon guidance and in patterning of the developing nervous system and may also serve a patterning and compartmentalisation role outside of the nervous system as well. Ephrins are membrane-attached proteins of 205 to 340 residues. Attachment appears to be crucial for their normal function. Type-A ephrins are linked to the membrane via a glycosylphosphatidylinositol (GPI)-linkage, while type-B ephrins are type-I membrane proteins.; GO: 0016020 membrane; PDB: 3HEI_P 3CZU_B 3MBW_B 1KGY_E 1IKO_P 2WO3_B 2I85_A 2VSK_B 3GXU_B 2VSM_B ....

>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]

Probab=94.88  E-value=0.049  Score=40.60  Aligned_cols=76  Identities=24%  Similarity=0.420  Sum_probs=47.7

Q ss_pred             CCCCeeeeCCEEEEEeCCC---CCeEEEECcCC-----CCC--------CCCCCCCcccccC---CcEEEeC-CcceEEE
Q 048131           46 PEGKTFKCGDILEFNYDPQ---RHNVIIVDQEG-----HDS--------CKPASDAKKFQTG---KDQIVLN-HGKNFFI  105 (124)
Q Consensus        46 a~~~~f~vGD~L~F~y~~~---~h~V~~V~~~~-----y~~--------C~~~~~~~~~~~G---~~~v~l~-~G~~yfi  105 (124)
                      +++..++.|.+++|.-...   .|....- +++     +..        -+..+. .....|   .-++.++ +|+|=|+
T Consensus        62 p~~~~v~aG~tv~~v~~n~~el~hef~~~-~~~~~~~~~~~~~~~~Dme~d~~~~-v~L~PG~s~elvv~ft~~g~ye~~  139 (158)
T COG4454          62 PSSFEVKAGETVRFVLKNEGELKHEFTMD-APDKNLEHVTHMILADDMEHDDPNT-VTLAPGKSGELVVVFTGAGKYEFA  139 (158)
T ss_pred             CCcccccCCcEEeeeecCcccceEEEecc-CccccchhHHHhhhCCccccCCcce-eEeCCCCcEEEEEEecCCccEEEE
Confidence            3456788999998877643   3444332 111     100        011111 122333   3367777 8999999


Q ss_pred             eCCCCCccCCCcEEEEEeC
Q 048131          106 CGVPTHCSDHGMKLEINVE  124 (124)
Q Consensus       106 c~~~~hC~~~GmKl~I~V~  124 (124)
                      |.+|+|-+ .||...|+|.
T Consensus       140 C~iPGHy~-AGM~g~itV~  157 (158)
T COG4454         140 CNIPGHYE-AGMVGEITVS  157 (158)
T ss_pred             ecCCCccc-CCcEEEEEeC
Confidence            99999999 9999999985

>TIGR03096 nitroso_cyanin nitrosocyanin

Probab=93.95  E-value=0.17  Score=36.80  Aligned_cols=56  Identities=14%  Similarity=0.221  Sum_probs=34.4

Q ss_pred             CCCeeeeCCEEEEEeCC---CCCeEEEECcCCCCCCCCCCCCcccccCCc---EEEeC-CcceEEEeCCCCCcc
Q 048131           47 EGKTFKCGDILEFNYDP---QRHNVIIVDQEGHDSCKPASDAKKFQTGKD---QIVLN-HGKNFFICGVPTHCS  113 (124)
Q Consensus        47 ~~~~f~vGD~L~F~y~~---~~h~V~~V~~~~y~~C~~~~~~~~~~~G~~---~v~l~-~G~~yfic~~~~hC~  113 (124)
                      +..+++.||.+.+.+.+   -.|++..   .+|.   .+   .....|.+   +|+.+ ||.|.|.|+.  ||.
T Consensus        61 ~~I~VkaGD~Vtl~vtN~d~~~H~f~i---~~~g---is---~~I~pGet~TitF~adKpG~Y~y~C~~--HP~  123 (135)
T TIGR03096        61 EALVVKKGTPVKVTVENKSPISEGFSI---DAYG---IS---EVIKAGETKTISFKADKAGAFTIWCQL--HPK  123 (135)
T ss_pred             CEEEECCCCEEEEEEEeCCCCccceEE---CCCC---cc---eEECCCCeEEEEEECCCCEEEEEeCCC--CCh
Confidence            45688999999887753   2365544   2232   11   12233433   45556 8999999997  665

Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.

>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D

Probab=92.33  E-value=0.2  Score=33.78  Aligned_cols=55  Identities=22%  Similarity=0.402  Sum_probs=27.3

Q ss_pred             CCeeeeCC--EEEEEeCC-CCCeEEEECcCCCCCCCCCCCCcccccCCc-EEEe--C-CcceEEEeCCCCC
Q 048131           48 GKTFKCGD--ILEFNYDP-QRHNVIIVDQEGHDSCKPASDAKKFQTGKD-QIVL--N-HGKNFFICGVPTH  111 (124)
Q Consensus        48 ~~~f~vGD--~L~F~y~~-~~h~V~~V~~~~y~~C~~~~~~~~~~~G~~-~v~l--~-~G~~yfic~~~~h  111 (124)
                      ..+++.|+  +|+|+... ..|++.. ++        .+.......|.+ ++++  . ||.|=|.|+.+.+
T Consensus        36 ~i~v~~G~~v~l~~~N~~~~~h~~~i-~~--------~~~~~~l~~g~~~~~~f~~~~~G~y~~~C~~~~~   97 (104)
T PF13473_consen   36 TITVKAGQPVTLTFTNNDSRPHEFVI-PD--------LGISKVLPPGETATVTFTPLKPGEYEFYCTMHPN   97 (104)
T ss_dssp             EEEEETTCEEEEEEEE-SSS-EEEEE-GG--------GTEEEEE-TT-EEEEEEEE-S-EEEEEB-SSS-T
T ss_pred             EEEEcCCCeEEEEEEECCCCcEEEEE-CC--------CceEEEECCCCEEEEEEcCCCCEEEEEEcCCCCc
Confidence            47899999  55555442 3566644 22        111122333433 4555  5 8999999997654

>PLN02604 oxidoreductase

Probab=90.83  E-value=1.7  Score=38.11  Aligned_cols=84  Identities=12%  Similarity=0.120  Sum_probs=49.1

Q ss_pred             CCccccCCCCCCeeeeCCEEEEEeCCCC---------CeEEEECcCCCCCCCCCC-CCcccccCCc---EEEeC-CcceE
Q 048131           38 WVFGVQNWPEGKTFKCGDILEFNYDPQR---------HNVIIVDQEGHDSCKPAS-DAKKFQTGKD---QIVLN-HGKNF  103 (124)
Q Consensus        38 W~~~~~~Wa~~~~f~vGD~L~F~y~~~~---------h~V~~V~~~~y~~C~~~~-~~~~~~~G~~---~v~l~-~G~~y  103 (124)
                      |+++-.-.....+++.||+++++..+..         |.+.+.....+|.  .+. .......|.+   .|+++ +|++|
T Consensus        46 ~~~Ng~~pgP~i~~~~Gd~v~v~v~N~l~~~~~~iH~HG~~~~~~~~~DG--~~~~tq~~i~pg~s~~y~f~~~~~Gt~w  123 (566)
T PLN02604         46 ITINGRSPGPTILAQQGDTVIVELKNSLLTENVAIHWHGIRQIGTPWFDG--TEGVTQCPILPGETFTYEFVVDRPGTYL  123 (566)
T ss_pred             EEECCccCCCcEEEECCCEEEEEEEeCCCCCCCCEEeCCCCCCCCccccC--CCccccCccCCCCeEEEEEEcCCCEEEE
Confidence            4433233345678999999999886431         2332221111111  000 0012233433   56666 89999


Q ss_pred             EEeCCCCCccCCCcEEEEEeC
Q 048131          104 FICGVPTHCSDHGMKLEINVE  124 (124)
Q Consensus       104 fic~~~~hC~~~GmKl~I~V~  124 (124)
                      |=|-...|-. .||.-.|.|+
T Consensus       124 yH~H~~~q~~-~Gl~G~liV~  143 (566)
T PLN02604        124 YHAHYGMQRE-AGLYGSIRVS  143 (566)
T ss_pred             EeeCcHHHHh-CCCeEEEEEE
Confidence            9999988988 9999988874

>PLN02354 copper ion binding / oxidoreductase

Probab=90.23  E-value=4.1  Score=35.73  Aligned_cols=72  Identities=11%  Similarity=0.042  Sum_probs=45.6

Q ss_pred             CCeeeeCCEEEEEeCCC--------CCeEEEECcCCCC-----CCCCCCCCcccccCCcEEEe-C-CcceEEEeCCCCCc
Q 048131           48 GKTFKCGDILEFNYDPQ--------RHNVIIVDQEGHD-----SCKPASDAKKFQTGKDQIVL-N-HGKNFFICGVPTHC  112 (124)
Q Consensus        48 ~~~f~vGD~L~F~y~~~--------~h~V~~V~~~~y~-----~C~~~~~~~~~~~G~~~v~l-~-~G~~yfic~~~~hC  112 (124)
                      ..++..||+|+.+..+.        -|.+.|-.....|     .|    |+....+=.-.|++ + +|++||=+-...+-
T Consensus        59 ~I~~~~GD~v~V~v~N~l~~~ttiHWHGi~q~~~~~~DGv~~TQc----pI~PG~sf~Y~F~~~~q~GT~WYHsH~~~Q~  134 (552)
T PLN02354         59 NINSTSNNNIVINVFNNLDEPFLLTWSGIQQRKNSWQDGVPGTNC----PIPPGTNFTYHFQPKDQIGSYFYYPSTGMHR  134 (552)
T ss_pred             cEEEeCCCEEEEEEEECCCCCcccccccccCCCCcccCCCcCCcC----CCCCCCcEEEEEEeCCCCcceEEecCcccee
Confidence            35789999999887643        3566554222222     23    22222111226776 4 69999999887777


Q ss_pred             cCCCcEEEEEeC
Q 048131          113 SDHGMKLEINVE  124 (124)
Q Consensus       113 ~~~GmKl~I~V~  124 (124)
                      . .||.-.|.|+
T Consensus       135 ~-~Gl~G~lII~  145 (552)
T PLN02354        135 A-AGGFGGLRVN  145 (552)
T ss_pred             c-CCccceEEEc
Confidence            7 8888888775

>TIGR02695 azurin azurin

Probab=89.25  E-value=2.3  Score=30.59  Aligned_cols=28  Identities=21%  Similarity=0.553  Sum_probs=20.2

Q ss_pred             cEEEeC-----Ccc-eEEEeCCCCCccCCCcEEEEE
Q 048131           93 DQIVLN-----HGK-NFFICGVPTHCSDHGMKLEIN  122 (124)
Q Consensus        93 ~~v~l~-----~G~-~yfic~~~~hC~~~GmKl~I~  122 (124)
                      ++|+++     +|. |=|+|++|||=.  .||-.+.
T Consensus        91 ~svtF~~~~l~~g~~Y~f~CSFPGH~~--~MkG~l~  124 (125)
T TIGR02695        91 TSVTFDVSKLSAGEDYTFFCSFPGHWA--MMRGTVK  124 (125)
T ss_pred             EEEEEECCCCCCCCcceEEEcCCCcHH--hceEEEe
Confidence            355553     465 779999999976  5887654

Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.

>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing

Probab=87.18  E-value=1.8  Score=35.12  Aligned_cols=73  Identities=22%  Similarity=0.266  Sum_probs=44.4

Q ss_pred             CCeeeeCCEEEEEeCCC-----CCeEEEECcCCCCCCCCCCCCcccccCCc---EEEeC-CcceEEEeCC----CCCccC
Q 048131           48 GKTFKCGDILEFNYDPQ-----RHNVIIVDQEGHDSCKPASDAKKFQTGKD---QIVLN-HGKNFFICGV----PTHCSD  114 (124)
Q Consensus        48 ~~~f~vGD~L~F~y~~~-----~h~V~~V~~~~y~~C~~~~~~~~~~~G~~---~v~l~-~G~~yfic~~----~~hC~~  114 (124)
                      ..+++.||++...+.+.     .|++..=-....   +...+......|.+   .|+++ +|+|||-|..    ..|=. 
T Consensus        60 ~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~~~---dg~~~~~~I~PG~t~ty~F~~~~~Gty~YH~H~~~~~~~q~~-  135 (311)
T TIGR02376        60 LIRVHEGDYVELTLINPPTNTMPHNVDFHAATGA---LGGAALTQVNPGETATLRFKATRPGAFVYHCAPPGMVPWHVV-  135 (311)
T ss_pred             eEEEECCCEEEEEEEeCCCCCCceeeeecCCCcc---CCCCcceeECCCCeEEEEEEcCCCEEEEEEcCCCCchhHHhh-
Confidence            36789999999877653     466543110000   00011122334433   56666 8999999995    34767 


Q ss_pred             CCcEEEEEeC
Q 048131          115 HGMKLEINVE  124 (124)
Q Consensus       115 ~GmKl~I~V~  124 (124)
                      .||...+.|+
T Consensus       136 ~Gl~G~liV~  145 (311)
T TIGR02376       136 SGMNGAIMVL  145 (311)
T ss_pred             cCcceEEEee
Confidence            8999988875

This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.

>PRK02888 nitrous-oxide reductase; Validated

Probab=86.18  E-value=1.8  Score=38.72  Aligned_cols=66  Identities=18%  Similarity=0.211  Sum_probs=41.5

Q ss_pred             CCeeeeCCEEEEEeCCC------CCeEEEECcCCCCCCCCCCCCcccccCC---cEEEeC-CcceEEEeCCCCCccC--C
Q 048131           48 GKTFKCGDILEFNYDPQ------RHNVIIVDQEGHDSCKPASDAKKFQTGK---DQIVLN-HGKNFFICGVPTHCSD--H  115 (124)
Q Consensus        48 ~~~f~vGD~L~F~y~~~------~h~V~~V~~~~y~~C~~~~~~~~~~~G~---~~v~l~-~G~~yfic~~~~hC~~--~  115 (124)
                      ..+++.||.+.|..++-      .|+...   ..|.      .......|.   -+|+.+ ||.|+|+|+.  .|-.  .
T Consensus       556 ~i~Vk~GDeVt~~lTN~d~~~DViHGF~I---p~~n------I~~dv~PG~t~svtF~adkPGvy~~~Cte--fCGa~H~  624 (635)
T PRK02888        556 EFTVKQGDEVTVIVTNLDKVEDLTHGFAI---PNYG------VNMEVAPQATASVTFTADKPGVYWYYCTW--FCHALHM  624 (635)
T ss_pred             eEEecCCCEEEEEEEeCCcccccccceee---cccC------ccEEEcCCceEEEEEEcCCCEEEEEECCc--ccccCcc
Confidence            36789999999999852      355444   1221      111122232   256667 9999999997  4652  3


Q ss_pred             CcEEEEEeC
Q 048131          116 GMKLEINVE  124 (124)
Q Consensus       116 GmKl~I~V~  124 (124)
                      +|+..|.|+
T Consensus       625 ~M~G~~iVe  633 (635)
T PRK02888        625 EMRGRMLVE  633 (635)
T ss_pred             cceEEEEEE
Confidence            688888875

>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins

Probab=84.41  E-value=0.41  Score=32.72  Aligned_cols=25  Identities=20%  Similarity=0.158  Sum_probs=12.1

Q ss_pred             CCcccchHHHHHHHHHHHHhhccccee
Q 048131            1 MAQARGSAIIAVVTVLLLLMHCNIGSA   27 (124)
Q Consensus         1 ma~~~~~~~~~~~~~~~~~~~~~~a~a   27 (124)
                      ||.+.  .++++|+|+++|+.++.++|
T Consensus         1 MaSK~--~llL~l~LA~lLlisSevaa   25 (95)
T PF07172_consen    1 MASKA--FLLLGLLLAALLLISSEVAA   25 (95)
T ss_pred             CchhH--HHHHHHHHHHHHHHHhhhhh
Confidence            66433  22355666655554444443

Some of them may be involved in resistance to environmental stress [].

>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties

Probab=82.35  E-value=0.75  Score=32.06  Aligned_cols=76  Identities=13%  Similarity=0.062  Sum_probs=44.1

Q ss_pred             CCeeeeCCEEEEEeCCC---CCeEEE----ECcC-CCCC--CCCCCCCcccccCCcEEEeC--CcceEEEeCCCCCccCC
Q 048131           48 GKTFKCGDILEFNYDPQ---RHNVII----VDQE-GHDS--CKPASDAKKFQTGKDQIVLN--HGKNFFICGVPTHCSDH  115 (124)
Q Consensus        48 ~~~f~vGD~L~F~y~~~---~h~V~~----V~~~-~y~~--C~~~~~~~~~~~G~~~v~l~--~G~~yfic~~~~hC~~~  115 (124)
                      ..+++.||+|..++.+.   .+++.-    ++.. ..|.  -....++..-.+-.-.|+++  +|++||-|...++=. .
T Consensus        27 tI~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~~~~~~-~  105 (117)
T PF07732_consen   27 TIRVREGDTVRITVTNNLDEPTSIHWHGLHQPPSPWMDGVPGVTQCPIAPGESFTYEFTANQQAGTYWYHSHVHGQQV-M  105 (117)
T ss_dssp             EEEEETTEEEEEEEEEESSSGBSEEEETSBSTTGGGGSGGTTTSGSSBSTTEEEEEEEEESSCSEEEEEEECSTTHHH-T
T ss_pred             EEEEEcCCeeEEEEEeccccccccccceeeeeeeeecCCcccccceeEEeecceeeeEeeeccccceeEeeCCCchhc-C
Confidence            36789999999998742   344422    1111 0110  01111222211112256665  599999999988666 8


Q ss_pred             CcEEEEEeC
Q 048131          116 GMKLEINVE  124 (124)
Q Consensus       116 GmKl~I~V~  124 (124)
                      ||--.+.|+
T Consensus       106 GL~G~~iV~  114 (117)
T PF07732_consen  106 GLYGAIIVE  114 (117)
T ss_dssp             TEEEEEEEE
T ss_pred             cCEEEEEEc
Confidence            999888875

Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....

>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional

Probab=81.38  E-value=6.5  Score=33.11  Aligned_cols=26  Identities=23%  Similarity=0.276  Sum_probs=17.1

Q ss_pred             cEEEeCCcceEEEeCCCCCccCCCcEEEEEe
Q 048131           93 DQIVLNHGKNFFICGVPTHCSDHGMKLEINV  123 (124)
Q Consensus        93 ~~v~l~~G~~yfic~~~~hC~~~GmKl~I~V  123 (124)
                      -+++|.||+|-|+|+.  | .  .||-.|+|
T Consensus        90 l~~~L~pGtY~~~C~~--~-~--~~~g~l~V  115 (375)
T PRK10378         90 MTANLQPGEYDMTCGL--L-T--NPKGKLIV  115 (375)
T ss_pred             EEEecCCceEEeecCc--C-C--CCCceEEE
Confidence            3566669999999976  4 2  23555555

>TIGR02866 CoxB cytochrome c oxidase, subunit II

Probab=80.07  E-value=5.7  Score=30.03  Aligned_cols=84  Identities=14%  Similarity=0.177  Sum_probs=48.8

Q ss_pred             EEEecCCCCCCccccCC------CCCCeeeeCCEEEEEeCCC--CCeEEEECcCCCCCCCCCCCCc-ccccCCc---EEE
Q 048131           29 TFKVGDDGGWVFGVQNW------PEGKTFKCGDILEFNYDPQ--RHNVIIVDQEGHDSCKPASDAK-KFQTGKD---QIV   96 (124)
Q Consensus        29 ~~~VG~~~gW~~~~~~W------a~~~~f~vGD~L~F~y~~~--~h~V~~V~~~~y~~C~~~~~~~-~~~~G~~---~v~   96 (124)
                      ..++|-.=.|.+.|.+.      .....+.+|+.+.|.-++.  .|+...-   ++       ..+ ..-.|..   .++
T Consensus        93 i~v~~~qw~W~f~Y~~~~~~~~~~~~l~vp~g~~v~~~~ts~DV~Hsf~ip---~~-------~~k~da~PG~~~~~~~~  162 (201)
T TIGR02866        93 VKVEGHQWYWSFDYPESRRGFTTVNELVVPAGTPVRLQVTSKDVIHSFWVP---EL-------GGKIDAIPGQYNALWFN  162 (201)
T ss_pred             EEEEEEEeEEEEEcCCcCCCccccCEEEEEcCCEEEEEEEeCchhhccccc---cc-------CceEEecCCcEEEEEEE
Confidence            44566566677777543      1223577889998887743  2443331   11       111 1112332   455


Q ss_pred             eC-CcceEEEeCCCCCccC--CCcEEEEEeC
Q 048131           97 LN-HGKNFFICGVPTHCSD--HGMKLEINVE  124 (124)
Q Consensus        97 l~-~G~~yfic~~~~hC~~--~GmKl~I~V~  124 (124)
                      .+ ||.|+..|++  .|-.  +.|++.|.|+
T Consensus       163 ~~~~G~y~~~c~e--~cG~~h~~M~~~v~v~  191 (201)
T TIGR02866       163 ADEPGVYYGYCAE--LCGAGHSLMLFKVVVV  191 (201)
T ss_pred             eCCCEEEEEEehh--hCCcCccCCeEEEEEE
Confidence            66 8999999997  4541  3499988873

Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	124
2cbp_A	96	Cucumber Basic Protein, A Blue Copper Protein Lengt		6e-24
1f56_A	91	Spinach Plantacyanin Length = 91		3e-17
1ws7_A	109	Crystal Structure Of Mavicyanin From Cucurbita Pepo		9e-16
1x9r_A	116	Umecyanin From Horse Raddish- Crystal Structure Of		1e-09
1jer_A	138	Cucumber Stellacyanin, Cu2+, Ph 7.0 Length = 138		8e-09

>pdb|2CBP|A Chain A, Cucumber Basic Protein, A Blue Copper Protein Length = 96

Iteration: 1
 Score =  105 bits (262), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 44/95 (46%), Positives = 63/95 (66%), Gaps = 1/95 (1%)
Query: 28  TTFKVGDDGGWVFGVQNWPEGKTFKCGDILEFNYDPQRHNVIIVDQEGHDSCKPASDAKK 87
             + VG  GGW F  ++WP+GK F+ GDIL FNY+P  HNV++V+Q G  +C   + AK 
Sbjct: 1   AVYVVGGSGGWTFNTESWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNTPAGAKV 60
Query: 88  FQTGKDQIVLNHGKNFFICGVPTHCSDHGMKLEIN 122
           + +G+DQI L  G+++FIC  P HC   GMK+ +N
Sbjct: 61  YTSGRDQIKLPKGQSYFICNFPGHCQS-GMKIAVN 94

>pdb|1F56|A Chain A, Spinach Plantacyanin Length = 91

Iteration: 1
 Score = 83.2 bits (204), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 38/88 (43%), Positives = 54/88 (61%), Gaps = 2/88 (2%)
Query: 37  GWVFGVQNWPEGKTFKCGDILEFNYDPQRHNVIIVDQEGHDSCKPASDAKKFQTGKDQIV 96
           GW F V N   GK+F+ GD+L F Y   +HNV+ V+  G+ SC     A+ + +G+D+I 
Sbjct: 6   GWSFNV-NGARGKSFRAGDVLVFKYIKGQHNVVAVNGRGYASCSAPRGARTYSSGQDRIK 64
Query: 97  LNHGKNFFICGVPTHCSDHGMKLEINVE 124
           L  G+N+FIC  P HC   GMK+ IN +
Sbjct: 65  LTRGQNYFICSFPGHCGG-GMKIAINAK 91

>pdb|1WS7|A Chain A, Crystal Structure Of Mavicyanin From Cucurbita Pepo Medullosa (Zucchini) Length = 109

Iteration: 1
 Score = 78.6 bits (192), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 43/103 (41%), Positives = 55/103 (53%), Gaps = 6/103 (5%)
Query: 27  ATTFKVGDDGGWV----FGVQNWPEGKTFKCGDILEFNYDPQRHNVIIVDQEGHDSCKPA 82
           AT  KVGD  GW     +    W     F  GD L FNY+ + HNV+ VDQE   SC  +
Sbjct: 2   ATVHKVGDSTGWTTLVPYDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNSS 61
Query: 83  SDAKKFQTGKDQIVLNH-GKNFFICGVPTHCSDHGMKLEINVE 124
           S A  + +G D I L   G  +F+CG+P HC   G K+EI V+
Sbjct: 62  SPAASYTSGADSIPLKRPGTFYFLCGIPGHC-QLGQKVEIKVD 103

>pdb|1X9R|A Chain A, Umecyanin From Horse Raddish- Crystal Structure Of The Oxidised Form Length = 116

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 44  NWPEGKTFKCGDILEFNYDPQRHNVIIVDQEGHDSCKPASDAKKFQTGKDQIVLN-HGKN 102
            W  GKTF+ GD LEF++    H+V +V ++  D+CK  +      T   +I+LN  G  
Sbjct: 23  TWATGKTFRVGDELEFDFAAGMHDVAVVTKDAFDNCKKENPISHMTTPPVKIMLNTTGPQ 82
Query: 103 FFICGVPTHCSDHGMKLEINV 123
           ++IC V  HC   G KL INV
Sbjct: 83  YYICTVGDHCR-VGQKLSINV 102

>pdb|1JER|A Chain A, Cucumber Stellacyanin, Cu2+, Ph 7.0 Length = 138

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 53/105 (50%), Gaps = 9/105 (8%)
Query: 27  ATTFKVGDDGGWVFG-----VQNWPEGKTFKCGDILEFNYDPQRHNVIIVD-QEGHDSCK 80
           +T   VGD+ GW           W  GKTF+ GD L+FN+    HNV  ++ ++  D+C 
Sbjct: 3   STVHIVGDNTGWSVPSSPNFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACN 62
Query: 81  PASDAKKFQTGKDQI--VLNHGKNFFICGVPTHCSDHGMKLEINV 123
             +     +     I  +   G ++F+C V THCS+ G KL INV
Sbjct: 63  FVNSDNDVERTSPVIERLDELGMHYFVCTVGTHCSN-GQKLSINV 106

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	124
1f56_A	91	Plantacyanin; cupredoxin, copper protein, beta bar	5e-34
2cbp_A	96	Cucumber basic protein; electron transport, phytoc	5e-33
1ws8_A	109	Mavicyanin; oxidized form, phytocyanin, cupredoxin	5e-33
1x9u_A	116	Umecyanin; cupredoxin, phytocyanin, copper binding	4e-31
1jer_A	138	Cucumber stellacyanin; electron transport, copper,	2e-30

>1f56_A Plantacyanin; cupredoxin, copper protein, beta barrel, plant protein; 2.05A {Spinacia oleracea} SCOP: b.6.1.1 Length = 91

 Score =  112 bits (282), Expect = 5e-34
 Identities = 38/88 (43%), Positives = 54/88 (61%), Gaps = 2/88 (2%)

Query: 37  GWVFGVQNWPEGKTFKCGDILEFNYDPQRHNVIIVDQEGHDSCKPASDAKKFQTGKDQIV 96
           GW F V N   GK+F+ GD+L F Y   +HNV+ V+  G+ SC     A+ + +G+D+I 
Sbjct: 6   GWSFNV-NGARGKSFRAGDVLVFKYIKGQHNVVAVNGRGYASCSAPRGARTYSSGQDRIK 64

Query: 97  LNHGKNFFICGVPTHCSDHGMKLEINVE 124
           L  G+N+FIC  P HC   GMK+ IN +
Sbjct: 65  LTRGQNYFICSFPGHCG-GGMKIAINAK 91

>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1 Length = 96

 Score =  110 bits (276), Expect = 5e-33
 Identities = 44/95 (46%), Positives = 63/95 (66%), Gaps = 1/95 (1%)

Query: 29  TFKVGDDGGWVFGVQNWPEGKTFKCGDILEFNYDPQRHNVIIVDQEGHDSCKPASDAKKF 88
            + VG  GGW F  ++WP+GK F+ GDIL FNY+P  HNV++V+Q G  +C   + AK +
Sbjct: 2   VYVVGGSGGWTFNTESWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNTPAGAKVY 61

Query: 89  QTGKDQIVLNHGKNFFICGVPTHCSDHGMKLEINV 123
            +G+DQI L  G+++FIC  P HC   GMK+ +N 
Sbjct: 62  TSGRDQIKLPKGQSYFICNFPGHCQ-SGMKIAVNA 95

>1ws8_A Mavicyanin; oxidized form, phytocyanin, cupredoxin, electron transport; 1.60A {Cucurbita pepo} SCOP: b.6.1.1 PDB: 1ws7_A Length = 109

 Score =  110 bits (277), Expect = 5e-33
 Identities = 44/103 (42%), Positives = 55/103 (53%), Gaps = 6/103 (5%)

Query: 27  ATTFKVGDDGGWVFGVQ----NWPEGKTFKCGDILEFNYDPQRHNVIIVDQEGHDSCKPA 82
           AT  KVGD  GW   V      W     F  GD L FNY+ + HNV+ VDQE   SC  +
Sbjct: 2   ATVHKVGDSTGWTTLVPYDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNSS 61

Query: 83  SDAKKFQTGKDQIVLNH-GKNFFICGVPTHCSDHGMKLEINVE 124
           S A  + +G D I L   G  +F+CG+P HC   G K+EI V+
Sbjct: 62  SPAASYTSGADSIPLKRPGTFYFLCGIPGHCQ-LGQKVEIKVD 103

>1x9u_A Umecyanin; cupredoxin, phytocyanin, copper binding site, beta barrel, electron transport; 1.80A {Armoracia rusticana} PDB: 1x9r_A Length = 116

 Score =  106 bits (265), Expect = 4e-31
 Identities = 36/101 (35%), Positives = 50/101 (49%), Gaps = 7/101 (6%)

Query: 30  FKVGDDGGWVFGV-----QNWPEGKTFKCGDILEFNYDPQRHNVIIVDQEGHDSCKPASD 84
           + VG D  W           W  GKTF+ GD LEF++    H+V +V ++  D+CK  + 
Sbjct: 4   YDVGGDMEWKRPSDPKFYITWATGKTFRVGDELEFDFAAGMHDVAVVTKDAFDNCKKENP 63

Query: 85  AKKFQTGKDQIVLNH-GKNFFICGVPTHCSDHGMKLEINVE 124
                T   +I+LN  G  ++IC V  HC   G KL INV 
Sbjct: 64  ISHMTTPPVKIMLNTTGPQYYICTVGDHCR-VGQKLSINVV 103

>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1 Length = 138

 Score =  105 bits (262), Expect = 2e-30
 Identities = 36/107 (33%), Positives = 53/107 (49%), Gaps = 9/107 (8%)

Query: 26  SATTFKVGDDGGWVFGV-----QNWPEGKTFKCGDILEFNYDPQRHNVIIVD-QEGHDSC 79
            +T   VGD+ GW           W  GKTF+ GD L+FN+    HNV  ++ ++  D+C
Sbjct: 2   QSTVHIVGDNTGWSVPSSPNFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDAC 61

Query: 80  KPASDAKKFQTGKDQI--VLNHGKNFFICGVPTHCSDHGMKLEINVE 124
              +     +     I  +   G ++F+C V THCS +G KL INV 
Sbjct: 62  NFVNSDNDVERTSPVIERLDELGMHYFVCTVGTHCS-NGQKLSINVV 107

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	124
2cbp_A	96	Cucumber basic protein; electron transport, phytoc	100.0
1ws8_A	109	Mavicyanin; oxidized form, phytocyanin, cupredoxin	100.0
1jer_A	138	Cucumber stellacyanin; electron transport, copper,	100.0
1x9u_A	116	Umecyanin; cupredoxin, phytocyanin, copper binding	100.0
1f56_A	91	Plantacyanin; cupredoxin, copper protein, beta bar	100.0
1qhq_A	140	Protein (auracyanin); electron transfer, cupredoxi	99.3
2cal_A	154	Rusticyanin; iron respiratory electron transport c	99.23
1bxv_A	91	Plastocyanin; copper protein, electron transfer; 1	99.17
1iuz_A	98	Plastocyanin; electron transport; 1.60A {Ulva pert	98.93
2aan_A	139	Auracyanin A; cupredoxin fold, electron transport;	98.88
1kdj_A	102	Plastocyanin; electron transfer, photosystem, PAI-	98.85
1pmy_A	123	Pseudoazurin; electron transfer(cuproprotein); 1.5	98.84
2plt_A	98	Plastocyanin; electron transport; 1.50A {Chlamydom	98.83
2gim_A	106	Plastocyanin; beta sheet, Cu, helix, electron tran	98.82
1paz_A	123	Pseudoazurin precursor; electron transfer(cupropro	98.82
1plc_A	99	Plastocyanin; electron transport; 1.33A {Populus n	98.81
1b3i_A	97	PETE protein, protein (plastocyanin); electron tra	98.75
3ef4_A	124	Pseudoazurin, blue copper protein; electron transf	98.74
3erx_A	123	Pseudoazurin; copper protein, high-resolution, E t	98.72
3tu6_A	127	Pseudoazurin (blue copper protein); cupredoxins, b	98.69
1byp_A	99	Protein (plastocyanin); electron transfer, photosy	98.68
1pcs_A	98	Plastocyanin; electron transport; 2.15A {Synechocy	98.6
4hci_A	100	Cupredoxin 1; structural genomics, niaid, national	98.12
3c75_A	132	Amicyanin; copper proteins, electron transfer comp	98.1
3cvb_A	105	Plastocyanin; cupredoxin, SELF assembly, copper, e	98.02
2ux6_A	122	Pseudoazurin; type-1 copper, metal-binding, redox	97.9
1cuo_A	129	Protein (azurin ISO-2); beta barrel, periplasmic,	97.85
3ay2_A	167	Lipid modified azurin protein; beta sandwich, bact	97.84
1id2_A	106	Amicyanin; beta barrel, type-1 blue copper protein	97.74
2ov0_A	105	Amicyanin; beta-sandwich, electron transport; 0.75	97.72
1iko_P	178	Ephrin-B2; greek KEY, glycosylation, signaling pro	97.7
2ccw_A	129	Azurin II, AZN-2; electron transport (cuproprotein	97.61
2iaa_C	128	Azurin; quinoprotein, tryptophan tryptophylquinone	97.53
1nwp_A	128	Azurin; electron transport, cupredoxin, electron t	97.45
3d12_B	141	Ephrin-B3; beta propeller, protein-receptor comple	97.13
1iby_A	112	Nitrosocyanin; RED copper, cupredoxin, beta hairpi	96.81
2x11_B	177	Ephrin-A5; receptor-signaling protein complex, dev	96.64
2wo3_B	157	Ephrin-A2; transferase-signaling protein complex,	96.29
1shx_A	138	Ephrin-A5; ephrin signaling, hormone-growth factor	96.18
2cua_A	135	Protein (CUA); CUA center, electron transport; 1.6	96.08
2vsm_B	140	Ephrin-B2; developmental protein, henipavirus, neu	96.07
3czu_B	182	Ephrin-A1; ATP-binding, kinase, nucleotide-binding	95.93
3s8f_B	168	Cytochrome C oxidase subunit 2; complex IV, respir	95.17
3fsa_A	125	Azurin; copper, cupredoxin fold, metal-binding, pr	94.45
2dv6_A	447	Nitrite reductase; electron transfer, reduction, d	94.37
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	93.79
3l6w_A	491	Hemocyanin 1; cupredoxin domain, copper-binding pr	91.53
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	91.42
3hei_B	132	Ephrin-A1; EPH receptor tyrosine kinase, cell memb	91.32
1mzy_A	333	Copper-containing nitrite reductase; mutant M182T,	83.51
1oe1_A	336	Dissimilatory copper-containing nitrite reductase;	83.32
1kbv_A	327	ANIA, major outer membrane protein PAN 1; ANIA[NO2	80.7

>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1

Probab=100.00  E-value=4.5e-41  Score=229.71  Aligned_cols=95  Identities=46%  Similarity=1.072  Sum_probs=92.0

Q ss_pred             EEEEecCCCCCCccccCCCCCCeeeeCCEEEEEeCCCCCeEEEECcCCCCCCCCCCCCcccccCCcEEEeCCcceEEEeC
Q 048131           28 TTFKVGDDGGWVFGVQNWPEGKTFKCGDILEFNYDPQRHNVIIVDQEGHDSCKPASDAKKFQTGKDQIVLNHGKNFFICG  107 (124)
Q Consensus        28 ~~~~VG~~~gW~~~~~~Wa~~~~f~vGD~L~F~y~~~~h~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~l~~G~~yfic~  107 (124)
                      ++|+|||+.||+++|++||++++|++||+|+|+|+++.|+|+||++++|++|++++|+..+++|+++|+|.+|++||||+
T Consensus         1 ~~~~VG~~~GW~~~y~~Wa~~~~f~vGD~L~F~y~~~~hsV~~v~~~~y~~C~~~~~~~~~~~G~~~v~L~~g~~yFic~   80 (96)
T 2cbp_A            1 AVYVVGGSGGWTFNTESWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNTPAGAKVYTSGRDQIKLPKGQSYFICN   80 (96)
T ss_dssp             CEEETTGGGCSCSSCTTTTTTCCBCTTCEEEEECCTTTCCEEEECHHHHHHTCCCTTCEEECSSEEEEECCSEEEEEECC
T ss_pred             CEEEECCcCCCccChhhhccCceEcCCCEEEEEecCCCCEEEEECHHHCCccCCCCCcccccCCCeEEEecCCCEEEEcC
Confidence            37999999999999999999999999999999999999999999999999999999999999999999998899999999


Q ss_pred             CCCCccCCCcEEEEEe
Q 048131          108 VPTHCSDHGMKLEINV  123 (124)
Q Consensus       108 ~~~hC~~~GmKl~I~V  123 (124)
                      +++||+ +||||+|+|
T Consensus        81 ~~~HC~-~Gmkl~I~V   95 (96)
T 2cbp_A           81 FPGHCQ-SGMKIAVNA   95 (96)
T ss_dssp             STTTGG-GTCEEEEEE
T ss_pred             CCCccc-cCCEEEEEE
Confidence            999999 999999998

>1ws8_A Mavicyanin; oxidized form, phytocyanin, cupredoxin, electron transport; 1.60A {Cucurbita pepo} SCOP: b.6.1.1 PDB: 1ws7_A

Probab=100.00  E-value=5e-41  Score=234.28  Aligned_cols=98  Identities=44%  Similarity=0.833  Sum_probs=93.4

Q ss_pred             eeEEEEecCCCCCCcc----ccCCCCCCeeeeCCEEEEEeCCCCCeEEEECcCCCCCCCCCCCCcccccCCcEEEeC-Cc
Q 048131           26 SATTFKVGDDGGWVFG----VQNWPEGKTFKCGDILEFNYDPQRHNVIIVDQEGHDSCKPASDAKKFQTGKDQIVLN-HG  100 (124)
Q Consensus        26 ~a~~~~VG~~~gW~~~----~~~Wa~~~~f~vGD~L~F~y~~~~h~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~l~-~G  100 (124)
                      +|++|+|||+.||+++    |++||++++|++||+|+|+|+++.|+|+||++++|++|+.++|+..+++|+++|+|+ +|
T Consensus         1 ~a~~~~VG~~~GW~~~~~~~Y~~Wa~~~~F~vGD~LvF~y~~~~hsV~~V~~~~y~~C~~~~p~~~~~~G~~~v~L~~~G   80 (109)
T 1ws8_A            1 MATVHKVGDSTGWTTLVPYDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNSSSPAASYTSGADSIPLKRPG   80 (109)
T ss_dssp             CCCEEETTGGGCSCSSSCCCHHHHHHTSCBCTTCEEEEECCTTTCCEEEECHHHHHHTCCSSCSEEECSSEEEEECCSSE
T ss_pred             CCcEEEeCCCCCccCCCCcChhHhhcCCcCcCCCEEEEeecCCCceEEEEChHHCCcccCCCcccccCCCCEEEEECCCc
Confidence            3688999999999975    689999999999999999999999999999999999999999999999999999998 99


Q ss_pred             ceEEEeCCCCCccCCCcEEEEEeC
Q 048131          101 KNFFICGVPTHCSDHGMKLEINVE  124 (124)
Q Consensus       101 ~~yfic~~~~hC~~~GmKl~I~V~  124 (124)
                      ++||||++++||+ +||||+|+|.
T Consensus        81 ~~yFic~~~gHC~-~GmKl~I~V~  103 (109)
T 1ws8_A           81 TFYFLCGIPGHCQ-LGQKVEIKVD  103 (109)
T ss_dssp             EEEEECCSTTTTT-TTCEEEEEEC
T ss_pred             CEEEECCCCCccc-CCCEEEEEEc
Confidence            9999999999999 9999999984

>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1

Probab=100.00  E-value=1.2e-39  Score=235.74  Aligned_cols=98  Identities=37%  Similarity=0.718  Sum_probs=93.9

Q ss_pred             eeEEEEecCCCCCCcc-----ccCCCCCCeeeeCCEEEEEeCCCCCeEEEE-CcCCCCCCCCCCCCcccccCCcEEEe-C
Q 048131           26 SATTFKVGDDGGWVFG-----VQNWPEGKTFKCGDILEFNYDPQRHNVIIV-DQEGHDSCKPASDAKKFQTGKDQIVL-N   98 (124)
Q Consensus        26 ~a~~~~VG~~~gW~~~-----~~~Wa~~~~f~vGD~L~F~y~~~~h~V~~V-~~~~y~~C~~~~~~~~~~~G~~~v~l-~   98 (124)
                      +|++|+|||+.||+++     |++||++|+|++||+|+|+|+++.|+|+|| ++++|+.|+.++++..+++|+++|+| +
T Consensus         2 ~a~~~~VGg~~GW~~~~~~~~Y~~Wa~~~~F~vGD~LvF~y~~~~HsV~~V~~~~~y~~C~~s~p~~~~~~G~~~v~L~~   81 (138)
T 1jer_A            2 QSTVHIVGDNTGWSVPSSPNFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACNFVNSDNDVERTSPVIERLD   81 (138)
T ss_dssp             CCCEEETTGGGCSSCCSSTTHHHHHHHTCCEETTCEEEECCCTTTCCCEEESCHHHHHHTCCTTSCCCCCCCSCEEEECC
T ss_pred             CceEEEECCcCcCcCCCCccchhhhhcCCcCcCCCEEEEeecCCCceEEEeCchhhcCccCCCCccccccCCCeEEEecc
Confidence            5789999999999987     789999999999999999999999999999 99999999999999999999999999 8


Q ss_pred             -CcceEEEeCCCCCccCCCcEEEEEeC
Q 048131           99 -HGKNFFICGVPTHCSDHGMKLEINVE  124 (124)
Q Consensus        99 -~G~~yfic~~~~hC~~~GmKl~I~V~  124 (124)
                       +|++||||++++||+ +||||+|+|.
T Consensus        82 ~~G~~YFicg~~gHC~-~GmKl~I~V~  107 (138)
T 1jer_A           82 ELGMHYFVCTVGTHCS-NGQKLSINVV  107 (138)
T ss_dssp             SSEEEEEECCSTTTGG-GTCEEEEEEE
T ss_pred             CCcCEEEEcCCCCccc-cCCEEEEEEc
Confidence             899999999999999 9999999983

>1x9u_A Umecyanin; cupredoxin, phytocyanin, copper binding site, beta barrel, electron transport; 1.80A {Armoracia rusticana} PDB: 1x9r_A

Probab=100.00  E-value=9.4e-39  Score=224.98  Aligned_cols=96  Identities=36%  Similarity=0.717  Sum_probs=91.2

Q ss_pred             EEEEecCCCCCCcc-----ccCCCCCCeeeeCCEEEEEeCCCCCeEEEECcCCCCCCCCCCCCcccccCCcEEEeC-Ccc
Q 048131           28 TTFKVGDDGGWVFG-----VQNWPEGKTFKCGDILEFNYDPQRHNVIIVDQEGHDSCKPASDAKKFQTGKDQIVLN-HGK  101 (124)
Q Consensus        28 ~~~~VG~~~gW~~~-----~~~Wa~~~~f~vGD~L~F~y~~~~h~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~l~-~G~  101 (124)
                      ++|+|||+.||+++     |++||++++|++||+|+|+|.++.|+|+||++++|++|+.++|+..+++|+++|+|+ +|+
T Consensus         2 ~~~~VG~~~GW~~~~~~~~Y~~Wa~~~~f~vGD~L~F~y~~~~HsV~~V~~~~y~~C~~~~~~~~~~~G~~~v~l~~~G~   81 (116)
T 1x9u_A            2 EDYDVGGDMEWKRPSDPKFYITWATGKTFRVGDELEFDFAAGMHDVAVVTKDAFDNCKKENPISHMTTPPVKIMLNTTGP   81 (116)
T ss_dssp             CEEETTGGGCSSCCSSTTHHHHHHTTCCEETTCEEEECCCTTTCCEEEECHHHHHTTCCSSCSEEECSSSEEEECCSCEE
T ss_pred             eEEEECCcCcCcCCCCCcchhhccccccCcCCCEEEEEecCCCCeEEEEChhhcCccCCCCCccccCCCCeEEEECCCCC
Confidence            47999999999863     789999999999999999999999999999999999999999999999999999999 999


Q ss_pred             eEEEeCCCCCccCCCcEEEE-EeC
Q 048131          102 NFFICGVPTHCSDHGMKLEI-NVE  124 (124)
Q Consensus       102 ~yfic~~~~hC~~~GmKl~I-~V~  124 (124)
                      +||||++++||+ +||||+| +|+
T Consensus        82 ~yFic~~~~HC~-~Gmkl~In~V~  104 (116)
T 1x9u_A           82 QYYICTVGDHCR-VGQKLSINVVG  104 (116)
T ss_dssp             EEEECCSTTTTT-TTCEEEEEEEC
T ss_pred             EEEECCCCCccc-cCCEEEEEEEC
Confidence            999999999999 9999999 774

>1f56_A Plantacyanin; cupredoxin, copper protein, beta barrel, plant protein; 2.05A {Spinacia oleracea} SCOP: b.6.1.1

Probab=100.00  E-value=3.2e-37  Score=208.87  Aligned_cols=91  Identities=41%  Similarity=0.905  Sum_probs=87.1

Q ss_pred             EEEEecCCCCCCccccCCCCCCeeeeCCEEEEEeCCCCCeEEEECcCCCCCCCCCCCCcccccCCcEEEeCCcceEEEeC
Q 048131           28 TTFKVGDDGGWVFGVQNWPEGKTFKCGDILEFNYDPQRHNVIIVDQEGHDSCKPASDAKKFQTGKDQIVLNHGKNFFICG  107 (124)
Q Consensus        28 ~~~~VG~~~gW~~~~~~Wa~~~~f~vGD~L~F~y~~~~h~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~l~~G~~yfic~  107 (124)
                      ++|+|    ||+++ ++||++++|++||+|+|+|+++.|+|+||++++|++|+.++|+..+++|+++|+|++|++||||+
T Consensus         1 ~~y~V----gW~~~-~~Wa~~~~f~vGD~L~F~y~~~~hsV~~v~~~~y~~C~~~~~~~~~~~G~~~v~L~~g~~yFic~   75 (91)
T 1f56_A            1 AVYNI----GWSFN-VNGARGKSFRAGDVLVFKYIKGQHNVVAVNGRGYASCSAPRGARTYSSGQDRIKLTRGQNYFICS   75 (91)
T ss_dssp             CEEEE----ECSSS-CBSCTTCCBCTTCEEEEECCBTTBCEEEECHHHHHTTCCCTTCEEECSSEEEEECCSEEEEEECC
T ss_pred             CEEEE----eCCCC-CcCcCCccEeCCCEEEEEccCCCCeEEEECHHHcCCcCCCCCcccccCCCcEEEeCCCCeEEEcC
Confidence            36888    89998 99999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccCCCcEEEEEeC
Q 048131          108 VPTHCSDHGMKLEINVE  124 (124)
Q Consensus       108 ~~~hC~~~GmKl~I~V~  124 (124)
                      +++||+ +||||+|+|.
T Consensus        76 ~~~HC~-~Gmkl~I~v~   91 (91)
T 1f56_A           76 FPGHCG-GGMKIAINAK   91 (91)
T ss_dssp             STTTTT-TTCEEEEEEC
T ss_pred             CCCccc-cCCEEEEEEC
Confidence            999999 9999999984

>1qhq_A Protein (auracyanin); electron transfer, cupredoxin, blue copper protein, azurin-L thermophIle; 1.55A {Chloroflexus aurantiacus} SCOP: b.6.1.1 PDB: 1ov8_A

Probab=99.30  E-value=7e-12  Score=88.46  Aligned_cols=96  Identities=18%  Similarity=0.304  Sum_probs=65.3

Q ss_pred             cceeEEEEecCC-CCCCccccCCCCCCeeeeCCEEEEEeCC-----CCCeEEEECcC-CCCC--------------C---
Q 048131           24 IGSATTFKVGDD-GGWVFGVQNWPEGKTFKCGDILEFNYDP-----QRHNVIIVDQE-GHDS--------------C---   79 (124)
Q Consensus        24 ~a~a~~~~VG~~-~gW~~~~~~Wa~~~~f~vGD~L~F~y~~-----~~h~V~~V~~~-~y~~--------------C---   79 (124)
                      .+...++.|+-. .+|.+.++    ..+++.||++.|.+.+     ..|++...+.. ++..              .   
T Consensus        13 ~~~~~~v~V~~~~~~~~F~P~----~i~v~~G~tV~~~~~N~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (140)
T 1qhq_A           13 ETPAQTVEVRAAPDALAFAQT----SLSLPANTVVRLDFVNQNNLGVQHNWVLVNGGDDVAAAVNTAAQNNADALFVPPP   88 (140)
T ss_dssp             SCCSEEEEEEBCSSSSSBSCS----EEEEETTCEEEEEEEECCSSCCCBCCEEESSSHHHHHHHHHHHHTCGGGTTCCCT
T ss_pred             cCCCEEEEEEEeCCCceEeCC----eEEECCCCEEEEEEECCCCCCCceeEEEeccCcchhhhhhhhhhhcccccccCcc
Confidence            344567777753 45887753    5799999999988865     47999887422 1110              0   


Q ss_pred             CCC------CCCcccccCCcEEEeC-CcceEEEeCCCCCccCCCcEEEEEeC
Q 048131           80 KPA------SDAKKFQTGKDQIVLN-HGKNFFICGVPTHCSDHGMKLEINVE  124 (124)
Q Consensus        80 ~~~------~~~~~~~~G~~~v~l~-~G~~yfic~~~~hC~~~GmKl~I~V~  124 (124)
                      +..      ..+....++..+|+++ ||.|||+|++++||. .|||..|+|+
T Consensus        89 ~~~~~~~~t~~l~pG~~~~~~~~~~~~G~y~f~C~~~~H~~-~GM~g~i~V~  139 (140)
T 1qhq_A           89 DTPNALAWTAMLNAGESGSVTFRTPAPGTYLYICTFPGHYL-AGMKGTLTVT  139 (140)
T ss_dssp             TCTTEEEECCCBCTTEEEEEEEECCSSEEEEEECCSTTTTT-TTCEEEEEEE
T ss_pred             ccccccccceeeCCCceeEEEEEeCCCeeEEEEeCCcCHhh-cCCEEEEEEc
Confidence            000      1112223344567777 999999999999999 9999999984

>2cal_A Rusticyanin; iron respiratory electron transport chain, blue protein, electron transport, metal- binding, periplasmic; 1.10A {Thiobacillus ferrooxidans} PDB: 1cur_A 1gy2_A 1a3z_A 1e30_A 1gy1_A 1rcy_A 1a8z_A 2cak_A

Probab=99.23  E-value=2.7e-11  Score=87.80  Aligned_cols=76  Identities=14%  Similarity=0.234  Sum_probs=57.7

Q ss_pred             CCeeeeCCEEEEEeCCC----CCeEEEEC-cCCCCCCCCCCCCc-------ccccC---CcEEEe--CCcceEEEeCCCC
Q 048131           48 GKTFKCGDILEFNYDPQ----RHNVIIVD-QEGHDSCKPASDAK-------KFQTG---KDQIVL--NHGKNFFICGVPT  110 (124)
Q Consensus        48 ~~~f~vGD~L~F~y~~~----~h~V~~V~-~~~y~~C~~~~~~~-------~~~~G---~~~v~l--~~G~~yfic~~~~  110 (124)
                      ..++++||+|+|++.+.    .|++..++ ...|+.|....++.       ....|   ..++++  .||+|||+|+.++
T Consensus        62 ~i~V~~GD~V~~~~tN~~~~~~H~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~PG~sgt~t~tft~~pGtY~y~C~~~g  141 (154)
T 2cal_A           62 TLEIPAGATVDVTFINTNKGFGHSFDITKKGPPYAVMPVIDPIVAGTGFSPVPKDGKFGYTDFTWHPTAGTYYYVCQIPG  141 (154)
T ss_dssp             EEEECTTCEEEEEEEECCTTCCCCCEEESCCSCCCSSCCCCSEEEEBCCCCCCBTTBEEEEEEEECCCSEEEEEECCSTT
T ss_pred             EEEEeCCCEEEEEEEcCCCCeeeEEEEeecCcchhccccccccccccccccccCCCCceEEEEEEEECCceEEEECCCCC
Confidence            46889999999999742    69999994 56787786554321       12233   345544  4899999999999


Q ss_pred             CccCCCcEEEEEeC
Q 048131          111 HCSDHGMKLEINVE  124 (124)
Q Consensus       111 hC~~~GmKl~I~V~  124 (124)
                      ||+ .||+..|.|+
T Consensus       142 H~~-~GM~G~IiV~  154 (154)
T 2cal_A          142 MAA-TGMFGKIVVK  154 (154)
T ss_dssp             TGG-GTCEEEEEEC
T ss_pred             HHH-CCCEEEEEEC
Confidence            999 9999999986

>1bxv_A Plastocyanin; copper protein, electron transfer; 1.80A {Synechococcus elongatus} SCOP: b.6.1.1 PDB: 1bxu_A

Probab=99.17  E-value=7.3e-11  Score=76.73  Aligned_cols=84  Identities=24%  Similarity=0.401  Sum_probs=60.0

Q ss_pred             EEEecCC-CCCCccccCCCCCCeeeeCCEEEEEeCC-CCCeEEEECcCCCCCCCCCCCCcccccC-CcEEEeC-CcceEE
Q 048131           29 TFKVGDD-GGWVFGVQNWPEGKTFKCGDILEFNYDP-QRHNVIIVDQEGHDSCKPASDAKKFQTG-KDQIVLN-HGKNFF  104 (124)
Q Consensus        29 ~~~VG~~-~gW~~~~~~Wa~~~~f~vGD~L~F~y~~-~~h~V~~V~~~~y~~C~~~~~~~~~~~G-~~~v~l~-~G~~yf  104 (124)
                      +..+|++ .+|.+.++    ..++++||+|.|.+.. ..|+|...+...+.     ........| ..+++++ ||+|+|
T Consensus         4 ~v~~~~~~~~~~f~P~----~i~v~~Gd~V~~~n~~~~~H~v~~~~~~~~~-----~~~~~~~~g~~~~~~f~~~G~y~~   74 (91)
T 1bxv_A            4 AIKMGADNGMLAFEPS----TIEIQAGDTVQWVNNKLAPHNVVVEGQPELS-----HKDLAFSPGETFEATFSEPGTYTY   74 (91)
T ss_dssp             EEEESCTTSCSSEESS----EEEECTTCEEEEEECSSCCEEEEETTCGGGC-----EEEEECSTTCEEEEECCSCEEEEE
T ss_pred             EEEEecCCCccEEeCC----EEEECCCCEEEEEECCCCCcEEEEeCCCccC-----cccceeCCCCEEEEEeCCCEEEEE
Confidence            4456653 56776654    4789999999999874 57999876432221     011123334 3477888 999999


Q ss_pred             EeCCCCCccCCCcEEEEEeC
Q 048131          105 ICGVPTHCSDHGMKLEINVE  124 (124)
Q Consensus       105 ic~~~~hC~~~GmKl~I~V~  124 (124)
                      +|.  .||. .||+..|.|+
T Consensus        75 ~C~--~H~~-~gM~g~i~V~   91 (91)
T 1bxv_A           75 YCE--PHRG-AGMVGKIVVQ   91 (91)
T ss_dssp             ECT--TTGG-GTCEEEEEEC
T ss_pred             EeC--CCcc-CCCEEEEEEC
Confidence            999  7999 9999999996

>1iuz_A Plastocyanin; electron transport; 1.60A {Ulva pertusa} SCOP: b.6.1.1 PDB: 7pcy_A

Probab=98.93  E-value=2.3e-09  Score=71.16  Aligned_cols=89  Identities=26%  Similarity=0.390  Sum_probs=59.3

Q ss_pred             EEEecC-CCCCCccccCCCCCCeeeeCCEEEEEeCC-CCCeEEEECc---CCCCCCCCCCCCcccccCCc-EEEeC-Ccc
Q 048131           29 TFKVGD-DGGWVFGVQNWPEGKTFKCGDILEFNYDP-QRHNVIIVDQ---EGHDSCKPASDAKKFQTGKD-QIVLN-HGK  101 (124)
Q Consensus        29 ~~~VG~-~~gW~~~~~~Wa~~~~f~vGD~L~F~y~~-~~h~V~~V~~---~~y~~C~~~~~~~~~~~G~~-~v~l~-~G~  101 (124)
                      +..+|+ +.++.+.|+    ..++++||+|.|.+.. ..|+|...+.   ++++.+..+........|.+ +++++ ||.
T Consensus         3 ~V~m~~~~~~~~F~P~----~i~v~~GdtV~~~n~~~~~H~v~~~~~~~p~g~~~~~~~~~~~~~~~g~~~~~tf~~~G~   78 (98)
T 1iuz_A            3 IVKLGGDDGSLAFVPS----KISVAAGEAIEFVNNAGFPHNIVFDEDAVPAGVDADAISYDDYLNSKGETVVRKLSTPGV   78 (98)
T ss_dssp             EEEESCTTSCCSEESS----EEEECTTCEEEEEECSSCCEEEEECTTSSCTTCCHHHHCEEEEECSTTCEEEEECCSCEE
T ss_pred             EEEEecCCCCcEEeCC----EEEECCCCEEEEEECCCCCEEEEEeCCCCccccccccccccccccCCCCEEEEEcCCCEE
Confidence            344454 456776654    4789999999999876 3899987531   12222111100012334443 67888 999


Q ss_pred             eEEEeCCCCCccCCCcEEEEEeC
Q 048131          102 NFFICGVPTHCSDHGMKLEINVE  124 (124)
Q Consensus       102 ~yfic~~~~hC~~~GmKl~I~V~  124 (124)
                      |+|+|..  ||. .||+..|.|+
T Consensus        79 y~y~C~~--H~~-~gM~G~I~V~   98 (98)
T 1iuz_A           79 YGVYCEP--HAG-AGMKMTITVQ   98 (98)
T ss_dssp             EEEECTT--TGG-GTCEEEEEEC
T ss_pred             EEEEchh--hcc-CCCEEEEEEC
Confidence            9999995  999 9999999986

>2aan_A Auracyanin A; cupredoxin fold, electron transport; 1.85A {Chloroflexus aurantiacus}

Probab=98.88  E-value=1.9e-08  Score=70.69  Aligned_cols=94  Identities=18%  Similarity=0.303  Sum_probs=63.5

Q ss_pred             ceeEEEEecC-CCCCCccccCCCCCCeeeeCCEEEEEeCCC----CCeEEEECcC------------------CCCCCCC
Q 048131           25 GSATTFKVGD-DGGWVFGVQNWPEGKTFKCGDILEFNYDPQ----RHNVIIVDQE------------------GHDSCKP   81 (124)
Q Consensus        25 a~a~~~~VG~-~~gW~~~~~~Wa~~~~f~vGD~L~F~y~~~----~h~V~~V~~~------------------~y~~C~~   81 (124)
                      ++..+..||. ..++.+.++    ..++++||++.|.+.+.    .|++...+..                  +|..+..
T Consensus        16 ~~~~~V~v~~~~~~~~F~p~----~i~v~~G~~V~~~~~N~~~~~~H~~~i~~~~~~~~~~~~~~~~~~g~~~~~~p~~~   91 (139)
T 2aan_A           16 SGPVTIEIGSKGEELAFDKT----ELTVSAGQTVTIRFKNNSAVQQHNWILVKGGEAEAANIANAGLSAGPAANYLPADK   91 (139)
T ss_dssp             -CCEEEEEEBCTTSSSBSCS----EEEECTTCEEEEEEECCCSSCCBCCEEESSCHHHHHHHHHHHHHHCGGGTTCCSCC
T ss_pred             CcCEEEEEEecCCccEEcCC----eEEECCCCEEEEEEEeCCCCCCeeEEEeccccccchhhhhhhhcccccccccCccc
Confidence            4445666742 246666553    47899999999888643    6999888532                  5665653


Q ss_pred             CCCC---cccccCCc---EEEeC-CcceEEEeCCCCCccCCCcEEEEEeC
Q 048131           82 ASDA---KKFQTGKD---QIVLN-HGKNFFICGVPTHCSDHGMKLEINVE  124 (124)
Q Consensus        82 ~~~~---~~~~~G~~---~v~l~-~G~~yfic~~~~hC~~~GmKl~I~V~  124 (124)
                      .+..   .....|.+   +|+++ ||+|+|+|.+++||.  ||+..|.|+
T Consensus        92 ~~~~~~t~~l~pGet~~v~f~~~~pG~y~f~C~~~~H~~--GM~G~i~V~  139 (139)
T 2aan_A           92 SNIIAESPLANGNETVEVTFTAPAAGTYLYICTVPGHYP--LMQGKLVVN  139 (139)
T ss_dssp             TTEEEECCCBCTTCEEEEEEECCSSEEEEEECCSTTTTT--TSEEEEEEC
T ss_pred             ccccccccccCCCCEEEEEEECCCCeEEEEEcCCCChHH--cCEEEEEEC
Confidence            3211   12334433   44454 899999999999998  999999986

>1kdj_A Plastocyanin; electron transfer, photosystem, PAI-PAI stacking; 1.70A {Adiantum capillus-veneris} SCOP: b.6.1.1 PDB: 1kdi_A 2bz7_A 2bzc_A

Probab=98.85  E-value=1.2e-08  Score=67.76  Aligned_cols=88  Identities=24%  Similarity=0.305  Sum_probs=58.6

Q ss_pred             EEecC-CCCCCccccCCCCCCeeeeCCEEEEEeCC-CCCeEEEECcCCCC----CCCC----CCCCcccccCC-cEEEeC
Q 048131           30 FKVGD-DGGWVFGVQNWPEGKTFKCGDILEFNYDP-QRHNVIIVDQEGHD----SCKP----ASDAKKFQTGK-DQIVLN   98 (124)
Q Consensus        30 ~~VG~-~~gW~~~~~~Wa~~~~f~vGD~L~F~y~~-~~h~V~~V~~~~y~----~C~~----~~~~~~~~~G~-~~v~l~   98 (124)
                      ..+|. +.++.+.++    ..++++||++.|.+.. ..|++...+.+.++    .+..    +........|. .+++++
T Consensus         3 V~~g~~~~~~~F~P~----~i~v~~G~tV~~~n~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~~~~~tf~   78 (102)
T 1kdj_A            3 VEVGDEVGNFKFYPD----SITVSAGEAVEFTLVGETGHNIVFDIPAGAPGTVASELKAASMDENDLLSEDEPSFKAKVS   78 (102)
T ss_dssp             EEESCTTCCCCEESS----EEEECTTCCEEEEECSSSCBCCEECCCTTCCHHHHHHHHHTSCCTTCCBBTTBCEEEECCC
T ss_pred             EEEecCCCccEEeCC----EEEECCCCEEEEEECCCCCeEEEEeCcccccccccchhhcccccccceecCCCCEEEEEeC
Confidence            45665 345666553    4789999999999875 47999876433321    1110    00011233343 367777


Q ss_pred             -CcceEEEeCCCCCccCCCcEEEEEeC
Q 048131           99 -HGKNFFICGVPTHCSDHGMKLEINVE  124 (124)
Q Consensus        99 -~G~~yfic~~~~hC~~~GmKl~I~V~  124 (124)
                       ||+|.|+|.  .||. .||+..|.|+
T Consensus        79 ~~G~y~y~C~--~H~~-~gM~G~i~V~  102 (102)
T 1kdj_A           79 TPGTYTFYCT--PHKS-ANMKGTLTVK  102 (102)
T ss_dssp             SCEEEEEECS--TTGG-GTCEEEEEEC
T ss_pred             CCeEEEEEeC--CCcc-cCCeEEEEEC
Confidence             999999999  8999 9999999996

>1pmy_A Pseudoazurin; electron transfer(cuproprotein); 1.50A {Methylobacterium extorquens} SCOP: b.6.1.1

Probab=98.84  E-value=1e-08  Score=71.78  Aligned_cols=80  Identities=26%  Similarity=0.354  Sum_probs=56.0

Q ss_pred             cCCCCCCccccCCCCCCeeeeCCEEEEEeCCCCCeEEEECcCCCCCCCCCCCC-cccccCC-cEEEeC-CcceEEEeCCC
Q 048131           33 GDDGGWVFGVQNWPEGKTFKCGDILEFNYDPQRHNVIIVDQEGHDSCKPASDA-KKFQTGK-DQIVLN-HGKNFFICGVP  109 (124)
Q Consensus        33 G~~~gW~~~~~~Wa~~~~f~vGD~L~F~y~~~~h~V~~V~~~~y~~C~~~~~~-~~~~~G~-~~v~l~-~G~~yfic~~~  109 (124)
                      |++.+..+.|+    ..++++||+|.|.++...|+|...+     .|.+.... .....|. .+++++ ||.|.|+|+  
T Consensus        11 g~~g~~~F~P~----~i~V~~GdtV~f~n~~~~H~v~~~~-----~~~p~~~~~~~~~pG~t~~~tF~~~G~y~y~C~--   79 (123)
T 1pmy_A           11 GPGGMMVFDPA----LVRLKPGDSIKFLPTDKGHNVETIK-----GMAPDGADYVKTTVGQEAVVKFDKEGVYGFKCA--   79 (123)
T ss_dssp             ETTEEEEEESS----EEEECTTCEEEEECSSSSCCCEECT-----TSSCTTCCCCBCCTTSCEEEECCSCEEEEEECS--
T ss_pred             cCCCCceEeCC----EEEECCCCEEEEEECCCCcEEEEec-----ccCCCCccceecCCCCEEEEEeCCCeEEEEEeC--
Confidence            54444555553    4789999999999987789998752     12222111 1112233 378888 999999998  


Q ss_pred             CCccCCCcEEEEEeC
Q 048131          110 THCSDHGMKLEINVE  124 (124)
Q Consensus       110 ~hC~~~GmKl~I~V~  124 (124)
                      .||. .||+..|+|.
T Consensus        80 ~H~~-~gM~G~I~V~   93 (123)
T 1pmy_A           80 PHYM-MGMVALVVVG   93 (123)
T ss_dssp             TTTT-TTCEEEEEES
T ss_pred             Cccc-cCCEEEEEEc
Confidence            4999 9999999984

>2plt_A Plastocyanin; electron transport; 1.50A {Chlamydomonas reinhardtii} SCOP: b.6.1.1

Probab=98.83  E-value=5.5e-09  Score=68.78  Aligned_cols=89  Identities=25%  Similarity=0.390  Sum_probs=59.0

Q ss_pred             EEEecC-CCCCCccccCCCCCCeeeeCCEEEEEeCCC-CCeEEEECc---CCCCCCCCCCCCcccccCCc-EEEeC-Ccc
Q 048131           29 TFKVGD-DGGWVFGVQNWPEGKTFKCGDILEFNYDPQ-RHNVIIVDQ---EGHDSCKPASDAKKFQTGKD-QIVLN-HGK  101 (124)
Q Consensus        29 ~~~VG~-~~gW~~~~~~Wa~~~~f~vGD~L~F~y~~~-~h~V~~V~~---~~y~~C~~~~~~~~~~~G~~-~v~l~-~G~  101 (124)
                      +..+|+ +.++.+.++    ..++++||++.|.+... .|++...+.   ++++.+..+........|.+ +++++ ||+
T Consensus         3 ~V~m~~~~~~~~F~P~----~i~v~~G~~V~~~n~~~~~H~~~~~~~~~p~~~~~~~~~~~~~~~~pG~~~~~tf~~~G~   78 (98)
T 2plt_A            3 TVKLGADSGALEFVPK----TLTIKSGETVNFVNNAGFPHNIVFDEDAIPSGVNADAISRDDYLNAPGETYSVKLTAAGE   78 (98)
T ss_dssp             EEEESCTTCCSSEESS----EEEECTTCEEEEEECSSCCEEEEECGGGSCTTCCHHHHCEEEEECSTTCEEEEECCSCEE
T ss_pred             EEEEecCCCCceEeCC----EEEECCCCEEEEEECCCCceEEEEeCCCCCCccccccccccceecCCCCEEEEEeCCCeE
Confidence            445664 455776653    37899999999988764 799987532   12221111100112333443 67888 999


Q ss_pred             eEEEeCCCCCccCCCcEEEEEeC
Q 048131          102 NFFICGVPTHCSDHGMKLEINVE  124 (124)
Q Consensus       102 ~yfic~~~~hC~~~GmKl~I~V~  124 (124)
                      |.|+|.  .||+ .||+..|.|+
T Consensus        79 y~y~C~--~H~~-~gM~G~i~V~   98 (98)
T 2plt_A           79 YGYYCE--PHQG-AGMVGKIIVQ   98 (98)
T ss_dssp             EEEECG--GGGG-GTCEEEEEEC
T ss_pred             EEEEcC--Cccc-cCCeEEEEEC
Confidence            999999  6999 9999999986

>2gim_A Plastocyanin; beta sheet, Cu, helix, electron transport; 1.60A {Anabaena variabilis} SCOP: b.6.1.1 PDB: 1fa4_A 1nin_A 1tu2_A* 2cj3_A

Probab=98.82  E-value=3.2e-08  Score=65.92  Aligned_cols=89  Identities=28%  Similarity=0.377  Sum_probs=58.5

Q ss_pred             EEEecCC-CCCCccccCCCCCCeeeeCCEEEEEeCC-CCCeEEEECcCCCC-----CCCCCCCCcccccCC-cEEEe---
Q 048131           29 TFKVGDD-GGWVFGVQNWPEGKTFKCGDILEFNYDP-QRHNVIIVDQEGHD-----SCKPASDAKKFQTGK-DQIVL---   97 (124)
Q Consensus        29 ~~~VG~~-~gW~~~~~~Wa~~~~f~vGD~L~F~y~~-~~h~V~~V~~~~y~-----~C~~~~~~~~~~~G~-~~v~l---   97 (124)
                      +..+|.+ .++.+.++    ..++++||++.|.+.. ..|++...+....+     ....+........|. .++++   
T Consensus         5 ~V~~~~~~~~~~F~P~----~i~v~~Gd~V~~~n~~~~~H~~~~~~~~~~~~~g~~~~~~~~~~~~~~pG~~~~~~f~~~   80 (106)
T 2gim_A            5 TVKLGSDKGLLVFEPA----KLTIKPGDTVEFLNNKVPPHNVVFDAALNPAKSADLAKSLSHKQLLMSPGQSTSTTFPAD   80 (106)
T ss_dssp             EEEESCTTCCSSEESS----EEEECTTCEEEEEECSSSCCCBEECSSSSTTCCHHHHHHHCBCSCCCSTTCEEEEECCTT
T ss_pred             EEEEEecCCcceEcCC----EEEECCCCEEEEEECCCCCceEEEeCCCCcccccccchhccccceeeCCCCEEEEEEecC
Confidence            4556643 56777653    4789999999999775 47999865322110     000000011233343 46777   


Q ss_pred             C-CcceEEEeCCCCCccCCCcEEEEEeC
Q 048131           98 N-HGKNFFICGVPTHCSDHGMKLEINVE  124 (124)
Q Consensus        98 ~-~G~~yfic~~~~hC~~~GmKl~I~V~  124 (124)
                      + ||.|+|+|.  .||+ .||+..|+|+
T Consensus        81 ~~~G~y~y~C~--~H~~-~GM~G~i~V~  105 (106)
T 2gim_A           81 APAGEYTFYCE--PHRG-AGMVGKITVA  105 (106)
T ss_dssp             CCSEEEEEECT--TTGG-GTCEEEEEEC
T ss_pred             CCCceEEEEeC--Chhh-cCcEEEEEEc
Confidence            6 899999999  7999 9999999985

>1paz_A Pseudoazurin precursor; electron transfer(cuproprotein); 1.55A {Alcaligenes faecalis} SCOP: b.6.1.1 PDB: 1pza_A 1pzb_A 1pzc_A 2p80_D 3nyk_A 3paz_A 8paz_A 4paz_A 5paz_A 6paz_A 7paz_A 1py0_A*

Probab=98.82  E-value=1.3e-08  Score=71.20  Aligned_cols=80  Identities=24%  Similarity=0.297  Sum_probs=55.6

Q ss_pred             cCCCCCCccccCCCCCCeeeeCCEEEEEeCCCCCeEEEECcCCCCCCCCCCCC-cccccCC-cEEEeC-CcceEEEeCCC
Q 048131           33 GDDGGWVFGVQNWPEGKTFKCGDILEFNYDPQRHNVIIVDQEGHDSCKPASDA-KKFQTGK-DQIVLN-HGKNFFICGVP  109 (124)
Q Consensus        33 G~~~gW~~~~~~Wa~~~~f~vGD~L~F~y~~~~h~V~~V~~~~y~~C~~~~~~-~~~~~G~-~~v~l~-~G~~yfic~~~  109 (124)
                      |++.+..+.|+    ..++++||+|.|.+....|+|....     .|.+.... .....|. .+++++ ||.|.|+|+  
T Consensus        11 g~~g~~~F~P~----~i~V~~GdtV~f~~~~~~H~v~~~~-----~~~p~~~~~~~~~pG~t~~~tF~~~G~y~y~C~--   79 (123)
T 1paz_A           11 GAEGAMVFEPA----YIKANPGDTVTFIPVDKGHNVESIK-----DMIPEGAEKFKSKINENYVLTVTQPGAYLVKCT--   79 (123)
T ss_dssp             ETTEEEEEESS----EEEECTTCEEEEEESSSSCCCEECT-----TCSCTTCCCCBCCTTCCEEEECCSCEEEEEECT--
T ss_pred             cCCCCceEeCC----EEEECCCCEEEEEECCCCeEEEEec-----ccCCCCccceecCCCCEEEEEeCCCEEEEEEeC--
Confidence            54444555553    4789999999999987789998641     12222111 1111233 378888 999999998  


Q ss_pred             CCccCCCcEEEEEeC
Q 048131          110 THCSDHGMKLEINVE  124 (124)
Q Consensus       110 ~hC~~~GmKl~I~V~  124 (124)
                      .||. .||+..|+|.
T Consensus        80 ~H~~-~gM~G~I~V~   93 (123)
T 1paz_A           80 PHYA-MGMIALIAVG   93 (123)
T ss_dssp             TTGG-GTCEEEEEES
T ss_pred             Cccc-CCCEEEEEEc
Confidence            4999 9999999984

>1plc_A Plastocyanin; electron transport; 1.33A {Populus nigra} SCOP: b.6.1.1 PDB: 1pnc_A 1pnd_A 1tkw_A* 2pcy_A 3pcy_A 4pcy_A 5pcy_A 6pcy_A 1jxg_A 1ag6_A 1ylb_B 2pcf_A* 1oow_A 1tef_A 9pcy_A 1teg_A 1byo_A

Probab=98.81  E-value=2.4e-08  Score=65.96  Aligned_cols=88  Identities=23%  Similarity=0.410  Sum_probs=58.7

Q ss_pred             EEecC-CCCCCccccCCCCCCeeeeCCEEEEEeCCC-CCeEEEECcC---CCCCCCCC--CCCcccccCC-cEEEeC-Cc
Q 048131           30 FKVGD-DGGWVFGVQNWPEGKTFKCGDILEFNYDPQ-RHNVIIVDQE---GHDSCKPA--SDAKKFQTGK-DQIVLN-HG  100 (124)
Q Consensus        30 ~~VG~-~~gW~~~~~~Wa~~~~f~vGD~L~F~y~~~-~h~V~~V~~~---~y~~C~~~--~~~~~~~~G~-~~v~l~-~G  100 (124)
                      ..+|+ +.+..+.|+    ..++++||+|.|.+... .|++...+..   +.+.+..+  ........|. .+++++ ||
T Consensus         3 v~m~~~~~~~~F~P~----~i~v~~G~tV~~~n~~~~~H~v~~~~~~~p~~~~~~~~~~~~~~~~~~~G~~~~~tf~~~G   78 (99)
T 1plc_A            3 VLLGADDGSLAFVPS----EFSISPGEKIVFKNNAGFPHNIVFDEDSIPSGVDASKISMSEEDLLNAKGETFEVALSNKG   78 (99)
T ss_dssp             EEESCTTCCSCEESS----EEEECTTCEEEEEECSSCCBCCEECTTSSCTTCCHHHHCCCTTCCBCSTTCEEEEECCSCE
T ss_pred             EEEecCCCcceEeCC----EEEECCCCEEEEEECCCCceEEEEeCCCCcccccccccccccCccccCCCCEEEEEECCCc
Confidence            34564 445666553    47899999999988864 7999876431   11111100  0001233343 377888 99


Q ss_pred             ceEEEeCCCCCccCCCcEEEEEeC
Q 048131          101 KNFFICGVPTHCSDHGMKLEINVE  124 (124)
Q Consensus       101 ~~yfic~~~~hC~~~GmKl~I~V~  124 (124)
                      +|.|+|.  .||+ .||+..|+|+
T Consensus        79 ~y~~~C~--~H~~-~gM~G~i~V~   99 (99)
T 1plc_A           79 EYSFYCS--PHQG-AGMVGKVTVN   99 (99)
T ss_dssp             EEEEECG--GGTT-TTCEEEEEEC
T ss_pred             eEEEEcC--CCcc-cCCEEEEEEC
Confidence            9999999  7999 9999999986

>1b3i_A PETE protein, protein (plastocyanin); electron transport, type I copper protein, photosynthesis; NMR {Prochlorothrix hollandica} SCOP: b.6.1.1 PDB: 2b3i_A 2jxm_A*

Probab=98.75  E-value=3.7e-08  Score=64.74  Aligned_cols=87  Identities=25%  Similarity=0.358  Sum_probs=58.1

Q ss_pred             EEEecCC-CCCCccccCCCCCCeeeeCCEEEEEeCC-CCCeEEEECcCC---CCCCCCCCCCcccccC-CcEEEeC-Ccc
Q 048131           29 TFKVGDD-GGWVFGVQNWPEGKTFKCGDILEFNYDP-QRHNVIIVDQEG---HDSCKPASDAKKFQTG-KDQIVLN-HGK  101 (124)
Q Consensus        29 ~~~VG~~-~gW~~~~~~Wa~~~~f~vGD~L~F~y~~-~~h~V~~V~~~~---y~~C~~~~~~~~~~~G-~~~v~l~-~G~  101 (124)
                      +..+|++ .++.+.++    ..++++||++.|.+.. ..|++...+...   .+.+....  .....| ..+++++ ||.
T Consensus         4 ~V~~~~~~~~~~F~P~----~i~v~~G~~V~~~n~~~~~H~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~tf~~~G~   77 (97)
T 1b3i_A            4 QIKMGTDKYAPLYEPK----ALSISAGDTVEFVMNKVGPHNVIFDKVPAGESAPALSNTK--LAIAPGSFYSVTLGTPGT   77 (97)
T ss_dssp             EEEEEETTTEEEEESS----EEEECTTCEEEEEECSSCCCCBEEEECCTTSCHHHHCBCC--CCCSCSCCEEEECCSCSE
T ss_pred             EEEEeccCCccEEeCC----EEEECCCCEEEEEECCCCCeEEEEeCCCCccccccccccc--eecCCCCEEEEEeCCCeE
Confidence            3445543 45665553    4789999999999875 379998763221   00011111  122333 3477888 999


Q ss_pred             eEEEeCCCCCccCCCcEEEEEeC
Q 048131          102 NFFICGVPTHCSDHGMKLEINVE  124 (124)
Q Consensus       102 ~yfic~~~~hC~~~GmKl~I~V~  124 (124)
                      |.|+|.  .||+ .||+..|.|+
T Consensus        78 y~y~C~--~H~~-~gM~G~i~V~   97 (97)
T 1b3i_A           78 YSFYCT--PHRG-AGMVGTITVE   97 (97)
T ss_dssp             EEEECS--STTT-TTCEEEEEEC
T ss_pred             EEEEcc--Chhh-cCCEEEEEEC
Confidence            999999  8999 9999999986

>3ef4_A Pseudoazurin, blue copper protein; electron transfer, electron transport; HET: PO4; 1.18A {Hyphomicrobium denitrificans} SCOP: b.6.1.0

Probab=98.74  E-value=2.6e-08  Score=70.12  Aligned_cols=81  Identities=25%  Similarity=0.268  Sum_probs=57.9

Q ss_pred             ecCCC-CCCccccCCCCCCeeeeCCEEEEEeCCCCCeEEEECcCCCCCCCCCCCC-cccccCC-cEEEeC-CcceEEEeC
Q 048131           32 VGDDG-GWVFGVQNWPEGKTFKCGDILEFNYDPQRHNVIIVDQEGHDSCKPASDA-KKFQTGK-DQIVLN-HGKNFFICG  107 (124)
Q Consensus        32 VG~~~-gW~~~~~~Wa~~~~f~vGD~L~F~y~~~~h~V~~V~~~~y~~C~~~~~~-~~~~~G~-~~v~l~-~G~~yfic~  107 (124)
                      +|++. ++.+.|+    ..++++||++.|.++...|+|...+.     +.+.+.. .....|. .+++++ ||.|.|+|.
T Consensus        10 ~g~~G~~~~F~P~----~i~V~~GDTV~f~n~~~~Hnv~~~~~-----~~p~g~~~~~~~pg~t~s~TF~~~G~y~Y~C~   80 (124)
T 3ef4_A           10 KDDAGNTMVFQPG----FVKVEAGDTVKFVPTDKSHNAESVRE-----VWPEGVAPVKGGFSKEVVFNAEKEGLYVLKCA   80 (124)
T ss_dssp             ECTTSCEEEEESS----EEEECTTCEEEEECSSSSCCCEECTT-----TSCTTSCCCBCCTTCCEEEECCSSEEEEEECT
T ss_pred             cCCCCceeEEeCC----EEEECCCCEEEEEECCCCccEEEeCC-----cCCCCccccccCCCCEEEEEeCCCeEEEEEcC
Confidence            45443 3777764    47899999999999988899987532     2222211 1122333 478888 999999998


Q ss_pred             CCCCccCCCcEEEEEeC
Q 048131          108 VPTHCSDHGMKLEINVE  124 (124)
Q Consensus       108 ~~~hC~~~GmKl~I~V~  124 (124)
                        .||. .||+..|+|.
T Consensus        81 --~H~~-~GM~G~I~V~   94 (124)
T 3ef4_A           81 --PHYG-MGMVVLVQVG   94 (124)
T ss_dssp             --TTGG-GTCEEEEEES
T ss_pred             --CCCc-CCCEEEEEEC
Confidence              5999 9999999984

>3erx_A Pseudoazurin; copper protein, high-resolution, E transport, metal-binding, transport; 1.25A {Paracoccus pantotrophus} SCOP: b.6.1.1 PDB: 1adw_A

Probab=98.72  E-value=1.7e-08  Score=70.71  Aligned_cols=76  Identities=21%  Similarity=0.229  Sum_probs=54.3

Q ss_pred             CCCccccCCCCCCeeeeCCEEEEEeCCCCCeEEEECcCCCCCCCCCCCC-cccccC-CcEEEeC-CcceEEEeCCCCCcc
Q 048131           37 GWVFGVQNWPEGKTFKCGDILEFNYDPQRHNVIIVDQEGHDSCKPASDA-KKFQTG-KDQIVLN-HGKNFFICGVPTHCS  113 (124)
Q Consensus        37 gW~~~~~~Wa~~~~f~vGD~L~F~y~~~~h~V~~V~~~~y~~C~~~~~~-~~~~~G-~~~v~l~-~G~~yfic~~~~hC~  113 (124)
                      ...+.|+    ..++++||++.|.+....|+|...+.     +.+.+.. .....| ..+++++ ||.|+|+|.  .||.
T Consensus        15 ~~~F~P~----~i~V~~GdtV~f~~~~~~H~v~~~~~-----~~P~g~~~f~~~pg~t~s~TF~~pG~y~y~C~--~H~~   83 (123)
T 3erx_A           15 AMVFEPA----FVRAEPGDVINFVPTDKSHNVEAIKE-----ILPEGVESFKSKINESYTLTVTEPGLYGVKCT--PHFG   83 (123)
T ss_dssp             EEEEESS----EEEECTTEEEEEEESSTTCCCEECTT-----SSCTTCCCCBCCTTCCEEEEECSCEEEEEECG--GGTT
T ss_pred             cEeEeCC----EEEECCCCEEEEEECCCCceEEEcCC-----cCCCCccceecCCCCEEEEEeCCCeEEEEEeC--CCCc
Confidence            3555553    47899999999999977899987421     2222111 011123 3478888 999999999  6999


Q ss_pred             CCCcEEEEEeC
Q 048131          114 DHGMKLEINVE  124 (124)
Q Consensus       114 ~~GmKl~I~V~  124 (124)
                       .||+..|+|+
T Consensus        84 -~GM~G~I~V~   93 (123)
T 3erx_A           84 -MGMVGLVQVG   93 (123)
T ss_dssp             -TTCEEEEEES
T ss_pred             -CCcEEEEEEC
Confidence             9999999985

>3tu6_A Pseudoazurin (blue copper protein); cupredoxins, beta barrel, electron transfer, redox, electron transport; 2.00A {Sinorhizobium meliloti}

Probab=98.69  E-value=4.5e-08  Score=68.97  Aligned_cols=81  Identities=22%  Similarity=0.278  Sum_probs=56.8

Q ss_pred             ecCCC-CCCccccCCCCCCeeeeCCEEEEEeCCCCCeEEEECcCCCCCCCCCCCC-cccccC-CcEEEeC-CcceEEEeC
Q 048131           32 VGDDG-GWVFGVQNWPEGKTFKCGDILEFNYDPQRHNVIIVDQEGHDSCKPASDA-KKFQTG-KDQIVLN-HGKNFFICG  107 (124)
Q Consensus        32 VG~~~-gW~~~~~~Wa~~~~f~vGD~L~F~y~~~~h~V~~V~~~~y~~C~~~~~~-~~~~~G-~~~v~l~-~G~~yfic~  107 (124)
                      +|.+. +..+.|+    ..++++||+|.|.+....|+|...+.     +.+.... .....| ..+++++ ||.|+|+|.
T Consensus        11 ~g~~g~~~~F~P~----~i~V~~GDtVtf~n~~~~H~v~~~~~-----~~P~g~~~f~s~pGet~s~TF~~pG~y~y~C~   81 (127)
T 3tu6_A           11 KAADGRVMAFEPA----VIRAQPGDTVTFVAKDKGHNSALMKG-----GAPEGAETWKGKINEEITVTLSKPGVYMYQCA   81 (127)
T ss_dssp             ECTTSCEEEEESS----EEEECTTCEEEEECSSSSCCCEECTT-----CSCTTCCCCBCCTTCCCEEECCSCEEEEEECT
T ss_pred             cCCCCcccEEeCC----EEEECCCCEEEEEECCCCceEEEccC-----cCCCCccceecCCCCEEEEEeCCCeEEEEEeC
Confidence            46544 4666554    47899999999999977899987532     1111111 011123 3488888 999999999


Q ss_pred             CCCCccCCCcEEEEEeC
Q 048131          108 VPTHCSDHGMKLEINVE  124 (124)
Q Consensus       108 ~~~hC~~~GmKl~I~V~  124 (124)
                        .||. .||+..|.|+
T Consensus        82 --~H~~-~GM~G~I~V~   95 (127)
T 3tu6_A           82 --PHVG-MGMIGAIVVG   95 (127)
T ss_dssp             --TTGG-GTCEEEEEES
T ss_pred             --CCCc-CCcEEEEEEC
Confidence              5999 9999999985

>1byp_A Protein (plastocyanin); electron transfer, photosynthesis, acidic patch, double mutant, electron transport; 1.75A {Silene latifolia subsp} SCOP: b.6.1.1 PDB: 1pla_A 1plb_A

Probab=98.68  E-value=8.1e-08  Score=63.28  Aligned_cols=88  Identities=25%  Similarity=0.438  Sum_probs=58.6

Q ss_pred             EEecC-CCCCCccccCCCCCCeeeeCCEEEEEeCCC-CCeEEEECcC---CCCCCCCC--CCCcccccCC-cEEEeC-Cc
Q 048131           30 FKVGD-DGGWVFGVQNWPEGKTFKCGDILEFNYDPQ-RHNVIIVDQE---GHDSCKPA--SDAKKFQTGK-DQIVLN-HG  100 (124)
Q Consensus        30 ~~VG~-~~gW~~~~~~Wa~~~~f~vGD~L~F~y~~~-~h~V~~V~~~---~y~~C~~~--~~~~~~~~G~-~~v~l~-~G  100 (124)
                      ..+|+ +.+..+.++    ..++++||+|.|.+... .|++...+..   .++.+...  ........|. .+++++ ||
T Consensus         3 V~~~~~~~~~~F~P~----~i~v~~G~tV~~~n~~~~~H~~~~~~~~~p~g~~~~~~~~~~~~~~~~~G~~~~~~f~~~G   78 (99)
T 1byp_A            3 VLLGSSDGGLAFVPS----DLSIASGEKITFKNNAGFPHNDLFDKKEVPAGVDVTKISMPEEDLLNAPGEEYSVTLTEKG   78 (99)
T ss_dssp             EEESCTTSCCSEESS----EEEECTTEEEEEEECSSCCBCCEECTTSSCTTCCHHHHSCCTTCCBCSTTCEEEEEECSCE
T ss_pred             EEEecCCCcceEeCC----EEEECCCCEEEEEECCCCcceEEEeCCCCccccccccccccccceeeCCCCEEEEEeCCCc
Confidence            34554 455666553    46899999999998764 7998875421   12221100  0001233343 377888 99


Q ss_pred             ceEEEeCCCCCccCCCcEEEEEeC
Q 048131          101 KNFFICGVPTHCSDHGMKLEINVE  124 (124)
Q Consensus       101 ~~yfic~~~~hC~~~GmKl~I~V~  124 (124)
                      +|.|+|.  .||+ .||+..|+|+
T Consensus        79 ~y~~~C~--~H~~-~gM~G~i~V~   99 (99)
T 1byp_A           79 TYKFYCA--PHAG-AGMVGKVTVN   99 (99)
T ss_dssp             EEEEECG--GGTT-TTCEEEEEEC
T ss_pred             EEEEEcC--Cccc-cCCEEEEEEC
Confidence            9999999  7999 9999999985

>1pcs_A Plastocyanin; electron transport; 2.15A {Synechocystis SP} SCOP: b.6.1.1 PDB: 1m9w_A 1j5c_A 1j5d_A 1jxd_A 1jxf_A

Probab=98.60  E-value=4.2e-08  Score=64.57  Aligned_cols=89  Identities=25%  Similarity=0.397  Sum_probs=57.5

Q ss_pred             EEEecCC-CCCCccccCCCCCCeeeeCCEEEEEeCC-CCCeEEEECcCC--CCCCCCCCCCcccccCC-cEEEeC-Ccce
Q 048131           29 TFKVGDD-GGWVFGVQNWPEGKTFKCGDILEFNYDP-QRHNVIIVDQEG--HDSCKPASDAKKFQTGK-DQIVLN-HGKN  102 (124)
Q Consensus        29 ~~~VG~~-~gW~~~~~~Wa~~~~f~vGD~L~F~y~~-~~h~V~~V~~~~--y~~C~~~~~~~~~~~G~-~~v~l~-~G~~  102 (124)
                      +..+|.+ .++.+.++    ..++++||++.|.+.. ..|++...+...  -+....+........|. .+++++ ||+|
T Consensus         4 ~V~~~~~~~~~~F~P~----~i~v~~G~~V~~~n~~~~~H~~~~~~~~~pg~~~~~~~~~~~~~~pG~~~~~tf~~~G~y   79 (98)
T 1pcs_A            4 TVKMGSDSGALVFEPS----TVTIKAGEEVKWVNNKLSPHNIVFDADGVPADTAAKLSHKGLLFAAGESFTSTFTEPGTY   79 (98)
T ss_dssp             EEEESCTTSCSSEESS----EEEECTTCEEEEEECSSCCEEEEECCSSSCHHHHHHHCEEEEECSTTCEEEEECCSCEEE
T ss_pred             EEEEecCCCccEEeCC----EEEECCCCEEEEEECCCCCcEEEEeCCCCCccccccccccccccCCCCEEEEEcCCCeEE
Confidence            4455643 56776654    4789999999999875 479988753210  00000000011223343 367778 9999


Q ss_pred             EEEeCCCCCccCCCcEEEEEeC
Q 048131          103 FFICGVPTHCSDHGMKLEINVE  124 (124)
Q Consensus       103 yfic~~~~hC~~~GmKl~I~V~  124 (124)
                      .|+|.  .||. .||+..|.|+
T Consensus        80 ~~~C~--~H~~-~gM~G~i~V~   98 (98)
T 1pcs_A           80 TYYCE--PHRG-AGMVGKVVVE   98 (98)
T ss_dssp             EEECG--GGTT-TTCEEEEEEC
T ss_pred             EEEcC--Cccc-cCCeEEEEEC
Confidence            99999  6999 9999999996

>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A

Probab=98.12  E-value=9.7e-07  Score=58.56  Aligned_cols=65  Identities=20%  Similarity=0.246  Sum_probs=44.2

Q ss_pred             CCeeeeCCEEEEEeCC---CCCeEEEECcCCCCCCCCCCCCcccccCC-c--EEEeC-CcceEEEeCCCCCccCCCcEEE
Q 048131           48 GKTFKCGDILEFNYDP---QRHNVIIVDQEGHDSCKPASDAKKFQTGK-D--QIVLN-HGKNFFICGVPTHCSDHGMKLE  120 (124)
Q Consensus        48 ~~~f~vGD~L~F~y~~---~~h~V~~V~~~~y~~C~~~~~~~~~~~G~-~--~v~l~-~G~~yfic~~~~hC~~~GmKl~  120 (124)
                      ..++++||++.|.+.+   ..|++..-+ ...        ......|. .  .|+++ ||.|.|.|.  .||. .||+..
T Consensus        29 ~i~v~~G~tV~~~~~n~d~~~H~~~~~~-~~~--------~~~~~pg~~~~~~~t~~~~G~Y~y~C~--~H~~-~gM~G~   96 (100)
T 4hci_A           29 VITIPINESTTLLLKNKGKSEHTFTIKK-LGI--------DVVVESGKEKNITVKPKSAGTYELICR--YHLL-KGMEGK   96 (100)
T ss_dssp             EEEECTTSCEEEEEEECSSSCEEEEEGG-GTE--------EEEECTTCEEEEEECCCSCEEEEEECT--TTGG-GTCEEE
T ss_pred             EEEECCCCEEEEEEEcCCCceEEEEEec-CCc--------ceeecCCcceeEEEecccCceEEEECc--cccC-CCCEEE
Confidence            4799999999998753   247765421 111        01122232 2  45556 899999997  5999 999999


Q ss_pred             EEeC
Q 048131          121 INVE  124 (124)
Q Consensus       121 I~V~  124 (124)
                      |.||
T Consensus        97 i~Ve  100 (100)
T 4hci_A           97 VIVK  100 (100)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            9997

>3c75_A Amicyanin; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.10  E-value=4.6e-06  Score=58.43  Aligned_cols=76  Identities=18%  Similarity=0.166  Sum_probs=48.9

Q ss_pred             CCCccccCCCCCCeeeeCCEEEEEeCCC-CCeEEEECcCCCCCCCCCCCCcccccCC-cEEEeC-CcceEEEeCCCCCcc
Q 048131           37 GWVFGVQNWPEGKTFKCGDILEFNYDPQ-RHNVIIVDQEGHDSCKPASDAKKFQTGK-DQIVLN-HGKNFFICGVPTHCS  113 (124)
Q Consensus        37 gW~~~~~~Wa~~~~f~vGD~L~F~y~~~-~h~V~~V~~~~y~~C~~~~~~~~~~~G~-~~v~l~-~G~~yfic~~~~hC~  113 (124)
                      ++.+.|    +..++++||++.|..... .|++...+... ..=....  .....|. .+++++ ||+|.|+|..  |. 
T Consensus        54 ~~~F~P----~~i~V~~GdtV~~~N~d~~~H~v~~~~~~~-g~~~~~s--~~l~pG~t~~~tF~~~G~y~y~C~~--H~-  123 (132)
T 3c75_A           54 KMKYLT----PEVTIKAGETVYWVNGEVMPHNVAFKKGIV-GEDAFRG--EMMTKDQAYAITFNEAGSYDYFCTP--HP-  123 (132)
T ss_dssp             TTEESS----SEEEECTTCEEEEEECSSSCBCCEECTTTS-SSSCEEC--CCBCTTEEEEEEECSCEEEEEECSS--CT-
T ss_pred             eeEEeC----CEEEECCCCEEEEEECCCCceEEEEeCCCC-Ccccccc--cccCCCCEEEEEcCCCEEEEEEeCC--Cc-
Confidence            455444    347899999999997654 69988753221 0000000  1122333 367778 9999999996  53 


Q ss_pred             CCCcEEEEEeC
Q 048131          114 DHGMKLEINVE  124 (124)
Q Consensus       114 ~~GmKl~I~V~  124 (124)
                        ||+..|.|+
T Consensus       124 --gM~G~I~V~  132 (132)
T 3c75_A          124 --FMRGKVIVE  132 (132)
T ss_dssp             --TCEEEEEEC
T ss_pred             --CCEEEEEEC
Confidence              899999986

>3cvb_A Plastocyanin; cupredoxin, SELF assembly, copper, electron transport, metal-binding, transport; 1.40A {Phormidium laminosum} PDB: 3cvc_A 3cvd_A 2w8c_A 2w88_A 2q5b_A 1baw_A 3bqv_A

Probab=98.02  E-value=2.4e-05  Score=51.46  Aligned_cols=87  Identities=26%  Similarity=0.444  Sum_probs=55.7

Q ss_pred             EEEecCC-CCCCccccCCCCCCeeeeCCEEEEEeCC-CCCeEEEECcCCCCCCCC-------CCCCcccccCCc-EEEe-
Q 048131           29 TFKVGDD-GGWVFGVQNWPEGKTFKCGDILEFNYDP-QRHNVIIVDQEGHDSCKP-------ASDAKKFQTGKD-QIVL-   97 (124)
Q Consensus        29 ~~~VG~~-~gW~~~~~~Wa~~~~f~vGD~L~F~y~~-~~h~V~~V~~~~y~~C~~-------~~~~~~~~~G~~-~v~l-   97 (124)
                      +..+|.+ .+..+.+.    ..+++.||+|.|.... ..|++..-... + .+..       .........|.+ ++++ 
T Consensus         4 ~V~~~~~~~~~~f~p~----~i~v~~Gd~V~~~N~~~~~H~v~~~~~~-~-~~~~g~~~~~~~~~~~~i~pG~~~~~~f~   77 (105)
T 3cvb_A            4 TVKMGADSGLFQFEPA----NVTVHPGDTVKWVNNKLPPHNILFDDKQ-V-PGASKELADKLSHSQLMFSPGESYEITFS   77 (105)
T ss_dssp             EEEESCTTCCSCEESS----EEEECTTEEEEEEECSSCCEEEEECTTS-S-GGGCHHHHHHHCEEEEECSTTCEEEEEEC
T ss_pred             EEEEeecCCccEEeCC----EEEEcCCCEEEEEECCCCCCeEEEeCCC-C-CcccccccccccccccccCCCCeEEEEEe
Confidence            4456643 56666543    3689999999998764 47998764211 1 1100       000012233433 6666 


Q ss_pred             --C-CcceEEEeCCCCCccCCCcEEEEEeC
Q 048131           98 --N-HGKNFFICGVPTHCSDHGMKLEINVE  124 (124)
Q Consensus        98 --~-~G~~yfic~~~~hC~~~GmKl~I~V~  124 (124)
                        + ||+|+|.|.  .|+. .||+..|.|+
T Consensus        78 ~~~~~G~y~y~C~--~H~~-~GM~G~i~V~  104 (105)
T 3cvb_A           78 SDFPAGTYTYYCA--PHRG-AGMVGKITVE  104 (105)
T ss_dssp             TTSCSEEEEEECT--TTGG-GTCEEEEEEC
T ss_pred             cCCCCeeEEEEeC--Cchh-cCCEEEEEEc
Confidence              6 899999999  6999 9999999985

>2ux6_A Pseudoazurin; type-1 copper, metal-binding, redox potential, copper, transport, cupredoxin, periplasmic, electron transport; 1.3A {Achromobacter cycloclastes} PDB: 2ux7_A 2uxf_A 2uxg_A 1bqk_A 1bqr_A 1zia_A 1zib_A 2jkw_A

Probab=97.90  E-value=3.2e-05  Score=53.59  Aligned_cols=78  Identities=23%  Similarity=0.274  Sum_probs=51.9

Q ss_pred             cCCCCCCccccCCCCCCeeeeCCEEEEEeCCCCCeEEEECcCCCCCCCCCCCCc-ccccC-CcEEEeC-CcceEEEeCCC
Q 048131           33 GDDGGWVFGVQNWPEGKTFKCGDILEFNYDPQRHNVIIVDQEGHDSCKPASDAK-KFQTG-KDQIVLN-HGKNFFICGVP  109 (124)
Q Consensus        33 G~~~gW~~~~~~Wa~~~~f~vGD~L~F~y~~~~h~V~~V~~~~y~~C~~~~~~~-~~~~G-~~~v~l~-~G~~yfic~~~  109 (124)
                      |++.+..+.+.    ..++++||+|.|......|+|...+.     +-+..... ....| ..+++++ ||.|.|+|.. 
T Consensus        11 g~~g~~~F~P~----~i~V~~GdtV~f~n~d~~H~v~~~~~-----~~p~~~~~~~~~~g~t~~~tF~~~G~y~y~C~~-   80 (122)
T 2ux6_A           11 GKDGAMVFEPA----SLKVAPGDTVTFIPTDKGHNVETIKG-----MIPDGAEAFKSKINENYKVTFTAPGVYGVKCTP-   80 (122)
T ss_dssp             ETTEEEEEESS----EEEECTTEEEEEEESSSSCCCEECTT-----CSCTTCCCCBCCTTCCEEEEECSCEEEEEEETT-
T ss_pred             CCCCCceEeCC----EEEECCCCEEEEEECCCCcEEEEccc-----ccCCCcceeecCCCCEEEEEeCCCEEEEEEeCC-
Confidence            54434554443    46899999999999876899987531     11111111 11123 3478888 9999999996 


Q ss_pred             CCccCCCcEEEEEeC
Q 048131          110 THCSDHGMKLEINVE  124 (124)
Q Consensus       110 ~hC~~~GmKl~I~V~  124 (124)
                       |..   |+..|.|.
T Consensus        81 -H~~---M~G~I~V~   91 (122)
T 2ux6_A           81 -HPF---MVGVVQVG   91 (122)
T ss_dssp             -EEE---EEEEEEES
T ss_pred             -Ccc---CEEEEEEe
Confidence             876   99999884

>1cuo_A Protein (azurin ISO-2); beta barrel, periplasmic, electron transport; 1.60A {Methylomonas SP} SCOP: b.6.1.1 PDB: 1uat_A

Probab=97.85  E-value=5.4e-05  Score=53.15  Aligned_cols=90  Identities=12%  Similarity=0.230  Sum_probs=54.7

Q ss_pred             EEEecCCCCCCccccCCCCCCeeeeC-CEEEEEeCC--C------CCeEEEECcC----------------CCCCCCCCC
Q 048131           29 TFKVGDDGGWVFGVQNWPEGKTFKCG-DILEFNYDP--Q------RHNVIIVDQE----------------GHDSCKPAS   83 (124)
Q Consensus        29 ~~~VG~~~gW~~~~~~Wa~~~~f~vG-D~L~F~y~~--~------~h~V~~V~~~----------------~y~~C~~~~   83 (124)
                      +..|+.++...+.++    ..+++.| |++.|.+.+  +      .|+++..+..                +|..=+..+
T Consensus         4 ~v~i~~~d~m~F~p~----~i~V~~G~~~vtv~~~N~g~~~~~~m~H~~vi~~~~~~~~~~~~~m~~~~~~~~v~~~~~~   79 (129)
T 1cuo_A            4 ETTVTSGDTMTYSTR----SISVPASCAEFTVNFEHKGHMPKTGMGHNWVLAKSADVGDVAKEGAHAGADNNFVTPGDKR   79 (129)
T ss_dssp             EEEEEECSSSCCSCS----EEEEETTCSEEEEEEEECSSSCHHHHCBCCEEEEGGGHHHHHHHHHTTCGGGTTSCTTCTT
T ss_pred             EEEEEeCCCceEccC----eEEEcCCCeEEEEEEEECCCCcccccccceEEecCcchhhhHHHhhhcccccccccccccc
Confidence            344554456666653    4688999 977666643  2      3999887543                221101111


Q ss_pred             CC---cccccCCc---EEEe----CCcceEEEeCCCCCccCCCcEEEEEeC
Q 048131           84 DA---KKFQTGKD---QIVL----NHGKNFFICGVPTHCSDHGMKLEINVE  124 (124)
Q Consensus        84 ~~---~~~~~G~~---~v~l----~~G~~yfic~~~~hC~~~GmKl~I~V~  124 (124)
                      -+   .....|.+   +|++    .||.|+|+|+.|+|=+  |||-.|+|+
T Consensus        80 ~~~~t~~l~pGet~svtf~~~~~~~~G~Y~f~C~~pgH~~--~M~G~i~V~  128 (129)
T 1cuo_A           80 VIAFTPIIGGGEKTSVKFKVSALSKDEAYTYFCSYPGHFS--MMRGTLKLE  128 (129)
T ss_dssp             CSEECCCBCTTCEEEEEEEGGGCCTTSCEEEECCSTTCTT--TSEEEEEEE
T ss_pred             ceeeeeEECCCCEEEEEEeccccCCCceEEEEeCCCCchH--cCEEEEEEe
Confidence            11   12334433   4443    2799999999999977  699999884

>3ay2_A Lipid modified azurin protein; beta sandwich, bacterial protein, anticancer, anti-HIV/AIDS, antiparasitic activity, antitumor protein; 1.90A {Neisseria gonorrhoeae}

Probab=97.84  E-value=8.4e-05  Score=54.54  Aligned_cols=92  Identities=18%  Similarity=0.273  Sum_probs=56.7

Q ss_pred             eEEEEecCCCCCCccccCCCCCCee-eeCCEEEEEeC--CC------CCeEEEECcCC---------------CCCCCCC
Q 048131           27 ATTFKVGDDGGWVFGVQNWPEGKTF-KCGDILEFNYD--PQ------RHNVIIVDQEG---------------HDSCKPA   82 (124)
Q Consensus        27 a~~~~VG~~~gW~~~~~~Wa~~~~f-~vGD~L~F~y~--~~------~h~V~~V~~~~---------------y~~C~~~   82 (124)
                      ..+..|+.+++..+.++    ..++ +.||++.|.+.  .+      .|+++..+..+               |-.=+..
T Consensus        42 ~~~V~I~~~d~m~F~P~----~itV~kaG~~Vtv~~~N~g~~p~~~m~Hn~vi~~~~~~~~v~~~~m~~~~~~~v~~~d~  117 (167)
T 3ay2_A           42 NCAATVESNDNMQFNTK----DIQVSKACKEFTITLKHTGTQPKASMGHNLVIAKAEDMDGVFKDGVGAADTDYVKPDDA  117 (167)
T ss_dssp             CCEEEEEECTTSCBSCS----EEEEETTCSSEEEEEEECSCSCHHHHCBCCEEEEGGGHHHHHHHHGGGGGGTTSCTTCT
T ss_pred             ceEEEEEeCCCceEecc----eEEEecCCCEEEEEEEECCCCccccccceEEeccCcchhhhHHHhhhcccccccccccc
Confidence            34666776667776654    3577 78997666654  33      29998875432               2110111


Q ss_pred             CC---CcccccCCc-EEEeC-----CcceEEEeCCCCCccCCCcEEEEEeC
Q 048131           83 SD---AKKFQTGKD-QIVLN-----HGKNFFICGVPTHCSDHGMKLEINVE  124 (124)
Q Consensus        83 ~~---~~~~~~G~~-~v~l~-----~G~~yfic~~~~hC~~~GmKl~I~V~  124 (124)
                      +.   ......|.+ +++++     ||.|.|+|++++|=+  |||..|+|+
T Consensus       118 ~vl~~t~~l~pGet~svtf~~~~lkpG~Y~f~Ct~PgH~~--gM~G~i~V~  166 (167)
T 3ay2_A          118 RVVAHTKLIGGGEESSLTLDPAKLADGDYKFACTFPGHGA--LMNGKVTLV  166 (167)
T ss_dssp             TEEEECCCBCTTCEEEEEECGGGGTTSCEEEECCSTTGGG--TSEEEEEEE
T ss_pred             chhccceeeCCCCEEEEEEecCCCCCcEEEEEcCCCCchh--cCEEEEEEe
Confidence            10   112334433 55553     799999999999977  799999984

>1id2_A Amicyanin; beta barrel, type-1 blue copper protein, electron transfer protein, electron transport; 2.15A {Paracoccus versutus} SCOP: b.6.1.1

Probab=97.74  E-value=8e-05  Score=49.90  Aligned_cols=69  Identities=20%  Similarity=0.200  Sum_probs=45.5

Q ss_pred             CCeeeeCCEEEEEeCCC-CCeEEEECcCCCCCCCCCCCCcccccCC-cEEEeC-CcceEEEeCCCCCccCCCcEEEEEeC
Q 048131           48 GKTFKCGDILEFNYDPQ-RHNVIIVDQEGHDSCKPASDAKKFQTGK-DQIVLN-HGKNFFICGVPTHCSDHGMKLEINVE  124 (124)
Q Consensus        48 ~~~f~vGD~L~F~y~~~-~h~V~~V~~~~y~~C~~~~~~~~~~~G~-~~v~l~-~G~~yfic~~~~hC~~~GmKl~I~V~  124 (124)
                      ..++++||+|.|..... .|++...+... ..=...+  .....|. .+++++ ||.|.|.|..  |.   ||+..|.|+
T Consensus        35 ~i~V~~G~tV~~~N~d~~~H~v~~~~~~~-~~~~~~s--~~l~~g~~~~~tf~~~G~y~~~C~~--H~---~M~G~I~V~  106 (106)
T 1id2_A           35 EVTIKAGETVYWVNGEVMPHNVAFKKGIV-GEDAFRG--EMMTKDQAYAITFNEAGSYDYFCTP--HP---FMRGKVIVE  106 (106)
T ss_dssp             EEEECTTCEEEEEECSSSCBCCEECTTTS-SSSCEEC--CCBCTTEEEEEEECSCEEEEEECSS--CT---TCEEEEEEC
T ss_pred             EEEECCCCEEEEEECCCCcEEEEEeCCCC-Ccccccc--cccCCCCEEEEEeCCCEEEEEEeCC--CC---CCEEEEEEC
Confidence            47899999999997654 69987643220 0000000  1122343 367778 9999999997  64   899999986

>2ov0_A Amicyanin; beta-sandwich, electron transport; 0.75A {Paracoccus denitrificans} SCOP: b.6.1.1 PDB: 1aaj_A 1aan_A 1aac_A 1mg2_C* 1mg3_C* 1t5k_A 2gc4_C* 2gc7_C* 2j55_A* 2j56_A* 2j57_A* 2mta_A* 1bxa_A 2rac_A 3l45_A 3ie9_A 3iea_A 2idq_A 2ids_A 1sf3_A ...

Probab=97.72  E-value=7.1e-05  Score=49.92  Aligned_cols=81  Identities=17%  Similarity=0.180  Sum_probs=52.8

Q ss_pred             eEEEEecCCCCCCccccCCCCCCeeeeCCEEEEEeCCC-CCeEEEECcCC----CCCCCCCCCCcccccCC-cEEEeC-C
Q 048131           27 ATTFKVGDDGGWVFGVQNWPEGKTFKCGDILEFNYDPQ-RHNVIIVDQEG----HDSCKPASDAKKFQTGK-DQIVLN-H   99 (124)
Q Consensus        27 a~~~~VG~~~gW~~~~~~Wa~~~~f~vGD~L~F~y~~~-~h~V~~V~~~~----y~~C~~~~~~~~~~~G~-~~v~l~-~   99 (124)
                      +.++.|-- .+|.+.+.    ..++++||+|.|..... .|+|...+..+    |+.       .....|. .+++++ |
T Consensus        18 a~~~~V~~-~~~~F~P~----~i~v~~Gd~V~~~N~d~~~H~v~~~~~~~g~~~~~~-------~~~~pG~~~~~tf~~~   85 (105)
T 2ov0_A           18 DGAIVVDI-AKMKYETP----ELHVKVGDTVTWINREAMPHNVHFVAGVLGEAALKG-------PMMKKEQAYSLTFTEA   85 (105)
T ss_dssp             TTCEEEEE-ETTEESSS----EEEECTTCEEEEEECSSSCBCCEECTTTSSSSCEEC-------CCBCTTEEEEEEECSC
T ss_pred             CcCEEEEE-eecEEcCC----EEEECCCCEEEEEECCCCCEEEEEcCCCCCcccccc-------cccCCCCEEEEEeCCC
Confidence            44454432 35665543    47899999999987754 79987643211    211       1122333 367778 9


Q ss_pred             cceEEEeCCCCCccCCCcEEEEEeC
Q 048131          100 GKNFFICGVPTHCSDHGMKLEINVE  124 (124)
Q Consensus       100 G~~yfic~~~~hC~~~GmKl~I~V~  124 (124)
                      |.|+|.|..  |   .||+..|.|+
T Consensus        86 G~y~y~C~~--H---~gM~G~i~V~  105 (105)
T 2ov0_A           86 GTYDYHCTP--H---PFMRGKVVVE  105 (105)
T ss_dssp             EEEEEECSS--C---TTCEEEEEEC
T ss_pred             EEEEEEeCC--C---CCCEEEEEEC
Confidence            999999997  4   3899999986

>1iko_P Ephrin-B2; greek KEY, glycosylation, signaling protein; HET: NAG MAN; 1.92A {Mus musculus} SCOP: b.6.1.5

Probab=97.70  E-value=2e-05  Score=58.62  Aligned_cols=74  Identities=19%  Similarity=0.347  Sum_probs=49.9

Q ss_pred             eeeCCEEEEE---eCCC------CCeEEEECcCCCCCCCCCC-CCccc--c--cCCcEEEe--------------CCc-c
Q 048131           51 FKCGDILEFN---YDPQ------RHNVIIVDQEGHDSCKPAS-DAKKF--Q--TGKDQIVL--------------NHG-K  101 (124)
Q Consensus        51 f~vGD~L~F~---y~~~------~h~V~~V~~~~y~~C~~~~-~~~~~--~--~G~~~v~l--------------~~G-~  101 (124)
                      +++||.|-+-   |+.+      .+.+++|++++|+.|+... +...+  .  .+...|++              .|| .
T Consensus        26 v~igD~LdIiCP~~~~~~~~~~E~~~LY~Vs~~~y~~C~~~~~~~~l~~C~~P~~~~kftikFq~fsP~p~GlEF~pg~~  105 (178)
T 1iko_P           26 PQIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKENTPLLNCARPDQDVKFTIKFQEFSPNLWGLEFQKNKD  105 (178)
T ss_dssp             CCTTCEEEEECCCCCSSSCSCCCBEEEEEECHHHHHHTBCCTTCCCSEEECCTTSCCEEEEECCSSCSSTTCCCCCTTEE
T ss_pred             ecCCCEEEEECCCCCCCCCCCceEEEEEEECHHHhhhcccCCCCcEEEEecCCCCCEEEEEEEEecCCCCCcccccCCCc
Confidence            4569999886   3321      3789999999999998763 22111  1  12233332              366 7


Q ss_pred             eEEEeCCC-----------CCccCCCcEEEEEeC
Q 048131          102 NFFICGVP-----------THCSDHGMKLEINVE  124 (124)
Q Consensus       102 ~yfic~~~-----------~hC~~~GmKl~I~V~  124 (124)
                      |||||.-.           |.|...+|||.|.|.
T Consensus       106 YY~IstS~G~~~gl~~~~gG~C~t~~Mkl~ikV~  139 (178)
T 1iko_P          106 YYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVG  139 (178)
T ss_dssp             EEEECCCCBSGGGTTCCBSHHHHHSCCEEEEEET
T ss_pred             eEEEecCCcccccccccCCCccccceeEEEEEee
Confidence            88998854           799966999999884

>2ccw_A Azurin II, AZN-2; electron transport (cuproprotein), alcaligenes xylosoxidans, electron transfer, cupredoxin, electron transport; 1.13A {Alcaligenes xylosoxydans} SCOP: b.6.1.1 PDB: 1dz0_A 1dyz_A 1aiz_A 1azb_A 1azc_A 1uri_A 2aza_A 1a4a_A 1a4b_A 1a4c_A

Probab=97.61  E-value=0.00034  Score=48.97  Aligned_cols=90  Identities=14%  Similarity=0.280  Sum_probs=52.0

Q ss_pred             EEEecCCCCCCccccCCCCCCee-eeCCEEEEEeC--CC------CCeEEEECcC----------------CCCCCCCCC
Q 048131           29 TFKVGDDGGWVFGVQNWPEGKTF-KCGDILEFNYD--PQ------RHNVIIVDQE----------------GHDSCKPAS   83 (124)
Q Consensus        29 ~~~VG~~~gW~~~~~~Wa~~~~f-~vGD~L~F~y~--~~------~h~V~~V~~~----------------~y~~C~~~~   83 (124)
                      +..|+.+++..+.++    ..++ +.||++.|.+.  ..      .|+++..+.+                +|..=+.++
T Consensus         4 ~v~v~~~d~m~F~p~----~i~V~k~G~~vtv~~~N~g~~p~~~m~H~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (129)
T 2ccw_A            4 EATVESNDAMQYNVK----EIVVDKSCKQFTMHLKHVGKMAKVAMGHNLVLTKDADKQAVATDGMGAGLAQDYVKAGDTR   79 (129)
T ss_dssp             EEEEEECTTSCBSCS----EEEECTTCSEEEEEEEECSCCCHHHHCBCCEEEEGGGHHHHHHHHHHHCGGGTTSCTTCTT
T ss_pred             EEEEEeCCCccEecc----eEEEecCCCEEEEEEEECCCcccccCcceEEEcCccchhhhHHHhhhhccccccccccccc
Confidence            344554455666553    2455 66997666664  33      2999887543                232101111


Q ss_pred             C---CcccccCCc-EEEe-----CCcc-eEEEeCCCCCccCCCcEEEEEeC
Q 048131           84 D---AKKFQTGKD-QIVL-----NHGK-NFFICGVPTHCSDHGMKLEINVE  124 (124)
Q Consensus        84 ~---~~~~~~G~~-~v~l-----~~G~-~yfic~~~~hC~~~GmKl~I~V~  124 (124)
                      -   ......|.+ ++++     .+|. |.|+|++|+|=+  |||-.|+|+
T Consensus        80 ~~~~t~~l~pGet~svtf~~~~l~~G~~Y~f~C~~pgH~~--gM~G~i~V~  128 (129)
T 2ccw_A           80 VIAHTKVIGGGESDSVTFDVSKIAAGENYAYFCSFPGHWA--MMKGTLKLG  128 (129)
T ss_dssp             EEEECCCBCTTCEEEEEEEGGGSCTTCCEEEECCSTTGGG--TSEEEEEEC
T ss_pred             ceeeeeEECCCCEEEEEEeccccCCCceEEEEeCCCChhH--cCEEEEEEe
Confidence            0   112334433 4444     2554 999999999977  799999985

>2iaa_C Azurin; quinoprotein, tryptophan tryptophylquinone, cupredoxin, electron transfer, oxidoreductase/electron transport comple; HET: TRQ; 1.95A {Alcaligenes faecalis} PDB: 2h47_C* 2h3x_C*

Probab=97.53  E-value=0.00068  Score=47.40  Aligned_cols=89  Identities=18%  Similarity=0.305  Sum_probs=52.0

Q ss_pred             EEecCCCCCCccccCCCCCCee-eeCCEEEEEeC--CC------CCeEEEECcC----------------CCCCCCCCCC
Q 048131           30 FKVGDDGGWVFGVQNWPEGKTF-KCGDILEFNYD--PQ------RHNVIIVDQE----------------GHDSCKPASD   84 (124)
Q Consensus        30 ~~VG~~~gW~~~~~~Wa~~~~f-~vGD~L~F~y~--~~------~h~V~~V~~~----------------~y~~C~~~~~   84 (124)
                      ..|+.+++..+.++    ..++ +.||++.|.+.  ..      .|+++..+.+                +|-.=+.++-
T Consensus         4 v~v~~~d~m~F~p~----~i~V~k~G~~vtv~~~N~g~~p~~~m~Hn~vi~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~   79 (128)
T 2iaa_C            4 VSIEGNDSMQFNTK----SIVVDKTCKEFTINLKHTGKLPKAAMGHNVVVSKKSDESAVATDGMKAGLNNDYVKAGDERV   79 (128)
T ss_dssp             EEEEECTTSCBSCS----EEEECTTCSEEEEEEEECSCSCHHHHCBCCEEEETTHHHHHHHHHHHHCGGGTTSCTTCTTE
T ss_pred             EEEEeCCCceEecC----EEEEecCCcEEEEEEEECCCCcccCCCceEEEccccchhhHHHhhhhccccccccccccchh
Confidence            34454456666653    2455 66997666664  32      2999877433                2321011110


Q ss_pred             ---CcccccCCc-EEEeC-----Cc-ceEEEeCCCCCccCCCcEEEEEeC
Q 048131           85 ---AKKFQTGKD-QIVLN-----HG-KNFFICGVPTHCSDHGMKLEINVE  124 (124)
Q Consensus        85 ---~~~~~~G~~-~v~l~-----~G-~~yfic~~~~hC~~~GmKl~I~V~  124 (124)
                         ......|.+ +++++     +| +|.|+|++|+|=+  |||-.|+|.
T Consensus        80 ~~~t~~l~pGes~~vtf~~~~l~~G~~Y~f~C~~PgH~~--gM~G~i~V~  127 (128)
T 2iaa_C           80 IAHTSVIGGGETDSVTFDVSKLKEGEDYAFFCSFPGHWS--IMKGTIELG  127 (128)
T ss_dssp             EEECCCBCTTCEEEEEEESSCCCTTCCEEEECCSTTCTT--TSEEEEEEC
T ss_pred             hccceeeCCCCEEEEEEeccccCCCceEEEEECCCChhH--CCEEEEEEe
Confidence               112334433 44443     58 4999999999976  899999984

>1nwp_A Azurin; electron transport, cupredoxin, electron transfer; 1.60A {Pseudomonas putida} SCOP: b.6.1.1 PDB: 1nwo_A 1joi_A

Probab=97.45  E-value=0.00083  Score=46.97  Aligned_cols=90  Identities=19%  Similarity=0.282  Sum_probs=53.8

Q ss_pred             EEEecCCCCCCccccCCCCCCee-eeCCEEEEEeC--CCC------CeEEEECcCC----------------CCCCCCCC
Q 048131           29 TFKVGDDGGWVFGVQNWPEGKTF-KCGDILEFNYD--PQR------HNVIIVDQEG----------------HDSCKPAS   83 (124)
Q Consensus        29 ~~~VG~~~gW~~~~~~Wa~~~~f-~vGD~L~F~y~--~~~------h~V~~V~~~~----------------y~~C~~~~   83 (124)
                      +..|+.+++..+.++    ..++ +.||++.|.+.  ...      |+++..+.++                |-.=+.++
T Consensus         4 ~v~v~~~d~m~F~p~----~i~V~k~G~~vtv~~~N~g~~p~~~m~H~~vi~~~~~~~~~~~~~m~~~~~~~~~~~~~~~   79 (128)
T 1nwp_A            4 KVTVDSTDQMSFNTK----DIAIDKSCKTFTVELTHSGSLPKNVMGHNLVISKEADMQPIATDGLSAGIDKQYLKDGDAR   79 (128)
T ss_dssp             EEEEEECTTSCBSCS----EEEECTTCSEEEEEEEECSSCCHHHHCBCCEEEEGGGHHHHHHHHTTTCGGGTTSCTTCTT
T ss_pred             EEEEEeCCCccEecC----EEEEecCCCEEEEEEEECCCCcccCCCceEEEccccchhhHHHHHhhccccccccccccch
Confidence            344555556776654    3577 78997766664  322      9998864322                21101011


Q ss_pred             CC---cccccCCc-EEEeC-----Ccc-eEEEeCCCCCccCCCcEEEEEeC
Q 048131           84 DA---KKFQTGKD-QIVLN-----HGK-NFFICGVPTHCSDHGMKLEINVE  124 (124)
Q Consensus        84 ~~---~~~~~G~~-~v~l~-----~G~-~yfic~~~~hC~~~GmKl~I~V~  124 (124)
                      -+   .....|.+ +++++     +|. |.|+|++|+|=+  |||-.|+|+
T Consensus        80 ~~~~t~~l~pGet~svtf~~~~l~~G~~Y~f~C~~PgH~~--gM~G~i~V~  128 (128)
T 1nwp_A           80 VIAHTKVIGAGEKDSVTFDVSKLAAGEKYGFFCSFPGHIS--MMKGTVTLK  128 (128)
T ss_dssp             EEEECCCBCTTCEEEEEEEGGGSCTTSCEEEECCSTTCGG--GSEEEEEEC
T ss_pred             hheeeeeeCCCCEEEEEEeccccCCCceEEEEECCCChhH--CCEEEEEEC
Confidence            01   12334433 45443     566 999999999977  799999985

>3d12_B Ephrin-B3; beta propeller, protein-receptor complex, envelope protein, glycoprotein, hemagglutinin, hydrolase, membrane, signal-AN transmembrane; HET: NAG BMA MAN BGC LXZ NGA GL0 GLC LXB NGZ GXL; 3.00A {Mus musculus}

Probab=97.13  E-value=0.00096  Score=47.81  Aligned_cols=75  Identities=16%  Similarity=0.224  Sum_probs=48.8

Q ss_pred             eeeeCCEEEEEe---CC---------CCCeEEEECcCCCCCCCCC-CCCcccc----cCCc--------------EEEeC
Q 048131           50 TFKCGDILEFNY---DP---------QRHNVIIVDQEGHDSCKPA-SDAKKFQ----TGKD--------------QIVLN   98 (124)
Q Consensus        50 ~f~vGD~L~F~y---~~---------~~h~V~~V~~~~y~~C~~~-~~~~~~~----~G~~--------------~v~l~   98 (124)
                      .+++||.|-+-=   +.         ....+++|++++|++|+.. .+...+.    .+..              .+.+.
T Consensus        23 ~V~i~D~ldIiCP~~~~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~~~~C~~P~~~~kft~kFq~fsP~p~G~EF~  102 (141)
T 3d12_B           23 YPQIGDRLDLLCPRARPPGPHSSPSYEFYKLYLVEGAQGRRCEAPPAPNLLLTCDRPDLDLRFTIKFQEYSPNLWGHEFR  102 (141)
T ss_dssp             CCCTTCEEEEEECCCSSCCTTCCSSCCCCEEEEECSHHHHTTBCCSSCEEEEECCCSSSCEEEEEESSSCCSCCSCCCCC
T ss_pred             EecCCCEEEEECCCCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCeEEEEeCCCCCCeEEEEEEEEcCCCCCceeee
Confidence            567889997763   32         2456899999999999876 2321111    1222              23334


Q ss_pred             Cc-ceEEEeCC-----------CCCccCCCcEEEEEeC
Q 048131           99 HG-KNFFICGV-----------PTHCSDHGMKLEINVE  124 (124)
Q Consensus        99 ~G-~~yfic~~-----------~~hC~~~GmKl~I~V~  124 (124)
                      || .||||++=           +|-|....|||.|.|.
T Consensus       103 pG~~YY~ISts~G~~~gl~~~~gG~C~t~~Mkl~i~V~  140 (141)
T 3d12_B          103 SHHDYYIIATSDGTREGLESLQGGVCLTRGMKVLLRVG  140 (141)
T ss_dssp             TTCEEEEEECSCSSTTTTTCCBCSHHHHTCCEEEEECC
T ss_pred             CCCeEEEEecCCCCcccccccCCCccccceEEEEEEec
Confidence            66 57788763           3579966999999984

>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4 PDB: 1ibz_A 1ic0_A

Probab=96.81  E-value=0.00067  Score=45.28  Aligned_cols=66  Identities=18%  Similarity=0.228  Sum_probs=43.1

Q ss_pred             CCeeeeCCEEEEEeCC---CCCeEEEECcCCCCCCCCCCCCcccccCCc-EEEe--C-CcceEEEeCCCCCccCCCcEEE
Q 048131           48 GKTFKCGDILEFNYDP---QRHNVIIVDQEGHDSCKPASDAKKFQTGKD-QIVL--N-HGKNFFICGVPTHCSDHGMKLE  120 (124)
Q Consensus        48 ~~~f~vGD~L~F~y~~---~~h~V~~V~~~~y~~C~~~~~~~~~~~G~~-~v~l--~-~G~~yfic~~~~hC~~~GmKl~  120 (124)
                      ..+++.||++.|.+.+   ..|++..-+. +        .......|.+ ++++  + ||.|+|.|..  ||...+|+..
T Consensus        39 ~i~v~~G~~V~~~~~n~d~~~H~~~i~~~-~--------~~~~i~pG~~~~~~f~~~~~G~y~~~C~~--~~~~~~M~g~  107 (112)
T 1iby_A           39 TLVVKKGDAVKVVVENKSPISEGFSIDAF-G--------VQEVIKAGETKTISFTADKAGAFTIWCQL--HPKNIHLPGT  107 (112)
T ss_dssp             EEEEETTCEEEEEEEECSSSCEEEEEGGG-T--------EEEEECTTCEEEEEEECCSCEEEEEBCSS--SCTTTBCCEE
T ss_pred             EEEEeCCCEEEEEEEECCCCeEEEEEcCC-C--------ceeEeCCCCEEEEEEECCCCEEEEEECCC--CCchHHCEEE
Confidence            4689999999997753   2588754221 1        0112333433 4444  6 8999999997  6752459999


Q ss_pred             EEeC
Q 048131          121 INVE  124 (124)
Q Consensus       121 I~V~  124 (124)
                      |.|+
T Consensus       108 i~V~  111 (112)
T 1iby_A          108 LNVV  111 (112)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9884

>2x11_B Ephrin-A5; receptor-signaling protein complex, developmental protein, signaling platform, kinase, transferase, neurogenesis, receptor, cataract; 4.83A {Homo sapiens}

Probab=96.64  E-value=0.00098  Score=49.44  Aligned_cols=75  Identities=21%  Similarity=0.380  Sum_probs=45.0

Q ss_pred             CeeeeCCEEEEE---eCC-------CCCeEEEECcCCCCCCCCCCCC-c------ccc-cCCcEE--------------E
Q 048131           49 KTFKCGDILEFN---YDP-------QRHNVIIVDQEGHDSCKPASDA-K------KFQ-TGKDQI--------------V   96 (124)
Q Consensus        49 ~~f~vGD~L~F~---y~~-------~~h~V~~V~~~~y~~C~~~~~~-~------~~~-~G~~~v--------------~   96 (124)
                      ..+++||.|-+-   |+.       ....+++|++++|++|+..+.. .      +.. .|+..|              .
T Consensus        52 i~V~i~D~LDIiCP~y~~~~~~~~~E~y~LY~Vs~e~y~~C~~~~~~~~~~~C~~P~~p~~~~kftikFQ~FSP~p~G~E  131 (177)
T 2x11_B           52 IDVCINDYLDVFCPHYEDSVPEDKTERYVLYMVNFDGYSACDHTSKGFKRWECNRPHSPNGPLKFSEKFQLFTPFSLGFE  131 (177)
T ss_dssp             EEECTTCEEEEECCCCCSSSCSSSCCCEEEEEECHHHHHHTCCTTTEEEEEEECCTTCSSSSCEEEEECCSSCSSTTCCC
T ss_pred             EEecCCCEEEEECCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCcEEEEeCCCCCCCCCeEEEEEEEEcCCCCCCcc
Confidence            568899999775   331       2456789999999999875422 1      111 123322              2


Q ss_pred             eCCc-ceEEEeCCCCCccCCC--cEEEEEeC
Q 048131           97 LNHG-KNFFICGVPTHCSDHG--MKLEINVE  124 (124)
Q Consensus        97 l~~G-~~yfic~~~~hC~~~G--mKl~I~V~  124 (124)
                      +.|| .||||++=.++=. .|  |||.|.|.
T Consensus       132 F~pG~~YYyISTS~~~~~-g~~ClrLkV~V~  161 (177)
T 2x11_B          132 FRPGREYFYISSAIPDNG-RRSCLKLKVFVR  161 (177)
T ss_dssp             CCTTEEEEEEEEESSCCC-SSSCCEEEEEEC
T ss_pred             ccCCCeEEEEecCCCCCC-CCcceEEEEEEE
Confidence            3367 5778865322211 22  89999874

>2wo3_B Ephrin-A2; transferase-signaling protein complex, EFN, EPHA4, KINA ephrin, complex, membrane, cell surface receptor, tyrosine- kinase, glycoprotein; HET: NAG; 2.35A {Homo sapiens}

Probab=96.29  E-value=0.0048  Score=44.88  Aligned_cols=35  Identities=26%  Similarity=0.468  Sum_probs=25.7

Q ss_pred             CeeeeCCEEEEE---eCCC--------CCeEEEECcCCCCCCCCCC
Q 048131           49 KTFKCGDILEFN---YDPQ--------RHNVIIVDQEGHDSCKPAS   83 (124)
Q Consensus        49 ~~f~vGD~L~F~---y~~~--------~h~V~~V~~~~y~~C~~~~   83 (124)
                      ..+++||.|-+-   |+.+        ...+++|++++|++|+...
T Consensus        32 i~V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~Vs~~~y~~C~~~~   77 (157)
T 2wo3_B           32 VEVSINDYLDIYCPHYGAPLPPAERMEHYVLYMVNGEGHASCDHRQ   77 (157)
T ss_dssp             EEECTTCEEEEECCCCCSSCCCGGGSCCEEEEEECHHHHHHTCCTT
T ss_pred             EEeccCCEEEEECCCCCCCCCCCCCceEEEEEEECHHHhccccCCC
Confidence            357889999876   3211        2347899999999998764

>1shx_A Ephrin-A5; ephrin signaling, hormone-growth factor complex; HET: NAG; 2.10A {Mus musculus} SCOP: b.6.1.5 PDB: 1shw_A* 3mx0_B*

Probab=96.18  E-value=0.0053  Score=43.78  Aligned_cols=75  Identities=21%  Similarity=0.380  Sum_probs=44.9

Q ss_pred             CeeeeCCEEEEE---eCC-------CCCeEEEECcCCCCCCCCCCCC-c------ccc-cCCcEE--------------E
Q 048131           49 KTFKCGDILEFN---YDP-------QRHNVIIVDQEGHDSCKPASDA-K------KFQ-TGKDQI--------------V   96 (124)
Q Consensus        49 ~~f~vGD~L~F~---y~~-------~~h~V~~V~~~~y~~C~~~~~~-~------~~~-~G~~~v--------------~   96 (124)
                      ..+++||.|-+-   |+.       ....+++|++++|++|+..+.. .      +.. .++..|              .
T Consensus        23 i~V~i~D~lDIiCP~~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~~~~C~~P~~p~~~~kftikFq~fsP~p~G~E  102 (138)
T 1shx_A           23 IDVCINDYLDVFCPHYEDSVPEDKTERYVLYMVNFDGYSACDHTSKGFKRWECNRPHSPNGPLKFSEKFQLFTPFSLGFE  102 (138)
T ss_dssp             EEECTTCEEEEECCCCCTTCCSTTCCCEEEEEECHHHHHTTCSSSSEEEEEEECCTTCTTSSCEEEEECCSCCSSTTCCC
T ss_pred             EEecCCCEEEEECCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCCEEEEeCCCCCCCCCeEEEEEEEEcCCCCCcee
Confidence            457889999775   331       1456789999999999875421 1      111 133222              2


Q ss_pred             eCCc-ceEEEeCCCCCccCCC--cEEEEEeC
Q 048131           97 LNHG-KNFFICGVPTHCSDHG--MKLEINVE  124 (124)
Q Consensus        97 l~~G-~~yfic~~~~hC~~~G--mKl~I~V~  124 (124)
                      +.|| .||||++=.++=. .|  |||.|.|.
T Consensus       103 F~pG~~YY~ISts~~~~~-g~~ClrL~V~V~  132 (138)
T 1shx_A          103 FRPGREYFYISSAIPDNG-RRSCLKLKVFVR  132 (138)
T ss_dssp             CCTTEEEEEEEEESSCCS-CSCCCEEEEEEC
T ss_pred             ecCCCeEEEEEcCCCCCC-CCceeEEEEEEE
Confidence            3366 5778865332211 23  89999873

>2cua_A Protein (CUA); CUA center, electron transport; 1.60A {Thermus thermophilus} SCOP: b.6.1.2 PDB: 2fwl_B*

Probab=96.08  E-value=0.025  Score=39.59  Aligned_cols=66  Identities=18%  Similarity=0.239  Sum_probs=43.2

Q ss_pred             CCeeeeCCEEEEEeCCC--CCeEEEECcCCCCCCCCCCCCcccccCC---cEEEeC-CcceEEEeCCCCCccC--CCcEE
Q 048131           48 GKTFKCGDILEFNYDPQ--RHNVIIVDQEGHDSCKPASDAKKFQTGK---DQIVLN-HGKNFFICGVPTHCSD--HGMKL  119 (124)
Q Consensus        48 ~~~f~vGD~L~F~y~~~--~h~V~~V~~~~y~~C~~~~~~~~~~~G~---~~v~l~-~G~~yfic~~~~hC~~--~GmKl  119 (124)
                      ..++.+||++.|..++.  .|++..-   ++.      .......|.   -.++++ ||.|+|.|+.  +|-.  .+|+.
T Consensus        61 ~l~Vp~G~~V~~~vts~DV~Hsf~ip---~~~------~k~d~~PG~~~~~~~~~~~~G~y~~~C~e--~CG~~H~~M~g  129 (135)
T 2cua_A           61 PIEVPQGAEIVFKITSPDVIHGFHVE---GTN------INVEVLPGEVSTVRYTFKRPGEYRIICNQ--YCGLGHQNMFG  129 (135)
T ss_dssp             SEEEETTSEEEEEEEBSSSCEEEEET---TSS------CEEEECBTBCEEEEEECCSCEEEEEECCS--CCSTTSTTCEE
T ss_pred             EEEEcCCCEEEEEEEeCCccceEEec---CCC------ceeEeCCCCcEEEEEEcCCCEEEEEECcc--cCCCCcCCCEE
Confidence            57899999999998643  5776541   111      001122343   356677 8999999987  3431  57999


Q ss_pred             EEEeC
Q 048131          120 EINVE  124 (124)
Q Consensus       120 ~I~V~  124 (124)
                      .|.|+
T Consensus       130 ~v~V~  134 (135)
T 2cua_A          130 TIVVK  134 (135)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99874

>2vsm_B Ephrin-B2; developmental protein, henipavirus, neurogenesis, glycoprotein, paramyxovirus, envelope protein, cell surface receptor, hendra, virion; HET: NAG; 1.80A {Homo sapiens} PDB: 2wo2_B* 2i85_A 3gxu_B 2vsk_B 2hle_B 1kgy_E

Probab=96.07  E-value=0.0054  Score=43.79  Aligned_cols=74  Identities=18%  Similarity=0.322  Sum_probs=46.9

Q ss_pred             eeeCCEEEEEeC---CC------CCeEEEECcCCCCCCCCCC-CCcccc----cCCcE--------------EEeCCc-c
Q 048131           51 FKCGDILEFNYD---PQ------RHNVIIVDQEGHDSCKPAS-DAKKFQ----TGKDQ--------------IVLNHG-K  101 (124)
Q Consensus        51 f~vGD~L~F~y~---~~------~h~V~~V~~~~y~~C~~~~-~~~~~~----~G~~~--------------v~l~~G-~  101 (124)
                      +++||.|-+-=+   .+      ...+++|++++|++|+... +...+.    .+...              +.+.|| .
T Consensus        25 v~i~D~ldIiCP~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~~~~C~~P~~~~kft~kFq~fsP~~~G~eF~~g~~  104 (140)
T 2vsm_B           25 PQIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKENTPLLNCAKPDQDIKFTIKFQEFSPNLWGLEFQKNKD  104 (140)
T ss_dssp             CCTTCEEEEEECCCC---CCCCCBEEEEEECHHHHHHTBCCTTCCCSEEECCTTSCEEEEEESSSCCSCSSCCCCCTTEE
T ss_pred             ecCCCEEEEECCCCCCCCCCCceEEEEEEECHHHhhhcccCCCCcEEEEecCCCCCEEEEEEEEecCCCCCcccccCCCc
Confidence            457999988633   21      3678889999999998763 221110    12222              223366 5


Q ss_pred             eEEEeCCC-----------CCccCCCcEEEEEeC
Q 048131          102 NFFICGVP-----------THCSDHGMKLEINVE  124 (124)
Q Consensus       102 ~yfic~~~-----------~hC~~~GmKl~I~V~  124 (124)
                      ||||++=.           |-|....|||.|.|.
T Consensus       105 YY~Ists~g~~~gl~~~~gG~C~t~~mkl~i~V~  138 (140)
T 2vsm_B          105 YYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVG  138 (140)
T ss_dssp             EEEECCCCBSGGGTTCCBSHHHHHSCCEEEEEET
T ss_pred             eEEEecCCCCccccccccCCccccceEEEEEEec
Confidence            77776622           479977999999884

>3czu_B Ephrin-A1; ATP-binding, kinase, nucleotide-binding, receptor, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG MAN; 2.65A {Homo sapiens} PDB: 3mbw_B*

Probab=95.93  E-value=0.0061  Score=45.35  Aligned_cols=61  Identities=16%  Similarity=0.314  Sum_probs=33.8

Q ss_pred             HhhcccceeEEEEecCCCCCCccccCC---CCCCeeeeCCEEEEE---eCCC--------CCeEEEECcCCCCCCCCCC
Q 048131           19 LMHCNIGSATTFKVGDDGGWVFGVQNW---PEGKTFKCGDILEFN---YDPQ--------RHNVIIVDQEGHDSCKPAS   83 (124)
Q Consensus        19 ~~~~~~a~a~~~~VG~~~gW~~~~~~W---a~~~~f~vGD~L~F~---y~~~--------~h~V~~V~~~~y~~C~~~~   83 (124)
                      ++.++.+++..+.|    =|+..-...   --...+++||.|-+-   |+.+        ...+++|++++|++|+..+
T Consensus        21 ~~~~~~~sa~rh~V----yWNSsNp~F~~~~y~i~V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~Vs~e~y~sC~~~~   95 (182)
T 3czu_B           21 YFQGAMDAADRHTV----FWNSSNPKFRNEDYTIHVQLNDYVDIICPHYEDHSVADAAMEQYILYLVEHEEYQLCQPQS   95 (182)
T ss_dssp             --------CCEEEE----ECSTTCGGGTTSCCEEEECTTCEEEEECCCCC--CCCGGGSCCEEEEEECHHHHHHTCCCC
T ss_pred             HHhhhhhhccccce----EEcCCCccccCCCceEEeccCCEEEEECCCCCCCCCCCCCceEEEEEEECHHHhhhccCCC
Confidence            34444455666665    476431111   123467899999775   3321        3567899999999998763

>3s8f_B Cytochrome C oxidase subunit 2; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 1ehk_B* 2qpd_B* 3qjq_B* 3qjr_B* 3qju_B* 3qjv_B* 1xme_B* 3s8g_B* 4esl_B* 4ev3_B* 4f05_B* 4fa7_B* 4faa_B* 3qjs_B* 3bvd_B* 2qpe_B* 3qjt_B* 3s3b_B* 3s33_B* 3s39_B* ...

Probab=95.17  E-value=0.067  Score=38.98  Aligned_cols=68  Identities=16%  Similarity=0.168  Sum_probs=43.6

Q ss_pred             CCCeeeeCCEEEEEeCCC--CCeEEEECcCCCCCCCCCCCCcccccCC---cEEEeC-CcceEEEeCC-CCCccCCCcEE
Q 048131           47 EGKTFKCGDILEFNYDPQ--RHNVIIVDQEGHDSCKPASDAKKFQTGK---DQIVLN-HGKNFFICGV-PTHCSDHGMKL  119 (124)
Q Consensus        47 ~~~~f~vGD~L~F~y~~~--~h~V~~V~~~~y~~C~~~~~~~~~~~G~---~~v~l~-~G~~yfic~~-~~hC~~~GmKl  119 (124)
                      ....+.+|+.+.|.-++.  .|+...-   ++.      -......|.   ..++.+ ||.||+.|+. .|+-- ++|+.
T Consensus        93 n~l~VP~G~~Vr~~vTS~DViHsf~IP---~lg------ik~da~PG~~n~~~~~~~kpG~y~g~Cse~CG~~H-s~M~g  162 (168)
T 3s8f_B           93 NPIEVPQGAEIVFKITSPDVIHGFHVE---GTN------INVEVLPGEVSTVRYTFKRPGEYRIICNQYCGLGH-QNMFG  162 (168)
T ss_dssp             SSEEEETTSEEEEEEECSSSCEEEEET---TSS------CEEEECTTBCEEEEEECCSCEEEEEECCSCCSTTG-GGCEE
T ss_pred             CEEEEeCCCeEEEEEecCCceEEEEEC---CCC------eEEEecCCceeEEEEEeCCCEEEEEECCcCCCCCc-CCCEE
Confidence            346788999999987653  4666542   111      001112233   356667 9999999996 34444 67999


Q ss_pred             EEEeC
Q 048131          120 EINVE  124 (124)
Q Consensus       120 ~I~V~  124 (124)
                      .|.|+
T Consensus       163 ~V~V~  167 (168)
T 3s8f_B          163 TIVVK  167 (168)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            99985

>3fsa_A Azurin; copper, cupredoxin fold, metal-binding, protein-protein interaction, metal binding protein; 0.98A {Pseudomonas aeruginosa} SCOP: b.6.1.1 PDB: 2xv2_A 2xv0_A 3fs9_A 2fta_A* 2hx7_A 2hx8_A 2hx9_A 2hxa_A 1cc3_A 2ft6_A 2ft7_A 2ft8_A 1azn_A 3n2j_A 2iwe_A 2ghz_A 2gi0_A 1jzg_A* 1azu_A* 1bex_A ...

Probab=94.45  E-value=0.4  Score=33.35  Aligned_cols=84  Identities=14%  Similarity=0.253  Sum_probs=48.3

Q ss_pred             ecCCCCCCccccCCCCCCeeee-CCEEEEEeCC-C-------CCeEEEECcC----------------CCCCCCCCCCC-
Q 048131           32 VGDDGGWVFGVQNWPEGKTFKC-GDILEFNYDP-Q-------RHNVIIVDQE----------------GHDSCKPASDA-   85 (124)
Q Consensus        32 VG~~~gW~~~~~~Wa~~~~f~v-GD~L~F~y~~-~-------~h~V~~V~~~----------------~y~~C~~~~~~-   85 (124)
                      |-.++...+.++    ..++.. |+++.|.+.+ +       .|+++..+.+                +|-.=+.++-+ 
T Consensus         7 i~~~d~M~F~p~----~i~V~~~Ge~V~~~l~N~G~~p~~~M~Hn~Vl~~~~~~~~~~~~~m~~~~~~~y~~~~d~~via   82 (125)
T 3fsa_A            7 IQGNDQMQFNTN----AITVDKSCKQFTVNLSHPGNLPKNVMGHNWVLSTAADMQGVVTDGMASGLDKDYLKPDDSRVIA   82 (125)
T ss_dssp             EEBCTTSCBSCS----EEEECTTCSEEEEEEECCSSCCHHHHCBCCEEEEHHHHHHHHHHHHHHCGGGTTSCTTCTTCCE
T ss_pred             EEccCCcEEecC----EEEEecCCCEEEEEEEECCcccccccCceEEEcccchHHHHHHHHHhcChhhccCCCCCcccee
Confidence            333445555543    245543 9998777753 3       3999987422                23211111111 


Q ss_pred             --cccccCCc-EEEeC-C-----cceEEEeCCCCCccCCCcEEEEEeC
Q 048131           86 --KKFQTGKD-QIVLN-H-----GKNFFICGVPTHCSDHGMKLEINVE  124 (124)
Q Consensus        86 --~~~~~G~~-~v~l~-~-----G~~yfic~~~~hC~~~GmKl~I~V~  124 (124)
                        .....|.+ +++++ |     |.|-|+|+  +|=   |||-.|.|.
T Consensus        83 ~t~~l~pGes~~vtf~~~~l~~~G~y~f~C~--gH~---~M~G~v~V~  125 (125)
T 3fsa_A           83 HTKLIGSGEKDSVTFDVSKLKEGEQYMFFCA--AHA---AMKGTLTLK  125 (125)
T ss_dssp             ECCCBCTTCEEEEEEEGGGC---CCEEEECS--SST---TCEEEEEEC
T ss_pred             ccceeCCCcEEEEEEeCcCcCCCccEEEEcC--CCC---CcEEEEEEC
Confidence              12344543 56655 4     99999999  674   899999884

>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans}

Probab=94.37  E-value=0.035  Score=44.89  Aligned_cols=74  Identities=18%  Similarity=0.252  Sum_probs=47.4

Q ss_pred             CCCCeeeeCCEEEEEeCCC---CCeEEEECcCCCCCCCCCCCCcccccCCcEEEeC-CcceEEEeCCCCCccCCCcEEEE
Q 048131           46 PEGKTFKCGDILEFNYDPQ---RHNVIIVDQEGHDSCKPASDAKKFQTGKDQIVLN-HGKNFFICGVPTHCSDHGMKLEI  121 (124)
Q Consensus        46 a~~~~f~vGD~L~F~y~~~---~h~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~l~-~G~~yfic~~~~hC~~~GmKl~I  121 (124)
                      ....+++.||+++|++.+.   .|++..-.......|-    +..-.+-.-.|+++ +|+++|.|..++|=. .||+..|
T Consensus        54 ~p~i~v~~Gd~v~~~~~N~~~~~h~~~~~g~~~~~~~~----i~pG~~~~~~f~~~~~Gt~~y~~~~~~h~~-~Gm~G~i  128 (447)
T 2dv6_A           54 NPTLVVHEGETVQVNLVNGEGAQHDVVVDQYAARSAIV----NGKNASSTFSFVASKVGEFNYYCSIAGHRQ-AGMEGNI  128 (447)
T ss_dssp             SCCEEEETTCEEEEEEECSSSSCBCCEETTTTEECCCB----CSTTBEEEEEEECCSCEEEEEECCSTTHHH-HTCEEEE
T ss_pred             CCeEEEcCCCEEEEEEEcCCCCceEEEEccCCccccee----cCCCCeEEEEEEcCCCEEEEEEeCCCChhh-CCCEEEE
Confidence            4557899999999988642   3776432211111222    11111112245556 899999999999988 8999998


Q ss_pred             EeC
Q 048131          122 NVE  124 (124)
Q Consensus       122 ~V~  124 (124)
                      .|+
T Consensus       129 ~V~  131 (447)
T 2dv6_A          129 QVL  131 (447)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            874

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=93.79  E-value=0.11  Score=45.06  Aligned_cols=66  Identities=21%  Similarity=0.349  Sum_probs=43.8

Q ss_pred             CCeeeeCCEEEEEeCCC------CCeEEEECcCCCCCCCCCCCCcccccCC---cEEEeC-CcceEEEeCCCCCccC--C
Q 048131           48 GKTFKCGDILEFNYDPQ------RHNVIIVDQEGHDSCKPASDAKKFQTGK---DQIVLN-HGKNFFICGVPTHCSD--H  115 (124)
Q Consensus        48 ~~~f~vGD~L~F~y~~~------~h~V~~V~~~~y~~C~~~~~~~~~~~G~---~~v~l~-~G~~yfic~~~~hC~~--~  115 (124)
                      ..++.+||++.|..++.      .|+...-+   +.      .......|.   ..|+.+ ||.|+|.|+.  .|-.  .
T Consensus       559 eI~VP~GdtVrfiLTN~D~veDViHSF~IPs---lG------IK~DaiPGrtnsvtFtadkPGvY~y~CSE--~CGa~Hs  627 (638)
T 3sbq_A          559 EFTVKQGDEVTVTITNIDQIEDVSHGFVVVN---HG------VSMEISPQQTSSITFVADKPGLHWYYCSW--FCHALHM  627 (638)
T ss_dssp             EEEEETTCEEEEEEEECCCSTTCCEEEEETT---TT------EEEEECTTCEEEEEEECCSCEEEEEECCS--CCSTTCT
T ss_pred             EEEEecCceeEEEEecCCcCCCceeeeEecC---CC------ceeeeCCCCeEEEEEEcCCCEEEEEECCC--cCCCCcc
Confidence            46899999999987652      58776521   11      001122343   256667 9999999998  5661  3


Q ss_pred             CcEEEEEeC
Q 048131          116 GMKLEINVE  124 (124)
Q Consensus       116 GmKl~I~V~  124 (124)
                      +|+..|.||
T Consensus       628 ~M~G~ViVE  636 (638)
T 3sbq_A          628 EMVGRMMVE  636 (638)
T ss_dssp             TCEEEEEEE
T ss_pred             cceEEEEEe
Confidence            499999985

>3l6w_A Hemocyanin 1; cupredoxin domain, copper-binding protein, metal-binding, oxygen binding; 4.00A {Megathura crenulata} PDB: 3qjo_A

Probab=91.53  E-value=0.13  Score=43.38  Aligned_cols=75  Identities=12%  Similarity=0.173  Sum_probs=48.5

Q ss_pred             CeeeeCCEEEEEeCCC--CCeEEEE-CcCCCCCCCCCCCCcccccCCcEEEeCCcceEEEeCCCCCccCCCc-EEEEEeC
Q 048131           49 KTFKCGDILEFNYDPQ--RHNVIIV-DQEGHDSCKPASDAKKFQTGKDQIVLNHGKNFFICGVPTHCSDHGM-KLEINVE  124 (124)
Q Consensus        49 ~~f~vGD~L~F~y~~~--~h~V~~V-~~~~y~~C~~~~~~~~~~~G~~~v~l~~G~~yfic~~~~hC~~~Gm-Kl~I~V~  124 (124)
                      .-++.|..|.|.=-..  ...+..+ +-.+...|..+-.....-.=+.+..|.||.|||..+...-|+ +|- |+.|.||
T Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  491 (491)
T 3l6w_A          413 VVVKRGTKIMFMSVDEAVTTPMLNLGSYTAMFKCKVPPFSFHAFELGKMYSVESGDYFMTASTTELCN-DNNLRIHVHVD  491 (491)
T ss_pred             eEeecCCEEEEEecccchhhHHHhhhhhhhhhccccCCCccCcccccceEecCCCceEecCChHHHHh-CCceeEEEEeC
Confidence            4577888888854321  1122222 334445688763321111123467788999999999999999 887 9999997

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=91.42  E-value=0.39  Score=41.28  Aligned_cols=66  Identities=21%  Similarity=0.266  Sum_probs=42.5

Q ss_pred             CCeeeeCCEEEEEeCCC------CCeEEEECcCCCCCCCCCCCCcccccCCc---EEEeC-CcceEEEeCCCCCccC--C
Q 048131           48 GKTFKCGDILEFNYDPQ------RHNVIIVDQEGHDSCKPASDAKKFQTGKD---QIVLN-HGKNFFICGVPTHCSD--H  115 (124)
Q Consensus        48 ~~~f~vGD~L~F~y~~~------~h~V~~V~~~~y~~C~~~~~~~~~~~G~~---~v~l~-~G~~yfic~~~~hC~~--~  115 (124)
                      ..++++||++.|...+.      .|++..-+ ...        ......|.+   .|+++ ||.|||.|..  +|-.  .
T Consensus       514 ~I~V~~Gd~V~~~ltN~d~~~Dv~Hgf~ip~-~gv--------~~~i~PG~t~t~~Fta~~pGtY~yhC~e--~Cg~~H~  582 (595)
T 1fwx_A          514 SFTVKEGDEVTVIVTNLDEIDDLTHGFTMGN-YGV--------AMEIGPQMTSSVTFVAANPGVYWYYCQW--FCHALHM  582 (595)
T ss_dssp             EEEEETTCEEEEEEEECCCSTTCCEEEEETT-TTE--------EEEECTTCEEEEEEECCSCEEEEEECCS--CCSTTCT
T ss_pred             EEEEECCCEEEEEEEeCCCCCCceeeEEecC-CCc--------ceeeCCCCeEEEEEECCCCEEEEEECCC--CCCCCcc
Confidence            46789999999997641      57776422 111        012223432   56677 9999999995  2321  5


Q ss_pred             CcEEEEEeC
Q 048131          116 GMKLEINVE  124 (124)
Q Consensus       116 GmKl~I~V~  124 (124)
                      ||+..|.|+
T Consensus       583 gM~G~IiV~  591 (595)
T 1fwx_A          583 EMRGRMLVE  591 (595)
T ss_dssp             TCEEEEEEE
T ss_pred             CCEEEEEEE
Confidence            899999884

>3hei_B Ephrin-A1; EPH receptor tyrosine kinase, cell membrane, disulfi glycoprotein, GPI-anchor, lipoprotein, membrane, ATP-bindin kinase; 2.00A {Homo sapiens} SCOP: b.6.1.0

Probab=91.32  E-value=0.19  Score=35.48  Aligned_cols=35  Identities=17%  Similarity=0.323  Sum_probs=25.7

Q ss_pred             CeeeeCCEEEEEeC---CC--------CCeEEEECcCCCCCCCCCC
Q 048131           49 KTFKCGDILEFNYD---PQ--------RHNVIIVDQEGHDSCKPAS   83 (124)
Q Consensus        49 ~~f~vGD~L~F~y~---~~--------~h~V~~V~~~~y~~C~~~~   83 (124)
                      ..+++||.|-+-=+   .+        ...++.|++++|++|+..+
T Consensus        22 v~V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~Vs~~~y~~C~~~~   67 (132)
T 3hei_B           22 IHVQLNDYVDIICPHYEDHSVADAAMEQYILYLVEHEEYQLCQPQS   67 (132)
T ss_dssp             EEECTTCEEEEECCCCCTTSSCGGGCCCEEEEEECHHHHHHTCCSC
T ss_pred             EEeCCCCeEEEECCCCCCCCCCCCCccEEEEEEeCHHHhccccCCC
Confidence            45688999977432   21        3567899999999998764

>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating mechanism, electron oxidoreductase; 1.46A {Rhodobacter sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A 1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A

Probab=83.51  E-value=1.1  Score=34.78  Aligned_cols=73  Identities=19%  Similarity=0.206  Sum_probs=44.0

Q ss_pred             CCeeeeCCEEEEEeCCC-----CCeEEEECcCCCCCCCCCCCCcccccCCc---EEEeC-CcceEEEeCCCC-----Ccc
Q 048131           48 GKTFKCGDILEFNYDPQ-----RHNVIIVDQEGHDSCKPASDAKKFQTGKD---QIVLN-HGKNFFICGVPT-----HCS  113 (124)
Q Consensus        48 ~~~f~vGD~L~F~y~~~-----~h~V~~V~~~~y~~C~~~~~~~~~~~G~~---~v~l~-~G~~yfic~~~~-----hC~  113 (124)
                      ..+++.||+|++++.+.     .|.+..-...+.+.   ..+......|.+   .|+++ +|++||-|...+     |=.
T Consensus        65 ~i~~~~Gd~v~v~~~N~~~~~h~Hg~~~~~~~~~~~---~~~~~~i~PG~~~~y~f~~~~~Gt~~yH~h~~~~~~~~~~~  141 (333)
T 1mzy_A           65 LMIVHEGDYVELTLINPPENTMPHNIDFHAATGALG---GGGLTLINPGEKVVLRFKATRAGAFVYHCAPGGPMIPWHVV  141 (333)
T ss_dssp             EEEEETTCEEEEEEEECTTCCSCBCCEETTSCSGGG---GGGGCCBCTTEEEEEEEECCSCEEEEEECCCSTTHHHHHHH
T ss_pred             cEEecCCCEEEEEEEECCCCcccccceecCCCCCCC---CCceeEeCCCCEEEEEEECCCCEEEEEeecCCcccchhhhh
Confidence            46789999999988653     36665322111110   011112333433   55556 899999998764     666


Q ss_pred             CCCcEEEEEeC
Q 048131          114 DHGMKLEINVE  124 (124)
Q Consensus       114 ~~GmKl~I~V~  124 (124)
                       .||.-.+.|+
T Consensus       142 -~Gl~G~~iV~  151 (333)
T 1mzy_A          142 -SGMAGCIMVL  151 (333)
T ss_dssp             -TTCEEEEEEE
T ss_pred             -CCCEEEEEEc
Confidence             7998887763

>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification; HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3 b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A 1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A* 2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X* 2jl3_A* ...

Probab=83.32  E-value=1.3  Score=34.30  Aligned_cols=73  Identities=18%  Similarity=0.254  Sum_probs=43.5

Q ss_pred             CCeeeeCCEEEEEeCCC-----CCeEEEECcCCCCCCCCCCCCcccccCCc---EEEeC-CcceEEEeCCCC----CccC
Q 048131           48 GKTFKCGDILEFNYDPQ-----RHNVIIVDQEGHDSCKPASDAKKFQTGKD---QIVLN-HGKNFFICGVPT----HCSD  114 (124)
Q Consensus        48 ~~~f~vGD~L~F~y~~~-----~h~V~~V~~~~y~~C~~~~~~~~~~~G~~---~v~l~-~G~~yfic~~~~----hC~~  114 (124)
                      ..+++.||+|++++.+.     .|++..=.....+   ...+......|.+   .|+++ +|++||-|...+    |=. 
T Consensus        66 ~i~v~~Gd~v~v~~~N~~~~~~~h~~~~h~~~~~~---~~~~~~~i~pG~~~~y~f~~~~~Gt~~yH~h~~~~~~~~~~-  141 (336)
T 1oe1_A           66 TLVVHEGDYVQLTLVNPATNAMPHNVDFHGATGAL---GGAKLTNVNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVV-  141 (336)
T ss_dssp             CEEEETTCEEEEEEEECTTCCSCBCCEETTSCSGG---GGGGGCCBCTTEEEEEEEECCSCEEEEEECCCTTCHHHHHH-
T ss_pred             eEEEcCCCEEEEEEEcCCCCCccccceECCCCCCC---CCcceEEeCCCCEEEEEEECCCCeEEEEecCCCCchhHHHh-
Confidence            46789999999888642     4665442111000   0011112333433   45556 899999999754    445 


Q ss_pred             CCcEEEEEeC
Q 048131          115 HGMKLEINVE  124 (124)
Q Consensus       115 ~GmKl~I~V~  124 (124)
                      .||.-.+.|+
T Consensus       142 ~Gl~G~liV~  151 (336)
T 1oe1_A          142 SGMSGTLMVL  151 (336)
T ss_dssp             TTCEEEEEEE
T ss_pred             CCCeEEEEEe
Confidence            7999888773

>1kbv_A ANIA, major outer membrane protein PAN 1; ANIA[NO2-], oxidoreductase; 1.95A {Neisseria gonorrhoeae} SCOP: b.6.1.3 b.6.1.3 PDB: 1kbw_A

Probab=80.70  E-value=1.3  Score=34.39  Aligned_cols=74  Identities=26%  Similarity=0.332  Sum_probs=41.7

Q ss_pred             CCCeeeeCCEEEEEeCCC-----CCeEEEECcCCCCCCCCCCCCcccccCCc---EEEeC-CcceEEEeCCC---CCccC
Q 048131           47 EGKTFKCGDILEFNYDPQ-----RHNVIIVDQEGHDSCKPASDAKKFQTGKD---QIVLN-HGKNFFICGVP---THCSD  114 (124)
Q Consensus        47 ~~~~f~vGD~L~F~y~~~-----~h~V~~V~~~~y~~C~~~~~~~~~~~G~~---~v~l~-~G~~yfic~~~---~hC~~  114 (124)
                      ...+++.||++++++.+.     .|++..=-....|.  .+. ......|.+   .|+.+ +|++||-|...   .|=. 
T Consensus        70 P~i~v~~Gd~v~v~~~N~~~~~~~~~ih~HG~~~~dG--~~~-~~~i~PG~~~~y~f~~~~~Gt~wyH~h~~~~~~~~~-  145 (327)
T 1kbv_A           70 RMIRVREGDTVEVEFSNNPSSTVPHNVDFHAATGQGG--GAA-ATFTAPGRTSTFSFKALQPGLYIYHCAVAPVGMHIA-  145 (327)
T ss_dssp             CBEEEETTCEEEEEEEECTTCSSCBCCEETTCCSGGG--GTT-TTCBCTTEEEEEEEECCSCEEEEEECCCSSHHHHHH-
T ss_pred             CeEEEeCCCEEEEEEEECCCCCCceeeEeCccccCCC--CCc-ceeecCCCEEEEEEECCCCeEEEEEeCCCChhhhhh-
Confidence            346889999999987643     35543210000110  000 111233432   45556 89999999753   3445 


Q ss_pred             CCcEEEEEeC
Q 048131          115 HGMKLEINVE  124 (124)
Q Consensus       115 ~GmKl~I~V~  124 (124)
                      .||...|.|+
T Consensus       146 ~Gl~G~~iV~  155 (327)
T 1kbv_A          146 NGMYGLILVE  155 (327)
T ss_dssp             TTCEEEEEEE
T ss_pred             cceEEEEEEe
Confidence            7999888764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	124
d2cbpa_	96	b.6.1.1 (A:) Plantacyanin {Cucumber (Cucumis sativ	3e-36
d1ws8a_	104	b.6.1.1 (A:) Mavicyanin {Zucchini (Cucurbita pepo)	2e-32
d1f56a_	91	b.6.1.1 (A:) Plantacyanin {Spinach (Spinacia olera	4e-32
d1jera_	110	b.6.1.1 (A:) Stellacyanin {Cucumber (Cucumis sativ	2e-27

>d2cbpa_ b.6.1.1 (A:) Plantacyanin {Cucumber (Cucumis sativus) [TaxId: 3659]} Length = 96

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plantacyanin
species: Cucumber (Cucumis sativus) [TaxId: 3659]

 Score =  117 bits (294), Expect = 3e-36
 Identities = 44/95 (46%), Positives = 63/95 (66%), Gaps = 1/95 (1%)

Query: 29  TFKVGDDGGWVFGVQNWPEGKTFKCGDILEFNYDPQRHNVIIVDQEGHDSCKPASDAKKF 88
            + VG  GGW F  ++WP+GK F+ GDIL FNY+P  HNV++V+Q G  +C   + AK +
Sbjct: 2   VYVVGGSGGWTFNTESWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNTPAGAKVY 61

Query: 89  QTGKDQIVLNHGKNFFICGVPTHCSDHGMKLEINV 123
            +G+DQI L  G+++FIC  P HC   GMK+ +N 
Sbjct: 62  TSGRDQIKLPKGQSYFICNFPGHCQ-SGMKIAVNA 95

>d1ws8a_ b.6.1.1 (A:) Mavicyanin {Zucchini (Cucurbita pepo) [TaxId: 3663]} Length = 104

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Mavicyanin
species: Zucchini (Cucurbita pepo) [TaxId: 3663]

 Score =  108 bits (270), Expect = 2e-32
 Identities = 44/103 (42%), Positives = 55/103 (53%), Gaps = 6/103 (5%)

Query: 27  ATTFKVGDDGGWVFGV----QNWPEGKTFKCGDILEFNYDPQRHNVIIVDQEGHDSCKPA 82
           AT  KVGD  GW   V      W     F  GD L FNY+ + HNV+ VDQE   SC  +
Sbjct: 2   ATVHKVGDSTGWTTLVPYDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNSS 61

Query: 83  SDAKKFQTGKDQIVLNH-GKNFFICGVPTHCSDHGMKLEINVE 124
           S A  + +G D I L   G  +F+CG+P HC   G K+EI V+
Sbjct: 62  SPAASYTSGADSIPLKRPGTFYFLCGIPGHCQ-LGQKVEIKVD 103

>d1f56a_ b.6.1.1 (A:) Plantacyanin {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 91

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plantacyanin
species: Spinach (Spinacia oleracea) [TaxId: 3562]

 Score =  106 bits (267), Expect = 4e-32
 Identities = 38/88 (43%), Positives = 54/88 (61%), Gaps = 2/88 (2%)

Query: 37  GWVFGVQNWPEGKTFKCGDILEFNYDPQRHNVIIVDQEGHDSCKPASDAKKFQTGKDQIV 96
           GW F V N   GK+F+ GD+L F Y   +HNV+ V+  G+ SC     A+ + +G+D+I 
Sbjct: 6   GWSFNV-NGARGKSFRAGDVLVFKYIKGQHNVVAVNGRGYASCSAPRGARTYSSGQDRIK 64

Query: 97  LNHGKNFFICGVPTHCSDHGMKLEINVE 124
           L  G+N+FIC  P HC   GMK+ IN +
Sbjct: 65  LTRGQNYFICSFPGHCG-GGMKIAINAK 91

>d1jera_ b.6.1.1 (A:) Stellacyanin {Cucumber (Cucumis sativus) [TaxId: 3659]} Length = 110

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Stellacyanin
species: Cucumber (Cucumis sativus) [TaxId: 3659]

 Score = 95.4 bits (237), Expect = 2e-27
 Identities = 36/106 (33%), Positives = 53/106 (50%), Gaps = 9/106 (8%)

Query: 26  SATTFKVGDDGGWVFGV-----QNWPEGKTFKCGDILEFNYDPQRHNVIIVD-QEGHDSC 79
            +T   VGD+ GW           W  GKTF+ GD L+FN+    HNV  ++ ++  D+C
Sbjct: 2   QSTVHIVGDNTGWSVPSSPNFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDAC 61

Query: 80  KPASDAKKFQTGKD-QIVLNH-GKNFFICGVPTHCSDHGMKLEINV 123
              +     +        L+  G ++F+C V THCS +G KL INV
Sbjct: 62  NFVNSDNDVERTSPVIERLDELGMHYFVCTVGTHCS-NGQKLSINV 106

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	124
d2cbpa_	96	Plantacyanin {Cucumber (Cucumis sativus) [TaxId: 3	100.0
d1ws8a_	104	Mavicyanin {Zucchini (Cucurbita pepo) [TaxId: 3663	100.0
d1f56a_	91	Plantacyanin {Spinach (Spinacia oleracea) [TaxId:	100.0
d1jera_	110	Stellacyanin {Cucumber (Cucumis sativus) [TaxId: 3	100.0
d1iuza_	98	Plastocyanin {Ulva pertusa, a sea lettuce [TaxId:	99.01
d1bypa_	99	Plastocyanin {White campion (Silene pratensis) [Ta	98.99
d2plta_	98	Plastocyanin {Green alga (Chlamydomonas reinhardti	98.94
d1kdja_	102	Plastocyanin {Fern (Adiantum capillus-veneris) [Ta	98.94
d2cj3a1	105	Plastocyanin {Anabaena variabilis [TaxId: 1172]}	98.88
d2jxma1	97	Plastocyanin {Photosynthetic prokaryote (Prochloro	98.86
d1plca_	99	Plastocyanin {Poplar (Populus nigra), variant ital	98.79
d2q5ba1	105	Plastocyanin {Cyanobacterium (Phormidium laminosum	98.78
d1adwa_	123	Pseudoazurin {Thiosphaera pantotropha [TaxId: 8236	98.69
d1paza_	120	Pseudoazurin {Alcaligenes faecalis, strain s-6 [Ta	98.69
d1pcsa_	98	Plastocyanin {Cyanobacterium (Synechocystis sp.),	98.6
d1bqka_	124	Pseudoazurin {Achromobacter cycloclastes [TaxId: 2	98.58
d1bxua_	91	Plastocyanin {Cyanobacterium (Synechocystis sp.),	98.58
d1pmya_	123	Pseudoazurin {Methylobacterium extorquens, strain	98.56
d1qhqa_	139	Auracyanin {Chloroflexus aurantiacus [TaxId: 1108]	98.5
d2ov0a1	105	Amicyanin {Paracoccus denitrificans [TaxId: 266]}	98.11
d1cuoa_	129	Azurin {Methylomonas sp. j [TaxId: 32038]}	97.92
d1id2a_	106	Amicyanin {Paracoccus versutus (Thiobacillus versu	97.86
d1e30a_	153	Rusticyanin {Thiobacillus ferrooxidans [TaxId: 920	97.71
d2ccwa1	129	Azurin {Alcaligenes xylosoxidans, NCIMB (11015), d	97.53
d1ibya_	112	Red copper protein nitrosocyanin {Nitrosomonas eur	97.22
d1jzga_	128	Azurin {Pseudomonas aeruginosa [TaxId: 287]}	97.17
d1ikop_	141	Ephrin-b2 ectodomain {Mouse (Mus musculus) [TaxId:	96.8
d1shxa1	138	Ephrin-a5 {Mouse (Mus musculus) [TaxId: 10090]}	96.73
d1fwxa1	132	Nitrous oxide reductase, C-terminal domain {Paraco	96.71
d1nwpa_	128	Azurin {Pseudomonas putida [TaxId: 303]}	96.2
d2cuaa_	122	Cytochrome c oxidase {Thermus thermophilus, ba3 ty	96.09
d1qnia1	131	Nitrous oxide reductase, C-terminal domain {Pseudo	95.54
d1kbva1	151	Nitrite reductase, NIR {Neisseria gonorrhoeae, Ani	94.69
d1aoza1	129	Ascorbate oxidase {Zucchini (Cucurbita pepo var. m	94.27
d1oe2a1	159	Nitrite reductase, NIR {Alcaligenes xylosoxidans [	90.95
d1gyca1	130	Laccase {Trametes versicolor, laccase 2 [TaxId: 53	90.32
d2bw4a1	157	Nitrite reductase, NIR {Alcaligenes xylosoxidans [	88.35
d1mzya1	153	Nitrite reductase, NIR {Rhodobacter sphaeroides [T	88.07
d2q9oa1	162	Laccase {Melanocarpus albomyces [TaxId: 204285]}	84.22
d1hfua1	131	Laccase {Inky cap fungus (Coprinus cinereus) [TaxI	83.54

>d2cbpa_ b.6.1.1 (A:) Plantacyanin {Cucumber (Cucumis sativus) [TaxId: 3659]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plantacyanin
species: Cucumber (Cucumis sativus) [TaxId: 3659]

Probab=100.00  E-value=4.4e-42  Score=233.44  Aligned_cols=95  Identities=46%  Similarity=1.072  Sum_probs=92.5

Q ss_pred             EEEEecCCCCCCccccCCCCCCeeeeCCEEEEEeCCCCCeEEEECcCCCCCCCCCCCCcccccCCcEEEeCCcceEEEeC
Q 048131           28 TTFKVGDDGGWVFGVQNWPEGKTFKCGDILEFNYDPQRHNVIIVDQEGHDSCKPASDAKKFQTGKDQIVLNHGKNFFICG  107 (124)
Q Consensus        28 ~~~~VG~~~gW~~~~~~Wa~~~~f~vGD~L~F~y~~~~h~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~l~~G~~yfic~  107 (124)
                      ++|+|||+.||+++|++||++++|++||+|+|+|+++.|+|+||++++|++|+.++|+..+++|++.|+|++|++||||+
T Consensus         1 A~y~VGg~~GW~~~y~~Wa~~~~F~vGD~LvF~y~~~~h~V~~V~~~~Y~~C~~~~~~~~~~~G~~~v~L~~G~~YFic~   80 (96)
T d2cbpa_           1 AVYVVGGSGGWTFNTESWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNTPAGAKVYTSGRDQIKLPKGQSYFICN   80 (96)
T ss_dssp             CEEETTGGGCSCSSCTTTTTTCCBCTTCEEEEECCTTTCCEEEECHHHHHHTCCCTTCEEECSSEEEEECCSEEEEEECC
T ss_pred             CEEEcCCCCCCCcCHHHHhCCCcEecCCEEEEecCCCCceEEEEChHHcCccCCCCCcccccCCCeEEEeCCCCCEEEeC
Confidence            37999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccCCCcEEEEEe
Q 048131          108 VPTHCSDHGMKLEINV  123 (124)
Q Consensus       108 ~~~hC~~~GmKl~I~V  123 (124)
                      +++||+ +||||+|+|
T Consensus        81 ~~~hC~-~G~Kl~V~V   95 (96)
T d2cbpa_          81 FPGHCQ-SGMKIAVNA   95 (96)
T ss_dssp             STTTGG-GTCEEEEEE
T ss_pred             CCCcCc-CCCEEEEEE
Confidence            999999 999999998

>d1ws8a_ b.6.1.1 (A:) Mavicyanin {Zucchini (Cucurbita pepo) [TaxId: 3663]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Mavicyanin
species: Zucchini (Cucurbita pepo) [TaxId: 3663]

Probab=100.00  E-value=2.3e-39  Score=222.37  Aligned_cols=97  Identities=44%  Similarity=0.862  Sum_probs=92.9

Q ss_pred             eEEEEecCCCCCCc----cccCCCCCCeeeeCCEEEEEeCCCCCeEEEECcCCCCCCCCCCCCcccccCCcEEEeC-Ccc
Q 048131           27 ATTFKVGDDGGWVF----GVQNWPEGKTFKCGDILEFNYDPQRHNVIIVDQEGHDSCKPASDAKKFQTGKDQIVLN-HGK  101 (124)
Q Consensus        27 a~~~~VG~~~gW~~----~~~~Wa~~~~f~vGD~L~F~y~~~~h~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~l~-~G~  101 (124)
                      |++|+|||+.||+.    +|++|+++++|++||+|+|+|+++.|+|+||++++|++|+.++|+..+++|++.|+|+ ||+
T Consensus         2 at~~~VGg~~gW~~~~~~~Y~~Wa~~~~f~vGD~l~F~y~~~~h~V~~v~~~~y~~C~~~~~~~~~~~G~~~v~l~~~g~   81 (104)
T d1ws8a_           2 ATVHKVGDSTGWTTLVPYDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNSSSPAASYTSGADSIPLKRPGT   81 (104)
T ss_dssp             CCEEETTGGGCSCSSSCCCHHHHHHTSCBCTTCEEEEECCTTTCCEEEECHHHHHHTCCSSCSEEECSSEEEEECCSSEE
T ss_pred             CcEEEeCCcCccCcCCCcCHHHHhhCCcCCCCCEEEEEECCCCceEEEECHHHhcCCcCCCccccccCCCeEEEEecCcc
Confidence            68999999999985    3679999999999999999999999999999999999999999999999999999999 999


Q ss_pred             eEEEeCCCCCccCCCcEEEEEeC
Q 048131          102 NFFICGVPTHCSDHGMKLEINVE  124 (124)
Q Consensus       102 ~yfic~~~~hC~~~GmKl~I~V~  124 (124)
                      +||||++++||+ +||||.|+|+
T Consensus        82 ~yF~C~~~~HC~-~Gmkl~I~V~  103 (104)
T d1ws8a_          82 FYFLCGIPGHCQ-LGQKVEIKVD  103 (104)
T ss_dssp             EEEECCSTTTTT-TTCEEEEEEC
T ss_pred             EEEECCCcchhh-CCCEEEEEEC
Confidence            999999999999 9999999996

>d1f56a_ b.6.1.1 (A:) Plantacyanin {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plantacyanin
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=100.00  E-value=7e-36  Score=200.82  Aligned_cols=90  Identities=42%  Similarity=0.930  Sum_probs=84.9

Q ss_pred             EEEecCCCCCCccccCCCCCCeeeeCCEEEEEeCCCCCeEEEECcCCCCCCCCCCCCcccccCCcEEEeCCcceEEEeCC
Q 048131           29 TFKVGDDGGWVFGVQNWPEGKTFKCGDILEFNYDPQRHNVIIVDQEGHDSCKPASDAKKFQTGKDQIVLNHGKNFFICGV  108 (124)
Q Consensus        29 ~~~VG~~~gW~~~~~~Wa~~~~f~vGD~L~F~y~~~~h~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~l~~G~~yfic~~  108 (124)
                      +|.|    ||+++. +||++++|++||+|+|+|+++.|+|+||++++|++|+.++|+..+++|++.|+|++|++||||++
T Consensus         2 ~y~v----GW~~~~-~Wa~~~~F~vGD~LvF~y~~~~h~V~~v~~~~y~~C~~~~~~~~~~~G~~~v~l~~g~~yfic~~   76 (91)
T d1f56a_           2 VYNI----GWSFNV-NGARGKSFRAGDVLVFKYIKGQHNVVAVNGRGYASCSAPRGARTYSSGQDRIKLTRGQNYFICSF   76 (91)
T ss_dssp             EEEE----ECSSSC-BSCTTCCBCTTCEEEEECCBTTBCEEEECHHHHHTTCCCTTCEEECSSEEEEECCSEEEEEECCS
T ss_pred             EEcc----CCcccc-ccccCCCCcCCCEEEEEEcCCCCEEEEECHHHhCcCCCCCCcccccCCCeEEEeCCCCeEEEeCC
Confidence            5777    598754 59999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCccCCCcEEEEEeC
Q 048131          109 PTHCSDHGMKLEINVE  124 (124)
Q Consensus       109 ~~hC~~~GmKl~I~V~  124 (124)
                      ++||+ .||||.|+|+
T Consensus        77 ~~HC~-~Gmkl~I~V~   91 (91)
T d1f56a_          77 PGHCG-GGMKIAINAK   91 (91)
T ss_dssp             TTTTT-TTCEEEEEEC
T ss_pred             CCcCc-cCCEEEEEEC
Confidence            99999 9999999996

>d1jera_ b.6.1.1 (A:) Stellacyanin {Cucumber (Cucumis sativus) [TaxId: 3659]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Stellacyanin
species: Cucumber (Cucumis sativus) [TaxId: 3659]

Probab=100.00  E-value=1.3e-36  Score=209.89  Aligned_cols=98  Identities=37%  Similarity=0.705  Sum_probs=89.2

Q ss_pred             eeEEEEecCCCCCCcc-----ccCCCCCCeeeeCCEEEEEeCCCCCeEEEE-CcCCCCCCCCCCCCcccccC-CcEEEeC
Q 048131           26 SATTFKVGDDGGWVFG-----VQNWPEGKTFKCGDILEFNYDPQRHNVIIV-DQEGHDSCKPASDAKKFQTG-KDQIVLN   98 (124)
Q Consensus        26 ~a~~~~VG~~~gW~~~-----~~~Wa~~~~f~vGD~L~F~y~~~~h~V~~V-~~~~y~~C~~~~~~~~~~~G-~~~v~l~   98 (124)
                      +|++|+|||+.||+++     |++|+++++|++||+|+|+|+++.|+|+|| ++++|++|+.++++....+| ...++|+
T Consensus         2 ~at~~~VGg~~gW~~~~~~~~Y~~Wa~~~~f~vGD~l~F~~~~~~H~V~~v~~~~~y~~c~~~~~~~~~~~~~~~~~~l~   81 (110)
T d1jera_           2 QSTVHIVGDNTGWSVPSSPNFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACNFVNSDNDVERTSPVIERLD   81 (110)
T ss_dssp             CCCEEETTGGGCSSCCSSTTHHHHHHHTCCEETTCEEEECCCTTTCCCEEESCHHHHHHTCCTTSCCCCCCCSCEEEECC
T ss_pred             cceEEEeCCCCCcccCCCcchhhhhhcCCcEeCCCEEEEEeCCCCceEEEECCcccccccccCCccccccCCCcEEEEec
Confidence            5789999999999975     579999999999999999999999999999 69999999999988765554 5578898


Q ss_pred             -CcceEEEeCCCCCccCCCcEEEEEeC
Q 048131           99 -HGKNFFICGVPTHCSDHGMKLEINVE  124 (124)
Q Consensus        99 -~G~~yfic~~~~hC~~~GmKl~I~V~  124 (124)
                       ||++||||++++||+ +|||++|+|.
T Consensus        82 ~~G~~yF~C~~~~HC~-~Gmk~~I~V~  107 (110)
T d1jera_          82 ELGMHYFVCTVGTHCS-NGQKLSINVV  107 (110)
T ss_dssp             SSEEEEEECCSTTTGG-GTCEEEEEEE
T ss_pred             CCccEEEECCCcChhh-cCCEEEEEEe
Confidence             999999999999999 9999999984

>d1iuza_ b.6.1.1 (A:) Plastocyanin {Ulva pertusa, a sea lettuce [TaxId: 3120]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: Ulva pertusa, a sea lettuce [TaxId: 3120]

Probab=99.01  E-value=6.5e-10  Score=72.44  Aligned_cols=89  Identities=26%  Similarity=0.371  Sum_probs=56.5

Q ss_pred             eEEEEecCCCC-CCccccCCCCCCeeeeCCEEEEEeCCCC-CeEEEECcCCCCCCCCCCCCcc-----cccC-CcEEEeC
Q 048131           27 ATTFKVGDDGG-WVFGVQNWPEGKTFKCGDILEFNYDPQR-HNVIIVDQEGHDSCKPASDAKK-----FQTG-KDQIVLN   98 (124)
Q Consensus        27 a~~~~VG~~~g-W~~~~~~Wa~~~~f~vGD~L~F~y~~~~-h~V~~V~~~~y~~C~~~~~~~~-----~~~G-~~~v~l~   98 (124)
                      |....||.+.| -.+.|+    ..++.+||++.|.+..+. |++......  .......+...     ...+ ..+++++
T Consensus         1 a~~V~vg~~~g~~~F~P~----~i~i~~GdtV~f~n~~~~~h~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~f~   74 (98)
T d1iuza_           1 AQIVKLGGDDGSLAFVPS----KISVAAGEAIEFVNNAGFPHNIVFDEDA--VPAGVDADAISYDDYLNSKGETVVRKLS   74 (98)
T ss_dssp             CEEEEESCTTSCCSEESS----EEEECTTCEEEEEECSSCCEEEEECTTS--SCTTCCHHHHCEEEEECSTTCEEEEECC
T ss_pred             CeEEEEecCCCcEEEeCC----EEEECCCCEEEEEECCCCcccEEEeCCC--cccccccccccccCcccCCCcEEEEecC
Confidence            35667887654 444443    479999999999997654 555543211  11111111100     1111 2256777


Q ss_pred             -CcceEEEeCCCCCccCCCcEEEEEeC
Q 048131           99 -HGKNFFICGVPTHCSDHGMKLEINVE  124 (124)
Q Consensus        99 -~G~~yfic~~~~hC~~~GmKl~I~V~  124 (124)
                       ||+|+|+|..  ||. .||+..|+||
T Consensus        75 ~~G~y~y~C~~--H~~-~GM~G~I~Ve   98 (98)
T d1iuza_          75 TPGVYGVYCEP--HAG-AGMKMTITVQ   98 (98)
T ss_dssp             SCEEEEEECTT--TGG-GTCEEEEEEC
T ss_pred             CCceEEEEeCC--Ccc-CCCeEEEEEC
Confidence             8999999984  999 9999999997

>d1bypa_ b.6.1.1 (A:) Plastocyanin {White campion (Silene pratensis) [TaxId: 52853]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: White campion (Silene pratensis) [TaxId: 52853]

Probab=98.99  E-value=9e-10  Score=71.78  Aligned_cols=87  Identities=17%  Similarity=0.275  Sum_probs=54.3

Q ss_pred             EEEecCCC-CCCccccCCCCCCeeeeCCEEEEEeCCCCCeEEEECcCCCCCCCCCCCC---c-----ccccC-CcEEEeC
Q 048131           29 TFKVGDDG-GWVFGVQNWPEGKTFKCGDILEFNYDPQRHNVIIVDQEGHDSCKPASDA---K-----KFQTG-KDQIVLN   98 (124)
Q Consensus        29 ~~~VG~~~-gW~~~~~~Wa~~~~f~vGD~L~F~y~~~~h~V~~V~~~~y~~C~~~~~~---~-----~~~~G-~~~v~l~   98 (124)
                      +.+||.++ +-.+.|+    ..++++||+|.|.+..+.|.....+...  .+......   .     ....+ ..+++++
T Consensus         2 eV~vg~~~g~~~F~P~----~i~v~~GdtV~f~n~~~~~h~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~tf~   75 (99)
T d1bypa_           2 EVLLGSSDGGLAFVPS----DLSIASGEKITFKNNAGFPHNDLFDKKE--VPAGVDVTKISMPEEDLLNAPGEEYSVTLT   75 (99)
T ss_dssp             EEEESCTTSCCSEESS----EEEECTTEEEEEEECSSCCBCCEECTTS--SCTTCCHHHHSCCTTCCBCSTTCEEEEEEC
T ss_pred             EEEEEecCCceEEcCC----EEEECCCCEEEEEECCCCceeEEEecCC--CCCccccccCcccccccccCCCceEEEEec
Confidence            56778644 3554443    4789999999999986644444443221  11111100   0     01111 2367777


Q ss_pred             -CcceEEEeCCCCCccCCCcEEEEEeC
Q 048131           99 -HGKNFFICGVPTHCSDHGMKLEINVE  124 (124)
Q Consensus        99 -~G~~yfic~~~~hC~~~GmKl~I~V~  124 (124)
                       ||+|+|+|..  ||+ .||+-.|+|.
T Consensus        76 ~~G~y~y~C~~--H~~-~GM~G~I~V~   99 (99)
T d1bypa_          76 EKGTYKFYCAP--HAG-AGMVGKVTVN   99 (99)
T ss_dssp             SCEEEEEECGG--GTT-TTCEEEEEEC
T ss_pred             CCceEEEEECc--CCC-CCCEEEEEEC
Confidence             9999999984  999 9999999983

>d2plta_ b.6.1.1 (A:) Plastocyanin {Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.94  E-value=1.1e-09  Score=71.11  Aligned_cols=87  Identities=26%  Similarity=0.360  Sum_probs=55.7

Q ss_pred             EEEecCC-CCCCccccCCCCCCeeeeCCEEEEEeCCCCCeEEEECcCCCCCCCCCC-CC----cc-cccC-CcEEEeC-C
Q 048131           29 TFKVGDD-GGWVFGVQNWPEGKTFKCGDILEFNYDPQRHNVIIVDQEGHDSCKPAS-DA----KK-FQTG-KDQIVLN-H   99 (124)
Q Consensus        29 ~~~VG~~-~gW~~~~~~Wa~~~~f~vGD~L~F~y~~~~h~V~~V~~~~y~~C~~~~-~~----~~-~~~G-~~~v~l~-~   99 (124)
                      +..||.+ .+-.+.|    +..++.+||+|.|.+....|........+  .+.... +.    .. ...+ ..+++++ +
T Consensus         3 TV~vg~~~g~~~F~P----~~i~v~~GdtV~f~n~~~~~h~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~t~~~tf~~~   76 (98)
T d2plta_           3 TVKLGADSGALEFVP----KTLTIKSGETVNFVNNAGFPHNIVFDEDA--IPSGVNADAISRDDYLNAPGETYSVKLTAA   76 (98)
T ss_dssp             EEEESCTTCCSSEES----SEEEECTTCEEEEEECSSCCEEEEECGGG--SCTTCCHHHHCEEEEECSTTCEEEEECCSC
T ss_pred             EEEEeeCCCceEEeC----CEEEECCCCEEEEEECCCCceeEEEecCC--ccccccCCcccccccccCCCceEEEEecCC
Confidence            4567754 3455554    35799999999999886655555543222  122211 11    01 1112 2266777 8


Q ss_pred             cceEEEeCCCCCccCCCcEEEEEeC
Q 048131          100 GKNFFICGVPTHCSDHGMKLEINVE  124 (124)
Q Consensus       100 G~~yfic~~~~hC~~~GmKl~I~V~  124 (124)
                      |+|||+|..  ||+ .||+..|+||
T Consensus        77 G~y~y~C~~--H~~-~GM~G~I~Ve   98 (98)
T d2plta_          77 GEYGYYCEP--HQG-AGMVGKIIVQ   98 (98)
T ss_dssp             EEEEEECGG--GGG-GTCEEEEEEC
T ss_pred             ceEEEEeCc--CCC-CCCEEEEEEC
Confidence            999999984  999 9999999997

>d1kdja_ b.6.1.1 (A:) Plastocyanin {Fern (Adiantum capillus-veneris) [TaxId: 13818]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: Fern (Adiantum capillus-veneris) [TaxId: 13818]

Probab=98.94  E-value=1.1e-09  Score=71.54  Aligned_cols=89  Identities=24%  Similarity=0.340  Sum_probs=55.0

Q ss_pred             EEEecCC-CCCCccccCCCCCCeeeeCCEEEEEeCCC-CCeEEEECcCCCCCCCC---------CCCCcccccCCcEEEe
Q 048131           29 TFKVGDD-GGWVFGVQNWPEGKTFKCGDILEFNYDPQ-RHNVIIVDQEGHDSCKP---------ASDAKKFQTGKDQIVL   97 (124)
Q Consensus        29 ~~~VG~~-~gW~~~~~~Wa~~~~f~vGD~L~F~y~~~-~h~V~~V~~~~y~~C~~---------~~~~~~~~~G~~~v~l   97 (124)
                      +..||.+ .+-.+.|+    ..++++||+|.|.++.+ .|++.......-+....         .+...........+++
T Consensus         2 ~V~vg~~~g~~~F~P~----~l~v~~GdtV~f~n~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f   77 (102)
T d1kdja_           2 KVEVGDEVGNFKFYPD----SITVSAGEAVEFTLVGETGHNIVFDIPAGAPGTVASELKAASMDENDLLSEDEPSFKAKV   77 (102)
T ss_dssp             EEEESCTTCCCCEESS----EEEECTTCCEEEEECSSSCBCCEECCCTTCCHHHHHHHHHTSCCTTCCBBTTBCEEEECC
T ss_pred             EEEEeecCCceEEeCC----EEEECCCCEEEEEECCCCceeEEEecCCCCCcccccccccCcccccccccCCccEEEEee
Confidence            3456654 44454443    47899999999999865 47666543222111110         0000111112235666


Q ss_pred             C-CcceEEEeCCCCCccCCCcEEEEEeC
Q 048131           98 N-HGKNFFICGVPTHCSDHGMKLEINVE  124 (124)
Q Consensus        98 ~-~G~~yfic~~~~hC~~~GmKl~I~V~  124 (124)
                      + ||+|+|+|..  ||+ .||+-.|+||
T Consensus        78 ~~~G~y~Y~C~~--H~~-~GM~G~I~Ve  102 (102)
T d1kdja_          78 STPGTYTFYCTP--HKS-ANMKGTLTVK  102 (102)
T ss_dssp             CSCEEEEEECST--TGG-GTCEEEEEEC
T ss_pred             CCCceEEEEecC--Ccc-cCCeEEEEEC
Confidence            6 8999999984  999 9999999997

>d2cj3a1 b.6.1.1 (A:1-105) Plastocyanin {Anabaena variabilis [TaxId: 1172]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: Anabaena variabilis [TaxId: 1172]

Probab=98.88  E-value=3e-09  Score=69.72  Aligned_cols=89  Identities=26%  Similarity=0.350  Sum_probs=53.1

Q ss_pred             EEEecCCCC-CCccccCCCCCCeeeeCCEEEEEeCCCCCeEEEECcCCCCCCCCCC-C-----CcccccC-CcEEEe---
Q 048131           29 TFKVGDDGG-WVFGVQNWPEGKTFKCGDILEFNYDPQRHNVIIVDQEGHDSCKPAS-D-----AKKFQTG-KDQIVL---   97 (124)
Q Consensus        29 ~~~VG~~~g-W~~~~~~Wa~~~~f~vGD~L~F~y~~~~h~V~~V~~~~y~~C~~~~-~-----~~~~~~G-~~~v~l---   97 (124)
                      +..||.++| -.+.|+    ..++++||+|.|.+..+.|....+............ +     ......+ ...+++   
T Consensus         4 tV~v~~~~g~~~F~P~----~i~v~~GdtV~f~n~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~   79 (105)
T d2cj3a1           4 TVKLGSDKGLLVFEPA----KLTIKPGDTVEFLNNKVPPHNVVFDAALNPAKSADLAKSLSHKQLLMSPGQSTSTTFPAD   79 (105)
T ss_dssp             EEEESCTTCCSSEESS----EEEECTTCEEEEEECSSCCEEEEECSSSSTTCCHHHHHHHCEEEEECSTTCEEEEECCTT
T ss_pred             EEEEEeCCCceEEeCC----EEEECCCCEEEEEECCCCceeeEeccCCCCccccccCCcccccccccCCCcceEEEEEec
Confidence            445665443 555553    478999999999998665544444222211111100 0     0011111 224443   


Q ss_pred             C-CcceEEEeCCCCCccCCCcEEEEEeC
Q 048131           98 N-HGKNFFICGVPTHCSDHGMKLEINVE  124 (124)
Q Consensus        98 ~-~G~~yfic~~~~hC~~~GmKl~I~V~  124 (124)
                      + ||+|+|+|..  ||+ .||+..|+|+
T Consensus        80 ~~~G~y~y~C~~--H~~-~GM~G~I~V~  104 (105)
T d2cj3a1          80 APAGEYTFYCEP--HRG-AGMVGKITVA  104 (105)
T ss_dssp             CCSEEEEEECTT--TGG-GTCEEEEEEC
T ss_pred             cCCceEEEEeCC--CcC-CCcEEEEEEe
Confidence            3 7999999984  999 9999999996

>d2jxma1 b.6.1.1 (A:1-97) Plastocyanin {Photosynthetic prokaryote (Prochlorothrix hollandica) [TaxId: 1223]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: Photosynthetic prokaryote (Prochlorothrix hollandica) [TaxId: 1223]

Probab=98.86  E-value=2.9e-09  Score=69.11  Aligned_cols=88  Identities=26%  Similarity=0.376  Sum_probs=54.2

Q ss_pred             EEEEecCCCC-CCccccCCCCCCeeeeCCEEEEEeCCC-CCeEEEEC-cCCCC--CCCCCCCCcccccC-CcEEEeC-Cc
Q 048131           28 TTFKVGDDGG-WVFGVQNWPEGKTFKCGDILEFNYDPQ-RHNVIIVD-QEGHD--SCKPASDAKKFQTG-KDQIVLN-HG  100 (124)
Q Consensus        28 ~~~~VG~~~g-W~~~~~~Wa~~~~f~vGD~L~F~y~~~-~h~V~~V~-~~~y~--~C~~~~~~~~~~~G-~~~v~l~-~G  100 (124)
                      .+..+|.+.+ -.+.|    +..++++||++.|.++.+ .|.+.... ...-+  .....+  .....+ ...++++ ||
T Consensus         3 ~~v~~g~~~~~~~F~P----~~i~V~~GdtV~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~tf~~~G   76 (97)
T d2jxma1           3 VQIKMGTDKYAPLYEP----KALSISAGDTVEFVMNKVGPHNVIFDKVPAGESAPALSNTK--LAIAPGSFYSVTLGTPG   76 (97)
T ss_dssp             EEEEEEETTTEEEEES----SEEEECTTCEEEEEECSSCCCCBEEEECCTTSCHHHHCBCC--CCCSCSCCEEEECCSCS
T ss_pred             EEEEEccCCCceEEcC----CEEEECCCCEEEEEECCCcceeEEEecCCCccccccccccc--cccCcceEEEEecCCCe
Confidence            4555665433 33333    357999999999999754 45444332 11111  111111  111112 2367788 99


Q ss_pred             ceEEEeCCCCCccCCCcEEEEEeC
Q 048131          101 KNFFICGVPTHCSDHGMKLEINVE  124 (124)
Q Consensus       101 ~~yfic~~~~hC~~~GmKl~I~V~  124 (124)
                      .|||.|+.  |+. .||+..|+||
T Consensus        77 ~y~Y~C~~--H~~-~GM~G~I~Ve   97 (97)
T d2jxma1          77 TYSFYCTP--HRG-AGMVGTITVE   97 (97)
T ss_dssp             EEEEECSS--TTT-TTCEEEEEEC
T ss_pred             EEEEEEcc--CCC-CCCEEEEEEC
Confidence            99999984  999 9999999997

>d1plca_ b.6.1.1 (A:) Plastocyanin {Poplar (Populus nigra), variant italica [TaxId: 3691]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: Poplar (Populus nigra), variant italica [TaxId: 3691]

Probab=98.79  E-value=6.5e-09  Score=68.24  Aligned_cols=89  Identities=20%  Similarity=0.370  Sum_probs=56.6

Q ss_pred             EEEecCC-CCCCccccCCCCCCeeeeCCEEEEEeCCC-CCeEEEECcCCCCC-C----CCCCCCcccccCCc-EEEeC-C
Q 048131           29 TFKVGDD-GGWVFGVQNWPEGKTFKCGDILEFNYDPQ-RHNVIIVDQEGHDS-C----KPASDAKKFQTGKD-QIVLN-H   99 (124)
Q Consensus        29 ~~~VG~~-~gW~~~~~~Wa~~~~f~vGD~L~F~y~~~-~h~V~~V~~~~y~~-C----~~~~~~~~~~~G~~-~v~l~-~   99 (124)
                      +.++|.+ .+-.+.|+    ..++++||+|.|.++.+ .|+|...+...-.. .    ...........|.+ .++++ |
T Consensus         2 ~V~~g~d~g~~~F~P~----~iti~~GdtV~f~n~~~~~Hnv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~tF~~~   77 (99)
T d1plca_           2 DVLLGADDGSLAFVPS----EFSISPGEKIVFKNNAGFPHNIVFDEDSIPSGVDASKISMSEEDLLNAKGETFEVALSNK   77 (99)
T ss_dssp             EEEESCTTCCSCEESS----EEEECTTCEEEEEECSSCCBCCEECTTSSCTTCCHHHHCCCTTCCBCSTTCEEEEECCSC
T ss_pred             EEEEEeCCCceEEeCC----EEEECCCCEEEEEECCCCCccEEEccCcCCCccccccCcccccccccCCCceEEEecCCC
Confidence            4567754 45565554    47999999999998765 49997643211000 0    00111111223333 66777 9


Q ss_pred             cceEEEeCCCCCccCCCcEEEEEeC
Q 048131          100 GKNFFICGVPTHCSDHGMKLEINVE  124 (124)
Q Consensus       100 G~~yfic~~~~hC~~~GmKl~I~V~  124 (124)
                      |.|+|+|. | |+. .||+-.|+|-
T Consensus        78 G~y~Y~C~-p-H~~-~GM~G~I~V~   99 (99)
T d1plca_          78 GEYSFYCS-P-HQG-AGMVGKVTVN   99 (99)
T ss_dssp             EEEEEECG-G-GTT-TTCEEEEEEC
T ss_pred             ceEEEEeC-C-CcC-CCcEEEEEEC
Confidence            99999996 4 999 9999999983

>d2q5ba1 b.6.1.1 (A:1-105) Plastocyanin {Cyanobacterium (Phormidium laminosum) [TaxId: 32059]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: Cyanobacterium (Phormidium laminosum) [TaxId: 32059]

Probab=98.78  E-value=3.6e-09  Score=69.30  Aligned_cols=89  Identities=28%  Similarity=0.447  Sum_probs=54.6

Q ss_pred             EEEecCCCC-CCccccCCCCCCeeeeCCEEEEEeCCC-CCeEEEECcCCCCCCCCCCC-----CcccccCCc-EEEe---
Q 048131           29 TFKVGDDGG-WVFGVQNWPEGKTFKCGDILEFNYDPQ-RHNVIIVDQEGHDSCKPASD-----AKKFQTGKD-QIVL---   97 (124)
Q Consensus        29 ~~~VG~~~g-W~~~~~~Wa~~~~f~vGD~L~F~y~~~-~h~V~~V~~~~y~~C~~~~~-----~~~~~~G~~-~v~l---   97 (124)
                      +..||.+.| -.+.|+    ..++++||+|.|.+... .|++.......-.......+     ......|.. .+.+   
T Consensus         4 tV~vg~~~g~~~F~P~----~l~v~~GdtV~f~n~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~f~~~   79 (105)
T d2q5ba1           4 TVKMGADSGLLQFEPA----NVTVHPGDTVKWVNNKLPPHNILFDDKQVPGASKELADKLSHSQLMFSPGESYEITFSSD   79 (105)
T ss_dssp             EEEESCTTSCSSEESS----EEEECTTEEEEEEECSSCCEEEEECGGGSGGGCHHHHHHHCEEEEECSTTCEEEEEECTT
T ss_pred             EEEEecCCCceEEeCC----EEEECCCCEEEEEECCCCCceeEeecCcccccccccCCccccccccccCCceEEEEEEec
Confidence            455676544 555553    47999999999988754 46666543322111211110     112222322 3333   


Q ss_pred             C-CcceEEEeCCCCCccCCCcEEEEEeC
Q 048131           98 N-HGKNFFICGVPTHCSDHGMKLEINVE  124 (124)
Q Consensus        98 ~-~G~~yfic~~~~hC~~~GmKl~I~V~  124 (124)
                      + +|+|||+|..  ||+ .||+..|+||
T Consensus        80 ~~~G~y~y~C~~--H~~-~GM~G~I~Ve  104 (105)
T d2q5ba1          80 FPAGTYTYYCAP--HRG-AGMVGKITVE  104 (105)
T ss_dssp             SCSEEEEEECST--TGG-GTCEEEEEEC
T ss_pred             cCCceEEEEeCC--CCC-CCCEEEEEEc
Confidence            2 6999999984  999 9999999997

>d1adwa_ b.6.1.1 (A:) Pseudoazurin {Thiosphaera pantotropha [TaxId: 82367]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Pseudoazurin
species: Thiosphaera pantotropha [TaxId: 82367]

Probab=98.69  E-value=1.9e-08  Score=68.41  Aligned_cols=82  Identities=21%  Similarity=0.199  Sum_probs=55.2

Q ss_pred             cCCCCCCccccCCCCCCeeeeCCEEEEEeCCCCCeEEEECcCCCCCCCCCCCCcccccCCcEEEeC-CcceEEEeCCCCC
Q 048131           33 GDDGGWVFGVQNWPEGKTFKCGDILEFNYDPQRHNVIIVDQEGHDSCKPASDAKKFQTGKDQIVLN-HGKNFFICGVPTH  111 (124)
Q Consensus        33 G~~~gW~~~~~~Wa~~~~f~vGD~L~F~y~~~~h~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~l~-~G~~yfic~~~~h  111 (124)
                      |++.+-.+.|    +..++++||+|.|.+....|++....... . .... ...........++++ +|.|+|+|..  |
T Consensus        11 g~~g~m~F~P----~~itI~~GdtV~f~n~~~~~~~~~~~~~~-~-~~~~-~~~~~~~~~~~~tF~~~G~Y~Y~C~p--H   81 (123)
T d1adwa_          11 GESGAMVFEP----AFVRAEPGDVINFVPTDKSHNVEAIKEIL-P-EGVE-SFKSKINESYTLTVTEPGLYGVKCTP--H   81 (123)
T ss_dssp             CSSCEEEEES----SEEEECTTEEEEEEESSSSCCCEECTTSC-C-TTCC-CCBCCTTCCEEEEECSCEEEEEECGG--G
T ss_pred             CCCCcEEEeC----CEEEECCCCEEEEEeCCCCcceecccCcc-c-cccc-cccccCCcceEEeccCCCeEEEEEcc--C
Confidence            5555555544    34789999999999998778777653211 0 1111 111111122478888 9999999995  9


Q ss_pred             ccCCCcEEEEEeC
Q 048131          112 CSDHGMKLEINVE  124 (124)
Q Consensus       112 C~~~GmKl~I~V~  124 (124)
                      |. .||+..|+|.
T Consensus        82 ~~-~GM~G~I~Vg   93 (123)
T d1adwa_          82 FG-MGMVGLVQVG   93 (123)
T ss_dssp             GG-GTCEEEEEES
T ss_pred             CC-CCCEEEEEEC
Confidence            99 9999999983

>d1paza_ b.6.1.1 (A:) Pseudoazurin {Alcaligenes faecalis, strain s-6 [TaxId: 511]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Pseudoazurin
species: Alcaligenes faecalis, strain s-6 [TaxId: 511]

Probab=98.69  E-value=3e-08  Score=67.66  Aligned_cols=80  Identities=23%  Similarity=0.236  Sum_probs=56.0

Q ss_pred             cCCCCCCccccCCCCCCeeeeCCEEEEEeCCCCCeEEEECcCCCCCCCCCCCCccc-c-cCCcEEEeC-CcceEEEeCCC
Q 048131           33 GDDGGWVFGVQNWPEGKTFKCGDILEFNYDPQRHNVIIVDQEGHDSCKPASDAKKF-Q-TGKDQIVLN-HGKNFFICGVP  109 (124)
Q Consensus        33 G~~~gW~~~~~~Wa~~~~f~vGD~L~F~y~~~~h~V~~V~~~~y~~C~~~~~~~~~-~-~G~~~v~l~-~G~~yfic~~~  109 (124)
                      |++.+..+.|.    ..++.+||++.|.+..+.|+|........     .+..... . +....++++ ||.|+|.|+. 
T Consensus        11 g~~g~m~F~P~----~itI~~GDTV~f~n~~~~Hnv~~~~~~~~-----~~~~~~~~~~~~~~s~tF~~~G~y~Y~Ctp-   80 (120)
T d1paza_          11 GAEGAMVFEPA----YIKANPGDTVTFIPVDKGHNVESIKDMIP-----EGAEKFKSKINENYVLTVTQPGAYLVKCTP-   80 (120)
T ss_dssp             ETTEEEEEESS----EEEECTTCEEEEEESSSSCCCEECTTCSC-----TTCCCCBCCTTCCEEEECCSCEEEEEECTT-
T ss_pred             CCCCcEEEeCC----EEEECCCCEEEEeeCCCcceEeeccccCc-----ccccccccccCceEEEEecCCCeEEEEEee-
Confidence            44444555543    47999999999999988899876543222     1111111 1 123478888 9999999984 


Q ss_pred             CCccCCCcEEEEEeC
Q 048131          110 THCSDHGMKLEINVE  124 (124)
Q Consensus       110 ~hC~~~GmKl~I~V~  124 (124)
                       |+. .||+-.|+|.
T Consensus        81 -H~~-~GM~G~I~Vg   93 (120)
T d1paza_          81 -HYA-MGMIALIAVG   93 (120)
T ss_dssp             -TGG-GTCEEEEEES
T ss_pred             -CCC-CCCEEEEEEC
Confidence             999 9999999983

>d1pcsa_ b.6.1.1 (A:) Plastocyanin {Cyanobacterium (Synechocystis sp.), pcc 6803 [TaxId: 1143]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: Cyanobacterium (Synechocystis sp.), pcc 6803 [TaxId: 1143]

Probab=98.60  E-value=2.6e-08  Score=64.97  Aligned_cols=87  Identities=25%  Similarity=0.415  Sum_probs=55.4

Q ss_pred             EEEecCCC-CCCccccCCCCCCeeeeCCEEEEEeCC-CCCeEEEECcCCCCCCCCCC----CCcccccCC-cEEEeC-Cc
Q 048131           29 TFKVGDDG-GWVFGVQNWPEGKTFKCGDILEFNYDP-QRHNVIIVDQEGHDSCKPAS----DAKKFQTGK-DQIVLN-HG  100 (124)
Q Consensus        29 ~~~VG~~~-gW~~~~~~Wa~~~~f~vGD~L~F~y~~-~~h~V~~V~~~~y~~C~~~~----~~~~~~~G~-~~v~l~-~G  100 (124)
                      +..||.++ +-.+.|.    ..++++||+|.|.+.. ..|++.......  .++...    .......|. ..++++ ||
T Consensus         4 tv~~g~~~~~~~F~P~----~i~v~~GdtV~~~n~~~~~H~~~~~~~~~--~~~~~~~~~~~~~~~~~g~t~~~tf~~~G   77 (98)
T d1pcsa_           4 TVKMGSDSGALVFEPS----TVTIKAGEEVKWVNNKLSPHNIVFDADGV--PADTAAKLSHKGLLFAAGESFTSTFTEPG   77 (98)
T ss_dssp             EEEESCTTSCSSEESS----EEEECTTCEEEEEECSSCCEEEEECCSSS--CHHHHHHHCEEEEECSTTCEEEEECCSCE
T ss_pred             EEEeeeCCCceEEeCC----EEEECCCCEEEEeECCCCccceEEecccc--CCCccccccccccccCCCcEEEEeccCCc
Confidence            44566543 3333332    4789999999998864 469987752211  011100    001122343 367788 99


Q ss_pred             ceEEEeCCCCCccCCCcEEEEEeC
Q 048131          101 KNFFICGVPTHCSDHGMKLEINVE  124 (124)
Q Consensus       101 ~~yfic~~~~hC~~~GmKl~I~V~  124 (124)
                      .|+|+|. + |+. .||+..|+||
T Consensus        78 ~y~Y~C~-~-H~~-~gM~G~I~Ve   98 (98)
T d1pcsa_          78 TYTYYCE-P-HRG-AGMVGKVVVE   98 (98)
T ss_dssp             EEEEECG-G-GTT-TTCEEEEEEC
T ss_pred             eEEEEec-c-CCC-CCCEEEEEEC
Confidence            9999997 4 999 9999999997

>d1bqka_ b.6.1.1 (A:) Pseudoazurin {Achromobacter cycloclastes [TaxId: 223]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Pseudoazurin
species: Achromobacter cycloclastes [TaxId: 223]

Probab=98.58  E-value=8.1e-08  Score=65.76  Aligned_cols=71  Identities=18%  Similarity=0.136  Sum_probs=49.7

Q ss_pred             CCeeeeCCEEEEEeCCCCCeEEEECcCCCCCCCCCCCCcccccCCcEEEeC-CcceEEEeCCCCCccCCCcEEEEEeC
Q 048131           48 GKTFKCGDILEFNYDPQRHNVIIVDQEGHDSCKPASDAKKFQTGKDQIVLN-HGKNFFICGVPTHCSDHGMKLEINVE  124 (124)
Q Consensus        48 ~~~f~vGD~L~F~y~~~~h~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~l~-~G~~yfic~~~~hC~~~GmKl~I~V~  124 (124)
                      ..++.+||++.|.+....|++..+....-  ..... ...-.....+++++ ||.|+|+|..  ||. .||+-.|+|.
T Consensus        22 ~itI~~GdTV~w~n~~~~~~~~~~~~~~p--~~~~~-~~~~~~~~~s~Tf~~~G~Y~Y~C~p--H~~-~GM~G~IvVg   93 (124)
T d1bqka_          22 SLKVAPGDTVTFIPTDKGHNVETIKGMIP--DGAEA-FKSKINENYKVTFTAPGVYGVKCTP--HYG-MGMVGVVQVG   93 (124)
T ss_dssp             EEEECTTCEEEEECSSSSCCCEECTTCSC--TTCCC-CBCCTTCCEEEECCSCEEEEEECTT--TGG-GTCEEEEEES
T ss_pred             EEEECCCCeEEEEECCCCcccccccccCC--Ccccc-ccccCCccEEEecCCCceEEEEecc--CcC-CCCEEEEEEC
Confidence            47899999999999977788766532211  11111 11111223478888 9999999984  999 9999999983

>d1bxua_ b.6.1.1 (A:) Plastocyanin {Cyanobacterium (Synechocystis sp.), pcc 7942 [TaxId: 1143]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plastocyanin
species: Cyanobacterium (Synechocystis sp.), pcc 7942 [TaxId: 1143]

Probab=98.58  E-value=7e-08  Score=62.41  Aligned_cols=83  Identities=24%  Similarity=0.407  Sum_probs=53.8

Q ss_pred             EEecCC-CCCCccccCCCCCCeeeeCCEEEEEeCCCC-CeEEEECcCCCCCCCCCCCCcccccCCc-EEEeC-CcceEEE
Q 048131           30 FKVGDD-GGWVFGVQNWPEGKTFKCGDILEFNYDPQR-HNVIIVDQEGHDSCKPASDAKKFQTGKD-QIVLN-HGKNFFI  105 (124)
Q Consensus        30 ~~VG~~-~gW~~~~~~Wa~~~~f~vGD~L~F~y~~~~-h~V~~V~~~~y~~C~~~~~~~~~~~G~~-~v~l~-~G~~yfi  105 (124)
                      ..+|.+ ..-.+.|    +..++.+||+|.|.+..+. |++......+..   ..  ......|.+ .++++ ||.|+|.
T Consensus         5 v~~~~d~g~~~F~P----~~i~I~~GdtV~f~n~d~~~h~~~~~~~~~~~---~~--~~~~~~g~~~~~tF~~~G~y~Y~   75 (91)
T d1bxua_           5 IKMGADNGMLAFEP----STIEIQAGDTVQWVNNKLAPHNVVVEGQPELS---HK--DLAFSPGETFEATFSEPGTYTYY   75 (91)
T ss_dssp             EEESCTTSCSSEES----SEEEECTTCEEEEEECSSCCEEEEETTCGGGC---EE--EEECSTTCEEEEECCSCEEEEEE
T ss_pred             EEEeeCCCceEEEC----CEEEECCCCEEEEEECCcCCceEEeccccccc---cc--ccccCCCCCEEEEeccCceEEEE
Confidence            344543 3344444    3578999999999997544 555443222110   00  112233433 78888 9999999


Q ss_pred             eCCCCCccCCCcEEEEEeC
Q 048131          106 CGVPTHCSDHGMKLEINVE  124 (124)
Q Consensus       106 c~~~~hC~~~GmKl~I~V~  124 (124)
                      |..  |.. .||+..|+||
T Consensus        76 C~~--H~~-~gM~G~I~Ve   91 (91)
T d1bxua_          76 CEP--HRG-AGMVGKIVVQ   91 (91)
T ss_dssp             CTT--TGG-GTCEEEEEEC
T ss_pred             eCC--CCC-CCCEEEEEEC
Confidence            985  999 9999999997

>d1pmya_ b.6.1.1 (A:) Pseudoazurin {Methylobacterium extorquens, strain am1 [TaxId: 408]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Pseudoazurin
species: Methylobacterium extorquens, strain am1 [TaxId: 408]

Probab=98.56  E-value=1.2e-07  Score=64.46  Aligned_cols=72  Identities=22%  Similarity=0.234  Sum_probs=49.0

Q ss_pred             CCCeeeeCCEEEEEeCCCCCeEEEECcCCCCCCCCCCCCcccccCCcEEEeC-CcceEEEeCCCCCccCCCcEEEEEeC
Q 048131           47 EGKTFKCGDILEFNYDPQRHNVIIVDQEGHDSCKPASDAKKFQTGKDQIVLN-HGKNFFICGVPTHCSDHGMKLEINVE  124 (124)
Q Consensus        47 ~~~~f~vGD~L~F~y~~~~h~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~l~-~G~~yfic~~~~hC~~~GmKl~I~V~  124 (124)
                      +..++.+||++.|.+..+.|.+..+.....+.  .. ....-......++++ ||.|+|+|..  ||. .||+..|.|.
T Consensus        21 ~~ltV~~GDTV~f~n~d~~~h~~~~~~~~~~~--~~-~~~~~~~~~~~~tF~~~G~Y~Y~C~p--H~~-~GM~G~I~Vg   93 (123)
T d1pmya_          21 ALVRLKPGDSIKFLPTDKGHNVETIKGMAPDG--AD-YVKTTVGQEAVVKFDKEGVYGFKCAP--HYM-MGMVALVVVG   93 (123)
T ss_dssp             SEEEECTTCEEEEECSSSSCCCEECTTSSCTT--CC-CCBCCTTSCEEEECCSCEEEEEECST--TTT-TTCEEEEEES
T ss_pred             CEEEECCCCEEEEeeCCCCcccccccccCccc--cc-ccccccccccccccCCCceEEEEecc--CCC-CCCEEEEEEC
Confidence            35789999999999987677666553221110  01 111111123478888 9999999985  999 9999999983

>d1qhqa_ b.6.1.1 (A:) Auracyanin {Chloroflexus aurantiacus [TaxId: 1108]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Auracyanin
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=98.50  E-value=9e-08  Score=65.56  Aligned_cols=92  Identities=18%  Similarity=0.355  Sum_probs=55.9

Q ss_pred             EEEEecC-CCCCCccccCCCCCCeeeeCCEEEEEeCCC-----CCeEEEECcCC-----------------CCC-CCCCC
Q 048131           28 TTFKVGD-DGGWVFGVQNWPEGKTFKCGDILEFNYDPQ-----RHNVIIVDQEG-----------------HDS-CKPAS   83 (124)
Q Consensus        28 ~~~~VG~-~~gW~~~~~~Wa~~~~f~vGD~L~F~y~~~-----~h~V~~V~~~~-----------------y~~-C~~~~   83 (124)
                      .+..|+- +++-.+.++    ..+++.||++.|.+.+.     .|+++.+...+                 +.. =+...
T Consensus        16 ~tvev~~~~~~m~F~p~----~i~v~aG~~V~~~~~N~~~~~~~Hn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~   91 (139)
T d1qhqa_          16 QTVEVRAAPDALAFAQT----SLSLPANTVVRLDFVNQNNLGVQHNWVLVNGGDDVAAAVNTAAQNNADALFVPPPDTPN   91 (139)
T ss_dssp             EEEEEEBCSSSSSBSCS----EEEEETTCEEEEEEEECCSSCCCBCCEEESSSHHHHHHHHHHHHTCGGGTTCCCTTCTT
T ss_pred             eEEEEEecCCcceEcCC----eEEECCCCEEEEEEeCCcccceeEEEeecccchhhHHHHHHhhhccchhccccCCCccc
Confidence            4555543 345555443    46899999999888532     49998873211                 000 00000


Q ss_pred             CC---cccccCCc---EEEeC-CcceEEEeCCCCCccCCCcEEEEEeC
Q 048131           84 DA---KKFQTGKD---QIVLN-HGKNFFICGVPTHCSDHGMKLEINVE  124 (124)
Q Consensus        84 ~~---~~~~~G~~---~v~l~-~G~~yfic~~~~hC~~~GmKl~I~V~  124 (124)
                      .+   .....|.+   .|+.+ ||.|.|+|++++|++ .||+..|.|.
T Consensus        92 v~~~t~~~~pg~s~~i~f~~~~~G~y~f~Ct~pgH~~-~GM~G~i~V~  138 (139)
T d1qhqa_          92 ALAWTAMLNAGESGSVTFRTPAPGTYLYICTFPGHYL-AGMKGTLTVT  138 (139)
T ss_dssp             EEEECCCBCTTEEEEEEEECCSSEEEEEECCSTTTTT-TTCEEEEEEE
T ss_pred             ccccccccCCcceEEEEEecCCCeEEEEEcCCcCccc-ccCeEEEEEc
Confidence            00   01112222   45556 899999999999999 9999999883

>d2ov0a1 b.6.1.1 (A:1-105) Amicyanin {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Amicyanin
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.11  E-value=3.7e-06  Score=55.13  Aligned_cols=69  Identities=19%  Similarity=0.206  Sum_probs=46.6

Q ss_pred             CCeeeeCCEEEEEeCC-CCCeEEEECcCCCCCCCCCCCCcccccC-CcEEEeC-CcceEEEeCCCCCccCCCcEEEEEeC
Q 048131           48 GKTFKCGDILEFNYDP-QRHNVIIVDQEGHDSCKPASDAKKFQTG-KDQIVLN-HGKNFFICGVPTHCSDHGMKLEINVE  124 (124)
Q Consensus        48 ~~~f~vGD~L~F~y~~-~~h~V~~V~~~~y~~C~~~~~~~~~~~G-~~~v~l~-~G~~yfic~~~~hC~~~GmKl~I~V~  124 (124)
                      ..++++||+|.|.++. ..|+|...+...-.. ...+  .....| ...++++ ||.|+|+|+.  |   .||+..|.||
T Consensus        34 ~i~V~~GdtV~f~N~d~~~H~v~~~~~~~~~~-~~~~--~~~~~g~~~~~tf~~pG~y~y~C~~--H---~~M~G~I~Ve  105 (105)
T d2ov0a1          34 ELHVKVGDTVTWINREAMPHNVHFVAGVLGEA-ALKG--PMMKKEQAYSLTFTEAGTYDYHCTP--H---PFMRGKVVVE  105 (105)
T ss_dssp             EEEECTTCEEEEEECSSSCBCCEECTTTSSSS-CEEC--CCBCTTEEEEEEECSCEEEEEECSS--C---TTCEEEEEEC
T ss_pred             EEEECCCCEEEEEECCCCceeEEEecccCCcc-cccc--cccCCCceEEEEecCCeEEEEEecC--C---CCCEEEEEEC
Confidence            4689999999998874 469987653211000 0111  112233 3378888 9999999997  5   5899999997

>d1cuoa_ b.6.1.1 (A:) Azurin {Methylomonas sp. j [TaxId: 32038]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Azurin
species: Methylomonas sp. j [TaxId: 32038]

Probab=97.92  E-value=6.4e-06  Score=56.24  Aligned_cols=24  Identities=21%  Similarity=0.418  Sum_probs=22.5

Q ss_pred             CcceEEEeCCCCCccCCCcEEEEEeC
Q 048131           99 HGKNFFICGVPTHCSDHGMKLEINVE  124 (124)
Q Consensus        99 ~G~~yfic~~~~hC~~~GmKl~I~V~  124 (124)
                      ||.|.|+|++||| . +||+-.|+|+
T Consensus       105 ~G~Y~f~Ct~PGH-~-~gM~G~l~V~  128 (129)
T d1cuoa_         105 DEAYTYFCSYPGH-F-SMMRGTLKLE  128 (129)
T ss_dssp             TSCEEEECCSTTC-T-TTSEEEEEEE
T ss_pred             CceEEEEeCCCCc-c-cCcEEEEEEe
Confidence            7999999999999 7 9999999985

>d1id2a_ b.6.1.1 (A:) Amicyanin {Paracoccus versutus (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Amicyanin
species: Paracoccus versutus (Thiobacillus versutus) [TaxId: 34007]

Probab=97.86  E-value=2.6e-05  Score=50.79  Aligned_cols=68  Identities=24%  Similarity=0.297  Sum_probs=44.9

Q ss_pred             CCeeeeCCEEEEEeCC-CCCeEEEECc-CCCCCCCCCCCCcccccC-CcEEEeC-CcceEEEeCCCCCccCCCcEEEEEe
Q 048131           48 GKTFKCGDILEFNYDP-QRHNVIIVDQ-EGHDSCKPASDAKKFQTG-KDQIVLN-HGKNFFICGVPTHCSDHGMKLEINV  123 (124)
Q Consensus        48 ~~~f~vGD~L~F~y~~-~~h~V~~V~~-~~y~~C~~~~~~~~~~~G-~~~v~l~-~G~~yfic~~~~hC~~~GmKl~I~V  123 (124)
                      ..++++||+|.|.++. ..|+|...+. ...+  ...+  .....| ..+++++ +|.|+|.|..  |   .||+..|.|
T Consensus        35 ~i~V~~GdtV~f~N~d~~~H~v~~~~~~~~~~--~f~s--~~~~~~~~~~~tf~~~G~y~y~C~~--H---~~M~G~I~V  105 (106)
T d1id2a_          35 EVTIKAGETVYWVNGEVMPHNVAFKKGIVGED--AFRG--EMMTKDQAYAITFNEAGSYDYFCTP--H---PFMRGKVIV  105 (106)
T ss_dssp             EEEECTTCEEEEEECSSSCBCCEECTTTSSSS--CEEC--CCBCTTEEEEEEECSCEEEEEECSS--C---TTCEEEEEE
T ss_pred             EEEECCCCEEEEEECCCCceeEEeccccCCcc--cccc--cccCCCceEEEecCCCeEEEEEccC--C---CCCEEEEEE
Confidence            4689999999998864 3699875421 1110  0011  111222 2367778 9999999997  5   599999999


Q ss_pred             C
Q 048131          124 E  124 (124)
Q Consensus       124 ~  124 (124)
                      |
T Consensus       106 e  106 (106)
T d1id2a_         106 E  106 (106)
T ss_dssp             C
T ss_pred             C
Confidence            7

>d1e30a_ b.6.1.1 (A:) Rusticyanin {Thiobacillus ferrooxidans [TaxId: 920]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Rusticyanin
species: Thiobacillus ferrooxidans [TaxId: 920]

Probab=97.71  E-value=0.00011  Score=50.13  Aligned_cols=75  Identities=16%  Similarity=0.272  Sum_probs=48.5

Q ss_pred             CeeeeCCEEEEEeCC----CCCeEEEECc-CCCCCCCCCCCC-------cccccCC---cEEEe-C-CcceEEEeCCCCC
Q 048131           49 KTFKCGDILEFNYDP----QRHNVIIVDQ-EGHDSCKPASDA-------KKFQTGK---DQIVL-N-HGKNFFICGVPTH  111 (124)
Q Consensus        49 ~~f~vGD~L~F~y~~----~~h~V~~V~~-~~y~~C~~~~~~-------~~~~~G~---~~v~l-~-~G~~yfic~~~~h  111 (124)
                      .+++.||+|.|.+.+    ..|+...... ..+..=+...+.       .....|.   ..|+. + ||+|||.|..++|
T Consensus        62 i~v~~Gd~V~i~v~N~~~~~~H~~~ih~~g~~~~~~~~~~~~~~~~~~~~~v~pg~~~~~~f~~~~~pGty~YhCh~~~H  141 (153)
T d1e30a_          62 LEIPAGATVDVTFINTNKGFGHSFDITKKGPPYAVMPVIDPIVAGTGFSPVPKDGKFGYTNFTWHPTAGTYYYVCQIPGH  141 (153)
T ss_dssp             EEECTTCEEEEEEEECCTTCCCCCEEESCCSSCCSSCCCCSEEEEBCCCCCCBTTEEEEEEEEECCCSEEEEEECCSTTT
T ss_pred             EEEeCCCEEEEEEEeCCCCCcccEEEEcCCCCccccccccccCCCccceeeecCCCEEEEEEEeCCCCeEEEEeCCchhH
Confidence            578999999999843    2588877632 222211111110       1112222   24554 4 7999999999999


Q ss_pred             ccCCCcEEEEEeC
Q 048131          112 CSDHGMKLEINVE  124 (124)
Q Consensus       112 C~~~GmKl~I~V~  124 (124)
                      =. .||.-.|.||
T Consensus       142 ~~-~GM~G~iiVe  153 (153)
T d1e30a_         142 AA-TGQFGKIVVK  153 (153)
T ss_dssp             TT-TTCEEEEEEC
T ss_pred             HH-CCCEEEEEEC
Confidence            99 9999999997

>d2ccwa1 b.6.1.1 (A:1-129) Azurin {Alcaligenes xylosoxidans, NCIMB (11015), different isoforms [TaxId: 85698]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Azurin
species: Alcaligenes xylosoxidans, NCIMB (11015), different isoforms [TaxId: 85698]

Probab=97.53  E-value=8.9e-05  Score=50.26  Aligned_cols=24  Identities=21%  Similarity=0.355  Sum_probs=22.2

Q ss_pred             CcceEEEeCCCCCccCCCcEEEEEeC
Q 048131           99 HGKNFFICGVPTHCSDHGMKLEINVE  124 (124)
Q Consensus        99 ~G~~yfic~~~~hC~~~GmKl~I~V~  124 (124)
                      ||.|-|+|++||| . .||+-.|.|.
T Consensus       105 ~G~Y~f~Ct~PGH-~-~gM~G~l~V~  128 (129)
T d2ccwa1         105 GENYAYFCSFPGH-W-AMMKGTLKLG  128 (129)
T ss_dssp             TCCEEEECCSTTG-G-GTSEEEEEEC
T ss_pred             CccEEEEeCCCCh-h-hCcEEEEEEc
Confidence            6999999999999 8 9999999883

>d1ibya_ b.6.1.4 (A:) Red copper protein nitrosocyanin {Nitrosomonas europaea [TaxId: 915]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Nitrosocyanin
domain: Red copper protein nitrosocyanin
species: Nitrosomonas europaea [TaxId: 915]

Probab=97.22  E-value=0.00011  Score=48.36  Aligned_cols=66  Identities=15%  Similarity=0.177  Sum_probs=44.2

Q ss_pred             CCeeeeCCEEEEEeCC---CCCeEEEECcCCCCCCCCCCCCcccccCC---cEEEeC-CcceEEEeCCCCCccCCCcEEE
Q 048131           48 GKTFKCGDILEFNYDP---QRHNVIIVDQEGHDSCKPASDAKKFQTGK---DQIVLN-HGKNFFICGVPTHCSDHGMKLE  120 (124)
Q Consensus        48 ~~~f~vGD~L~F~y~~---~~h~V~~V~~~~y~~C~~~~~~~~~~~G~---~~v~l~-~G~~yfic~~~~hC~~~GmKl~  120 (124)
                      ..+++.||++.|.+.+   -.|++..-   ++..   .   .....|.   -.|+++ ||.|+|.|..  ||...||+..
T Consensus        39 ~i~v~~Gd~V~~~~~n~d~~~H~~~i~---~~~~---~---~~~~pG~t~~~~f~~~~~G~y~y~C~~--~~~~~~M~G~  107 (112)
T d1ibya_          39 TLVVKKGDAVKVVVENKSPISEGFSID---AFGV---Q---EVIKAGETKTISFTADKAGAFTIWCQL--HPKNIHLPGT  107 (112)
T ss_dssp             EEEEETTCEEEEEEEECSSSCEEEEEG---GGTE---E---EEECTTCEEEEEEECCSCEEEEEBCSS--SCTTTBCCEE
T ss_pred             EEEEeCCCEEEEEEEeCCCCceeeeec---cccc---c---cccCCcceEEEEEEeccceEEEEECcc--cChhhcCeEE
Confidence            4789999999888752   25887642   2210   0   1112232   356677 8999999997  7874679999


Q ss_pred             EEeC
Q 048131          121 INVE  124 (124)
Q Consensus       121 I~V~  124 (124)
                      |.|.
T Consensus       108 i~V~  111 (112)
T d1ibya_         108 LNVV  111 (112)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9873

>d1jzga_ b.6.1.1 (A:) Azurin {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Azurin
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.17  E-value=0.00031  Score=47.52  Aligned_cols=24  Identities=29%  Similarity=0.512  Sum_probs=22.2

Q ss_pred             CcceEEEeCCCCCccCCCcEEEEEeC
Q 048131           99 HGKNFFICGVPTHCSDHGMKLEINVE  124 (124)
Q Consensus        99 ~G~~yfic~~~~hC~~~GmKl~I~V~  124 (124)
                      ||.|-|+|++||| . +||+-.|+|+
T Consensus       105 ~G~Y~f~Ct~PGH-~-~gM~G~l~Ve  128 (128)
T d1jzga_         105 GEQYMFFCTFPGH-S-ALMKGTLTLK  128 (128)
T ss_dssp             TCCEEEECCSTTG-G-GTSEEEEEEC
T ss_pred             CceEEEEECCCCc-c-cccEEEEEEC
Confidence            6999999999999 5 7999999996

>d1ikop_ b.6.1.5 (P:) Ephrin-b2 ectodomain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Ephrin ectodomain
domain: Ephrin-b2 ectodomain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.80  E-value=0.00038  Score=48.22  Aligned_cols=74  Identities=20%  Similarity=0.318  Sum_probs=46.4

Q ss_pred             eeeeCCEEEEEeC---CC------CCeEEEECcCCCCCCCCCCC-Cccc------c------------cCCcEEEeCCcc
Q 048131           50 TFKCGDILEFNYD---PQ------RHNVIIVDQEGHDSCKPASD-AKKF------Q------------TGKDQIVLNHGK  101 (124)
Q Consensus        50 ~f~vGD~L~F~y~---~~------~h~V~~V~~~~y~~C~~~~~-~~~~------~------------~G~~~v~l~~G~  101 (124)
                      .+++||.|-+.=+   ++      ...+++|++++|++|+..+. ...+      .            .-.-.+.+.||.
T Consensus        25 ~V~i~D~ldIiCP~y~~~~~~~~E~~~lY~V~~e~y~~C~~~~~~~~~~~C~~P~~~~kft~kFQ~fsP~~lG~EF~pG~  104 (141)
T d1ikop_          25 YPQIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKENTPLLNCARPDQDVKFTIKFQEFSPNLWGLEFQKNK  104 (141)
T ss_dssp             CCCTTCEEEEECCCCCSSSCSCCCBEEEEEECHHHHHHTBCCTTCCCSEEECCTTSCCEEEEECCSSCSSTTCCCCCTTE
T ss_pred             EeccCCEEEEECCCCCCCCCCcceEEEEEEECHHHhCcccCCCCCcEEEEeCCCCCCeEEEEEEeecCCCCCCeeecCCC
Confidence            3567899988543   21      36789999999999997532 2111      1            111133344674


Q ss_pred             -eEEEeCCCC-----------CccCCCcEEEEEe
Q 048131          102 -NFFICGVPT-----------HCSDHGMKLEINV  123 (124)
Q Consensus       102 -~yfic~~~~-----------hC~~~GmKl~I~V  123 (124)
                       ||||++=.+           -|....|||.|.|
T Consensus       105 ~YY~IstS~g~~~gl~~~~gg~C~t~~MKl~i~V  138 (141)
T d1ikop_         105 DYYIISTSNGSLEGLDNQEGGVCQTRAMKILMKV  138 (141)
T ss_dssp             EEEEECCCCBSGGGTTCCBSHHHHHSCCEEEEEE
T ss_pred             eEEEEEcCCCCCCccccccCCccCCCccEEEEEe
Confidence             667766322           2985689999987

>d1shxa1 b.6.1.5 (A:32-170) Ephrin-a5 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Ephrin ectodomain
domain: Ephrin-a5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.73  E-value=0.00084  Score=46.26  Aligned_cols=73  Identities=22%  Similarity=0.317  Sum_probs=45.5

Q ss_pred             CeeeeCCEEEEEeC---CC-------CCeEEEECcCCCCCCCCCCCC-c------ccc-cCCcE--------------EE
Q 048131           49 KTFKCGDILEFNYD---PQ-------RHNVIIVDQEGHDSCKPASDA-K------KFQ-TGKDQ--------------IV   96 (124)
Q Consensus        49 ~~f~vGD~L~F~y~---~~-------~h~V~~V~~~~y~~C~~~~~~-~------~~~-~G~~~--------------v~   96 (124)
                      ..+++||.|-+.=+   .+       ...+++|++++|++|+..+.. .      ++. .|...              ++
T Consensus        23 i~V~i~D~ldIiCP~y~~~~~~~~~E~y~lY~Vs~e~y~~C~~~~~~~~~~~C~~P~~~~~~~kft~kFQ~fsP~~~G~E  102 (138)
T d1shxa1          23 IDVCINDYLDVFCPHYEDSVPEDKTERYVLYMVNFDGYSACDHTSKGFKRWECNRPHSPNGPLKFSEKFQLFTPFSLGFE  102 (138)
T ss_dssp             EEECTTCEEEEECCCCCTTCCSTTCCCEEEEEECHHHHHTTCSSSSEEEEEEECCTTCTTSSCEEEEECCSCCSSTTCCC
T ss_pred             EEeccCCEEEEECCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCCEEEEcCCCCCCCCCceEEEEEEEcCCCCCCee
Confidence            35778999988543   11       367899999999999976431 1      111 22222              22


Q ss_pred             eCCc-ceEEEeC---CCCCccCCCcEEEEEe
Q 048131           97 LNHG-KNFFICG---VPTHCSDHGMKLEINV  123 (124)
Q Consensus        97 l~~G-~~yfic~---~~~hC~~~GmKl~I~V  123 (124)
                      +.|| .||||++   ..++|.  -|||.|.|
T Consensus       103 F~pG~~YY~ISTs~g~~~~~~--~mrLkv~V  131 (138)
T d1shxa1         103 FRPGREYFYISSAIPDNGRRS--CLKLKVFV  131 (138)
T ss_dssp             CCTTEEEEEEEEESSCCSCSC--CCEEEEEE
T ss_pred             ecCCCEEEEEEeeCCCCCCcc--ceEeEEEE
Confidence            3366 5778865   334554  48988887

>d1fwxa1 b.6.1.4 (A:452-581) Nitrous oxide reductase, C-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Nitrosocyanin
domain: Nitrous oxide reductase, C-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.71  E-value=0.002  Score=43.42  Aligned_cols=68  Identities=19%  Similarity=0.182  Sum_probs=42.7

Q ss_pred             CCeeeeCCEEEEEeCCC------CCeEEEECcCCCCCCCCCCCCcccccCCc---EEEeC-CcceEEEeCCCCCccCCCc
Q 048131           48 GKTFKCGDILEFNYDPQ------RHNVIIVDQEGHDSCKPASDAKKFQTGKD---QIVLN-HGKNFFICGVPTHCSDHGM  117 (124)
Q Consensus        48 ~~~f~vGD~L~F~y~~~------~h~V~~V~~~~y~~C~~~~~~~~~~~G~~---~v~l~-~G~~yfic~~~~hC~~~Gm  117 (124)
                      ..+++.||++.|+..+.      .|+...   .++.   .   ......|.+   .|+.+ ||.|+|.|+.+.|=.-.||
T Consensus        53 ~i~V~~Gd~V~~~ltN~d~~~~v~H~~~i---~~~~---~---~~~~~PG~~~~~~F~a~~~G~y~~~C~~~cg~~H~~M  123 (132)
T d1fwxa1          53 SFTVKEGDEVTVIVTNLDEIDDLTHGFTM---GNYG---V---AMEIGPQMTSSVTFVAANPGVYWYYCQWFCHALHMEM  123 (132)
T ss_dssp             EEEEETTCEEEEEEEECCCSTTCCEEEEE---TTTT---E---EEEECTTCEEEEEEECCSCEEEEEECCSCCSTTCTTC
T ss_pred             EEEEcCCCEEEEEEEcCCCCccceEeech---hhhc---c---ccccCCCEEEEEEEeCCCCeEEEEECccccCcchhcC
Confidence            35778899999998642      355544   2221   0   011222333   56667 8999999997544321589


Q ss_pred             EEEEEeC
Q 048131          118 KLEINVE  124 (124)
Q Consensus       118 Kl~I~V~  124 (124)
                      +..|.||
T Consensus       124 ~G~iiVe  130 (132)
T d1fwxa1         124 RGRMLVE  130 (132)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            9999986

>d1nwpa_ b.6.1.1 (A:) Azurin {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Azurin
species: Pseudomonas putida [TaxId: 303]

Probab=96.20  E-value=0.0023  Score=42.98  Aligned_cols=24  Identities=29%  Similarity=0.432  Sum_probs=21.9

Q ss_pred             CcceEEEeCCCCCccCCCcEEEEEeC
Q 048131           99 HGKNFFICGVPTHCSDHGMKLEINVE  124 (124)
Q Consensus        99 ~G~~yfic~~~~hC~~~GmKl~I~V~  124 (124)
                      ||.|-|+|++||| . +|||-.+.|+
T Consensus       105 ~G~Y~f~Ct~PGH-~-~~M~G~l~V~  128 (128)
T d1nwpa_         105 GEKYGFFCSFPGH-I-SMMKGTVTLK  128 (128)
T ss_dssp             TSCEEEECCSTTC-G-GGSEEEEEEC
T ss_pred             CceEEEEECCCCc-c-cCceEEEEEC
Confidence            5999999999999 5 7999999986

>d2cuaa_ b.6.1.2 (A:) Cytochrome c oxidase {Thermus thermophilus, ba3 type [TaxId: 274]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Periplasmic domain of cytochrome c oxidase subunit II
domain: Cytochrome c oxidase
species: Thermus thermophilus, ba3 type [TaxId: 274]

Probab=96.09  E-value=0.0092  Score=39.58  Aligned_cols=65  Identities=18%  Similarity=0.237  Sum_probs=43.0

Q ss_pred             CCeeeeCCEEEEEeCCC--CCeEEEECcCCCCCCCCCCCCcccccCCc---EEEeC-CcceEEEeCC---CCCccCCCcE
Q 048131           48 GKTFKCGDILEFNYDPQ--RHNVIIVDQEGHDSCKPASDAKKFQTGKD---QIVLN-HGKNFFICGV---PTHCSDHGMK  118 (124)
Q Consensus        48 ~~~f~vGD~L~F~y~~~--~h~V~~V~~~~y~~C~~~~~~~~~~~G~~---~v~l~-~G~~yfic~~---~~hC~~~GmK  118 (124)
                      ..++..||.+.|+.++.  .|+...-   +|..      ......|..   .|+.+ ||.|+|+|+.   .+|   .+|+
T Consensus        48 ~l~vp~G~~V~~~lts~DV~H~f~ip---~~~v------~~d~~PG~~~~~~~~~~~~G~y~~~C~~~CG~~H---~~M~  115 (122)
T d2cuaa_          48 PIEVPQGAEIVFKITSPDVIHGFHVE---GTNI------NVEVLPGEVSTVRYTFKRPGEYRIICNQYCGLGH---QNMF  115 (122)
T ss_dssp             SEEEETTSEEEEEEEBSSSCEEEEET---TSSC------EEEECBTBCEEEEEECCSCEEEEEECCSCCSTTS---TTCE
T ss_pred             EEEEeCCCEEEEEEEcCCccceeEec---CCCe------eEEEecCceEEEEEEeccceeEEEEehhccCCCc---ccCe
Confidence            47899999999998753  5777642   2211      011112332   45666 8999999997   345   4799


Q ss_pred             EEEEeC
Q 048131          119 LEINVE  124 (124)
Q Consensus       119 l~I~V~  124 (124)
                      ..|.|+
T Consensus       116 g~i~V~  121 (122)
T d2cuaa_         116 GTIVVK  121 (122)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            999885

>d1qnia1 b.6.1.4 (A:451-581) Nitrous oxide reductase, C-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Nitrosocyanin
domain: Nitrous oxide reductase, C-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=95.54  E-value=0.013  Score=39.20  Aligned_cols=68  Identities=18%  Similarity=0.202  Sum_probs=42.5

Q ss_pred             CCeeeeCCEEEEEeCCC------CCeEEEECcCCCCCCCCCCCCcccccCC---cEEEeC-CcceEEEeCCCCCccCCCc
Q 048131           48 GKTFKCGDILEFNYDPQ------RHNVIIVDQEGHDSCKPASDAKKFQTGK---DQIVLN-HGKNFFICGVPTHCSDHGM  117 (124)
Q Consensus        48 ~~~f~vGD~L~F~y~~~------~h~V~~V~~~~y~~C~~~~~~~~~~~G~---~~v~l~-~G~~yfic~~~~hC~~~Gm  117 (124)
                      ..+++.||++.|+.++.      .|+....   +|.      .......|.   -.|+.+ ||.|+|+|++..|=.-.+|
T Consensus        52 ~i~V~~Gd~V~~~vtn~~~s~Dv~H~f~ip---~~~------v~~~~~PG~t~~~~f~~~~~G~y~~~C~~~cg~~H~~M  122 (131)
T d1qnia1          52 DFKVKEGDEVTVYITNLDMVEDVTHGFCMV---NHG------VSMEISPQQTASVTFTAGKPGVYWYYCNWFCHALHMEM  122 (131)
T ss_dssp             EEEEETTCEEEEEEEECCCSTTCCEEEEET---TTT------EEEEECTTCEEEEEEECCSSEEEEEECCSCCSTTGGGC
T ss_pred             eEEecCCCEEEEEEEccCCCCcceEEEEEe---ccC------cccccCCCceEEEEEEcCCCEEEEEECccccCcchhcC
Confidence            46889999999987531      3666652   221      001122233   256667 8999999997532211479


Q ss_pred             EEEEEeC
Q 048131          118 KLEINVE  124 (124)
Q Consensus       118 Kl~I~V~  124 (124)
                      +..|.||
T Consensus       123 ~g~i~Ve  129 (131)
T d1qnia1         123 VGRMLVE  129 (131)
T ss_dssp             EEEEEEE
T ss_pred             eeEEEEE
Confidence            9999885

>d1kbva1 b.6.1.3 (A:13-163) Nitrite reductase, NIR {Neisseria gonorrhoeae, AniA [TaxId: 485]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Nitrite reductase, NIR
species: Neisseria gonorrhoeae, AniA [TaxId: 485]

Probab=94.69  E-value=0.022  Score=38.58  Aligned_cols=84  Identities=25%  Similarity=0.308  Sum_probs=46.8

Q ss_pred             CCCccccCCCCCCeeeeCCEEEEEeCCC-----CCeEEEECcCCCCCCCCCCCCcccccCCc---EEEeC-CcceEEEeC
Q 048131           37 GWVFGVQNWPEGKTFKCGDILEFNYDPQ-----RHNVIIVDQEGHDSCKPASDAKKFQTGKD---QIVLN-HGKNFFICG  107 (124)
Q Consensus        37 gW~~~~~~Wa~~~~f~vGD~L~F~y~~~-----~h~V~~V~~~~y~~C~~~~~~~~~~~G~~---~v~l~-~G~~yfic~  107 (124)
                      -|.++-+-.....+++.||+|.+++.+.     .|.+-.-....-+  ... .......|.+   .|+.+ +|++||-|.
T Consensus        48 ~~~~Ng~~pGP~i~v~~Gd~v~v~~~N~~~~~~~H~~~~h~~~~~~--~~~-~~~~i~PG~t~~y~f~a~~~Gt~~YH~H  124 (151)
T d1kbva1          48 YWTFDGDVPGRMIRVREGDTVEVEFSNNPSSTVPHNVDFHAATGQG--GGA-AATFTAPGRTSTFSFKALQPGLYIYHCA  124 (151)
T ss_dssp             EEEETTBSSCCBEEEETTCEEEEEEEECTTCSSCBCCEETTCCSGG--GGT-TTTCBCTTEEEEEEEECCSCEEEEEECC
T ss_pred             EEEECCccCCCeEEEECCCEEEEEEEcCCCCceeeeccccccccCC--CCc-ceeeeCCCCEEEEEEeCCCCeEEEEECC
Confidence            3655422223447899999999998641     2444331100000  000 0011222332   56667 899999999


Q ss_pred             CCC---CccCCCcEEEEEeC
Q 048131          108 VPT---HCSDHGMKLEINVE  124 (124)
Q Consensus       108 ~~~---hC~~~GmKl~I~V~  124 (124)
                      ...   |=. .||--.|.|+
T Consensus       125 ~~~~~~h~~-~Gm~G~liV~  143 (151)
T d1kbva1         125 VAPVGMHIA-NGMYGLILVE  143 (151)
T ss_dssp             CSSHHHHHH-TTCEEEEEEE
T ss_pred             CCChHHHHh-CCCEEEEEEE
Confidence            654   666 8998877764

>d1aoza1 b.6.1.3 (A:1-129) Ascorbate oxidase {Zucchini (Cucurbita pepo var. medullosa) [TaxId: 3663]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Ascorbate oxidase
species: Zucchini (Cucurbita pepo var. medullosa) [TaxId: 3663]

Probab=94.27  E-value=0.02  Score=37.76  Aligned_cols=76  Identities=14%  Similarity=0.135  Sum_probs=44.1

Q ss_pred             CCeeeeCCEEEEEeCCC--CCeE-EEECcCCCCCCCCC-CC----CcccccCCc---EEEeC-CcceEEEeCCCCCccCC
Q 048131           48 GKTFKCGDILEFNYDPQ--RHNV-IIVDQEGHDSCKPA-SD----AKKFQTGKD---QIVLN-HGKNFFICGVPTHCSDH  115 (124)
Q Consensus        48 ~~~f~vGD~L~F~y~~~--~h~V-~~V~~~~y~~C~~~-~~----~~~~~~G~~---~v~l~-~G~~yfic~~~~hC~~~  115 (124)
                      ...++.||+|++++.+.  .+.. +-.-.-.+..-... ..    ......|.+   .|+.+ ||++||-|-...|=. .
T Consensus        35 ~i~v~~GD~v~i~l~N~l~~~~~~iH~Hg~~~~~~~~~~~~~~~~~~~I~PG~s~~y~f~a~~~Gt~~YH~H~~~h~~-~  113 (129)
T d1aoza1          35 TIRANAGDSVVVELTNKLHTEGVVIHWHGILQRGTPWADGTASISQCAINPGETFFYNFTVDNPGTFFYHGHLGMQRS-A  113 (129)
T ss_dssp             CEEEETTCEEEEEEEECCSSCCBCEEEETCCCTTCGGGSCCBTTTBCCBCTTCEEEEEEECCSCEEEEEEECSTTTGG-G
T ss_pred             eEEEECCcEEEEEEEeCCCCCCeeeeeccceeeccCccccccccccceECCCCEEEEEEECCCCCceEEecCCHHHHh-C
Confidence            36789999999887643  1211 11100001111100 00    011223433   55666 899999999999988 9


Q ss_pred             CcEEEEEeC
Q 048131          116 GMKLEINVE  124 (124)
Q Consensus       116 GmKl~I~V~  124 (124)
                      ||--.|.|+
T Consensus       114 Gm~G~~iV~  122 (129)
T d1aoza1         114 GLYGSLIVD  122 (129)
T ss_dssp             TCEEEEEEE
T ss_pred             CCEEEEEEc
Confidence            999888874

>d1oe2a1 b.6.1.3 (A:1-159) Nitrite reductase, NIR {Alcaligenes xylosoxidans [TaxId: 85698]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Nitrite reductase, NIR
species: Alcaligenes xylosoxidans [TaxId: 85698]

Probab=90.95  E-value=0.13  Score=35.07  Aligned_cols=73  Identities=18%  Similarity=0.259  Sum_probs=41.6

Q ss_pred             CCeeeeCCEEEEEeCCC-----CCeEEEECcCCCCCCCCCCCCcccccCCc---EEEeC-CcceEEEeCCCC----CccC
Q 048131           48 GKTFKCGDILEFNYDPQ-----RHNVIIVDQEGHDSCKPASDAKKFQTGKD---QIVLN-HGKNFFICGVPT----HCSD  114 (124)
Q Consensus        48 ~~~f~vGD~L~F~y~~~-----~h~V~~V~~~~y~~C~~~~~~~~~~~G~~---~v~l~-~G~~yfic~~~~----hC~~  114 (124)
                      ..+++.||+|.+++.+.     .|++..=...+..   ..........|.+   .|+++ +|++||-|...+    |=. 
T Consensus        66 tI~v~~Gd~v~v~~~N~~~~~h~h~ih~hg~~~~~---~g~~~~~I~PG~t~ty~f~a~~~Gt~~yH~H~~~~~~~q~~-  141 (159)
T d1oe2a1          66 TLVVHEGDYVQLTLVNPATNAMPHNVEFHGATGAL---GGAKLTNVNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVV-  141 (159)
T ss_dssp             CEEEETTCEEEEEEEECTTCCSCBCCEETTSCSGG---GGGGGCCBCTTEEEEEEEECCSCEEEEEECCCTTCHHHHHH-
T ss_pred             eEEEECCcEEEEEEECCCccccccceeeccccCCC---CCcccccCCCCCeEEEEEEcCCCceEEEEeCCCCCchhHHh-
Confidence            36788999999999753     2444321100000   0001111233433   56667 899999997532    556 


Q ss_pred             CCcEEEEEeC
Q 048131          115 HGMKLEINVE  124 (124)
Q Consensus       115 ~GmKl~I~V~  124 (124)
                      .||--.+.|+
T Consensus       142 ~Gl~G~liV~  151 (159)
T d1oe2a1         142 SGMSGTLMVL  151 (159)
T ss_dssp             TTCEEEEEEE
T ss_pred             CCCEEEEEEE
Confidence            8998777764

>d1gyca1 b.6.1.3 (A:1-130) Laccase {Trametes versicolor, laccase 2 [TaxId: 5325]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Laccase
species: Trametes versicolor, laccase 2 [TaxId: 5325]

Probab=90.32  E-value=0.43  Score=31.23  Aligned_cols=75  Identities=15%  Similarity=0.115  Sum_probs=44.5

Q ss_pred             CCeeeeCCEEEEEeCCC--------CCeEEE----ECc-CCCCCCCCCCCCcccccCCc---EEEeC--CcceEEEeCCC
Q 048131           48 GKTFKCGDILEFNYDPQ--------RHNVII----VDQ-EGHDSCKPASDAKKFQTGKD---QIVLN--HGKNFFICGVP  109 (124)
Q Consensus        48 ~~~f~vGD~L~F~y~~~--------~h~V~~----V~~-~~y~~C~~~~~~~~~~~G~~---~v~l~--~G~~yfic~~~  109 (124)
                      ..+++.||+|..++.+.        .+++--    ++. ...+.....+. .....|.+   .|++.  +|++||-|-+.
T Consensus        35 tI~~~~GD~v~v~~~N~~~~~~~~~~~~iH~HG~~~~~~~~~d~~~~~s~-~~i~PG~s~~Y~~~~~~~~Gt~wYH~H~~  113 (130)
T d1gyca1          35 LITGKKGDRFQLNVVDTLTNHTMLKSTSIHWHGFFQAGTNWADGPAFVNQ-CPIASGHSFLYDFHVPDQAGTFWYHSHLS  113 (130)
T ss_dssp             CEEEETTCEEEEEEEECCCCGGGCSCBCEEEETCCCTTCGGGSCCBTTTB-CCBCTTEEEEEEEECSSCCEEEEEEECST
T ss_pred             eEEEECCeEEEEEEEecCCCcccCCceeEEeccccccccCCCCCcccccc-CCCCCCCeEEEEEECCCCCceeEEecCCH
Confidence            46889999999998643        223321    111 11111111000 01222332   56553  79999999999


Q ss_pred             CCccCCCcEEEEEeC
Q 048131          110 THCSDHGMKLEINVE  124 (124)
Q Consensus       110 ~hC~~~GmKl~I~V~  124 (124)
                      .|=. .||--.+.|+
T Consensus       114 ~~~~-~Gl~G~liV~  127 (130)
T d1gyca1         114 TQYC-DGLRGPFVVY  127 (130)
T ss_dssp             TGGG-GTCEEEEEEE
T ss_pred             HHHh-CCCEEEEEEe
Confidence            9988 9999988875

>d2bw4a1 b.6.1.3 (A:8-164) Nitrite reductase, NIR {Alcaligenes xylosoxidans [TaxId: 85698]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Nitrite reductase, NIR
species: Alcaligenes xylosoxidans [TaxId: 85698]

Probab=88.35  E-value=0.11  Score=35.35  Aligned_cols=72  Identities=18%  Similarity=0.224  Sum_probs=41.5

Q ss_pred             CeeeeCCEEEEEeCCC-----CCeEEEECcCCCCCCCCCCCCcccccCCc---EEEeC-CcceEEEeCCC----CCccCC
Q 048131           49 KTFKCGDILEFNYDPQ-----RHNVIIVDQEGHDSCKPASDAKKFQTGKD---QIVLN-HGKNFFICGVP----THCSDH  115 (124)
Q Consensus        49 ~~f~vGD~L~F~y~~~-----~h~V~~V~~~~y~~C~~~~~~~~~~~G~~---~v~l~-~G~~yfic~~~----~hC~~~  115 (124)
                      .+++.||+|.+++.+.     .|++..=...+-. -  .........|.+   .|+.+ ||++||-|-..    .|=. .
T Consensus        66 I~v~~GD~V~i~l~N~~~~~~~Hg~~~h~~~~~~-~--~~~~~~i~PGet~ty~f~a~~pGt~~YH~H~~~~~~~h~~-~  141 (157)
T d2bw4a1          66 MVVHENDYVELRLINPDTNTLLHNIDFHAATGAL-G--GGALTQVNPGEETTLRFKATKPGVFVYHCAPEGMVPWHVT-S  141 (157)
T ss_dssp             EEEETTCEEEEEEEECTTCCSCBCCEETTSCSGG-G--GGGGCCBCTTEEEEEEEECCSCEEEEEECCCTTCHHHHHH-T
T ss_pred             EEEECCcEEEEEEEeCCCCcceEeeeecccCCCc-C--CcceeeECcCCEEeEEEECCCCccceEEECCCCchHHHHh-C
Confidence            6789999999998742     2444331100000 0  000111223433   56666 89999999743    3556 8


Q ss_pred             CcEEEEEeC
Q 048131          116 GMKLEINVE  124 (124)
Q Consensus       116 GmKl~I~V~  124 (124)
                      ||--.+.|+
T Consensus       142 Gl~G~~iV~  150 (157)
T d2bw4a1         142 GMNGAIMVL  150 (157)
T ss_dssp             TCEEEEEEE
T ss_pred             CCEEEEEEe
Confidence            998888774

>d1mzya1 b.6.1.3 (A:41-193) Nitrite reductase, NIR {Rhodobacter sphaeroides [TaxId: 1063]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Nitrite reductase, NIR
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=88.07  E-value=0.29  Score=32.89  Aligned_cols=70  Identities=19%  Similarity=0.204  Sum_probs=41.6

Q ss_pred             CeeeeCCEEEEEeCCC-----CCeEEE-E-CcCCCCCCCCCCCCcccccCCc---EEEeC-CcceEEEeCCCC-----Cc
Q 048131           49 KTFKCGDILEFNYDPQ-----RHNVII-V-DQEGHDSCKPASDAKKFQTGKD---QIVLN-HGKNFFICGVPT-----HC  112 (124)
Q Consensus        49 ~~f~vGD~L~F~y~~~-----~h~V~~-V-~~~~y~~C~~~~~~~~~~~G~~---~v~l~-~G~~yfic~~~~-----hC  112 (124)
                      .+++.||+|++++.+.     .|+.-. . +..+-.     ........|.+   .|+.+ +|++||-|....     |=
T Consensus        64 i~v~~Gd~v~i~~~N~~~~~~~H~~~~h~~~~~~~~-----~~~~~i~PG~t~ty~f~a~~~Gt~~YH~H~~~~~~~~h~  138 (153)
T d1mzya1          64 MIVHEGDYVELTLINPPENTMPHNIDFHAATGALGG-----GGLTLINPGEKVVLRFKATRAGAFVYHCAPGGPMIPWHV  138 (153)
T ss_dssp             EEEETTCEEEEEEEECTTCCSCBCCEETTSCSGGGG-----GGGCCBCTTEEEEEEEECCSCEEEEEECCCSTTHHHHHH
T ss_pred             EEEeCCCEEEEEEEcCCCCceEccCccccCCcCCCC-----CccccccCCCEEEEEEEcCCCceEEEEeCCcccccHhHH
Confidence            5789999999998642     244433 1 111000     00111223433   56666 899999998654     45


Q ss_pred             cCCCcEEEEEeC
Q 048131          113 SDHGMKLEINVE  124 (124)
Q Consensus       113 ~~~GmKl~I~V~  124 (124)
                      . .||--.+.||
T Consensus       139 ~-~Gm~G~~iV~  149 (153)
T d1mzya1         139 V-SGMAGCIMVL  149 (153)
T ss_dssp             H-TTCEEEEEEE
T ss_pred             h-CCCEEEEEEe
Confidence            6 7998888774

>d2q9oa1 b.6.1.3 (A:1-162) Laccase {Melanocarpus albomyces [TaxId: 204285]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Laccase
species: Melanocarpus albomyces [TaxId: 204285]

Probab=84.22  E-value=0.42  Score=32.27  Aligned_cols=30  Identities=10%  Similarity=0.241  Sum_probs=25.5

Q ss_pred             EEEeC-CcceEEEeCCCCCccCCCcEEEEEeC
Q 048131           94 QIVLN-HGKNFFICGVPTHCSDHGMKLEINVE  124 (124)
Q Consensus        94 ~v~l~-~G~~yfic~~~~hC~~~GmKl~I~V~  124 (124)
                      .+..+ +|++||-|-...|=. .||--.|.|+
T Consensus       126 ~f~~~~~Gt~wYH~H~~~q~~-~Gl~G~~iV~  156 (162)
T d2q9oa1         126 RWRARQYGTSWYHSHFSAQYG-NGVVGTIQIN  156 (162)
T ss_dssp             EEECCSCEEEEEEECSTTGGG-GTCEEEEEEE
T ss_pred             eecCCCCEEEEeecCCHHHHh-CCCEEEEEEC
Confidence            45556 899999999999988 9999998885

>d1hfua1 b.6.1.3 (A:1-131) Laccase {Inky cap fungus (Coprinus cinereus) [TaxId: 5346]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Laccase
species: Inky cap fungus (Coprinus cinereus) [TaxId: 5346]

Probab=83.54  E-value=0.65  Score=30.40  Aligned_cols=25  Identities=12%  Similarity=0.243  Sum_probs=22.6

Q ss_pred             CcceEEEeCCCCCccCCCcEEEEEeC
Q 048131           99 HGKNFFICGVPTHCSDHGMKLEINVE  124 (124)
Q Consensus        99 ~G~~yfic~~~~hC~~~GmKl~I~V~  124 (124)
                      +|++||-|-...|=. .||--.|.|+
T Consensus       103 ~Gt~wYH~H~~~q~~-~Gl~G~liV~  127 (131)
T d1hfua1         103 AGTFWYHSHFGTQYC-DGLRGPMVIY  127 (131)
T ss_dssp             CEEEEEEECSTTGGG-GTCEEEEEEE
T ss_pred             cceEEEecCCHHHHh-CCCEEEEEEc
Confidence            699999999999988 9999998875