Citrus Sinensis ID: 048133

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170--
Protein Sequence
MGHKEIDMDEGWDIIQKWITKLRRISEGLPEPPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYNKCKQDLEEYMSSTVFPSLSEKHDEHLLRELVKRFANHKVMVKWLALCFNYLERYYIRQRALPTISEIGLTCFRDLVFDALKHKAKDVVITLIDREREGEEIDRALLKN
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEcHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEcHHHHcc
Coil and Loop (DISEMBL)
mghkeidmdeGWDIIQKWITKLRRiseglpeppfnvddyVMLYSSVYstciqgphhgysaqLYNKCKQDLEEymsstvfpslsekhdEHLLRELVKRFANHKVMVKWLALCFNYLERYYIRQRALPTISEIGLTCFRDLVFDALKHKAKDVVITLIDREREGEEIDRALLKN
Flexible Loop (DISEMBL)
mghkeidmdegWDIIQKWITKLRRISEGLPEPPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYNKCKQDLEEYMSSTVFPSLSEKHDEHLLRELVKRFANHKVMVKWLALCFNYLERYYIRQRALPTISEIGLTCFRDLVFDALKHKAKDVVItlidreregeeidrallkn
Low Complexity Region (SEG)
MGHKEIDMDEGWDIIQKWITKLRRISEGLPEPPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYNKCKQDLEEYMSSTVFPSLSEKHDEHLLRELVKRFANHKVMVKWLALCFNYLERYYIRQRALPTISEIGLTCFRDLVFDALKHKAKDVVITLidreregeeidrALLKN
Disordered region (IsUnstruct)
*********EGWDIIQKWITKLRRISEGLPEPPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYNKCKQDLEEYMSSTVFPSLSEKHDEHLLRELVKRFANHKVMVKWLALCFNYLERYYIRQRALPTISEIGLTCFRDLVFDALKHKAKDVVITLID***************
Disordered Region (DISOPRED)
***KEID*DEGWDIIQKWITKLRRISEGLPEPPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYNKCKQDLEEYMSSTVFPSLSEKHDEHLLRELVKRFANHKVMVKWLALCFNYLERYYIRQRALPTISEIGLTCFRDLVFDALKHKAKDVVITLIDREREGEEIDRALLK*
Disordered Region (DISEMBL)
********DEGWDIIQKWITKLRRISEGLPEPPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYNKCKQDLEEYMSSTVFPSLSEKHDEHLLRELVKRFANHKVMVKWLALCFNYLERYYIRQRALPTISEIGLTCFRDLVFDALKHKAKDVVITLIDREREGEEIDRALLKN
Disordered Region (DISPRO)
**HKEIDMDEGWDIIQKWITKLRRISEGLPEPPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYNKCKQDLEEYMSSTVFPSLSEKHDEHLLRELVKRFANHKVMVKWLALCFNYLERYYIRQRALPTISEIGLTCFRDLVFDALKHKAKDVVITLIDREREGEEIDRALLKN
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGHKEIDMDEGWDIIQKWITKLRRISEGLPEPPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYNKCKQDLEEYMSSTVFPSLSEKHDEHLLRELVKRFANHKVMVKWLALCFNYLERYYIRQRALPTISEIGLTCFRDLVFDALKHKAKDVVITLIDREREGEEIDRALLKN
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	172	2.2.26 [Sep-21-2011]
Q94AH6	738	Cullin-1 OS=Arabidopsis t	yes	no	1.0	0.233	0.587	2e-58
P0CH31	721	Putative cullin-like prot	no	no	0.965	0.230	0.488	4e-46
Q9XIE9	374	Putative cullin-like prot	no	no	0.970	0.446	0.526	2e-44
Q9SRZ0	742	Cullin-2 OS=Arabidopsis t	no	no	1.0	0.231	0.462	1e-42
Q9XIE8	255	Cullin-like protein 3 OS=	no	no	0.953	0.643	0.404	5e-32
Q54NZ5	769	Cullin-3 OS=Dictyostelium	yes	no	0.732	0.163	0.330	8e-12
Q13619	759	Cullin-4A OS=Homo sapiens	yes	no	0.738	0.167	0.296	1e-08
Q9JLV5	768	Cullin-3 OS=Mus musculus	yes	no	0.866	0.194	0.219	2e-08
B5DF89	768	Cullin-3 OS=Rattus norveg	yes	no	0.866	0.194	0.219	2e-08
Q13618	768	Cullin-3 OS=Homo sapiens	no	no	0.866	0.194	0.219	2e-08

>sp|Q94AH6|CUL1_ARATH Cullin-1 OS=Arabidopsis thaliana GN=CUL1 PE=1 SV=1

 Score =  224 bits (572), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 101/172 (58%), Positives = 136/172 (79%)

Query: 1   MGHKEIDMDEGWDIIQKWITKLRRISEGLPEPPFNVDDYVMLYSSVYSTCIQGPHHGYSA 60
           M  K ID+++GWD +Q  ITKL+RI EGL EP F+ + Y+MLY+++Y+ C Q P H YS 
Sbjct: 1   MERKTIDLEQGWDYMQTGITKLKRILEGLNEPAFDSEQYMMLYTTIYNMCTQKPPHDYSQ 60

Query: 61  QLYNKCKQDLEEYMSSTVFPSLSEKHDEHLLRELVKRFANHKVMVKWLALCFNYLERYYI 120
           QLY+K ++  EEY++STV P+L EKHDE +LREL KR++NHKVMV+WL+  F YL+RY+I
Sbjct: 61  QLYDKYREAFEEYINSTVLPALREKHDEFMLRELFKRWSNHKVMVRWLSRFFYYLDRYFI 120

Query: 121 RQRALPTISEIGLTCFRDLVFDALKHKAKDVVITLIDREREGEEIDRALLKN 172
            +R+LP ++E+GLTCFRDLV++ L  K K  VI L+D+EREGE+IDRALLKN
Sbjct: 121 ARRSLPPLNEVGLTCFRDLVYNELHSKVKQAVIALVDKEREGEQIDRALLKN 172

Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Regulator of mitotic processes which plays a role during gametogenesis and embryogenesis. Together with SKP1, RBX1 and a F-box protein, it forms a SCF complex. The functional specificity of this complex depends of the type of F-box protein. SCF(UFO) is implicated in floral organ development. SCF(TIR1) is involved in auxin signaling pathway. SCF(COI1) regulates responses to jasmonates. SCF(EID1) and SCF(AFR) are implicated in phytochrome A light signaling. SCF(ADO1/ZTL), SCF(ADO2/LKP2), SCF(ADO3/FKF1) are related to the circadian clock. SCF(ORE9) seems to be involved in senescence. SCF(EBF1/EBF2) may regulate ethylene signaling.
Arabidopsis thaliana (taxid: 3702)

>sp|P0CH31|CLL1_ARATH Putative cullin-like protein 1 OS=Arabidopsis thaliana GN=At1g43140 PE=3 SV=1

 Score =  184 bits (466), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 82/168 (48%), Positives = 125/168 (74%), Gaps = 2/168 (1%)

Query: 6   IDMDEGWDIIQKWITKLRRISEGLPEPPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYNK 65
           I ++EGW +++  + KL+RI E L EPPF+   Y+ LY+ +Y  C+Q P + YS +LYNK
Sbjct: 15  ILLEEGWSVMKTGVAKLQRILEDLSEPPFDPGQYINLYTIIYDMCLQQPPNDYSQELYNK 74

Query: 66  CKQDLEEYMSSTVFPSLSEKHDEHLLRELVKRFANHKVMVKWLA-LCFNYLERYYIRQRA 124
            +  ++ Y   TV PS+ E+H E++LRELVKR+ANHK++V+WL+  CF YL+R+Y+ +R 
Sbjct: 75  YRGVVDHYNKETVLPSMRERHGEYMLRELVKRWANHKILVRWLSRFCF-YLDRFYVARRG 133

Query: 125 LPTISEIGLTCFRDLVFDALKHKAKDVVITLIDREREGEEIDRALLKN 172
           LPT++++G T F DLV+  ++ +AKDV++ LI +EREGE+IDR L+KN
Sbjct: 134 LPTLNDVGFTSFHDLVYQEIQSEAKDVLLALIHKEREGEQIDRTLVKN 181

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XIE9|CLL2_ARATH Putative cullin-like protein 2 OS=Arabidopsis thaliana GN=At1g59790 PE=3 SV=2

 Score =  178 bits (451), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 90/171 (52%), Positives = 121/171 (70%), Gaps = 4/171 (2%)

Query: 4   KEIDMDEGWDIIQKWITKLRRISEGLPEPPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLY 63
           ++I  +EGW  IQK ITKL RI EG PEP F   +   LY+ +Y  C+Q     YS QLY
Sbjct: 10  RQIKFEEGWSNIQKGITKLIRILEGEPEPTFYFSECFKLYTIIYDMCVQ--RSDYSQQLY 67

Query: 64  NKCKQDLEEYMSSTVFPSLSEKHDEHLLRELVKRFANHKVMVKWLALCFNYLERYYIRQR 123
            K ++ +E+Y   TV PSL EKHDE +LRELVKR+ NHK+MVKWL+  F Y++R+ +R+ 
Sbjct: 68  EKYRKVIEDYTIQTVLPSLREKHDEDMLRELVKRWNNHKIMVKWLSKFFVYIDRHLVRRS 127

Query: 124 A--LPTISEIGLTCFRDLVFDALKHKAKDVVITLIDREREGEEIDRALLKN 172
              +P++ E+GLTCF DLV+  ++  AK+VVI LI +EREGE+IDRAL+KN
Sbjct: 128 KIPIPSLDEVGLTCFLDLVYCEMQSTAKEVVIALIHKEREGEQIDRALVKN 178

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SRZ0|CUL2_ARATH Cullin-2 OS=Arabidopsis thaliana GN=CUL2 PE=1 SV=1

 Score =  172 bits (435), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 80/173 (46%), Positives = 121/173 (69%), Gaps = 1/173 (0%)

Query: 1   MGHKEIDMDEGWDIIQKWITKLRRISEGLP-EPPFNVDDYVMLYSSVYSTCIQGPHHGYS 59
           M  K+  ++ GW +++  + KL++I E +P EPPF+    + LY++V++ C Q P + YS
Sbjct: 1   MAKKDSVLEAGWSVMEAGVAKLQKILEEVPDEPPFDPVQRMQLYTTVHNLCTQKPPNDYS 60

Query: 60  AQLYNKCKQDLEEYMSSTVFPSLSEKHDEHLLRELVKRFANHKVMVKWLALCFNYLERYY 119
            Q+Y++      +Y   TV P++ EKH E++LRELVKR+AN K++V+WL+  F YL+R+Y
Sbjct: 61  QQIYDRYGGVYVDYNKQTVLPAIREKHGEYMLRELVKRWANQKILVRWLSHFFEYLDRFY 120

Query: 120 IRQRALPTISEIGLTCFRDLVFDALKHKAKDVVITLIDREREGEEIDRALLKN 172
            R+ + PT+S +G   FRDLV+  L+ KAKD V+ LI +EREGE+IDRALLKN
Sbjct: 121 TRRGSHPTLSAVGFISFRDLVYQELQSKAKDAVLALIHKEREGEQIDRALLKN 173

Core component of multiple SCF (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complexes. Involved in ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XIE8|CLL3_ARATH Cullin-like protein 3 OS=Arabidopsis thaliana GN=At1g59800 PE=3 SV=2

 Score =  137 bits (344), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 68/168 (40%), Positives = 106/168 (63%), Gaps = 4/168 (2%)

Query: 5   EIDMDEGWDIIQKWITKLRRISEGLPEPPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYN 64
           EI  +  W  IQ+  TKL R+ EG  EP FN +  +M++++ Y  C     +    QLY+
Sbjct: 6   EIKFEVEWSNIQQGFTKLIRMIEGESEPAFNQEIMMMMHTATYRICA----YKNPQQLYD 61

Query: 65  KCKQDLEEYMSSTVFPSLSEKHDEHLLRELVKRFANHKVMVKWLALCFNYLERYYIRQRA 124
           K ++ +E Y   TV PSL EKHDE +LREL KR+  HK++V+  +    YL+  ++ ++ 
Sbjct: 62  KYRELIENYAIQTVLPSLREKHDECMLRELAKRWNAHKLLVRLFSRRLVYLDDSFLSKKG 121

Query: 125 LPTISEIGLTCFRDLVFDALKHKAKDVVITLIDREREGEEIDRALLKN 172
           LP++ E+GL CFRD V+  ++  A + ++ LI +EREGE+IDR L++N
Sbjct: 122 LPSLREVGLNCFRDQVYREMQSMAAEAILALIHKEREGEQIDRELVRN 169

Arabidopsis thaliana (taxid: 3702)

>sp|Q54NZ5|CUL3_DICDI Cullin-3 OS=Dictyostelium discoideum GN=culC PE=3 SV=1

 Score = 69.7 bits (169), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 77/133 (57%), Gaps = 7/133 (5%)

Query: 42  LYSSVYSTCIQGPHHGYSAQLYNKCKQDLEEYMSSTVFPSLSEKHDEHLLRELVKRFANH 101
           LY + Y+  +Q   HG    LYN  K+ +++++ + V  ++SE  DE  L EL   + NH
Sbjct: 53  LYRNGYNMVLQ--KHG--DLLYNNLKKMVDKHLKA-VAKTVSESIDEKFLLELNSSWINH 107

Query: 102 KVMVKWLALCFNYLERYYIRQRALPTISEIGLTCFRDLVF--DALKHKAKDVVITLIDRE 159
           K  +  +     Y++R Y++Q  L ++ ++GL  FRD V     +K +  + +++++ +E
Sbjct: 108 KTSMLMIRDILMYMDRNYVKQNNLSSVFDLGLYLFRDNVAHCSTIKDRLLNTLLSMVQKE 167

Query: 160 REGEEIDRALLKN 172
           REGE IDR L+KN
Sbjct: 168 REGEVIDRILIKN 180

Probable core component of cullin-based SCF-like E3 ubiquitin-protein ligase complexes which mediate the ubiquitination and subsequent proteasomal degradation of target proteins. The E3 ubiquitin-protein ligase activity of the complex is dependent on the neddylation of the cullin subunit.

Dictyostelium discoideum (taxid: 44689)

>sp|Q13619|CUL4A_HUMAN Cullin-4A OS=Homo sapiens GN=CUL4A PE=1 SV=3

 Score = 59.7 bits (143), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 74/135 (54%), Gaps = 8/135 (5%)

Query: 42  LYSSVYSTCIQGPHHGYSAQLYNKCKQDLEEYMSSTVFPSLSEKHDEHL-LRELVKRFAN 100
           LY +V + C     H  S  LY + +Q  E+++ + + P   +  D  L L+++   + +
Sbjct: 86  LYQAVENLC----SHKVSPMLYKQLRQACEDHVQAQILPFREDSLDSVLFLKKINTCWQD 141

Query: 101 HKVMVKWLALCFNYLERYYIRQRA-LPTISEIGLTCFRDLVFD--ALKHKAKDVVITLID 157
           H   +  +   F +L+R Y+ Q + LP+I ++GL  FR  +     ++ K  D ++ LI+
Sbjct: 142 HCRQMIMIRSIFLFLDRTYVLQNSTLPSIWDMGLELFRTHIISDKMVQSKTIDGILLLIE 201

Query: 158 REREGEEIDRALLKN 172
           RER GE +DR+LL++
Sbjct: 202 RERSGEAVDRSLLRS 216

Core component of multiple cullin-RING-based E3 ubiquitin-protein ligase complexes which mediate the ubiquitination and subsequent proteasomal degradation of target proteins. As a scaffold protein may contribute to catalysis through positioning of the substrate and the ubiquitin-conjugating enzyme. The E3 ubiquitin-protein ligase activity of the complex is dependent on the neddylation of the cullin subunit and is inhibited by the association of the deneddylated cullin subunit with TIP120A/CAND1. The functional specificity of the E3 ubiquitin-protein ligase complex depends on the variable substrate recognition component. DCX(DET1-COP1) directs ubiquitination of JUN. DCX(DDB2) directs ubiquitination of XPC. In association with RBX1, DDB1 and DDB2 is required for histone H3 and histone H4 ubiquitination in response to ultraviolet and may be important for subsequent DNA repair. DCX(DTL) plays a role in PCNA-dependent polyubiquitination of CDT1 and MDM2-dependent ubiquitination of TP53 in response to radiation-induced DNA damage and during DNA replication. In association with DDB1 and SKP2 probably is involved in ubiquitination of CDKN1B/p27kip. Is involved in ubiquitination of HOXA9.

Homo sapiens (taxid: 9606)

>sp|Q9JLV5|CUL3_MOUSE Cullin-3 OS=Mus musculus GN=Cul3 PE=1 SV=1

 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/164 (21%), Positives = 83/164 (50%), Gaps = 15/164 (9%)

Query: 12  WDIIQKWITKL-RRISEGLPEPPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYNKCKQDL 70
           WD+++  I ++ R+ + GL         +  LY + Y+  +    H +  +LY   ++ +
Sbjct: 34  WDLLKNAIQEIQRKNNSGL--------SFEELYRNAYTMVL----HKHGEKLYTGLREVV 81

Query: 71  EEYMSSTVFPSLSEKHDEHLLRELVKRFANHKVMVKWLALCFNYLERYYIRQRALPTISE 130
            E++ + V   +    + + L+ L + + +H+  +  +     Y++R Y++Q  +  +  
Sbjct: 82  TEHLINKVREDVLNSLNNNFLQTLNQAWNDHQTAMVMIRDILMYMDRVYVQQNNVENVYN 141

Query: 131 IGLTCFRDLV--FDALKHKAKDVVITLIDREREGEEIDRALLKN 172
           +GL  FRD V  +  ++   +  ++ +I RER+GE +DR  ++N
Sbjct: 142 LGLIIFRDQVVRYGCIRDHLRQTLLDMIARERKGEVVDRGAIRN 185

Core component of multiple cullin-RING-based BCR (BTB-CUL3-RBX1) E3 ubiquitin-protein ligase complexes which mediate the ubiquitination and subsequent proteasomal degradation of target proteins. As a scaffold protein may contribute to catalysis through positioning of the substrate and the ubiquitin-conjugating enzyme. The E3 ubiquitin-protein ligase activity of the complex is dependent on the neddylation of the cullin subunit and is inhibited by the association of the deneddylated cullin subunit with TIP120A/CAND1 (By similarity). The functional specificity of the BCR complex depends on the BTB domain-containing protein as the susbstrate recognition component. BCR(SPOP) is involved in ubiquitination of BMI1/PCGF4, H2AFY and DAXX, and probably GLI2 or GLI3. BCR(KLHL9-KLHL13) controls the dynamic behavior of AURKB on mitotic chromosomes and thereby coordinates faithful mitotic progression and completion of cytokinesis. BCR(KLHL3) acts as a regulator of ion transport in the distal nephron; possibly by mediating ubiquitination of SLC12A3/NCC. Involved in ubiquitination of cyclin E and of cyclin D1 (in vitro) thus involved in regulation of G1/S transition (By similarity). BCR(KLHL12) is involved in ER-Golgi transport by regulating the size of COPII coats, thereby playing a key role in collagen export, which is required for embryonic stem (ES) cells division: BCR(KLHL12) acts by mediating monoubiquitination of SEC31 (SEC31A or SEC31B).

Mus musculus (taxid: 10090)

>sp|B5DF89|CUL3_RAT Cullin-3 OS=Rattus norvegicus GN=Cul3 PE=1 SV=2

 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/164 (21%), Positives = 83/164 (50%), Gaps = 15/164 (9%)

Query: 12  WDIIQKWITKL-RRISEGLPEPPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYNKCKQDL 70
           WD+++  I ++ R+ + GL         +  LY + Y+  +    H +  +LY   ++ +
Sbjct: 34  WDLLKNAIQEIQRKNNSGL--------SFEELYRNAYTMVL----HKHGEKLYTGLREVV 81

Query: 71  EEYMSSTVFPSLSEKHDEHLLRELVKRFANHKVMVKWLALCFNYLERYYIRQRALPTISE 130
            E++ + V   +    + + L+ L + + +H+  +  +     Y++R Y++Q  +  +  
Sbjct: 82  TEHLINKVREDVLNSLNNNFLQTLNQAWNDHQTAMVMIRDILMYMDRVYVQQNNVENVYN 141

Query: 131 IGLTCFRDLV--FDALKHKAKDVVITLIDREREGEEIDRALLKN 172
           +GL  FRD V  +  ++   +  ++ +I RER+GE +DR  ++N
Sbjct: 142 LGLIIFRDQVVRYGCIRDHLRQTLLDMIARERKGEVVDRGAIRN 185

Core component of multiple cullin-RING-based BCR (BTB-CUL3-RBX1) E3 ubiquitin-protein ligase complexes which mediate the ubiquitination and subsequent proteasomal degradation of target proteins. As a scaffold protein may contribute to catalysis through positioning of the substrate and the ubiquitin-conjugating enzyme. The E3 ubiquitin-protein ligase activity of the complex is dependent on the neddylation of the cullin subunit and is inhibited by the association of the deneddylated cullin subunit with TIP120A/CAND1 (By similarity). The functional specificity of the BCR complex depends on the BTB domain-containing protein as the susbstrate recognition component. BCR(SPOP) is involved in ubiquitination of BMI1/PCGF4, H2AFY and DAXX, and probably GLI2 or GLI3. BCR(KLHL9-KLHL13) controls the dynamic behavior of AURKB on mitotic chromosomes and thereby coordinates faithful mitotic progression and completion of cytokinesis. BCR(KLHL12) is involved in ER-Golgi transport by regulating the size of COPII coats, thereby playing a key role in collagen export, which is required for embryonic stem (ES) cells division: BCR(KLHL12) acts by mediating monoubiquitination of SEC31 (SEC31A or SEC31B). BCR(KLHL3) acts as a regulator of ion transport in the distal nephron; possibly by mediating ubiquitination of SLC12A3/NCC. Involved in ubiquitination of cyclin E and of cyclin D1 (in vitro) thus involved in regulation of G1/S transition.

Rattus norvegicus (taxid: 10116)

>sp|Q13618|CUL3_HUMAN Cullin-3 OS=Homo sapiens GN=CUL3 PE=1 SV=2

 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/164 (21%), Positives = 83/164 (50%), Gaps = 15/164 (9%)

Query: 12  WDIIQKWITKL-RRISEGLPEPPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYNKCKQDL 70
           WD+++  I ++ R+ + GL         +  LY + Y+  +    H +  +LY   ++ +
Sbjct: 34  WDLLKNAIQEIQRKNNSGL--------SFEELYRNAYTMVL----HKHGEKLYTGLREVV 81

Query: 71  EEYMSSTVFPSLSEKHDEHLLRELVKRFANHKVMVKWLALCFNYLERYYIRQRALPTISE 130
            E++ + V   +    + + L+ L + + +H+  +  +     Y++R Y++Q  +  +  
Sbjct: 82  TEHLINKVREDVLNSLNNNFLQTLNQAWNDHQTAMVMIRDILMYMDRVYVQQNNVENVYN 141

Query: 131 IGLTCFRDLV--FDALKHKAKDVVITLIDREREGEEIDRALLKN 172
           +GL  FRD V  +  ++   +  ++ +I RER+GE +DR  ++N
Sbjct: 142 LGLIIFRDQVVRYGCIRDHLRQTLLDMIARERKGEVVDRGAIRN 185

Core component of multiple cullin-RING-based BCR (BTB-CUL3-RBX1) E3 ubiquitin-protein ligase complexes which mediate the ubiquitination and subsequent proteasomal degradation of target proteins. As a scaffold protein may contribute to catalysis through positioning of the substrate and the ubiquitin-conjugating enzyme. The E3 ubiquitin-protein ligase activity of the complex is dependent on the neddylation of the cullin subunit and is inhibited by the association of the deneddylated cullin subunit with TIP120A/CAND1 (By similarity). The functional specificity of the BCR complex depends on the BTB domain-containing protein as the susbstrate recognition component. BCR(SPOP) is involved in ubiquitination of BMI1/PCGF4, H2AFY and DAXX, and probably GLI2 or GLI3. BCR(KLHL9-KLHL13) controls the dynamic behavior of AURKB on mitotic chromosomes and thereby coordinates faithful mitotic progression and completion of cytokinesis. BCR(KLHL12) is involved in ER-Golgi transport by regulating the size of COPII coats, thereby playing a key role in collagen export, which is required for embryonic stem (ES) cells division: BCR(KLHL12) acts by mediating monoubiquitination of SEC31 (SEC31A or SEC31B). BCR(KLHL3) acts as a regulator of ion transport in the distal nephron; possibly by mediating ubiquitination of SLC12A3/NCC. Involved in ubiquitination of cyclin E and of cyclin D1 (in vitro) thus involved in regulation of G1/S transition.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	172
241872566	744	CULLIN1-like protein 1 [Lilium longiflor	0.982	0.227	0.627	2e-60
356563944	744	PREDICTED: cullin-1-like isoform 1 [Glyc	0.982	0.227	0.627	4e-60
356563946	709	PREDICTED: cullin-1-like isoform 2 [Glyc	0.982	0.238	0.627	5e-60
255551707	744	Cullin-1, putative [Ricinus communis] gi	0.982	0.227	0.621	6e-60
356529771	744	PREDICTED: cullin-1-like [Glycine max]	0.982	0.227	0.621	1e-59
356556122	744	PREDICTED: cullin-1-like [Glycine max]	0.982	0.227	0.621	1e-59
386688470	744	cullin 1-like protein B [Prunus avium]	0.982	0.227	0.615	2e-59
225432272	744	PREDICTED: cullin-1 isoform 1 [Vitis vin	0.982	0.227	0.609	3e-59
297381028	708	plastid CUL1 [Hevea brasiliensis]	0.982	0.238	0.633	4e-59
356521881	739	PREDICTED: cullin-1-like isoform 2 [Glyc	0.982	0.228	0.615	5e-59

>gi|241872566|gb|ACS69068.1| CULLIN1-like protein 1 [Lilium longiflorum]

 Score =  237 bits (604), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 106/169 (62%), Positives = 141/169 (83%)

Query: 4   KEIDMDEGWDIIQKWITKLRRISEGLPEPPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLY 63
           K ID+++GW+ +QK ITKL++I EGLPEP F+ +DY+MLY+++Y+ C Q P H YS QLY
Sbjct: 7   KTIDLEQGWEFMQKGITKLKKILEGLPEPQFSSEDYMMLYTTIYNMCTQKPPHDYSQQLY 66

Query: 64  NKCKQDLEEYMSSTVFPSLSEKHDEHLLRELVKRFANHKVMVKWLALCFNYLERYYIRQR 123
           +K ++  EEY+S+TV PSL EKHDE +LRELVKR+ NHKVMV+WL+  F+YL+RY+I +R
Sbjct: 67  DKYREAFEEYISTTVLPSLREKHDEFMLRELVKRWDNHKVMVRWLSRFFHYLDRYFIARR 126

Query: 124 ALPTISEIGLTCFRDLVFDALKHKAKDVVITLIDREREGEEIDRALLKN 172
           +LP + E+GL CFRDLVF+ +K KA+D VI+LIDREREGE+IDRALLKN
Sbjct: 127 SLPALREVGLACFRDLVFNMVKGKARDAVISLIDREREGEQIDRALLKN 175

Source: Lilium longiflorum

Species: Lilium longiflorum

Genus: Lilium

Family: Liliaceae

Order: Liliales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563944|ref|XP_003550217.1| PREDICTED: cullin-1-like isoform 1 [Glycine max]

 Score =  235 bits (600), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 106/169 (62%), Positives = 139/169 (82%)

Query: 4   KEIDMDEGWDIIQKWITKLRRISEGLPEPPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLY 63
           K ID+++GWD +QK ITKL+ I EGLPEP F+ +DY+MLY+++Y+ C Q P H YS QLY
Sbjct: 7   KTIDLEQGWDFMQKGITKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQKPPHDYSQQLY 66

Query: 64  NKCKQDLEEYMSSTVFPSLSEKHDEHLLRELVKRFANHKVMVKWLALCFNYLERYYIRQR 123
           +K K+  EEY+ STV PSL EKHDE +LRELVKR+ANHK+MV+WL+  F+YL+RY+I +R
Sbjct: 67  DKYKESFEEYIVSTVLPSLREKHDEFMLRELVKRWANHKIMVRWLSRFFHYLDRYFIARR 126

Query: 124 ALPTISEIGLTCFRDLVFDALKHKAKDVVITLIDREREGEEIDRALLKN 172
           +LP ++E+GLTCFRDLV+  L  K +D VI+LID+EREGE+IDRALLKN
Sbjct: 127 SLPPLNEVGLTCFRDLVYKELNGKVRDAVISLIDQEREGEQIDRALLKN 175

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563946|ref|XP_003550218.1| PREDICTED: cullin-1-like isoform 2 [Glycine max]

 Score =  235 bits (599), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 106/169 (62%), Positives = 139/169 (82%)

Query: 4   KEIDMDEGWDIIQKWITKLRRISEGLPEPPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLY 63
           K ID+++GWD +QK ITKL+ I EGLPEP F+ +DY+MLY+++Y+ C Q P H YS QLY
Sbjct: 7   KTIDLEQGWDFMQKGITKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQKPPHDYSQQLY 66

Query: 64  NKCKQDLEEYMSSTVFPSLSEKHDEHLLRELVKRFANHKVMVKWLALCFNYLERYYIRQR 123
           +K K+  EEY+ STV PSL EKHDE +LRELVKR+ANHK+MV+WL+  F+YL+RY+I +R
Sbjct: 67  DKYKESFEEYIVSTVLPSLREKHDEFMLRELVKRWANHKIMVRWLSRFFHYLDRYFIARR 126

Query: 124 ALPTISEIGLTCFRDLVFDALKHKAKDVVITLIDREREGEEIDRALLKN 172
           +LP ++E+GLTCFRDLV+  L  K +D VI+LID+EREGE+IDRALLKN
Sbjct: 127 SLPPLNEVGLTCFRDLVYKELNGKVRDAVISLIDQEREGEQIDRALLKN 175

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255551707|ref|XP_002516899.1| Cullin-1, putative [Ricinus communis] gi|223543987|gb|EEF45513.1| Cullin-1, putative [Ricinus communis]

 Score =  234 bits (598), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 105/169 (62%), Positives = 140/169 (82%)

Query: 4   KEIDMDEGWDIIQKWITKLRRISEGLPEPPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLY 63
           K ID+++GW+ +QK ITKL+ I EGLPEP F+ +DY+MLY+++Y+ C Q P H YS QLY
Sbjct: 7   KTIDLEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQKPPHDYSQQLY 66

Query: 64  NKCKQDLEEYMSSTVFPSLSEKHDEHLLRELVKRFANHKVMVKWLALCFNYLERYYIRQR 123
           +K ++  EEY++STV PSL EKHDE +LRELVKR+ANHKVMV+WL+  F+YL+RY+I +R
Sbjct: 67  DKYRESFEEYITSTVLPSLREKHDEFMLRELVKRWANHKVMVRWLSRFFHYLDRYFIARR 126

Query: 124 ALPTISEIGLTCFRDLVFDALKHKAKDVVITLIDREREGEEIDRALLKN 172
           +LP ++E+GLTCFRDLV+  L  K +D VI+LID+EREGE+IDRALLKN
Sbjct: 127 SLPPLNEVGLTCFRDLVYQELNAKVRDAVISLIDQEREGEQIDRALLKN 175

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356529771|ref|XP_003533461.1| PREDICTED: cullin-1-like [Glycine max]

 Score =  234 bits (596), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 105/169 (62%), Positives = 138/169 (81%)

Query: 4   KEIDMDEGWDIIQKWITKLRRISEGLPEPPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLY 63
           K ID+D+GWD +QK I KL+ I EGLPEP F+ +DY+MLY+++Y+ C Q P H YS QLY
Sbjct: 7   KTIDLDQGWDFMQKGILKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQKPPHDYSQQLY 66

Query: 64  NKCKQDLEEYMSSTVFPSLSEKHDEHLLRELVKRFANHKVMVKWLALCFNYLERYYIRQR 123
           +K ++  EEY+ STV PSL EKHDE +LRELVKR+ANHK+MV+WL+  F+YL+RY+I +R
Sbjct: 67  DKYRESFEEYIVSTVLPSLREKHDEFMLRELVKRWANHKIMVRWLSRFFHYLDRYFIARR 126

Query: 124 ALPTISEIGLTCFRDLVFDALKHKAKDVVITLIDREREGEEIDRALLKN 172
           +LP ++E+GLTCFRDLV+  L  K +D VI+LID+EREGE+IDRALLKN
Sbjct: 127 SLPPLNEVGLTCFRDLVYKELNGKVRDAVISLIDQEREGEQIDRALLKN 175

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556122|ref|XP_003546376.1| PREDICTED: cullin-1-like [Glycine max]

 Score =  234 bits (596), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 105/169 (62%), Positives = 138/169 (81%)

Query: 4   KEIDMDEGWDIIQKWITKLRRISEGLPEPPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLY 63
           K ID+D+GWD +QK I KL+ I EGLPEP F+ +DY+MLY+++Y+ C Q P H YS QLY
Sbjct: 7   KTIDLDQGWDFMQKGILKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQKPPHDYSQQLY 66

Query: 64  NKCKQDLEEYMSSTVFPSLSEKHDEHLLRELVKRFANHKVMVKWLALCFNYLERYYIRQR 123
           +K ++  EEY+ STV PSL EKHDE +LRELVKR+ANHK+MV+WL+  F+YL+RY+I +R
Sbjct: 67  DKYRESFEEYIVSTVLPSLREKHDEFMLRELVKRWANHKIMVRWLSRFFHYLDRYFIARR 126

Query: 124 ALPTISEIGLTCFRDLVFDALKHKAKDVVITLIDREREGEEIDRALLKN 172
           +LP ++E+GLTCFRDLV+  L  K +D VI+LID+EREGE+IDRALLKN
Sbjct: 127 SLPPLNEVGLTCFRDLVYKELNGKVRDAVISLIDQEREGEQIDRALLKN 175

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|386688470|gb|AFJ21665.1| cullin 1-like protein B [Prunus avium]

 Score =  233 bits (595), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 104/169 (61%), Positives = 139/169 (82%)

Query: 4   KEIDMDEGWDIIQKWITKLRRISEGLPEPPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLY 63
           K ID+++GW+ +QK ITKL+ I EGLPEP F+ +DY+MLY+++Y+ C Q P H YS QLY
Sbjct: 7   KTIDLEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQKPPHDYSQQLY 66

Query: 64  NKCKQDLEEYMSSTVFPSLSEKHDEHLLRELVKRFANHKVMVKWLALCFNYLERYYIRQR 123
           +K K+  EEY++STV PSL EKHDE +LRELVKR+ NHK+MV+WL+  F+YL+RY+I +R
Sbjct: 67  DKYKESFEEYITSTVLPSLREKHDEFMLRELVKRWTNHKIMVRWLSRFFHYLDRYFIARR 126

Query: 124 ALPTISEIGLTCFRDLVFDALKHKAKDVVITLIDREREGEEIDRALLKN 172
           +LP ++E+GLTCFRDLV+  L  K +D VI+LID+EREGE+IDRALLKN
Sbjct: 127 SLPPLNEVGLTCFRDLVYQELNAKVRDAVISLIDQEREGEQIDRALLKN 175

Source: Prunus avium

Species: Prunus avium

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432272|ref|XP_002272195.1| PREDICTED: cullin-1 isoform 1 [Vitis vinifera] gi|297736859|emb|CBI26060.3| unnamed protein product [Vitis vinifera]

 Score =  232 bits (592), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 103/169 (60%), Positives = 140/169 (82%)

Query: 4   KEIDMDEGWDIIQKWITKLRRISEGLPEPPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLY 63
           K ID+++GW+ +QK ITKL+ I EGLPEP F+ +DY+MLY+++Y+ C Q P H YS QLY
Sbjct: 7   KTIDLEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQKPPHDYSQQLY 66

Query: 64  NKCKQDLEEYMSSTVFPSLSEKHDEHLLRELVKRFANHKVMVKWLALCFNYLERYYIRQR 123
           +K ++  EEY+++TV PSL EKHDE +LRELVKR++NHKVMV+WL+  F+YL+RY+I +R
Sbjct: 67  DKYRESFEEYITTTVLPSLREKHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFIARR 126

Query: 124 ALPTISEIGLTCFRDLVFDALKHKAKDVVITLIDREREGEEIDRALLKN 172
           +LP ++E+GLTCFRDLV+  L  K +D VI+LID+EREGE+IDRALLKN
Sbjct: 127 SLPALNEVGLTCFRDLVYQELYSKVRDAVISLIDQEREGEQIDRALLKN 175

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297381028|gb|ADI39635.1| plastid CUL1 [Hevea brasiliensis]

 Score =  232 bits (592), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 107/169 (63%), Positives = 138/169 (81%)

Query: 4   KEIDMDEGWDIIQKWITKLRRISEGLPEPPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLY 63
           K I +DEG + IQK ITKL+ I EGLPEP F+ +DY+MLY+++Y+ C Q P H YS QLY
Sbjct: 7   KTIYLDEGLEFIQKGITKLKNILEGLPEPKFSSEDYMMLYTTIYNMCTQKPPHDYSQQLY 66

Query: 64  NKCKQDLEEYMSSTVFPSLSEKHDEHLLRELVKRFANHKVMVKWLALCFNYLERYYIRQR 123
           NK ++  EEY++S V PSL EKHDE +LRELVKR+ANHKVMVKWL+  F+YL+RY+I ++
Sbjct: 67  NKYRESFEEYITSMVLPSLREKHDEFMLRELVKRWANHKVMVKWLSCIFHYLDRYFIARK 126

Query: 124 ALPTISEIGLTCFRDLVFDALKHKAKDVVITLIDREREGEEIDRALLKN 172
           +LPT++E+GLTCFRDLV+  L  K +D VI+LID+EREGE+IDRALLKN
Sbjct: 127 SLPTLNEVGLTCFRDLVYQELNGKVRDAVISLIDQEREGEQIDRALLKN 175

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521881|ref|XP_003529579.1| PREDICTED: cullin-1-like isoform 2 [Glycine max]

 Score =  232 bits (591), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 104/169 (61%), Positives = 138/169 (81%)

Query: 4   KEIDMDEGWDIIQKWITKLRRISEGLPEPPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLY 63
           K ID+++GWD + K ITKL+ I EGLPEP F+ +DY+MLY+++Y+ C Q P H YS QLY
Sbjct: 7   KTIDLEQGWDFMLKGITKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQKPPHDYSQQLY 66

Query: 64  NKCKQDLEEYMSSTVFPSLSEKHDEHLLRELVKRFANHKVMVKWLALCFNYLERYYIRQR 123
           +K K+  EEY+ STV PSL EKHDE +LRELVKR+ANHK+MV+WL+  F+YL+RY+I +R
Sbjct: 67  DKYKESFEEYIVSTVLPSLREKHDEFMLRELVKRWANHKIMVRWLSRFFHYLDRYFIARR 126

Query: 124 ALPTISEIGLTCFRDLVFDALKHKAKDVVITLIDREREGEEIDRALLKN 172
           +LP ++E+GLTCFRDL++  L  K +D VI+LID+EREGE+IDRALLKN
Sbjct: 127 SLPPLNEVGLTCFRDLIYKELNGKVRDAVISLIDQEREGEQIDRALLKN 175

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	172
TAIR|locus:2132377	738	CUL1 "cullin 1" [Arabidopsis t	1.0	0.233	0.534	5.2e-47
TAIR|locus:2018645	721	AT1G43140 [Arabidopsis thalian	0.976	0.233	0.438	1e-37
TAIR|locus:2025881	374	AT1G59790 [Arabidopsis thalian	0.970	0.446	0.473	3.9e-37
TAIR|locus:2024755	742	CUL2 "cullin 2" [Arabidopsis t	1.0	0.231	0.410	3.3e-33
TAIR|locus:2025941	255	AT1G59800 [Arabidopsis thalian	0.848	0.572	0.381	1.6e-24
DICTYBASE|DDB_G0284903	769	culC "cullin C" [Dictyostelium	0.732	0.163	0.270	2.8e-07
UNIPROTKB|A6NE76	234	CUL4B "Cullin-4B" [Homo sapien	0.889	0.653	0.226	0.00019
MGI|MGI:1919834	970	Cul4b "cullin 4B" [Mus musculu	0.767	0.136	0.241	0.0004
UNIPROTKB|E2RMN1	982	CUL4B "Uncharacterized protein	0.889	0.155	0.232	0.00062
UNIPROTKB|H7C1L6	192	CUL3 "Cullin-3" [Homo sapiens	0.732	0.656	0.215	0.00075

TAIR|locus:2132377 CUL1 "cullin 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 495 (179.3 bits), Expect = 5.2e-47, P = 5.2e-47
 Identities = 92/172 (53%), Positives = 124/172 (72%)

Query:     1 MGHKEIDMDEGWDIIQKWITKLRRISEGLPEPPFNVDDYVMLYSSVYSTCIQGPHHGYSA 60
             M  K ID+++GWD +Q  ITKL+RI EGL EP F+ + Y+MLY+++Y+ C Q P H YS 
Sbjct:     1 MERKTIDLEQGWDYMQTGITKLKRILEGLNEPAFDSEQYMMLYTTIYNMCTQKPPHDYSQ 60

Query:    61 QLYNKCKQDLEEYMSSTVFPSLSEKHDEHLLRELVKRFANHKVMVKWLALCFNYLERYYI 120
             QLY+K ++  EEY++STV P+L EKHDE +LREL KR++NHKVMV+WL+  F YL+RY+I
Sbjct:    61 QLYDKYREAFEEYINSTVLPALREKHDEFMLRELFKRWSNHKVMVRWLSRFFYYLDRYFI 120

Query:   121 RQRALPTISEIGLTCFRDLVFDALKHKAKDVVITLXXXXXXXXXXXXALLKN 172
              +R+LP ++E+GLTCFRDLV++ L  K K  VI L            ALLKN
Sbjct:   121 ARRSLPPLNEVGLTCFRDLVYNELHSKVKQAVIALVDKEREGEQIDRALLKN 172

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0000151 "ubiquitin ligase complex" evidence=IPI

GO:0009733 "response to auxin stimulus" evidence=IMP

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0005819 "spindle" evidence=IDA

GO:0009524 "phragmoplast" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0000794 "condensed nuclear chromosome" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0009753 "response to jasmonic acid stimulus" evidence=IMP

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=TAS

GO:0010265 "SCF complex assembly" evidence=IPI

GO:0042752 "regulation of circadian rhythm" evidence=RCA;IMP

GO:0005829 "cytosol" evidence=IDA

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

GO:0006486 "protein glycosylation" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0009790 "embryo development" evidence=RCA

GO:0009880 "embryonic pattern specification" evidence=RCA

GO:0010072 "primary shoot apical meristem specification" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010431 "seed maturation" evidence=RCA

GO:0010564 "regulation of cell cycle process" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0045595 "regulation of cell differentiation" evidence=RCA

GO:0048316 "seed development" evidence=RCA

GO:0048366 "leaf development" evidence=IMP;RCA

GO:0048825 "cotyledon development" evidence=RCA

GO:0051301 "cell division" evidence=RCA

GO:0010087 "phloem or xylem histogenesis" evidence=IMP

TAIR|locus:2018645 AT1G43140 [Arabidopsis thaliana (taxid:3702)]

 Score = 411 (149.7 bits), Expect = 1.0e-37, P = 1.0e-37
 Identities = 75/171 (43%), Positives = 116/171 (67%)

Query:     4 KE-IDMDEGWDIIQKWITKLRRISEGLPEPPFNVDDYVMLYSSVYSTCIQGPHHGYSAQL 62
             KE I ++EGW +++  + KL+RI E L EPPF+   Y+ LY+ +Y  C+Q P + YS +L
Sbjct:    12 KELILLEEGWSVMKTGVAKLQRILEDLSEPPFDPGQYINLYTIIYDMCLQQPPNDYSQEL 71

Query:    63 YNKCKQDLEEYMSSTVFPSLSEKHDEHLLRELVKRFANHKVMVKWLA-LCFNYLERYYIR 121
             YNK +  ++ Y   TV PS+ E+H E++LRELVKR+ANHK++V+WL+  CF YL+R+Y+ 
Sbjct:    72 YNKYRGVVDHYNKETVLPSMRERHGEYMLRELVKRWANHKILVRWLSRFCF-YLDRFYVA 130

Query:   122 QRALPTISEIGLTCFRDLVFDALKHKAKDVVITLXXXXXXXXXXXXALLKN 172
             +R LPT++++G T F DLV+  ++ +AKDV++ L             L+KN
Sbjct:   131 RRGLPTLNDVGFTSFHDLVYQEIQSEAKDVLLALIHKEREGEQIDRTLVKN 181

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0031461 "cullin-RING ubiquitin ligase complex" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

TAIR|locus:2025881 AT1G59790 [Arabidopsis thaliana (taxid:3702)]

 Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
 Identities = 81/171 (47%), Positives = 110/171 (64%)

Query:     4 KEIDMDEGWDIIQKWITKLRRISEGLPEPPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLY 63
             ++I  +EGW  IQK ITKL RI EG PEP F   +   LY+ +Y  C+Q     YS QLY
Sbjct:    10 RQIKFEEGWSNIQKGITKLIRILEGEPEPTFYFSECFKLYTIIYDMCVQ--RSDYSQQLY 67

Query:    64 NKCKQDLEEYMSSTVFPSLSEKHDEHLLRELVKRFANHKVMVKWLALCFNYLERYYIRQR 123
              K ++ +E+Y   TV PSL EKHDE +LRELVKR+ NHK+MVKWL+  F Y++R+ +R+ 
Sbjct:    68 EKYRKVIEDYTIQTVLPSLREKHDEDMLRELVKRWNNHKIMVKWLSKFFVYIDRHLVRRS 127

Query:   124 ALP--TISEIGLTCFRDLVFDALKHKAKDVVITLXXXXXXXXXXXXALLKN 172
              +P  ++ E+GLTCF DLV+  ++  AK+VVI L            AL+KN
Sbjct:   128 KIPIPSLDEVGLTCFLDLVYCEMQSTAKEVVIALIHKEREGEQIDRALVKN 178

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0031461 "cullin-RING ubiquitin ligase complex" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

TAIR|locus:2024755 CUL2 "cullin 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 370 (135.3 bits), Expect = 3.3e-33, P = 3.3e-33
 Identities = 71/173 (41%), Positives = 110/173 (63%)

Query:     1 MGHKEIDMDEGWDIIQKWITKLRRISEGLP-EPPFNVDDYVMLYSSVYSTCIQGPHHGYS 59
             M  K+  ++ GW +++  + KL++I E +P EPPF+    + LY++V++ C Q P + YS
Sbjct:     1 MAKKDSVLEAGWSVMEAGVAKLQKILEEVPDEPPFDPVQRMQLYTTVHNLCTQKPPNDYS 60

Query:    60 AQLYNKCKQDLEEYMSSTVFPSLSEKHDEHLLRELVKRFANHKVMVKWLALCFNYLERYY 119
              Q+Y++      +Y   TV P++ EKH E++LRELVKR+AN K++V+WL+  F YL+R+Y
Sbjct:    61 QQIYDRYGGVYVDYNKQTVLPAIREKHGEYMLRELVKRWANQKILVRWLSHFFEYLDRFY 120

Query:   120 IRQRALPTISEIGLTCFRDLVFDALKHKAKDVVITLXXXXXXXXXXXXALLKN 172
              R+ + PT+S +G   FRDLV+  L+ KAKD V+ L            ALLKN
Sbjct:   121 TRRGSHPTLSAVGFISFRDLVYQELQSKAKDAVLALIHKEREGEQIDRALLKN 173

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0031461 "cullin-RING ubiquitin ligase complex" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0019005 "SCF ubiquitin ligase complex" evidence=ISS

GO:0009941 "chloroplast envelope" evidence=IDA

TAIR|locus:2025941 AT1G59800 [Arabidopsis thaliana (taxid:3702)]

 Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
 Identities = 58/152 (38%), Positives = 92/152 (60%)

Query:     5 EIDMDEGWDIIQKWITKLRRISEGLPEPPFNVDDYVMLYSSVYSTCI-QGPHHGYSAQLY 63
             EI  +  W  IQ+  TKL R+ EG  EP FN +  +M++++ Y  C  + P      QLY
Sbjct:     6 EIKFEVEWSNIQQGFTKLIRMIEGESEPAFNQEIMMMMHTATYRICAYKNPQ-----QLY 60

Query:    64 NKCKQDLEEYMSSTVFPSLSEKHDEHLLRELVKRFANHKVMVKWLALCFNYLERYYIRQR 123
             +K ++ +E Y   TV PSL EKHDE +LREL KR+  HK++V+  +    YL+  ++ ++
Sbjct:    61 DKYRELIENYAIQTVLPSLREKHDECMLRELAKRWNAHKLLVRLFSRRLVYLDDSFLSKK 120

Query:   124 ALPTISEIGLTCFRDLVFDALKHKAKDVVITL 155
              LP++ E+GL CFRD V+  ++  A + ++ L
Sbjct:   121 GLPSLREVGLNCFRDQVYREMQSMAAEAILAL 152

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0031461 "cullin-RING ubiquitin ligase complex" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

DICTYBASE|DDB_G0284903 culC "cullin C" [Dictyostelium discoideum (taxid:44689)]

 Score = 129 (50.5 bits), Expect = 2.8e-07, P = 2.8e-07
 Identities = 36/133 (27%), Positives = 67/133 (50%)

Query:    42 LYSSVYSTCIQGPHHGYSAQLYNKCKQDLEEYMSSTVFPSLSEKHDEHLLRELVKRFANH 101
             LY + Y+  +Q   HG    LYN  K+ +++++ + V  ++SE  DE  L EL   + NH
Sbjct:    53 LYRNGYNMVLQ--KHG--DLLYNNLKKMVDKHLKA-VAKTVSESIDEKFLLELNSSWINH 107

Query:   102 KVMVKWLALCFNYLERYYIRQRALPTISEIGLTCFRDLVF--DALKHKAKDVVITLXXXX 159
             K  +  +     Y++R Y++Q  L ++ ++GL  FRD V     +K +  + ++++    
Sbjct:   108 KTSMLMIRDILMYMDRNYVKQNNLSSVFDLGLYLFRDNVAHCSTIKDRLLNTLLSMVQKE 167

Query:   160 XXXXXXXXALLKN 172
                      L+KN
Sbjct:   168 REGEVIDRILIKN 180

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0031461 "cullin-RING ubiquitin ligase complex" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

UNIPROTKB|A6NE76 CUL4B "Cullin-4B" [Homo sapiens (taxid:9606)]

 Score = 106 (42.4 bits), Expect = 0.00019, P = 0.00019
 Identities = 38/168 (22%), Positives = 84/168 (50%)

Query:     9 DEGWDIIQKWITKLRRISEGLPEPPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYNKCKQ 68
             DE W  +++ +  ++  S  +    +N+++   LY +V + C     +  SA LY + +Q
Sbjct:    18 DETWQKLKEAVEAIQN-STSIK---YNLEE---LYQAVENLC----SYKISANLYKQLRQ 66

Query:    69 DLEEYMSSTVFPSLSEKHDEHL-LRELVKRFANHKVMVKWLALCFNYLERYYIRQRA-LP 126
               E+++ + +     +  D  L L+++ + + NH   +  +   F +L+R Y+ Q + LP
Sbjct:    67 ICEDHIKAQIHQFREDSLDSVLFLKKIDRCWQNHCRQMIMIRSIFLFLDRTYVLQNSMLP 126

Query:   127 TISEIGLTCFR-DLVFDA-LKHKAKDVVITLXXXXXXXXXXXXALLKN 172
             +I ++GL  FR  ++ D  +++K  D ++ L            +LL++
Sbjct:   127 SIWDMGLELFRAHIISDQKVQNKTIDGILLLIERERNGEAIDRSLLRS 174

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0031461 "cullin-RING ubiquitin ligase complex" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

MGI|MGI:1919834 Cul4b "cullin 4B" [Mus musculus (taxid:10090)]

 Score = 110 (43.8 bits), Expect = 0.00040, P = 0.00040
 Identities = 35/145 (24%), Positives = 73/145 (50%)

Query:     9 DEGWDIIQKWITKLRRISEGLPEPPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYNKCKQ 68
             DE W  +++ +  ++  S  +    +N+++   LY +V + C     H  SA LY + +Q
Sbjct:   271 DETWQKLKEAVEAIQN-STSIK---YNLEE---LYQAVENLC----SHKISANLYKQLRQ 319

Query:    69 DLEEYMSSTVFPSLSEKHDEHL-LRELVKRFANHKVMVKWLALCFNYLERYYIRQRA-LP 126
               E+++ + +     +  D  L L+++ + + NH   +  +   F +L+R Y+ Q + LP
Sbjct:   320 ICEDHIKAQIHQFREDSLDSVLFLKKIDRCWQNHCRQMIMIRSIFLFLDRTYVLQNSMLP 379

Query:   127 TISEIGLTCFRDLVFDALKHKAKDV 151
             +I ++GL  FR  +    K + K +
Sbjct:   380 SIWDMGLELFRAHIISDQKVQTKTI 404

GO:0005634 "nucleus" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0031461 "cullin-RING ubiquitin ligase complex" evidence=IEA

GO:0031465 "Cul4B-RING ubiquitin ligase complex" evidence=ISO

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0045732 "positive regulation of protein catabolic process" evidence=IMP

GO:0045750 "positive regulation of S phase of mitotic cell cycle" evidence=IMP

UNIPROTKB|E2RMN1 CUL4B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 109 (43.4 bits), Expect = 0.00062, P = 0.00062
 Identities = 39/168 (23%), Positives = 84/168 (50%)

Query:     9 DEGWDIIQKWITKLRRISEGLPEPPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYNKCKQ 68
             DE W  +++ +  ++  S  +    +N+++   LY +V + C     +  SA LY + +Q
Sbjct:   283 DETWQKLKEAVEAIQN-STSIK---YNLEE---LYQAVENLC----SYKISANLYKQLRQ 331

Query:    69 DLEEYMSSTVFPSLSEKHDEHL-LRELVKRFANHKVMVKWLALCFNYLERYYIRQRA-LP 126
               E+++ + +     +  D  L L+++ K + NH   +  +   F +L+R Y+ Q + LP
Sbjct:   332 ICEDHIKAQIHQFREDSLDSVLFLKKIDKCWQNHCRQMIMIRSIFLFLDRTYVLQNSMLP 391

Query:   127 TISEIGLTCFR-DLVFDA-LKHKAKDVVITLXXXXXXXXXXXXALLKN 172
             +I ++GL  FR  ++ D  +++K  D ++ L            +LL++
Sbjct:   392 SIWDMGLELFRAHIISDQKVQNKTIDGILLLIERERNGEAIDRSLLRS 439

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0031461 "cullin-RING ubiquitin ligase complex" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

UNIPROTKB|H7C1L6 CUL3 "Cullin-3" [Homo sapiens (taxid:9606)]

 Score = 100 (40.3 bits), Expect = 0.00075, P = 0.00075
 Identities = 31/144 (21%), Positives = 69/144 (47%)

Query:     3 HKEIDMDEG-----WDIIQKWITKL-RRISEGLPEPPFNVDDYVMLYSSVYSTCIQGPHH 56
             + E+ MDE      WD+++  I ++ R+ + GL         +  LY + Y+  +    H
Sbjct:    41 YTEMTMDEKYVNSIWDLLKNAIQEIQRKNNSGL--------SFEELYRNAYTMVL----H 88

Query:    57 GYSAQLYNKCKQDLEEYMSSTVFPSLSEKHDEHLLRELVKRFANHKVMVKWLALCFNYLE 116
              +  +LY   ++ + E++ + V   +    + + L+ L + + +H+  +  +     Y++
Sbjct:    89 KHGEKLYTGLREVVTEHLINKVREDVLNSLNNNFLQTLNQAWNDHQTAMVMIRDILMYMD 148

Query:   117 RYYIRQRALPTISEIGLTCFRDLV 140
             R Y++Q  +  +  +GL  FRD V
Sbjct:   149 RVYVQQNNVENVYNLGLIIFRDQV 172


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.138   0.430    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      172       160   0.00097  106 3  11 22  0.47    31
                                                     30  0.43    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  609 (65 KB)
  Total size of DFA:  172 KB (2100 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.08u 0.12s 18.20t   Elapsed:  00:00:00
  Total cpu time:  18.08u 0.12s 18.20t   Elapsed:  00:00:00
  Start:  Fri May 10 11:06:03 2013   End:  Fri May 10 11:06:03 2013

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0031461 "cullin-RING ubiquitin ligase complex" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	cul1	SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (744 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00016431001	SubName- Full=Putative uncharacterized protein (Chromosome chr11 scaffold_13, whole genome shot [...] (120 aa)					•	•	•		0.884
	GSVIVG00026979001	RecName- Full=Ubiquitin carrier protein; EC=6.3.2.-; (148 aa)							•		0.483
	GSVIVG00024047001	RecName- Full=Ubiquitin-activating enzyme E1;; Activates ubiquitin by first adenylating its C-t [...] (1089 aa)							•		0.483
	GSVIVG00023383001	RecName- Full=Ubiquitin carrier protein; EC=6.3.2.-; (148 aa)							•		0.483
	GSVIVG00035351001	SubName- Full=Chromosome undetermined scaffold_77, whole genome shotgun sequence; (1219 aa)					•		•		0.463
	GSVIVG00034065001	SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (122 aa)					•		•		0.426
	GSVIVG00036331001	SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (329 aa)					•		•		0.406

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	172
pfam00888	603	pfam00888, Cullin, Cullin family	8e-23
COG5647	773	COG5647, COG5647, Cullin, a subunit of E3 ubiquiti	4e-06

>gnl|CDD|216175 pfam00888, Cullin, Cullin family

 Score = 93.8 bits (233), Expect = 8e-23
 Identities = 55/152 (36%), Positives = 89/152 (58%), Gaps = 5/152 (3%)

Query: 21  KLRRISEGLPEPPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYNKCKQDLEEYMSSTVFP 80
           KL    + +    F+  DY+ LY++VY+       H    +LYN+ K+ LEEY+++ +  
Sbjct: 3   KLLDAIDQILLKSFSSLDYMELYTAVYN----YVPHKLGEKLYNRLKEYLEEYVAA-LLK 57

Query: 81  SLSEKHDEHLLRELVKRFANHKVMVKWLALCFNYLERYYIRQRALPTISEIGLTCFRDLV 140
           S+ E  DE LL+   K +      +K L   F YL RYY++++ L  + E+GL  +R+ +
Sbjct: 58  SILENDDEVLLKTYYKEWNKFSTSMKILNNIFMYLNRYYVKRKNLDGVYELGLDIWRESL 117

Query: 141 FDALKHKAKDVVITLIDREREGEEIDRALLKN 172
           FD +K K  D ++ LI++ER GE IDR+L+KN
Sbjct: 118 FDPIKDKLIDALLRLIEKERLGEIIDRSLIKN 149

Length = 603

>gnl|CDD|227934 COG5647, COG5647, Cullin, a subunit of E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

 Score = 45.6 bits (108), Expect = 4e-06
 Identities = 31/191 (16%), Positives = 70/191 (36%), Gaps = 32/191 (16%)

Query: 2   GHKEIDMDEGWDIIQKWITKL-RRISEGLPEPPFNVDDYVMLYSSVYSTC---------- 50
              E D +  W+ I++ I ++  R+ + +      +   + +Y+ +Y+ C          
Sbjct: 14  TLSEEDFESTWEFIERAIGQIFERLYDSM-----AILSLMEVYTKIYNYCTNKTRSLESD 68

Query: 51  ----IQGPHHGYSAQLYNKCKQDLEEYMSSTVFPSLSEKHDEH--LLRELVKRFANHKVM 104
               I   + G  ++L  K     + Y+      +     +     L ELVK +      
Sbjct: 69  LRWKIDFIYLG--SRLIQKLVDYAKNYIEEY---NRGRSQENMEEFLDELVKFWNRFTKG 123

Query: 105 VKWLALCFNYLERYYIRQRALPT--ISEIGLTCFRD---LVFDALKHKAKDVVITLIDRE 159
              +   F Y++R Y+++       + E+   C        F  +     + ++  ++R 
Sbjct: 124 ATMINHLFLYMDRVYLKKARYDKTLVFEVYSLCLVKEKIESFRLIVDSLINPLLYYVERY 183

Query: 160 REGEEIDRALL 170
           R  + IDR  +
Sbjct: 184 RALQSIDRKYI 194

Length = 773

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	172
KOG2166	725	consensus Cullins [Cell cycle control, cell divisi	99.92
PF00888	588	Cullin: Cullin family; InterPro: IPR001373 Cullins	99.91
KOG2284	728	consensus E3 ubiquitin ligase, Cullin 2 component	99.87
COG5647	773	Cullin, a subunit of E3 ubiquitin ligase [Posttran	99.87
KOG2285	777	consensus E3 ubiquitin ligase, Cullin 1 component	99.6
KOG2167	661	consensus Cullins [Cell cycle control, cell divisi	99.43
PF08539	158	HbrB: HbrB-like; InterPro: IPR013745 HbrB is invol	98.43

>KOG2166 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]

Probab=99.92  E-value=6.9e-25  Score=188.35  Aligned_cols=172  Identities=51%  Similarity=0.921  Sum_probs=151.1

Q ss_pred             CCCCcccHHhhHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHhhcccc
Q 048133            1 MGHKEIDMDEGWDIIQKWITKLRRISEGLPEPPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYNKCKQDLEEYMSSTVFP   80 (172)
Q Consensus         1 ~~~~~~~f~~~W~~l~~~i~~i~~~l~~~~~~~~~~~~~~~lY~~vy~lc~~~~~~~~~~~LY~~l~~~i~~~l~~~~~~   80 (172)
                      |++.+++++..|+.+++++..+....++-+.+.++..+++.+|+++|++|+++++.+.+++||+++++++.+|+.+.+.+
T Consensus         3 ~~~~~~~~~~~w~~~~~~~~~l~~~~~~~s~~~~~~~~~~~ly~t~~~~~~~k~~~~~~~~lY~~l~~~~~~yl~~~~~~   82 (725)
T KOG2166|consen    3 MAPKEIDLEVGWSYIETGITKLKRIIEGLSEPAFEQYQFMYLYTTIYNMCLQKPPHDYSQQLYDKYREVIEEYLIQTVLP   82 (725)
T ss_pred             ccccccchhccHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence            56788999999999999999999887643334588899999999999999999665555999999999999999998766


Q ss_pred             ccccccchHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhccc-CCccHHHHH-HHHHHHHHHH-HHHHHHHHHHHHHHH
Q 048133           81 SLSEKHDEHLLRELVKRFANHKVMVKWLALCFNYLERYYIRQR-ALPTISEIG-LTCFRDLVFD-ALKHKAKDVVITLID  157 (172)
Q Consensus        81 ~l~~~~~~~lL~~~~~~W~~y~~~~~~l~~if~YLdr~yi~~~-~~~~i~~l~-l~~f~~~v~~-~~~~~l~~~il~~I~  157 (172)
                      .+..+.++.+|+.++..|.+|+.++.+++++|+||||+|+.+. +..++++++ +.+|+..+.. ++++++.++++.+|.
T Consensus        83 ~~~~~~~~~~l~~~~~~W~~~~~~~~~~~~i~~YldR~~v~~~~~~~~v~~~~~l~l~r~~v~~~~~~~~~~~all~lI~  162 (725)
T KOG2166|consen   83 ALREKHDEYMLRELAKRWNNHKVLVRWLSDFFMYLDRYYVAQSRRKLPTLNEVGLTCFRDLVYKFEMQSEAIDALLALIH  162 (725)
T ss_pred             HHHhcCcHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhcCCCCcccceeeEEeehHHHHHHHHHHHHHHHHHHHH
Confidence            6666677889999999999999999999999999999999976 666666666 8888877777 699999999999999


Q ss_pred             HHhCCCccchhhhcC
Q 048133          158 REREGEEIDRALLKN  172 (172)
Q Consensus       158 ~eR~g~~id~~lik~  172 (172)
                      .+|.|+.||+.+|++
T Consensus       163 ~eR~ge~in~~~i~~  177 (725)
T KOG2166|consen  163 KEREGEQIDRELIRN  177 (725)
T ss_pred             hhcccccccHHHHhh
Confidence            999999999999874

>PF00888 Cullin: Cullin family; InterPro: IPR001373 Cullins are a family of hydrophobic proteins that act as scaffolds for ubiquitin ligases (E3)

Probab=99.91  E-value=4.5e-24  Score=182.13  Aligned_cols=137  Identities=38%  Similarity=0.712  Sum_probs=126.5

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHhhccccccccccchHHH
Q 048133           12 WDIIQKWITKLRRISEGLPEPPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYNKCKQDLEEYMSSTVFPSLSEKHDEHLL   91 (172)
Q Consensus        12 W~~l~~~i~~i~~~l~~~~~~~~~~~~~~~lY~~vy~lc~~~~~~~~~~~LY~~l~~~i~~~l~~~~~~~l~~~~~~~lL   91 (172)
                      |+.|++||+.|+.       ..++..+||.+|+.||++|..+    +|+.||+.+++.+..|+.+++ +.+.+.+++++|
T Consensus         1 W~~l~~~i~~i~~-------~~~~~~~~~~lY~~vy~l~~~~----~~~~LY~~l~~~i~~~~~~~~-~~l~~~~~~~~l   68 (588)
T PF00888_consen    1 WEILEEAIDQIFK-------KSISKLSYMELYTCVYNLCDNK----YGEQLYDKLKEFISEYLKNII-ESLLSSSDEDLL   68 (588)
T ss_dssp             HHHHHHHHHHHHT-------T-GCCSHHHHHHHHHHHHHHTT----THHHHHHHHHHHHHHHHHHHH-HHHCTTTTCHHH
T ss_pred             ChHHHHHHHHHHc-------CCCChhHHHHHHHHHHhhcCCc----ccHHHHHHHHHHHHHHHHHHH-HHHHhcChhHHH
Confidence            9999999999983       3577889999999999999987    899999999999999999975 666666778999


Q ss_pred             HHHHHHHHhHHHHHHHHHHHhhhhhhhhhcccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccchhhhc
Q 048133           92 RELVKRFANHKVMVKWLALCFNYLERYYIRQRALPTISEIGLTCFRDLVFDALKHKAKDVVITLIDREREGEEIDRALLK  171 (172)
Q Consensus        92 ~~~~~~W~~y~~~~~~l~~if~YLdr~yi~~~~~~~i~~l~l~~f~~~v~~~~~~~l~~~il~~I~~eR~g~~id~~lik  171 (172)
                      ..|...|.+|+.++++++++|+||||+|+.++           +|++.|+.++++++..+++++|.++|.|+.+|+.+|+
T Consensus        69 ~~~~~~w~~~~~~~~~i~~if~yLdr~yv~~~-----------~f~~~v~~~~~~~i~~~ll~~I~~~R~g~~~~~~~l~  137 (588)
T PF00888_consen   69 EEYVQEWEKYKKAIKYISDIFSYLDRNYVKRN-----------LFREQVFKPLKDKIINALLNLIKNEREGEKIDRSLLK  137 (588)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTHHHHHTSTTTT-----------HHHHHTTTSHHHHHHHHHHHHHHHHHTTTTSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh-----------hHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHH
Confidence            99999999999999999999999999999876           9999999999999999999999999999999988876

Cullins are found throughout eukaryotes. Humans express seven cullins (Cul1, 2, 3, 4A, 4B, 5 and 7), each forming part of a multi-subunit ubiquitin complex. Cullin-RING ubiquitin ligases (CRLs), such as Cul1 (SCF) [], play an essential role in targeting proteins for ubiquitin-mediated destruction; as such, they are diverse in terms of composition and function, regulating many different processes from glucose sensing and DNA replication to limb patterning and circadian rhythms. The catalytic core of CRLs consists of a RING protein and a cullin family member. For Cul1, the C-terminal cullin-homology domain binds the RING protein. The RING protein appears to function as a docking site for ubiquitin-conjugating enzymes (E2s). Other proteins contain a cullin-homology domain, such as the APC2 subunit of the anaphase-promoting complex/cyclosome and the p53 cytoplasmic anchor PARC; both APC2 and PARC have ubiquitin ligase activity. The N-terminal region of cullins is more variable, and is used to interact with specific adaptor proteins [, , ]. This entry represents the N-terminal region of cullin proteins, which consists of several domains, including cullin repeat domain, a 4-helical bundle domain, an alpha+beta domain, and a winged helix-like domain.; GO: 0031625 ubiquitin protein ligase binding, 0006511 ubiquitin-dependent protein catabolic process, 0031461 cullin-RING ubiquitin ligase complex; PDB: 2WZK_A 3DQV_D 3DPL_C 3RTR_G 3TDU_D 1LDJ_A 3TDZ_D 1LDK_A 1U6G_A 4A0K_A ....

>KOG2284 consensus E3 ubiquitin ligase, Cullin 2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.87  E-value=1.2e-21  Score=156.40  Aligned_cols=157  Identities=19%  Similarity=0.362  Sum_probs=137.9

Q ss_pred             CCCcccHHhhHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHhhccccc
Q 048133            2 GHKEIDMDEGWDIIQKWITKLRRISEGLPEPPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYNKCKQDLEEYMSSTVFPS   81 (172)
Q Consensus         2 ~~~~~~f~~~W~~l~~~i~~i~~~l~~~~~~~~~~~~~~~lY~~vy~lc~~~~~~~~~~~LY~~l~~~i~~~l~~~~~~~   81 (172)
                      .|+..+|++.|..|.+.|..|...      .++.+..|..-|+.||.+|.+-| .+.||.||+..+.++++|++..++..
T Consensus         5 kp~vv~fd~~w~~l~~si~~ii~l------~~i~~~~w~~~fsdvy~icvs~p-~pl~erly~e~k~~i~~hvrq~~~~~   77 (728)
T KOG2284|consen    5 KPKVVEFDKVWVQLRPSIIDIINL------RPITNVQWHHKFSDVYDICVSIP-TPLSERLYNEVKACIQEHVRQKRQDI   77 (728)
T ss_pred             CceeeeHHHHHHHHHHHHHHHHhc------cchhccccccchhhHHHHHHhCC-CchhHHHHHHHHHHHHHHHHHHhhhh
Confidence            688999999999999999998763      47788899999999999999864 46999999999999999999765443


Q ss_pred             cccccchHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhcccC------------------CccHHHHHHHHHHHHHHHH
Q 048133           82 LSEKHDEHLLRELVKRFANHKVMVKWLALCFNYLERYYIRQRA------------------LPTISEIGLTCFRDLVFDA  143 (172)
Q Consensus        82 l~~~~~~~lL~~~~~~W~~y~~~~~~l~~if~YLdr~yi~~~~------------------~~~i~~l~l~~f~~~v~~~  143 (172)
                      ... +.+.+|..|.+.|+.|..+..++..+|.|||..|++++.                  ...|..+|+++|++.+..+
T Consensus        78 v~~-~p~~~l~~yh~~w~~~~~ga~~~~~l~~yln~qfvk~~~~t~~d~~~~y~~~~~~~~~~eig~lal~~w~~~~v~~  156 (728)
T KOG2284|consen   78 VDV-DPDLLLQEYHKMWRVFHEGAIFIHRLFGYLNKQFVKQKRCTDLDNFAQYAAFLQIPDVKEIGCLALEIWKEDLVKT  156 (728)
T ss_pred             hcC-CHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhhcccchhhhhhhcchhcCCcHHHHhHHHHHHHHHHHHHH
Confidence            333 335699999999999999999999999999999999862                  3457888999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhCCCccc
Q 048133          144 LKHKAKDVVITLIDREREGEEID  166 (172)
Q Consensus       144 ~~~~l~~~il~~I~~eR~g~~id  166 (172)
                      +...|+.-++..|..+|.|+..+
T Consensus       157 i~~~lv~~ll~~i~ndr~g~~p~  179 (728)
T KOG2284|consen  157 ILPQLVKLLLIAIDNDRKGNFPH  179 (728)
T ss_pred             HHHHHHHHHHHHhhcccCCCCcc
Confidence            99999999999999999998654

>COG5647 Cullin, a subunit of E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.87  E-value=2.9e-21  Score=162.11  Aligned_cols=162  Identities=18%  Similarity=0.302  Sum_probs=141.0

Q ss_pred             CcccHHhhHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHhcCCCC------------CchHHHHHHHHHHHH
Q 048133            4 KEIDMDEGWDIIQKWITKLRRISEGLPEPPFNVDDYVMLYSSVYSTCIQGPHH------------GYSAQLYNKCKQDLE   71 (172)
Q Consensus         4 ~~~~f~~~W~~l~~~i~~i~~~l~~~~~~~~~~~~~~~lY~~vy~lc~~~~~~------------~~~~~LY~~l~~~i~   71 (172)
                      +..||++.|..++.||++|+..+.+    .+...++|++|+.+|+.|+...++            ..++.+|++++...+
T Consensus        16 ~~~df~~~W~~i~~~I~~I~~~l~~----~m~~l~~~evY~~IYn~c~n~tr~~~~~~~~~~~~~~~~s~li~~L~~~~k   91 (773)
T COG5647          16 SEEDFESTWEFIERAIGQIFERLYD----SMAILSLMEVYTKIYNYCTNKTRSLESDLRWKIDFIYLGSRLIQKLVDYAK   91 (773)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHh----hhhhhhHHHHHHHHHHHHhcccccchhcccchhHHHHHHHHHHHHHHHHHH
Confidence            6689999999999999999977643    456678999999999999998763            158899999999999


Q ss_pred             HHHhhccccccccccchHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhc-----ccCCccHHHHHHHHHHHHHHHHHHH
Q 048133           72 EYMSSTVFPSLSEKHDEHLLRELVKRFANHKVMVKWLALCFNYLERYYIR-----QRALPTISEIGLTCFRDLVFDALKH  146 (172)
Q Consensus        72 ~~l~~~~~~~l~~~~~~~lL~~~~~~W~~y~~~~~~l~~if~YLdr~yi~-----~~~~~~i~~l~l~~f~~~v~~~~~~  146 (172)
                      +++.+.-. .......+++|..+++.|++|+.++.+++.+|.||||.|++     +.+...++.+++..|+..+|.++.+
T Consensus        92 ~~i~~~~~-~~s~~~~~~fl~~~v~~W~~~~~~~~~i~~~f~Ymdr~~~k~~~~~~~~~~E~~slcl~~~~~~~f~~i~~  170 (773)
T COG5647          92 NYIEEYNR-GRSQENMEEFLDELVKFWNRFTKGATMINHLFLYMDRVYLKKARYDKTLVFEVYSLCLVKEKIESFRLIVD  170 (773)
T ss_pred             HHHHHhcc-cccchhHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHhhhhccCCCccceeeehhhhhHHHHHHHHhhhH
Confidence            99988642 22222347899999999999999999999999999999999     2345678899999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCccchhhh
Q 048133          147 KAKDVVITLIDREREGEEIDRALL  170 (172)
Q Consensus       147 ~l~~~il~~I~~eR~g~~id~~li  170 (172)
                      .+++.+|..+++.|.|+.||+..+
T Consensus       171 ~lin~LL~~~~~~r~~~~id~~yi  194 (773)
T COG5647         171 SLINPLLYYVERYRALQSIDRKYI  194 (773)
T ss_pred             HHHHHHHHHHHHHHhcCccCchHH
Confidence            999999999999999999998765

>KOG2285 consensus E3 ubiquitin ligase, Cullin 1 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.60  E-value=9.4e-15  Score=118.29  Aligned_cols=158  Identities=19%  Similarity=0.336  Sum_probs=136.7

Q ss_pred             CcccHHhhHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHhhccccccc
Q 048133            4 KEIDMDEGWDIIQKWITKLRRISEGLPEPPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYNKCKQDLEEYMSSTVFPSLS   83 (172)
Q Consensus         4 ~~~~f~~~W~~l~~~i~~i~~~l~~~~~~~~~~~~~~~lY~~vy~lc~~~~~~~~~~~LY~~l~~~i~~~l~~~~~~~l~   83 (172)
                      +..-|++.|+..++.+-+++.      +..+++..|..||..||..|.+...  ...++|+.++..|.+++.+. +..+.
T Consensus         9 ~r~qFee~W~~~rpIVlkLLr------Q~sVt~~~WqDLF~~Vh~vclWddk--GpaKI~d~L~~dI~efi~qA-q~rv~   79 (777)
T KOG2285|consen    9 DRDQFEEEWSKARPIVLKLLR------QKSVTPAAWQDLFYHVHKVCLWDDK--GPAKIRDILTRDINEFIHQA-QKRVR   79 (777)
T ss_pred             chhhhhhhccccchHHHHHHh------hccCCHHHHHHHHhhheeeeeecCC--CcHHHHHHHHHHHHHHHHHH-HHHHH
Confidence            456899999999999999886      2568999999999999999999753  45899999999999998875 34444


Q ss_pred             cc-cchHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhccc--------CCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048133           84 EK-HDEHLLRELVKRFANHKVMVKWLALCFNYLERYYIRQR--------ALPTISEIGLTCFRDLVFDALKHKAKDVVIT  154 (172)
Q Consensus        84 ~~-~~~~lL~~~~~~W~~y~~~~~~l~~if~YLdr~yi~~~--------~~~~i~~l~l~~f~~~v~~~~~~~l~~~il~  154 (172)
                      +. .+..+|..|..+|..|...+.++.-.|.-|+.+-..+.        +-.++..+.+..|.+++|..++.+|....+.
T Consensus        80 s~q~d~aLL~~YIvEWrkFftQ~niLPlPF~qle~s~~gk~gs~kk~~~eds~vRklMLd~WNe~IF~nIk~rLq~sAmk  159 (777)
T KOG2285|consen   80 SLQTDGALLIGYIVEWRKFFTQANILPLPFKQLEESQAGKRGSVKKTPTEDSSVRKLMLDKWNEIIFMNIKERLQVSAMK  159 (777)
T ss_pred             hhccccHHHHHHHHHHHHHHHhcCcCCCcHHHHHHHhhcccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            43 45689999999999999999999999999999865553        2357999999999999999999999999999


Q ss_pred             HHHHHhCCCccchhhh
Q 048133          155 LIDREREGEEIDRALL  170 (172)
Q Consensus       155 ~I~~eR~g~~id~~li  170 (172)
                      ++..||+|+.+|.+++
T Consensus       160 lVhaER~G~a~DaQlV  175 (777)
T KOG2285|consen  160 LVHAERDGNAIDAQLV  175 (777)
T ss_pred             HHHHHhccchhhhhhh
Confidence            9999999999998764

>KOG2167 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]

Probab=99.43  E-value=4.2e-13  Score=111.35  Aligned_cols=110  Identities=25%  Similarity=0.364  Sum_probs=96.7

Q ss_pred             HHHHHHHHHHHHHhhcccccccc-ccchHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhcc-c-CCccHHHHHHHHHHH
Q 048133           62 LYNKCKQDLEEYMSSTVFPSLSE-KHDEHLLRELVKRFANHKVMVKWLALCFNYLERYYIRQ-R-ALPTISEIGLTCFRD  138 (172)
Q Consensus        62 LY~~l~~~i~~~l~~~~~~~l~~-~~~~~lL~~~~~~W~~y~~~~~~l~~if~YLdr~yi~~-~-~~~~i~~l~l~~f~~  138 (172)
                      ||+.+++.++.|++..+.+.-.+ .+...+|+.+.+.|..|+..+..++++|.||||.|+.. + ..+|+|++|+.+|+.
T Consensus         2 ly~~l~~~~~~~~~~~~~q~~~~~~d~~~~l~k~~~~w~~~~~~~~mIRsIfl~lDrt~~~qsnp~v~siWem~l~LFR~   81 (661)
T KOG2167|consen    2 LYKQLRQICEQHIKAQIEQLRGDELDSVLFLEKIGRCWQPDPKQMIMIRSIFLHLDRTYVLQSNPYVLSIWEMGLQLFRA   81 (661)
T ss_pred             hHHHHHHHHHHHHHHHHhhCcCCcchHHHHHHHHhhHhhhhHHhhhhhhheeeecCCcccccCCCCcCCHHHhhHHHHHH
Confidence            79999999999999765322122 23367999999999999999999999999999999998 4 378999999999999


Q ss_pred             HHHH----HHHHHHHHHHHHHHHHHhCCCccchhhhc
Q 048133          139 LVFD----ALKHKAKDVVITLIDREREGEEIDRALLK  171 (172)
Q Consensus       139 ~v~~----~~~~~l~~~il~~I~~eR~g~~id~~lik  171 (172)
                      +++.    .+..++.++++..++++|.|+++|+.+|+
T Consensus        82 ~f~~~~~~~vqs~~~N~ll~s~er~rsgeAvdrslLr  118 (661)
T KOG2167|consen   82 HFSQEPQPFVQSKTFNGLLKSIERERSGEAVDRSLLR  118 (661)
T ss_pred             HhhccCCchhhccchHHHHHHHHHHhhcchhhHHHHH
Confidence            9997    77899999999999999999999999886

>PF08539 HbrB: HbrB-like; InterPro: IPR013745 HbrB is involved in hyphal growth and polarity []

Probab=98.43  E-value=1.1e-05  Score=58.15  Aligned_cols=134  Identities=19%  Similarity=0.222  Sum_probs=97.4

Q ss_pred             cccHHhhHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHH---HHHhcCCCCCchHHHHHHHHHHHHHHHhhccccc
Q 048133            5 EIDMDEGWDIIQKWITKLRRISEGLPEPPFNVDDYVMLYSSVY---STCIQGPHHGYSAQLYNKCKQDLEEYMSSTVFPS   81 (172)
Q Consensus         5 ~~~f~~~W~~l~~~i~~i~~~l~~~~~~~~~~~~~~~lY~~vy---~lc~~~~~~~~~~~LY~~l~~~i~~~l~~~~~~~   81 (172)
                      +...++.|+.+..++-.+|+   |+. ...+   .+.+-..|-   +.|.++.   ....+-+.+++.+..-+..+ ...
T Consensus         2 ~~~~~~~W~~~~~~vl~lF~---g~~-l~~~---iEdlN~lv~~~i~~~~~~~---~~~~~~~dl~elL~tg~~~L-~~~   70 (158)
T PF08539_consen    2 NMSSDDAWNSLCAKVLPLFQ---GER-LRLP---IEDLNELVRFHIKLCIQSF---PPSYFLEDLEELLTTGMYIL-ENQ   70 (158)
T ss_pred             CCchhhhHHHHHHHHHHHHc---CCC-CCcC---HHHHHHHHHHHHHHhhccc---chHHHHHHHHHHHHHHHHHH-HHH
Confidence            45678999999999999886   432 2233   556666655   4555543   23456667777777766654 355


Q ss_pred             cccccchHHHHHHHHHHHh-HHHHHHHHHHHhhhhhhhhhcc-----------------cCCccHHHHHHHHHHHHHHHH
Q 048133           82 LSEKHDEHLLRELVKRFAN-HKVMVKWLALCFNYLERYYIRQ-----------------RALPTISEIGLTCFRDLVFDA  143 (172)
Q Consensus        82 l~~~~~~~lL~~~~~~W~~-y~~~~~~l~~if~YLdr~yi~~-----------------~~~~~i~~l~l~~f~~~v~~~  143 (172)
                      +....++.+|..++..|.- |..-+-++..+|.-|++.+-..                 .+..+|..+++..||+.|+-|
T Consensus        71 l~~~~~~~~l~rL~eiW~~Ff~~VlP~lqavFlPLq~~f~~~~~~~~~~~~~~~~~~~~~~~l~Vr~l~L~~FRD~IvLP  150 (158)
T PF08539_consen   71 LNEVPDNRLLKRLVEIWQFFFTQVLPYLQAVFLPLQLEFQGNGKYMNPSEAREFWGNKAGSELDVRRLLLIAFRDSIVLP  150 (158)
T ss_pred             HhhcchhHHHHHHHHHHHHHhcchHHHHHHHHhhhHHhhcccCccCChhhhhccccccCCCCCcHHHHHHHHHHHHhhhc
Confidence            6666778999999999999 5566789999999999654322                 134789999999999999988


Q ss_pred             HHHHHH
Q 048133          144 LKHKAK  149 (172)
Q Consensus       144 ~~~~l~  149 (172)
                      ..+++.
T Consensus       151 ~y~~l~  156 (158)
T PF08539_consen  151 YYQRLK  156 (158)
T ss_pred             chHhhh
Confidence            777654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	172
4apf_B	388	Crystal Structure Of The Human Klhl11-cul3 Complex		2e-04
4ap2_B	410	Crystal Structure Of The Human Klhl11-cul3 Complex		2e-04
4eoz_B	364	Crystal Structure Of The Spop Btb Domain Complexed		4e-04

>pdb|4APF|B Chain B, Crystal Structure Of The Human Klhl11-cul3 Complex At 3.1a Resolution Length = 388

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/130 (20%), Positives = 63/130 (48%), Gaps = 13/130 (10%)
Query: 12  WDIIQKWITKL-RRISEGLPEPPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYNKCKQDL 70
           WD+++  I ++ R+ + GL         +  LY + Y+  +    H +  +LY   ++ +
Sbjct: 12  WDLLKNAIQEIQRKNNSGLS--------FEELYRNAYTMVL----HKHGEKLYTGLREVV 59
Query: 71  EEYMSSTVFPSLSEKHDEHLLRELVKRFANHKVMVKWLALCFNYLERYYIRQRALPTISE 130
            E++ + V   +    + + L+ L + + +H+  +  +     Y++R Y++Q  +  +  
Sbjct: 60  TEHLINKVREDVLNSLNNNFLQTLNQAWNDHQTAMVMIRDILMYMDRVYVQQNNVENVYN 119
Query: 131 IGLTCFRDLV 140
           +GL  FRD V
Sbjct: 120 LGLIIFRDQV 129

>pdb|4AP2|B Chain B, Crystal Structure Of The Human Klhl11-cul3 Complex At 2.8a Resolution Length = 410

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/130 (20%), Positives = 63/130 (48%), Gaps = 13/130 (10%)
Query: 12  WDIIQKWITKL-RRISEGLPEPPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYNKCKQDL 70
           WD+++  I ++ R+ + GL         +  LY + Y+  +    H +  +LY   ++ +
Sbjct: 34  WDLLKNAIQEIQRKNNSGLS--------FEELYRNAYTMVL----HKHGEKLYTGLREVV 81
Query: 71  EEYMSSTVFPSLSEKHDEHLLRELVKRFANHKVMVKWLALCFNYLERYYIRQRALPTISE 130
            E++ + V   +    + + L+ L + + +H+  +  +     Y++R Y++Q  +  +  
Sbjct: 82  TEHLINKVREDVLNSLNNNFLQTLNQAWNDHQTAMVMIRDILMYMDRVYVQQNNVENVYN 141
Query: 131 IGLTCFRDLV 140
           +GL  FRD V
Sbjct: 142 LGLIIFRDQV 151

>pdb|4EOZ|B Chain B, Crystal Structure Of The Spop Btb Domain Complexed With The Cul3 N- Terminal Domain Length = 364

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/130 (20%), Positives = 61/130 (46%), Gaps = 13/130 (10%)
Query: 12  WDIIQKWITKL-RRISEGLPEPPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYNKCKQDL 70
           WD+++  I ++ R+ + GL         +  LY + Y+  +    H +  +LY   ++ +
Sbjct: 17  WDLLKNAIQEIQRKNNSGLS--------FEELYRNAYTXVL----HKHGEKLYTGLREVV 64
Query: 71  EEYMSSTVFPSLSEKHDEHLLRELVKRFANHKVMVKWLALCFNYLERYYIRQRALPTISE 130
            E++ + V   +    + + L+ L + + +H+     +     Y +R Y++Q  +  +  
Sbjct: 65  TEHLINKVREDVLNSLNNNFLQTLNQAWNDHQTAXVXIRDILXYXDRVYVQQNNVENVYN 124
Query: 131 IGLTCFRDLV 140
           +GL  FRD V
Sbjct: 125 LGLIIFRDQV 134

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	172
2hye_C	759	Cullin-4A, CUL-4A; beta propeller, ring finger, zi	4e-28
1ldj_A	760	Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc	4e-27
2wzk_A	391	Cullin-5, CUL-5; UBL conjugation pathway, HIV, pho	3e-26
4eoz_B	364	Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, pro	7e-26
4ap2_B	410	Cullin-3, CUL-3; ubiquitination, E3 ligase, cell c	8e-25
4a64_A	354	Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo	1e-22

>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E* Length = 759

 Score =  108 bits (271), Expect = 4e-28
 Identities = 40/172 (23%), Positives = 81/172 (47%), Gaps = 15/172 (8%)

Query: 5   EIDMDEGWDIIQKWITKLRRISEGLPEPPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYN 64
           +    + W  + + +   R +            +   LY +V + C     H  S  LY 
Sbjct: 56  DNYTQDTWRKLHEAV---RAVQSSTSIRY----NLEELYQAVENLCS----HKVSPMLYK 104

Query: 65  KCKQDLEEYMSSTVFPSLSEKHD-EHLLRELVKRFANHKVMVKWLALCFNYLERYYI-RQ 122
           + +Q  E+++ + + P   +  D    L+++   + +H   +  +   F +L+R Y+ + 
Sbjct: 105 QLRQACEDHVQAQILPFREDSLDSVLFLKKINTCWQDHCRQMIMIRSIFLFLDRTYVLQN 164

Query: 123 RALPTISEIGLTCFRDLVF--DALKHKAKDVVITLIDREREGEEIDRALLKN 172
             LP+I ++GL  FR  +     ++ K  D ++ LI+RER GE +DR+LL++
Sbjct: 165 STLPSIWDMGLELFRTHIISDKMVQSKTIDGILLLIERERSGEAVDRSLLRS 216

>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A Length = 760

 Score =  105 bits (263), Expect = 4e-27
 Identities = 40/193 (20%), Positives = 81/193 (41%), Gaps = 36/193 (18%)

Query: 9   DEGWDIIQKWITKLRRISEGLPEPPFNVDDYVMLYSSVYSTC------------------ 50
           D+ WD ++  I ++                Y+ LY+ VY+ C                  
Sbjct: 2   DQIWDDLRAGIQQV------YTRQSMAKSRYMELYTHVYNYCTSVHQSNQARGAGVPPSK 55

Query: 51  -----IQGPHHGYSAQLYNKCKQDLEEYMSSTVFPSLSEKHDEHLLRELVKRFANHKVMV 105
                  G       +LY + K+ L+ Y+++ +     +  DE +L+   +++ +++   
Sbjct: 56  SKKGQTPGGAQFVGLELYKRLKEFLKNYLTN-LLKDGEDLMDESVLKFYTQQWEDYRFSS 114

Query: 106 KWLALCFNYLERYYIRQ------RALPTISEIGLTCFRDLVFDALKHKAKDVVITLIDRE 159
           K L     YL R+++R+      + +  I  + L  +RD +F  L  +  + V+ LI++E
Sbjct: 115 KVLNGICAYLNRHWVRRECDEGRKGIYEIYSLALVTWRDCLFRPLNKQVTNAVLKLIEKE 174

Query: 160 REGEEIDRALLKN 172
           R GE I+  L+  
Sbjct: 175 RNGETINTRLISG 187

>2wzk_A Cullin-5, CUL-5; UBL conjugation pathway, HIV, phosphoprotein, isopeptide bond, protein binding; 2.05A {Mus musculus} Length = 391

 Score =  101 bits (253), Expect = 3e-26
 Identities = 33/177 (18%), Positives = 72/177 (40%), Gaps = 16/177 (9%)

Query: 4   KEIDMDEGWDIIQKWITKLRRISEGLPEPPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLY 63
             +  ++ WD +   + KL      L +       +  L+S V++ C+       S++++
Sbjct: 11  GSLQFEDKWDFMHPIVLKL------LRQESVTKQQWFDLFSDVHAVCLW--DDKGSSKIH 62

Query: 64  NKCKQDLEEYMSSTVFPSLSEKHDEHLLRELVKRFANHKVMVKWLALCFNYLERYYIRQR 123
              K+D+ E++       LS + D  LL+  +  +         L   F  LE   + ++
Sbjct: 63  QALKEDILEFIKQAQARVLSHQDDTALLKAYIVEWRKFFTQCDILPKPFCQLEVTLLGKQ 122

Query: 124 --------ALPTISEIGLTCFRDLVFDALKHKAKDVVITLIDREREGEEIDRALLKN 172
                       + ++ L  + + +F  +K++ +D  + L+  ER GE  D  L+  
Sbjct: 123 SSNKKSNMEDSIVRKLMLDTWNESIFSNIKNRLQDSAMKLVHAERLGEAFDSQLVIG 179

>4eoz_B Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} PDB: 4apf_B Length = 364

 Score =  100 bits (249), Expect = 7e-26
 Identities = 35/174 (20%), Positives = 81/174 (46%), Gaps = 13/174 (7%)

Query: 1   MGHKEIDMDEGWDIIQKWITKLRRISEGLPEPPFNVDDYVMLYSSVYSTCIQGPHHGYSA 60
           M   E  ++  WD+++  I +   I             +  LY + Y+       H +  
Sbjct: 6   MTMDEKYVNSIWDLLKNAIQE---IQRKNNSG----LSFEELYRNAYTMV----LHKHGE 54

Query: 61  QLYNKCKQDLEEYMSSTVFPSLSEKHDEHLLRELVKRFANHKVMVKWLALCFNYLERYYI 120
           +LY   ++ + E++ + V   +    + + L+ L + + +H+  +  +     Y++R Y+
Sbjct: 55  KLYTGLREVVTEHLINKVREDVLNSLNNNFLQTLNQAWNDHQTAMVMIRDILMYMDRVYV 114

Query: 121 RQRALPTISEIGLTCFRD--LVFDALKHKAKDVVITLIDREREGEEIDRALLKN 172
           +Q  +  +  +GL  FRD  + +  ++   +  ++ +I RER+GE +DR  ++N
Sbjct: 115 QQNNVENVYNLGLIIFRDQVVRYGCIRDHLRQTLLDMIARERKGEVVDRGAIRN 168

>4ap2_B Cullin-3, CUL-3; ubiquitination, E3 ligase, cell cycle; HET: EDO; 2.80A {Homo sapiens} PDB: 4apf_B Length = 410

 Score = 98.0 bits (243), Expect = 8e-25
 Identities = 35/174 (20%), Positives = 82/174 (47%), Gaps = 13/174 (7%)

Query: 1   MGHKEIDMDEGWDIIQKWITKLRRISEGLPEPPFNVDDYVMLYSSVYSTCIQGPHHGYSA 60
           M   E  ++  WD+++  I +   I             +  LY + Y+  +    H +  
Sbjct: 23  MTMDEKYVNSIWDLLKNAIQE---IQRKNNSG----LSFEELYRNAYTMVL----HKHGE 71

Query: 61  QLYNKCKQDLEEYMSSTVFPSLSEKHDEHLLRELVKRFANHKVMVKWLALCFNYLERYYI 120
           +LY   ++ + E++ + V   +    + + L+ L + + +H+  +  +     Y++R Y+
Sbjct: 72  KLYTGLREVVTEHLINKVREDVLNSLNNNFLQTLNQAWNDHQTAMVMIRDILMYMDRVYV 131

Query: 121 RQRALPTISEIGLTCFRD--LVFDALKHKAKDVVITLIDREREGEEIDRALLKN 172
           +Q  +  +  +GL  FRD  + +  ++   +  ++ +I RER+GE +DR  ++N
Sbjct: 132 QQNNVENVYNLGLIIFRDQVVRYGCIRDHLRQTLLDMIARERKGEVVDRGAIRN 185

>4a64_A Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo sapiens} Length = 354

 Score = 91.4 bits (226), Expect = 1e-22
 Identities = 44/172 (25%), Positives = 84/172 (48%), Gaps = 15/172 (8%)

Query: 5   EIDMDEGWDIIQKWITKLRRISEGLPEPPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYN 64
           E   DE W  +++ +     I            +   LY +V + C     +  SA LY 
Sbjct: 7   ENYTDETWQKLKEAV---EAIQNSTSIK----YNLEELYQAVENLCS----YKISANLYK 55

Query: 65  KCKQDLEEYMSSTVFPSLSEKHDEH-LLRELVKRFANHKVMVKWLALCFNYLERYYI-RQ 122
           + +Q  E+++ + +     +  D    L+++ + + NH   +  +   F +L+R Y+ + 
Sbjct: 56  QLRQICEDHIKAQIHQFREDSLDSVLFLKKIDRCWQNHCRQMIMIRSIFLFLDRTYVLQN 115

Query: 123 RALPTISEIGLTCFRDLV--FDALKHKAKDVVITLIDREREGEEIDRALLKN 172
             LP+I ++GL  FR  +     +++K  D ++ LI+RER GE IDR+LL++
Sbjct: 116 SMLPSIWDMGLELFRAHIISDQKVQNKTIDGILLLIERERNGEAIDRSLLRS 167

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	172
4eoz_B	364	Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, pro	100.0
2wzk_A	391	Cullin-5, CUL-5; UBL conjugation pathway, HIV, pho	100.0
4ap2_B	410	Cullin-3, CUL-3; ubiquitination, E3 ligase, cell c	100.0
4a64_A	354	Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo	100.0
1ldj_A	760	Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc	100.0
2hye_C	759	Cullin-4A, CUL-4A; beta propeller, ring finger, zi	99.98

>4eoz_B Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} PDB: 4apf_B

Probab=100.00  E-value=7.6e-38  Score=252.20  Aligned_cols=161  Identities=22%  Similarity=0.456  Sum_probs=145.1

Q ss_pred             CCCCcccHHhhHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHhhcccc
Q 048133            1 MGHKEIDMDEGWDIIQKWITKLRRISEGLPEPPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYNKCKQDLEEYMSSTVFP   80 (172)
Q Consensus         1 ~~~~~~~f~~~W~~l~~~i~~i~~~l~~~~~~~~~~~~~~~lY~~vy~lc~~~~~~~~~~~LY~~l~~~i~~~l~~~~~~   80 (172)
                      |+..+.+|+++|+.|++||+.|+.   +++    +..+||++|+.||++|+++    +|+.||+++++.+++|+...+.+
T Consensus         6 ~~~~~~~~~~~W~~L~~ai~~I~~---~~~----~~~s~e~LY~~vy~lc~~k----~g~~LY~~l~~~~~~~l~~~v~~   74 (364)
T 4eoz_B            6 MTMDEKYVNSIWDLLKNAIQEIQR---KNN----SGLSFEELYRNAYTMVLHK----HGEKLYTGLREVVTEHLINKVRE   74 (364)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHHHHT---TCG----GGCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHHHHHTHHH
T ss_pred             CCCChhhHHHHHHHHHHHHHHHHh---cCC----CCCCHHHHHHHHHHHHhhh----CHHHHHHHHHHHHHHHHHHHHHH
Confidence            345667999999999999999986   232    3456999999999999987    89999999999999999944457


Q ss_pred             ccccccchHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhcccCCccHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Q 048133           81 SLSEKHDEHLLRELVKRFANHKVMVKWLALCFNYLERYYIRQRALPTISEIGLTCFRDLVFD--ALKHKAKDVVITLIDR  158 (172)
Q Consensus        81 ~l~~~~~~~lL~~~~~~W~~y~~~~~~l~~if~YLdr~yi~~~~~~~i~~l~l~~f~~~v~~--~~~~~l~~~il~~I~~  158 (172)
                      .+.+..++.||+.+.+.|++|+.++.+|+++|+||||+|+++++.++|+++|+.+|+++||.  +++++++++++++|++
T Consensus        75 ~~~~~~~~~~L~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~~~~I~~lgl~~fr~~v~~~~~i~~~l~~~ll~lI~~  154 (364)
T 4eoz_B           75 DVLNSLNNNFLQTLNQAWNDHQTAMVMIRDILMYMDRVYVQQNNVENVYNLGLIIFRDQVVRYGCIRDHLRQTLLDMIAR  154 (364)
T ss_dssp             HHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTGGGTCCCHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence            77776677899999999999999999999999999999999998999999999999999997  8999999999999999


Q ss_pred             HhCCCccchhhhcC
Q 048133          159 EREGEEIDRALLKN  172 (172)
Q Consensus       159 eR~g~~id~~lik~  172 (172)
                      +|+|+.||+.+||+
T Consensus       155 eR~Ge~id~~lik~  168 (364)
T 4eoz_B          155 ERKGEVVDRGAIRN  168 (364)
T ss_dssp             HHTTCCCCHHHHHH
T ss_pred             HhCCCCCCHHHHHH
Confidence            99999999999873

>2wzk_A Cullin-5, CUL-5; UBL conjugation pathway, HIV, phosphoprotein, isopeptide bond, protein binding; 2.05A {Mus musculus}

Probab=100.00  E-value=3.2e-37  Score=250.60  Aligned_cols=161  Identities=20%  Similarity=0.388  Sum_probs=143.0

Q ss_pred             CcccHHhhHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHhhccccccc
Q 048133            4 KEIDMDEGWDIIQKWITKLRRISEGLPEPPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYNKCKQDLEEYMSSTVFPSLS   83 (172)
Q Consensus         4 ~~~~f~~~W~~l~~~i~~i~~~l~~~~~~~~~~~~~~~lY~~vy~lc~~~~~~~~~~~LY~~l~~~i~~~l~~~~~~~l~   83 (172)
                      ++.+|+++|+.|++||++|+.      ..+++..+||++|+.||++|++++.  +|+.||+++++.+++|+..++.+...
T Consensus        11 ~~~~~e~~W~~L~~ai~~I~~------~~~~~~~s~e~LY~~vy~lc~~~~~--~~~~LY~~l~~~~~~~l~~~~~~~~~   82 (391)
T 2wzk_A           11 GSLQFEDKWDFMHPIVLKLLR------QESVTKQQWFDLFSDVHAVCLWDDK--GSSKIHQALKEDILEFIKQAQARVLS   82 (391)
T ss_dssp             -CCSHHHHHHHHHHHHHHHHH------TCCCCHHHHHHHHHHHHHHHHHCTT--HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ccccHHHHHHHHHHHHHHHHh------CCCCChHHHHHHHHHHHHHHhcCcc--chHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            457999999999999999987      1468899999999999999998654  89999999999999999987643322


Q ss_pred             cccchHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhccc--------CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048133           84 EKHDEHLLRELVKRFANHKVMVKWLALCFNYLERYYIRQR--------ALPTISEIGLTCFRDLVFDALKHKAKDVVITL  155 (172)
Q Consensus        84 ~~~~~~lL~~~~~~W~~y~~~~~~l~~if~YLdr~yi~~~--------~~~~i~~l~l~~f~~~v~~~~~~~l~~~il~~  155 (172)
                      ..+++.||+.|.+.|++|+.++.+|+++|+||||+|+.++        +.++|+++|+.+||++||.+++++++++++++
T Consensus        83 ~~~~e~~L~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~~~~~~~~~~~~I~~lgL~~fr~~v~~~i~~~l~~~ll~l  162 (391)
T 2wzk_A           83 HQDDTALLKAYIVEWRKFFTQCDILPKPFCQLEVTLLGKQSSNKKSNMEDSIVRKLMLDTWNESIFSNIKNRLQDSAMKL  162 (391)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHTTTTTGGGHHHHTTSTTC--------CTTCHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2345789999999999999999999999999999999653        35699999999999999999999999999999


Q ss_pred             HHHHhCCCccchhhhcC
Q 048133          156 IDREREGEEIDRALLKN  172 (172)
Q Consensus       156 I~~eR~g~~id~~lik~  172 (172)
                      |+++|+|+.||+++||+
T Consensus       163 I~~eR~Ge~id~~llk~  179 (391)
T 2wzk_A          163 VHAERLGEAFDSQLVIG  179 (391)
T ss_dssp             HHHHHTTCCCCTHHHHH
T ss_pred             HHHHhCCCCCCHHHHHH
Confidence            99999999999998873

>4ap2_B Cullin-3, CUL-3; ubiquitination, E3 ligase, cell cycle; HET: EDO; 2.80A {Homo sapiens}

Probab=100.00  E-value=5e-37  Score=250.70  Aligned_cols=159  Identities=21%  Similarity=0.455  Sum_probs=144.0

Q ss_pred             CCcccHHhhHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHhhcccccc
Q 048133            3 HKEIDMDEGWDIIQKWITKLRRISEGLPEPPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYNKCKQDLEEYMSSTVFPSL   82 (172)
Q Consensus         3 ~~~~~f~~~W~~l~~~i~~i~~~l~~~~~~~~~~~~~~~lY~~vy~lc~~~~~~~~~~~LY~~l~~~i~~~l~~~~~~~l   82 (172)
                      ..+.+|+++|+.|++||+.|+.   +++    +..+||+||+.||++|+++    .|+.||+++++.+++|+...+.+.+
T Consensus        25 ~~~~~~~~~W~~L~~ai~~I~~---~~~----~~~s~eeLY~~vy~lc~~k----~g~~LY~~l~~~~~~~l~~~v~~~l   93 (410)
T 4ap2_B           25 MDEKYVNSIWDLLKNAIQEIQR---KNN----SGLSFEELYRNAYTMVLHK----HGEKLYTGLREVVTEHLINKVREDV   93 (410)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHT---TCC----TTCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred             CChhHHHHHHHHHHHHHHHHHh---cCC----CCCCHHHHHHHHHHHHhhc----cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456899999999999999886   332    2456999999999999987    8999999999999999994445777


Q ss_pred             ccccchHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhcccCCccHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHh
Q 048133           83 SEKHDEHLLRELVKRFANHKVMVKWLALCFNYLERYYIRQRALPTISEIGLTCFRDLVFD--ALKHKAKDVVITLIDRER  160 (172)
Q Consensus        83 ~~~~~~~lL~~~~~~W~~y~~~~~~l~~if~YLdr~yi~~~~~~~i~~l~l~~f~~~v~~--~~~~~l~~~il~~I~~eR  160 (172)
                      .+..++.||+.|.+.|++|+.++.+|+++|+||||+|+++++.++|+++|+.+|+++||.  +++++++++++++|+++|
T Consensus        94 ~~~~~~~~L~~~~~~W~~~~~~~~~i~~if~YLDR~yv~~~~~~~I~~lgL~lfr~~v~~~~~i~~~l~~~lL~lI~~eR  173 (410)
T 4ap2_B           94 LNSLNNNFLQTLNQAWNDHQTAMVMIRDILMYMDRVYVQQNNVENVYNLGLIIFRDQVVRYGCIRDHLRQTLLDMIARER  173 (410)
T ss_dssp             HTTTTSSHHHHHHHHHHHHHHHHHHHHHHTHHHHHTHHHHTTCCCHHHHHHHHHHHHTTTSSHHHHHHHHHHHHHHHHHH
T ss_pred             HhcCcHHHHHHHHHHHHHHHHHHHhccHHHHHhhHHHHhcCCCCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHc
Confidence            776677899999999999999999999999999999999998999999999999999997  899999999999999999


Q ss_pred             CCCccchhhhcC
Q 048133          161 EGEEIDRALLKN  172 (172)
Q Consensus       161 ~g~~id~~lik~  172 (172)
                      +|+.||+.+||+
T Consensus       174 ~Ge~id~~lik~  185 (410)
T 4ap2_B          174 KGEVVDRGAIRN  185 (410)
T ss_dssp             TTCCCCHHHHHH
T ss_pred             CCCCCCHHHHHH
Confidence            999999999873

>4a64_A Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo sapiens}

Probab=100.00  E-value=1.4e-36  Score=243.97  Aligned_cols=159  Identities=27%  Similarity=0.461  Sum_probs=141.1

Q ss_pred             CCcccHHhhHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHhhcccccc
Q 048133            3 HKEIDMDEGWDIIQKWITKLRRISEGLPEPPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYNKCKQDLEEYMSSTVFPSL   82 (172)
Q Consensus         3 ~~~~~f~~~W~~l~~~i~~i~~~l~~~~~~~~~~~~~~~lY~~vy~lc~~~~~~~~~~~LY~~l~~~i~~~l~~~~~~~l   82 (172)
                      ..+.+|+++|+.|++||++|+.   +++    +..+||++|+.||++|+++    +|+.||+++++.++.|+...+.+..
T Consensus         5 ~~~~~~~~~W~~L~~ai~~I~~---~~~----~~~s~eeLY~~vy~lc~~~----~g~~LY~~l~~~~~~~l~~~~~~~~   73 (354)
T 4a64_A            5 LPENYTDETWQKLKEAVEAIQN---STS----IKYNLEELYQAVENLCSYK----ISANLYKQLRQICEDHIKAQIHQFR   73 (354)
T ss_dssp             CCSSSTTHHHHHHHHHHHHHHT---TCC----CCSCHHHHHHHHHHHHHHS----CHHHHHHHHHHHHHHHHHHTTGGGG
T ss_pred             CCHHHHHHHHHHHHHHHHHHHh---CCC----CCCCHHHHHHHHHHHHhcC----cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3567999999999999999986   332    2346999999999999998    8999999999999999998764433


Q ss_pred             ccc-cchHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhcccC-CccHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Q 048133           83 SEK-HDEHLLRELVKRFANHKVMVKWLALCFNYLERYYIRQRA-LPTISEIGLTCFRDLVFD--ALKHKAKDVVITLIDR  158 (172)
Q Consensus        83 ~~~-~~~~lL~~~~~~W~~y~~~~~~l~~if~YLdr~yi~~~~-~~~i~~l~l~~f~~~v~~--~~~~~l~~~il~~I~~  158 (172)
                      ... +++.||+.+.+.|++|+.++.+|+++|+||||+|+++++ .++|+++|+.+|+++||.  +++++++++++++|++
T Consensus        74 ~~~~~~~~~L~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~~~~~I~~lgL~lfr~~v~~~~~i~~~l~~~ll~lI~~  153 (354)
T 4a64_A           74 EDSLDSVLFLKKIDRCWQNHCRQMIMIRSIFLFLDRTYVLQNSMLPSIWDMGLELFRAHIISDQKVQNKTIDGILLLIER  153 (354)
T ss_dssp             CCSCCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHCSTTTSCCSCCHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHH
T ss_pred             HccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhcCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence            322 346899999999999999999999999999999999886 789999999999999997  7999999999999999


Q ss_pred             HhCCCccchhhhcC
Q 048133          159 EREGEEIDRALLKN  172 (172)
Q Consensus       159 eR~g~~id~~lik~  172 (172)
                      +|+|+.||+.+||+
T Consensus       154 eR~Ge~id~~lik~  167 (354)
T 4a64_A          154 ERNGEAIDRSLLRS  167 (354)
T ss_dssp             HHTTCCCCHHHHHH
T ss_pred             HhCCCCCCHHHHHH
Confidence            99999999999873

>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A

Probab=100.00  E-value=9.7e-35  Score=252.46  Aligned_cols=158  Identities=25%  Similarity=0.470  Sum_probs=140.6

Q ss_pred             HHhhHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHhcCC-----------------------CCCchHHHHH
Q 048133            8 MDEGWDIIQKWITKLRRISEGLPEPPFNVDDYVMLYSSVYSTCIQGP-----------------------HHGYSAQLYN   64 (172)
Q Consensus         8 f~~~W~~l~~~i~~i~~~l~~~~~~~~~~~~~~~lY~~vy~lc~~~~-----------------------~~~~~~~LY~   64 (172)
                      |+++|+.|++||+.|+.   +   .+++..+||++|+.||++|+++.                       |.++|+.||+
T Consensus         1 f~~~W~~L~~ai~~I~~---~---~~~s~~~~~~LY~~vYn~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~LY~   74 (760)
T 1ldj_A            1 LDQIWDDLRAGIQQVYT---R---QSMAKSRYMELYTHVYNYCTSVHQSNQARGAGVPPSKSKKGQTPGGAQFVGLELYK   74 (760)
T ss_dssp             CHHHHHHHHHHHHHHTT---C---CCCCHHHHHHHHHHHHHHTCCC----------------------------TTHHHH
T ss_pred             ChhhHHHHHHHHHHHHh---c---CCCCHHHHHHHHHHHHHHhcCCcccCCCcccccccccccccccccCcchhHHHHHH
Confidence            68999999999999886   1   36899999999999999999862                       2247899999


Q ss_pred             HHHHHHHHHHhhccccccccccchHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhcccC------CccHHHHHHHHHHH
Q 048133           65 KCKQDLEEYMSSTVFPSLSEKHDEHLLRELVKRFANHKVMVKWLALCFNYLERYYIRQRA------LPTISEIGLTCFRD  138 (172)
Q Consensus        65 ~l~~~i~~~l~~~~~~~l~~~~~~~lL~~~~~~W~~y~~~~~~l~~if~YLdr~yi~~~~------~~~i~~l~l~~f~~  138 (172)
                      +++++++.|+.+++ ..+....++.||..|.+.|++|+.++++|+++|+||||+|++++.      .++|+++|+.+||+
T Consensus        75 ~l~~~l~~~l~~~~-~~~~~~~~e~lL~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~~~g~~~~~~I~~lgL~~fr~  153 (760)
T 1ldj_A           75 RLKEFLKNYLTNLL-KDGEDLMDESVLKFYTQQWEDYRFSSKVLNGICAYLNRHWVRRECDEGRKGIYEIYSLALVTWRD  153 (760)
T ss_dssp             HHHHHHHHHHHHHH-HTTCSCTTTTHHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSSCCC-------CCHHHHHHHTTHH
T ss_pred             HHHHHHHHHHHHHH-HHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHcccccccCCCcccHHHHHHHHHHH
Confidence            99999999999876 344555678999999999999999999999999999999999875      67999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCccchhhhcC
Q 048133          139 LVFDALKHKAKDVVITLIDREREGEEIDRALLKN  172 (172)
Q Consensus       139 ~v~~~~~~~l~~~il~~I~~eR~g~~id~~lik~  172 (172)
                      +||.+++++++++++++|+++|+|+.||+.+||+
T Consensus       154 ~vf~~l~~~l~~~lL~lI~~eR~Ge~id~~lik~  187 (760)
T 1ldj_A          154 CLFRPLNKQVTNAVLKLIEKERNGETINTRLISG  187 (760)
T ss_dssp             HHTTTTTTHHHHHHHHHHTTTSCCTTCCTHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHH
Confidence            9999999999999999999999999999999873

>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E*

Probab=99.98  E-value=7.1e-33  Score=240.73  Aligned_cols=156  Identities=24%  Similarity=0.456  Sum_probs=138.7

Q ss_pred             cccHHhhHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHhhcccccccc
Q 048133            5 EIDMDEGWDIIQKWITKLRRISEGLPEPPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYNKCKQDLEEYMSSTVFPSLSE   84 (172)
Q Consensus         5 ~~~f~~~W~~l~~~i~~i~~~l~~~~~~~~~~~~~~~lY~~vy~lc~~~~~~~~~~~LY~~l~~~i~~~l~~~~~~~l~~   84 (172)
                      +.+|+++|+.|++||+.|+.   +++ .+   .+||++|+.||++|+++    +|+.||+++++.++.|+..++ +.+..
T Consensus        56 ~~~~e~~W~~L~~ai~~I~~---~~~-~~---~s~e~LY~~vy~lc~~k----~~~~LY~~l~~~~~~~l~~~~-~~l~~  123 (759)
T 2hye_C           56 DNYTQDTWRKLHEAVRAVQS---STS-IR---YNLEELYQAVENLCSHK----VSPMLYKQLRQACEDHVQAQI-LPFRE  123 (759)
T ss_dssp             CCTTTTHHHHHHHHHHTTST---TCC-CS---SCHHHHHHHHHHHCCTT----THHHHHHHHHHHHHHHHHHHH-HHHTS
T ss_pred             cchHHHHHHHHHHHHHHHHh---CCC-CC---CCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHHHH-HHHHh
Confidence            45679999999999999875   332 23   34999999999999998    789999999999999999875 55533


Q ss_pred             --ccchHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhcccC-CccHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Q 048133           85 --KHDEHLLRELVKRFANHKVMVKWLALCFNYLERYYIRQRA-LPTISEIGLTCFRDLVFDA--LKHKAKDVVITLIDRE  159 (172)
Q Consensus        85 --~~~~~lL~~~~~~W~~y~~~~~~l~~if~YLdr~yi~~~~-~~~i~~l~l~~f~~~v~~~--~~~~l~~~il~~I~~e  159 (172)
                        .+++.||+.|...|++|+.++.+|+++|+||||+|+.+++ .++|+++|+.+|+++||..  ++++++++++++|+++
T Consensus       124 ~~~~~~~~L~~~~~~W~~~~~~~~~i~~if~YLDR~yv~~~~~~~~I~~lgL~lfr~~v~~~~~i~~~l~~~lL~lI~~e  203 (759)
T 2hye_C          124 DSLDSVLFLKKINTCWQDHCRQMIMIRSIFLFLDRTYVLQNSTLPSIWDMGLELFRTHIISDKMVQSKTIDGILLLIERE  203 (759)
T ss_dssp             CCCCTTHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTTSCSSSCCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHTT
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHhhCCCCCCcHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHH
Confidence              2335899999999999999999999999999999999986 7899999999999999996  9999999999999999


Q ss_pred             hCCCccchhhhcC
Q 048133          160 REGEEIDRALLKN  172 (172)
Q Consensus       160 R~g~~id~~lik~  172 (172)
                      |+|+.||+.+||+
T Consensus       204 R~Ge~id~~llk~  216 (759)
T 2hye_C          204 RSGEAVDRSLLRS  216 (759)
T ss_dssp             TTTCCCCHHHHHH
T ss_pred             hcCCCCcHHHHHH
Confidence            9999999998873

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	172
d2hyec2	347	a.118.17.1 (C:55-401) Cullin-4A {Human (Homo sapie	4e-24
d1ldja2	394	a.118.17.1 (A:17-410) Cullin homolog 1, Cul-1 {Hum	6e-24

>d2hyec2 a.118.17.1 (C:55-401) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Length = 347

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cullin repeat-like
family: Cullin repeat
domain: Cullin-4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.3 bits (234), Expect = 4e-24
 Identities = 40/168 (23%), Positives = 80/168 (47%), Gaps = 15/168 (8%)

Query: 9   DEGWDIIQKWITKLRRISEGLPEPPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYNKCKQ 68
            + W  + + +     +            +   LY +V + C     H  S  LY + +Q
Sbjct: 6   QDTWRKLHEAVRA---VQSSTSIRY----NLEELYQAVENLCS----HKVSPMLYKQLRQ 54

Query: 69  DLEEYMSSTVFPSLSEKHDEH-LLRELVKRFANHKVMVKWLALCFNYLERYYIRQRA-LP 126
             E+++ + + P   +  D    L+++   + +H   +  +   F +L+R Y+ Q + LP
Sbjct: 55  ACEDHVQAQILPFREDSLDSVLFLKKINTCWQDHCRQMIMIRSIFLFLDRTYVLQNSTLP 114

Query: 127 TISEIGLTCFRDLVF--DALKHKAKDVVITLIDREREGEEIDRALLKN 172
           +I ++GL  FR  +     ++ K  D ++ LI+RER GE +DR+LL++
Sbjct: 115 SIWDMGLELFRTHIISDKMVQSKTIDGILLLIERERSGEAVDRSLLRS 162

>d1ldja2 a.118.17.1 (A:17-410) Cullin homolog 1, Cul-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 394

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cullin repeat-like
family: Cullin repeat
domain: Cullin homolog 1, Cul-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.0 bits (233), Expect = 6e-24
 Identities = 40/193 (20%), Positives = 81/193 (41%), Gaps = 36/193 (18%)

Query: 9   DEGWDIIQKWITKLRRISEGLPEPPFNVDDYVMLYSSVYSTC------------------ 50
           D+ WD ++  I ++                Y+ LY+ VY+ C                  
Sbjct: 2   DQIWDDLRAGIQQVYT------RQSMAKSRYMELYTHVYNYCTSVHQSNQARGAGVPPSK 55

Query: 51  -----IQGPHHGYSAQLYNKCKQDLEEYMSSTVFPSLSEKHDEHLLRELVKRFANHKVMV 105
                  G       +LY + K+ L+ Y+++ +     +  DE +L+   +++ +++   
Sbjct: 56  SKKGQTPGGAQFVGLELYKRLKEFLKNYLTN-LLKDGEDLMDESVLKFYTQQWEDYRFSS 114

Query: 106 KWLALCFNYLERYYIRQ------RALPTISEIGLTCFRDLVFDALKHKAKDVVITLIDRE 159
           K L     YL R+++R+      + +  I  + L  +RD +F  L  +  + V+ LI++E
Sbjct: 115 KVLNGICAYLNRHWVRRECDEGRKGIYEIYSLALVTWRDCLFRPLNKQVTNAVLKLIEKE 174

Query: 160 REGEEIDRALLKN 172
           R GE I+  L+  
Sbjct: 175 RNGETINTRLISG 187

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	172
d1ldja2	394	Cullin homolog 1, Cul-1 {Human (Homo sapiens) [Tax	100.0
d2hyec2	347	Cullin-4A {Human (Homo sapiens) [TaxId: 9606]}	100.0

>d1ldja2 a.118.17.1 (A:17-410) Cullin homolog 1, Cul-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cullin repeat-like
family: Cullin repeat
domain: Cullin homolog 1, Cul-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6e-34  Score=229.60  Aligned_cols=157  Identities=25%  Similarity=0.473  Sum_probs=139.5

Q ss_pred             HHhhHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHhcCCCC-----------------------CchHHHHH
Q 048133            8 MDEGWDIIQKWITKLRRISEGLPEPPFNVDDYVMLYSSVYSTCIQGPHH-----------------------GYSAQLYN   64 (172)
Q Consensus         8 f~~~W~~l~~~i~~i~~~l~~~~~~~~~~~~~~~lY~~vy~lc~~~~~~-----------------------~~~~~LY~   64 (172)
                      .|++|+.|++||++|++   +   .+++..+||++|+.||++|++++++                       ..|+.||+
T Consensus         1 ~d~~W~~L~~ai~~I~~---~---~~~~~~~~~~lY~~vy~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~LY~   74 (394)
T d1ldja2           1 LDQIWDDLRAGIQQVYT---R---QSMAKSRYMELYTHVYNYCTSVHQSNQARGAGVPPSKSKKGQTPGGAQFVGLELYK   74 (394)
T ss_dssp             CHHHHHHHHHHHHHHTT---C---CCCCHHHHHHHHHHHHHHTCCC----------------------------TTHHHH
T ss_pred             CcchHHHHHHHHHHHHh---c---CCCCHHHHHHHHHHHHHHHhcCCccccccccccchhhhhhccccchhhhHHHHHHH
Confidence            37899999999999985   2   3688899999999999999987542                       14789999


Q ss_pred             HHHHHHHHHHhhccccccccccchHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhcccC------CccHHHHHHHHHHH
Q 048133           65 KCKQDLEEYMSSTVFPSLSEKHDEHLLRELVKRFANHKVMVKWLALCFNYLERYYIRQRA------LPTISEIGLTCFRD  138 (172)
Q Consensus        65 ~l~~~i~~~l~~~~~~~l~~~~~~~lL~~~~~~W~~y~~~~~~l~~if~YLdr~yi~~~~------~~~i~~l~l~~f~~  138 (172)
                      ++++.++.|+.+++ +.+....++++|..+.+.|++|+.++.+++++|+||||+|++++.      .++|+++|+.+|++
T Consensus        75 ~l~~~l~~~l~~i~-~~~~~~~~~~~L~~~~~~W~~~~~~~~~l~~if~YLdr~yv~~~~~~~~~~~~~I~~~~l~~fr~  153 (394)
T d1ldja2          75 RLKEFLKNYLTNLL-KDGEDLMDESVLKFYTQQWEDYRFSSKVLNGICAYLNRHWVRRECDEGRKGIYEIYSLALVTWRD  153 (394)
T ss_dssp             HHHHHHHHHHHHHH-HTTCSCTTTTHHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSSCCC-------CCHHHHHHHTTHH
T ss_pred             HHHHHHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHH
Confidence            99999999999885 666666778999999999999999999999999999999998863      47999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCccchhhhc
Q 048133          139 LVFDALKHKAKDVVITLIDREREGEEIDRALLK  171 (172)
Q Consensus       139 ~v~~~~~~~l~~~il~~I~~eR~g~~id~~lik  171 (172)
                      .||.+++++++++++++|+++|+|+.+|+++|+
T Consensus       154 ~v~~~~~~~l~~~il~~I~~~R~g~~i~~~li~  186 (394)
T d1ldja2         154 CLFRPLNKQVTNAVLKLIEKERNGETINTRLIS  186 (394)
T ss_dssp             HHTTTTTTHHHHHHHHHHTTTSCCTTCCTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCcccHHHHH
Confidence            999999999999999999999999999998886

>d2hyec2 a.118.17.1 (C:55-401) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cullin repeat-like
family: Cullin repeat
domain: Cullin-4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-33  Score=224.16  Aligned_cols=155  Identities=25%  Similarity=0.461  Sum_probs=137.6

Q ss_pred             ccHHhhHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHhhccccccccc
Q 048133            6 IDMDEGWDIIQKWITKLRRISEGLPEPPFNVDDYVMLYSSVYSTCIQGPHHGYSAQLYNKCKQDLEEYMSSTVFPSLSEK   85 (172)
Q Consensus         6 ~~f~~~W~~l~~~i~~i~~~l~~~~~~~~~~~~~~~lY~~vy~lc~~~~~~~~~~~LY~~l~~~i~~~l~~~~~~~l~~~   85 (172)
                      .+|+++|+.|++||+.|+.   +++    +..+|+++|+.||++|+++    +|+.||+++++.|++|+...+.+.+.+.
T Consensus         3 ~~~e~~W~~L~~ai~~I~~---~~~----~~~s~e~lY~~vy~lc~~~----~~~~LY~~l~~~l~~~~~~~~~~~~~~~   71 (347)
T d2hyec2           3 NYTQDTWRKLHEAVRAVQS---STS----IRYNLEELYQAVENLCSHK----VSPMLYKQLRQACEDHVQAQILPFREDS   71 (347)
T ss_dssp             CTTTTHHHHHHHHHHTTST---TCC----CSSCHHHHHHHHHHHCCTT----THHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred             chHHHHHHHHHHHHHHHHh---CCC----CCCCHHHHHHHHHHHHccC----cHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            4899999999999999875   332    3456999999999999998    8899999999999999988765554433


Q ss_pred             -cchHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhcccC-CccHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhC
Q 048133           86 -HDEHLLRELVKRFANHKVMVKWLALCFNYLERYYIRQRA-LPTISEIGLTCFRDLVFD--ALKHKAKDVVITLIDRERE  161 (172)
Q Consensus        86 -~~~~lL~~~~~~W~~y~~~~~~l~~if~YLdr~yi~~~~-~~~i~~l~l~~f~~~v~~--~~~~~l~~~il~~I~~eR~  161 (172)
                       ++..+|+.+.+.|++|+.++.+++++|+||||+|+.+++ .++|+++|+.+|+++||.  .+.++++++++++|+++|+
T Consensus        72 ~~~~~~L~~~~~~W~~~~~~~~~l~~if~YLdr~yv~~~~~~~~i~~~~l~lf~~~v~~~~~~~~~l~~~ll~~I~~~R~  151 (347)
T d2hyec2          72 LDSVLFLKKINTCWQDHCRQMIMIRSIFLFLDRTYVLQNSTLPSIWDMGLELFRTHIISDKMVQSKTIDGILLLIERERS  151 (347)
T ss_dssp             CCTTHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTTSCSSSCCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHTTTT
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhhcCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHc
Confidence             346799999999999999999999999999999998754 578999999999999996  5899999999999999999


Q ss_pred             CCccchhhhc
Q 048133          162 GEEIDRALLK  171 (172)
Q Consensus       162 g~~id~~lik  171 (172)
                      |+.+|+.+|+
T Consensus       152 g~~i~~~ll~  161 (347)
T d2hyec2         152 GEAVDRSLLR  161 (347)
T ss_dssp             TCCCCHHHHH
T ss_pred             CCCCcHHHHH
Confidence            9999999886