Citrus Sinensis ID: 048261

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50------
Protein Sequence
MFTDILLQLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECLYSCEI
Secondary Structure (PSIPRED)
ccEEEEEEEEEEEcccccccHHHHHHHHcHHHHHHHHHccHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cEEEEEEEEEEEEcccccccHHHHHHHHHcHHHHHHHHHcHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MFTDILLQLDikvapgshadeesVNKQLNDKERIAAALenpnlrqlVDECLYSCEI
Flexible Loop (DISEMBL)
MFTDILLQLdikvapgshadeesvnKQLNDKERIAAalenpnlrqlvdeclyscei
Low Complexity Region (SEG)
MFTDILLQLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECLYSCEI
Disordered region (IsUnstruct)
****ILLQLDI*******************************LRQLVDECLYS***
Disordered Region (DISOPRED)
MFTDILLQLDIKVAPGSHADEES*NKQLNDKERIAAALENPNLRQLVDECLYSC**
Disordered Region (DISEMBL)
MFTDILLQLDIKVAPG*********KQLNDKERIAAALENPNLRQLVDECLYSCEI
Disordered Region (DISPRO)
MFTDILLQLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECLYSC**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MFTDILLQLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECLYSCEI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	56	2.2.26 [Sep-21-2011]
Q9C9G6	157	MIP18 family protein At1g	no	no	0.857	0.305	0.729	5e-14
Q9V968	218	MIP18 family protein CG30	yes	no	0.803	0.206	0.622	1e-10
Q9DCL2	160	MIP18 family protein FAM9	yes	no	0.785	0.275	0.568	2e-10
Q9H5X1	160	MIP18 family protein FAM9	yes	no	0.785	0.275	0.568	2e-10
Q3T0U7	160	MIP18 family protein FAM9	yes	no	0.785	0.275	0.568	2e-10
Q9D187	163	Mitotic spindle-associate	no	no	0.839	0.288	0.531	2e-09
Q9Y3D0	163	Mitotic spindle-associate	no	no	0.839	0.288	0.531	2e-09
Q9SR25	149	MIP18 family protein At3g	no	no	0.857	0.322	0.541	4e-09
O62252	160	MIP18 family protein F45G	yes	no	0.875	0.306	0.510	1e-08
Q9GPR0	150	MIP18 family protein FAM9	yes	no	0.785	0.293	0.522	8e-08

>sp|Q9C9G6|U195A_ARATH MIP18 family protein At1g68310 OS=Arabidopsis thaliana GN=At1g68310 PE=2 SV=2

 Score = 76.3 bits (186), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 35/48 (72%), Positives = 44/48 (91%)

Query: 8   QLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECLYSCE 55
           ++DI+VAPGSHA E+++NKQLNDKER+AAALENPNL ++VDECL S E
Sbjct: 110 KIDIRVAPGSHATEDALNKQLNDKERVAAALENPNLVEMVDECLPSEE 157

May play a role in chromosome segregation through establishment of sister chromatid cohesion.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9V968|U195B_DROME MIP18 family protein CG30152 OS=Drosophila melanogaster GN=CG30152 PE=1 SV=1

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 28/45 (62%), Positives = 37/45 (82%)

Query: 7   LQLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECL 51
           ++LDI +  G+H  EE +NKQ+NDKERIAAA+ENPNLR LV+ C+
Sbjct: 170 IKLDIYIKKGAHQTEEEINKQINDKERIAAAMENPNLRDLVENCI 214

May play a role in chromosome segregation through establishment of sister chromatid cohesion.

Drosophila melanogaster (taxid: 7227)

>sp|Q9DCL2|FA96A_MOUSE MIP18 family protein FAM96A OS=Mus musculus GN=Fam96a PE=2 SV=1

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 25/44 (56%), Positives = 40/44 (90%)

Query: 8   QLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECL 51
           +L+I ++ G+H+ EE +NKQ+NDKER+AAA+ENPNLR++V++C+
Sbjct: 113 KLEIYISEGTHSTEEDINKQINDKERVAAAMENPNLREIVEQCV 156

May play a role in chromosome segregation through establishment of sister chromatid cohesion.

Mus musculus (taxid: 10090)

>sp|Q9H5X1|FA96A_HUMAN MIP18 family protein FAM96A OS=Homo sapiens GN=FAM96A PE=1 SV=1

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 25/44 (56%), Positives = 40/44 (90%)

Query: 8   QLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECL 51
           +L+I ++ G+H+ EE +NKQ+NDKER+AAA+ENPNLR++V++C+
Sbjct: 113 KLEIYISEGTHSTEEDINKQINDKERVAAAMENPNLREIVEQCV 156

May play a role in chromosome segregation through establishment of sister chromatid cohesion.

Homo sapiens (taxid: 9606)

>sp|Q3T0U7|FA96A_BOVIN MIP18 family protein FAM96A OS=Bos taurus GN=FAM96A PE=2 SV=1

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 25/44 (56%), Positives = 40/44 (90%)

Query: 8   QLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECL 51
           +L+I ++ G+H+ EE +NKQ+NDKER+AAA+ENPNLR++V++C+
Sbjct: 113 KLEIYISEGTHSTEEDINKQINDKERVAAAMENPNLREIVEQCV 156

May play a role in chromosome segregation through establishment of sister chromatid cohesion.

Bos taurus (taxid: 9913)

>sp|Q9D187|MIP18_MOUSE Mitotic spindle-associated MMXD complex subunit MIP18 OS=Mus musculus GN=Fam96b PE=2 SV=1

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 25/47 (53%), Positives = 38/47 (80%)

Query: 7   LQLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECLYS 53
            ++D+ + PG+HA E +VNKQL DKER+AAALEN +L ++V++CL +
Sbjct: 115 FKMDVHITPGTHASEHAVNKQLADKERVAAALENTHLLEVVNQCLSA 161

As part of the mitotic spindle-associated MMXD complex it plays a role in chromosome segregation.

Mus musculus (taxid: 10090)

>sp|Q9Y3D0|MIP18_HUMAN Mitotic spindle-associated MMXD complex subunit MIP18 OS=Homo sapiens GN=FAM96B PE=1 SV=1

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 25/47 (53%), Positives = 38/47 (80%)

Query: 7   LQLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECLYS 53
            ++D+ + PG+HA E +VNKQL DKER+AAALEN +L ++V++CL +
Sbjct: 115 FKMDVHITPGTHASEHAVNKQLADKERVAAALENTHLLEVVNQCLSA 161

As part of the mitotic spindle-associated MMXD complex it plays a role in chromosome segregation.

Homo sapiens (taxid: 9606)

>sp|Q9SR25|U195B_ARATH MIP18 family protein At3g09380 OS=Arabidopsis thaliana GN=At3g09380 PE=2 SV=2

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 26/48 (54%), Positives = 36/48 (75%)

Query: 7   LQLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECLYSC 54
            ++D++VAPGSH  E +VNKQL DKER+ AALENP L  L+++ +  C
Sbjct: 102 FKVDVRVAPGSHDKETTVNKQLGDKERVTAALENPELVALLNKMMQVC 149

May play a role in chromosome segregation through establishment of sister chromatid cohesion.

Arabidopsis thaliana (taxid: 3702)

>sp|O62252|U195_CAEEL MIP18 family protein F45G2.10 OS=Caenorhabditis elegans GN=F45G2.10 PE=1 SV=1

 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 25/49 (51%), Positives = 36/49 (73%)

Query: 7   LQLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECLYSCE 55
           +++ + + PGSH+ EES+N+QL DKER+AAA+EN  L   V+ECL   E
Sbjct: 112 VKVSVSITPGSHSTEESINRQLADKERVAAAMENQGLMHAVNECLRVPE 160

May play a role in chromosome segregation through establishment of sister chromatid cohesion.

Caenorhabditis elegans (taxid: 6239)

>sp|Q9GPR0|FA96A_DICDI MIP18 family protein FAM96A OS=Dictyostelium discoideum GN=fam96A PE=3 SV=1

 Score = 55.8 bits (133), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 23/44 (52%), Positives = 34/44 (77%)

Query: 8   QLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECL 51
           +++I +  G+H  E+ +NKQ+NDKERI AALENP + QLV +C+
Sbjct: 102 KIEIYIKKGTHQTEDEINKQINDKERIIAALENPEIFQLVKKCI 145

May play a role in chromosome segregation through establishment of sister chromatid cohesion.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	56
351722861	154	uncharacterized protein LOC100305681 [Gl	0.892	0.324	0.86	2e-17
224133840	154	predicted protein [Populus trichocarpa]	0.875	0.318	0.877	5e-17
225430768	154	PREDICTED: MIP18 family protein At1g6831	0.892	0.324	0.84	7e-17
297735159	119	unnamed protein product [Vitis vinifera]	0.892	0.420	0.84	7e-17
351725477	154	uncharacterized protein LOC100500284 [Gl	0.875	0.318	0.857	1e-16
255561168	161	Protein FAM96B, putative [Ricinus commun	0.875	0.304	0.857	2e-16
388494310	151	unknown [Lotus japonicus]	0.875	0.324	0.877	2e-16
449462848	154	PREDICTED: MIP18 family protein At1g6831	0.875	0.318	0.816	2e-16
297819790	154	predicted protein [Arabidopsis lyrata su	0.875	0.318	0.836	2e-16
145332803	154	uncharacterized protein [Arabidopsis tha	0.875	0.318	0.816	2e-15

>gi|351722861|ref|NP_001235211.1| uncharacterized protein LOC100305681 [Glycine max] gi|255626291|gb|ACU13490.1| unknown [Glycine max]

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 43/50 (86%), Positives = 48/50 (96%)

Query: 7   LQLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECLYSCEI 56
            ++DIKV+PGSHADEESVNKQLNDKER+AAALENPNLRQLVDECLYS E+
Sbjct: 105 FKVDIKVSPGSHADEESVNKQLNDKERVAAALENPNLRQLVDECLYSNEL 154

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133840|ref|XP_002327693.1| predicted protein [Populus trichocarpa] gi|222836778|gb|EEE75171.1| predicted protein [Populus trichocarpa]

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 43/49 (87%), Positives = 48/49 (97%)

Query: 8   QLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECLYSCEI 56
           ++DIKVAPGSHADEE+VNKQLNDKER+AAALENPNLRQLVDECLYS E+
Sbjct: 106 KVDIKVAPGSHADEEAVNKQLNDKERVAAALENPNLRQLVDECLYSNEL 154

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225430768|ref|XP_002267591.1| PREDICTED: MIP18 family protein At1g68310-like [Vitis vinifera]

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 42/50 (84%), Positives = 48/50 (96%)

Query: 7   LQLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECLYSCEI 56
            ++DIKV+PGSHA+EESVNKQLNDKER+AAALENPNLRQLVDECLYS E+
Sbjct: 105 FKVDIKVSPGSHANEESVNKQLNDKERVAAALENPNLRQLVDECLYSNEL 154

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297735159|emb|CBI17521.3| unnamed protein product [Vitis vinifera]

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 42/50 (84%), Positives = 48/50 (96%)

Query: 7   LQLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECLYSCEI 56
            ++DIKV+PGSHA+EESVNKQLNDKER+AAALENPNLRQLVDECLYS E+
Sbjct: 70  FKVDIKVSPGSHANEESVNKQLNDKERVAAALENPNLRQLVDECLYSNEL 119

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725477|ref|NP_001235814.1| uncharacterized protein LOC100500284 [Glycine max] gi|255629934|gb|ACU15319.1| unknown [Glycine max]

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 42/49 (85%), Positives = 48/49 (97%)

Query: 8   QLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECLYSCEI 56
           ++DIKV+PGSHA+EESVNKQLNDKER+AAALENPNLRQLVDECLYS E+
Sbjct: 106 KVDIKVSPGSHANEESVNKQLNDKERVAAALENPNLRQLVDECLYSNEL 154

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561168|ref|XP_002521596.1| Protein FAM96B, putative [Ricinus communis] gi|223539274|gb|EEF40867.1| Protein FAM96B, putative [Ricinus communis]

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 42/49 (85%), Positives = 48/49 (97%)

Query: 8   QLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECLYSCEI 56
           ++DIKV+PGSHA+EESVNKQLNDKER+AAALENPNLRQLVDECLYS E+
Sbjct: 113 KVDIKVSPGSHANEESVNKQLNDKERVAAALENPNLRQLVDECLYSNEL 161

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388494310|gb|AFK35221.1| unknown [Lotus japonicus]

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 43/49 (87%), Positives = 47/49 (95%)

Query: 8   QLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECLYSCEI 56
           ++DIKV+PGSHADEESVNKQLNDKERIAAALENPNLRQLVDECL S E+
Sbjct: 103 KVDIKVSPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECLSSNEL 151

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462848|ref|XP_004149152.1| PREDICTED: MIP18 family protein At1g68310-like [Cucumis sativus] gi|449517634|ref|XP_004165850.1| PREDICTED: MIP18 family protein At1g68310-like [Cucumis sativus]

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 40/49 (81%), Positives = 48/49 (97%)

Query: 8   QLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECLYSCEI 56
           ++DIKV+PGSHA+E+SVNKQLNDKER+AAA+ENPNLRQLVDECLYS E+
Sbjct: 106 KVDIKVSPGSHANEDSVNKQLNDKERVAAAMENPNLRQLVDECLYSSEL 154

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297819790|ref|XP_002877778.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297323616|gb|EFH54037.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 41/49 (83%), Positives = 47/49 (95%)

Query: 8   QLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECLYSCEI 56
           ++DI+V+PGSHADE SVNKQLNDKER+AAALENPNLRQLVDEC+YS EI
Sbjct: 106 KVDIRVSPGSHADEVSVNKQLNDKERVAAALENPNLRQLVDECIYSAEI 154

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145332803|ref|NP_001078267.1| uncharacterized protein [Arabidopsis thaliana] gi|332645196|gb|AEE78717.1| uncharacterized protein [Arabidopsis thaliana]

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 40/49 (81%), Positives = 46/49 (93%)

Query: 8   QLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECLYSCEI 56
           ++DI+V+PGSHADE SVNKQLNDKER+ AALENPNLRQLVDEC+YS EI
Sbjct: 106 KVDIRVSPGSHADEVSVNKQLNDKERVVAALENPNLRQLVDECIYSDEI 154

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	56
TAIR|locus:4010713823	154	AT3G50845 "AT3G50845" [Arabido	0.875	0.318	0.816	2.5e-17
TAIR|locus:2199362	159	AE7 "AS1/2 ENHANCER7" [Arabido	0.857	0.301	0.729	1.8e-14
FB|FBgn0034543	218	CG30152 [Drosophila melanogast	0.803	0.206	0.622	1e-11
UNIPROTKB|Q3T0U7	160	FAM96A "MIP18 family protein F	0.785	0.275	0.568	1.7e-11
UNIPROTKB|Q9H5X1	160	FAM96A "MIP18 family protein F	0.785	0.275	0.568	1.7e-11
MGI|MGI:1915500	160	Fam96a "family with sequence s	0.785	0.275	0.568	1.7e-11
RGD|1307481	160	Fam96a "family with sequence s	0.785	0.275	0.568	1.7e-11
ZFIN|ZDB-GENE-040426-1965	157	zgc:73185 "zgc:73185" [Danio r	0.785	0.280	0.568	3.5e-11
ZFIN|ZDB-GENE-040718-148	159	fam96b "family with sequence s	0.821	0.289	0.565	2e-10
UNIPROTKB|E1BWV0	161	FAM96B "Uncharacterized protei	0.785	0.273	0.568	4.1e-10

TAIR|locus:4010713823 AT3G50845 "AT3G50845" [Arabidopsis thaliana (taxid:3702)]

 Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
 Identities = 40/49 (81%), Positives = 46/49 (93%)

Query:     8 QLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECLYSCEI 56
             ++DI+V+PGSHADE SVNKQLNDKER+ AALENPNLRQLVDEC+YS EI
Sbjct:   106 KVDIRVSPGSHADEVSVNKQLNDKERVVAALENPNLRQLVDECIYSDEI 154

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2199362 AE7 "AS1/2 ENHANCER7" [Arabidopsis thaliana (taxid:3702)]

 Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 35/48 (72%), Positives = 44/48 (91%)

Query:     8 QLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECLYSCE 55
             ++DI+VAPGSHA E+++NKQLNDKER+AAALENPNL ++VDECL S E
Sbjct:   112 KIDIRVAPGSHATEDALNKQLNDKERVAAALENPNLVEMVDECLPSEE 159

GO:0005634 "nucleus" evidence=ISM

GO:0010209 "vacuolar sorting signal binding" evidence=IDA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=IMP

GO:0042127 "regulation of cell proliferation" evidence=IMP

GO:0051726 "regulation of cell cycle" evidence=IMP

FB|FBgn0034543 CG30152 [Drosophila melanogaster (taxid:7227)]

 Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
 Identities = 28/45 (62%), Positives = 37/45 (82%)

Query:     7 LQLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECL 51
             ++LDI +  G+H  EE +NKQ+NDKERIAAA+ENPNLR LV+ C+
Sbjct:   170 IKLDIYIKKGAHQTEEEINKQINDKERIAAAMENPNLRDLVENCI 214

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q3T0U7 FAM96A "MIP18 family protein FAM96A" [Bos taurus (taxid:9913)]

 Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
 Identities = 25/44 (56%), Positives = 40/44 (90%)

Query:     8 QLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECL 51
             +L+I ++ G+H+ EE +NKQ+NDKER+AAA+ENPNLR++V++C+
Sbjct:   113 KLEIYISEGTHSTEEDINKQINDKERVAAAMENPNLREIVEQCV 156

GO:0005737 "cytoplasm" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0007059 "chromosome segregation" evidence=IEA

UNIPROTKB|Q9H5X1 FAM96A "MIP18 family protein FAM96A" [Homo sapiens (taxid:9606)]

 Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
 Identities = 25/44 (56%), Positives = 40/44 (90%)

Query:     8 QLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECL 51
             +L+I ++ G+H+ EE +NKQ+NDKER+AAA+ENPNLR++V++C+
Sbjct:   113 KLEIYISEGTHSTEEDINKQINDKERVAAAMENPNLREIVEQCV 156

GO:0007059 "chromosome segregation" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

MGI|MGI:1915500 Fam96a "family with sequence similarity 96, member A" [Mus musculus (taxid:10090)]

 Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
 Identities = 25/44 (56%), Positives = 40/44 (90%)

Query:     8 QLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECL 51
             +L+I ++ G+H+ EE +NKQ+NDKER+AAA+ENPNLR++V++C+
Sbjct:   113 KLEIYISEGTHSTEEDINKQINDKERVAAAMENPNLREIVEQCV 156

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0007059 "chromosome segregation" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0046872 "metal ion binding" evidence=IEA

RGD|1307481 Fam96a "family with sequence similarity 96, member A" [Rattus norvegicus (taxid:10116)]

 Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
 Identities = 25/44 (56%), Positives = 40/44 (90%)

Query:     8 QLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECL 51
             +L+I ++ G+H+ EE +NKQ+NDKER+AAA+ENPNLR++V++C+
Sbjct:   113 KLEIYISEGTHSTEEDINKQINDKERVAAAMENPNLREIVEQCV 156

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-040426-1965 zgc:73185 "zgc:73185" [Danio rerio (taxid:7955)]

 Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 25/44 (56%), Positives = 39/44 (88%)

Query:     8 QLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECL 51
             +L+I +  G+H+ EE +NKQ+NDKER+AAA+ENPNLR++V++C+
Sbjct:   109 KLEIYITEGTHSIEEDINKQINDKERVAAAMENPNLREIVEQCV 152

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

ZFIN|ZDB-GENE-040718-148 fam96b "family with sequence similarity 96, member B" [Danio rerio (taxid:7955)]

 Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 26/46 (56%), Positives = 38/46 (82%)

Query:     8 QLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECLYS 53
             ++D+ + PG+HA E++VNKQL DKER+AAALEN  L ++V++CL S
Sbjct:   111 KIDVHITPGTHASEDAVNKQLADKERVAAALENSQLLEVVNQCLSS 156

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|E1BWV0 FAM96B "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
 Identities = 25/44 (56%), Positives = 37/44 (84%)

Query:     8 QLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECL 51
             ++D+ + PG+HA E +VNKQL DKER+AAALEN +L ++V++CL
Sbjct:   114 KMDVHITPGTHASEHAVNKQLADKERVAAALENSHLLEVVNQCL 157

GO:0007059 "chromosome segregation" evidence=IEA

GO:0071817 "MMXD complex" evidence=IEA

GO:0097361 "CIA complex" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	56
COG5133	181	COG5133, COG5133, Uncharacterized conserved protei	2e-10

>gnl|CDD|227462 COG5133, COG5133, Uncharacterized conserved protein [Function unknown]

 Score = 51.9 bits (124), Expect = 2e-10
 Identities = 21/47 (44%), Positives = 31/47 (65%)

Query: 8   QLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECLYSC 54
            + + +  G+H  E  VNKQLNDKER+AAA EN  L  ++++ L +C
Sbjct: 134 HVQVHIKKGTHISERQVNKQLNDKERVAAACENEQLLDVMEKMLPTC 180

Length = 181

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	56
KOG3381	161	consensus Uncharacterized conserved protein [Funct	99.97
COG5133	181	Uncharacterized conserved protein [Function unknow	99.87
PF05479	138	PsaN: Photosystem I reaction centre subunit N (PSA	88.82
PLN00054	139	photosystem I reaction center subunit N; Provision	86.03

>KOG3381 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.97  E-value=8.9e-31  Score=178.14  Aligned_cols=53  Identities=58%  Similarity=0.944  Sum_probs=50.8

Q ss_pred             cccceeEEEEecCCCCcCHHHHHhhhchHHHHHHHhcCchHHHHHHHHhccCC
Q 048261            3 TDILLQLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECLYSCE   55 (56)
Q Consensus         3 ~~~~fKvdV~I~~GsH~~e~~vNKQLnDKERVaAAlEN~~L~~~vn~cl~~~~   55 (56)
                      -|.||||+|+|+||||++|++||||||||||||||||||+|+++||+||..++
T Consensus       109 Lp~rfkvdV~I~~GtH~tE~~vNKQLnDKERVaAA~EN~~L~~~v~~cl~~~~  161 (161)
T KOG3381|consen  109 LPPRFKVDVYIKPGTHATEEAVNKQLNDKERVAAALENPNLLEVVNKCLPACE  161 (161)
T ss_pred             CCCceeEEEEEcCCCcCCHHHHHhhhccHHHHHHHhcChHHHHHHHHHhccCC
Confidence            38899999999999999999999999999999999999999999999998764

>COG5133 Uncharacterized conserved protein [Function unknown]

Probab=99.87  E-value=7.7e-23  Score=140.80  Aligned_cols=52  Identities=40%  Similarity=0.638  Sum_probs=50.2

Q ss_pred             cccceeEEEEecCCCCcCHHHHHhhhchHHHHHHHhcCchHHHHHHHHhccC
Q 048261            3 TDILLQLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECLYSC   54 (56)
Q Consensus         3 ~~~~fKvdV~I~~GsH~~e~~vNKQLnDKERVaAAlEN~~L~~~vn~cl~~~   54 (56)
                      -|.||.|+|.|+.|+|.+|.++||||||||||+||.||++|+.++++||.+|
T Consensus       129 lpprF~v~v~ikkGtH~se~qvNKQLnDKeRVaAAcENEqLL~v~~kml~tc  180 (181)
T COG5133         129 LPPRFHVQVHIKKGTHISERQVNKQLNDKERVAAACENEQLLDVMEKMLPTC  180 (181)
T ss_pred             CCCceeEEEEEecCCcccHHHHhhhhchHHHHHHhhchHHHHHHHHhhhhcc
Confidence            4889999999999999999999999999999999999999999999999876

>PF05479 PsaN: Photosystem I reaction centre subunit N (PSAN or PSI-N); InterPro: IPR008796 This family contains several Photosystem I reaction centre subunit N (PSI-N) proteins

Probab=88.82  E-value=0.048  Score=36.97  Aligned_cols=13  Identities=62%  Similarity=0.915  Sum_probs=10.8

Q ss_pred             HHHhhhchHHHHH
Q 048261           23 SVNKQLNDKERIA   35 (56)
Q Consensus        23 ~vNKQLnDKERVa   35 (56)
                      .-||.||||||++
T Consensus        64 kaNKelNDKkRla   76 (138)
T PF05479_consen   64 KANKELNDKKRLA   76 (138)
T ss_dssp             HSSSSSTTTSS-T
T ss_pred             HhhhhhhhHHHhh
Confidence            5699999999987

The protein has no known function although it is localised in the thylakoid lumen []. PSI-N is a small extrinsic subunit at the lumen side and is very likely involved in the docking of plastocyanin.; GO: 0005516 calmodulin binding, 0015979 photosynthesis, 0009522 photosystem I, 0042651 thylakoid membrane; PDB: 2WSE_N 2WSC_N 2WSF_N 2O01_N.

>PLN00054 photosystem I reaction center subunit N; Provisional

Probab=86.03  E-value=0.34  Score=32.92  Aligned_cols=15  Identities=53%  Similarity=0.831  Sum_probs=13.0

Q ss_pred             HHHhhhchHHHHHHH
Q 048261           23 SVNKQLNDKERIAAA   37 (56)
Q Consensus        23 ~vNKQLnDKERVaAA   37 (56)
                      .-||.||||.|.+--
T Consensus        64 ~aNKeLNDKKRlATS   78 (139)
T PLN00054         64 KANKELNDKKRLATS   78 (139)
T ss_pred             hhhhhhhhHHhhhhc
Confidence            579999999998754

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	56
3ux3_A	130	Crystal Structure Of Domain-Swapped Fam96a Minor Di		1e-11
3ux2_A	130	Crystal Structure Of Domain-Swapped Fam96a Major Di		4e-11

>pdb|3UX3|A Chain A, Crystal Structure Of Domain-Swapped Fam96a Minor Dimer Length = 130

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 25/44 (56%), Positives = 40/44 (90%)
Query: 8   QLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECL 51
           +L+I ++ G+H+ EE +NKQ+NDKER+AAA+ENPNLR++V++C+
Sbjct: 86  KLEIYISEGTHSTEEDINKQINDKERVAAAMENPNLREIVEQCV 129

>pdb|3UX2|A Chain A, Crystal Structure Of Domain-Swapped Fam96a Major Dimer Length = 130

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 25/44 (56%), Positives = 39/44 (88%)
Query: 8   QLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECL 51
           +L+I ++ G+H+ EE +NKQ+NDKER+AAA ENPNLR++V++C+
Sbjct: 86  KLEIYISEGTHSTEEDINKQINDKERVAAAXENPNLREIVEQCV 129

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	56
3ux2_A	130	MIP18 family protein FAM96A; immune system, DUF59,	2e-18

>3ux2_A MIP18 family protein FAM96A; immune system, DUF59, 3D domain swapping, protein-protein interaction, alpha and beta protein (A+B); HET: MSE; 1.80A {Homo sapiens} PDB: 3ux3_A Length = 130

 Score = 71.1 bits (174), Expect = 2e-18
 Identities = 25/44 (56%), Positives = 40/44 (90%)

Query: 8   QLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECL 51
           +L+I ++ G+H+ EE +NKQ+NDKER+AAA+ENPNLR++V++C+
Sbjct: 86  KLEIYISEGTHSTEEDINKQINDKERVAAAMENPNLREIVEQCV 129

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	56
3ux2_A	130	MIP18 family protein FAM96A; immune system, DUF59,	99.96
2llw_A	71	Heat shock protein STI1; DP domain, alpha helix, c	81.93

>3ux2_A MIP18 family protein FAM96A; immune system, DUF59, 3D domain swapping, protein-protein interaction, alpha and beta protein (A+B); HET: MSE; 1.80A {Homo sapiens} PDB: 3ux3_A

Probab=99.96  E-value=2.5e-30  Score=168.46  Aligned_cols=50  Identities=50%  Similarity=0.890  Sum_probs=42.0

Q ss_pred             cccceeEEEEecCCCCcCHHHHHhhhchHHHHHHHhcCchHHHHHHHHhc
Q 048261            3 TDILLQLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECLY   52 (56)
Q Consensus         3 ~~~~fKvdV~I~~GsH~~e~~vNKQLnDKERVaAAlEN~~L~~~vn~cl~   52 (56)
                      -|.+|||+|+|+||||++|++|||||||||||||||||++|+++|++||.
T Consensus        81 lp~~~kV~v~I~pgtH~~e~~vnKQl~DKERvaAAlEn~~l~~~v~~c~~  130 (130)
T 3ux2_A           81 LPFKHKLEIYISEGTHSTEEDINKQINDKERVAAAMENPNLREIVEQCVL  130 (130)
T ss_dssp             CSSCCCCCCCCCCC------CHHHHHHCHHHHHHHHHSHHHHHHHHHHHC
T ss_pred             CCCceEEEEEECCCCCcCHHHHHHhhhhHHHHHHHhcCHHHHHHHHHHcC
Confidence            37899999999999999999999999999999999999999999999983

>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}

Probab=81.93  E-value=1.5  Score=25.17  Aligned_cols=31  Identities=23%  Similarity=0.540  Sum_probs=25.9

Q ss_pred             HHHHHhhhchHHHHHHHhcCchHHHHHHHHhc
Q 048261           21 EESVNKQLNDKERIAAALENPNLRQLVDECLY   52 (56)
Q Consensus        21 e~~vNKQLnDKERVaAAlEN~~L~~~vn~cl~   52 (56)
                      |+.+++=++|-| |.++|-||....++..|..
T Consensus        10 ee~~~~~m~dPE-i~~im~DP~~~~~lq~~~~   40 (71)
T 2llw_A           10 EETYQRAMKDPE-VAAIMQDPVMQSILQQAQQ   40 (71)
T ss_dssp             HHHHHHHHHSHH-HHHHHTCTHHHHHHHHHHH
T ss_pred             HHHHHHHhcCHH-HHHHhCCHHHHHHHHHHHH
Confidence            667888899987 8999999999988887754

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00