Citrus Sinensis ID: 048152

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100----
Protein Sequence
MEDFPKVFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIESGKLDHKLAEFQPSVHVDCTQSVCWTDEDNNLLLQLDIN
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHcccccccHHHHHHHHHcccc
Coil and Loop (DISEMBL)
medfpkvfcgwsweeNKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLqfiesgkldhklaefqpsvhvdctqsvcwtdednnlllqldin
Flexible Loop (DISEMBL)
MEDFPKVFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIESGKLDHKLAEFQPSVHVDCTQSVCWTDEDNNLLLQLDIN
Low Complexity Region (SEG)
MEDFPKVFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIESGKLDHKLAEFQPSVHVDCTQSVCWTDEDNNLLLQLDIN
Disordered region (IsUnstruct)
****PKVFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIESGKLDHKLAEFQPSVHVDCTQSVCWTDEDNNLLLQL***
Disordered Region (DISOPRED)
************WEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIESGKL**********************DEDNNLLLQLDI*
Disordered Region (DISEMBL)
MEDFPKVFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIESGKLDHKLAEFQPSVHVDCTQSVCWTDEDNNLLLQLDIN
Disordered Region (DISPRO)
***FPKVFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIESGKL*****************SVCWTDEDNNLLLQLDIN
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEDFPKVFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIESGKLDHKLAEFQPSVHVDCTQSVCWTDEDNNLLLQLDIN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	104	2.2.26 [Sep-21-2011]
Q6NNN0	81	Protein RADIALIS-like 3 O	yes	no	0.576	0.740	0.540	6e-12
Q58FS3	93	Transcription factor RADI	N/A	no	0.557	0.623	0.559	1e-11
Q1A173	97	Protein RADIALIS-like 6 O	no	no	0.557	0.597	0.525	3e-11
F4JVB8	100	Protein RADIALIS-like 1 O	no	no	0.538	0.56	0.473	8e-10
Q8GW75	100	Protein RADIALIS-like 5 O	no	no	0.490	0.51	0.576	6e-09
Q1G3C4	77	Protein RADIALIS-like 4 O	no	no	0.519	0.701	0.509	8e-09
Q9SIJ5	101	Protein RADIALIS-like 2 O	no	no	0.538	0.554	0.456	5e-08
Q8S9H7	307	Transcription factor DIVA	N/A	no	0.538	0.182	0.508	3e-07

>sp|Q6NNN0|RADL3_ARATH Protein RADIALIS-like 3 OS=Arabidopsis thaliana GN=RL3 PE=2 SV=1

 Score = 69.3 bits (168), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 43/61 (70%), Gaps = 1/61 (1%)

Query: 11 WSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIESGKLD 70
          W+ +ENKLFE ALA  D+  P RW  VA  VGG KSAE+V++HY +L+ D+  IESG+  
Sbjct: 12 WTRKENKLFERALATYDQDTPDRWHNVARAVGG-KSAEEVRRHYELLIRDVNDIESGRYP 70

Query: 71 H 71
          H
Sbjct: 71 H 71

Probable transcription factor.
Arabidopsis thaliana (taxid: 3702)

>sp|Q58FS3|RAD_ANTMA Transcription factor RADIALIS OS=Antirrhinum majus GN=RAD PE=1 SV=1

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/59 (55%), Positives = 44/59 (74%), Gaps = 1/59 (1%)

Query: 11 WSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIESGKL 69
          WS +ENK FE ALAV D+  P RW  VA  V G ++ E+V+KHY IL+ED+++IESGK+
Sbjct: 11 WSAKENKAFERALAVYDKDTPDRWANVARAVEG-RTPEEVKKHYEILVEDIKYIESGKV 68

Involved in the dorsovental asymmetry of flowers. Promotes dorsal identity.

Antirrhinum majus (taxid: 4151)

>sp|Q1A173|RADL6_ARATH Protein RADIALIS-like 6 OS=Arabidopsis thaliana GN=RL6 PE=2 SV=1

 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 31/59 (52%), Positives = 44/59 (74%), Gaps = 1/59 (1%)

Query: 11 WSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIESGKL 69
          W++ +NK+FE ALAV D+  P RW  VA  VGG K+ E+V++HY IL+EDL  IE+G++
Sbjct: 12 WTFSQNKMFERALAVYDKDTPDRWHNVAKAVGG-KTVEEVKRHYDILVEDLINIETGRV 69

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|F4JVB8|RADL1_ARATH Protein RADIALIS-like 1 OS=Arabidopsis thaliana GN=RL1 PE=2 SV=1

 Score = 62.4 bits (150), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 43/57 (75%), Gaps = 1/57 (1%)

Query: 11 WSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIESG 67
          W+ ++NK FE ALA  D+  P+RW+ VA +VGG K+ E+V++HY +L++D+  IE+G
Sbjct: 14 WTAKQNKAFEQALATYDQDTPNRWQNVAKVVGG-KTTEEVKRHYELLVQDINSIENG 69

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GW75|RADL5_ARATH Protein RADIALIS-like 5 OS=Arabidopsis thaliana GN=RL5 PE=3 SV=1

 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 30/52 (57%), Positives = 40/52 (76%), Gaps = 1/52 (1%)

Query: 14 EENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIE 65
          ++NK+FE ALAV D+  P RW+ VA  V G+KSAE+V++HY IL+EDL  IE
Sbjct: 15 KQNKMFERALAVYDKDTPDRWQNVAKAV-GSKSAEEVKRHYDILVEDLMNIE 65

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q1G3C4|RADL4_ARATH Protein RADIALIS-like 4 OS=Arabidopsis thaliana GN=RL4 PE=2 SV=1

 Score = 58.9 bits (141), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 28/55 (50%), Positives = 39/55 (70%), Gaps = 1/55 (1%)

Query: 14 EENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIESGK 68
           E+K FE+ALA  D+  P RW+ +A  VGG KS E+V++HY +LL D+  IESG+
Sbjct: 14 REDKQFEMALAKFDKDTPDRWQKIARAVGG-KSTEEVKRHYELLLRDVNDIESGR 67

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIJ5|RADL2_ARATH Protein RADIALIS-like 2 OS=Arabidopsis thaliana GN=RL2 PE=2 SV=1

 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 39/57 (68%), Gaps = 1/57 (1%)

Query: 11 WSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIESG 67
          W+ ++NK FE ALAV D+  P RW  VA  VGG K+ E+ ++ Y +L+ D++ IE+G
Sbjct: 14 WTVKQNKAFERALAVYDQDTPDRWHNVARAVGG-KTPEEAKRQYDLLVRDIESIENG 69

Probable transcription factor. Required for female gametophyte development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8S9H7|DIV_ANTMA Transcription factor DIVARICATA OS=Antirrhinum majus GN=DIVARICATA PE=2 SV=1

 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 36/57 (63%), Gaps = 1/57 (1%)

Query: 11 WSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIESG 67
          W+  ENK FE ALAV DE  P+RWE VA  V G K+  DV + Y  L +D+  IE+G
Sbjct: 26 WTAAENKAFENALAVFDENTPNRWERVAERVPG-KTVGDVMRQYKELEDDVSSIEAG 81

Involved in the dorsovental asymmetry of flowers. Promotes ventral identity.

Antirrhinum majus (taxid: 4151)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	104
224130866	98	predicted protein [Populus trichocarpa]	0.913	0.969	0.833	2e-37
224064752	103	predicted protein [Populus trichocarpa]	0.980	0.990	0.757	6e-37
225437799	98	PREDICTED: uncharacterized protein LOC10	0.942	1.0	0.721	4e-34
356503964	108	PREDICTED: uncharacterized protein LOC10	0.951	0.916	0.717	1e-32
147818958	202	hypothetical protein VITISV_040171 [Viti	0.855	0.440	0.726	9e-32
351721937	97	uncharacterized protein LOC100500464 [Gl	0.923	0.989	0.697	5e-31
297744097	132	unnamed protein product [Vitis vinifera]	0.875	0.689	0.711	1e-30
357442077	93	hypothetical protein MTR_1g086180 [Medic	0.894	1.0	0.688	5e-29
255548273	109	conserved hypothetical protein [Ricinus	0.855	0.816	0.681	4e-28
357511539	114	DIV3B protein [Medicago truncatula] gi|3	0.855	0.780	0.670	5e-27

>gi|224130866|ref|XP_002320944.1| predicted protein [Populus trichocarpa] gi|222861717|gb|EEE99259.1| predicted protein [Populus trichocarpa]

 Score =  159 bits (403), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 80/96 (83%), Positives = 86/96 (89%), Gaps = 1/96 (1%)

Query: 10  GWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIESGKL 69
           GWSWEENKLFE+ALAVVDE+DP RW+VVAAMVGG KS EDVQKHYVILLEDLQ IESGKL
Sbjct: 3   GWSWEENKLFEMALAVVDEEDPDRWKVVAAMVGGKKSEEDVQKHYVILLEDLQGIESGKL 62

Query: 70  DHKL-AEFQPSVHVDCTQSVCWTDEDNNLLLQLDIN 104
           DHKL  E QP V VDCT+SVCWTDED+ LL+QLDIN
Sbjct: 63  DHKLVGEAQPCVQVDCTESVCWTDEDHKLLVQLDIN 98

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224064752|ref|XP_002301546.1| predicted protein [Populus trichocarpa] gi|222843272|gb|EEE80819.1| predicted protein [Populus trichocarpa]

 Score =  157 bits (398), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 78/103 (75%), Positives = 86/103 (83%), Gaps = 1/103 (0%)

Query: 1   MEDFPKVFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLED 60
           M+D PKV  GWSWEENKLFE+ALAVVDE+DP RW+VVAAMVGG KS EDVQKHYVILLED
Sbjct: 1   MDDLPKVLYGWSWEENKLFEMALAVVDEEDPDRWKVVAAMVGGRKSEEDVQKHYVILLED 60

Query: 61  LQFIESGKLDHKL-AEFQPSVHVDCTQSVCWTDEDNNLLLQLD 102
           LQ IESGKLDH L  E QP V VDC+QSVCWTDED+  +L  +
Sbjct: 61  LQGIESGKLDHTLVGEAQPCVQVDCSQSVCWTDEDHKYVLSFN 103

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225437799|ref|XP_002281797.1| PREDICTED: uncharacterized protein LOC100250300 [Vitis vinifera]

 Score =  148 bits (373), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 75/104 (72%), Positives = 86/104 (82%), Gaps = 6/104 (5%)

Query: 1   MEDFPKVFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLED 60
           M+DFP V C WSWEENK FELALAVVDE+DP RW+VVAAMVGG KSAE+V+KHYVILL+D
Sbjct: 1   MDDFPNVLCEWSWEENKSFELALAVVDERDPDRWKVVAAMVGG-KSAEEVEKHYVILLQD 59

Query: 61  LQFIESGKLDHKLAEFQPSVHVDCTQSVCWTDEDNNLLLQLDIN 104
           LQFIESG++DHKL E QP     C Q  CWTD+D+ LL+QLDI 
Sbjct: 60  LQFIESGEMDHKLGEAQP-----CVQLECWTDQDHKLLVQLDIK 98

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356503964|ref|XP_003520769.1| PREDICTED: uncharacterized protein LOC100800948 [Glycine max]

 Score =  143 bits (361), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 71/99 (71%), Positives = 78/99 (78%)

Query: 1  MEDFPKVFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLED 60
          MEDF K   GWSWEENKLFELALAVVDEQ P RWEVVAAMVGG KSA DVQ+HYVILLED
Sbjct: 1  MEDFAKSLSGWSWEENKLFELALAVVDEQHPERWEVVAAMVGGEKSAGDVQEHYVILLED 60

Query: 61 LQFIESGKLDHKLAEFQPSVHVDCTQSVCWTDEDNNLLL 99
          L  IESGKLDH L E  P V V+C  S+C +D D ++L+
Sbjct: 61 LLVIESGKLDHTLGEVVPFVLVECKDSICLSDNDTSILV 99

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147818958|emb|CAN67130.1| hypothetical protein VITISV_040171 [Vitis vinifera]

 Score =  140 bits (353), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 69/95 (72%), Positives = 79/95 (83%), Gaps = 6/95 (6%)

Query: 1  MEDFPKVFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLED 60
          M+DFP V C WSWEENK FELALAVVDE+DP RW+VVAAMVGG KSAE+V+KHYVILL+D
Sbjct: 1  MDDFPNVLCEWSWEENKSFELALAVVDERDPDRWKVVAAMVGG-KSAEEVEKHYVILLQD 59

Query: 61 LQFIESGKLDHKLAEFQPSVHVDCTQSVCWTDEDN 95
          LQFIESG++DHKL E QP     C Q  CWTD+D+
Sbjct: 60 LQFIESGEMDHKLGEAQP-----CVQLECWTDQDH 89

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721937|ref|NP_001238506.1| uncharacterized protein LOC100500464 [Glycine max] gi|255630389|gb|ACU15551.1| unknown [Glycine max]

 Score =  138 bits (347), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 67/96 (69%), Positives = 76/96 (79%)

Query: 1  MEDFPKVFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLED 60
          M+DF K  CGWSWEENKLFELALA VDEQ P RWEVVAAMVGG KSA DVQ+HYVILLED
Sbjct: 1  MDDFAKSLCGWSWEENKLFELALAAVDEQHPERWEVVAAMVGGEKSAGDVQEHYVILLED 60

Query: 61 LQFIESGKLDHKLAEFQPSVHVDCTQSVCWTDEDNN 96
          L  IESGKLD+ L E  P V V+C +S+C + +D +
Sbjct: 61 LLVIESGKLDNTLGEVMPVVLVECKESMCLSHDDTS 96

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744097|emb|CBI37067.3| unnamed protein product [Vitis vinifera]

 Score =  136 bits (343), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 69/97 (71%), Positives = 80/97 (82%), Gaps = 6/97 (6%)

Query: 1  MEDFPKVFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLED 60
          M+DFP V C WSWEENK FELALAVVDE+DP RW+VVAAMVGG KSAE+V+KHYVILL+D
Sbjct: 1  MDDFPNVLCEWSWEENKSFELALAVVDERDPDRWKVVAAMVGG-KSAEEVEKHYVILLQD 59

Query: 61 LQFIESGKLDHKLAEFQPSVHVDCTQSVCWTDEDNNL 97
          LQFIESG++DHKL E QP     C Q  CWTD+D+ +
Sbjct: 60 LQFIESGEMDHKLGEAQP-----CVQLECWTDQDHKI 91

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357442077|ref|XP_003591316.1| hypothetical protein MTR_1g086180 [Medicago truncatula] gi|355480364|gb|AES61567.1| hypothetical protein MTR_1g086180 [Medicago truncatula]

 Score =  131 bits (329), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 64/93 (68%), Positives = 74/93 (79%)

Query: 1  MEDFPKVFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLED 60
          M+D  K  CGWSW+ENKLFELALA+VDE  P RWE+VAAMVGG KSA +VQKHYVILLED
Sbjct: 1  MDDILKGLCGWSWKENKLFELALALVDESHPERWEMVAAMVGGEKSAGEVQKHYVILLED 60

Query: 61 LQFIESGKLDHKLAEFQPSVHVDCTQSVCWTDE 93
          L+ IESGK DHKL E    V VD T+S+C +D+
Sbjct: 61 LELIESGKFDHKLGEDNTCVIVDLTESLCLSDK 93

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255548273|ref|XP_002515193.1| conserved hypothetical protein [Ricinus communis] gi|223545673|gb|EEF47177.1| conserved hypothetical protein [Ricinus communis]

 Score =  128 bits (321), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 62/91 (68%), Positives = 75/91 (82%), Gaps = 2/91 (2%)

Query: 10 GWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIESGKL 69
          GWSWEENKLFELALA+VDE+ P RWE VA+MVGG KSA+DVQ HYVILL+DLQ IESG+L
Sbjct: 4  GWSWEENKLFELALAIVDEEHPDRWEAVASMVGGKKSADDVQNHYVILLQDLQCIESGEL 63

Query: 70 DHKLAEFQPS--VHVDCTQSVCWTDEDNNLL 98
          DH + E   +  V VDCTQ +CWT++D+ +L
Sbjct: 64 DHFIVEESQAVCVQVDCTQPICWTEDDHKML 94

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357511539|ref|XP_003626058.1| DIV3B protein [Medicago truncatula] gi|355501073|gb|AES82276.1| DIV3B protein [Medicago truncatula]

 Score =  124 bits (312), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 63/94 (67%), Positives = 71/94 (75%), Gaps = 5/94 (5%)

Query: 1   MEDFPKVFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLED 60
           M D    FCGWSW+ENKLFELALA+VDE+ P RWEVVAAMVGG KSA DVQ+HYVILLED
Sbjct: 25  MNDMAWSFCGWSWKENKLFELALAMVDEKHPERWEVVAAMVGGDKSAGDVQEHYVILLED 84

Query: 61  LQFIESGKLDHKLAEFQPSVHVDCTQSVCWTDED 94
           L  IESGK+DHKL   QP       +S+C  D+D
Sbjct: 85  LHVIESGKVDHKLGGIQPK-----EESLCLPDDD 113

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	104
TAIR|locus:2115260	81	RL3 "RAD-like 3" [Arabidopsis	0.576	0.740	0.540	1.2e-12
UNIPROTKB|Q58FS3	93	RAD "Transcription factor RADI	0.557	0.623	0.559	3.1e-12
TAIR|locus:2025182	97	RL6 "RAD-like 6" [Arabidopsis	0.557	0.597	0.525	1e-11
TAIR|locus:2016417	100	RL5 "RAD-like 5" [Arabidopsis	0.519	0.54	0.563	4.5e-11
TAIR|locus:4010713631	77	RL4 "RAD-like 4" [Arabidopsis	0.548	0.740	0.5	7.4e-11
TAIR|locus:2136283	100	RL1 "RAD-like 1" [Arabidopsis	0.538	0.56	0.473	7.4e-11
TAIR|locus:2074723	263	AT3G11280 [Arabidopsis thalian	0.557	0.220	0.491	2.9e-10
UNIPROTKB|Q8S9H7	307	DIVARICATA "Transcription fact	0.538	0.182	0.508	7.2e-10
TAIR|locus:2159607	298	AT5G08520 [Arabidopsis thalian	0.538	0.187	0.473	1.1e-09
TAIR|locus:2166459	277	AT5G05790 [Arabidopsis thalian	0.538	0.202	0.526	1.5e-09

TAIR|locus:2115260 RL3 "RAD-like 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 33/61 (54%), Positives = 43/61 (70%)

Query:    11 WSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIESGKLD 70
             W+ +ENKLFE ALA  D+  P RW  VA  VGG KSAE+V++HY +L+ D+  IESG+  
Sbjct:    12 WTRKENKLFERALATYDQDTPDRWHNVARAVGG-KSAEEVRRHYELLIRDVNDIESGRYP 70

Query:    71 H 71
             H
Sbjct:    71 H 71

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

UNIPROTKB|Q58FS3 RAD "Transcription factor RADIALIS" [Antirrhinum majus (taxid:4151)]

 Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 33/59 (55%), Positives = 44/59 (74%)

Query:    11 WSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIESGKL 69
             WS +ENK FE ALAV D+  P RW  VA  V G ++ E+V+KHY IL+ED+++IESGK+
Sbjct:    11 WSAKENKAFERALAVYDKDTPDRWANVARAVEG-RTPEEVKKHYEILVEDIKYIESGKV 68

GO:0009908 "flower development" evidence=IMP

GO:0048262 "determination of dorsal/ventral asymmetry" evidence=IMP

TAIR|locus:2025182 RL6 "RAD-like 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
 Identities = 31/59 (52%), Positives = 44/59 (74%)

Query:    11 WSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIESGKL 69
             W++ +NK+FE ALAV D+  P RW  VA  VGG K+ E+V++HY IL+EDL  IE+G++
Sbjct:    12 WTFSQNKMFERALAVYDKDTPDRWHNVAKAVGG-KTVEEVKRHYDILVEDLINIETGRV 69

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0009507 "chloroplast" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2016417 RL5 "RAD-like 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
 Identities = 31/55 (56%), Positives = 42/55 (76%)

Query:    11 WSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIE 65
             W+ ++NK+FE ALAV D+  P RW+ VA  VG +KSAE+V++HY IL+EDL  IE
Sbjct:    12 WTSKQNKMFERALAVYDKDTPDRWQNVAKAVG-SKSAEEVKRHYDILVEDLMNIE 65

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:4010713631 RL4 "RAD-like 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
 Identities = 29/58 (50%), Positives = 41/58 (70%)

Query:    11 WSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIESGK 68
             W+  E+K FE+ALA  D+  P RW+ +A  VGG KS E+V++HY +LL D+  IESG+
Sbjct:    11 WTAREDKQFEMALAKFDKDTPDRWQKIARAVGG-KSTEEVKRHYELLLRDVNDIESGR 67

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2136283 RL1 "RAD-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
 Identities = 27/57 (47%), Positives = 43/57 (75%)

Query:    11 WSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIESG 67
             W+ ++NK FE ALA  D+  P+RW+ VA +VGG K+ E+V++HY +L++D+  IE+G
Sbjct:    14 WTAKQNKAFEQALATYDQDTPNRWQNVAKVVGG-KTTEEVKRHYELLVQDINSIENG 69

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2074723 AT3G11280 [Arabidopsis thaliana (taxid:3702)]

 Score = 133 (51.9 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
 Identities = 29/59 (49%), Positives = 39/59 (66%)

Query:    11 WSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIESGKL 69
             W+ EENK+FE ALA+  E  P RW  VA+M+ G K+  DV K Y  L ED+  IE+G++
Sbjct:    33 WTKEENKMFERALAIYAEDSPDRWFKVASMIPG-KTVFDVMKQYSKLEEDVFDIEAGRV 90

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0019344 "cysteine biosynthetic process" evidence=RCA

UNIPROTKB|Q8S9H7 DIVARICATA "Transcription factor DIVARICATA" [Antirrhinum majus (taxid:4151)]

 Score = 129 (50.5 bits), Expect = 7.2e-10, Sum P(2) = 7.2e-10
 Identities = 29/57 (50%), Positives = 36/57 (63%)

Query:    11 WSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIESG 67
             W+  ENK FE ALAV DE  P+RWE VA  V G K+  DV + Y  L +D+  IE+G
Sbjct:    26 WTAAENKAFENALAVFDENTPNRWERVAERVPG-KTVGDVMRQYKELEDDVSSIEAG 81

GO:0009908 "flower development" evidence=IMP

GO:0048262 "determination of dorsal/ventral asymmetry" evidence=IMP

TAIR|locus:2159607 AT5G08520 [Arabidopsis thaliana (taxid:3702)]

 Score = 125 (49.1 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
 Identities = 27/57 (47%), Positives = 38/57 (66%)

Query:    11 WSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIESG 67
             WS E++  FE ALA   ++   RWE +AA V G KS E +++HY +L+ED+  IESG
Sbjct:    12 WSREDDIAFERALANNTDESEERWEKIAADVPG-KSVEQIKEHYELLVEDVTRIESG 67

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2166459 AT5G05790 [Arabidopsis thaliana (taxid:3702)]

 Score = 128 (50.1 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
 Identities = 30/57 (52%), Positives = 36/57 (63%)

Query:    11 WSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIESG 67
             W+ EENK FE ALAV  +  P RW  VAAM+ G K+  DV + Y  L EDL  IE+G
Sbjct:    31 WTKEENKKFERALAVYADDTPDRWFKVAAMIPG-KTISDVMRQYSKLEEDLFDIEAG 86

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0061007202 hypothetical protein (99 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	104
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.28
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	99.08
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	99.04
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	98.89
KOG0724	335	consensus Zuotin and related molecular chaperones	98.86
PLN03212	249	Transcription repressor MYB5; Provisional	98.39
PLN03091	459	hypothetical protein; Provisional	98.23
PLN03212	249	Transcription repressor MYB5; Provisional	97.87
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.86
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	97.77
PLN03091	459	hypothetical protein; Provisional	97.69
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	97.33
KOG0048	238	consensus Transcription factor, Myb superfamily [T	97.31
KOG4167	907	consensus Predicted DNA-binding protein, contains	97.28
KOG0048	238	consensus Transcription factor, Myb superfamily [T	97.21
KOG0049	939	consensus Transcription factor, Myb superfamily [T	96.75
KOG1279	506	consensus Chromatin remodeling factor subunit and	96.69
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	96.6
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	96.48
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	95.91
KOG0051	607	consensus RNA polymerase I termination factor, Myb	95.8
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	95.63
KOG1194	534	consensus Predicted DNA-binding protein, contains	95.48
KOG0049	939	consensus Transcription factor, Myb superfamily [T	95.32
PLN03142	1033	Probable chromatin-remodeling complex ATPase chain	95.11
PF09111	118	SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain	94.78
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	93.01
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	90.43
COG5118	507	BDP1 Transcription initiation factor TFIIIB, Bdp1	89.77
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	88.45
PF12776	96	Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain;	88.4
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	88.26
KOG4329	445	consensus DNA-binding protein [General function pr	87.14
smart00595	89	MADF subfamily of SANT domain.	86.63
COG5147	512	REB1 Myb superfamily proteins, including transcrip	86.37
KOG3554	693	consensus Histone deacetylase complex, MTA1 compon	85.3
PF10545	85	MADF_DNA_bdg: Alcohol dehydrogenase transcription	84.85

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.28  E-value=1.2e-11  Score=73.76  Aligned_cols=45  Identities=22%  Similarity=0.433  Sum_probs=40.6

Q ss_pred             CCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcC-CCCCHHHHHHHHHHH
Q 048152            9 CGWSWEENKLFELALAVVDEQDPHRWEVVAAMVG-GTKSAEDVQKHYVIL   57 (104)
Q Consensus         9 ~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vp-g~KS~~eV~~ryk~L   57 (104)
                      ..||.+|+.+|..|+.+|+.+   +|.+||..|| | ||..+|+.||..+
T Consensus         2 ~~Wt~eE~~~l~~~v~~~g~~---~W~~Ia~~~~~~-Rt~~qc~~~~~~~   47 (48)
T PF00249_consen    2 GPWTEEEDEKLLEAVKKYGKD---NWKKIAKRMPGG-RTAKQCRSRYQNL   47 (48)
T ss_dssp             -SS-HHHHHHHHHHHHHSTTT---HHHHHHHHHSSS-STHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhCCc---HHHHHHHHcCCC-CCHHHHHHHHHhh
Confidence            469999999999999999875   8999999999 7 9999999999876

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=99.08  E-value=4.1e-10  Score=64.16  Aligned_cols=46  Identities=26%  Similarity=0.489  Sum_probs=42.2

Q ss_pred             CCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHH
Q 048152            9 CGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILL   58 (104)
Q Consensus         9 ~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~   58 (104)
                      ..||.+|+.+|..+++.|+.   .+|..||..+|+ ||..+|+.+|..+.
T Consensus         2 ~~Wt~~E~~~l~~~~~~~g~---~~w~~Ia~~~~~-rt~~~~~~~~~~~~   47 (49)
T smart00717        2 GEWTEEEDELLIELVKKYGK---NNWEKIAKELPG-RTAEQCRERWNNLL   47 (49)
T ss_pred             CCCCHHHHHHHHHHHHHHCc---CCHHHHHHHcCC-CCHHHHHHHHHHHc
Confidence            57999999999999999974   469999999998 99999999999874

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=99.04  E-value=6e-10  Score=62.74  Aligned_cols=44  Identities=23%  Similarity=0.484  Sum_probs=40.7

Q ss_pred             CCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHH
Q 048152           10 GWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVIL   57 (104)
Q Consensus        10 ~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L   57 (104)
                      .||.+|+++|..++..|+.   ..|..||..+|+ ||..+|+.+|..+
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~---~~w~~Ia~~~~~-rs~~~~~~~~~~~   44 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGK---NNWEKIAKELPG-RTPKQCRERWRNL   44 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCc---CCHHHHHhHcCC-CCHHHHHHHHHHh
Confidence            5999999999999999974   469999999999 9999999999876

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=98.89  E-value=5e-09  Score=64.22  Aligned_cols=41  Identities=17%  Similarity=0.463  Sum_probs=35.8

Q ss_pred             CCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHH
Q 048152           11 WSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVI   56 (104)
Q Consensus        11 WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~   56 (104)
                      ||.+|+.+|..+...|..    .|.+||..||. ||..+|+.||..
T Consensus         1 WT~eEd~~L~~~~~~~g~----~W~~Ia~~l~~-Rt~~~~~~r~~~   41 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYGN----DWKKIAEHLGN-RTPKQCRNRWRN   41 (60)
T ss_dssp             S-HHHHHHHHHHHHHHTS-----HHHHHHHSTT-S-HHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCc----CHHHHHHHHCc-CCHHHHHHHHHH
Confidence            999999999999999953    59999999976 999999999998

...

>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]

Probab=98.86  E-value=4.1e-09  Score=83.48  Aligned_cols=64  Identities=33%  Similarity=0.469  Sum_probs=59.9

Q ss_pred             CCCCHHHHHHHHHHHhhcCCC----CCchHHHHHHHcCCCCCHHHHHHHHHHHHHhhhhhcCCCCCCc
Q 048152            9 CGWSWEENKLFELALAVVDEQ----DPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIESGKLDHK   72 (104)
Q Consensus         9 ~~WT~eE~k~fE~ALa~~p~~----~pdRWekIA~~vpg~KS~~eV~~ryk~L~~dV~~IEsG~v~~~   72 (104)
                      +.|+.+..+.|++||+.|..+    ++++|++++.+||+-++..+++.+|..++.||..|++|++++|
T Consensus        32 ~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~p   99 (335)
T KOG0724|consen   32 SLWTEEEFKKIEKALAILDDDEPRRTPDSWDKFAEALPLEKRLEDKIEEYIGLVFDVNIRESGQKPFP   99 (335)
T ss_pred             hhhHHHHHHHHHHHHHHHhccccccchhhhhHHHhcCccccccchhHHhhhhhHHHHhhhhccCCCcc
Confidence            559999999999999999865    8999999999999878999999999999999999999999877

>PLN03212 Transcription repressor MYB5; Provisional

Probab=98.39  E-value=8.1e-07  Score=70.14  Aligned_cols=67  Identities=16%  Similarity=0.306  Sum_probs=54.0

Q ss_pred             CCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHc-CCCCCHHHHHHHHHHHHH-hhhhhcCCCCCCccccCCCccccCCc
Q 048152            8 FCGWSWEENKLFELALAVVDEQDPHRWEVVAAMV-GGTKSAEDVQKHYVILLE-DLQFIESGKLDHKLAEFQPSVHVDCT   85 (104)
Q Consensus         8 ~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~v-pg~KS~~eV~~ryk~L~~-dV~~IEsG~v~~~~~~~~~~~~~erk   85 (104)
                      ...||.|||.+|-.++++|..   .+|..||..+ +| ||..+|+.||...+. +|.                     + 
T Consensus        25 Rg~WT~EEDe~L~~lV~kyG~---~nW~~IAk~~g~g-RT~KQCReRW~N~L~P~I~---------------------k-   78 (249)
T PLN03212         25 RGPWTVEEDEILVSFIKKEGE---GRWRSLPKRAGLL-RCGKSCRLRWMNYLRPSVK---------------------R-   78 (249)
T ss_pred             CCCCCHHHHHHHHHHHHHhCc---ccHHHHHHhhhcC-CCcchHHHHHHHhhchhcc---------------------c-
Confidence            456999999999999999963   4799999988 47 999999999986642 111                     1 


Q ss_pred             ccccCCHHHHHHHhhhc
Q 048152           86 QSVCWTDEDNNLLLQLD  102 (104)
Q Consensus        86 kg~pWTeeEhrlFL~~~  102 (104)
                        -|||+||-.++|.+.
T Consensus        79 --gpWT~EED~lLlel~   93 (249)
T PLN03212         79 --GGITSDEEDLILRLH   93 (249)
T ss_pred             --CCCChHHHHHHHHHH
Confidence              279999999888653

>PLN03091 hypothetical protein; Provisional

Probab=98.23  E-value=2e-06  Score=72.59  Aligned_cols=68  Identities=16%  Similarity=0.323  Sum_probs=53.9

Q ss_pred             CCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcC-CCCCHHHHHHHHHHHHHhhhhhcCCCCCCccccCCCccccCCcc
Q 048152            8 FCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVG-GTKSAEDVQKHYVILLEDLQFIESGKLDHKLAEFQPSVHVDCTQ   86 (104)
Q Consensus         8 ~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vp-g~KS~~eV~~ryk~L~~dV~~IEsG~v~~~~~~~~~~~~~erkk   86 (104)
                      ...||.|||++|..++.+|+.   ..|.+||..++ | ||..+|+.||...+.-      +              +.+  
T Consensus        14 Kg~WTpEEDe~L~~~V~kyG~---~nWs~IAk~~g~g-RT~KQCRERW~NyLdP------~--------------IkK--   67 (459)
T PLN03091         14 KGLWSPEEDEKLLRHITKYGH---GCWSSVPKQAGLQ-RCGKSCRLRWINYLRP------D--------------LKR--   67 (459)
T ss_pred             CCCCCHHHHHHHHHHHHHhCc---CCHHHHhhhhccC-cCcchHhHHHHhccCC------c--------------ccC--
Confidence            456999999999999999975   46999999885 6 9999999999754311      1              111  


Q ss_pred             cccCCHHHHHHHhhhc
Q 048152           87 SVCWTDEDNNLLLQLD  102 (104)
Q Consensus        87 g~pWTeeEhrlFL~~~  102 (104)
                       -|||.||-+++|.+.
T Consensus        68 -gpWT~EED~lLLeL~   82 (459)
T PLN03091         68 -GTFSQQEENLIIELH   82 (459)
T ss_pred             -CCCCHHHHHHHHHHH
Confidence             279999999998764

>PLN03212 Transcription repressor MYB5; Provisional

Probab=97.87  E-value=3.2e-05  Score=61.15  Aligned_cols=49  Identities=16%  Similarity=0.359  Sum_probs=42.5

Q ss_pred             CCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHHHhh
Q 048152            8 FCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDL   61 (104)
Q Consensus         8 ~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~~dV   61 (104)
                      ...||.||+.++-.+.+.|..    +|.+||..||| ||-.+|+.||..++.-.
T Consensus        78 kgpWT~EED~lLlel~~~~Gn----KWs~IAk~LpG-RTDnqIKNRWns~LrK~  126 (249)
T PLN03212         78 RGGITSDEEDLILRLHRLLGN----RWSLIAGRIPG-RTDNEIKNYWNTHLRKK  126 (249)
T ss_pred             cCCCChHHHHHHHHHHHhccc----cHHHHHhhcCC-CCHHHHHHHHHHHHhHH
Confidence            467999999999888888763    79999999999 99999999999776543

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.86  E-value=3.5e-05  Score=64.95  Aligned_cols=51  Identities=25%  Similarity=0.479  Sum_probs=46.2

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHH
Q 048152            3 DFPKVFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVIL   57 (104)
Q Consensus         3 ~~~~~~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L   57 (104)
                      +||.....||.+|.-+|-.|+.+|.-|.   |+-||..|+. ||.+||+.||...
T Consensus        67 s~~i~~~~WtadEEilLLea~~t~G~GN---W~dIA~hIGt-Ktkeeck~hy~k~  117 (438)
T KOG0457|consen   67 SFPILDPSWTADEEILLLEAAETYGFGN---WQDIADHIGT-KTKEECKEHYLKH  117 (438)
T ss_pred             CCCCCCCCCChHHHHHHHHHHHHhCCCc---HHHHHHHHcc-cchHHHHHHHHHH
Confidence            5788889999999999999999997665   9999999986 9999999999764

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=97.77  E-value=0.00013  Score=45.79  Aligned_cols=47  Identities=15%  Similarity=0.264  Sum_probs=39.7

Q ss_pred             CCCCCHHHHHHHHHHHhhcCCCCCchH---HHHHHHcCCCC-CHHHHHHHHHHH
Q 048152            8 FCGWSWEENKLFELALAVVDEQDPHRW---EVVAAMVGGTK-SAEDVQKHYVIL   57 (104)
Q Consensus         8 ~~~WT~eE~k~fE~ALa~~p~~~pdRW---ekIA~~vpg~K-S~~eV~~ryk~L   57 (104)
                      .-.||.||...|..||..|+.+.   |   .+|++.+...+ |..+|+.|++.-
T Consensus         3 r~~WT~eeh~~Fl~ai~~~G~g~---~a~pk~I~~~~~~~~lT~~qV~SH~QKy   53 (57)
T TIGR01557         3 RVVWTEDLHDRFLQAVQKLGGPD---WATPKRILELMVVDGLTRDQVASHLQKY   53 (57)
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCc---ccchHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            34699999999999999997533   8   99999886546 999999999864

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>PLN03091 hypothetical protein; Provisional

Probab=97.69  E-value=9.2e-05  Score=62.74  Aligned_cols=48  Identities=23%  Similarity=0.386  Sum_probs=43.0

Q ss_pred             CCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 048152            8 FCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLED   60 (104)
Q Consensus         8 ~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~~d   60 (104)
                      ...||.||++++-...+.|+.    +|.+||..||| ||..+|+.||..++.-
T Consensus        67 KgpWT~EED~lLLeL~k~~Gn----KWskIAk~LPG-RTDnqIKNRWnslLKK  114 (459)
T PLN03091         67 RGTFSQQEENLIIELHAVLGN----RWSQIAAQLPG-RTDNEIKNLWNSCLKK  114 (459)
T ss_pred             CCCCCHHHHHHHHHHHHHhCc----chHHHHHhcCC-CCHHHHHHHHHHHHHH
Confidence            457999999999999999863    89999999999 9999999999987654

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=97.33  E-value=0.00027  Score=60.48  Aligned_cols=46  Identities=28%  Similarity=0.424  Sum_probs=41.5

Q ss_pred             CCCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHH
Q 048152            7 VFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVIL   57 (104)
Q Consensus         7 ~~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L   57 (104)
                      ....||.+|.-+|-.++..|.    |-|++||..|+. ||++||+-||-.|
T Consensus       278 ~dk~WS~qE~~LLLEGIe~yg----DdW~kVA~HVgt-Kt~EqCIl~FL~L  323 (531)
T COG5259         278 RDKNWSRQELLLLLEGIEMYG----DDWDKVARHVGT-KTKEQCILHFLQL  323 (531)
T ss_pred             ccccccHHHHHHHHHHHHHhh----hhHHHHHHHhCC-CCHHHHHHHHHcC
Confidence            445799999999999999996    369999999987 9999999999877

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=97.31  E-value=0.00036  Score=53.70  Aligned_cols=65  Identities=17%  Similarity=0.342  Sum_probs=53.9

Q ss_pred             CCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcC-CCCCHHHHHHHHH-HHHHhhhhhcCCCCCCccccCCCccccCCcc
Q 048152            9 CGWSWEENKLFELALAVVDEQDPHRWEVVAAMVG-GTKSAEDVQKHYV-ILLEDLQFIESGKLDHKLAEFQPSVHVDCTQ   86 (104)
Q Consensus         9 ~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vp-g~KS~~eV~~ryk-~L~~dV~~IEsG~v~~~~~~~~~~~~~erkk   86 (104)
                      .+||.|||..|-.-+.+|..+   +|-.||...| | |+-..|+.|.- +|-=||+                     +  
T Consensus        10 GpWt~EED~~L~~~V~~~G~~---~W~~i~k~~gl~-R~GKSCRlRW~NyLrP~ik---------------------r--   62 (238)
T KOG0048|consen   10 GPWTQEEDLTQIRSIKSFGKH---NGTALPKLAGLR-RCGKSCRLRWTNYLRPDLK---------------------R--   62 (238)
T ss_pred             CCCChHHHHHHHHHHHHhCCC---CcchhhhhcCCC-ccchHHHHHhhcccCCCcc---------------------C--
Confidence            789999999999999999765   7999999999 8 99999998863 4433333                     2  


Q ss_pred             cccCCHHHHHHHhhh
Q 048152           87 SVCWTDEDNNLLLQL  101 (104)
Q Consensus        87 g~pWTeeEhrlFL~~  101 (104)
                       -+||+||.++.+.|
T Consensus        63 -g~fT~eEe~~Ii~l   76 (238)
T KOG0048|consen   63 -GNFSDEEEDLIIKL   76 (238)
T ss_pred             -CCCCHHHHHHHHHH
Confidence             26999999998876

>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]

Probab=97.28  E-value=0.00048  Score=61.70  Aligned_cols=50  Identities=24%  Similarity=0.252  Sum_probs=43.5

Q ss_pred             CCCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHHHhh
Q 048152            7 VFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDL   61 (104)
Q Consensus         7 ~~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~~dV   61 (104)
                      .+..||..|.++|.+||.+|.+|    +.+|+..|+| ||+.+|.+.|-.-..|+
T Consensus       618 gSd~WTp~E~~lF~kA~y~~~KD----F~~v~km~~~-KtVaqCVeyYYtWKK~~  667 (907)
T KOG4167|consen  618 GSDKWTPLERKLFNKALYTYSKD----FIFVQKMVKS-KTVAQCVEYYYTWKKIM  667 (907)
T ss_pred             CcccccHHHHHHHHHHHHHhccc----HHHHHHHhcc-ccHHHHHHHHHHHHHhc
Confidence            46789999999999999999885    6999999999 99999999996554444

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=97.21  E-value=0.0007  Score=52.10  Aligned_cols=43  Identities=26%  Similarity=0.479  Sum_probs=38.2

Q ss_pred             CCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHH
Q 048152            8 FCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYV   55 (104)
Q Consensus         8 ~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk   55 (104)
                      ...||.||+.+.-++=+.|.-    ||..||..||| ||-.+|+.|..
T Consensus        62 rg~fT~eEe~~Ii~lH~~~GN----rWs~IA~~LPG-RTDNeIKN~Wn  104 (238)
T KOG0048|consen   62 RGNFSDEEEDLIIKLHALLGN----RWSLIAGRLPG-RTDNEVKNHWN  104 (238)
T ss_pred             CCCCCHHHHHHHHHHHHHHCc----HHHHHHhhCCC-cCHHHHHHHHH
Confidence            456999999999999999864    79999999999 99999987764

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=96.75  E-value=0.0046  Score=55.32  Aligned_cols=68  Identities=24%  Similarity=0.365  Sum_probs=53.2

Q ss_pred             CCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHHHhhhhhcCCCCCCccccCCCccccCCccc
Q 048152            8 FCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIESGKLDHKLAEFQPSVHVDCTQS   87 (104)
Q Consensus         8 ~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~~dV~~IEsG~v~~~~~~~~~~~~~erkkg   87 (104)
                      ...||.||+..| .|||.-++  ---|++||+.++..||.=+|..+|+.-+.-+..                     +  
T Consensus       253 k~~WS~EE~E~L-~AiA~A~~--~~~W~~IA~~Lgt~RS~yQC~~kF~t~~~~L~e---------------------k--  306 (939)
T KOG0049|consen  253 KEHWSNEEVEKL-KALAEAPK--FVSWPMIALNLGTNRSSYQCMEKFKTEVSQLSE---------------------K--  306 (939)
T ss_pred             hhccChHHHHHH-HHHHhccc--cccHHHHHHHhCCCcchHHHHHHHHHHHHHHHh---------------------h--
Confidence            456999999877 46665543  235999999998779999999999988777763                     1  


Q ss_pred             ccCCHHHHHHHhhhc
Q 048152           88 VCWTDEDNNLLLQLD  102 (104)
Q Consensus        88 ~pWTeeEhrlFL~~~  102 (104)
                       -|||||.+-+-+++
T Consensus       307 -eWsEEed~kL~alV  320 (939)
T KOG0049|consen  307 -EWSEEEDTKLIALV  320 (939)
T ss_pred             -hcchhhhHHHHHHH
Confidence             39999998887765

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=96.69  E-value=0.0029  Score=54.44  Aligned_cols=47  Identities=28%  Similarity=0.422  Sum_probs=42.2

Q ss_pred             CCCCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHH
Q 048152            6 KVFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVIL   57 (104)
Q Consensus         6 ~~~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L   57 (104)
                      +....||.+|.=+|-.|+-+|..    -|.+||..|++ ||.+||+-||-.|
T Consensus       251 ~~~~~WT~qE~lLLLE~ie~y~d----dW~kVa~hVg~-ks~eqCI~kFL~L  297 (506)
T KOG1279|consen  251 SARPNWTEQETLLLLEAIEMYGD----DWNKVADHVGT-KSQEQCILKFLRL  297 (506)
T ss_pred             cCCCCccHHHHHHHHHHHHHhcc----cHHHHHhccCC-CCHHHHHHHHHhc
Confidence            44567999999999999999964    59999999987 9999999999887

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=96.60  E-value=0.0013  Score=41.11  Aligned_cols=18  Identities=28%  Similarity=0.501  Sum_probs=15.2

Q ss_pred             cccccCCHHHHHHHhhhc
Q 048152           85 TQSVCWTDEDNNLLLQLD  102 (104)
Q Consensus        85 kkg~pWTeeEhrlFL~~~  102 (104)
                      ++...||+|||.+||.+.
T Consensus         1 k~r~~WT~eeh~~Fl~ai   18 (57)
T TIGR01557         1 KPRVVWTEDLHDRFLQAV   18 (57)
T ss_pred             CCCCCCCHHHHHHHHHHH
Confidence            356789999999999874

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=96.48  E-value=0.0075  Score=50.18  Aligned_cols=61  Identities=25%  Similarity=0.465  Sum_probs=48.4

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHHHhhhhhcCCCCCCc
Q 048152            3 DFPKVFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIESGKLDHK   72 (104)
Q Consensus         3 ~~~~~~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~~dV~~IEsG~v~~~   72 (104)
                      +.|-....|+.+|.-+|-.++....-|.   |+-||..|+. |+.+||+.||-.+.     +||...|+|
T Consensus        58 sypI~~e~WgadEEllli~~~~TlGlGN---W~dIadyiGs-r~kee~k~HylK~y-----~es~~ypl~  118 (432)
T COG5114          58 SYPIGEEGWGADEELLLIECLDTLGLGN---WEDIADYIGS-RAKEEIKSHYLKMY-----DESKYYPLP  118 (432)
T ss_pred             CccccCCCcCchHHHHHHHHHHhcCCCc---HHHHHHHHhh-hhhHHHHHHHHHHH-----hhccccccc
Confidence            3455567799999999999999886654   9999999986 99999999998763     344444443

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=95.91  E-value=0.02  Score=36.70  Aligned_cols=59  Identities=19%  Similarity=0.303  Sum_probs=41.8

Q ss_pred             CCCCHHHHHHHHHHHhh------cC--CCCC--chHHHHHHHcC---CCCCHHHHHHHHHHHHHhhhhhcCC
Q 048152            9 CGWSWEENKLFELALAV------VD--EQDP--HRWEVVAAMVG---GTKSAEDVQKHYVILLEDLQFIESG   67 (104)
Q Consensus         9 ~~WT~eE~k~fE~ALa~------~p--~~~p--dRWekIA~~vp---g~KS~~eV~~ryk~L~~dV~~IEsG   67 (104)
                      ..||.+|..+|-.+...      |.  ....  .-|+.||..+.   -.+|+.+|+.+++.|..+.+.+-..
T Consensus         2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Yk~~k~~   73 (90)
T PF13837_consen    2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKYKKIKDR   73 (90)
T ss_dssp             -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHCSSSS
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence            46999999999988877      21  1222  37999999873   2389999999999999999877543

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=95.80  E-value=0.026  Score=49.65  Aligned_cols=73  Identities=16%  Similarity=0.343  Sum_probs=56.5

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHHHhhhhhcCCCCCCccccCCCcccc
Q 048152            3 DFPKVFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIESGKLDHKLAEFQPSVHV   82 (104)
Q Consensus         3 ~~~~~~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~~dV~~IEsG~v~~~~~~~~~~~~~   82 (104)
                      +|....+.||.+|+..+-..-++...    .|..|+.+| | +.+.+|+.|+...+.      .|       .      .
T Consensus       379 ~FE~~rg~wt~ee~eeL~~l~~~~g~----~W~~Ig~~l-g-r~P~~crd~wr~~~~------~g-------~------~  433 (607)
T KOG0051|consen  379 PFENKRGKWTPEEEEELKKLVVEHGN----DWKEIGKAL-G-RMPMDCRDRWRQYVK------CG-------S------K  433 (607)
T ss_pred             ccccccCCCCcchHHHHHHHHHHhcc----cHHHHHHHH-c-cCcHHHHHHHHHhhc------cc-------c------c
Confidence            45557788999999998888777754    799999999 5 999999999887632      11       0      0


Q ss_pred             CCcccccCCHHHHHHHhhhc
Q 048152           83 DCTQSVCWTDEDNNLLLQLD  102 (104)
Q Consensus        83 erkkg~pWTeeEhrlFL~~~  102 (104)
                        ++.-+||-||-..+|+++
T Consensus       434 --~~r~~Ws~eEe~~Llk~V  451 (607)
T KOG0051|consen  434 --RNRGAWSIEEEEKLLKTV  451 (607)
T ss_pred             --cccCcchHHHHHHHHHHH
Confidence              123379999999999876

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=95.63  E-value=0.049  Score=34.53  Aligned_cols=56  Identities=18%  Similarity=0.247  Sum_probs=45.1

Q ss_pred             CCCCCHHHHHHHHHHHhhcCC---C----------CCchHHHHHHHc----CCCCCHHHHHHHHHHHHHhhhh
Q 048152            8 FCGWSWEENKLFELALAVVDE---Q----------DPHRWEVVAAMV----GGTKSAEDVQKHYVILLEDLQF   63 (104)
Q Consensus         8 ~~~WT~eE~k~fE~ALa~~p~---~----------~pdRWekIA~~v----pg~KS~~eV~~ryk~L~~dV~~   63 (104)
                      ...||.+|..+|-..+..|+.   +          ...-|+.||..|    |+.||..+|++.|..|...++.
T Consensus         2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~~Kk   74 (78)
T PF13873_consen    2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSKAKK   74 (78)
T ss_pred             CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH
Confidence            457999999999999998742   2          135799999887    3359999999999999887753

>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]

Probab=95.48  E-value=0.026  Score=48.58  Aligned_cols=49  Identities=16%  Similarity=0.236  Sum_probs=42.9

Q ss_pred             CCCCCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHH
Q 048152            5 PKVFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILL   58 (104)
Q Consensus         5 ~~~~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~   58 (104)
                      -.....||.||.-+||+|+..|.+    ++.+|-+++|- ||...+++.|-...
T Consensus       184 ~~~~d~WT~Ed~vlFe~aF~~~GK----~F~kIrq~LP~-rsLaSlvqyYy~~K  232 (534)
T KOG1194|consen  184 TEFPDEWTAEDIVLFEQAFQFFGK----DFHKIRQALPH-RSLASLVQYYYSWK  232 (534)
T ss_pred             CCCcccchHHHHHHHHHHHHHhcc----cHHHHHHHccC-ccHHHHHHHHHHHH
Confidence            334567999999999999999987    67999999999 99999999887653

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=95.32  E-value=0.025  Score=50.80  Aligned_cols=45  Identities=20%  Similarity=0.385  Sum_probs=40.6

Q ss_pred             CCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHH
Q 048152            9 CGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVIL   57 (104)
Q Consensus         9 ~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L   57 (104)
                      ..||.+||-+|-.|.+.|...   -|-+|-+.||| ||-.+|+.||-..
T Consensus       361 g~wt~~ED~~L~~AV~~Yg~k---dw~k~R~~vPn-RSdsQcR~RY~nv  405 (939)
T KOG0049|consen  361 GRWTDQEDVLLVCAVSRYGAK---DWAKVRQAVPN-RSDSQCRERYTNV  405 (939)
T ss_pred             CCCCCHHHHHHHHHHHHhCcc---chhhHHHhcCC-ccHHHHHHHHHHH
Confidence            459999999999999999753   49999999999 9999999999754

>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional

Probab=95.11  E-value=0.04  Score=50.95  Aligned_cols=56  Identities=25%  Similarity=0.403  Sum_probs=45.1

Q ss_pred             CCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHHHh----------hhhhcCC
Q 048152            8 FCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLED----------LQFIESG   67 (104)
Q Consensus         8 ~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~~d----------V~~IEsG   67 (104)
                      -+.||+-+-..|-+|.++|..+   --++||..|.| ||.+||++.++..-+-          +..||.|
T Consensus       824 f~~w~~~~f~~f~~~~~~~gr~---~~~~i~~~~~~-k~~~ev~~y~~~f~~~~~~~~~~~~~~~~ie~~  889 (1033)
T PLN03142        824 FSTWSRRDFNAFIRACEKYGRN---DIKSIASEMEG-KTEEEVERYAKVFWERYKELNDYDRIIKNIERG  889 (1033)
T ss_pred             cCcccHHHHHHHHHHHHHhCHh---HHHHHHHHhcC-CCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHH
Confidence            4569999999999999999864   37999999998 9999999766555332          4566666

>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices

Probab=94.78  E-value=0.11  Score=36.85  Aligned_cols=56  Identities=14%  Similarity=0.232  Sum_probs=45.9

Q ss_pred             CCCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCC-----------CCCHHHHHHHHHHHHHhhh
Q 048152            7 VFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGG-----------TKSAEDVQKHYVILLEDLQ   62 (104)
Q Consensus         7 ~~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg-----------~KS~~eV~~ryk~L~~dV~   62 (104)
                      ....+|.+||+.+-..+..|.-++++-|++|-..|-.           ++|+.++.+|...|+.-|.
T Consensus        48 ~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i~  114 (118)
T PF09111_consen   48 KKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKLIE  114 (118)
T ss_dssp             S-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHHHH
T ss_pred             CCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHHHH
Confidence            3467999999999999999999999999999987631           2899999999999976653

It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=93.01  E-value=0.06  Score=31.48  Aligned_cols=14  Identities=36%  Similarity=0.695  Sum_probs=11.9

Q ss_pred             cCCHHHHHHHhhhc
Q 048152           89 CWTDEDNNLLLQLD  102 (104)
Q Consensus        89 pWTeeEhrlFL~~~  102 (104)
                      +||+||+.+|+.++
T Consensus         3 ~Wt~eE~~~l~~~v   16 (48)
T PF00249_consen    3 PWTEEEDEKLLEAV   16 (48)
T ss_dssp             SS-HHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHH
Confidence            79999999999875

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=90.43  E-value=0.41  Score=42.05  Aligned_cols=53  Identities=19%  Similarity=0.367  Sum_probs=42.3

Q ss_pred             CCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHHHhhhhhcCC
Q 048152            9 CGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIESG   67 (104)
Q Consensus         9 ~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~~dV~~IEsG   67 (104)
                      ..||.+|+..+-.+...+|    ..|--||..| | +|..+|.+||..|+.....-..+
T Consensus        60 tews~eederlLhlakl~p----~qwrtIa~i~-g-r~~~qc~eRy~~ll~~~~s~~~~  112 (617)
T KOG0050|consen   60 TEWSREEDERLLHLAKLEP----TQWRTIADIM-G-RTSQQCLERYNNLLDVYVSYHYH  112 (617)
T ss_pred             hhhhhhHHHHHHHHHHhcC----CccchHHHHh-h-hhHHHHHHHHHHHHHHHHhhhcc
Confidence            4699999987766655554    4799999999 5 99999999999998877655443

>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=89.77  E-value=0.82  Score=39.07  Aligned_cols=46  Identities=15%  Similarity=0.350  Sum_probs=40.6

Q ss_pred             CCCCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHH
Q 048152            6 KVFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVI   56 (104)
Q Consensus         6 ~~~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~   56 (104)
                      +....||..|...|=+||.++.-+    +--|+..+|. |+..+|+..|..
T Consensus       363 ~~~~~Ws~~e~ekFYKALs~wGtd----F~LIs~lfP~-R~RkqIKaKfi~  408 (507)
T COG5118         363 KGALRWSKKEIEKFYKALSIWGTD----FSLISSLFPN-RERKQIKAKFIK  408 (507)
T ss_pred             CCCCcccHHHHHHHHHHHHHhcch----HHHHHHhcCc-hhHHHHHHHHHH
Confidence            346679999999999999999753    6899999999 999999999874

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=88.45  E-value=0.34  Score=26.60  Aligned_cols=15  Identities=40%  Similarity=0.802  Sum_probs=13.0

Q ss_pred             ccCCHHHHHHHhhhc
Q 048152           88 VCWTDEDNNLLLQLD  102 (104)
Q Consensus        88 ~pWTeeEhrlFL~~~  102 (104)
                      .+||++|..+|+.+.
T Consensus         2 ~~Wt~~E~~~l~~~~   16 (49)
T smart00717        2 GEWTEEEDELLIELV   16 (49)
T ss_pred             CCCCHHHHHHHHHHH
Confidence            589999999999864

>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains

Probab=88.40  E-value=0.92  Score=29.24  Aligned_cols=55  Identities=13%  Similarity=0.240  Sum_probs=41.7

Q ss_pred             CCCHHHHHHHHHHHhhc------C-CC--CCchHHHHHHHcC----CCCCHHHHHHHHHHHHHhhhhh
Q 048152           10 GWSWEENKLFELALAVV------D-EQ--DPHRWEVVAAMVG----GTKSAEDVQKHYVILLEDLQFI   64 (104)
Q Consensus        10 ~WT~eE~k~fE~ALa~~------p-~~--~pdRWekIA~~vp----g~KS~~eV~~ryk~L~~dV~~I   64 (104)
                      .||.++.+.|-.+|...      | .+  ++..|..|+..+-    ...|..+|+.||+.|..+-..+
T Consensus         1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~y~~~   68 (96)
T PF12776_consen    1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKDYRIW   68 (96)
T ss_pred             CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHH
Confidence            49999999998888653      2 11  2568999998763    2257899999999998887665

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=88.26  E-value=0.59  Score=41.07  Aligned_cols=47  Identities=17%  Similarity=0.365  Sum_probs=41.7

Q ss_pred             CCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHH
Q 048152            8 FCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILL   58 (104)
Q Consensus         8 ~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~   58 (104)
                      ...|+..|+.++.-|..+|+.   ..|-+||+.++- ||+.+|+.+|.+-+
T Consensus         7 ggvwrntEdeilkaav~kyg~---nqws~i~sll~~-kt~rqC~~rw~e~l   53 (617)
T KOG0050|consen    7 GGVWRNTEDEVLKAAVMKYGK---NQWSRIASLLNR-KTARQCKARWEEWL   53 (617)
T ss_pred             cceecccHHHHHHHHHHHcch---HHHHHHHHHHhh-cchhHHHHHHHHHh
Confidence            467999999999999999975   469999999997 99999999998653

>KOG4329 consensus DNA-binding protein [General function prediction only]

Probab=87.14  E-value=1  Score=38.24  Aligned_cols=46  Identities=26%  Similarity=0.407  Sum_probs=38.2

Q ss_pred             CCCCCCHHHHHHHHHHHhhcCCCCCchHHHH-HHHcCCCCCHHHHHHHHHHH
Q 048152            7 VFCGWSWEENKLFELALAVVDEQDPHRWEVV-AAMVGGTKSAEDVQKHYVIL   57 (104)
Q Consensus         7 ~~~~WT~eE~k~fE~ALa~~p~~~pdRWekI-A~~vpg~KS~~eV~~ryk~L   57 (104)
                      ..+.||.+|-+.||..|..|.++.    ..| |..|+. ||+-||+..|-.-
T Consensus       276 ~l~~wsEeEcr~FEegl~~yGKDF----~lIr~nkvrt-RsvgElVeyYYlW  322 (445)
T KOG4329|consen  276 DLSGWSEEECRNFEEGLELYGKDF----HLIRANKVRT-RSVGELVEYYYLW  322 (445)
T ss_pred             ccccCCHHHHHHHHHHHHHhcccH----HHHHhccccc-chHHHHHHHHHHh
Confidence            457899999999999999999854    444 567988 9999999887544

>smart00595 MADF subfamily of SANT domain

Probab=86.63  E-value=1.1  Score=28.59  Aligned_cols=57  Identities=25%  Similarity=0.365  Sum_probs=37.8

Q ss_pred             chHHHHHHHcCCCCCHHHHHHHHHHHHHhhh----hhcCCCCCCccccCCCccccCCcccccCCHHHHHHHhhhcc
Q 048152           32 HRWEVVAAMVGGTKSAEDVQKHYVILLEDLQ----FIESGKLDHKLAEFQPSVHVDCTQSVCWTDEDNNLLLQLDI  103 (104)
Q Consensus        32 dRWekIA~~vpg~KS~~eV~~ryk~L~~dV~----~IEsG~v~~~~~~~~~~~~~erkkg~pWTeeEhrlFL~~~~  103 (104)
                      .-|..||..++  .|+++|+.+.+.|..-..    .+..+...    +      .   ....|.=-++=.||.-.|
T Consensus        28 ~aW~~Ia~~l~--~~~~~~~~kw~~LR~~y~~e~~r~~~~~~~----~------~---~~~~w~~~~~m~FL~~~~   88 (89)
T smart00595       28 KAWEEIAEELG--LSVEECKKRWKNLRDRYRRELKRLQNGKSG----G------G---KKSKWEYFDRLSFLRPVI   88 (89)
T ss_pred             HHHHHHHHHHC--cCHHHHHHHHHHHHHHHHHHHHHHHHhhcc----C------C---CCCCchhhHhhhhHHHhc
Confidence            37999999994  799999999999954432    23222110    0      0   123588878888886544

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=86.37  E-value=1.1  Score=38.85  Aligned_cols=51  Identities=25%  Similarity=0.352  Sum_probs=43.1

Q ss_pred             CCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHHHhhhh
Q 048152            8 FCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQF   63 (104)
Q Consensus         8 ~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~~dV~~   63 (104)
                      ...||.+|++.+-.+=..++.    +|.-||..+|| +|...|..+|..+.++...
T Consensus        72 ~~~~~~eed~~li~l~~~~~~----~wstia~~~d~-rt~~~~~ery~~~~~~~~s  122 (512)
T COG5147          72 KKNWSEEEDEQLIDLDKELGT----QWSTIADYKDR-RTAQQCVERYVNTLEDLSS  122 (512)
T ss_pred             cccccHHHHHHHHHHHHhcCc----hhhhhccccCc-cchHHHHHHHHHHhhhhhc
Confidence            456999999887766666543    59999999999 9999999999999888776

>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics]

Probab=85.30  E-value=0.8  Score=40.16  Aligned_cols=45  Identities=24%  Similarity=0.283  Sum_probs=37.1

Q ss_pred             CCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHH
Q 048152            9 CGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVIL   57 (104)
Q Consensus         9 ~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L   57 (104)
                      .+||..|.-+||.||.+|.+|..|   -=+..+|= ||..++++.|-..
T Consensus       286 EEWSasEanLFEeALeKyGKDFnd---IrqdfLPW-KSl~sIveyYYmw  330 (693)
T KOG3554|consen  286 EEWSASEANLFEEALEKYGKDFND---IRQDFLPW-KSLTSIVEYYYMW  330 (693)
T ss_pred             hhccchhhHHHHHHHHHhcccHHH---HHHhhcch-HHHHHHHHHHHHH
Confidence            469999999999999999997654   33567888 9999999888655

>PF10545 MADF_DNA_bdg: Alcohol dehydrogenase transcription factor Myb/SANT-like; InterPro: IPR006578 The MADF (myb/SANT-like domain in Adf-1) domain is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats

Probab=84.85  E-value=1.7  Score=26.83  Aligned_cols=31  Identities=23%  Similarity=0.441  Sum_probs=26.0

Q ss_pred             chHHHHHHHcCCCCCHHHHHHHHHHHHHhhh
Q 048152           32 HRWEVVAAMVGGTKSAEDVQKHYVILLEDLQ   62 (104)
Q Consensus        32 dRWekIA~~vpg~KS~~eV~~ryk~L~~dV~   62 (104)
                      +-|+.||..+++.-++++|+++.+.|.....
T Consensus        27 ~aw~~Ia~~l~~~~~~~~~~~~w~~Lr~~y~   57 (85)
T PF10545_consen   27 EAWQEIARELGKEFSVDDCKKRWKNLRDRYR   57 (85)
T ss_pred             HHHHHHHHHHccchhHHHHHHHHHHHHHHHH
Confidence            4699999999864689999999999976554

The MADF domain is found in one or more copies in eukaryotic and viral proteins and is often associated with the BESS domain []. MADF is related to the Myb DNA-binding domain (IPR001005 from INTERPRO). The retroviral oncogene v-myb, and its cellular counterpart c-myb, are nuclear DNA-binding proteins that specifically recognise the sequence YAAC(G/T)G. It is likely that the MADF domain is more closely related to the myb/SANT domain than it is to other HTH domains. Some proteins known to contain a MADF domain are listed below: Drosophila Adf-1, a transcription factor first identified on the basis of its interaction with the alcohol dehydrogenase promoter but that binds the promoters of a diverse group of genes []. Drosophila Dorsal-interacting protein 3 (Dip3), which functions both as an activator to bind DNA in a sequence specific manner and a coactivator to stimulate synergistic activation by Dorsal and Twist []. Drosophila Stonewall (Stwl), a putative transcription factor required for maintenance of female germline stem cells as well as oocyte differentiation.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	104
2cjj_A	93	Crystal Structure Of The Myb Domain Of The Rad Tran		1e-12
4eef_G	74	Crystal Structure Of The Designed Inhibitor Protein		8e-05

>pdb|2CJJ|A Chain A, Crystal Structure Of The Myb Domain Of The Rad Transcription Factor From Antirrhinum Majus Length = 93

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/59 (55%), Positives = 44/59 (74%), Gaps = 1/59 (1%)
Query: 11 WSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIESGKL 69
          WS +ENK FE ALAV D+  P RW  VA  V G ++ E+V+KHY IL+ED+++IESGK+
Sbjct: 11 WSAKENKAFERALAVYDKDTPDRWANVARAVEG-RTPEEVKKHYEILVEDIKYIESGKV 68

>pdb|4EEF|G Chain G, Crystal Structure Of The Designed Inhibitor Protein F-Hb80.4 In Complex With The 1918 Influenza Virus Hemagglutinin. Length = 74

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 11 WSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHY 54
          W + EN  FE+AL+  ++  P RW+ VA  V G ++ E+V+KHY
Sbjct: 23 WKFSENIAFEIALSFTNKDTPDRWKKVAQYVKG-RTPEEVKKHY 65

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	104
2cjj_A	93	Radialis; plant development, DNA-binding protein,	1e-22
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	1e-18
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	3e-15
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	1e-06
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	3e-06
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	5e-05
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	3e-04
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	4e-04

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3 Length = 93

 Score = 83.0 bits (205), Expect = 1e-22
 Identities = 34/68 (50%), Positives = 44/68 (64%), Gaps = 1/68 (1%)

Query: 1  MEDFPKVFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLED 60
          M         WS +ENK FE ALAV D+  P RW  VA  V G ++ E+V+KHY IL+ED
Sbjct: 1  MASTRGSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEG-RTPEEVKKHYEILVED 59

Query: 61 LQFIESGK 68
          +++IESGK
Sbjct: 60 IKYIESGK 67

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene} Length = 74

 Score = 72.2 bits (177), Expect = 1e-18
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 1/62 (1%)

Query: 1  MEDFPKVFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLED 60
          M         W + EN  FE+AL+  ++  P RW+ VA  V G ++ E+V+KHY +    
Sbjct: 13 MASTRGSGRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKG-RTPEEVKKHYELEHHH 71

Query: 61 LQ 62
            
Sbjct: 72 HH 73

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 73

 Score = 63.7 bits (155), Expect = 3e-15
 Identities = 17/62 (27%), Positives = 23/62 (37%), Gaps = 1/62 (1%)

Query: 1  MEDFPKVFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLED 60
           E        W+  + KL ELAL          W+ +A  V   KS ED    Y +L+  
Sbjct: 11 KERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPS-KSKEDCIARYKLLVSG 69

Query: 61 LQ 62
            
Sbjct: 70 PS 71

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Length = 58

 Score = 41.3 bits (97), Expect = 1e-06
 Identities = 10/53 (18%), Positives = 18/53 (33%), Gaps = 3/53 (5%)

Query: 2  EDFPKVFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHY 54
                   W  +E  L    +   +      W  +A  VG  ++ E+ + HY
Sbjct: 3  SGSSGFDENWGADEELLL---IDACETLGLGNWADIADYVGNARTKEECRDHY 52

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72

 Score = 40.4 bits (94), Expect = 3e-06
 Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 2/44 (4%)

Query: 11 WSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHY 54
          W+ E+      ++       P RWE +A  +G  +S  DV    
Sbjct: 11 WTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG--RSVTDVTTKA 52

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75

 Score = 37.6 bits (87), Expect = 5e-05
 Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 3/46 (6%)

Query: 11 WSWEENKLFELALAVVDEQDP--HRWEVVAAMVGGTKSAEDVQKHY 54
          W+ EE K  E  L     ++    RW+ +A  + G ++A+ V    
Sbjct: 11 WTVEEQKKLEQLLIKYPPEEVESRRWQKIADEL-GNRTAKQVASQV 55

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60

 Score = 35.4 bits (82), Expect = 3e-04
 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 4/46 (8%)

Query: 9  CGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHY 54
            W+ +E       L  V +     W+ VA  +  TK+ E+ +KHY
Sbjct: 9  PSWTAQEEMAL---LEAVMDCGFGNWQDVANQMC-TKTKEECEKHY 50

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72

 Score = 35.2 bits (81), Expect = 4e-04
 Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 5/44 (11%)

Query: 11 WSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHY 54
          W+ EE +LFE  L     +   RW  ++ ++ G+++   V+ + 
Sbjct: 12 WTIEEKELFEQGL----AKFGRRWTKISKLI-GSRTVLQVKSYA 50

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	104
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	99.93
2cjj_A	93	Radialis; plant development, DNA-binding protein,	99.92
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	99.87
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	99.86
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.8
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.48
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.43
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	99.28
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	99.28
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	99.25
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.24
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	99.22
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.19
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.19
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.19
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.11
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.09
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.08
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.07
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	99.07
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.04
2crg_A	70	Metastasis associated protein MTA3; transcription	99.0
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	98.99
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	98.98
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	98.97
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	98.91
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	98.86
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	98.86
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.86
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	98.85
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	98.85
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	98.76
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	98.71
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	98.71
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	98.14
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	98.66
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	98.65
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	98.49
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	98.29
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	98.26
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	98.22
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	97.97
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	97.93
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	97.91
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	97.83
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	97.74
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	96.92
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	97.57
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	97.49
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	97.4
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	97.2
2y9y_A	374	Imitation switch protein 1 (DEL_ATPase); transcrip	96.77
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	96.72
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	96.27
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	96.25
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	95.66
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	95.04
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	94.58
2xb0_X	270	Chromo domain-containing protein 1; hydrolase, DNA	94.56
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	94.47
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	93.54
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	93.47
2crg_A	70	Metastasis associated protein MTA3; transcription	93.32
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	92.04
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	91.84
2y9y_A	374	Imitation switch protein 1 (DEL_ATPase); transcrip	90.95
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	89.33
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	89.31
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	88.58
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	88.3
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	87.97
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	87.91
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	87.0
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	86.23
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	86.14
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	85.38
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	84.4
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	83.52
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	83.31
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	82.74
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	81.38
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	80.92

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.93  E-value=9.2e-26  Score=146.49  Aligned_cols=66  Identities=20%  Similarity=0.292  Sum_probs=61.3

Q ss_pred             CCCCCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHHHhhhhhcCCCCCCcc
Q 048152            5 PKVFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIESGKLDHKL   73 (104)
Q Consensus         5 ~~~~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~~dV~~IEsG~v~~~~   73 (104)
                      .+....||.+|+++||+||++||.++|+||++||+++ | ||++||++||+.|++|+ .||+|+||+|.
T Consensus         5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-g-Rt~~eV~~~y~~L~~d~-~~~~G~vp~P~   70 (72)
T 2cqq_A            5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-G-RSVTDVTTKAKQLKDSV-TCSPGMVSGPS   70 (72)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-T-SCHHHHHHHHHHHHHSC-CCCSCCCSCSC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-C-CCHHHHHHHHHHHHHhc-CccCCCCCCCC
Confidence            3446679999999999999999999999999999998 8 99999999999999997 68999999884

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=99.92  E-value=3.5e-25  Score=150.00  Aligned_cols=72  Identities=47%  Similarity=0.713  Sum_probs=61.8

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHHHhhhhhcCCCCCCcc
Q 048152            1 MEDFPKVFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIESGKLDHKL   73 (104)
Q Consensus         1 ~~~~~~~~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~~dV~~IEsG~v~~~~   73 (104)
                      |-+..+....||.+|+++|++||++|+.++|+||++||++||| ||..||+.||+.|++||..||+|.||+|.
T Consensus         1 ~~~~~~~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpG-RT~~q~k~ry~~l~~dv~~iesg~vp~P~   72 (93)
T 2cjj_A            1 MASTRGSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEG-RTPEEVKKHYEILVEDIKYIESGKVPFPN   72 (93)
T ss_dssp             -------CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTT-CCHHHHHHHHHHHHHHHHHHHHSSCCC--
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHhhcCCCCCCC
Confidence            4556666778999999999999999999999999999999999 99999999999999999999999999884

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=99.87  E-value=5.2e-24  Score=139.60  Aligned_cols=54  Identities=35%  Similarity=0.668  Sum_probs=44.4

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHH
Q 048152            2 EDFPKVFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVI   56 (104)
Q Consensus         2 ~~~~~~~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~   56 (104)
                      -+....+..||.+|+|+||+||++||+++|+||++||++||| ||++||++||+.
T Consensus        14 ~s~~~ss~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpG-KT~eEVk~hY~~   67 (74)
T 4eef_G           14 ASTRGSGRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKG-RTPEEVKKHYEL   67 (74)
T ss_dssp             --------CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCS-SCHHHHHGGGC-
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCC-CCHHHHHHHHHH
Confidence            344555678999999999999999999999999999999999 999999999974

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.86  E-value=1.5e-22  Score=132.25  Aligned_cols=56  Identities=27%  Similarity=0.365  Sum_probs=51.1

Q ss_pred             CCCCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHHHhhh
Q 048152            6 KVFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQ   62 (104)
Q Consensus         6 ~~~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~~dV~   62 (104)
                      +....||.+|+++||+||+.||.++|+||++||++||| ||++||++||+.|..+..
T Consensus         6 ~~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~g-KT~eE~~~hY~~l~~~~~   61 (73)
T 1wgx_A            6 SGDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGS-RSPEECQRKYMENPRGKG   61 (73)
T ss_dssp             CSSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTT-SCHHHHHHHHHHSSSSSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCC-CCHHHHHHHHHHHHhccc
Confidence            45668999999999999999999999999999999999 999999999999955443

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.80  E-value=8.2e-20  Score=118.74  Aligned_cols=56  Identities=29%  Similarity=0.430  Sum_probs=52.7

Q ss_pred             CCCCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHHHhhh
Q 048152            6 KVFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQ   62 (104)
Q Consensus         6 ~~~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~~dV~   62 (104)
                      .....||.+|+++|+.||++|+.++|+||.+||++||| ||..||+.||+.|++||.
T Consensus        16 ~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpG-RT~~qcr~Ry~~L~~d~~   71 (73)
T 2cqr_A           16 SAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPS-KSKEDCIARYKLLVSGPS   71 (73)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSS-SCHHHHHHHHHHHHSSCC
T ss_pred             cCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCC-CCHHHHHHHHHHHHHccc
Confidence            34567999999999999999999999999999999999 999999999999999986

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.48  E-value=2.3e-14  Score=93.86  Aligned_cols=59  Identities=24%  Similarity=0.376  Sum_probs=54.4

Q ss_pred             CCCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHH-HHhhhhhcCCCCC
Q 048152            7 VFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVIL-LEDLQFIESGKLD   70 (104)
Q Consensus         7 ~~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L-~~dV~~IEsG~v~   70 (104)
                      ....||.+|+++|..|+.+|+    ++|.+||..||| ||..||+.||..| ++|+..+|+|.-|
T Consensus        17 ~~~~WT~eEd~~Ll~~v~~~G----~~W~~IA~~v~~-RT~~qcr~r~~~~~i~d~~~~~~~~~p   76 (79)
T 2yus_A           17 AGREWTEQETLLLLEALEMYK----DDWNKVSEHVGS-RTQDECILHFLRLPIEDPYLENSDSGP   76 (79)
T ss_dssp             CSCCCCHHHHHHHHHHHHHSS----SCHHHHHHHHSS-CCHHHHHHHHTTSCCCCSSCCCCCCCS
T ss_pred             cCCCcCHHHHHHHHHHHHHhC----CCHHHHHHHcCC-CCHHHHHHHHHHhcccccccccCCCCC
Confidence            356799999999999999998    689999999999 9999999999999 9999999998655

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.43  E-value=2.5e-13  Score=86.75  Aligned_cols=50  Identities=24%  Similarity=0.408  Sum_probs=44.6

Q ss_pred             CCCCCHHHHHHHHHHHhhcCCCC--CchHHHHHHHcCCCCCHHHHHHHHHHHH
Q 048152            8 FCGWSWEENKLFELALAVVDEQD--PHRWEVVAAMVGGTKSAEDVQKHYVILL   58 (104)
Q Consensus         8 ~~~WT~eE~k~fE~ALa~~p~~~--pdRWekIA~~vpg~KS~~eV~~ryk~L~   58 (104)
                      ...||.||+++|+.++..|+.++  +.+|.+||+.||| ||..||+.||...+
T Consensus         8 ~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~-Rt~~qcr~r~~~~l   59 (75)
T 2yum_A            8 NQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGN-RTAKQVASQVQKYF   59 (75)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSS-SCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence            45799999999999999999766  4899999999999 99999999994443

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=99.28  E-value=6.5e-12  Score=84.78  Aligned_cols=67  Identities=12%  Similarity=0.254  Sum_probs=55.5

Q ss_pred             CCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHHHhhhhhcCCCCCCccccCCCccccCCcccc
Q 048152            9 CGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIESGKLDHKLAEFQPSVHVDCTQSV   88 (104)
Q Consensus         9 ~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~~dV~~IEsG~v~~~~~~~~~~~~~erkkg~   88 (104)
                      ..||.+||.+|..++..|+.   .+|..||..||| ||..+|+.||...+.      .+              .   +.-
T Consensus         2 ~~Wt~eED~~L~~~v~~~g~---~~W~~Ia~~~~~-Rt~~qcr~Rw~~~L~------p~--------------i---~~~   54 (107)
T 2k9n_A            2 VKFTEEEDLKLQQLVMRYGA---KDWIRISQLMIT-RNPRQCRERWNNYIN------PA--------------L---RTD   54 (107)
T ss_dssp             CSSCHHHHHHHHHHHHHHCS---SCHHHHHHHTTT-SCHHHHHHHHHHHSS------SC--------------C---TTC
T ss_pred             CCCCHHHHHHHHHHHHHHCC---CCHHHHhhhcCC-CCHHHHHHHHHHHHc------cc--------------c---ccc
Confidence            46999999999999999974   479999999999 999999999986532      00              0   123


Q ss_pred             cCCHHHHHHHhhhc
Q 048152           89 CWTDEDNNLLLQLD  102 (104)
Q Consensus        89 pWTeeEhrlFL~~~  102 (104)
                      |||+||..+||.++
T Consensus        55 ~WT~eEd~~L~~~~   68 (107)
T 2k9n_A           55 PWSPEEDMLLDQKY   68 (107)
T ss_dssp             CCCHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHH
Confidence            89999999999875

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=99.28  E-value=4.8e-12  Score=84.62  Aligned_cols=68  Identities=19%  Similarity=0.411  Sum_probs=56.3

Q ss_pred             CCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHHHhhhhhcCCCCCCccccCCCccccCCccc
Q 048152            8 FCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIESGKLDHKLAEFQPSVHVDCTQS   87 (104)
Q Consensus         8 ~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~~dV~~IEsG~v~~~~~~~~~~~~~erkkg   87 (104)
                      ...||.+|+.+|..++..|+.   .+|..||..||| ||..+|+.||...+.          |             .-+.
T Consensus         4 k~~WT~eED~~L~~~v~~~g~---~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~----------p-------------~~~~   56 (105)
T 1gv2_A            4 KGPWTKEEDQRVIKLVQKYGP---KRWSVIAKHLKG-RIGKQCRERWHNHLN----------P-------------EVKK   56 (105)
T ss_dssp             CSCCCHHHHHHHHHHHHHHCT---TCHHHHHTTSTT-CCHHHHHHHHHHTTC----------C-------------CCCC
T ss_pred             CCCCCHHHHHHHHHHHHHhCC---CcHHHHhhhhcC-CCHHHHHHHHHhccC----------C-------------cccc
Confidence            457999999999999999974   469999999999 999999999987531          1             0113


Q ss_pred             ccCCHHHHHHHhhhc
Q 048152           88 VCWTDEDNNLLLQLD  102 (104)
Q Consensus        88 ~pWTeeEhrlFL~~~  102 (104)
                      .|||+||..+++.++
T Consensus        57 ~~Wt~eEd~~L~~~~   71 (105)
T 1gv2_A           57 TSWTEEEDRIIYQAH   71 (105)
T ss_dssp             CCCCHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHH
Confidence            489999999999874

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.25  E-value=2e-11  Score=75.82  Aligned_cols=46  Identities=17%  Similarity=0.321  Sum_probs=41.6

Q ss_pred             CCCCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHH
Q 048152            6 KVFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVI   56 (104)
Q Consensus         6 ~~~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~   56 (104)
                      .....||.+|+++|+.+|++|++    +|.+||..||| ||..+|+++|-.
T Consensus        10 ~~~~~WT~eE~~~F~~~~~~~gk----~w~~Ia~~l~~-rt~~~~v~~Yy~   55 (61)
T 2eqr_A           10 QFMNVWTDHEKEIFKDKFIQHPK----NFGLIASYLER-KSVPDCVLYYYL   55 (61)
T ss_dssp             SCCCSCCHHHHHHHHHHHHHSTT----CHHHHHHHCTT-SCHHHHHHHHHH
T ss_pred             ccCCCCCHHHHHHHHHHHHHhCC----CHHHHHHHcCC-CCHHHHHHHHHH
Confidence            34568999999999999999974    79999999999 999999999954

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.24  E-value=2.5e-11  Score=75.79  Aligned_cols=55  Identities=25%  Similarity=0.470  Sum_probs=50.7

Q ss_pred             CCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHHHhhhhhcCCC
Q 048152            8 FCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIESGK   68 (104)
Q Consensus         8 ~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~~dV~~IEsG~   68 (104)
                      ...||.||+.+|..+...|+.    +|.+||. +|| ||..+|+.||..++.....+++|.
T Consensus         9 k~~WT~eED~~L~~~~~~~g~----~W~~Ia~-~~g-Rt~~qcr~Rw~~~l~~~~~~~~~~   63 (66)
T 2din_A            9 KTEWSREEEEKLLHLAKLMPT----QWRTIAP-IIG-RTAAQCLEHYEFLLDKAAQRDSGP   63 (66)
T ss_dssp             CCCCCHHHHHHHHHHHHHCTT----CHHHHHH-HHS-SCHHHHHHHHHHHHHHHHHSSSCC
T ss_pred             CCCCCHHHHHHHHHHHHHcCC----CHHHHhc-ccC-cCHHHHHHHHHHHhChHhcCCCCC
Confidence            457999999999999999874    8999999 889 999999999999999999999884

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=99.22  E-value=2.6e-11  Score=83.85  Aligned_cols=69  Identities=17%  Similarity=0.362  Sum_probs=56.6

Q ss_pred             CCCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHHHhhhhhcCCCCCCccccCCCccccCCcc
Q 048152            7 VFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIESGKLDHKLAEFQPSVHVDCTQ   86 (104)
Q Consensus         7 ~~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~~dV~~IEsG~v~~~~~~~~~~~~~erkk   86 (104)
                      ....||.|||.+|..++..|+.   .+|..||..||| ||..+|+.||...+.          |             .-+
T Consensus        26 ~k~~Wt~eED~~L~~~v~~~g~---~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~----------p-------------~~~   78 (128)
T 1h8a_C           26 NKGPWTKEEDQRVIEHVQKYGP---KRWSDIAKHLKG-RIGKQCRERWHNHLN----------P-------------EVK   78 (128)
T ss_dssp             CCSCCCHHHHHHHHHHHHHTCS---CCHHHHHHHSSS-CCHHHHHHHHHHTTC----------S-------------SSC
T ss_pred             CCCCCCHHHHHHHHHHHHHHCC---CCHHHHHHHhcC-CcHHHHHHHHHHhcc----------c-------------ccc
Confidence            3467999999999999999974   469999999999 999999999987431          1             011


Q ss_pred             cccCCHHHHHHHhhhc
Q 048152           87 SVCWTDEDNNLLLQLD  102 (104)
Q Consensus        87 g~pWTeeEhrlFL~~~  102 (104)
                      .-|||+||..++|.++
T Consensus        79 ~~~WT~eEd~~L~~~~   94 (128)
T 1h8a_C           79 KTSWTEEEDRIIYQAH   94 (128)
T ss_dssp             CSCCCHHHHHHHHHHH
T ss_pred             cccCCHHHHHHHHHHH
Confidence            3489999999999874

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.19  E-value=3.6e-11  Score=83.26  Aligned_cols=67  Identities=22%  Similarity=0.385  Sum_probs=55.5

Q ss_pred             CCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHHHhhhhhcCCCCCCccccCCCccccCCccc
Q 048152            8 FCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIESGKLDHKLAEFQPSVHVDCTQS   87 (104)
Q Consensus         8 ~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~~dV~~IEsG~v~~~~~~~~~~~~~erkkg   87 (104)
                      ...||.|||.+|..++..|+.    .|..||..||| ||..+|+.||...+.          |  .        .  + .
T Consensus        11 k~~WT~eED~~L~~~v~~~G~----~W~~Ia~~~~~-Rt~~qcr~Rw~~~l~----------p--~--------~--~-~   62 (126)
T 3osg_A           11 KQKFTPEEDEMLKRAVAQHGS----DWKMIAATFPN-RNARQCRDRWKNYLA----------P--S--------I--S-H   62 (126)
T ss_dssp             SCCCCHHHHHHHHHHHHHHTT----CHHHHHHTCTT-CCHHHHHHHHHHHTS----------T--T--------S--C-C
T ss_pred             CCCCCHHHHHHHHHHHHHhCC----CHHHHHHHcCC-CCHHHHHHHHhhhcc----------c--c--------c--c-c
Confidence            457999999999999999964    69999999999 999999999997542          0  0        0  1 1


Q ss_pred             ccCCHHHHHHHhhhc
Q 048152           88 VCWTDEDNNLLLQLD  102 (104)
Q Consensus        88 ~pWTeeEhrlFL~~~  102 (104)
                      -|||+||..++|.++
T Consensus        63 ~~WT~eEd~~L~~~v   77 (126)
T 3osg_A           63 TPWTAEEDALLVQKI   77 (126)
T ss_dssp             SCCCHHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHH
Confidence            279999999999874

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.19  E-value=5e-11  Score=73.47  Aligned_cols=50  Identities=22%  Similarity=0.299  Sum_probs=44.0

Q ss_pred             CCCCCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHH
Q 048152            5 PKVFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILL   58 (104)
Q Consensus         5 ~~~~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~   58 (104)
                      +.....||.+|+++|..|+..|..   .+|.+||..||| ||..+|+.||...+
T Consensus         5 ~~~~~~WT~eED~~L~~~v~~~G~---~~W~~Ia~~~~~-Rt~~qcr~r~~~~l   54 (60)
T 1x41_A            5 SSGDPSWTAQEEMALLEAVMDCGF---GNWQDVANQMCT-KTKEECEKHYMKYF   54 (60)
T ss_dssp             CCCCSSSCHHHHHHHHHHHHHTCT---TCHHHHHHHHTT-SCHHHHHHHHHHHT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHCc---CcHHHHHHHhCC-CCHHHHHHHHHHHc
Confidence            344567999999999999999974   479999999999 99999999998764

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.19  E-value=6.8e-11  Score=72.63  Aligned_cols=51  Identities=22%  Similarity=0.361  Sum_probs=46.0

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcC-CCCCHHHHHHHHHHH
Q 048152            3 DFPKVFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVG-GTKSAEDVQKHYVIL   57 (104)
Q Consensus         3 ~~~~~~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vp-g~KS~~eV~~ryk~L   57 (104)
                      +||.....||.+|+.+|..++.+|..   .+|.+||..|| | ||..+|+.||..+
T Consensus         4 ~~p~~~~~WT~eED~~L~~~v~~~G~---~~W~~IA~~~~~~-Rt~~qcr~r~~~~   55 (58)
T 2elk_A            4 GSSGFDENWGADEELLLIDACETLGL---GNWADIADYVGNA-RTKEECRDHYLKT   55 (58)
T ss_dssp             CCCSCCCCCCHHHHHHHHHHHHHTTT---TCHHHHHHHHCSS-CCHHHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHHCCC-CCHHHHHHHHHHH
Confidence            57777889999999999999999963   47999999999 7 9999999999864

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.11  E-value=2.4e-10  Score=72.60  Aligned_cols=50  Identities=24%  Similarity=0.488  Sum_probs=45.0

Q ss_pred             CCCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHHHhh
Q 048152            7 VFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDL   61 (104)
Q Consensus         7 ~~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~~dV   61 (104)
                      ....||.||+.+|..++..|+.    +|..||..||| ||..+|+.||..++...
T Consensus         8 ~~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~~~~-Rt~~q~k~r~~~~l~~~   57 (72)
T 2cu7_A            8 YSVKWTIEEKELFEQGLAKFGR----RWTKISKLIGS-RTVLQVKSYARQYFKNK   57 (72)
T ss_dssp             CCCCCCHHHHHHHHHHHHHTCS----CHHHHHHHHSS-SCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHcCC-CCHHHHHHHHHHHHHHH
Confidence            3567999999999999999976    89999999999 99999999999886554

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.09  E-value=1.2e-10  Score=73.34  Aligned_cols=46  Identities=17%  Similarity=0.354  Sum_probs=41.7

Q ss_pred             CCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHH
Q 048152            8 FCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVIL   57 (104)
Q Consensus         8 ~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L   57 (104)
                      ...||.+|+.+|..++.+|..   .+|..||..||| ||..+|+.||...
T Consensus         9 ~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~l~~-Rt~~qcr~Rw~~~   54 (70)
T 2dim_A            9 GGVWRNTEDEILKAAVMKYGK---NQWSRIASLLHR-KSAKQCKARWYEW   54 (70)
T ss_dssp             TCCCCHHHHHHHHHHHHHTCS---SCHHHHHHHSTT-CCHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHhcC-CCHHHHHHHHHHH
Confidence            457999999999999999963   479999999999 9999999999875

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.08  E-value=6e-11  Score=82.53  Aligned_cols=67  Identities=12%  Similarity=0.304  Sum_probs=55.2

Q ss_pred             CCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHHHhhhhhcCCCCCCccccCCCccccCCcccc
Q 048152            9 CGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIESGKLDHKLAEFQPSVHVDCTQSV   88 (104)
Q Consensus         9 ~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~~dV~~IEsG~v~~~~~~~~~~~~~erkkg~   88 (104)
                      ..||.|||.+|..++..|+.   ..|..||..||| ||..+|+.||...+.-      +                -+ .-
T Consensus         3 g~Wt~eED~~L~~~v~~~g~---~~W~~Ia~~~~~-Rt~~qcr~Rw~~~l~p------~----------------~~-~~   55 (131)
T 3zqc_A            3 GPFTEAEDDLIREYVKENGP---QNWPRITSFLPN-RSPKQCRERWFNHLDP------A----------------VV-KH   55 (131)
T ss_dssp             SSCCHHHHHHHHHHHHHHCS---CCGGGGTTSCTT-SCHHHHHHHHHHHTST------T----------------CC-CS
T ss_pred             CCCCHHHHHHHHHHHHHhCc---CCHHHHHHHHCC-CCHHHHHHHHhhccCc------c----------------cc-CC
Confidence            57999999999999999963   369999999999 9999999999765421      0                01 12


Q ss_pred             cCCHHHHHHHhhhc
Q 048152           89 CWTDEDNNLLLQLD  102 (104)
Q Consensus        89 pWTeeEhrlFL~~~  102 (104)
                      |||+||..++|.++
T Consensus        56 ~Wt~eEd~~L~~~~   69 (131)
T 3zqc_A           56 AWTPEEDETIFRNY   69 (131)
T ss_dssp             CCCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHH
Confidence            89999999999875

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.07  E-value=2.9e-10  Score=67.68  Aligned_cols=47  Identities=17%  Similarity=0.380  Sum_probs=42.6

Q ss_pred             CCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHH
Q 048152            8 FCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILL   58 (104)
Q Consensus         8 ~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~   58 (104)
                      ...||.+|+.+|..++..|+.   .+|..||..||| ||..+|+.||..++
T Consensus         3 ~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~~~-Rt~~qcr~Rw~~~L   49 (52)
T 1guu_A            3 KTRWTREEDEKLKKLVEQNGT---DDWKVIANYLPN-RTDVQCQHRWQKVL   49 (52)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCS---SCHHHHHHTSTT-CCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHcCC-CCHHHHHHHHHHHc
Confidence            357999999999999999964   479999999999 99999999998875

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=99.07  E-value=8.9e-11  Score=93.25  Aligned_cols=91  Identities=19%  Similarity=0.249  Sum_probs=69.4

Q ss_pred             CCCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHHHhh----------hhhcCCCCCCcc---
Q 048152            7 VFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDL----------QFIESGKLDHKL---   73 (104)
Q Consensus         7 ~~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~~dV----------~~IEsG~v~~~~---   73 (104)
                      +-+.||..|...|.+|+++|+.   +.|++||+.|+| ||.+||+++|+.+.+.+          ..||.|...+..   
T Consensus       109 GF~~W~rrdf~~Fi~a~~kyGr---~~~~~IA~ev~~-Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~  184 (304)
T 1ofc_X          109 GFTAWTKRDFNQFIKANEKYGR---DDIDNIAKDVEG-KTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLS  184 (304)
T ss_dssp             SCTTCCHHHHHHHHHHHHHHCT---TCHHHHTTSSTT-CCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhcccCHHHHHHHHHHHHHhCH---HHHHHHHHHhcC-CCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence            3456999999999999999976   359999999999 99999999999999998          667777654331   


Q ss_pred             ---------c-cCCC----ccccCCcccccCCHHHHHHHhhh
Q 048152           74 ---------A-EFQP----SVHVDCTQSVCWTDEDNNLLLQL  101 (104)
Q Consensus        74 ---------~-~~~~----~~~~erkkg~pWTeeEhrlFL~~  101 (104)
                               . ...+    .-+-...+|.+||++|+|.||..
T Consensus       185 ~~~~l~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~  226 (304)
T 1ofc_X          185 IKKALDQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCM  226 (304)
T ss_dssp             HHHHHHHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHH
Confidence                     0 0000    00112347889999999998864

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.04  E-value=4.7e-10  Score=79.85  Aligned_cols=69  Identities=19%  Similarity=0.420  Sum_probs=56.8

Q ss_pred             CCCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHHHhhhhhcCCCCCCccccCCCccccCCcc
Q 048152            7 VFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIESGKLDHKLAEFQPSVHVDCTQ   86 (104)
Q Consensus         7 ~~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~~dV~~IEsG~v~~~~~~~~~~~~~erkk   86 (104)
                      ....||.+|+.+|..++..|+.   .+|..||..||| ||..+|+.||...+.          |             .-+
T Consensus        57 ~~~~Wt~eEd~~L~~~v~~~g~---~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~----------p-------------~~~  109 (159)
T 1h89_C           57 IKGPWTKEEDQRVIKLVQKYGP---KRWSVIAKHLKG-RIGKQCRERWHNHLN----------P-------------EVK  109 (159)
T ss_dssp             CCSCCCHHHHHHHHHHHHHHCS---CCHHHHHHTSTT-CCHHHHHHHHHHTTC----------T-------------TSC
T ss_pred             CCCCCChHHHHHHHHHHHHhCc---ccHHHHHHHcCC-CCHHHHHHHHHHHhC----------c-------------ccc
Confidence            3467999999999999999963   579999999999 999999999987531          0             012


Q ss_pred             cccCCHHHHHHHhhhc
Q 048152           87 SVCWTDEDNNLLLQLD  102 (104)
Q Consensus        87 g~pWTeeEhrlFL~~~  102 (104)
                      ..|||+||..++|.+.
T Consensus       110 ~~~WT~eEd~~L~~~~  125 (159)
T 1h89_C          110 KTSWTEEEDRIIYQAH  125 (159)
T ss_dssp             CSCCCHHHHHHHHHHH
T ss_pred             ccCCChHHHHHHHHHH
Confidence            3489999999999874

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=99.00  E-value=1e-09  Score=70.11  Aligned_cols=45  Identities=24%  Similarity=0.290  Sum_probs=41.3

Q ss_pred             CCCCCCCHHHHHHHHHHHhhcCCCCCchHHHHHH-HcCCCCCHHHHHHHHH
Q 048152            6 KVFCGWSWEENKLFELALAVVDEQDPHRWEVVAA-MVGGTKSAEDVQKHYV   55 (104)
Q Consensus         6 ~~~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~-~vpg~KS~~eV~~ryk   55 (104)
                      .....||.+|.++||.||+.|+++    |.+||. .||+ ||+.||+++|-
T Consensus         6 ~~~~~WT~eE~~~Fe~~l~~yGKd----f~~I~~~~v~~-Kt~~~~v~fYY   51 (70)
T 2crg_A            6 SGMEEWSASEACLFEEALEKYGKD----FNDIRQDFLPW-KSLTSIIEYYY   51 (70)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHTCSC----HHHHHHTTCSS-SCHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHHHhCcc----HHHHHHHHcCC-CCHHHHHHHHH
Confidence            456789999999999999999985    999999 6999 99999999996

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.99  E-value=9.1e-10  Score=68.89  Aligned_cols=43  Identities=16%  Similarity=0.233  Sum_probs=39.5

Q ss_pred             CCCCCHHHHHHHHHHHhhcCCCCCchHHHHHH-HcCCCCCHHHHHHHHH
Q 048152            8 FCGWSWEENKLFELALAVVDEQDPHRWEVVAA-MVGGTKSAEDVQKHYV   55 (104)
Q Consensus         8 ~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~-~vpg~KS~~eV~~ryk   55 (104)
                      ...||.+|.++||.||++|+++    |.+||. .||+ ||+.||++.|=
T Consensus         9 ~~~WT~eE~~~Fe~~l~~yGKd----f~~I~~~~v~~-Kt~~~~v~fYY   52 (63)
T 2yqk_A            9 EKCWTEDEVKRFVKGLRQYGKN----FFRIRKELLPN-KETGELITFYY   52 (63)
T ss_dssp             CCSCCHHHHHHHHHHHHHTCSC----HHHHHHHSCTT-SCHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHhCcc----HHHHHHHHcCC-CcHHHHHHHHh
Confidence            4579999999999999999984    999999 5998 99999999994

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=98.98  E-value=1.1e-09  Score=66.96  Aligned_cols=48  Identities=15%  Similarity=0.377  Sum_probs=42.6

Q ss_pred             CCCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHH
Q 048152            7 VFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILL   58 (104)
Q Consensus         7 ~~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~   58 (104)
                      ....||.|||.+|..++.+|..   .+|..||..||| ||..+|+.||..++
T Consensus         7 ~k~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~~~-Rt~~qcr~Rw~~~l   54 (60)
T 2d9a_A            7 GKVKWTHEEDEQLRALVRQFGQ---QDWKFLASHFPN-RTDQQCQYRWLRVL   54 (60)
T ss_dssp             CCSCCCHHHHHHHHHHHHHTCT---TCHHHHHHHCSS-SCHHHHHHHHHHTS
T ss_pred             CCCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHccC-CCHHHHHHHHHHHc
Confidence            3457999999999999999963   479999999999 99999999998753

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=98.97  E-value=6.5e-10  Score=66.28  Aligned_cols=46  Identities=17%  Similarity=0.341  Sum_probs=41.4

Q ss_pred             CCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHH
Q 048152            8 FCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVIL   57 (104)
Q Consensus         8 ~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L   57 (104)
                      ...||.+|+.+|..++.+|+.   .+|..||..||| ||..+|+.||...
T Consensus         3 k~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~~~-Rt~~qcr~Rw~~~   48 (52)
T 1gvd_A            3 KGPWTKEEDQRLIKLVQKYGP---KRWSVIAKHLKG-RIGKQCRERWHNH   48 (52)
T ss_dssp             CCSCCHHHHHHHHHHHHHHCT---TCHHHHHTTSTT-CCHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHHCc---ChHHHHHHHcCC-CCHHHHHHHHHHH
Confidence            357999999999999999963   469999999999 9999999999864

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=98.91  E-value=1.6e-10  Score=82.28  Aligned_cols=68  Identities=18%  Similarity=0.368  Sum_probs=22.2

Q ss_pred             CCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHHHhhhhhcCCCCCCccccCCCccccCCccc
Q 048152            8 FCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIESGKLDHKLAEFQPSVHVDCTQS   87 (104)
Q Consensus         8 ~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~~dV~~IEsG~v~~~~~~~~~~~~~erkkg   87 (104)
                      ...||.|||.+|..++.+|+.   ..|..||+.||| ||..+|+.||...+..      +                 -+.
T Consensus         6 k~~Wt~eED~~L~~~v~~~g~---~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p------~-----------------~~~   58 (159)
T 1h89_C            6 KTRWTREEDEKLKKLVEQNGT---DDWKVIANYLPN-RTDVQCQHRWQKVLNP------E-----------------LIK   58 (159)
T ss_dssp             -----------------------------------------CHHHHHHTTTCT------T-----------------CCC
T ss_pred             CCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHcCC-CCHHHHHHHHHHccCC------C-----------------cCC
Confidence            356999999999999999963   579999999999 9999999999865321      0                 112


Q ss_pred             ccCCHHHHHHHhhhc
Q 048152           88 VCWTDEDNNLLLQLD  102 (104)
Q Consensus        88 ~pWTeeEhrlFL~~~  102 (104)
                      .|||+||..+++.++
T Consensus        59 ~~Wt~eEd~~L~~~v   73 (159)
T 1h89_C           59 GPWTKEEDQRVIKLV   73 (159)
T ss_dssp             SCCCHHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHH
Confidence            489999999998875

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=98.86  E-value=6.1e-09  Score=62.40  Aligned_cols=46  Identities=15%  Similarity=0.386  Sum_probs=42.0

Q ss_pred             CCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcC--CCCCHHHHHHHHHHHH
Q 048152            9 CGWSWEENKLFELALAVVDEQDPHRWEVVAAMVG--GTKSAEDVQKHYVILL   58 (104)
Q Consensus         9 ~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vp--g~KS~~eV~~ryk~L~   58 (104)
                      ..||.||+.+|-.++..|..   ..|..||..+|  | ||..+|+.||..++
T Consensus         3 ~~WT~eEd~~L~~~v~~~G~---~~W~~Ia~~~~~~~-Rt~~qcr~Rw~~~~   50 (53)
T 1w0t_A            3 QAWLWEEDKNLRSGVRKYGE---GNWSKILLHYKFNN-RTSVMLKDRWRTMK   50 (53)
T ss_dssp             CCCCHHHHHHHHHHHHHHCT---TCHHHHHHHSCCSS-CCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCc---CCHHHHHHHcCCCC-CCHHHHHHHHHHHH
Confidence            57999999999999999963   47999999999  9 99999999999875

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=98.86  E-value=5.2e-09  Score=70.40  Aligned_cols=50  Identities=16%  Similarity=0.418  Sum_probs=45.7

Q ss_pred             CCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHHHhhh
Q 048152            8 FCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQ   62 (104)
Q Consensus         8 ~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~~dV~   62 (104)
                      ...||.||+.+|..++..|+.    +|..||..||| ||..+|+.||..|+..+.
T Consensus        53 ~~~WT~eEd~~L~~~~~~~G~----~W~~Ia~~l~g-Rt~~~~k~rw~~l~r~~~  102 (107)
T 2k9n_A           53 TDPWSPEEDMLLDQKYAEYGP----KWNKISKFLKN-RSDNNIRNRWMMIARHRA  102 (107)
T ss_dssp             TCCCCHHHHHHHHHHHHHTCS----CHHHHHHHHSS-SCHHHHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHHHHhCc----CHHHHHHHCCC-CCHHHHHHHHHHHHhhHH
Confidence            468999999999999999974    79999999999 999999999999987654

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.86  E-value=4.4e-09  Score=81.10  Aligned_cols=50  Identities=24%  Similarity=0.383  Sum_probs=44.9

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHH
Q 048152            2 EDFPKVFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVI   56 (104)
Q Consensus         2 ~~~~~~~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~   56 (104)
                      +.+++....||.+|+++|+.||++|.++    |.+||..||| ||+.+|+.||..
T Consensus       127 e~~~k~s~~WTeEE~~lFleAl~kYGKD----W~~IAk~VgT-KT~~QcKnfY~~  176 (235)
T 2iw5_B          127 EVIQKCNARWTTEEQLLAVQAIRKYGRD----FQAISDVIGN-KSVVQVKNFFVN  176 (235)
T ss_dssp             CCCCCCCSSCCHHHHHHHHHHHHHHSSC----HHHHHHHHSS-CCHHHHHHHHHH
T ss_pred             CCCCccCCCCCHHHHHHHHHHHHHHCcC----HHHHHHHcCC-CCHHHHHHHHHH
Confidence            3456678899999999999999999873    9999999999 999999999974

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=98.85  E-value=9.8e-09  Score=64.39  Aligned_cols=52  Identities=12%  Similarity=0.215  Sum_probs=42.8

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcC--CCCCHHHHHHHHHHHH
Q 048152            3 DFPKVFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVG--GTKSAEDVQKHYVILL   58 (104)
Q Consensus         3 ~~~~~~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vp--g~KS~~eV~~ryk~L~   58 (104)
                      +....-..||.|||.+|..++.+|..+   .|..||..+|  | ||..+|+.||..|+
T Consensus         6 ~~~~kk~~WT~eED~~L~~~V~~~G~~---~W~~Ia~~~~~~~-Rt~~qcr~Rw~nl~   59 (64)
T 3sjm_A            6 TNITKKQKWTVEESEWVKAGVQKYGEG---NWAAISKNYPFVN-RTAVMIKDRWRTMK   59 (64)
T ss_dssp             ----CCCCCCHHHHHHHHHHHHHHCTT---CHHHHHHHSCCSS-CCHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHccCCC---chHHHHhhcCCCC-CCHHHHHHHHHHHh
Confidence            344456689999999999999999643   5999999987  8 99999999999875

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=98.85  E-value=3.5e-09  Score=70.54  Aligned_cols=47  Identities=19%  Similarity=0.483  Sum_probs=42.9

Q ss_pred             CCCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHH
Q 048152            7 VFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILL   58 (104)
Q Consensus         7 ~~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~   58 (104)
                      ....||.+|+.+|..++..|+.    +|..||..||| ||..+|+.||..|+
T Consensus        55 ~~~~Wt~eEd~~L~~~~~~~G~----~W~~Ia~~l~g-Rt~~~~k~rw~~~~  101 (105)
T 1gv2_A           55 KKTSWTEEEDRIIYQAHKRLGN----RWAEIAKLLPG-RTDNAIKNHWNSTM  101 (105)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHSS----CHHHHHTTCTT-CCHHHHHHHHHHHT
T ss_pred             cccCCCHHHHHHHHHHHHHhCC----CHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence            3567999999999999999973    79999999999 99999999999874

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=98.76  E-value=1.9e-08  Score=69.44  Aligned_cols=50  Identities=18%  Similarity=0.476  Sum_probs=45.7

Q ss_pred             CCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHHHhhh
Q 048152            8 FCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQ   62 (104)
Q Consensus         8 ~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~~dV~   62 (104)
                      ...||.||+.+|..++..|+.    +|.+||..||| ||..+|+.||..|+..+.
T Consensus        62 ~~~WT~eEd~~L~~~v~~~G~----~W~~Ia~~l~g-Rt~~~~k~rw~~l~~k~~  111 (126)
T 3osg_A           62 HTPWTAEEDALLVQKIQEYGR----QWAIIAKFFPG-RTDIHIKNRWVTISNKLG  111 (126)
T ss_dssp             CSCCCHHHHHHHHHHHHHHCS----CHHHHHTTSTT-CCHHHHHHHHHHHHHHTT
T ss_pred             cccCCHHHHHHHHHHHHHHCc----CHHHHHHHcCC-CCHHHHHHHHHHHHHhcC
Confidence            457999999999999999974    69999999999 999999999999987765

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=98.71  E-value=3.9e-08  Score=61.71  Aligned_cols=48  Identities=15%  Similarity=0.356  Sum_probs=43.1

Q ss_pred             CCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcC--CCCCHHHHHHHHHHHHH
Q 048152            8 FCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVG--GTKSAEDVQKHYVILLE   59 (104)
Q Consensus         8 ~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vp--g~KS~~eV~~ryk~L~~   59 (104)
                      -..||.||+.+|-.++.+|..   ..|..||..+|  | ||..+|+.||..++.
T Consensus        10 r~~WT~eED~~L~~~v~~~G~---~~W~~Ia~~~~~~~-Rt~~qcr~Rw~~~l~   59 (69)
T 1ity_A           10 RQAWLWEEDKNLRSGVRKYGE---GNWSKILLHYKFNN-RTSVMLKDRWRTMKK   59 (69)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCS---SCHHHHHHHSCCSS-CCHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCC---CcHHHHHHHcCcCC-CCHHHHHHHHHHHcC
Confidence            457999999999999999963   47999999999  9 999999999998754

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=98.71  E-value=1e-08  Score=70.68  Aligned_cols=47  Identities=21%  Similarity=0.485  Sum_probs=42.7

Q ss_pred             CCCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHH
Q 048152            7 VFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILL   58 (104)
Q Consensus         7 ~~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~   58 (104)
                      ....||.||+.+|..++..|+.    +|.+||..||| ||..+|+.||..|+
T Consensus        78 ~~~~WT~eEd~~L~~~~~~~G~----~W~~Ia~~l~g-Rt~~~~k~r~~~~~  124 (128)
T 1h8a_C           78 KKTSWTEEEDRIIYQAHKRLGN----RWAEIAKLLPG-RTDNAVKNHWNSTM  124 (128)
T ss_dssp             CCSCCCHHHHHHHHHHHHHHCS----CHHHHGGGSTT-CCHHHHHHHHHTTT
T ss_pred             ccccCCHHHHHHHHHHHHHHCc----CHHHHHHHCCC-CCHHHHHHHHHHHH
Confidence            3567999999999999999974    79999999999 99999999998764

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=98.14  E-value=1.9e-09  Score=71.28  Aligned_cols=50  Identities=26%  Similarity=0.435  Sum_probs=43.7

Q ss_pred             CCCCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 048152            6 KVFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLED   60 (104)
Q Consensus         6 ~~~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~~d   60 (104)
                      .....||.+|+.+|..++..|+.    +|..||..||| ||..+|+.||..++.-
T Consensus        14 ~~~~~WT~eEd~~l~~~~~~~G~----~W~~IA~~l~g-Rt~~q~k~r~~~~lrk   63 (89)
T 2ltp_A           14 LYFQGWTEEEMGTAKKGLLEHGR----NWSAIARMVGS-KTVSQCKNFYFNYKKR   63 (89)
Confidence            34557999999999999999964    69999999999 9999999999877543

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=98.66  E-value=2.2e-08  Score=64.69  Aligned_cols=49  Identities=16%  Similarity=0.268  Sum_probs=43.5

Q ss_pred             CCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHHHhhh
Q 048152            8 FCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQ   62 (104)
Q Consensus         8 ~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~~dV~   62 (104)
                      ...||.||+++|..+.+.|..    +|.+||..+ | ||..+|+.||..|..++.
T Consensus        23 k~~wT~EED~~L~~l~~~~G~----kW~~IA~~l-g-Rt~~q~knRw~~L~~~~~   71 (73)
T 2llk_A           23 VGKYTPEEIEKLKELRIKHGN----DWATIGAAL-G-RSASSVKDRCRLMKDTCN   71 (73)
T ss_dssp             CCSSCHHHHHHHHHHHHHHSS----CHHHHHHHH-T-SCHHHHHHHHHHCSCCCS
T ss_pred             CCCCCHHHHHHHHHHHHHHCC----CHHHHHHHh-C-CCHHHHHHHHHHHHHHcc
Confidence            457999999999999999974    499999999 8 999999999999876543

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=98.65  E-value=3.8e-08  Score=65.98  Aligned_cols=44  Identities=16%  Similarity=0.314  Sum_probs=40.3

Q ss_pred             CCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHH
Q 048152            8 FCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVI   56 (104)
Q Consensus         8 ~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~   56 (104)
                      ...||.+|..+|+.+|..||+    .|.+||+.||+ ||+.||+.+|=.
T Consensus        43 ~~~WT~eE~~~F~~~~~~~gK----~F~~Ia~~l~~-Kt~~~cV~~YY~   86 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHPK----NFGLIASFLER-KTVAECVLYYYL   86 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHSTT----CHHHHHHTCTT-CCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCC----CHHHHHHHcCC-CCHHHHHHHHhc
Confidence            457999999999999999987    59999999999 999999999943

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=98.49  E-value=1.7e-07  Score=64.89  Aligned_cols=50  Identities=14%  Similarity=0.362  Sum_probs=44.3

Q ss_pred             CCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHHHhhh
Q 048152            8 FCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQ   62 (104)
Q Consensus         8 ~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~~dV~   62 (104)
                      ...||.+|+.+|..++..|+.    +|..||..||| ||..+|+.||..++.--.
T Consensus        54 ~~~Wt~eEd~~L~~~~~~~G~----~W~~Ia~~l~g-Rt~~~~k~rw~~~l~~~~  103 (131)
T 3zqc_A           54 KHAWTPEEDETIFRNYLKLGS----KWSVIAKLIPG-RTDNAIKNRWNSSISKRI  103 (131)
T ss_dssp             CSCCCHHHHHHHHHHHHHSCS----CHHHHTTTSTT-CCHHHHHHHHHHTTGGGC
T ss_pred             CCCCCHHHHHHHHHHHHHHCc----CHHHHHHHcCC-CCHHHHHHHHHHHHHHHh
Confidence            457999999999999999974    69999999999 999999999998865443

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=98.29  E-value=1.2e-06  Score=73.34  Aligned_cols=49  Identities=22%  Similarity=0.359  Sum_probs=43.6

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHH
Q 048152            3 DFPKVFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVI   56 (104)
Q Consensus         3 ~~~~~~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~   56 (104)
                      .+++.+..||.+|..+|..+|.+|.+    .|.+||..|+. ||+.+|+.||..
T Consensus       375 ~~~~~~~~WT~eE~~~f~~al~~yGk----dw~~IA~~VgT-KT~~Qvk~fy~~  423 (482)
T 2xag_B          375 VIQKCNARWTTEEQLLAVQAIRKYGR----DFQAISDVIGN-KSVVQVKNFFVN  423 (482)
T ss_dssp             CCCCCCSCCCHHHHHHHHHHHHHHTT----CHHHHHHHHSS-CCHHHHHHHHHH
T ss_pred             cccccCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHhCC-CCHHHHHHHHHH
Confidence            34556789999999999999999987    49999999988 999999999964

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=98.26  E-value=2.4e-06  Score=56.18  Aligned_cols=46  Identities=17%  Similarity=0.262  Sum_probs=42.2

Q ss_pred             CCCHHHHHHHHHHHhhcCCCCCchHHHHHHH----cCCCCCHHHHHHHHHHHHH
Q 048152           10 GWSWEENKLFELALAVVDEQDPHRWEVVAAM----VGGTKSAEDVQKHYVILLE   59 (104)
Q Consensus        10 ~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~----vpg~KS~~eV~~ryk~L~~   59 (104)
                      .||.||+.+|-.++.+|..   .+|.+|+..    ++| ||..+|+.||..|+.
T Consensus         2 ~WT~eEd~~L~~gv~k~G~---g~W~~I~~~~~~~~~~-RT~~~lKdrWrnllk   51 (83)
T 2ckx_A            2 PFSVAEVEALVEAVEHLGT---GRWRDVKMRAFDNADH-RTYVDLKDKWKTLVH   51 (83)
T ss_dssp             CCCHHHHHHHHHHHHHHCS---SCHHHHHHHHCTTCTT-SCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCC---CCcHHHHHhhccccCC-CCHHHHHHHHHHHHH
Confidence            6999999999999999975   379999996    899 999999999999975

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=98.22  E-value=4.7e-06  Score=58.47  Aligned_cols=72  Identities=14%  Similarity=0.127  Sum_probs=55.1

Q ss_pred             CCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHc----CCCCCHHHHHHHHHHHHHhhhhhcCCCCCCccccCCCccccC
Q 048152            8 FCGWSWEENKLFELALAVVDEQDPHRWEVVAAMV----GGTKSAEDVQKHYVILLEDLQFIESGKLDHKLAEFQPSVHVD   83 (104)
Q Consensus         8 ~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~v----pg~KS~~eV~~ryk~L~~dV~~IEsG~v~~~~~~~~~~~~~e   83 (104)
                      -..||.+|+.+|-.+..+|..   .+|..||...    +| ||..+|+.||..|+.--. |...                
T Consensus        17 r~~WT~EEd~~L~~gV~k~G~---G~W~~Ia~~~~~~f~~-RT~v~lKdRWrnllk~~~-~~p~----------------   75 (121)
T 2juh_A           17 RRPFSVAEVEALVEAVEHLGT---GRWRDVKMRAFDNADH-RTYVDLKDKWKTLVHTAS-IAPQ----------------   75 (121)
T ss_dssp             SCCCCHHHHHHHHHHHHHHGG---GCHHHHHHHHCSCCSS-CCSHHHHHHHHHHHHHHH-TCST----------------
T ss_pred             CCCCCHHHHHHHHHHHHHHCC---CCHHHHHHHhccccCC-CCHHHHHHHHHHHHhhhc-cCCc----------------
Confidence            456999999999999999964   4799999995    88 999999999999976422 2111                


Q ss_pred             CcccccCCHHHHHHHhh
Q 048152           84 CTQSVCWTDEDNNLLLQ  100 (104)
Q Consensus        84 rkkg~pWTeeEhrlFL~  100 (104)
                      -++|.||++++-...+.
T Consensus        76 ~krg~~~p~e~~~rv~~   92 (121)
T 2juh_A           76 QRRGEPVPQDLLDRVLA   92 (121)
T ss_dssp             TCCCSCCCHHHHHHHHH
T ss_pred             ccCCCCCCHHHHHHHHH
Confidence            12367899987544443

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.97  E-value=2.2e-05  Score=53.18  Aligned_cols=52  Identities=17%  Similarity=0.406  Sum_probs=44.5

Q ss_pred             CCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHHHhhh
Q 048152            9 CGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQ   62 (104)
Q Consensus         9 ~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~~dV~   62 (104)
                      -.||+++|+..-.+..+-.. +++.|..||..++. ||.+||..||++|+.-+.
T Consensus        34 vlWTRe~DR~IL~~cQ~~G~-s~~tFa~iA~~L~N-ks~nqV~~RFq~Lm~Lf~   85 (95)
T 1ug2_A           34 VLWTREADRVILTMCQEQGA-QPHTFSVISQQLGN-KTPVEVSHRFRELMQLFH   85 (95)
T ss_dssp             SSSCHHHHHHHHHHHHHTTS-CTTTHHHHHHHHSS-CCHHHHHHHHHHHHHHHH
T ss_pred             EEeccccCHHHHHHHHhcCC-ChhHHHHHHHHHcc-CCHHHHHHHHHHHHHHHH
Confidence            35999999988777776543 68999999999988 999999999999977664

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=97.93  E-value=2.8e-05  Score=49.00  Aligned_cols=51  Identities=16%  Similarity=0.249  Sum_probs=44.1

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhcCCCCCchHHHHH---HHcCCCCCHHHHHHHHHHHH
Q 048152            3 DFPKVFCGWSWEENKLFELALAVVDEQDPHRWEVVA---AMVGGTKSAEDVQKHYVILL   58 (104)
Q Consensus         3 ~~~~~~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA---~~vpg~KS~~eV~~ryk~L~   58 (104)
                      +.+.....||.||+..|.....+|..    .|..|+   ..++| ||..+++.+|..|.
T Consensus         3 ~~~~~r~~WT~EE~~~L~~gV~k~G~----~W~~I~~~y~f~~~-RT~VdLKdk~r~L~   56 (62)
T 1x58_A            3 SGSSGRKDFTKEEVNYLFHGVKTMGN----HWNSILWSFPFQKG-RRAVDLAHKYHRLI   56 (62)
T ss_dssp             CCCCCSSSCCHHHHHHHHHHHHHHCS----CHHHHHHHSCCCTT-CCHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHhH----hHHHHHHhCCCccC-cccchHHHHHHHHH
Confidence            34556678999999999999999964    699999   46788 99999999999984

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=97.91  E-value=1.8e-05  Score=54.15  Aligned_cols=49  Identities=16%  Similarity=0.243  Sum_probs=43.6

Q ss_pred             CCCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHc----CCCCCHHHHHHHHHHHHH
Q 048152            7 VFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMV----GGTKSAEDVQKHYVILLE   59 (104)
Q Consensus         7 ~~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~v----pg~KS~~eV~~ryk~L~~   59 (104)
                      ....||.||+.+|-.++.+|..   .+|..|+...    +| ||..+|+.+|..|+.
T Consensus        12 ~r~~WT~EEd~~L~~gV~k~G~---g~W~~I~~~~~~~f~~-RT~v~lKdrWrnllk   64 (105)
T 2aje_A           12 IRRPFSVAEVEALVQAVEKLGT---GRWRDVKLCAFEDADH-RTYVDLKDKWKTLVH   64 (105)
T ss_dssp             CCCSCCHHHHHHHHHHHHHHCS---SSHHHHHSSSSSSTTC-CCHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCC---CChHHHHHHhccccCC-CCHHHHHHHHHHHHh
Confidence            4567999999999999999975   3699999976    78 999999999999974

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=97.83  E-value=3.8e-05  Score=53.85  Aligned_cols=48  Identities=17%  Similarity=0.223  Sum_probs=42.9

Q ss_pred             CCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHc----CCCCCHHHHHHHHHHHHH
Q 048152            8 FCGWSWEENKLFELALAVVDEQDPHRWEVVAAMV----GGTKSAEDVQKHYVILLE   59 (104)
Q Consensus         8 ~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~v----pg~KS~~eV~~ryk~L~~   59 (104)
                      ...||.||+.+|-.+..+|..   .+|..|+...    +| ||..+|+.+|..|+.
T Consensus        31 r~~WT~EEd~~L~~gV~k~G~---g~W~~I~~~~~~~~~~-RT~vdlKdRWrnllk   82 (122)
T 2roh_A           31 RRPFTVAEVELLVEAVEHLGT---GRWRDVKFRAFENVHH-RTYVDLKDKWKTLVH   82 (122)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSS---SCHHHHHHHHHSSSCC-CCHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCC---CChHHHHHHhccccCC-CCHHHHHHHHHHHHh
Confidence            457999999999999999975   4799999985    88 999999999999975

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=97.74  E-value=8.7e-05  Score=49.93  Aligned_cols=51  Identities=20%  Similarity=0.248  Sum_probs=45.5

Q ss_pred             CCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHc-----CCCCCHHHHHHHHHHHHHhhhhh
Q 048152            9 CGWSWEENKLFELALAVVDEQDPHRWEVVAAMV-----GGTKSAEDVQKHYVILLEDLQFI   64 (104)
Q Consensus         9 ~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~v-----pg~KS~~eV~~ryk~L~~dV~~I   64 (104)
                      ..||.||...|=....+|+.    ||-.|+...     ++ ||+++++.||-.++.-+...
T Consensus        31 ~~WTkEETd~Lf~L~~~fdl----RW~vI~DRy~~~~~~~-Rt~EdLK~RyY~v~~~l~~~   86 (93)
T 3hm5_A           31 DAWTKAETDHLFDLSRRFDL----RFVVIHDRYDHQQFKK-RSVEDLKERYYHICAKLANV   86 (93)
T ss_dssp             TTBCHHHHHHHHHHHHHTTT----CHHHHHHHSCTTTSCC-CCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhCC----CeeeehhhhccCCCCC-CCHHHHHHHHHHHHHHHHHh
Confidence            68999999999999999987    999999999     56 99999999999998766543

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=96.92  E-value=4.3e-06  Score=53.91  Aligned_cols=51  Identities=14%  Similarity=0.310  Sum_probs=41.7

Q ss_pred             CCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHHHhhh
Q 048152            9 CGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQ   62 (104)
Q Consensus         9 ~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~~dV~   62 (104)
                      -.||+|||+..-.+..+-.. +++.|..||..+ + ||.+||..||++|+.-+.
T Consensus        15 vlWTReeDR~IL~~cq~~G~-s~~tfa~iA~~L-n-ks~~QV~~RF~~Lm~Lf~   65 (70)
T 2lr8_A           15 ILWTRNDDRVILLECQKRGP-SSKTFAYLAAKL-D-KNPNQVSERFQQLMKLFE   65 (70)
Confidence            35999999987666655432 578999999999 7 999999999999976553

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=97.57  E-value=5.9e-05  Score=58.49  Aligned_cols=52  Identities=8%  Similarity=0.193  Sum_probs=44.0

Q ss_pred             CCCCCHHHHHHHHHHHhhcCCC--CCchHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 048152            8 FCGWSWEENKLFELALAVVDEQ--DPHRWEVVAAMVGGTKSAEDVQKHYVILLED   60 (104)
Q Consensus         8 ~~~WT~eE~k~fE~ALa~~p~~--~pdRWekIA~~vpg~KS~~eV~~ryk~L~~d   60 (104)
                      ...||.|||.++-.+..+|+..  +..-|..||..||| ||..+|+.||..++..
T Consensus         8 k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpG-RT~nsIRnRw~~~L~~   61 (246)
T 1ign_A            8 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPN-HTGNSIRHRFRVYLSK   61 (246)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTT-SCHHHHHHHHHHTTGG
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCC-CCHHHHHHHHHHHHhh
Confidence            4579999999999999999753  22239999999999 9999999999986544

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=97.49  E-value=1.5e-05  Score=66.69  Aligned_cols=43  Identities=26%  Similarity=0.422  Sum_probs=0.0

Q ss_pred             CCCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHH
Q 048152            7 VFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHY   54 (104)
Q Consensus         7 ~~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ry   54 (104)
                      ....||.+|.++|+.+|..|+++    |.+|+..||+ ||+.+|+++|
T Consensus       188 ~~d~WT~eE~~lFe~al~~yGKd----F~~I~~~lp~-Ksv~e~V~yY  230 (482)
T 2xag_B          188 FPDEWTVEDKVLFEQAFSFHGKT----FHRIQQMLPD-KSIASLVKFY  230 (482)
T ss_dssp             ------------------------------------------------
T ss_pred             cccccCHHHHHHHHHHHHHcCcc----HHHHHHHcCC-CCHHHHHHHh
Confidence            34579999999999999999985    7999999999 9999999885

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=97.40  E-value=0.00039  Score=50.58  Aligned_cols=52  Identities=17%  Similarity=0.144  Sum_probs=44.1

Q ss_pred             CCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHH--cCCCCCHHHHHHHHHHHHHhh
Q 048152            8 FCGWSWEENKLFELALAVVDEQDPHRWEVVAAM--VGGTKSAEDVQKHYVILLEDL   61 (104)
Q Consensus         8 ~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~--vpg~KS~~eV~~ryk~L~~dV   61 (104)
                      ...||..|-+.|.+|+.+|+ ...+||+.|++.  +.+ ||.++|+..|+.+..-+
T Consensus         7 ~~~~t~~E~r~fira~~kfG-~~~~r~~~I~~da~L~~-Ks~~~v~~y~~~f~~~c   60 (211)
T 4b4c_A            7 IKGFSDAEIRRFIKSYKKFG-GPLERLDAIARDAELVD-KSETDLRRLGELVHNGC   60 (211)
T ss_dssp             -CCSCHHHHHHHHHHHTTCS-SGGGCHHHHHHHTTCTT-SCHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHC-CchhHHHHHHHHhccCC-CCHHHHHHHHHHHHHHH
Confidence            45799999999999999996 245899999975  778 99999999888887664

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.20  E-value=0.00023  Score=43.54  Aligned_cols=25  Identities=16%  Similarity=0.213  Sum_probs=21.0

Q ss_pred             CccccCCcccccCCHHHHHHHhhhc
Q 048152           78 PSVHVDCTQSVCWTDEDNNLLLQLD  102 (104)
Q Consensus        78 ~~~~~erkkg~pWTeeEhrlFL~~~  102 (104)
                      +++..+|+...|||+|||++|+.+.
T Consensus         3 ~~~~~~r~~~~~WT~eE~~~F~~~~   27 (61)
T 2eqr_A            3 SGSSGDRQFMNVWTDHEKEIFKDKF   27 (61)
T ss_dssp             CSCCCCCSCCCSCCHHHHHHHHHHH
T ss_pred             CccccccccCCCCCHHHHHHHHHHH
Confidence            3456788899999999999999864

>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A

Probab=96.77  E-value=0.0049  Score=50.14  Aligned_cols=53  Identities=19%  Similarity=0.286  Sum_probs=44.7

Q ss_pred             CCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcC-CCCCHHHHHHHHHHHHHhhhhh
Q 048152            8 FCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVG-GTKSAEDVQKHYVILLEDLQFI   64 (104)
Q Consensus         8 ~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vp-g~KS~~eV~~ryk~L~~dV~~I   64 (104)
                      -..||.-|=..|-+|+++|..   +.-+.||+.|. | ||.+||.+.++.+.+-...|
T Consensus       123 F~~WnrrDF~~FI~a~~kyGR---~d~~~IA~ev~~~-Kt~eEV~~Y~~vFw~Ry~Ei  176 (374)
T 2y9y_A          123 FTNWNKLEFRKFITVSGKYGR---NSIQAIARELAPG-KTLEEVRAYAKAFWSNIERI  176 (374)
T ss_dssp             CCCSCHHHHHHHHHHHHHHCT---TCHHHHHSSCCCS-SSHHHHHHHHHHHHHTCSSC
T ss_pred             hcccCHHHHHHHHHHHHHhCH---hHHHHHHHHHccC-CCHHHHHHHHHHHHHhhhhh
Confidence            356999999999999999987   34789999998 6 99999998888886655443

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=96.72  E-value=0.0059  Score=41.02  Aligned_cols=53  Identities=19%  Similarity=0.219  Sum_probs=45.1

Q ss_pred             CCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcC----CCCCHHHHHHHHHHHHHhhhhh
Q 048152            8 FCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVG----GTKSAEDVQKHYVILLEDLQFI   64 (104)
Q Consensus         8 ~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vp----g~KS~~eV~~ryk~L~~dV~~I   64 (104)
                      ...||.+|-..|=.....|+.    ||--|+....    +.||++|++.||-.++..+...
T Consensus        30 ~~~WT~eETd~LfdLc~~fdl----Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~   86 (93)
T 4iej_A           30 DDAWTKAETDHLFDLSRRFDL----RFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANV   86 (93)
T ss_dssp             BTTBCHHHHHHHHHHHHHTTT----CHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCC----CeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            357999999999999999987    9999999975    1399999999999998777644

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=96.27  E-value=0.011  Score=36.10  Aligned_cols=47  Identities=6%  Similarity=0.131  Sum_probs=40.6

Q ss_pred             CCCCHHHHHHHHHHHhhcCCC-----CCchHHHHHH-HcCCCCCHHHHHHHHHH
Q 048152            9 CGWSWEENKLFELALAVVDEQ-----DPHRWEVVAA-MVGGTKSAEDVQKHYVI   56 (104)
Q Consensus         9 ~~WT~eE~k~fE~ALa~~p~~-----~pdRWekIA~-~vpg~KS~~eV~~ryk~   56 (104)
                      ..+|.|||.++-.-++.|...     ...-|..+|+ .+|+ .|...++.||..
T Consensus         3 ~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~-HtwqSwRdRy~k   55 (59)
T 1fex_A            3 IAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQ-HSWQSLKDRYLK   55 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSS-CCSHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCC-CCHHHHHHHHHH
Confidence            469999999999999998432     3468999999 8999 999999999975

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=96.25  E-value=0.016  Score=37.00  Aligned_cols=62  Identities=15%  Similarity=0.256  Sum_probs=48.8

Q ss_pred             CCCCCCCHHHHHHHHHHHhh----cC--CCCCchHHHHHHHcC---CCCCHHHHHHHHHHHHHhhhhhcCC
Q 048152            6 KVFCGWSWEENKLFELALAV----VD--EQDPHRWEVVAAMVG---GTKSAEDVQKHYVILLEDLQFIESG   67 (104)
Q Consensus         6 ~~~~~WT~eE~k~fE~ALa~----~p--~~~pdRWekIA~~vp---g~KS~~eV~~ryk~L~~dV~~IEsG   67 (104)
                      +....||.+|-++|-.+...    |.  ......|+.||..|-   -.+|+.+|+.+++.|...-+.|...
T Consensus         2 kR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk~~k~~   72 (86)
T 2ebi_A            2 KRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFKKAKHH   72 (86)
T ss_dssp             CCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCSCSSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence            34678999999999998865    22  223458999999864   1399999999999999998877654

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=95.66  E-value=0.025  Score=44.73  Aligned_cols=54  Identities=13%  Similarity=0.156  Sum_probs=47.4

Q ss_pred             CCCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcC------------CCCCHHHHHHHHHHHHHhh
Q 048152            7 VFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVG------------GTKSAEDVQKHYVILLEDL   61 (104)
Q Consensus         7 ~~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vp------------g~KS~~eV~~ryk~L~~dV   61 (104)
                      ....||.+||+.|-.+|-+|.-+.++-|++|-..|.            . +|+.+|.+|+..|+.-|
T Consensus       211 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kS-RTp~el~rRc~tLi~~i  276 (304)
T 1ofc_X          211 KGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKS-RTALELQRRCNTLITLI  276 (304)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHT-CCHHHHHHHHHHHHHHH
T ss_pred             CCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhc-CCHHHHHHHHHHHHHHH
Confidence            456899999999999999999989999999985543            4 99999999999997665

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.04  E-value=0.014  Score=35.73  Aligned_cols=18  Identities=17%  Similarity=0.541  Sum_probs=14.8

Q ss_pred             CcccccCCHHHHHHHhhh
Q 048152           84 CTQSVCWTDEDNNLLLQL  101 (104)
Q Consensus        84 rkkg~pWTeeEhrlFL~~  101 (104)
                      +.+..+||+|||++|+.+
T Consensus         6 ~~~~~~WT~eE~~~Fe~~   23 (63)
T 2yqk_A            6 SGIEKCWTEDEVKRFVKG   23 (63)
T ss_dssp             CCCCCSCCHHHHHHHHHH
T ss_pred             CcCCCCcCHHHHHHHHHH
Confidence            444678999999999875

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=94.58  E-value=0.12  Score=39.96  Aligned_cols=40  Identities=5%  Similarity=0.018  Sum_probs=28.7

Q ss_pred             hHHHHHHHcCCCCCHHHHHHHHHHHHHhh----------hhhcCCCCCCcc
Q 048152           33 RWEVVAAMVGGTKSAEDVQKHYVILLEDL----------QFIESGKLDHKL   73 (104)
Q Consensus        33 RWekIA~~vpg~KS~~eV~~ryk~L~~dV----------~~IEsG~v~~~~   73 (104)
                      .|..||+.+|+ +|....+.||..++.+.          ..++.|.+|.|+
T Consensus       173 ~fk~ia~~~P~-HT~~SWRdRyrKfl~~~gi~~yi~yye~~~~~~~~p~~~  222 (246)
T 1ign_A          173 FFKHFAEEHAA-HTENAWRDRFRKFLLAYGIDDYISYYEAEKAQNREPEPM  222 (246)
T ss_dssp             HHHHHHHHTTT-SCHHHHHHHHHHTHHHHCHHHHHHHHHTC-------CCC
T ss_pred             HHHHHHHHCCC-CChhhHHHHHHHHHhhcChHHHHHHHHHHHhcCCCCccc
Confidence            89999999999 99999999999887665          224788888775

>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A

Probab=94.56  E-value=0.099  Score=40.57  Aligned_cols=52  Identities=15%  Similarity=0.032  Sum_probs=42.6

Q ss_pred             CCCCHHHHHHHHHHHhhcCCCCCchHHHHHHH--cCCCCCHHHHHHHHHHHHHhhh
Q 048152            9 CGWSWEENKLFELALAVVDEQDPHRWEVVAAM--VGGTKSAEDVQKHYVILLEDLQ   62 (104)
Q Consensus         9 ~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~--vpg~KS~~eV~~ryk~L~~dV~   62 (104)
                      ..||..|.+.|-+|+.+|+. ..+||+.|+..  ++. |+.+.+++-|..|++-+.
T Consensus         4 ~~ltekEiR~l~Ra~~kfG~-~~~R~e~I~~dA~L~~-ks~~~i~~~~~~li~~c~   57 (270)
T 2xb0_X            4 GSIGESEVRALYKAILKFGN-LKEILDELIADGTLPV-KSFEKYGETYDEMMEAAK   57 (270)
T ss_dssp             CCCCHHHHHHHHHHHHHHSS-CTTCHHHHHHTTSSCC-CCHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhCC-HHHHHHHHHHhccccc-CCHHHHHHHHHHHHHHHH
Confidence            45999999999999999962 45699999754  677 999999998888865543

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=94.47  E-value=0.27  Score=30.70  Aligned_cols=56  Identities=18%  Similarity=0.165  Sum_probs=42.2

Q ss_pred             CCCCCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHH--cCCCCCHHHHHHHHHHHHHhhh
Q 048152            5 PKVFCGWSWEENKLFELALAVVDEQDPHRWEVVAAM--VGGTKSAEDVQKHYVILLEDLQ   62 (104)
Q Consensus         5 ~~~~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~--vpg~KS~~eV~~ryk~L~~dV~   62 (104)
                      .+..-.||.|....|-.|+.++.. .---+.+|...  |+| .|...|+.|.+.---.++
T Consensus         4 ~k~r~~WT~elH~~Fv~Av~~LG~-~~AtPk~Il~~M~v~g-LT~~~VkSHLQKYR~~l~   61 (64)
T 1irz_A            4 KKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDK-LTRENVASHLQKFRVALK   61 (64)
T ss_dssp             CCSSCSSCHHHHHHHHHHHHHHCT-TTCCHHHHHHHHCCTT-CCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCcCCHHHHHHHHHHHHHhCC-CCCCcHHHHHHcCCCC-CCHHHHHHHHHHHHHHHH
Confidence            344557999999999999999862 33346777776  567 899999999876654444

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=93.54  E-value=0.047  Score=34.94  Aligned_cols=20  Identities=25%  Similarity=0.453  Sum_probs=16.0

Q ss_pred             CCcccccCCHHHHHHHhhhc
Q 048152           83 DCTQSVCWTDEDNNLLLQLD  102 (104)
Q Consensus        83 erkkg~pWTeeEhrlFL~~~  102 (104)
                      ......+||+||+.+||.++
T Consensus        14 ~~~~~~~WT~eEd~~Ll~~v   33 (79)
T 2yus_A           14 GASAGREWTEQETLLLLEAL   33 (79)
T ss_dssp             SSCCSCCCCHHHHHHHHHHH
T ss_pred             ccccCCCcCHHHHHHHHHHH
Confidence            34446799999999999875

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=93.47  E-value=0.04  Score=34.54  Aligned_cols=20  Identities=30%  Similarity=0.351  Sum_probs=17.0

Q ss_pred             CCcccccCCHHHHHHHhhhc
Q 048152           83 DCTQSVCWTDEDNNLLLQLD  102 (104)
Q Consensus        83 erkkg~pWTeeEhrlFL~~~  102 (104)
                      .++..+.||+|.|+.|+.|+
T Consensus         3 ~~k~r~~WT~elH~~Fv~Av   22 (64)
T 1irz_A            3 QKKPRVLWTHELHNKFLAAV   22 (64)
T ss_dssp             CCCSSCSSCHHHHHHHHHHH
T ss_pred             CCCCCCcCCHHHHHHHHHHH
Confidence            35667899999999999986

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=93.32  E-value=0.045  Score=34.25  Aligned_cols=18  Identities=11%  Similarity=0.265  Sum_probs=15.0

Q ss_pred             CcccccCCHHHHHHHhhh
Q 048152           84 CTQSVCWTDEDNNLLLQL  101 (104)
Q Consensus        84 rkkg~pWTeeEhrlFL~~  101 (104)
                      |+...+||+||+++|+.+
T Consensus         5 r~~~~~WT~eE~~~Fe~~   22 (70)
T 2crg_A            5 SSGMEEWSASEACLFEEA   22 (70)
T ss_dssp             CCSSCCCCHHHHHHHHHH
T ss_pred             ccCCCCCCHHHHHHHHHH
Confidence            455668999999999975

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.04  E-value=0.061  Score=33.33  Aligned_cols=14  Identities=43%  Similarity=0.522  Sum_probs=12.8

Q ss_pred             cCCHHHHHHHhhhc
Q 048152           89 CWTDEDNNLLLQLD  102 (104)
Q Consensus        89 pWTeeEhrlFL~~~  102 (104)
                      +||+||+.+|+.++
T Consensus        10 ~WT~eEd~~L~~~v   23 (75)
T 2yum_A           10 LWTVEEQKKLEQLL   23 (75)
T ss_dssp             CCCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHH
Confidence            79999999999875

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=91.84  E-value=0.075  Score=32.85  Aligned_cols=16  Identities=44%  Similarity=0.443  Sum_probs=13.7

Q ss_pred             cccCCHHHHHHHhhhc
Q 048152           87 SVCWTDEDNNLLLQLD  102 (104)
Q Consensus        87 g~pWTeeEhrlFL~~~  102 (104)
                      ..|||+||+.+||.++
T Consensus         9 ~~~WT~eEd~~l~~~~   24 (72)
T 2cu7_A            9 SVKWTIEEKELFEQGL   24 (72)
T ss_dssp             CCCCCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHH
Confidence            3489999999999874

>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A

Probab=90.95  E-value=0.6  Score=37.92  Aligned_cols=54  Identities=19%  Similarity=0.185  Sum_probs=47.4

Q ss_pred             CCCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHc------------CCCCCHHHHHHHHHHHHHhh
Q 048152            7 VFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMV------------GGTKSAEDVQKHYVILLEDL   61 (104)
Q Consensus         7 ~~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~v------------pg~KS~~eV~~ryk~L~~dV   61 (104)
                      ....||.+||+.|-.+|-+|.-+.++-|++|-..|            -. +|+.++.+|+..|+.-|
T Consensus       227 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kS-RT~~EL~rRc~tLi~~I  292 (374)
T 2y9y_A          227 NKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRS-RTPVELARRGNTLLQCL  292 (374)
T ss_dssp             SCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHT-CCHHHHHHHHHHHHHHH
T ss_pred             CCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhc-CCHHHHHHHHHHHHHHH
Confidence            45679999999999999999988889999997774            34 89999999999998665

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=89.33  E-value=0.15  Score=33.52  Aligned_cols=17  Identities=6%  Similarity=0.327  Sum_probs=13.9

Q ss_pred             cccccCCHHHHHHHhhh
Q 048152           85 TQSVCWTDEDNNLLLQL  101 (104)
Q Consensus        85 kkg~pWTeeEhrlFL~~  101 (104)
                      .-..+||+|||++|..+
T Consensus        41 ~~~~~WT~eE~~~F~~~   57 (94)
T 4a69_C           41 QVMNMWSEQEKETFREK   57 (94)
T ss_dssp             HHTCCCCHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHH
Confidence            34567999999999875

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=89.31  E-value=0.26  Score=31.08  Aligned_cols=19  Identities=21%  Similarity=0.240  Sum_probs=15.1

Q ss_pred             CcccccCCHHHHHHHhhhc
Q 048152           84 CTQSVCWTDEDNNLLLQLD  102 (104)
Q Consensus        84 rkkg~pWTeeEhrlFL~~~  102 (104)
                      +....+||.||.++|+.|.
T Consensus        15 ~~~~~~WT~eEd~~L~~al   33 (73)
T 2cqr_A           15 RSAEEPWTQNQQKLLELAL   33 (73)
T ss_dssp             TCSSCCCCHHHHHHHHHHH
T ss_pred             ccCCCCCCHHHHHHHHHHH
Confidence            3345689999999999874

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=88.58  E-value=0.15  Score=32.87  Aligned_cols=18  Identities=11%  Similarity=0.017  Sum_probs=12.3

Q ss_pred             CcccccCCHHHHHHHhhh
Q 048152           84 CTQSVCWTDEDNNLLLQL  101 (104)
Q Consensus        84 rkkg~pWTeeEhrlFL~~  101 (104)
                      +..+.+||.+|+++|..|
T Consensus        17 ~~ss~~WT~eE~K~FE~A   34 (74)
T 4eef_G           17 RGSGRPWKFSENIAFEIA   34 (74)
T ss_dssp             -----CCCTTHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHH
Confidence            334678999999999987

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=88.30  E-value=0.2  Score=29.77  Aligned_cols=14  Identities=21%  Similarity=0.515  Sum_probs=12.7

Q ss_pred             cCCHHHHHHHhhhc
Q 048152           89 CWTDEDNNLLLQLD  102 (104)
Q Consensus        89 pWTeeEhrlFL~~~  102 (104)
                      +||+||..+||.++
T Consensus        11 ~WT~eED~~L~~~v   24 (58)
T 2elk_A           11 NWGADEELLLIDAC   24 (58)
T ss_dssp             CCCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHH
Confidence            79999999999875

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=87.97  E-value=0.22  Score=29.68  Aligned_cols=15  Identities=27%  Similarity=0.494  Sum_probs=13.2

Q ss_pred             ccCCHHHHHHHhhhc
Q 048152           88 VCWTDEDNNLLLQLD  102 (104)
Q Consensus        88 ~pWTeeEhrlFL~~~  102 (104)
                      .+||+||..+||.++
T Consensus         9 ~~WT~eED~~L~~~v   23 (60)
T 1x41_A            9 PSWTAQEEMALLEAV   23 (60)
T ss_dssp             SSSCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHH
Confidence            479999999999875

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=87.91  E-value=0.28  Score=30.85  Aligned_cols=16  Identities=31%  Similarity=0.405  Sum_probs=13.6

Q ss_pred             cccCCHHHHHHHhhhc
Q 048152           87 SVCWTDEDNNLLLQLD  102 (104)
Q Consensus        87 g~pWTeeEhrlFL~~~  102 (104)
                      +-+||.||+++|..|.
T Consensus         8 ~~~WT~eE~k~fe~al   23 (72)
T 2cqq_A            8 APEWTEEDLSQLTRSM   23 (72)
T ss_dssp             CCCCCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHH
Confidence            4479999999999874

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=87.00  E-value=1.2  Score=34.21  Aligned_cols=19  Identities=26%  Similarity=0.302  Sum_probs=15.9

Q ss_pred             CCcccccCCHHHHHHHhhh
Q 048152           83 DCTQSVCWTDEDNNLLLQL  101 (104)
Q Consensus        83 erkkg~pWTeeEhrlFL~~  101 (104)
                      .++.+.+||+||+++|+++
T Consensus       129 ~~k~s~~WTeEE~~lFleA  147 (235)
T 2iw5_B          129 IQKCNARWTTEEQLLAVQA  147 (235)
T ss_dssp             CCCCCSSCCHHHHHHHHHH
T ss_pred             CCccCCCCCHHHHHHHHHH
Confidence            3456779999999999986

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=86.23  E-value=0.32  Score=27.91  Aligned_cols=15  Identities=33%  Similarity=0.605  Sum_probs=13.1

Q ss_pred             ccCCHHHHHHHhhhc
Q 048152           88 VCWTDEDNNLLLQLD  102 (104)
Q Consensus        88 ~pWTeeEhrlFL~~~  102 (104)
                      -|||+||..+|+.++
T Consensus         4 ~~Wt~eED~~L~~~v   18 (52)
T 1gvd_A            4 GPWTKEEDQRLIKLV   18 (52)
T ss_dssp             CSCCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHH
Confidence            389999999999875

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=86.14  E-value=0.32  Score=27.81  Aligned_cols=15  Identities=33%  Similarity=0.578  Sum_probs=13.1

Q ss_pred             ccCCHHHHHHHhhhc
Q 048152           88 VCWTDEDNNLLLQLD  102 (104)
Q Consensus        88 ~pWTeeEhrlFL~~~  102 (104)
                      .|||.||..+|+.++
T Consensus         4 ~~Wt~eED~~L~~~v   18 (52)
T 1guu_A            4 TRWTREEDEKLKKLV   18 (52)
T ss_dssp             CCCCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHH
Confidence            489999999999875

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=85.38  E-value=0.36  Score=30.73  Aligned_cols=14  Identities=14%  Similarity=0.257  Sum_probs=12.3

Q ss_pred             ccCCHHHHHHHhhh
Q 048152           88 VCWTDEDNNLLLQL  101 (104)
Q Consensus        88 ~pWTeeEhrlFL~~  101 (104)
                      -+||++|+++|+.+
T Consensus         9 ~~WT~eE~k~fe~A   22 (73)
T 1wgx_A            9 KEWNEKELQKLHCA   22 (73)
T ss_dssp             SCCCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHH
Confidence            47999999999875

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=84.40  E-value=5.6  Score=28.30  Aligned_cols=50  Identities=18%  Similarity=0.266  Sum_probs=39.1

Q ss_pred             CCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcC------------CCC--CHHHHHHHHHHHHHhh
Q 048152            8 FCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVG------------GTK--SAEDVQKHYVILLEDL   61 (104)
Q Consensus         8 ~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vp------------g~K--S~~eV~~ryk~L~~dV   61 (104)
                      ++.||.++|+.|=..+.+|.-+   +|+.|-...-            . |  ++.++.+|...|+.-+
T Consensus       134 ~~~W~~~~D~~LL~Gi~k~G~g---~w~~Ir~D~~l~~~~k~~~~~~~-k~p~a~~L~rR~~~Ll~~l  197 (211)
T 4b4c_A          134 DIDWGKEDDSNLLIGIYEYGYG---SWEMIKMDPDLSLTHKILPDDPD-KKPQAKQLQTRADYLIKLL  197 (211)
T ss_dssp             SSCCCHHHHHHHHHHHHHHCTT---CHHHHHHCSSSSCTTTSSCSSTT-SSCCHHHHHHHHHHHHHHH
T ss_pred             CCCccHHHHHHHHHHHHHHCcC---cHHHHHhChhcCccccccccccc-cCCChHHHHHHHHHHHHHH
Confidence            5679999999999999999754   4999987431            2 3  3678999998887655

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=83.52  E-value=0.49  Score=27.86  Aligned_cols=15  Identities=40%  Similarity=0.627  Sum_probs=13.2

Q ss_pred             ccCCHHHHHHHhhhc
Q 048152           88 VCWTDEDNNLLLQLD  102 (104)
Q Consensus        88 ~pWTeeEhrlFL~~~  102 (104)
                      .|||+||..+|+.++
T Consensus         9 ~~Wt~eED~~L~~~v   23 (60)
T 2d9a_A            9 VKWTHEEDEQLRALV   23 (60)
T ss_dssp             SCCCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHH
Confidence            489999999999875

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=83.31  E-value=0.59  Score=26.95  Aligned_cols=15  Identities=20%  Similarity=0.173  Sum_probs=13.0

Q ss_pred             ccCCHHHHHHHhhhc
Q 048152           88 VCWTDEDNNLLLQLD  102 (104)
Q Consensus        88 ~pWTeeEhrlFL~~~  102 (104)
                      -|||+||..+++.++
T Consensus         3 ~~WT~eEd~~L~~~v   17 (53)
T 1w0t_A            3 QAWLWEEDKNLRSGV   17 (53)
T ss_dssp             CCCCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHH
Confidence            489999999998875

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=82.74  E-value=0.83  Score=27.68  Aligned_cols=20  Identities=15%  Similarity=0.152  Sum_probs=15.9

Q ss_pred             CCcccccCCHHHHHHHhhhc
Q 048152           83 DCTQSVCWTDEDNNLLLQLD  102 (104)
Q Consensus        83 erkkg~pWTeeEhrlFL~~~  102 (104)
                      .+++-.|||+||-.+++.++
T Consensus         6 ~~~~r~~WT~eED~~L~~~v   25 (69)
T 1ity_A            6 RARKRQAWLWEEDKNLRSGV   25 (69)
T ss_dssp             CSSSCCCCCHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHH
Confidence            34556689999999999875

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=81.38  E-value=0.66  Score=27.87  Aligned_cols=15  Identities=33%  Similarity=0.696  Sum_probs=13.0

Q ss_pred             ccCCHHHHHHHhhhc
Q 048152           88 VCWTDEDNNLLLQLD  102 (104)
Q Consensus        88 ~pWTeeEhrlFL~~~  102 (104)
                      .|||+||..+++.++
T Consensus        10 ~~WT~eED~~L~~~~   24 (66)
T 2din_A           10 TEWSREEEEKLLHLA   24 (66)
T ss_dssp             CCCCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHH
Confidence            489999999999874

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=80.92  E-value=0.36  Score=31.09  Aligned_cols=16  Identities=19%  Similarity=0.129  Sum_probs=13.5

Q ss_pred             cccCCHHHHHHHhhhc
Q 048152           87 SVCWTDEDNNLLLQLD  102 (104)
Q Consensus        87 g~pWTeeEhrlFL~~~  102 (104)
                      .-|||+||..+|+.++
T Consensus        16 ~~~WT~eEd~~l~~~~   31 (89)
T 2ltp_A           16 FQGWTEEEMGTAKKGL   31 (89)
Confidence            3489999999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	104
d2cqqa1	59	a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1	6e-13
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	1e-11
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	3e-05

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 59

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.3 bits (136), Expect = 6e-13
 Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 3/57 (5%)

Query: 11 WSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIESG 67
          W+ E+      ++       P RWE +A  +G  +S  DV      L + +     G
Sbjct: 4  WTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG--RSVTDVTTKAKQLKDSV-TCSPG 57

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 53.4 bits (128), Expect = 1e-11
 Identities = 33/59 (55%), Positives = 44/59 (74%), Gaps = 1/59 (1%)

Query: 11 WSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIESGKL 69
          WS +ENK FE ALAV D+  P RW  VA  V G ++ E+V+KHY IL+ED+++IESGK+
Sbjct: 4  WSAKENKAFERALAVYDKDTPDRWANVARAVEG-RTPEEVKKHYEILVEDIKYIESGKV 61

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (85), Expect = 3e-05
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 11 WSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVIL 57
          W+  + KL ELAL          W+ +A  V   KS ED    Y +L
Sbjct: 15 WTQNQQKLLELALQQYPRGSSDCWDKIARCVPS-KSKEDCIARYKLL 60

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	104
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.9
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.87
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.65
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.15
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.13
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	99.12
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	99.0
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	98.99
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	98.97
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	98.9
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	98.89
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	98.79
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	98.74
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	98.65
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	98.59
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	98.53
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	98.2
d1ofcx1	52	SANT domain of the nucleosome remodeling ATPase IS	97.84
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	96.75
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	95.86
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	94.29
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	92.93
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	86.0
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	85.66
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	85.23
d1ofcx2	128	SLIDE domain of the nucleosome remodeling ATPase I	85.05
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	81.51

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.90  E-value=6.2e-24  Score=132.17  Aligned_cols=62  Identities=53%  Similarity=0.877  Sum_probs=60.3

Q ss_pred             CCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHHHhhhhhcCCCCCC
Q 048152            9 CGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIESGKLDH   71 (104)
Q Consensus         9 ~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~~dV~~IEsG~v~~   71 (104)
                      ++||.+|+++|..|++.|+.+.+++|.+||..||| ||..||+.||+.|++||+.||+|+||+
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~g-Rt~~qc~~r~~~L~~dik~iesg~vpf   63 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVEG-RTPEEVKKHYEILVEDIKYIESGKVPF   63 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTT-CCHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcCC-CCHHHHHHHHHHHHHHhhccccCCCCC
Confidence            57999999999999999999999999999999999 999999999999999999999999985

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=7.9e-23  Score=127.31  Aligned_cols=59  Identities=22%  Similarity=0.362  Sum_probs=54.3

Q ss_pred             CCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHHHhhhhhcCCCC
Q 048152            8 FCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQFIESGKL   69 (104)
Q Consensus         8 ~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~~dV~~IEsG~v   69 (104)
                      +..||.+|+++||+||++||+++|+||++||++| | ||++||+.||+.|.+++ .+.+|.|
T Consensus         1 a~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~v-g-kt~~ev~~~~k~l~e~~-~~~~g~v   59 (59)
T d2cqqa1           1 APEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-G-RSVTDVTTKAKQLKDSV-TCSPGMV   59 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-T-SCHHHHHHHHHHHHHSC-CCCSCCC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH-C-CCHHHHHHHHHHHHHhc-ccCCCCC
Confidence            3679999999999999999999999999999999 7 99999999999999998 4666654

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1e-16  Score=98.11  Aligned_cols=51  Identities=31%  Similarity=0.472  Sum_probs=47.8

Q ss_pred             CCCCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHH
Q 048152            6 KVFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVIL   57 (104)
Q Consensus         6 ~~~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L   57 (104)
                      .....||.+||++|..|+..|+.+++.+|.+||..||| ||..||+.||+.|
T Consensus        10 ~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~~-Rt~~qc~~R~~~L   60 (60)
T d2cqra1          10 SAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPS-KSKEDCIARYKLL   60 (60)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSS-SCHHHHHHHHHHH
T ss_pred             cCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcCC-CCHHHHHHHHHHC
Confidence            34567999999999999999999999999999999999 9999999999987

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=4.5e-11  Score=69.75  Aligned_cols=44  Identities=25%  Similarity=0.382  Sum_probs=39.8

Q ss_pred             CCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHH
Q 048152            9 CGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVI   56 (104)
Q Consensus         9 ~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~   56 (104)
                      +.||.+|+.+|..|+.+|+.+   .|.+||..||| ||..+|+.||..
T Consensus         2 ~~Wt~eEd~~L~~~v~~~G~~---nW~~Ia~~~~~-Rt~~Qcr~r~~~   45 (47)
T d1x41a1           2 PSWTAQEEMALLEAVMDCGFG---NWQDVANQMCT-KTKEECEKHYMK   45 (47)
T ss_dssp             SSSCHHHHHHHHHHHHHTCTT---CHHHHHHHHTT-SCHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCc---cHHHHHHHcCC-CCHHHHHHHHHH
Confidence            459999999999999999643   59999999999 999999999974

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=6.4e-11  Score=72.22  Aligned_cols=48  Identities=25%  Similarity=0.531  Sum_probs=43.4

Q ss_pred             CCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 048152            8 FCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLED   60 (104)
Q Consensus         8 ~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~~d   60 (104)
                      +..||.||+.+|..++..|+.    .|..||..||| ||..+|+.||..++..
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~~~~-Rt~~q~k~ry~~~~~~   49 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFGR----RWTKISKLIGS-RTVLQVKSYARQYFKN   49 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCS----CHHHHHHHHSS-SCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhcc----hHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence            567999999999999999974    69999999999 9999999999877654

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=5.7e-11  Score=72.75  Aligned_cols=47  Identities=21%  Similarity=0.350  Sum_probs=42.5

Q ss_pred             CCCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHH
Q 048152            7 VFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILL   58 (104)
Q Consensus         7 ~~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~   58 (104)
                      ..+.||.+|+.+|..+|..|+.    .|..||+.||| ||..+|+.+|..+.
T Consensus         4 ~~~~WT~eE~~~f~~~~~~~G~----~w~~Ia~~~~~-kt~~q~~~~y~~~~   50 (65)
T d2iw5b1           4 CNARWTTEEQLLAVQAIRKYGR----DFQAISDVIGN-KSVVQVKNFFVNYR   50 (65)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHSS----CHHHHHHHHSS-CCHHHHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHHHHHHHhCc----hHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence            3567999999999999999985    49999999999 99999999998753

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=1e-10  Score=72.27  Aligned_cols=47  Identities=17%  Similarity=0.319  Sum_probs=41.9

Q ss_pred             CCCCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHH
Q 048152            6 KVFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVIL   57 (104)
Q Consensus         6 ~~~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L   57 (104)
                      .....||.+|+.+|..|+.+|+.    .|.+||..||| ||..+|+.||-..
T Consensus        15 ~~~~~WT~eE~~~f~~~~~~~G~----~w~~Ia~~~~~-rt~~q~~~~yy~~   61 (68)
T d1xc5a1          15 QVMNMWSEQEKETFREKFMQHPK----NFGLIASFLER-KTVAECVLYYYLT   61 (68)
T ss_dssp             TTTTCCCTTTHHHHHHHHHHTTS----CSSSHHHHTTT-SCHHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHHHHCC----cHHHHHHHcCC-CCHHHHHHHHHHH
Confidence            34567999999999999999975    49999999999 9999999999754

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.99  E-value=3.3e-10  Score=66.10  Aligned_cols=45  Identities=20%  Similarity=0.542  Sum_probs=41.6

Q ss_pred             CCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHH
Q 048152            9 CGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILL   58 (104)
Q Consensus         9 ~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~   58 (104)
                      ++||.|||++|-.+...|+.    +|..||..||| ||..+|+.||..++
T Consensus         2 ~~WT~eED~~L~~~v~~~G~----~W~~Ia~~~~g-Rt~~~~knr~~~~l   46 (47)
T d1gv2a2           2 TSWTEEEDRIIYQAHKRLGN----RWAEIAKLLPG-RTDNAIKNHWNSTM   46 (47)
T ss_dssp             CCCCHHHHHHHHHHHHHHSS----CHHHHHTTCTT-CCHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHHhh----HHHHHHhHcCC-CCHHHHHHHHHHHc
Confidence            57999999999999999974    79999999999 99999999998763

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.97  E-value=8.2e-10  Score=64.73  Aligned_cols=46  Identities=17%  Similarity=0.416  Sum_probs=41.3

Q ss_pred             CCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHH
Q 048152            9 CGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILL   58 (104)
Q Consensus         9 ~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~   58 (104)
                      ..||.+||.+|-.++.+|+.+   .|.+||..||| ||..+|+.||...+
T Consensus         2 ~~WT~eED~~L~~~v~~~g~~---~W~~Ia~~~~~-Rt~~qcr~Rw~~~L   47 (50)
T d1guua_           2 TRWTREEDEKLKKLVEQNGTD---DWKVIANYLPN-RTDVQCQHRWQKVL   47 (50)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSS---CHHHHHHTSTT-CCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCC---CHHHHHHHHCC-CCHHHHHHHHHhhC
Confidence            469999999999999999643   49999999999 99999999998754

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.90  E-value=1.4e-09  Score=64.45  Aligned_cols=44  Identities=18%  Similarity=0.395  Sum_probs=40.2

Q ss_pred             CCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHH
Q 048152            9 CGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVI   56 (104)
Q Consensus         9 ~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~   56 (104)
                      .+||.+||++|-.++.+|+.   ..|..||..||| ||..+|+.||..
T Consensus         4 g~WT~eED~~L~~~v~~~g~---~~W~~Ia~~l~~-Rt~~qc~~Rw~~   47 (52)
T d1gvda_           4 GPWTKEEDQRLIKLVQKYGP---KRWSVIAKHLKG-RIGKQCRERWHN   47 (52)
T ss_dssp             CSCCHHHHHHHHHHHHHHCT---TCHHHHHTTSTT-CCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCC---CCHHHHHHHHCC-CCHHHHHHHHHh
Confidence            57999999999999999964   359999999999 999999999985

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.89  E-value=2.3e-10  Score=74.35  Aligned_cols=48  Identities=6%  Similarity=0.189  Sum_probs=42.6

Q ss_pred             CCCCHHHHHHHHHHHhhcCC--CCCchHHHHHHHcCCCCCHHHHHHHHHHH
Q 048152            9 CGWSWEENKLFELALAVVDE--QDPHRWEVVAAMVGGTKSAEDVQKHYVIL   57 (104)
Q Consensus         9 ~~WT~eE~k~fE~ALa~~p~--~~pdRWekIA~~vpg~KS~~eV~~ryk~L   57 (104)
                      ..||.|||+++-.++..|+.  +....|..||..||| ||..+|+.||...
T Consensus         2 ~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lpg-Rt~~qcr~Rw~~~   51 (86)
T d1igna1           2 ASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPN-HTGNSIRHRFRVY   51 (86)
T ss_dssp             CCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTT-SCHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcCC-CCHHHHHHHHHHH
Confidence            47999999999999999974  345679999999999 9999999999864

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.79  E-value=4.7e-09  Score=63.16  Aligned_cols=42  Identities=26%  Similarity=0.313  Sum_probs=38.3

Q ss_pred             CCCCHHHHHHHHHHHhhcCCCCCchHHHHHH-HcCCCCCHHHHHHHHH
Q 048152            9 CGWSWEENKLFELALAVVDEQDPHRWEVVAA-MVGGTKSAEDVQKHYV   55 (104)
Q Consensus         9 ~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~-~vpg~KS~~eV~~ryk   55 (104)
                      ..||.+|.++|+.||..|++    .|.+||+ .||+ ||+.||+.+|=
T Consensus         2 d~WT~eE~~~F~~~~~~yGK----df~~I~~~~v~~-Ks~~~~v~fYY   44 (57)
T d2crga1           2 EEWSASEACLFEEALEKYGK----DFNDIRQDFLPW-KSLTSIIEYYY   44 (57)
T ss_dssp             CCCCHHHHHHHHHHHHHTCS----CHHHHHHTTCSS-SCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHcc----cHHHHHHHHcCC-CCHHHHHHHHH
Confidence            46999999999999999987    5999997 5798 99999999994

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.74  E-value=2.1e-08  Score=66.55  Aligned_cols=58  Identities=21%  Similarity=0.409  Sum_probs=49.3

Q ss_pred             CCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHHHhh-hhhcCC
Q 048152            8 FCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDL-QFIESG   67 (104)
Q Consensus         8 ~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~~dV-~~IEsG   67 (104)
                      ...||+|||+++-.....+. ..+.-|..||+.++| ||..+|+.||+.|..-. ..||++
T Consensus        33 ~~~WTrEEDriIL~~~q~~G-~~~~tw~~Ia~~L~~-Rs~~qvr~Rf~~Lm~lf~~~~e~~   91 (95)
T d1ug2a_          33 VVLWTREADRVILTMCQEQG-AQPHTFSVISQQLGN-KTPVEVSHRFRELMQLFHTACESG   91 (95)
T ss_dssp             CSSSCHHHHHHHHHHHHHTT-SCTTTHHHHHHHHSS-CCHHHHHHHHHHHHHHHHHCSSSC
T ss_pred             cCCcCHHHHHHHHHHHHHcC-CcHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHhhccC
Confidence            45699999999999999887 356679999999999 99999999999998776 345653

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=5.6e-08  Score=61.46  Aligned_cols=50  Identities=30%  Similarity=0.461  Sum_probs=46.5

Q ss_pred             CCCCCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHH
Q 048152            6 KVFCGWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVI   56 (104)
Q Consensus         6 ~~~~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~   56 (104)
                      ..+..|+.+|...|..||+.+|+..|..|..||.+|+. ||++||.+.|..
T Consensus         6 t~d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VGt-RSaeECQ~ky~~   55 (73)
T d1wgxa_           6 SGDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGS-RSPEECQRKYME   55 (73)
T ss_dssp             CSSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTT-SCHHHHHHHHHH
T ss_pred             CcccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHcc-CCHHHHHHHHHh
Confidence            45668999999999999999999999999999999987 999999999975

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=8.2e-08  Score=56.43  Aligned_cols=46  Identities=15%  Similarity=0.389  Sum_probs=40.8

Q ss_pred             CCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcC--CCCCHHHHHHHHHHHH
Q 048152            9 CGWSWEENKLFELALAVVDEQDPHRWEVVAAMVG--GTKSAEDVQKHYVILL   58 (104)
Q Consensus         9 ~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vp--g~KS~~eV~~ryk~L~   58 (104)
                      ..||.||+.+|-.++.+|+.+   .|..||..+|  | ||..+|+.||..|.
T Consensus         3 ~~WT~eED~~L~~~v~~~G~~---~W~~I~~~~~~~~-Rt~~q~r~Rw~nl~   50 (52)
T d1w0ta_           3 QAWLWEEDKNLRSGVRKYGEG---NWSKILLHYKFNN-RTSVMLKDRWRTMK   50 (52)
T ss_dssp             CCCCHHHHHHHHHHHHHHCTT---CHHHHHHHSCCSS-CCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCC---CHHHHHhhcCCCC-CCHHHHHHHHHHHH
Confidence            479999999999999999643   6999999866  7 99999999998874

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=1.6e-07  Score=55.66  Aligned_cols=47  Identities=13%  Similarity=0.309  Sum_probs=40.8

Q ss_pred             CCCCHHHHHHHHHHHhhcCCCCCchHHHHHHH--cCCCCCHHHHHHHHHHHHH
Q 048152            9 CGWSWEENKLFELALAVVDEQDPHRWEVVAAM--VGGTKSAEDVQKHYVILLE   59 (104)
Q Consensus         9 ~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~--vpg~KS~~eV~~ryk~L~~   59 (104)
                      ..||.+|+++|..++.+|..   ..|..||..  ++| ||..+|+.||..|+.
T Consensus         3 ~~WT~eEd~~L~~~V~~~G~---~~W~~I~~~~~~~~-Rt~~q~k~Rwrn~~k   51 (55)
T d1w0ua_           3 QKWTVEESEWVKAGVQKYGE---GNWAAISKNYPFVN-RTAVMIKDRWRTMKR   51 (55)
T ss_dssp             CCCCHHHHHHHHHHHHHHCT---TCHHHHHHHSCCSS-CCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhCC---ChHHHHHhhcCCCC-cCHHHHHHHHHHHhc
Confidence            47999999999999999953   359999998  458 999999999998753

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=98.20  E-value=2.1e-06  Score=54.35  Aligned_cols=45  Identities=18%  Similarity=0.268  Sum_probs=40.5

Q ss_pred             CCCHHHHHHHHHHHhhcCCCCCchHHHHHHH----cCCCCCHHHHHHHHHHHH
Q 048152           10 GWSWEENKLFELALAVVDEQDPHRWEVVAAM----VGGTKSAEDVQKHYVILL   58 (104)
Q Consensus        10 ~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~----vpg~KS~~eV~~ryk~L~   58 (104)
                      +||.||+.+|-.++..|..+   .|..||..    ++| ||..+|+.||..|+
T Consensus         2 ~WT~eEd~~L~~~V~~~G~~---~W~~I~~~~~~~~~~-Rt~~qck~RWrn~l   50 (83)
T d2ckxa1           2 PFSVAEVEALVEAVEHLGTG---RWRDVKMRAFDNADH-RTYVDLKDKWKTLV   50 (83)
T ss_dssp             CCCHHHHHHHHHHHHHHCSS---CHHHHHHHHCTTCTT-SCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCcc---cHHHHHHHHHhhccC-CCHHHHHHHHHHHh
Confidence            69999999999999999643   69999986    688 99999999999886

>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: SANT domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.84  E-value=2.4e-05  Score=46.33  Aligned_cols=51  Identities=22%  Similarity=0.279  Sum_probs=43.2

Q ss_pred             CCCHHHHHHHHHHHhhcCCCCCchHHHHHHHcCCCCCHHHHHHHHHHHHHhhhhh
Q 048152           10 GWSWEENKLFELALAVVDEQDPHRWEVVAAMVGGTKSAEDVQKHYVILLEDLQFI   64 (104)
Q Consensus        10 ~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~vpg~KS~~eV~~ryk~L~~dV~~I   64 (104)
                      +||+-|-..|-+|+.+|..+.   -+.||..|.| ||.+||++.++..-+-...|
T Consensus         1 ~WnrrdF~~Fi~a~ekyGR~d---~~~Ia~e~~~-Kt~eEV~~Y~~vFw~ry~ei   51 (52)
T d1ofcx1           1 AWTKRDFNQFIKANEKYGRDD---IDNIAKDVEG-KTPEEVIEYNAVFWERCTEL   51 (52)
T ss_dssp             TCCHHHHHHHHHHHHHHCTTC---HHHHTTSSTT-CCHHHHHHHHHHHHHHGGGC
T ss_pred             CCCHHHHHHHHHHHHHHHHhh---HHHHHHHhcC-CCHHHHHHHHHHHHHHHHhh
Confidence            599999999999999998743   6999999999 99999998887765554443

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.75  E-value=0.0019  Score=39.06  Aligned_cols=49  Identities=18%  Similarity=0.186  Sum_probs=38.3

Q ss_pred             CCCCCCHHHHHHHHHHHhhcCCCCCchH--HHHHHH--cCCCCCHHHHHHHHHHHHH
Q 048152            7 VFCGWSWEENKLFELALAVVDEQDPHRW--EVVAAM--VGGTKSAEDVQKHYVILLE   59 (104)
Q Consensus         7 ~~~~WT~eE~k~fE~ALa~~p~~~pdRW--ekIA~~--vpg~KS~~eV~~ryk~L~~   59 (104)
                      .--.||.|+.+.|..|+..+..   ++|  .+|...  ||| .|..+|..|.+..--
T Consensus         6 ~R~~WT~elH~~Fv~Av~~lG~---~~atpk~I~~~m~v~~-lT~~qV~SHlQKYrl   58 (64)
T d1irza_           6 PRVLWTHELHNKFLAAVDHLGV---ERAVPKKILDLMNVDK-LTRENVASHLQKFRV   58 (64)
T ss_dssp             SSCSSCHHHHHHHHHHHHHHCT---TTCCHHHHHHHHCCTT-CCHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCc---cccchHHHHHHcCCCC-CCHHHHHHHHHHHHH
Confidence            3446999999999999999954   334  466555  888 999999999876543

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.86  E-value=0.002  Score=39.02  Aligned_cols=20  Identities=30%  Similarity=0.351  Sum_probs=16.8

Q ss_pred             CCcccccCCHHHHHHHhhhc
Q 048152           83 DCTQSVCWTDEDNNLLLQLD  102 (104)
Q Consensus        83 erkkg~pWTeeEhrlFL~~~  102 (104)
                      .++..+.||+|+|+.||.+.
T Consensus         3 ~kk~R~~WT~elH~~Fv~Av   22 (64)
T d1irza_           3 QKKPRVLWTHELHNKFLAAV   22 (64)
T ss_dssp             CCCSSCSSCHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHH
Confidence            45667889999999999875

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.29  E-value=0.0072  Score=35.82  Aligned_cols=20  Identities=10%  Similarity=0.245  Sum_probs=16.9

Q ss_pred             CCcccccCCHHHHHHHhhhc
Q 048152           83 DCTQSVCWTDEDNNLLLQLD  102 (104)
Q Consensus        83 erkkg~pWTeeEhrlFL~~~  102 (104)
                      .+++..|||+||+.+|+.+.
T Consensus        13 ~~~~~~~WT~eE~~~f~~~~   32 (68)
T d1xc5a1          13 DRQVMNMWSEQEKETFREKF   32 (68)
T ss_dssp             STTTTTCCCTTTHHHHHHHH
T ss_pred             cccCCCCCCHHHHHHHHHHH
Confidence            45667899999999999874

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.93  E-value=0.037  Score=31.84  Aligned_cols=20  Identities=20%  Similarity=0.224  Sum_probs=16.0

Q ss_pred             CCcccccCCHHHHHHHhhhc
Q 048152           83 DCTQSVCWTDEDNNLLLQLD  102 (104)
Q Consensus        83 erkkg~pWTeeEhrlFL~~~  102 (104)
                      .+....|||.||..+|+.++
T Consensus         8 ~~~~~~~WT~eEd~~L~~~v   27 (60)
T d2cqra1           8 ARSAEEPWTQNQQKLLELAL   27 (60)
T ss_dssp             TTCSSCCCCHHHHHHHHHHH
T ss_pred             CCcCCCCcCHHHHHHHHHHH
Confidence            34445689999999999875

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.00  E-value=0.19  Score=28.91  Aligned_cols=16  Identities=31%  Similarity=0.455  Sum_probs=13.6

Q ss_pred             cccCCHHHHHHHhhhc
Q 048152           87 SVCWTDEDNNLLLQLD  102 (104)
Q Consensus        87 g~pWTeeEhrlFL~~~  102 (104)
                      +-+||++|..+|+.+.
T Consensus         5 ~~~WT~eE~~~f~~~~   20 (65)
T d2iw5b1           5 NARWTTEEQLLAVQAI   20 (65)
T ss_dssp             CSSCCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHH
Confidence            4579999999999864

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.66  E-value=0.17  Score=27.76  Aligned_cols=14  Identities=29%  Similarity=0.572  Sum_probs=12.5

Q ss_pred             cCCHHHHHHHhhhc
Q 048152           89 CWTDEDNNLLLQLD  102 (104)
Q Consensus        89 pWTeeEhrlFL~~~  102 (104)
                      .||+||+.+||.++
T Consensus         3 ~Wt~eEd~~L~~~v   16 (47)
T d1x41a1           3 SWTAQEEMALLEAV   16 (47)
T ss_dssp             SSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHH
Confidence            49999999999885

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.23  E-value=0.19  Score=27.66  Aligned_cols=15  Identities=27%  Similarity=0.795  Sum_probs=13.2

Q ss_pred             ccCCHHHHHHHhhhc
Q 048152           88 VCWTDEDNNLLLQLD  102 (104)
Q Consensus        88 ~pWTeeEhrlFL~~~  102 (104)
                      .|||+||-.++|.++
T Consensus         2 ~~WT~eED~~L~~~v   16 (47)
T d1gv2a2           2 TSWTEEEDRIIYQAH   16 (47)
T ss_dssp             CCCCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHH
Confidence            489999999999875

>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: SLIDE domain
domain: SLIDE domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=85.05  E-value=1.4  Score=29.13  Aligned_cols=53  Identities=13%  Similarity=0.213  Sum_probs=45.6

Q ss_pred             CCCCHHHHHHHHHHHhhcCCCCCchHHHHHHHc------------CCCCCHHHHHHHHHHHHHhhh
Q 048152            9 CGWSWEENKLFELALAVVDEQDPHRWEVVAAMV------------GGTKSAEDVQKHYVILLEDLQ   62 (104)
Q Consensus         9 ~~WT~eE~k~fE~ALa~~p~~~pdRWekIA~~v------------pg~KS~~eV~~ryk~L~~dV~   62 (104)
                      ...|.+||+.+-.+|-.|.-+.++=|+.|-.+|            -. +|+.|+.+|...|+.-|.
T Consensus        50 k~yteeEDRfLl~~~~~~G~~~~~~~e~ir~~Ir~~p~FrFDwf~kS-Rt~~el~rR~~tLi~~i~  114 (128)
T d1ofcx2          50 KNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKS-RTALELQRRCNTLITLIE  114 (128)
T ss_dssp             SSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHT-CCHHHHHHHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHhCcchhhhhHhcc-CCHHHHHHHHHHHHHHHH
Confidence            459999999999999999999999999997655            24 889999999999976654

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.51  E-value=0.35  Score=27.12  Aligned_cols=15  Identities=20%  Similarity=0.204  Sum_probs=13.1

Q ss_pred             ccCCHHHHHHHhhhc
Q 048152           88 VCWTDEDNNLLLQLD  102 (104)
Q Consensus        88 ~pWTeeEhrlFL~~~  102 (104)
                      .|||+||-.+++.++
T Consensus         3 ~~WT~eEd~~L~~~V   17 (55)
T d1w0ua_           3 QKWTVEESEWVKAGV   17 (55)
T ss_dssp             CCCCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHH
Confidence            489999999999875