Citrus Sinensis ID: 048265

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90
Protein Sequence
MATQYKDSQRILLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWYKYQKLQAGHANEDGMLGSPEANASAKYVILEEIDDLDEGT
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEcccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEEccHHHccccc
Coil and Loop (DISEMBL)
MATQYKDSQRILLQYVNVQVAVFYFhdeftwlrGFGLFTILVGVSLFNWYKYQKLqaghanedgmlgspeanaSAKYVILEeiddldegt
Flexible Loop (DISEMBL)
MATQYKDSQRILLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWYKYQKLQAGHANEDGMLGSPEANASAKYVILEEIDDLDEGT
Low Complexity Region (SEG)
MATQYKDSQRILLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWYKYQKLQAGHANEDGMLGSPEANASAKYVILEEIDDLDEGT
Disordered region (IsUnstruct)
*********RILLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWYKYQKLQAG******************YVIL**********
Disordered Region (DISOPRED)
*********RILLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWYKYQK***********************VIL***D******
Disordered Region (DISEMBL)
MATQYKDSQRILLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWYKYQKLQAGHANEDGMLGSPEANASAKYVILEEIDDLDEGT
Disordered Region (DISPRO)
*****KDSQRILLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWYKYQKLQA****************SAKY*ILEEI*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MATQYKDSQRILLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWYKYQKLQAGHANEDGMLGSPEANASAKYVILEEIDDLDEGT
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	90	2.2.26 [Sep-21-2011]
Q8H184	414	Probable sugar phosphate/	yes	no	0.811	0.176	0.592	3e-19

>sp|Q8H184|PT106_ARATH Probable sugar phosphate/phosphate translocator At1g06470 OS=Arabidopsis thaliana GN=At1g06470 PE=2 SV=1

 Score = 93.6 bits (231), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 45/76 (59%), Positives = 57/76 (75%), Gaps = 3/76 (3%)

Query: 11  ILLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWYKYQKLQAGH-ANEDGMLGSP 69
           ++ + V + VAVFYFHDEFTWL+G GL  I+VGVSLFNWYKY KLQ GH   E+  L +P
Sbjct: 336 VVKEAVTIVVAVFYFHDEFTWLKGVGLMIIMVGVSLFNWYKYDKLQKGHKTEEEKQLQAP 395

Query: 70  EANASAKYVILEEIDD 85
             + + KYVIL+E+DD
Sbjct: 396 --SQTGKYVILDEMDD 409

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	90
359485467	1044	PREDICTED: G-type lectin S-receptor-like	0.888	0.076	0.574	4e-22
255569841	519	Triose phosphate/phosphate translocator,	0.866	0.150	0.641	4e-22
224121440	409	predicted protein [Populus trichocarpa]	0.888	0.195	0.587	3e-21
302143478	713	unnamed protein product [Vitis vinifera]	0.888	0.112	0.574	3e-21
359485471	510	PREDICTED: probable sugar phosphate/phos	0.888	0.156	0.563	2e-20
302143479	529	unnamed protein product [Vitis vinifera]	0.888	0.151	0.563	2e-20
326505650	432	predicted protein [Hordeum vulgare subsp	0.877	0.182	0.583	4e-20
215704227	431	unnamed protein product [Oryza sativa Ja	0.855	0.178	0.589	4e-20
222634967	401	hypothetical protein OsJ_20151 [Oryza sa	0.855	0.192	0.589	5e-20
357125272	431	PREDICTED: probable sugar phosphate/phos	0.855	0.178	0.589	6e-20

>gi|359485467|ref|XP_002277954.2| PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5-like [Vitis vinifera]

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 50/87 (57%), Positives = 66/87 (75%), Gaps = 7/87 (8%)

Query: 11   ILLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWYKYQKLQAGHANEDGM----- 65
            ++ + V + VAVFYFHD+FTWL+G GLFTI+VGVSLFNWYKY KLQ GH+NE  M     
Sbjct: 958  VVKEAVTILVAVFYFHDQFTWLKGVGLFTIMVGVSLFNWYKYLKLQTGHSNEVDMGDAAG 1017

Query: 66   --LGSPEANASAKYVILEEIDDLDEGT 90
               GS ++N +A+YVILEE+D+ ++ T
Sbjct: 1018 DIAGSLKSNINARYVILEEVDEQEDST 1044

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255569841|ref|XP_002525884.1| Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor, putative [Ricinus communis] gi|223534798|gb|EEF36488.1| Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor, putative [Ricinus communis]

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 50/78 (64%), Positives = 59/78 (75%)

Query: 11  ILLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWYKYQKLQAGHANEDGMLGSPE 70
           ++ + V + VAVFYFHDEFTWL+G GL  I+VGVSLFNWYKY KLQ     ED +  SPE
Sbjct: 440 VVKEAVTILVAVFYFHDEFTWLKGVGLLIIMVGVSLFNWYKYHKLQKHQIGEDDLAESPE 499

Query: 71  ANASAKYVILEEIDDLDE 88
           A  SAKYVILEE+DD D+
Sbjct: 500 ATISAKYVILEEMDDQDD 517

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224121440|ref|XP_002330828.1| predicted protein [Populus trichocarpa] gi|222872630|gb|EEF09761.1| predicted protein [Populus trichocarpa]

 Score =  105 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 47/80 (58%), Positives = 60/80 (75%)

Query: 11  ILLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWYKYQKLQAGHANEDGMLGSPE 70
           ++ + V + VAV YFHD+FTWL+G GL  I+VGV LFNWYKYQKLQ G  +E+   GS  
Sbjct: 330 VVKEAVTILVAVIYFHDKFTWLKGAGLLIIMVGVGLFNWYKYQKLQKGQTSENDSAGSSP 389

Query: 71  ANASAKYVILEEIDDLDEGT 90
            N + KYVIL+E+DDLD+GT
Sbjct: 390 TNVATKYVILDEMDDLDDGT 409

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143478|emb|CBI22039.3| unnamed protein product [Vitis vinifera]

 Score =  105 bits (262), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 50/87 (57%), Positives = 66/87 (75%), Gaps = 7/87 (8%)

Query: 11  ILLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWYKYQKLQAGHANEDGM----- 65
           ++ + V + VAVFYFHD+FTWL+G GLFTI+VGVSLFNWYKY KLQ GH+NE  M     
Sbjct: 627 VVKEAVTILVAVFYFHDQFTWLKGVGLFTIMVGVSLFNWYKYLKLQTGHSNEVDMGDAAG 686

Query: 66  --LGSPEANASAKYVILEEIDDLDEGT 90
              GS ++N +A+YVILEE+D+ ++ T
Sbjct: 687 DIAGSLKSNINARYVILEEVDEQEDST 713

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485471|ref|XP_002277992.2| PREDICTED: probable sugar phosphate/phosphate translocator At1g06470-like [Vitis vinifera]

 Score =  102 bits (255), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 49/87 (56%), Positives = 65/87 (74%), Gaps = 7/87 (8%)

Query: 11  ILLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWYKYQKLQAGHANEDGM----- 65
           ++ + V + VAVFYFHD+FTWL+G GL TI+VGVSLFNWYKY KLQ GH+NE  M     
Sbjct: 424 VVKEAVTILVAVFYFHDQFTWLKGVGLSTIMVGVSLFNWYKYLKLQTGHSNEVDMGDTAG 483

Query: 66  --LGSPEANASAKYVILEEIDDLDEGT 90
              GS ++N +A+YVILEE+D+ ++ T
Sbjct: 484 DIAGSLKSNINARYVILEEVDEQEDST 510

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143479|emb|CBI22040.3| unnamed protein product [Vitis vinifera]

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 49/87 (56%), Positives = 65/87 (74%), Gaps = 7/87 (8%)

Query: 11  ILLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWYKYQKLQAGHANEDGM----- 65
           ++ + V + VAVFYFHD+FTWL+G GL TI+VGVSLFNWYKY KLQ GH+NE  M     
Sbjct: 443 VVKEAVTILVAVFYFHDQFTWLKGVGLSTIMVGVSLFNWYKYLKLQTGHSNEVDMGDTAG 502

Query: 66  --LGSPEANASAKYVILEEIDDLDEGT 90
              GS ++N +A+YVILEE+D+ ++ T
Sbjct: 503 DIAGSLKSNINARYVILEEVDEQEDST 529

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326505650|dbj|BAJ95496.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  102 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 49/84 (58%), Positives = 63/84 (75%), Gaps = 5/84 (5%)

Query: 11  ILLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWYKYQKLQAGHANEDGMLGSPE 70
           ++ + V + VAVFYFHDEFTWL+G GL TI+VGVSLFNWYKY+K + G  NEDG L SP 
Sbjct: 350 VVKEAVTILVAVFYFHDEFTWLKGVGLTTIMVGVSLFNWYKYEKFKKGQINEDG-LDSPS 408

Query: 71  ANASAKYVILEEIDD----LDEGT 90
            +  AKY+IL++++D    LDE T
Sbjct: 409 FSGDAKYIILDDLEDEDGFLDEDT 432

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|215704227|dbj|BAG93067.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  102 bits (253), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 46/78 (58%), Positives = 61/78 (78%), Gaps = 1/78 (1%)

Query: 11  ILLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWYKYQKLQAGHANEDGMLGSPE 70
           ++ + V + VAVFYFHDEFTWL+G GL TI+VGVSLFNWYKY+K + GH NED  + SP 
Sbjct: 349 VVKEAVTILVAVFYFHDEFTWLKGLGLATIMVGVSLFNWYKYEKYKKGHINEDE-VNSPS 407

Query: 71  ANASAKYVILEEIDDLDE 88
            +  AKY+IL++++D DE
Sbjct: 408 FDGDAKYIILDDLEDQDE 425

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222634967|gb|EEE65099.1| hypothetical protein OsJ_20151 [Oryza sativa Japonica Group]

 Score =  101 bits (252), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 46/78 (58%), Positives = 61/78 (78%), Gaps = 1/78 (1%)

Query: 11  ILLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWYKYQKLQAGHANEDGMLGSPE 70
           ++ + V + VAVFYFHDEFTWL+G GL TI+VGVSLFNWYKY+K + GH NED  + SP 
Sbjct: 319 VVKEAVTILVAVFYFHDEFTWLKGLGLATIMVGVSLFNWYKYEKYKKGHINEDE-VNSPS 377

Query: 71  ANASAKYVILEEIDDLDE 88
            +  AKY+IL++++D DE
Sbjct: 378 FDGDAKYIILDDLEDQDE 395

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357125272|ref|XP_003564319.1| PREDICTED: probable sugar phosphate/phosphate translocator At1g06470-like [Brachypodium distachyon]

 Score =  101 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 46/78 (58%), Positives = 60/78 (76%), Gaps = 1/78 (1%)

Query: 11  ILLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWYKYQKLQAGHANEDGMLGSPE 70
           ++ + V + VAVFYFHDEFTWL+GFGL TI+VGVSLFNWYKY+K + GH NED  + S  
Sbjct: 349 VVKESVTILVAVFYFHDEFTWLKGFGLITIMVGVSLFNWYKYEKFKKGHINED-EVSSSS 407

Query: 71  ANASAKYVILEEIDDLDE 88
            N  AKY+IL++++  DE
Sbjct: 408 FNGDAKYIILDDLEYQDE 425

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	90
TAIR|locus:2009190	414	AT1G06470 [Arabidopsis thalian	0.811	0.176	0.592	2e-19

TAIR|locus:2009190 AT1G06470 [Arabidopsis thaliana (taxid:3702)]

 Score = 236 (88.1 bits), Expect = 2.0e-19, P = 2.0e-19
 Identities = 45/76 (59%), Positives = 57/76 (75%)

Query:    11 ILLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWYKYQKLQAGH-ANEDGMLGSP 69
             ++ + V + VAVFYFHDEFTWL+G GL  I+VGVSLFNWYKY KLQ GH   E+  L +P
Sbjct:   336 VVKEAVTIVVAVFYFHDEFTWLKGVGLMIIMVGVSLFNWYKYDKLQKGHKTEEEKQLQAP 395

Query:    70 EANASAKYVILEEIDD 85
               + + KYVIL+E+DD
Sbjct:   396 --SQTGKYVILDEMDD 409


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.138   0.416    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       90        90   0.00091  102 3  11 22  0.46    29
                                                     29  0.39    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  529 (56 KB)
  Total size of DFA:  112 KB (2076 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.50u 0.17s 9.67t   Elapsed:  00:00:01
  Total cpu time:  9.50u 0.17s 9.67t   Elapsed:  00:00:01
  Start:  Mon May 20 22:06:02 2013   End:  Mon May 20 22:06:03 2013

GO:0005886 "plasma membrane" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

GO:0006863 "purine nucleobase transport" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	90
pfam03151	149	pfam03151, TPT, Triose-phosphate Transporter famil	8e-05

>gnl|CDD|217390 pfam03151, TPT, Triose-phosphate Transporter family

 Score = 38.3 bits (90), Expect = 8e-05
 Identities = 10/30 (33%), Positives = 18/30 (60%)

Query: 20  VAVFYFHDEFTWLRGFGLFTILVGVSLFNW 49
           ++V  F D  T+L   GL   ++GV L+++
Sbjct: 120 LSVIIFGDPVTFLNILGLAIAILGVVLYSY 149

This family includes transporters with a specificity for triose phosphate. Length = 149

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	90
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	98.87
KOG1443	349	consensus Predicted integral membrane protein [Fun	98.74
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	98.63
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	98.44
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	98.37
COG2076	106	EmrE Membrane transporters of cations and cationic	97.98
PRK09541	110	emrE multidrug efflux protein; Reviewed	97.97
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	97.95
PRK11431	105	multidrug efflux system protein; Provisional	97.91
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	97.88
PRK10650	109	multidrug efflux system protein MdtI; Provisional	97.87
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	97.79
PF13536	113	EmrE: Multidrug resistance efflux transporter	97.46
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	97.35
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	97.27
PLN00411	358	nodulin MtN21 family protein; Provisional	97.09
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	96.88
COG2510	140	Predicted membrane protein [Function unknown]	96.77
PRK10532	293	threonine and homoserine efflux system; Provisiona	96.76
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	96.76
PRK11272	292	putative DMT superfamily transporter inner membran	96.61
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	96.41
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	96.27
PRK15430	296	putative chloramphenical resistance permease RarD;	96.2
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	96.17
PRK11689	295	aromatic amino acid exporter; Provisional	96.16
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	96.15
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	96.12
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	95.95
PRK15430	296	putative chloramphenical resistance permease RarD;	95.94
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	95.89
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	95.83
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	95.43
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	95.27
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	95.2
COG0697	292	RhaT Permeases of the drug/metabolite transporter	95.18
PRK11689	295	aromatic amino acid exporter; Provisional	95.14
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	95.07
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	95.07
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	94.74
PLN00411	358	nodulin MtN21 family protein; Provisional	94.59
KOG1581	327	consensus UDP-galactose transporter related protei	93.85
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	93.63
COG2962	293	RarD Predicted permeases [General function predict	93.54
PRK11272	292	putative DMT superfamily transporter inner membran	93.45
KOG1580	337	consensus UDP-galactose transporter related protei	93.4
KOG4510	346	consensus Permease of the drug/metabolite transpor	93.15
COG0697	292	RhaT Permeases of the drug/metabolite transporter	92.35
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	92.32
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	91.32
PF08507	136	COPI_assoc: COPI associated protein; InterPro: IPR	91.23
PF06679	163	DUF1180: Protein of unknown function (DUF1180); In	90.57
PF04342	108	DUF486: Protein of unknown function, DUF486; Inter	90.15
KOG2765	416	consensus Predicted membrane protein [Function unk	89.39
COG2962	293	RarD Predicted permeases [General function predict	89.26
KOG3912	372	consensus Predicted integral membrane protein [Gen	88.0
COG3169	116	Uncharacterized protein conserved in bacteria [Fun	86.98
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	86.65
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	83.67
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	81.48
KOG1582	367	consensus UDP-galactose transporter related protei	81.08
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	80.67

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=98.87  E-value=1.9e-09  Score=72.62  Aligned_cols=43  Identities=23%  Similarity=0.413  Sum_probs=41.7

Q ss_pred             hhhHHHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHH
Q 048265            7 DSQRILLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNW   49 (90)
Q Consensus         7 ~VaGI~KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~   49 (90)
                      +|+|.+|+++++++|+++|||++|+.+++|++++++|+++|+|
T Consensus       111 ~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy  153 (153)
T PF03151_consen  111 SVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY  153 (153)
T ss_pred             HHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence            6899999999999999999999999999999999999999975

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=98.74  E-value=1.3e-08  Score=81.72  Aligned_cols=42  Identities=21%  Similarity=0.353  Sum_probs=40.8

Q ss_pred             hhhhHHHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHH
Q 048265            6 KDSQRILLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLF   47 (90)
Q Consensus         6 ~~VaGI~KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvly   47 (90)
                      -+|+||+||++|+++|+.+-+|.++.+|++|+++|+.|+.+|
T Consensus       272 lSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~  313 (349)
T KOG1443|consen  272 LSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH  313 (349)
T ss_pred             eeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence            379999999999999999999999999999999999999999

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=98.63  E-value=2e-09  Score=85.05  Aligned_cols=49  Identities=20%  Similarity=0.332  Sum_probs=46.7

Q ss_pred             hhhHHHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHHHHHHHH
Q 048265            7 DSQRILLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWYKYQKL   55 (90)
Q Consensus         7 ~VaGI~KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~~K~~~~   55 (90)
                      +|+|.+|.+++++.|+++|++|+|+.|.+|++++++|+++|++.|.+++
T Consensus       265 ~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~  313 (316)
T KOG1441|consen  265 SVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEK  313 (316)
T ss_pred             hhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhh
Confidence            7999999999999999999999999999999999999999999998654

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=98.44  E-value=2.3e-07  Score=72.35  Aligned_cols=45  Identities=20%  Similarity=0.387  Sum_probs=43.2

Q ss_pred             hhhHHHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHHHH
Q 048265            7 DSQRILLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWYK   51 (90)
Q Consensus         7 ~VaGI~KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~~K   51 (90)
                      ++++.+|.++++++|+++|||++|+.+++|.+++++|+.+|++.|
T Consensus       306 sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~k  350 (350)
T PTZ00343        306 AVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLFK  350 (350)
T ss_pred             HHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhcC
Confidence            789999999999999999999999999999999999999998764

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=98.37  E-value=1.7e-07  Score=70.35  Aligned_cols=47  Identities=21%  Similarity=0.314  Sum_probs=44.2

Q ss_pred             hhhHHHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHHHHHH
Q 048265            7 DSQRILLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWYKYQ   53 (90)
Q Consensus         7 ~VaGI~KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~~K~~   53 (90)
                      ++.|.+|.++++++|+++|||++|+.+++|.+++++|+.+|++.|.+
T Consensus       251 sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~~  297 (302)
T TIGR00817       251 SVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKAQ  297 (302)
T ss_pred             HHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhcc
Confidence            67899999999999999999999999999999999999999987754

specificities overlap.

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=97.98  E-value=1e-05  Score=55.77  Aligned_cols=39  Identities=23%  Similarity=0.273  Sum_probs=36.3

Q ss_pred             HHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHHH
Q 048265           12 LLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWY   50 (90)
Q Consensus        12 ~KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~~   50 (90)
                      ++.+.|.++|+++|+|++++.+++|++++++||+..|..
T Consensus        66 iG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~  104 (106)
T COG2076          66 IGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLG  104 (106)
T ss_pred             HHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhc
Confidence            577899999999999999999999999999999999764

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=97.97  E-value=1.4e-05  Score=54.68  Aligned_cols=40  Identities=15%  Similarity=0.160  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHHHH
Q 048265           12 LLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWYK   51 (90)
Q Consensus        12 ~KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~~K   51 (90)
                      +.-+.+.++|+++|+|++|+.+++|++++++||++.|...
T Consensus        66 lG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~  105 (110)
T PRK09541         66 VGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS  105 (110)
T ss_pred             HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            4667889999999999999999999999999999997543

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=97.95  E-value=1e-05  Score=56.26  Aligned_cols=46  Identities=20%  Similarity=0.259  Sum_probs=39.3

Q ss_pred             chhhhHHHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHHHH
Q 048265            5 YKDSQRILLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWYK   51 (90)
Q Consensus         5 ~~~VaGI~KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~~K   51 (90)
                      |---+|+ .-+.+.++|+++|||++|+.+++|++++++||++.|...
T Consensus        60 Yavw~Gi-G~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~  105 (120)
T PRK10452         60 YALWEGI-GILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT  105 (120)
T ss_pred             HHHHHHH-HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence            4334455 788899999999999999999999999999999996544

>PRK11431 multidrug efflux system protein; Provisional

Probab=97.91  E-value=1.7e-05  Score=53.93  Aligned_cols=39  Identities=10%  Similarity=0.042  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHHH
Q 048265           12 LLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWY   50 (90)
Q Consensus        12 ~KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~~   50 (90)
                      ++.+.+.++|+++|||++|+.+++|++++++||+..|..
T Consensus        65 iG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l~  103 (105)
T PRK11431         65 IGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKLS  103 (105)
T ss_pred             HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcc
Confidence            567889999999999999999999999999999998653

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=97.88  E-value=1.8e-05  Score=59.99  Aligned_cols=48  Identities=19%  Similarity=0.415  Sum_probs=44.3

Q ss_pred             hhhHHHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHHHHHHH
Q 048265            7 DSQRILLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWYKYQK   54 (90)
Q Consensus         7 ~VaGI~KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~~K~~~   54 (90)
                      ++.+..+-.+++++|+++|++++++.+++|+++++.|+.+|++.|.++
T Consensus       255 t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~  302 (303)
T PF08449_consen  255 TIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKK  302 (303)
T ss_pred             hhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccC
Confidence            567788999999999999999999999999999999999999998753

; GO: 0055085 transmembrane transport

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=97.87  E-value=2.2e-05  Score=53.84  Aligned_cols=38  Identities=13%  Similarity=0.211  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHH
Q 048265           12 LLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNW   49 (90)
Q Consensus        12 ~KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~   49 (90)
                      ++.+.+.++|+++|||++|+.+++|+++++.||++.|.
T Consensus        71 iG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lkl  108 (109)
T PRK10650         71 FGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIKL  108 (109)
T ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcc
Confidence            56788999999999999999999999999999999864

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=97.79  E-value=3.6e-05  Score=52.05  Aligned_cols=37  Identities=19%  Similarity=0.153  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHH
Q 048265           12 LLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFN   48 (90)
Q Consensus        12 ~KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN   48 (90)
                      ..-+.+.++|+++|||++|+.+++|++++++||++..
T Consensus        72 l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         72 LNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence            4567889999999999999999999999999999864

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=97.46  E-value=0.00021  Score=47.21  Aligned_cols=39  Identities=21%  Similarity=0.480  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHHHHH
Q 048265           14 QYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWYKY   52 (90)
Q Consensus        14 eiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~~K~   52 (90)
                      -+++.++|.++|+|++++.+++|.+++++||++.++...
T Consensus        71 pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~  109 (113)
T PF13536_consen   71 PIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDL  109 (113)
T ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence            456888999999999999999999999999999987665

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=97.35  E-value=0.00037  Score=48.58  Aligned_cols=34  Identities=26%  Similarity=0.495  Sum_probs=28.4

Q ss_pred             HHHHHHH--HHhcCccchhhhhHHHHHHhHHHHHHH
Q 048265           16 VNVQVAV--FYFHDEFTWLRGFGLFTILVGVSLFNW   49 (90)
Q Consensus        16 ltIiisv--~iFgd~lT~ln~vGl~iii~GVvlyN~   49 (90)
                      ++.++++  ++|||++|+.+++|++++++||++.+.
T Consensus        87 ~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~  122 (129)
T PRK02971         87 LVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINL  122 (129)
T ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcc
Confidence            3444444  489999999999999999999999875

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=97.27  E-value=0.00073  Score=42.68  Aligned_cols=40  Identities=18%  Similarity=0.417  Sum_probs=35.5

Q ss_pred             hHHHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHH
Q 048265            9 QRILLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFN   48 (90)
Q Consensus         9 aGI~KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN   48 (90)
                      ....--++++++++++++|++++.+++|+++++.|+++.+
T Consensus        86 ~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   86 LQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS  125 (126)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            3445668899999999999999999999999999999875

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=97.09  E-value=0.0012  Score=52.40  Aligned_cols=43  Identities=19%  Similarity=0.246  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHHHHHHH
Q 048265           12 LLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWYKYQK   54 (90)
Q Consensus        12 ~KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~~K~~~   54 (90)
                      +--+.++++|++++||++++..++|.+++++|+.+.++.|-.+
T Consensus       291 L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~~~~  333 (358)
T PLN00411        291 LSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKANE  333 (358)
T ss_pred             HHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            4457789999999999999999999999999999998765433

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.88  E-value=0.0011  Score=53.11  Aligned_cols=49  Identities=20%  Similarity=0.326  Sum_probs=43.4

Q ss_pred             hhhHHHHHHHHHHHHHHHhcC-ccchhhhhHHHHHHhHHHHHHHHHHHHHH
Q 048265            7 DSQRILLQYVNVQVAVFYFHD-EFTWLRGFGLFTILVGVSLFNWYKYQKLQ   56 (90)
Q Consensus         7 ~VaGI~KeiltIiisv~iFgd-~lT~ln~vGl~iii~GVvlyN~~K~~~~~   56 (90)
                      ++.| .|..++..++.+.|+| ++++.|++|+.+.++|=++|++.++++++
T Consensus       258 tivG-~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~k~  307 (314)
T KOG1444|consen  258 TIVG-AKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRKKK  307 (314)
T ss_pred             eehh-hhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhhcc
Confidence            4678 8999999888888887 79999999999999999999999987653

>COG2510 Predicted membrane protein [Function unknown]

Probab=96.77  E-value=0.00083  Score=48.54  Aligned_cols=35  Identities=14%  Similarity=0.399  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHH
Q 048265           14 QYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFN   48 (90)
Q Consensus        14 eiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN   48 (90)
                      -++++++|++++||++|..+++|.+++.+|+++..
T Consensus       104 vvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs  138 (140)
T COG2510         104 VVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS  138 (140)
T ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence            47899999999999999999999999999998763

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=96.76  E-value=0.0035  Score=47.29  Aligned_cols=44  Identities=7%  Similarity=0.033  Sum_probs=37.8

Q ss_pred             hhHHHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHHHH
Q 048265            8 SQRILLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWYK   51 (90)
Q Consensus         8 VaGI~KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~~K   51 (90)
                      +..-.--+..+++|+++|||++++.+++|.+++++|++++.+..
T Consensus       240 ~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~  283 (293)
T PRK10532        240 TLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTI  283 (293)
T ss_pred             HHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcC
Confidence            33445567899999999999999999999999999999997554

>TIGR00803 nst UDP-galactose transporter

Probab=96.76  E-value=0.0013  Score=47.56  Aligned_cols=43  Identities=14%  Similarity=0.142  Sum_probs=39.2

Q ss_pred             chhhhHHHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHH
Q 048265            5 YKDSQRILLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLF   47 (90)
Q Consensus         5 ~~~VaGI~KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvly   47 (90)
                      .|+++.-..-++++++|+++||+++|+.+++|..++++|+.+|
T Consensus       180 ~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY  222 (222)
T TIGR00803       180 TKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY  222 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence            4677888888999999999999999999999999999998765

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=96.61  E-value=0.0038  Score=46.96  Aligned_cols=42  Identities=19%  Similarity=0.109  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHHHHH
Q 048265           11 ILLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWYKY   52 (90)
Q Consensus        11 I~KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~~K~   52 (90)
                      -+--+..+++|++++||++|+..++|.++++.|+++.++.+.
T Consensus       247 ~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~  288 (292)
T PRK11272        247 YVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKY  288 (292)
T ss_pred             HHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence            445577889999999999999999999999999999877554

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=96.41  E-value=0.0043  Score=46.30  Aligned_cols=33  Identities=15%  Similarity=0.433  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHhcCccchhhhhHHHHHHhHHHH
Q 048265           14 QYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSL   46 (90)
Q Consensus        14 eiltIiisv~iFgd~lT~ln~vGl~iii~GVvl   46 (90)
                      =++.+++|+++|||++|+..++|++++++|+++
T Consensus       248 pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l  280 (281)
T TIGR03340       248 IVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV  280 (281)
T ss_pred             HHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence            377889999999999999999999999999986

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=96.27  E-value=0.006  Score=39.85  Aligned_cols=35  Identities=20%  Similarity=0.237  Sum_probs=20.6

Q ss_pred             chhhhHHHHHHHHHHHHHHHhcCccchhhhhHHHHH
Q 048265            5 YKDSQRILLQYVNVQVAVFYFHDEFTWLRGFGLFTI   40 (90)
Q Consensus         5 ~~~VaGI~KeiltIiisv~iFgd~lT~ln~vGl~ii   40 (90)
                      |---+|+ ..+.+.++|+++|||++|+.+++|++++
T Consensus        59 Yavw~g~-g~v~~~~~~~~~f~E~~s~~~~~gi~lI   93 (93)
T PF00893_consen   59 YAVWTGL-GIVGVTLVGVFFFGESLSLSKWLGIGLI   93 (93)
T ss_dssp             HHHHHHH-HHHHHHHHHHHHH--------HHHHHHH
T ss_pred             HHHHHHH-HHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence            3333444 6688999999999999999999999875

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=96.20  E-value=0.021  Score=43.13  Aligned_cols=44  Identities=11%  Similarity=0.053  Sum_probs=37.2

Q ss_pred             hHHHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHHHHH
Q 048265            9 QRILLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWYKY   52 (90)
Q Consensus         9 aGI~KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~~K~   52 (90)
                      ..-+.-++.+++|+++|||++|+.+++|++++++|+.++...-.
T Consensus       245 ~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~~~  288 (296)
T PRK15430        245 FQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMDAI  288 (296)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455677889999999999999999999999999888876554

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=96.17  E-value=0.0033  Score=50.14  Aligned_cols=39  Identities=21%  Similarity=0.603  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHHHHH
Q 048265           14 QYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWYKY   52 (90)
Q Consensus        14 eiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~~K~   52 (90)
                      +...+++++++||.+++|+-++|++++++|+++||....
T Consensus       270 d~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~  308 (334)
T PF06027_consen  270 DFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAES  308 (334)
T ss_pred             hHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCC
Confidence            456789999999999999999999999999999987553

Some of the sequences in this family are annotated as putative membrane proteins.

>PRK11689 aromatic amino acid exporter; Provisional

Probab=96.16  E-value=0.0088  Score=45.13  Aligned_cols=39  Identities=10%  Similarity=0.121  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHH
Q 048265           11 ILLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNW   49 (90)
Q Consensus        11 I~KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~   49 (90)
                      .+--++.+++|++++||++|+..++|.++++.|+++...
T Consensus       249 ~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~  287 (295)
T PRK11689        249 YFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWL  287 (295)
T ss_pred             HhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhh
Confidence            344578899999999999999999999999999987744

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=96.15  E-value=0.0083  Score=44.78  Aligned_cols=37  Identities=14%  Similarity=0.214  Sum_probs=33.6

Q ss_pred             HHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHH
Q 048265           13 LQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNW   49 (90)
Q Consensus        13 KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~   49 (90)
                      .-+++.++|+++|||++++.+++|++++++|+++...
T Consensus        99 ~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~  135 (281)
T TIGR03340        99 SPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGL  135 (281)
T ss_pred             hHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence            4678889999999999999999999999999998754

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>TIGR00688 rarD rarD protein

Probab=96.12  E-value=0.0084  Score=43.87  Aligned_cols=36  Identities=11%  Similarity=0.143  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHH
Q 048265           13 LQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFN   48 (90)
Q Consensus        13 KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN   48 (90)
                      --+.+.++|.++|+|++++.+++|+++.++||++..
T Consensus       106 ~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~  141 (256)
T TIGR00688       106 NPLVMVALGRVFLKERISRFQFIAVIIATLGVISNI  141 (256)
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence            456788999999999999999999999999998764

This uncharacterized protein is predicted to have many membrane-spanning domains.

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=95.95  E-value=0.01  Score=42.76  Aligned_cols=36  Identities=11%  Similarity=-0.086  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHH
Q 048265           14 QYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNW   49 (90)
Q Consensus        14 eiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~   49 (90)
                      -+++.++|.++++|++++.+++|++++++|+++...
T Consensus        84 P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~  119 (260)
T TIGR00950        84 PLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLS  119 (260)
T ss_pred             HHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhcc
Confidence            468899999999999999999999999999999753

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=95.94  E-value=0.012  Score=44.52  Aligned_cols=36  Identities=14%  Similarity=0.325  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHH
Q 048265           13 LQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFN   48 (90)
Q Consensus        13 KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN   48 (90)
                      --+++.++|+++++|++++.+++|+++.++||++.-
T Consensus       109 ~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~  144 (296)
T PRK15430        109 NPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL  144 (296)
T ss_pred             HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence            346788999999999999999999999999999864

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=95.89  E-value=0.013  Score=44.28  Aligned_cols=39  Identities=18%  Similarity=0.261  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHHHH
Q 048265           13 LQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWYK   51 (90)
Q Consensus        13 KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~~K   51 (90)
                      -=++.+++|++++||++++..++|.+++++|+.+-.+.+
T Consensus       251 ~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~  289 (299)
T PRK11453        251 VPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGL  289 (299)
T ss_pred             HHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcch
Confidence            346788999999999999999999999999998776544

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=95.83  E-value=0.016  Score=41.80  Aligned_cols=39  Identities=10%  Similarity=0.112  Sum_probs=34.1

Q ss_pred             hhhHHHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHH
Q 048265            7 DSQRILLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVS   45 (90)
Q Consensus         7 ~VaGI~KeiltIiisv~iFgd~lT~ln~vGl~iii~GVv   45 (90)
                      ++.....-++++++|+++|||++++.+++|.+++++|+.
T Consensus       222 s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~~  260 (260)
T TIGR00950       222 SILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAVL  260 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence            445566678899999999999999999999999999973

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=95.43  E-value=0.016  Score=44.22  Aligned_cols=44  Identities=14%  Similarity=0.138  Sum_probs=37.0

Q ss_pred             hhHHHHHHHHHHHHHHHhcCccchhhh----hHHHHHHhHHHHHHHHH
Q 048265            8 SQRILLQYVNVQVAVFYFHDEFTWLRG----FGLFTILVGVSLFNWYK   51 (90)
Q Consensus         8 VaGI~KeiltIiisv~iFgd~lT~ln~----vGl~iii~GVvlyN~~K   51 (90)
                      +...+--+..+++|+++|||+.++.++    +|.++++.|+++....|
T Consensus       243 ~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~~~  290 (290)
T TIGR00776       243 SLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGIGK  290 (290)
T ss_pred             HHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhccC
Confidence            344455678889999999999999999    99999999999876543

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=95.27  E-value=0.038  Score=41.44  Aligned_cols=40  Identities=23%  Similarity=0.384  Sum_probs=34.5

Q ss_pred             hhHHHH---HHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHH
Q 048265            8 SQRILL---QYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLF   47 (90)
Q Consensus         8 VaGI~K---eiltIiisv~iFgd~lT~ln~vGl~iii~GVvly   47 (90)
                      .++++|   -+++++++.++++|++++.+++|++++++|+++.
T Consensus        93 ~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~  135 (302)
T TIGR00817        93 FTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALA  135 (302)
T ss_pred             HHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhh
Confidence            345555   5778999999999999999999999999999864

specificities overlap.

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=95.20  E-value=0.019  Score=43.42  Aligned_cols=45  Identities=13%  Similarity=0.158  Sum_probs=40.8

Q ss_pred             hhHHHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHHHHH
Q 048265            8 SQRILLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWYKY   52 (90)
Q Consensus         8 VaGI~KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~~K~   52 (90)
                      +....|-+.|.++++++++.++++.+|+++++.++|+++......
T Consensus        48 vl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~   92 (244)
T PF04142_consen   48 VLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSS   92 (244)
T ss_pred             HHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCc
Confidence            556789999999999999999999999999999999999866554

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=95.18  E-value=0.054  Score=38.56  Aligned_cols=40  Identities=15%  Similarity=0.205  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHHH
Q 048265           11 ILLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWY   50 (90)
Q Consensus        11 I~KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~~   50 (90)
                      ...-+..+++++++|+|++++..++|.+++++|+++.+..
T Consensus       249 ~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~  288 (292)
T COG0697         249 LLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR  288 (292)
T ss_pred             HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence            4455566667999999999999999999999999999766

>PRK11689 aromatic amino acid exporter; Provisional

Probab=95.14  E-value=0.026  Score=42.59  Aligned_cols=36  Identities=25%  Similarity=0.337  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHH
Q 048265           14 QYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNW   49 (90)
Q Consensus        14 eiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~   49 (90)
                      =+++++++.++++|++++.+++|+++.++|+++.-.
T Consensus       102 Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~  137 (295)
T PRK11689        102 PSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLG  137 (295)
T ss_pred             HHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheec
Confidence            466778999999999999999999999999988753

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=95.07  E-value=0.033  Score=42.02  Aligned_cols=35  Identities=14%  Similarity=0.256  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHH
Q 048265           15 YVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNW   49 (90)
Q Consensus        15 iltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~   49 (90)
                      +++.+++.++++|+++..+++|+++.++|+++...
T Consensus        98 i~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~  132 (299)
T PRK11453         98 FFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIE  132 (299)
T ss_pred             HHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhcc
Confidence            57888999999999999999999999999998753

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=95.07  E-value=0.014  Score=46.59  Aligned_cols=38  Identities=13%  Similarity=0.392  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHHHHH
Q 048265           15 YVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWYKY   52 (90)
Q Consensus        15 iltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~~K~   52 (90)
                      ..++++|++++++++++.+++|.++|++|+++......
T Consensus       117 ~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~  154 (334)
T PF06027_consen  117 PFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDV  154 (334)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecc
Confidence            56889999999999999999999999999998866654

Some of the sequences in this family are annotated as putative membrane proteins.

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=94.74  E-value=0.042  Score=43.00  Aligned_cols=34  Identities=15%  Similarity=0.311  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHH
Q 048265           15 YVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFN   48 (90)
Q Consensus        15 iltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN   48 (90)
                      +++++++.++++|++++.+++|++++++||.+..
T Consensus       152 vft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~  185 (350)
T PTZ00343        152 VFTALLSILFLKQFLNLYAYLSLIPIVGGVALAS  185 (350)
T ss_pred             HHHHHHHHHHhCCCccHHHHHHHHHHHHHHHhee
Confidence            5688999999999999999999999999999764

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=94.59  E-value=0.051  Score=43.22  Aligned_cols=38  Identities=16%  Similarity=0.388  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHH------hcCccchhhhhHHHHHHhHHHHHHHHH
Q 048265           14 QYVNVQVAVFY------FHDEFTWLRGFGLFTILVGVSLFNWYK   51 (90)
Q Consensus        14 eiltIiisv~i------Fgd~lT~ln~vGl~iii~GVvlyN~~K   51 (90)
                      -+.+.++++++      |+|++++.+++|++++++|+++.-.++
T Consensus       115 P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~  158 (358)
T PLN00411        115 PALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYH  158 (358)
T ss_pred             HHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHcc
Confidence            46788889888      799999999999999999999875433

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=93.85  E-value=0.057  Score=43.66  Aligned_cols=42  Identities=14%  Similarity=0.217  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHHHHHH
Q 048265           12 LLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWYKYQ   53 (90)
Q Consensus        12 ~KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~~K~~   53 (90)
                      .+.+..|++|.++||.++++.+++|..+.+.|+.+=.+-|..
T Consensus       276 tRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~~  317 (327)
T KOG1581|consen  276 TRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLKKK  317 (327)
T ss_pred             HHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHHHHh
Confidence            467889999999999999999999999999999988887775

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=93.63  E-value=0.052  Score=41.17  Aligned_cols=42  Identities=12%  Similarity=0.222  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHHHHHH
Q 048265           12 LLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWYKYQ   53 (90)
Q Consensus        12 ~KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~~K~~   53 (90)
                      .|-+.+++++++++|.+.++.++++.+++.+|++++...+..
T Consensus        99 ~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~  140 (303)
T PF08449_consen   99 SKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSS  140 (303)
T ss_pred             hHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccc
Confidence            467788999999999999999999999999999999887754

; GO: 0055085 transmembrane transport

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=93.54  E-value=0.23  Score=39.71  Aligned_cols=44  Identities=16%  Similarity=0.138  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHHHHHHHH
Q 048265           12 LLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWYKYQKL   55 (90)
Q Consensus        12 ~KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~~K~~~~   55 (90)
                      +.-.+..++|+++|||+++..+++.++.+-+|+++|-...+.+.
T Consensus       246 i~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~l~~~  289 (293)
T COG2962         246 IEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDGLYTA  289 (293)
T ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567889999999999999999999999999999998887644

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=93.45  E-value=0.12  Score=38.86  Aligned_cols=35  Identities=20%  Similarity=0.202  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHH
Q 048265           14 QYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNW   49 (90)
Q Consensus        14 eiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~   49 (90)
                      -+++.++|.+ |||++++..++|+++.++|+++.+.
T Consensus       107 Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~  141 (292)
T PRK11272        107 PLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNS  141 (292)
T ss_pred             HHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhc
Confidence            3566777865 8999999999999999999998854

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=93.40  E-value=0.15  Score=40.85  Aligned_cols=37  Identities=8%  Similarity=0.221  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHH
Q 048265           13 LQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNW   49 (90)
Q Consensus        13 KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~   49 (90)
                      +-..||++|+++|+.+++..+|+|-++++.+..+=..
T Consensus       277 RKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~  313 (337)
T KOG1580|consen  277 RKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADVV  313 (337)
T ss_pred             HHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhh
Confidence            3467999999999999999999999999998765433

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=93.15  E-value=0.048  Score=44.08  Aligned_cols=39  Identities=21%  Similarity=0.357  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHHHHH
Q 048265           14 QYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWYKY   52 (90)
Q Consensus        14 eiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~~K~   52 (90)
                      -++|+++|+.+.+||+|..+.+|..+.+.||++..+.-+
T Consensus       134 Pvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpF  172 (346)
T KOG4510|consen  134 PVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPF  172 (346)
T ss_pred             hHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCc
Confidence            478999999999999999999999999999999876543

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=92.35  E-value=0.2  Score=35.61  Aligned_cols=39  Identities=21%  Similarity=0.271  Sum_probs=32.0

Q ss_pred             HHHHHHHHH-HHhcCccchhhhhHHHHHHhHHHHHHHHHH
Q 048265           14 QYVNVQVAV-FYFHDEFTWLRGFGLFTILVGVSLFNWYKY   52 (90)
Q Consensus        14 eiltIiisv-~iFgd~lT~ln~vGl~iii~GVvlyN~~K~   52 (90)
                      -+.+.+++. ++++|++++.+++|+++.++|+++.....-
T Consensus       107 p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~  146 (292)
T COG0697         107 PLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGG  146 (292)
T ss_pred             HHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCC
Confidence            356677785 666999999999999999999999866443

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=92.32  E-value=0.11  Score=36.06  Aligned_cols=33  Identities=18%  Similarity=0.172  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHhcCccchhhhhHHHHHHhHHHH
Q 048265           14 QYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSL   46 (90)
Q Consensus        14 eiltIiisv~iFgd~lT~ln~vGl~iii~GVvl   46 (90)
                      =+.|++.+.++.++..++..++|++++++||.+
T Consensus        79 fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L  111 (113)
T PF10639_consen   79 FVFTALTGWLLGEEVISRRTWLGMALILAGVAL  111 (113)
T ss_pred             HHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence            367888998888888899999999999999975

Many members are annotated as potential transmembrane proteins.

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=91.32  E-value=0.15  Score=38.88  Aligned_cols=36  Identities=25%  Similarity=0.245  Sum_probs=31.4

Q ss_pred             HHHHHHHHHhcCccchhh----hhHHHHHHhHHHHHHHHH
Q 048265           16 VNVQVAVFYFHDEFTWLR----GFGLFTILVGVSLFNWYK   51 (90)
Q Consensus        16 ltIiisv~iFgd~lT~ln----~vGl~iii~GVvlyN~~K   51 (90)
                      ...++|.++|||+.|..+    ++|++++++|+++....+
T Consensus        99 ~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~  138 (290)
T TIGR00776        99 GGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSK  138 (290)
T ss_pred             HHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEecc
Confidence            556789999999999999    999999999999985543

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []

Probab=91.23  E-value=0.84  Score=31.51  Aligned_cols=40  Identities=15%  Similarity=0.069  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHHHHH
Q 048265           12 LLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWYKY   52 (90)
Q Consensus        12 ~KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~~K~   52 (90)
                      -|-+.-+++|.+.++. -....++|..++++|++..-..-.
T Consensus        69 GRGlfyif~G~l~~~~-~~~~~i~g~~~~~~G~~~i~l~~~  108 (136)
T PF08507_consen   69 GRGLFYIFLGTLCLGQ-SILSIIIGLLLFLVGVIYIILGFF  108 (136)
T ss_pred             HHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3667788899999998 223467789999999887755443

In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].

>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins

Probab=90.57  E-value=0.38  Score=35.34  Aligned_cols=52  Identities=17%  Similarity=0.278  Sum_probs=23.3

Q ss_pred             hHHHHHHhHHHHHHHHHHHHH-HhcccCCCCCCCCCCCCCCcceEeccccccccCCC
Q 048265           35 FGLFTILVGVSLFNWYKYQKL-QAGHANEDGMLGSPEANASAKYVILEEIDDLDEGT   90 (90)
Q Consensus        35 vGl~iii~GVvlyN~~K~~~~-~~~~~~~~~~~~s~~~~~~~~y~~~~~~~d~~~~~   90 (90)
                      +|+..+++--+++..+|..+. ++.+.|  ++++.+  +..-+-.+|+|+|||||.|
T Consensus       102 ~g~s~l~i~yfvir~~R~r~~~rktRkY--gvl~~~--~~~~Em~pL~~ddedeD~T  154 (163)
T PF06679_consen  102 VGLSALAILYFVIRTFRLRRRNRKTRKY--GVLTTR--AENVEMAPLEEDDEDEDST  154 (163)
T ss_pred             HHHHHHHHHHHHHHHHhhccccccceee--cccCCC--cccceecccCCCccccccc
Confidence            344444444445555555431 122233  333333  2334566775555555543

Their function is unknown.

>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function

Probab=90.15  E-value=0.41  Score=33.37  Aligned_cols=43  Identities=26%  Similarity=0.397  Sum_probs=31.4

Q ss_pred             cchhhhHHHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHH
Q 048265            4 QYKDSQRILLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSL   46 (90)
Q Consensus         4 ~~~~VaGI~KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvl   46 (90)
                      |-|-+.=++-=.+-+.+|+++++|+++|..+.|.++++.+|..
T Consensus        63 QLKi~QEvitL~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~f  105 (108)
T PF04342_consen   63 QLKIIQEVITLVVFAPFSVFYLGEPLKWNYLWAFLCILGAVYF  105 (108)
T ss_pred             HHHHHHHHHhhheeHHHHHHHhCCCccHHHHHHHHHHHHhhhe
Confidence            3443433444444567899999999999999999998887653

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=89.39  E-value=0.099  Score=43.47  Aligned_cols=39  Identities=15%  Similarity=0.315  Sum_probs=35.0

Q ss_pred             HHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHHHHHH
Q 048265           15 YVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWYKYQ   53 (90)
Q Consensus        15 iltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~~K~~   53 (90)
                      ..|+++|+.+=+|+||+.++++.++.++||++++.++-.
T Consensus       197 ~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~  235 (416)
T KOG2765|consen  197 FFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSK  235 (416)
T ss_pred             HHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEecccc
Confidence            468888988889999999999999999999999888753

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=89.26  E-value=0.5  Score=37.79  Aligned_cols=33  Identities=18%  Similarity=0.289  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHhcCccchhhhhHHHHHHhHHHHH
Q 048265           15 YVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLF   47 (90)
Q Consensus        15 iltIiisv~iFgd~lT~ln~vGl~iii~GVvly   47 (90)
                      .+.+++|.++|+|++++.+++-.++..+||..-
T Consensus       110 L~~VllG~lflkErls~~Q~iAV~lA~~GV~~~  142 (293)
T COG2962         110 LVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQ  142 (293)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHH
Confidence            567899999999999999999999999999754

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=88.00  E-value=0.62  Score=38.11  Aligned_cols=44  Identities=20%  Similarity=0.280  Sum_probs=39.0

Q ss_pred             hhhHHHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHHH
Q 048265            7 DSQRILLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWY   50 (90)
Q Consensus         7 ~VaGI~KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~~   50 (90)
                      .+.-.+++..+-+++...+.|.+..++++|+++.+.|+++||-.
T Consensus       292 mllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~Gi~lY~~i  335 (372)
T KOG3912|consen  292 MLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMGIILYNQI  335 (372)
T ss_pred             HHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566788888899999999999999999999999999999963

>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=86.98  E-value=1.6  Score=30.70  Aligned_cols=44  Identities=25%  Similarity=0.449  Sum_probs=32.4

Q ss_pred             cchhhhHHHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHH
Q 048265            4 QYKDSQRILLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLF   47 (90)
Q Consensus         4 ~~~~VaGI~KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvly   47 (90)
                      |.|-..-++--++-..+|+++.+||+.|-.+.|.++++.||.+.
T Consensus        70 QLK~mQEVItL~iFv~Fsvfyl~epl~~~~l~a~~~i~gav~fi  113 (116)
T COG3169          70 QLKTMQEVITLAIFVPFSVFYLKEPLRWNYLWAFLLILGAVYFI  113 (116)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHh
Confidence            44444444444455567999999999999999999888887654

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=86.65  E-value=1  Score=36.68  Aligned_cols=42  Identities=12%  Similarity=0.271  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHHHHHH
Q 048265           12 LLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWYKYQ   53 (90)
Q Consensus        12 ~KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~~K~~   53 (90)
                      +--+++.++|+.+|+-++|...++|..+++..+.+|+.+++.
T Consensus       285 ~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P~~  326 (345)
T KOG2234|consen  285 VAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYPAR  326 (345)
T ss_pred             HHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCCcc
Confidence            345778889999999999999999999999999999966664

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=83.67  E-value=3.1  Score=34.02  Aligned_cols=42  Identities=17%  Similarity=0.267  Sum_probs=39.7

Q ss_pred             hhhHHHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHH
Q 048265            7 DSQRILLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFN   48 (90)
Q Consensus         7 ~VaGI~KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN   48 (90)
                      .|....|=.-|.++++++.+.++++++|.-+++.++||++..
T Consensus       122 qVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ  163 (345)
T KOG2234|consen  122 QVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQ  163 (345)
T ss_pred             hhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Confidence            577889999999999999999999999999999999999986

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=81.48  E-value=1.6  Score=34.14  Aligned_cols=42  Identities=21%  Similarity=0.280  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHHHH
Q 048265           10 RILLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWYK   51 (90)
Q Consensus        10 GI~KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~~K   51 (90)
                      |-+.=+...++|.++.||+++...++|.+++++|+++.-.+.
T Consensus        83 g~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~  124 (300)
T PF05653_consen   83 GALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFA  124 (300)
T ss_pred             HhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeC
Confidence            344456778899999999999999999999999998775443

>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=81.08  E-value=2  Score=35.09  Aligned_cols=40  Identities=18%  Similarity=0.256  Sum_probs=35.0

Q ss_pred             HHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHHHH
Q 048265           12 LLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWYK   51 (90)
Q Consensus        12 ~KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~~K   51 (90)
                      .+-++||++|.++|-.|||..-.-|..+++.||.+=-+.|
T Consensus       295 aRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk  334 (367)
T KOG1582|consen  295 ARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSK  334 (367)
T ss_pred             hHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccC
Confidence            3567999999999999999999999999999998765555

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=80.67  E-value=1.2  Score=36.34  Aligned_cols=52  Identities=15%  Similarity=0.168  Sum_probs=47.3

Q ss_pred             hhhHHHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHHHHHHHHHhc
Q 048265            7 DSQRILLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWYKYQKLQAG   58 (90)
Q Consensus         7 ~VaGI~KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~~K~~~~~~~   58 (90)
                      +|+|-.|-+.=-++++++++|..+.+-|-|-.+++.|-.+|.+-|-++.+..
T Consensus       285 nISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~em~~~  336 (347)
T KOG1442|consen  285 NISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEHEMRKA  336 (347)
T ss_pred             eecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHHHHHhh
Confidence            7899999999999999999999999999999999999999999887665443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	90
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	98.17
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.0

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=98.17  E-value=1.3e-06  Score=60.53  Aligned_cols=41  Identities=15%  Similarity=0.128  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHHHH
Q 048265           11 ILLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWYK   51 (90)
Q Consensus        11 I~KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~~K   51 (90)
                      -+.-++++++|+++|||++|+.+++|++++++||++.+..+
T Consensus        65 ~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~  105 (137)
T 2i68_A           65 GVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (137)
T ss_dssp             HHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            35678899999999999999999999999999999997543

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.00  E-value=4.9e-06  Score=54.84  Aligned_cols=40  Identities=15%  Similarity=0.169  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHHHH
Q 048265           12 LLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWYK   51 (90)
Q Consensus        12 ~KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~~K   51 (90)
                      +.-++++++|+++|||++|+.+++|++++++||++.+..+
T Consensus        66 ~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~  105 (110)
T 3b5d_A           66 VGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (110)
T ss_pred             HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            4678899999999999999999999999999999997643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00