Citrus Sinensis ID: 048269

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-----
Protein Sequence
APVDPGHLVRVCTILYQQQYSPESRLHSSLSSCNFNLTHEFFLQICNNFPLSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEKPDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNEEGVVMFEEVGKKLREVGLADLADIFQRYGKKMATRERRRNRAIEP
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHccccccHHHHHHHHHHccccccHHHHHHHHHHccccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHccccccccccHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHcccccHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccHHHHHHHHHHHHHccccccEEHHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHcccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEHHHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHcccHHHHHHHccccc
Coil and Loop (DISEMBL)
APVDPGHLVRVCTILYqqqyspesrlhsslsscnfnlTHEFFLQICnnfplswrpvyLFFQYtqkaqpcfahnsitfNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSewikpneiAYGWLIKGYCDVGDLIEASKIWNLmtdegfepsiDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEiekpdislYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQghlgkrgrkgpdplvnfdtIFVGGLVKAGKSLDAAKYVERVMnrgvevprfdynkflhyysnEEGVVMFEEVGKKLREVGLADLADIFQRYGKKMATRERRRNRAIEP
Flexible Loop (DISEMBL)
apvdpghlvRVCTILYQQQYSPESRLHSSLSSCNFNLTHEFFLQICNNFPLSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEmgrrrlvndkTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVeeiekpdislyhgLIKGLLRLRRAREATQVFREmikrgceptMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVmnrgvevprfdYNKFLHYYSNEEGVVMFEEVGKKLREVGLADLADIFqrygkkmatrerrrnraiep
Low Complexity Region (SEG)
APVDPGHLVRVCTILYQQQYspesrlhsslssCNFNLTHEFFLQICNNFPLSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEKPDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNEEGVVMFEEVGKKLREVGLADLADIFQRYGKKMATRERRRNRAIEP
Disordered region (IsUnstruct)
******HLVRVCTILYQQQYSPE*RLHSSLSSCNFNLTHEFFLQICNNFPLSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEKPDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNEEGVVMFEEVGKKLREVGLADLADIFQRYG****************
Disordered Region (DISOPRED)
APVDPGHLVRVCTILYQQQYSPESRLHSSLSSCNFNLTHEFFLQICNNFPLSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEKPDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNEEGVVMFEEVGKKLREVGLADLADIFQRYGKKMATRERRRNRAIEP
Disordered Region (DISEMBL)
APVDPGHLVRVCTILYQQQYSPESRLHSSLSSCNFNLTHEFFLQICNNFPLSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEKPDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNEEGVVMFEEVGKKLREVGLADLADIFQRYGKKM*************
Disordered Region (DISPRO)
*PVDPGHLVRVCTILYQQQYSPESRLHSSLSSCNFNLTHEFFLQICNNFPLSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEKPDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNEEGVVMFEEVGKKLREVGLADLADIFQRYGKKMATRERRRNR*I**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
APVDPGHLVRVCTILYQQQYSPESRLHSSLSSCNFNLTHEFFLQICNNFPLSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEKPDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNEEGVVMFEEVGKKLREVGLADLADIFQRYGKKMATRERRRNRAIEP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	465	2.2.26 [Sep-21-2011]
Q9FZD4	505	Putative pentatricopeptid	yes	no	0.972	0.895	0.650	1e-180
Q9LZP3	599	Pentatricopeptide repeat-	no	no	0.987	0.766	0.289	6e-62
Q9LEQ7	598	Pentatricopeptide repeat-	no	no	0.987	0.767	0.287	4e-61
Q3EAF8	599	Pentatricopeptide repeat-	no	no	0.987	0.766	0.287	9e-61
Q9LUJ4	562	Pentatricopeptide repeat-	no	no	0.855	0.708	0.262	3e-30
Q9FVX2	517	Pentatricopeptide repeat-	no	no	0.855	0.769	0.220	1e-27
Q9LIL5	523	Putative pentatricopeptid	no	no	0.855	0.760	0.242	2e-27
Q9S7R4	482	Pentatricopeptide repeat-	no	no	0.806	0.778	0.24	3e-26
Q9LFF1	754	Pentatricopeptide repeat-	no	no	0.731	0.450	0.252	2e-25
Q9C9A2	510	Pentatricopeptide repeat-	no	no	0.836	0.762	0.217	3e-25

>sp|Q9FZD4|PPR59_ARATH Putative pentatricopeptide repeat-containing protein At1g26500 OS=Arabidopsis thaliana GN=At1g26500 PE=3 SV=1

 Score =  630 bits (1624), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 294/452 (65%), Positives = 364/452 (80%)

Query: 1   APVDPGHLVRVCTILYQQQYSPESRLHSSLSSCNFNLTHEFFLQICNNFPLSWRPVYLFF 60
            P++  HL+RVCTILYQQQ SP+SRL S LSS  F LTHEFFLQ+CNNFPLSWRPV+ FF
Sbjct: 39  TPINQDHLLRVCTILYQQQNSPDSRLVSKLSSTKFQLTHEFFLQVCNNFPLSWRPVHRFF 98

Query: 61  QYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAE 120
            Y+Q   P F H S T N+M+ IIG SRN+DLFWE  QE+G+R LVNDKTF+I L TLA 
Sbjct: 99  LYSQTHHPDFTHTSTTSNKMLAIIGNSRNMDLFWELAQEIGKRGLVNDKTFRIVLKTLAS 158

Query: 121 VRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAY 180
            RELKK VN+FH+MN  G  Y++E +N+ V+TLC+ KLV EAK++ +KL E+IKP+EI Y
Sbjct: 159 ARELKKCVNYFHLMNGFGYLYNVETMNRGVETLCKEKLVEEAKFVFIKLKEFIKPDEITY 218

Query: 181 GWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRV 240
             +I+G+CDVGDLIEA+K+WNLM DEGF+  I+   K++ET  K N+ DEA KVF +M  
Sbjct: 219 RTMIQGFCDVGDLIEAAKLWNLMMDEGFDVDIEAGKKIMETLLKKNQFDEASKVFYVMVS 278

Query: 241 KRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLR 300
           KR  DL    YR++IDW+CK G+I  A  + +EM +RG+  DNLT +S+IYGLL + R+ 
Sbjct: 279 KRGGDLDGGFYRVMIDWLCKNGRIDMARKVFDEMRERGVYVDNLTWASLIYGLLVKRRVV 338

Query: 301 EAYKVVEEIEKPDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHL 360
           EAY +VE +E PDIS+YHGLIKGL++++RA EAT+VFR+MI+RGCEP MHTY+MLLQGHL
Sbjct: 339 EAYGLVEGVENPDISIYHGLIKGLVKIKRASEATEVFRKMIQRGCEPIMHTYLMLLQGHL 398

Query: 361 GKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNE 420
           G+RGRKGPDPLVNFDTIFVGG++KAGK L+  KY+ER + RG+EVPRFDY+KFLHYYSNE
Sbjct: 399 GRRGRKGPDPLVNFDTIFVGGMIKAGKRLETTKYIERTLKRGLEVPRFDYSKFLHYYSNE 458

Query: 421 EGVVMFEEVGKKLREVGLADLADIFQRYGKKM 452
           EGVVMFEE+ KKLREV L DLADIFQRYG+KM
Sbjct: 459 EGVVMFEEMAKKLREVSLFDLADIFQRYGEKM 490

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LZP3|PP293_ARATH Pentatricopeptide repeat-containing protein At3g62470, mitochondrial OS=Arabidopsis thaliana GN=At3g62470 PE=2 SV=1

 Score =  238 bits (608), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 139/480 (28%), Positives = 257/480 (53%), Gaps = 21/480 (4%)

Query: 1   APVDPGHLVRVCTILYQQQYSPESRLHSSLSSCNFNLTHEFFLQICNNFPLSWRPVYLFF 60
           +  +P  + RVC ++  + ++ +  + + L     +L+H+  +++   F  + +P + FF
Sbjct: 124 SSTNPEEVERVCKVI-DELFALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRFF 182

Query: 61  QYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAE 120
            +  + Q  FAH+S T+N M+ I+ K+R  +     L+EMG + L+  +TF IA+   A 
Sbjct: 183 CWAAERQG-FAHDSRTYNSMMSILAKTRQFETMVSVLEEMGTKGLLTMETFTIAMKAFAA 241

Query: 121 VRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAY 180
            +E KK V  F +M     +  +E +N ++ +L + KL  EA+ L  KL E   PN + Y
Sbjct: 242 AKERKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTY 301

Query: 181 GWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRV 240
             L+ G+C V +LIEA++IWN M D+G +P I   + M+E   +  K  +A+K+F +M+ 
Sbjct: 302 TVLLNGWCRVRNLIEAARIWNDMIDQGLKPDIVAHNVMLEGLLRSRKKSDAIKLFHVMKS 361

Query: 241 KRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLR 300
           K      + +Y I+I   CK+  +  A    ++M   G++ D    + +I G   + +L 
Sbjct: 362 KG-PCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLD 420

Query: 301 EAYKVVEEIEK----PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLL 356
             Y++++E+++    PD   Y+ LIK +   +    AT+++ +MI+   EP++HT+ M++
Sbjct: 421 TVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHATRIYNKMIQNEIEPSIHTFNMIM 480

Query: 357 QGHLGKRG------------RKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVE 404
           + +   R             +KG  P  N  T+ + GL+  GKS +A +Y+E ++++G++
Sbjct: 481 KSYFMARNYEMGRAVWEEMIKKGICPDDNSYTVLIRGLIGEGKSREACRYLEEMLDKGMK 540

Query: 405 VPRFDYNKFLHYYSNEEGVVMFEEVGKKLREVGLADLADIFQRYGKKMATRERRRNRAIE 464
            P  DYNKF   +       +FEE+ ++ +  G    A+IF R+ +   TR R + R +E
Sbjct: 541 TPLIDYNKFAADFHRGGQPEIFEELAQRAKFSGKFAAAEIFARWAQ--MTRRRFKQRFME 598

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LEQ7|PP382_ARATH Pentatricopeptide repeat-containing protein At5g14820, mitochondrial OS=Arabidopsis thaliana GN=At5g14820 PE=2 SV=1

 Score =  236 bits (601), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 138/480 (28%), Positives = 255/480 (53%), Gaps = 21/480 (4%)

Query: 1   APVDPGHLVRVCTILYQQQYSPESRLHSSLSSCNFNLTHEFFLQICNNFPLSWRPVYLFF 60
           +  +P  + RVC ++  + ++ +  + + L     +L+H+  +++   F  + +P + FF
Sbjct: 123 SSTNPEEVERVCKVI-DELFALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRFF 181

Query: 61  QYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAE 120
            +  + Q  FAH+S T+N M+ I+ K+R  +     L+EMG + L+  +TF IA+   A 
Sbjct: 182 CWAAERQG-FAHDSRTYNSMMSILAKTRQFETMVSVLEEMGTKGLLTMETFTIAMKAFAA 240

Query: 121 VRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAY 180
            +E KK V  F +M     +  +E +N ++ +L + KL  EA+ L  KL E   PN + Y
Sbjct: 241 AKERKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTY 300

Query: 181 GWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRV 240
             L+ G+C V +LIEA++IWN M D G +P I   + M+E   +  K  +A+K+F +M+ 
Sbjct: 301 TVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKS 360

Query: 241 KRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLR 300
           K      + +Y I+I   CK+  +  A    ++M   G++ D    + +I G   + +L 
Sbjct: 361 KG-PCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLD 419

Query: 301 EAYKVVEEIEK----PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLL 356
             Y++++E+++    PD   Y+ LIK +   +     T+++ +MI+   EP++HT+ M++
Sbjct: 420 TVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIM 479

Query: 357 QGHLGKRG------------RKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVE 404
           + +   R             +KG  P  N  T+ + GL+  GKS +A +Y+E ++++G++
Sbjct: 480 KSYFVARNYEMGRAVWDEMIKKGICPDDNSYTVLIRGLISEGKSREACRYLEEMLDKGMK 539

Query: 405 VPRFDYNKFLHYYSNEEGVVMFEEVGKKLREVGLADLADIFQRYGKKMATRERRRNRAIE 464
            P  DYNKF   +       +FEE+ ++ +  G    A+IF R+ +   TR R + R +E
Sbjct: 540 TPLIDYNKFAADFHRGGQPEIFEELAQRAKFSGKFAAAEIFARWAQ--MTRRRCKQRFME 597

Arabidopsis thaliana (taxid: 3702)

>sp|Q3EAF8|PP294_ARATH Pentatricopeptide repeat-containing protein At3g62540, mitochondrial OS=Arabidopsis thaliana GN=At3g62540 PE=2 SV=1

 Score =  234 bits (598), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 138/480 (28%), Positives = 254/480 (52%), Gaps = 21/480 (4%)

Query: 1   APVDPGHLVRVCTILYQQQYSPESRLHSSLSSCNFNLTHEFFLQICNNFPLSWRPVYLFF 60
           +  +P  + RVC ++  + ++ +  + + L     +L+H+  +++   F  + +P + FF
Sbjct: 124 SSTNPEEVERVCKVI-DELFALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRFF 182

Query: 61  QYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAE 120
            +  + Q  FAH S T+N M+ I+ K+R  +     L+EMG + L+  +TF IA+   A 
Sbjct: 183 CWAAERQG-FAHASRTYNSMMSILAKTRQFETMVSVLEEMGTKGLLTMETFTIAMKAFAA 241

Query: 121 VRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAY 180
            +E KK V  F +M     +  +E +N ++ +L + KL  EA+ L  KL E   PN + Y
Sbjct: 242 AKERKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTY 301

Query: 181 GWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRV 240
             L+ G+C V +LIEA++IWN M D G +P I   + M+E   +  K  +A+K+F +M+ 
Sbjct: 302 TVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKS 361

Query: 241 KRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLR 300
           K      + +Y I+I   CK+  +  A    ++M   G++ D    + +I G   + +L 
Sbjct: 362 KG-PCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLD 420

Query: 301 EAYKVVEEIEK----PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLL 356
             Y++++E+++    PD   Y+ LIK +   +     T+++ +MI+   EP++HT+ M++
Sbjct: 421 TVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIM 480

Query: 357 QGHLGKRG------------RKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVE 404
           + +   R             +KG  P  N  T+ + GL+  GKS +A +Y+E ++++G++
Sbjct: 481 KSYFVARNYEMGRAVWDEMIKKGICPDDNSYTVLIRGLISEGKSREACRYLEEMLDKGMK 540

Query: 405 VPRFDYNKFLHYYSNEEGVVMFEEVGKKLREVGLADLADIFQRYGKKMATRERRRNRAIE 464
            P  DYNKF   +       +FEE+ ++ +  G    A+IF R+ +   TR R + R +E
Sbjct: 541 TPLIDYNKFAADFHRGGQPEIFEELAQRAKFSGKFAAAEIFARWAQ--MTRRRCKQRFME 598

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LUJ4|PP248_ARATH Pentatricopeptide repeat-containing protein At3g22670, mitochondrial OS=Arabidopsis thaliana GN=At3g22670 PE=2 SV=1

 Score =  133 bits (334), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 113/431 (26%), Positives = 197/431 (45%), Gaps = 33/431 (7%)

Query: 10  RVCTILYQQQYSPESRLHSSLSSCNFNLTHEFFLQICNNFPLSWRPVYLFFQYTQKAQPC 69
           +VC  L ++  S E  +   LS C+  +T    LQ+   F   W   Y FF +   +Q  
Sbjct: 104 KVCDFLNKKDTSHEDVV-KELSKCDVVVTESLVLQVLRRFSNGWNQAYGFFIWAN-SQTG 161

Query: 70  FAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRR---RLVNDKTFKIALMTLAEVRELKK 126
           + H+  T+N MVD++GK RN DL WE + EM +    +LV   T    +  LA+  +  K
Sbjct: 162 YVHSGHTYNAMVDVLGKCRNFDLMWELVNEMNKNEESKLVTLDTMSKVMRRLAKSGKYNK 221

Query: 127 MVN-FFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIK 185
            V+ F  +    G +     +N ++  L +   +  A  + LKL + IKP+   +  LI 
Sbjct: 222 AVDAFLEMEKSYGVKTDTIAMNSLMDALVKENSIEHAHEVFLKLFDTIKPDARTFNILIH 281

Query: 186 GYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMD- 244
           G+C      +A  + +LM    F P +      +E +    K+ +  +V +M+   R + 
Sbjct: 282 GFCKARKFDDARAMMDLMKVTEFTPDVVTYTSFVEAYC---KEGDFRRVNEMLEEMRENG 338

Query: 245 -DLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAY 303
            +  + TY IV+  + K  ++++A  + E+M + G   D    SS+I+ L   GR ++A 
Sbjct: 339 CNPNVVTYTIVMHSLGKSKQVAEALGVYEKMKEDGCVPDAKFYSSLIHILSKTGRFKDAA 398

Query: 304 KVVEEIE----KPDISLYHGLIKGLLRLRRAREATQVFREMIK---RGCEPTMHTYIMLL 356
           ++ E++     + D+ +Y+ +I   L   R   A ++ + M       C P + TY  LL
Sbjct: 399 EIFEDMTNQGVRRDVLVYNTMISAALHHSRDEMALRLLKRMEDEEGESCSPNVETYAPLL 458

Query: 357 Q-----------GHLGKRGRKGPDPLVNFDT--IFVGGLVKAGKSLDAAKYVERVMNRGV 403
           +           G L     K  D  ++  T  + + GL  +GK  +A  + E  + +G+
Sbjct: 459 KMCCHKKKMKLLGILLHHMVKN-DVSIDVSTYILLIRGLCMSGKVEEACLFFEEAVRKGM 517

Query: 404 EVPRFDYNKFL 414
            VPR    K L
Sbjct: 518 -VPRDSTCKML 527

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FVX2|PP129_ARATH Pentatricopeptide repeat-containing protein At1g77360, mitochondrial OS=Arabidopsis thaliana GN=At1g77360 PE=2 SV=2

 Score =  124 bits (311), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 92/417 (22%), Positives = 190/417 (45%), Gaps = 19/417 (4%)

Query: 21  SPESRLHSSLSSCNFNLTHEFFLQICNNFPLSWRPVYLFFQYTQKAQPCFAHNSITFNRM 80
           SP+  L S+L      ++ E    + N F  +    Y FFQ+++K Q  + H+   ++ M
Sbjct: 82  SPQLVLDSALDQSGLRVSQEVVEDVLNRFRNAGLLTYRFFQWSEK-QRHYEHSVRAYHMM 140

Query: 81  VDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCE 140
           ++   K R   L W+ +  M +++++N +TF I +   A  +++ + +  F++M      
Sbjct: 141 IESTAKIRQYKLMWDLINAMRKKKMLNVETFCIVMRKYARAQKVDEAIYAFNVMEKYDLP 200

Query: 141 YSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIW 200
            +L   N ++  LC+ K V +A+ +   + +   P+   Y  L++G+    +L +A +++
Sbjct: 201 PNLVAFNGLLSALCKSKNVRKAQEVFENMRDRFTPDSKTYSILLEGWGKEPNLPKAREVF 260

Query: 201 NLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCK 260
             M D G  P I     M++   K  + DEA+ + + M            Y +++     
Sbjct: 261 REMIDAGCHPDIVTYSIMVDILCKAGRVDEALGIVRSMDPSICKPTTF-IYSVLVHTYGT 319

Query: 261 RGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK----PDISL 316
             ++ +A     EM + G++AD    +S+I       R++  Y+V++E++     P+   
Sbjct: 320 ENRLEEAVDTFLEMERSGMKADVAVFNSLIGAFCKANRMKNVYRVLKEMKSKGVTPNSKS 379

Query: 317 YHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRG------------ 364
            + +++ L+      EA  VFR+MIK  CEP   TY M+++    K+             
Sbjct: 380 CNIILRHLIERGEKDEAFDVFRKMIK-VCEPDADTYTMVIKMFCEKKEMETADKVWKYMR 438

Query: 365 RKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNEE 421
           +KG  P ++  ++ + GL +   +  A   +E ++  G+      + +       EE
Sbjct: 439 KKGVFPSMHTFSVLINGLCEERTTQKACVLLEEMIEMGIRPSGVTFGRLRQLLIKEE 495

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LIL5|PP233_ARATH Putative pentatricopeptide repeat-containing protein At3g15200 OS=Arabidopsis thaliana GN=At3g15200 PE=3 SV=1

 Score =  123 bits (309), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 103/425 (24%), Positives = 193/425 (45%), Gaps = 27/425 (6%)

Query: 4   DPGHLVRVCTILYQQQYSPESRLHSSLSSCNFNLTHEFFLQICNNFPLSWRPVYLFFQYT 63
           D    + V  I+   + S   ++   L  C  +LT E  L++ N     W+P Y+  Q  
Sbjct: 74  DKQSALDVHNIIKHHRGSSPEKIKRILDKCGIDLTEELVLEVVNRNRSDWKPAYILSQLV 133

Query: 64  QKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRR-LVNDKTFKIALMTLAEVR 122
            K Q     +S+ +N ++D++GK R  + F +   EM +R   VN+KT+++ L   A   
Sbjct: 134 VK-QSVHLSSSMLYNEILDVLGKMRRFEEFHQVFDEMSKRDGFVNEKTYEVLLNRYAAAH 192

Query: 123 ELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGW 182
           ++ + V  F    + G +  L   + ++  LC+ K V  A+ L          +  A   
Sbjct: 193 KVDEAVGVFERRKEFGIDDDLVAFHGLLMWLCRYKHVEFAETLFCSRRREFGCDIKAMNM 252

Query: 183 LIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMM-RVK 241
           ++ G+C +G++ EA + W  +      P +     MI    K  K  +AM++++ M   +
Sbjct: 253 ILNGWCVLGNVHEAKRFWKDIIASKCRPDVVSYGTMINALTKKGKLGKAMELYRAMWDTR 312

Query: 242 RMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLRE 301
           R  D+ +     VID +C + +I +A  +  E+ ++G + + +T +S++  L    R  +
Sbjct: 313 RNPDVKICNN--VIDALCFKKRIPEALEVFREISEKGPDPNVVTYNSLLKHLCKIRRTEK 370

Query: 302 AYKVVEEIE------KPDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIML 355
            +++VEE+E       P+   +  L+K     +R+++   V   M K  CE T   Y ++
Sbjct: 371 VWELVEEMELKGGSCSPNDVTFSYLLK---YSQRSKDVDIVLERMAKNKCEMTSDLYNLM 427

Query: 356 LQGHL------------GKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRG- 402
            + ++             +  R G  P     TI + GL   GK  +A  Y + +M++G 
Sbjct: 428 FRLYVQWDKEEKVREIWSEMERSGLGPDQRTYTIRIHGLHTKGKIGEALSYFQEMMSKGM 487

Query: 403 VEVPR 407
           V  PR
Sbjct: 488 VPEPR 492

Arabidopsis thaliana (taxid: 3702)

>sp|Q9S7R4|PP125_ARATH Pentatricopeptide repeat-containing protein At1g74900, mitochondrial OS=Arabidopsis thaliana GN=OTP43 PE=2 SV=1

 Score =  120 bits (300), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 96/400 (24%), Positives = 180/400 (45%), Gaps = 25/400 (6%)

Query: 36  NLTHEFFLQICNNFPLSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWE 95
           NL +    ++ N+ P + +    FF +       + H++ +F+  +DI  +       W 
Sbjct: 57  NLVNSVLKRLWNHGPKALQ----FFHFLDNHHREYVHDASSFDLAIDIAARLHLHPTVWS 112

Query: 96  TLQEMGRRRL-VNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLC 154
            +  M   R+  + KTF I     A   +  K V  F  M++ GC   L   N ++  LC
Sbjct: 113 LIHRMRSLRIGPSPKTFAIVAERYASAGKPDKAVKLFLNMHEHGCFQDLASFNTILDVLC 172

Query: 155 QRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDV 214
           + K V +A  L   L      + + Y  ++ G+C +    +A ++   M + G  P++  
Sbjct: 173 KSKRVEKAYELFRALRGRFSVDTVTYNVILNGWCLIKRTPKALEVLKEMVERGINPNLTT 232

Query: 215 VDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEM 274
            + M++ FF+  +   A + F  M+ KR  ++ + TY  V+      G+I +A  + +EM
Sbjct: 233 YNTMLKGFFRAGQIRHAWEFFLEMK-KRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEM 291

Query: 275 FKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK----PDISLYHGLIKGLLRLRRA 330
            + G+     T +++I  L  +  +  A  + EE+ +    P+++ Y+ LI+GL      
Sbjct: 292 IREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEF 351

Query: 331 REATQVFREMIKRGCEPTMHTYIMLLQGH---------LGKRGRKGP-DPLVNFDT--IF 378
               ++ + M   GCEP   TY M+++ +         LG   + G  D L N DT  I 
Sbjct: 352 SRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGSGDCLPNLDTYNIL 411

Query: 379 VGGLVKAGKSLD---AAKYVERVMNRGVEVPRFDYNKFLH 415
           + G+    +S D   A K +  ++ RG    +F +N+ L+
Sbjct: 412 ISGMFVRKRSEDMVVAGKLLLEMVERGFIPRKFTFNRVLN 451

Required for the trans-splicing of intron 1 of the mitochondrial nad1 transcript encoding the ND1 subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I).

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1

 Score =  117 bits (293), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/364 (25%), Positives = 169/364 (46%), Gaps = 24/364 (6%)

Query: 73  NSITFNRMVDIIGKSRNIDLFWETLQEMGRRR--LVNDKTFKIALMTLAEVRELKKMVNF 130
           ++++ N +V    K   ++     +QEM  +     +  TF   +  L +   +K  +  
Sbjct: 258 SNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEI 317

Query: 131 FHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEA-KYLILKLSEWIKPNEIAYGWLIKGYCD 189
             +M   G +  +   N V+  LC+   V EA + L   ++    PN + Y  LI   C 
Sbjct: 318 MDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCK 377

Query: 190 VGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLS 249
              + EA+++  ++T +G  P +   + +I+          AM++F+ MR K  +     
Sbjct: 378 ENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEF- 436

Query: 250 TYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEI 309
           TY ++ID +C +GK+ +A  ML++M   G     +T +++I G     + REA ++ +E+
Sbjct: 437 TYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEM 496

Query: 310 EKPDIS----LYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRG- 364
           E   +S     Y+ LI GL + RR  +A Q+  +MI  G +P  +TY  LL  H  + G 
Sbjct: 497 EVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLT-HFCRGGD 555

Query: 365 ------------RKGPDP-LVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYN 411
                         G +P +V + T+ + GL KAG+   A+K +  +  +G+ +    YN
Sbjct: 556 IKKAADIVQAMTSNGCEPDIVTYGTL-ISGLCKAGRVEVASKLLRSIQMKGINLTPHAYN 614

Query: 412 KFLH 415
             + 
Sbjct: 615 PVIQ 618

May be involved in female gametophyte development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C9A2|PP112_ARATH Pentatricopeptide repeat-containing protein At1g71060, mitochondrial OS=Arabidopsis thaliana GN=At1g71060 PE=2 SV=1

 Score =  117 bits (292), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 90/414 (21%), Positives = 193/414 (46%), Gaps = 25/414 (6%)

Query: 10  RVCTILYQQQYSPESRLHSSLSSCNFNLTHEFFLQICNNFPLSWRPVYLFFQYTQKAQPC 69
           R+C IL +     +S++ + L+  +  L+     ++      +       F++ +  Q  
Sbjct: 68  RICKILTK---FTDSKVETLLNEASVKLSPALIEEVLKKLSNAGVLALSVFKWAEN-QKG 123

Query: 70  FAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVN 129
           F H +  +N +++ +GK +   L W  + +M  ++L++ +TF +     A  R++K+ + 
Sbjct: 124 FKHTTSNYNALIESLGKIKQFKLIWSLVDDMKAKKLLSKETFALISRRYARARKVKEAIG 183

Query: 130 FFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKL-SEWIKPNEIAYGWLIKGYC 188
            FH M + G +      N+++ TL + + V +A+ +  K+  +  +P+  +Y  L++G+ 
Sbjct: 184 AFHKMEEFGFKMESSDFNRMLDTLSKSRNVGDAQKVFDKMKKKRFEPDIKSYTILLEGWG 243

Query: 189 DVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGL 248
              +L+   ++   M DEGFEP +     +I    K  K +EA++ F  M  +R      
Sbjct: 244 QELNLLRVDEVNREMKDEGFEPDVVAYGIIINAHCKAKKYEEAIRFFNEME-QRNCKPSP 302

Query: 249 STYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEE 308
             +  +I+ +    K++ A    E     G   +  T ++++       R+ +AYK V+E
Sbjct: 303 HIFCSLINGLGSEKKLNDALEFFERSKSSGFPLEAPTYNALVGAYCWSQRMEDAYKTVDE 362

Query: 309 IE----KPDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKR- 363
           +      P+   Y  ++  L+R++R++EA +V++ M    CEPT+ TY ++++    K  
Sbjct: 363 MRLKGVGPNARTYDIILHHLIRMQRSKEAYEVYQTM---SCEPTVSTYEIMVRMFCNKER 419

Query: 364 -----------GRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVP 406
                        KG  P ++  +  +  L    K  +A +Y   +++ G+  P
Sbjct: 420 LDMAIKIWDEMKGKGVLPGMHMFSSLITALCHENKLDEACEYFNEMLDVGIRPP 473

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	465
225423476	525	PREDICTED: putative pentatricopeptide re	0.993	0.88	0.725	0.0
297738085	523	unnamed protein product [Vitis vinifera]	0.993	0.883	0.725	0.0
449453031	505	PREDICTED: putative pentatricopeptide re	0.991	0.912	0.686	0.0
224138618	502	predicted protein [Populus trichocarpa]	0.974	0.902	0.697	0.0
357487519	507	hypothetical protein MTR_5g044120 [Medic	0.991	0.909	0.670	0.0
356497975	494	PREDICTED: putative pentatricopeptide re	0.991	0.933	0.668	0.0
15222719	505	pentatricopeptide repeat-containing prot	0.972	0.895	0.650	1e-178
297851040	500	pentatricopeptide repeat-containing prot	0.972	0.904	0.650	1e-177
326491941	513	predicted protein [Hordeum vulgare subsp	0.972	0.881	0.473	1e-117
357116472	1433	PREDICTED: disease resistance protein RP	0.982	0.318	0.480	1e-116

>gi|225423476|ref|XP_002274259.1| PREDICTED: putative pentatricopeptide repeat-containing protein At1g26500-like [Vitis vinifera]

 Score =  728 bits (1880), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/463 (72%), Positives = 396/463 (85%), Gaps = 1/463 (0%)

Query: 3   VDPGHLVRVCTILYQQQYSPESRLHSSLSSCNFNLTHEFFLQICNNFPLSWRPVYLFFQY 62
           V+P HL+RVCT+LYQQQ SPE RL + L +C F+LTHEFFLQ+CN FPLSWRPVY FF++
Sbjct: 36  VNPNHLLRVCTVLYQQQNSPEVRLQTHLRACEFHLTHEFFLQVCNKFPLSWRPVYKFFEF 95

Query: 63  TQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVR 122
           T+  QPCF HNS+TFN+MVD+IG+SRNI LFWE LQEMGRRRL NDKTF IAL TLA +R
Sbjct: 96  TE-TQPCFHHNSVTFNKMVDVIGRSRNIKLFWEVLQEMGRRRLANDKTFVIALKTLASIR 154

Query: 123 ELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGW 182
           E+KK V FFH+MN     YSLE LNKVV+ LC+ KL VEAK ++LKL  WI P+ + YG+
Sbjct: 155 EMKKCVEFFHLMNAHEYGYSLETLNKVVEVLCRSKLAVEAKEIVLKLKTWIPPSGVTYGY 214

Query: 183 LIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKR 242
           LIKG+C+VGDLIEA+ +W+LM DEGF P ID V+KM+ET F IN+ DEAMK+FQ +R  R
Sbjct: 215 LIKGFCEVGDLIEAANVWDLMVDEGFRPGIDAVEKMMETLFNINRFDEAMKLFQAVRTTR 274

Query: 243 MDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREA 302
            D+L LSTY +VIDWMCKRGK+SQAY + EEM KRGI+ DN T+SS+IYGLLA+GR+REA
Sbjct: 275 FDELVLSTYSLVIDWMCKRGKVSQAYMVFEEMLKRGIQPDNKTMSSLIYGLLAKGRVREA 334

Query: 303 YKVVEEIEKPDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGK 362
            K+ E IE+PDI++YHG+IKGLLRLR+A EATQVFREMI+RGCEPTMHTYIMLLQGHLGK
Sbjct: 335 NKITEGIERPDIAVYHGVIKGLLRLRKAGEATQVFREMIRRGCEPTMHTYIMLLQGHLGK 394

Query: 363 RGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNEEG 422
           +GRKGP PLVNFD+IFVGGL+K GKSLDA+KYVER+M+ G+EVPRFDYN+FLH YSNEEG
Sbjct: 395 KGRKGPHPLVNFDSIFVGGLIKVGKSLDASKYVERMMDGGMEVPRFDYNRFLHCYSNEEG 454

Query: 423 VVMFEEVGKKLREVGLADLADIFQRYGKKMATRERRRNRAIEP 465
           V MFEEVGKKLREVGL DLADIF RYG+KMATR+RRRNR  EP
Sbjct: 455 VFMFEEVGKKLREVGLVDLADIFLRYGEKMATRDRRRNRVAEP 497

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738085|emb|CBI27286.3| unnamed protein product [Vitis vinifera]

 Score =  728 bits (1879), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/463 (72%), Positives = 396/463 (85%), Gaps = 1/463 (0%)

Query: 3   VDPGHLVRVCTILYQQQYSPESRLHSSLSSCNFNLTHEFFLQICNNFPLSWRPVYLFFQY 62
           V+P HL+RVCT+LYQQQ SPE RL + L +C F+LTHEFFLQ+CN FPLSWRPVY FF++
Sbjct: 34  VNPNHLLRVCTVLYQQQNSPEVRLQTHLRACEFHLTHEFFLQVCNKFPLSWRPVYKFFEF 93

Query: 63  TQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVR 122
           T+  QPCF HNS+TFN+MVD+IG+SRNI LFWE LQEMGRRRL NDKTF IAL TLA +R
Sbjct: 94  TE-TQPCFHHNSVTFNKMVDVIGRSRNIKLFWEVLQEMGRRRLANDKTFVIALKTLASIR 152

Query: 123 ELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGW 182
           E+KK V FFH+MN     YSLE LNKVV+ LC+ KL VEAK ++LKL  WI P+ + YG+
Sbjct: 153 EMKKCVEFFHLMNAHEYGYSLETLNKVVEVLCRSKLAVEAKEIVLKLKTWIPPSGVTYGY 212

Query: 183 LIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKR 242
           LIKG+C+VGDLIEA+ +W+LM DEGF P ID V+KM+ET F IN+ DEAMK+FQ +R  R
Sbjct: 213 LIKGFCEVGDLIEAANVWDLMVDEGFRPGIDAVEKMMETLFNINRFDEAMKLFQAVRTTR 272

Query: 243 MDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREA 302
            D+L LSTY +VIDWMCKRGK+SQAY + EEM KRGI+ DN T+SS+IYGLLA+GR+REA
Sbjct: 273 FDELVLSTYSLVIDWMCKRGKVSQAYMVFEEMLKRGIQPDNKTMSSLIYGLLAKGRVREA 332

Query: 303 YKVVEEIEKPDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGK 362
            K+ E IE+PDI++YHG+IKGLLRLR+A EATQVFREMI+RGCEPTMHTYIMLLQGHLGK
Sbjct: 333 NKITEGIERPDIAVYHGVIKGLLRLRKAGEATQVFREMIRRGCEPTMHTYIMLLQGHLGK 392

Query: 363 RGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNEEG 422
           +GRKGP PLVNFD+IFVGGL+K GKSLDA+KYVER+M+ G+EVPRFDYN+FLH YSNEEG
Sbjct: 393 KGRKGPHPLVNFDSIFVGGLIKVGKSLDASKYVERMMDGGMEVPRFDYNRFLHCYSNEEG 452

Query: 423 VVMFEEVGKKLREVGLADLADIFQRYGKKMATRERRRNRAIEP 465
           V MFEEVGKKLREVGL DLADIF RYG+KMATR+RRRNR  EP
Sbjct: 453 VFMFEEVGKKLREVGLVDLADIFLRYGEKMATRDRRRNRVAEP 495

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453031|ref|XP_004144262.1| PREDICTED: putative pentatricopeptide repeat-containing protein At1g26500-like [Cucumis sativus]

 Score =  687 bits (1772), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/462 (68%), Positives = 381/462 (82%), Gaps = 1/462 (0%)

Query: 2   PVDPGHLVRVCTILYQQQYSPESRLHSSLSSCNFNLTHEFFLQICNNFPLSWRPVYLFFQ 61
           P+D  HL RVCT+LYQQQ SP+ +LH+ L +CNFNL+HEFFLQ+CN FPLSWRPVY FFQ
Sbjct: 41  PIDSTHLRRVCTVLYQQQNSPDLKLHTKLLACNFNLSHEFFLQVCNTFPLSWRPVYRFFQ 100

Query: 62  YTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEV 121
           +T+   P F H +++FN+++D++GKSRNIDL W  +QEMGRRRLVNDKTF +AL TLA  
Sbjct: 101 FTE-THPNFTHTAVSFNKLIDVVGKSRNIDLLWGLIQEMGRRRLVNDKTFVVALRTLATA 159

Query: 122 RELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYG 181
           RELKK V FFH+MN  G  YSL  LN+VV+ LC  KLV EAK+L++KL+EWIK + + Y 
Sbjct: 160 RELKKCVEFFHLMNGYGFCYSLVTLNRVVEKLCGCKLVDEAKFLVMKLNEWIKADGVTYK 219

Query: 182 WLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVK 241
            LIKG+C+VGDLIEASK+WNLM DEGFEP ++ V++M+   FK NK DEA+K+FQ +R  
Sbjct: 220 LLIKGFCNVGDLIEASKMWNLMVDEGFEPEMEAVEEMMNVLFKTNKLDEALKLFQALRSD 279

Query: 242 RMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLRE 301
           RM+DL  STY +VI W+C +GK+ QA+ + +EM KRG+E DN   SS+IYGLLARGR RE
Sbjct: 280 RMNDLIPSTYSLVIRWLCNKGKVGQAFIVFDEMHKRGLEVDNSVHSSLIYGLLARGRRRE 339

Query: 302 AYKVVEEIEKPDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLG 361
           AY ++  IE PD+ +YH  IKGLL+L+RA EATQVFREMI+RGCEP MHTYIMLLQGHLG
Sbjct: 340 AYNIMRRIENPDLDVYHAFIKGLLKLKRANEATQVFREMIERGCEPIMHTYIMLLQGHLG 399

Query: 362 KRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNEE 421
           KRGRKG DPLVNFD+IFVGGLVK GKSL+A KYVER+M RG+EVPRFDYNKFLHYYSNEE
Sbjct: 400 KRGRKGSDPLVNFDSIFVGGLVKNGKSLEATKYVERLMKRGLEVPRFDYNKFLHYYSNEE 459

Query: 422 GVVMFEEVGKKLREVGLADLADIFQRYGKKMATRERRRNRAI 463
           GVVMF EVG KLREVGL DLADIFQRYG+KM TR+RRRNRA+
Sbjct: 460 GVVMFREVGNKLREVGLVDLADIFQRYGEKMTTRDRRRNRAV 501

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138618|ref|XP_002322859.1| predicted protein [Populus trichocarpa] gi|222867489|gb|EEF04620.1| predicted protein [Populus trichocarpa]

 Score =  682 bits (1761), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/456 (69%), Positives = 378/456 (82%), Gaps = 3/456 (0%)

Query: 1   APVDPGHLVRVCTILYQQQYSPESRLHSSLSSCNFNLTHEFFLQICNNFPLSWRPVYLFF 60
           +PV+  HL+RVCT+L+QQQ S + +L + LSS +FNLTHEFFLQ+CN FP SWRPV+ FF
Sbjct: 33  SPVNEDHLLRVCTVLFQQQDSSDFKLRNKLSSIDFNLTHEFFLQVCNKFPASWRPVHRFF 92

Query: 61  QYTQKAQPC--FAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTL 118
           QYTQ+  PC  F H S++ N+M+DI G+SRN+DL W  +QEM +R LVNDKTF I L  L
Sbjct: 93  QYTQQ-MPCSRFTHTSVSLNKMLDIFGRSRNLDLLWGAVQEMAKRGLVNDKTFIIVLKAL 151

Query: 119 AEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEI 178
           A  RELKK   FFH MN+ GCEY +E LNKVV+ LC+ KLV EAK+++LKL +WI+P+ +
Sbjct: 152 ASARELKKCAEFFHFMNEHGCEYRVERLNKVVENLCKGKLVEEAKFVVLKLKDWIRPDGV 211

Query: 179 AYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMM 238
            YGWL+KG+CDVG+LIEASKIWNLM DE  EP I+V +KM+ET FK N+ DEA+KVFQ M
Sbjct: 212 TYGWLVKGFCDVGELIEASKIWNLMVDESIEPEIEVFEKMMETLFKRNEYDEALKVFQTM 271

Query: 239 RVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGR 298
           RV RMDDL LSTYR+VIDWMC++GK+ QA  + +EM +RGI+ADN TL S++YGLL RGR
Sbjct: 272 RVNRMDDLALSTYRLVIDWMCRKGKVVQAQMVFDEMRQRGIQADNSTLGSLVYGLLTRGR 331

Query: 299 LREAYKVVEEIEKPDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQG 358
             EA+KVVE IEK DIS+YHGLIKGL+R RRA EATQVFREMI RGCEPTMHTYIMLLQG
Sbjct: 332 HAEAHKVVERIEKTDISVYHGLIKGLVRSRRASEATQVFREMINRGCEPTMHTYIMLLQG 391

Query: 359 HLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYS 418
           HLGKRGRKGPDPLVNF++IFVGGL+KAGKSL+A KYVER M   +EVPRFDYNKFLHYYS
Sbjct: 392 HLGKRGRKGPDPLVNFESIFVGGLIKAGKSLEATKYVERTMKGSLEVPRFDYNKFLHYYS 451

Query: 419 NEEGVVMFEEVGKKLREVGLADLADIFQRYGKKMAT 454
           +EEGVVMF+EVGKKLRE G  DLADI QRYG+KMAT
Sbjct: 452 SEEGVVMFKEVGKKLREAGFVDLADILQRYGEKMAT 487

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357487519|ref|XP_003614047.1| hypothetical protein MTR_5g044120 [Medicago truncatula] gi|355515382|gb|AES97005.1| hypothetical protein MTR_5g044120 [Medicago truncatula]

 Score =  669 bits (1725), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/462 (67%), Positives = 381/462 (82%), Gaps = 1/462 (0%)

Query: 1   APVDPGHLVRVCTILYQQQYSPESRLHSSLSSCNFNLTHEFFLQICNNFPLSWRPVYLFF 60
            PV+   L++VCTILYQQQ SP+SRLHS L+S NFNLTHEFFLQ+CNNFP SWRPVY FF
Sbjct: 30  TPVNREELLKVCTILYQQQNSPDSRLHSKLTSSNFNLTHEFFLQVCNNFPYSWRPVYRFF 89

Query: 61  QYTQKAQ-PCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLA 119
            +TQ+ +   F H  ++FN+M+D++ KSRNIDLFW  + E  RR LVN+KTF I L TL 
Sbjct: 90  LFTQQEKNSSFTHTHVSFNKMLDVVAKSRNIDLFWSLVNETARRGLVNNKTFVIGLKTLG 149

Query: 120 EVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIA 179
             RELKK V FFH+MN  G  YS+E LNKVV+ +C+ KLV EAK+++ K+ + IK + ++
Sbjct: 150 GARELKKCVEFFHLMNLNGYGYSVERLNKVVEEMCKVKLVEEAKFVVFKMKDLIKLDGVS 209

Query: 180 YGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMR 239
           Y WLI G+C+ GDLIEASKIWNLM DEGF P +DVV+  +ETFFK+N+  E +K+FQ MR
Sbjct: 210 YKWLISGFCEKGDLIEASKIWNLMVDEGFVPDVDVVENFMETFFKVNQFGEGLKLFQTMR 269

Query: 240 VKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRL 299
           +KRMD+LG+STYR+VI W+CK+G +  A+ + +EM +RGI  D+LTL  ++YGLLA+ R+
Sbjct: 270 LKRMDELGVSTYRVVIKWLCKKGMMDNAHEVFDEMCERGIRVDSLTLGYVVYGLLAKHRV 329

Query: 300 REAYKVVEEIEKPDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGH 359
           REAY++VE+I+  DIS+YHGLIKGLL+LRRA EATQVFREMIKRGCEPTMHTYIMLLQGH
Sbjct: 330 REAYQIVEKIDVVDISVYHGLIKGLLKLRRASEATQVFREMIKRGCEPTMHTYIMLLQGH 389

Query: 360 LGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSN 419
           LG+RGRKG DPLVNFD+IFVGG+VK G S +A KYVERVMNRG+EVPRFDYNKFLHY+SN
Sbjct: 390 LGRRGRKGTDPLVNFDSIFVGGMVKVGHSKEAIKYVERVMNRGMEVPRFDYNKFLHYFSN 449

Query: 420 EEGVVMFEEVGKKLREVGLADLADIFQRYGKKMATRERRRNR 461
           EEG VMFEEV KKLREVGL DLADI +RYG+KM+TR+RRRNR
Sbjct: 450 EEGAVMFEEVAKKLREVGLVDLADILERYGQKMSTRDRRRNR 491

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497975|ref|XP_003517831.1| PREDICTED: putative pentatricopeptide repeat-containing protein At1g26500-like [Glycine max]

 Score =  668 bits (1723), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 309/462 (66%), Positives = 381/462 (82%), Gaps = 1/462 (0%)

Query: 1   APVDPGHLVRVCTILYQQQYSPESRLHSSLSSCNFNLTHEFFLQICNNFPLSWRPVYLFF 60
           +PV+P HL+RVCTILYQQQ SPE RL S L+S  F LTHEFFLQ+CN FP SWRPVY FF
Sbjct: 29  SPVNPDHLLRVCTILYQQQNSPEPRLTSKLASSEFQLTHEFFLQVCNKFPYSWRPVYRFF 88

Query: 61  QYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAE 120
            YTQ + P F H+ ++FN+M+D++GKSRNIDLFW+ L +M RR  VNDKTF IAL TL  
Sbjct: 89  LYTQ-SLPHFTHSPVSFNKMLDVVGKSRNIDLFWDLLNDMARRHFVNDKTFVIALRTLGG 147

Query: 121 VRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAY 180
            RELKK V FFH+MN  GCEY+L  LNKVV+ +C+ +LV EAK+++ KL E ++P+ + Y
Sbjct: 148 ARELKKCVEFFHLMNSNGCEYNLGTLNKVVEAMCKSRLVDEAKFVVFKLRECVRPDGVTY 207

Query: 181 GWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRV 240
             LI GYCD GDL+ ASK+WNLM DEGFE  +D V+KM+ETFFK+N+  EA+++F+ MR 
Sbjct: 208 KNLIIGYCDKGDLVGASKVWNLMEDEGFEADVDAVEKMMETFFKVNEYGEALRLFETMRF 267

Query: 241 KRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLR 300
           KRM++LG STY +VI W+CK+G +++A+ + EEM +RG+  ++ TL  ++YGLL R R+R
Sbjct: 268 KRMNELGASTYGLVIRWLCKKGMMARAHEVFEEMRERGVRVNDSTLGDVVYGLLTRRRVR 327

Query: 301 EAYKVVEEIEKPDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHL 360
           EAY+V E IE PD+ +YHG IKGLL+LRRA EATQVFREMI+RGCEPTMHTYIMLLQGHL
Sbjct: 328 EAYRVFEGIEVPDLCVYHGFIKGLLKLRRAGEATQVFREMIRRGCEPTMHTYIMLLQGHL 387

Query: 361 GKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNE 420
           G+RGRKG DPLVNFDTIFVGG+VKAGKS +A KYVERV+NRG+EVPRFDYNKFLHY+SNE
Sbjct: 388 GRRGRKGTDPLVNFDTIFVGGMVKAGKSKEATKYVERVLNRGMEVPRFDYNKFLHYFSNE 447

Query: 421 EGVVMFEEVGKKLREVGLADLADIFQRYGKKMATRERRRNRA 462
           EGV MFE+VGKKLREVGL DLADI  RYG+KMATR+RRR+R+
Sbjct: 448 EGVHMFEDVGKKLREVGLVDLADILDRYGQKMATRDRRRDRS 489

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15222719|ref|NP_173972.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75263259|sp|Q9FZD4.1|PPR59_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein At1g26500 gi|9797751|gb|AAF98569.1|AC013427_12 Contains similarity to a hypothetical protein T12C14_170 gi|7340718 from Arabidopsis thaliana BAC T12C14 gb|AL162507 and contains multiple PPR PF|01535 repeats [Arabidopsis thaliana] gi|332192576|gb|AEE30697.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]

 Score =  630 bits (1624), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 294/452 (65%), Positives = 364/452 (80%)

Query: 1   APVDPGHLVRVCTILYQQQYSPESRLHSSLSSCNFNLTHEFFLQICNNFPLSWRPVYLFF 60
            P++  HL+RVCTILYQQQ SP+SRL S LSS  F LTHEFFLQ+CNNFPLSWRPV+ FF
Sbjct: 39  TPINQDHLLRVCTILYQQQNSPDSRLVSKLSSTKFQLTHEFFLQVCNNFPLSWRPVHRFF 98

Query: 61  QYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAE 120
            Y+Q   P F H S T N+M+ IIG SRN+DLFWE  QE+G+R LVNDKTF+I L TLA 
Sbjct: 99  LYSQTHHPDFTHTSTTSNKMLAIIGNSRNMDLFWELAQEIGKRGLVNDKTFRIVLKTLAS 158

Query: 121 VRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAY 180
            RELKK VN+FH+MN  G  Y++E +N+ V+TLC+ KLV EAK++ +KL E+IKP+EI Y
Sbjct: 159 ARELKKCVNYFHLMNGFGYLYNVETMNRGVETLCKEKLVEEAKFVFIKLKEFIKPDEITY 218

Query: 181 GWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRV 240
             +I+G+CDVGDLIEA+K+WNLM DEGF+  I+   K++ET  K N+ DEA KVF +M  
Sbjct: 219 RTMIQGFCDVGDLIEAAKLWNLMMDEGFDVDIEAGKKIMETLLKKNQFDEASKVFYVMVS 278

Query: 241 KRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLR 300
           KR  DL    YR++IDW+CK G+I  A  + +EM +RG+  DNLT +S+IYGLL + R+ 
Sbjct: 279 KRGGDLDGGFYRVMIDWLCKNGRIDMARKVFDEMRERGVYVDNLTWASLIYGLLVKRRVV 338

Query: 301 EAYKVVEEIEKPDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHL 360
           EAY +VE +E PDIS+YHGLIKGL++++RA EAT+VFR+MI+RGCEP MHTY+MLLQGHL
Sbjct: 339 EAYGLVEGVENPDISIYHGLIKGLVKIKRASEATEVFRKMIQRGCEPIMHTYLMLLQGHL 398

Query: 361 GKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNE 420
           G+RGRKGPDPLVNFDTIFVGG++KAGK L+  KY+ER + RG+EVPRFDY+KFLHYYSNE
Sbjct: 399 GRRGRKGPDPLVNFDTIFVGGMIKAGKRLETTKYIERTLKRGLEVPRFDYSKFLHYYSNE 458

Query: 421 EGVVMFEEVGKKLREVGLADLADIFQRYGKKM 452
           EGVVMFEE+ KKLREV L DLADIFQRYG+KM
Sbjct: 459 EGVVMFEEMAKKLREVSLFDLADIFQRYGEKM 490

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297851040|ref|XP_002893401.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297339243|gb|EFH69660.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  627 bits (1617), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 294/452 (65%), Positives = 363/452 (80%)

Query: 1   APVDPGHLVRVCTILYQQQYSPESRLHSSLSSCNFNLTHEFFLQICNNFPLSWRPVYLFF 60
            P++  HL+RVCTILYQQQ SP+SRL S LSS  F LTHEFFLQ+CNNFPLSWRPV+ FF
Sbjct: 39  TPINQDHLLRVCTILYQQQNSPDSRLVSKLSSTKFQLTHEFFLQVCNNFPLSWRPVHRFF 98

Query: 61  QYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAE 120
            Y+Q   P F H S T N+M+ IIG SRN+DLFWE  QE+G+  LVNDKTF+I L TLA 
Sbjct: 99  LYSQIHHPDFVHTSTTSNKMLAIIGNSRNMDLFWELAQEIGKHGLVNDKTFRIVLKTLAS 158

Query: 121 VRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAY 180
            RELKK VNFFH+MND G  Y+++ +N+ V+TLC+ KLV EAK++++KL E+IKP+EI Y
Sbjct: 159 ARELKKCVNFFHLMNDFGYLYNVQTMNRGVETLCKEKLVEEAKFVVIKLREFIKPDEITY 218

Query: 181 GWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRV 240
             +IKG+CDVGDLI+A+K+WNLM D+GFE  I+   K++ETF K N+ DEA KVF +M  
Sbjct: 219 RTMIKGFCDVGDLIKAAKLWNLMMDDGFEVDIEAGKKIMETFLKKNQFDEASKVFHVMVS 278

Query: 241 KRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLR 300
           KR  DL    YR++IDW+CK G+I  A  + +EM +RG++ DNLT +SIIYGLL + R+ 
Sbjct: 279 KRGCDLDGCFYRVMIDWLCKNGRIDMARKVFDEMRERGVQVDNLTWASIIYGLLVKRRVA 338

Query: 301 EAYKVVEEIEKPDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHL 360
           EAYK VE +E PDIS+YH LIKGL++++RA EAT+VFR+MI+RGCEP MHTY+MLLQGHL
Sbjct: 339 EAYKTVEAVENPDISIYHALIKGLVKIKRASEATEVFRKMIQRGCEPIMHTYLMLLQGHL 398

Query: 361 GKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNE 420
           G+RGRKGPDPLVNFDTIFVGG++KAGK L+  KYVER + RG+EV RFDY+KFLH YSNE
Sbjct: 399 GRRGRKGPDPLVNFDTIFVGGMIKAGKRLETTKYVERTLKRGLEVSRFDYSKFLHCYSNE 458

Query: 421 EGVVMFEEVGKKLREVGLADLADIFQRYGKKM 452
           EGV MFEE+ KKLREV L DLADIFQRYG+KM
Sbjct: 459 EGVFMFEEMAKKLREVSLFDLADIFQRYGEKM 490

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326491941|dbj|BAJ98195.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 220/465 (47%), Positives = 295/465 (63%), Gaps = 13/465 (2%)

Query: 3   VDPGHLVRVCTILYQQQYSPESRLHSSLSSCNFNLT----HEFFLQICNNFPLSWRPVYL 58
            DP  LVR+CTILYQQQ +P++ L   LS+           E FLQ    FPLSWRPV  
Sbjct: 27  TDPALLVRLCTILYQQQNAPDAVLQRRLSALPLPSAPADLRELFLQASARFPLSWRPVQR 86

Query: 59  FFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTL 118
              +   A+  FAH+  T  R +D++ KS N+DL   TL  +    L++D   + A+  L
Sbjct: 87  LLAHLT-ARHGFAHSPATAARFLDVLAKSSNVDLLHSTLLAL-PTGLLSDAALRAAIRGL 144

Query: 119 AEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSE---WIKP 175
           A  RE+ K+     +  +      L  +  VV ++C+   V E    ++K +E    + P
Sbjct: 145 APAREVGKVSALLTLFPEAQRPRVLAFVVDVVCSVCKLPDVAEK---VVKQAEHRYGLAP 201

Query: 176 NEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVF 235
                  L+  YC  G   +A  +WN M   G EP     ++++ T FK N+  +AMKVF
Sbjct: 202 CGRCCDLLVVAYCRAGMFADACSVWNGMEKRGIEPGAAAYEEIVVTLFKNNRIPDAMKVF 261

Query: 236 QMMRVKRMD-DLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLL 294
             MR +R+    G + Y  V+ W+CK G+   A+ +L EMFKRG+  D   L  ++YGLL
Sbjct: 262 DGMRKRRLSAGGGGACYHAVVSWLCKEGRTWSAFMVLAEMFKRGVGVDGEVLGDLVYGLL 321

Query: 295 ARGRLREAYKVVEEIEKPDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIM 354
           AR R+RE Y V   +++ DI+LYHGL+KGL+R++RA EAT+VFREM+  GCEP MHTYIM
Sbjct: 322 ARRRVREGYSVFHGVKEKDIALYHGLMKGLVRIKRAGEATEVFREMVASGCEPNMHTYIM 381

Query: 355 LLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFL 414
           LLQGHLGKRGRKG DPLVNF++IFVGGLVKAG++L+A K+VER M  GV+VPRFDYNKFL
Sbjct: 382 LLQGHLGKRGRKGRDPLVNFESIFVGGLVKAGRTLEATKFVERTMWGGVDVPRFDYNKFL 441

Query: 415 HYYSNEEGVVMFEEVGKKLREVGLADLADIFQRYGKKMATRERRR 459
           HY+SN+EGV MFEEVG++LRE G  DL DIF  YG++MATR++RR
Sbjct: 442 HYFSNDEGVAMFEEVGRRLRETGHVDLGDIFLTYGERMATRDKRR 486

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357116472|ref|XP_003560005.1| PREDICTED: disease resistance protein RPM1-like [Brachypodium distachyon]

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 223/464 (48%), Positives = 290/464 (62%), Gaps = 7/464 (1%)

Query: 1   APVDPGHLVRVCTILYQQQYSPESRLHSSLSSCNFNLT----HEFFLQICNNFPLSWRPV 56
            P DP  LVR+CTILYQ Q++P++ L   LS+           E FLQ    FPLSWRPV
Sbjct: 4   GPTDPALLVRLCTILYQHQHAPDAALQRRLSALPIPAAPADLRELFLQATARFPLSWRPV 63

Query: 57  YLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALM 116
           +    +   AQ  FAH+  T  R +D++ KS N DL   TL  +    L      + A+ 
Sbjct: 64  HRLLAHL-TAQHGFAHSPATAARFLDVLAKSSNFDLLHSTLLALPPGLLSA-AALRAAIR 121

Query: 117 TLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPN 176
            LA  RE+ K+     +  +      LE +  VV ++C+   V E      +    I  N
Sbjct: 122 GLAPAREVGKVSALLALFPEAQRSRVLEFITDVVCSVCKLPDVAEKVIKQAEHRHSIARN 181

Query: 177 EIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQ 236
                 L+  YC  G   +A  +WN M   G EP     ++++ T FK N+  +AMKVF 
Sbjct: 182 GRCCELLVVAYCRAGMFADACSVWNGMEKRGIEPGGAAYEEIVVTLFKNNRFADAMKVFD 241

Query: 237 MMRVKRMDDLGLST-YRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLA 295
            MR + +   G  T Y  V+ W+CK G+   A+ +  EM K G+E D   L  ++YGLL+
Sbjct: 242 GMRKRGLSARGGGTCYHAVVSWLCKEGRTWCAFMVFAEMLKIGVEVDGEVLGDLVYGLLS 301

Query: 296 RGRLREAYKVVEEIEKPDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIML 355
           R R RE Y+V   +++ DI+LYHGL+KGLLR++RAREAT+VFREM+ RGCEP MHTYIML
Sbjct: 302 RRRAREGYRVFHGVKEKDIALYHGLMKGLLRIKRAREATEVFREMVARGCEPNMHTYIML 361

Query: 356 LQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLH 415
           LQGHLGKRGRKG DPLVNF++IFVGGLVKAG++L+A K+VER M  GV+VPRFDYNKFLH
Sbjct: 362 LQGHLGKRGRKGRDPLVNFESIFVGGLVKAGRTLEATKFVERTMWGGVDVPRFDYNKFLH 421

Query: 416 YYSNEEGVVMFEEVGKKLREVGLADLADIFQRYGKKMATRERRR 459
           Y+SNEEGV MFEEVG++LREVGL DL DI   YG++MATR+RRR
Sbjct: 422 YFSNEEGVPMFEEVGRRLREVGLVDLGDILLIYGERMATRDRRR 465

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	465
TAIR|locus:2197925	505	AT1G26500 "AT1G26500" [Arabido	0.989	0.910	0.634	2.7e-162
TAIR|locus:2096099	599	AT3G62470 "AT3G62470" [Arabido	0.980	0.761	0.293	2.2e-57
TAIR|locus:2185455	598	AT5G14820 "AT5G14820" [Arabido	0.980	0.762	0.291	9.6e-57
TAIR|locus:2096074	599	AT3G62540 "AT3G62540" [Arabido	0.980	0.761	0.291	2e-56
TAIR|locus:2094394	562	AT3G22670 [Arabidopsis thalian	0.774	0.640	0.261	8.4e-29
TAIR|locus:2083671	523	AT3G15200 [Arabidopsis thalian	0.8	0.711	0.249	2.3e-26
TAIR|locus:2168078	907	AT5G59900 "AT5G59900" [Arabido	0.625	0.320	0.264	1.6e-24
TAIR|locus:2155730	915	AT5G65560 "AT5G65560" [Arabido	0.804	0.408	0.242	3.7e-24
TAIR|locus:2026346	510	AT1G71060 [Arabidopsis thalian	0.733	0.668	0.227	9.3e-24
TAIR|locus:2083976	754	MEE40 "maternal effect embryo	0.726	0.448	0.254	3e-23

TAIR|locus:2197925 AT1G26500 "AT1G26500" [Arabidopsis thaliana (taxid:3702)]

 Score = 1580 (561.2 bits), Expect = 2.7e-162, P = 2.7e-162
 Identities = 292/460 (63%), Positives = 362/460 (78%)

Query:     2 PVDPGHLVRVCTILYQQQYXXXXXXXXXXXXCNFNLTHEFFLQICNNFPLSWRPVYLFFQ 61
             P++  HL+RVCTILYQQQ               F LTHEFFLQ+CNNFPLSWRPV+ FF 
Sbjct:    40 PINQDHLLRVCTILYQQQNSPDSRLVSKLSSTKFQLTHEFFLQVCNNFPLSWRPVHRFFL 99

Query:    62 YTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEV 121
             Y+Q   P F H S T N+M+ IIG SRN+DLFWE  QE+G+R LVNDKTF+I L TLA  
Sbjct:   100 YSQTHHPDFTHTSTTSNKMLAIIGNSRNMDLFWELAQEIGKRGLVNDKTFRIVLKTLASA 159

Query:   122 RELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYG 181
             RELKK VN+FH+MN  G  Y++E +N+ V+TLC+ KLV EAK++ +KL E+IKP+EI Y 
Sbjct:   160 RELKKCVNYFHLMNGFGYLYNVETMNRGVETLCKEKLVEEAKFVFIKLKEFIKPDEITYR 219

Query:   182 WLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVK 241
              +I+G+CDVGDLIEA+K+WNLM DEGF+  I+   K++ET  K N+ DEA KVF +M  K
Sbjct:   220 TMIQGFCDVGDLIEAAKLWNLMMDEGFDVDIEAGKKIMETLLKKNQFDEASKVFYVMVSK 279

Query:   242 RMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLRE 301
             R  DL    YR++IDW+CK G+I  A  + +EM +RG+  DNLT +S+IYGLL + R+ E
Sbjct:   280 RGGDLDGGFYRVMIDWLCKNGRIDMARKVFDEMRERGVYVDNLTWASLIYGLLVKRRVVE 339

Query:   302 AYKVVEEIEKPDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLG 361
             AY +VE +E PDIS+YHGLIKGL++++RA EAT+VFR+MI+RGCEP MHTY+MLLQGHLG
Sbjct:   340 AYGLVEGVENPDISIYHGLIKGLVKIKRASEATEVFRKMIQRGCEPIMHTYLMLLQGHLG 399

Query:   362 KRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNEE 421
             +RGRKGPDPLVNFDTIFVGG++KAGK L+  KY+ER + RG+EVPRFDY+KFLHYYSNEE
Sbjct:   400 RRGRKGPDPLVNFDTIFVGGMIKAGKRLETTKYIERTLKRGLEVPRFDYSKFLHYYSNEE 459

Query:   422 GVVMFEEVGKKLREVGLADLADIFQRYGKKMATRERRRNR 461
             GVVMFEE+ KKLREV L DLADIFQRYG+KM TRERRR+R
Sbjct:   460 GVVMFEEMAKKLREVSLFDLADIFQRYGEKMTTRERRRDR 499

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2096099 AT3G62470 "AT3G62470" [Arabidopsis thaliana (taxid:3702)]

 Score = 590 (212.7 bits), Expect = 2.2e-57, P = 2.2e-57
 Identities = 140/477 (29%), Positives = 252/477 (52%)

Query:     4 DPGHLVRVCTILYQQQYXXXXXXXXXXXXCNFNLTHEFFLQICNNFPLSWRPVYLFFQYT 63
             +P  + RVC ++  + +               +L+H+  +++   F  + +P + FF + 
Sbjct:   127 NPEEVERVCKVI-DELFALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRFFCWA 185

Query:    64 QKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRE 123
              + Q  FAH+S T+N M+ I+ K+R  +     L+EMG + L+  +TF IA+   A  +E
Sbjct:   186 AERQG-FAHDSRTYNSMMSILAKTRQFETMVSVLEEMGTKGLLTMETFTIAMKAFAAAKE 244

Query:   124 LKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWL 183
              KK V  F +M     +  +E +N ++ +L + KL  EA+ L  KL E   PN + Y  L
Sbjct:   245 RKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYTVL 304

Query:   184 IKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRM 243
             + G+C V +LIEA++IWN M D+G +P I   + M+E   +  K  +A+K+F +M+ K  
Sbjct:   305 LNGWCRVRNLIEAARIWNDMIDQGLKPDIVAHNVMLEGLLRSRKKSDAIKLFHVMKSKGP 364

Query:   244 DDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAY 303
                 + +Y I+I   CK+  +  A    ++M   G++ D    + +I G   + +L   Y
Sbjct:   365 CP-NVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVY 423

Query:   304 KVVEEIEK----PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGH 359
             ++++E+++    PD   Y+ LIK +   +    AT+++ +MI+   EP++HT+ M+++ +
Sbjct:   424 ELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHATRIYNKMIQNEIEPSIHTFNMIMKSY 483

Query:   360 LGKR----GR--------KGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPR 407
                R    GR        KG  P  N  T+ + GL+  GKS +A +Y+E ++++G++ P 
Sbjct:   484 FMARNYEMGRAVWEEMIKKGICPDDNSYTVLIRGLIGEGKSREACRYLEEMLDKGMKTPL 543

Query:   408 FDYNKFLHYYSNEEGVVMFEEVGKKLREVGLADLADIFQRYGKKMATRERRRNRAIE 464
              DYNKF   +       +FEE+ ++ +  G    A+IF R+ +   TR R + R +E
Sbjct:   544 IDYNKFAADFHRGGQPEIFEELAQRAKFSGKFAAAEIFARWAQM--TRRRFKQRFME 598

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2185455 AT5G14820 "AT5G14820" [Arabidopsis thaliana (taxid:3702)]

 Score = 584 (210.6 bits), Expect = 9.6e-57, P = 9.6e-57
 Identities = 139/477 (29%), Positives = 250/477 (52%)

Query:     4 DPGHLVRVCTILYQQQYXXXXXXXXXXXXCNFNLTHEFFLQICNNFPLSWRPVYLFFQYT 63
             +P  + RVC ++  + +               +L+H+  +++   F  + +P + FF + 
Sbjct:   126 NPEEVERVCKVI-DELFALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRFFCWA 184

Query:    64 QKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRE 123
              + Q  FAH+S T+N M+ I+ K+R  +     L+EMG + L+  +TF IA+   A  +E
Sbjct:   185 AERQG-FAHDSRTYNSMMSILAKTRQFETMVSVLEEMGTKGLLTMETFTIAMKAFAAAKE 243

Query:   124 LKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWL 183
              KK V  F +M     +  +E +N ++ +L + KL  EA+ L  KL E   PN + Y  L
Sbjct:   244 RKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYTVL 303

Query:   184 IKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRM 243
             + G+C V +LIEA++IWN M D G +P I   + M+E   +  K  +A+K+F +M+ K  
Sbjct:   304 LNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGP 363

Query:   244 DDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAY 303
                 + +Y I+I   CK+  +  A    ++M   G++ D    + +I G   + +L   Y
Sbjct:   364 CP-NVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVY 422

Query:   304 KVVEEIEK----PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGH 359
             ++++E+++    PD   Y+ LIK +   +     T+++ +MI+   EP++HT+ M+++ +
Sbjct:   423 ELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIMKSY 482

Query:   360 LGKR----GR--------KGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPR 407
                R    GR        KG  P  N  T+ + GL+  GKS +A +Y+E ++++G++ P 
Sbjct:   483 FVARNYEMGRAVWDEMIKKGICPDDNSYTVLIRGLISEGKSREACRYLEEMLDKGMKTPL 542

Query:   408 FDYNKFLHYYSNEEGVVMFEEVGKKLREVGLADLADIFQRYGKKMATRERRRNRAIE 464
              DYNKF   +       +FEE+ ++ +  G    A+IF R+ +   TR R + R +E
Sbjct:   543 IDYNKFAADFHRGGQPEIFEELAQRAKFSGKFAAAEIFARWAQM--TRRRCKQRFME 597

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2096074 AT3G62540 "AT3G62540" [Arabidopsis thaliana (taxid:3702)]

 Score = 581 (209.6 bits), Expect = 2.0e-56, P = 2.0e-56
 Identities = 139/477 (29%), Positives = 249/477 (52%)

Query:     4 DPGHLVRVCTILYQQQYXXXXXXXXXXXXCNFNLTHEFFLQICNNFPLSWRPVYLFFQYT 63
             +P  + RVC ++  + +               +L+H+  +++   F  + +P + FF + 
Sbjct:   127 NPEEVERVCKVI-DELFALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRFFCWA 185

Query:    64 QKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRE 123
              + Q  FAH S T+N M+ I+ K+R  +     L+EMG + L+  +TF IA+   A  +E
Sbjct:   186 AERQG-FAHASRTYNSMMSILAKTRQFETMVSVLEEMGTKGLLTMETFTIAMKAFAAAKE 244

Query:   124 LKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWL 183
              KK V  F +M     +  +E +N ++ +L + KL  EA+ L  KL E   PN + Y  L
Sbjct:   245 RKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYTVL 304

Query:   184 IKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRM 243
             + G+C V +LIEA++IWN M D G +P I   + M+E   +  K  +A+K+F +M+ K  
Sbjct:   305 LNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGP 364

Query:   244 DDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAY 303
                 + +Y I+I   CK+  +  A    ++M   G++ D    + +I G   + +L   Y
Sbjct:   365 CP-NVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVY 423

Query:   304 KVVEEIEK----PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGH 359
             ++++E+++    PD   Y+ LIK +   +     T+++ +MI+   EP++HT+ M+++ +
Sbjct:   424 ELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIMKSY 483

Query:   360 LGKR----GR--------KGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPR 407
                R    GR        KG  P  N  T+ + GL+  GKS +A +Y+E ++++G++ P 
Sbjct:   484 FVARNYEMGRAVWDEMIKKGICPDDNSYTVLIRGLISEGKSREACRYLEEMLDKGMKTPL 543

Query:   408 FDYNKFLHYYSNEEGVVMFEEVGKKLREVGLADLADIFQRYGKKMATRERRRNRAIE 464
              DYNKF   +       +FEE+ ++ +  G    A+IF R+ +   TR R + R +E
Sbjct:   544 IDYNKFAADFHRGGQPEIFEELAQRAKFSGKFAAAEIFARWAQM--TRRRCKQRFME 598

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2094394 AT3G22670 [Arabidopsis thaliana (taxid:3702)]

 Score = 331 (121.6 bits), Expect = 8.4e-29, P = 8.4e-29
 Identities = 100/382 (26%), Positives = 178/382 (46%)

Query:    33 CNFNLTHEFFLQICNNFPLSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDL 92
             C+  +T    LQ+   F   W   Y FF +   +Q  + H+  T+N MVD++GK RN DL
Sbjct:   126 CDVVVTESLVLQVLRRFSNGWNQAYGFFIWAN-SQTGYVHSGHTYNAMVDVLGKCRNFDL 184

Query:    93 FWETLQEMGRR---RLVNDKTFKIALMTLAEVRELKKMVN-FFHIMNDCGCEYSLEMLNK 148
              WE + EM +    +LV   T    +  LA+  +  K V+ F  +    G +     +N 
Sbjct:   185 MWELVNEMNKNEESKLVTLDTMSKVMRRLAKSGKYNKAVDAFLEMEKSYGVKTDTIAMNS 244

Query:   149 VVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGF 208
             ++  L +   +  A  + LKL + IKP+   +  LI G+C      +A  + +LM    F
Sbjct:   245 LMDALVKENSIEHAHEVFLKLFDTIKPDARTFNILIHGFCKARKFDDARAMMDLMKVTEF 304

Query:   209 EPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAY 268
              P +      +E + K        ++ + MR    +   + TY IV+  + K  ++++A 
Sbjct:   305 TPDVVTYTSFVEAYCKEGDFRRVNEMLEEMRENGCNP-NVVTYTIVMHSLGKSKQVAEAL 363

Query:   269 TMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIE----KPDISLYHGLIKGL 324
              + E+M + G   D    SS+I+ L   GR ++A ++ E++     + D+ +Y+ +I   
Sbjct:   364 GVYEKMKEDGCVPDAKFYSSLIHILSKTGRFKDAAEIFEDMTNQGVRRDVLVYNTMISAA 423

Query:   325 LRLRRAREATQVFREMI-KRG--CEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGG 381
             L   R   A ++ + M  + G  C P + TY  LL+    K+  K    L+    I +  
Sbjct:   424 LHHSRDEMALRLLKRMEDEEGESCSPNVETYAPLLKMCCHKKKMK----LLG---ILLHH 476

Query:   382 LVKAGKSLDAAKYVERVMNRGV 403
             +VK   S+D + Y+  ++ RG+
Sbjct:   477 MVKNDVSIDVSTYI--LLIRGL 496

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2083671 AT3G15200 [Arabidopsis thaliana (taxid:3702)]

 Score = 315 (115.9 bits), Expect = 2.3e-26, P = 2.3e-26
 Identities = 98/393 (24%), Positives = 182/393 (46%)

Query:    33 CNFNLTHEFFLQICNNFPLSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDL 92
             C  +LT E  L++ N     W+P Y+  Q   K Q     +S+ +N ++D++GK R  + 
Sbjct:   103 CGIDLTEELVLEVVNRNRSDWKPAYILSQLVVK-QSVHLSSSMLYNEILDVLGKMRRFEE 161

Query:    93 FWETLQEMGRRR-LVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVK 151
             F +   EM +R   VN+KT+++ L   A   ++ + V  F    + G +  L   + ++ 
Sbjct:   162 FHQVFDEMSKRDGFVNEKTYEVLLNRYAAAHKVDEAVGVFERRKEFGIDDDLVAFHGLLM 221

Query:   152 TLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPS 211
              LC+ K V  A+ L          +  A   ++ G+C +G++ EA + W  +      P 
Sbjct:   222 WLCRYKHVEFAETLFCSRRREFGCDIKAMNMILNGWCVLGNVHEAKRFWKDIIASKCRPD 281

Query:   212 IDVVDKMIETFFKINKDDEAMKVFQMM-RVKRMDDLGLSTYRIVIDWMCKRGKISQAYTM 270
             +     MI    K  K  +AM++++ M   +R  D+ +     VID +C + +I +A  +
Sbjct:   282 VVSYGTMINALTKKGKLGKAMELYRAMWDTRRNPDVKICNN--VIDALCFKKRIPEALEV 339

Query:   271 LEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEKPDISLYHGLI--KGLLRL- 327
               E+ ++G + + +T +S++  L    R  + +++VEE+E    S     +    LL+  
Sbjct:   340 FREISEKGPDPNVVTYNSLLKHLCKIRRTEKVWELVEEMELKGGSCSPNDVTFSYLLKYS 399

Query:   328 RRAREATQVFREMIKRGCEPTMHTYIMLLQGHL------------GKRGRKGPDPLVNFD 375
             +R+++   V   M K  CE T   Y ++ + ++             +  R G  P     
Sbjct:   400 QRSKDVDIVLERMAKNKCEMTSDLYNLMFRLYVQWDKEEKVREIWSEMERSGLGPDQRTY 459

Query:   376 TIFVGGLVKAGKSLDAAKYVERVMNRG-VEVPR 407
             TI + GL   GK  +A  Y + +M++G V  PR
Sbjct:   460 TIRIHGLHTKGKIGEALSYFQEMMSKGMVPEPR 492

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0022626 "cytosolic ribosome" evidence=IDA

TAIR|locus:2168078 AT5G59900 "AT5G59900" [Arabidopsis thaliana (taxid:3702)]

 Score = 306 (112.8 bits), Expect = 1.6e-24, P = 1.6e-24
 Identities = 80/302 (26%), Positives = 153/302 (50%)

Query:    73 NSITFNRMVDIIGKSRNI---DLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVN 129
             N   +N ++D + K R     +L ++ + ++G R   ND T+ I +       +L   ++
Sbjct:   366 NLFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRP--NDVTYSILIDMFCRRGKLDTALS 423

Query:   130 FFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAK-YLILKLSEWIKPNEIAYGWLIKGYC 188
             F   M D G + S+   N ++   C+   +  A+ ++   +++ ++P  + Y  L+ GYC
Sbjct:   424 FLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYC 483

Query:   189 DVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGL 248
               G + +A ++++ MT +G  PSI     ++   F+     +A+K+F  M    +    +
Sbjct:   484 SKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRV 543

Query:   249 STYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEE 308
              TY ++I+  C+ G +S+A+  L+EM ++GI  D  +   +I+GL   G+  EA   V+ 
Sbjct:   544 -TYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDG 602

Query:   309 IEKPDISL----YHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRG 364
             + K +  L    Y GL+ G  R  +  EA  V +EM++RG +  +  Y +L+ G L  + 
Sbjct:   603 LHKGNCELNEICYTGLLHGFCREGKLEEALSVCQEMVQRGVDLDLVCYGVLIDGSLKHKD 662

Query:   365 RK 366
             RK
Sbjct:   663 RK 664

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2155730 AT5G65560 "AT5G65560" [Arabidopsis thaliana (taxid:3702)]

 Score = 303 (111.7 bits), Expect = 3.7e-24, P = 3.7e-24
 Identities = 97/400 (24%), Positives = 183/400 (45%)

Query:    73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVND-KTFKIALMTLAEVRELKKMVNFF 131
             N + +  ++  +  +R ID   +   +M         +T+ + + +L       + +N  
Sbjct:   287 NEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLV 346

Query:   132 HIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSE-WIKPNEIAYGWLIKGYCDV 190
               M + G + ++     ++ +LC +    +A+ L+ ++ E  + PN I Y  LI GYC  
Sbjct:   347 KEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKR 406

Query:   191 GDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVF-QMMRVKRMDDLGLS 249
             G + +A  +  LM      P+    +++I+ + K N   +AM V  +M+  K + D+   
Sbjct:   407 GMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSNVH-KAMGVLNKMLERKVLPDV--V 463

Query:   250 TYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEI 309
             TY  +ID  C+ G    AY +L  M  RG+  D  T +S+I  L    R+ EA  + + +
Sbjct:   464 TYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSL 523

Query:   310 EK----PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLG---- 361
             E+    P++ +Y  LI G  +  +  EA  +  +M+ + C P   T+  L+ G       
Sbjct:   524 EQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKL 583

Query:   362 --------KRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKF 413
                     K  + G  P V+ DTI +  L+K G    A    +++++ G +     Y  F
Sbjct:   584 KEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTF 643

Query:   414 LHYYSNEEGVVMFEEVGKKLREVGLA-DL---ADIFQRYG 449
             +  Y  E  ++  E++  K+RE G++ DL   + + + YG
Sbjct:   644 IQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYG 683

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2026346 AT1G71060 [Arabidopsis thaliana (taxid:3702)]

 Score = 294 (108.6 bits), Expect = 9.3e-24, P = 9.3e-24
 Identities = 83/365 (22%), Positives = 175/365 (47%)

Query:    60 FQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLA 119
             F++ +  Q  F H +  +N +++ +GK +   L W  + +M  ++L++ +TF +     A
Sbjct:   115 FKWAEN-QKGFKHTTSNYNALIESLGKIKQFKLIWSLVDDMKAKKLLSKETFALISRRYA 173

Query:   120 EVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEW-IKPNEI 178
               R++K+ +  FH M + G +      N+++ TL + + V +A+ +  K+ +   +P+  
Sbjct:   174 RARKVKEAIGAFHKMEEFGFKMESSDFNRMLDTLSKSRNVGDAQKVFDKMKKKRFEPDIK 233

Query:   179 AYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMM 238
             +Y  L++G+    +L+   ++   M DEGFEP +     +I    K  K +EA++ F  M
Sbjct:   234 SYTILLEGWGQELNLLRVDEVNREMKDEGFEPDVVAYGIIINAHCKAKKYEEAIRFFNEM 293

Query:   239 RVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGR 298
               +         +  +I+ +    K++ A    E     G   +  T ++++       R
Sbjct:   294 EQRNCKP-SPHIFCSLINGLGSEKKLNDALEFFERSKSSGFPLEAPTYNALVGAYCWSQR 352

Query:   299 LREAYKVVEEIEK----PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIM 354
             + +AYK V+E+      P+   Y  ++  L+R++R++EA +V++ M    CEPT+ TY +
Sbjct:   353 MEDAYKTVDEMRLKGVGPNARTYDIILHHLIRMQRSKEAYEVYQTM---SCEPTVSTYEI 409

Query:   355 LLQGHLGK-------------RGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNR 401
             +++    K             +G KG  P ++  +  +  L    K  +A +Y   +++ 
Sbjct:   410 MVRMFCNKERLDMAIKIWDEMKG-KGVLPGMHMFSSLITALCHENKLDEACEYFNEMLDV 468

Query:   402 GVEVP 406
             G+  P
Sbjct:   469 GIRPP 473

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2083976 MEE40 "maternal effect embryo arrest 40" [Arabidopsis thaliana (taxid:3702)]

 Score = 294 (108.6 bits), Expect = 3.0e-23, P = 3.0e-23
 Identities = 91/358 (25%), Positives = 165/358 (46%)

Query:    73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRR-LVNDK-TFKIALMTLAEVRELKKMVNF 130
             ++++ N +V    K   ++     +QEM  +     D+ TF   +  L +   +K  +  
Sbjct:   258 SNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEI 317

Query:   131 FHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEA-KYLILKLSEWIKPNEIAYGWLIKGYCD 189
               +M   G +  +   N V+  LC+   V EA + L   ++    PN + Y  LI   C 
Sbjct:   318 MDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCK 377

Query:   190 VGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLS 249
                + EA+++  ++T +G  P +   + +I+          AM++F+ MR K  +     
Sbjct:   378 ENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEF- 436

Query:   250 TYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEI 309
             TY ++ID +C +GK+ +A  ML++M   G     +T +++I G     + REA ++ +E+
Sbjct:   437 TYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEM 496

Query:   310 EKPDIS----LYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQ-----GHL 360
             E   +S     Y+ LI GL + RR  +A Q+  +MI  G +P  +TY  LL      G +
Sbjct:   497 EVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDI 556

Query:   361 GKRG-------RKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYN 411
              K           G +P +      + GL KAG+   A+K +  +  +G+ +    YN
Sbjct:   557 KKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYN 614

GO:0005739 "mitochondrion" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA;IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FZD4	PPR59_ARATH	No assigned EC number	0.6504	0.9720	0.8950	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	465
pfam13041	50	pfam13041, PPR_2, PPR repeat family	6e-09
pfam13041	50	pfam13041, PPR_2, PPR repeat family	9e-09
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	6e-08
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	4e-07
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	3e-05
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	9e-05
pfam13041	50	pfam13041, PPR_2, PPR repeat family	2e-04
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	4e-04
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	0.002

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 51.6 bits (125), Expect = 6e-09
 Identities = 19/48 (39%), Positives = 30/48 (62%)

Query: 312 PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGH 359
           PD+  Y+ LI G  +  +  EA ++F EM KRG +P ++TY +L+ G 
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 50.9 bits (123), Expect = 9e-09
 Identities = 20/44 (45%), Positives = 28/44 (63%)

Query: 250 TYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGL 293
           TY  +ID  CK+GK+ +A  +  EM KRGI+ +  T S +I GL
Sbjct: 5   TYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 54.9 bits (132), Expect = 6e-08
 Identities = 42/190 (22%), Positives = 93/190 (48%), Gaps = 9/190 (4%)

Query: 173 IKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAM 232
           I P+ I  G L+K   + G +  A +++ ++ +   + + +V    + +  +    D A+
Sbjct: 575 IDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFAL 634

Query: 233 KVFQMMRVKRM--DDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSII 290
            ++  M+ K +  D++  S    ++D     G + +A+ +L++  K+GI+   ++ SS++
Sbjct: 635 SIYDDMKKKGVKPDEVFFSA---LVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLM 691

Query: 291 YGLLARGRLREAYKVVEEIE----KPDISLYHGLIKGLLRLRRAREATQVFREMIKRGCE 346
                    ++A ++ E+I+    +P +S  + LI  L    +  +A +V  EM + G  
Sbjct: 692 GACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLC 751

Query: 347 PTMHTYIMLL 356
           P   TY +LL
Sbjct: 752 PNTITYSILL 761

Length = 1060

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 52.2 bits (125), Expect = 4e-07
 Identities = 31/143 (21%), Positives = 68/143 (47%)

Query: 219 IETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRG 278
           IE      +  EA+++F+++       L  STY  +++       I     +   +   G
Sbjct: 94  IEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG 153

Query: 279 IEADNLTLSSIIYGLLARGRLREAYKVVEEIEKPDISLYHGLIKGLLRLRRAREATQVFR 338
            E D   ++ ++   +  G L +A ++ +E+ + +++ +  +I GL+     REA  +FR
Sbjct: 154 FEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFR 213

Query: 339 EMIKRGCEPTMHTYIMLLQGHLG 361
           EM + G +    T++++L+   G
Sbjct: 214 EMWEDGSDAEPRTFVVMLRASAG 236

Length = 697

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 46.0 bits (109), Expect = 3e-05
 Identities = 58/313 (18%), Positives = 113/313 (36%), Gaps = 81/313 (25%)

Query: 114 ALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWI 173
           A + L  +R +K +  ++H+ +  G E    M+N+V+    +  ++++A+ L  ++ E  
Sbjct: 132 ACIALKSIRCVKAV--YWHVESS-GFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE-- 186

Query: 174 KPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKM--------------- 218
             N  ++G +I G  D G+  EA  ++  M ++G +        M               
Sbjct: 187 -RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQ 245

Query: 219 --------------------IETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWM 258
                               I+ + K    ++A  VF  M  K         +  ++   
Sbjct: 246 LHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTT-----VAWNSMLAGY 300

Query: 259 CKRGKISQAYTMLEEMFKRGIEADNLTLSSII----------------YGLLAR------ 296
              G   +A  +  EM   G+  D  T S +I                 GL+        
Sbjct: 301 ALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDI 360

Query: 297 -------------GRLREAYKVVEEIEKPDISLYHGLIKGLLRLRRAREATQVFREMIKR 343
                        GR+ +A  V + + + ++  ++ LI G     R  +A ++F  MI  
Sbjct: 361 VANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAE 420

Query: 344 GCEPTMHTYIMLL 356
           G  P   T++ +L
Sbjct: 421 GVAPNHVTFLAVL 433

Length = 697

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 39.4 bits (93), Expect = 9e-05
 Identities = 15/32 (46%), Positives = 21/32 (65%)

Query: 317 YHGLIKGLLRLRRAREATQVFREMIKRGCEPT 348
           Y+ LI GL +  R  EA ++F+EM +RG EP 
Sbjct: 3   YNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 38.5 bits (91), Expect = 2e-04
 Identities = 15/38 (39%), Positives = 23/38 (60%)

Query: 175 PNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSI 212
           P+ + Y  LI GYC  G + EA K++N M   G +P++
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNV 38

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 37.1 bits (87), Expect = 4e-04
 Identities = 15/33 (45%), Positives = 23/33 (69%)

Query: 250 TYRIVIDWMCKRGKISQAYTMLEEMFKRGIEAD 282
           TY  +ID +CK G++ +A  + +EM +RGIE D
Sbjct: 2   TYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 40.6 bits (95), Expect = 0.002
 Identities = 41/167 (24%), Positives = 67/167 (40%), Gaps = 9/167 (5%)

Query: 183 LIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVV--DKMIETFFKINKDDEAMKVFQMMRV 240
           LI  Y   GD++ A  +++ M      P  D +  + MI  +F+  +  E +++F  MR 
Sbjct: 228 LITMYVKCGDVVSARLVFDRM------PRRDCISWNAMISGYFENGECLEGLELFFTMRE 281

Query: 241 KRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLR 300
             +D   L T   VI      G       M   + K G   D    +S+I   L+ G   
Sbjct: 282 LSVDP-DLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWG 340

Query: 301 EAYKVVEEIEKPDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEP 347
           EA KV   +E  D   +  +I G  +     +A + +  M +    P
Sbjct: 341 EAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSP 387

Length = 857

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	465
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.97
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.96
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.93
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.92
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.89
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.88
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.88
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.88
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.87
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.86
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.85
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.84
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.83
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.83
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.79
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.78
PRK14574	822	hmsH outer membrane protein; Provisional	99.77
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.76
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.7
PRK14574	822	hmsH outer membrane protein; Provisional	99.7
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.68
KOG2076	895	consensus RNA polymerase III transcription factor	99.67
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.66
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.66
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.65
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.65
KOG2076	895	consensus RNA polymerase III transcription factor	99.64
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.64
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.64
KOG2003	840	consensus TPR repeat-containing protein [General f	99.63
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.61
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.61
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.59
KOG1126	638	consensus DNA-binding cell division cycle control	99.57
KOG1126	638	consensus DNA-binding cell division cycle control	99.56
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.55
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.55
KOG2003	840	consensus TPR repeat-containing protein [General f	99.55
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.54
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.54
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.51
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.5
PRK12370	553	invasion protein regulator; Provisional	99.49
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.49
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.48
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.46
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.45
PRK12370	553	invasion protein regulator; Provisional	99.45
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.43
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.42
PF13041	50	PPR_2: PPR repeat family	99.4
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.38
PF13041	50	PPR_2: PPR repeat family	99.37
KOG1129	478	consensus TPR repeat-containing protein [General f	99.37
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.35
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.34
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.33
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.31
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.25
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.24
KOG1129	478	consensus TPR repeat-containing protein [General f	99.24
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.21
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.2
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.19
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.19
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.19
PRK11189	296	lipoprotein NlpI; Provisional	99.18
PRK11189	296	lipoprotein NlpI; Provisional	99.17
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.16
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.13
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.13
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.12
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.1
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.06
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.06
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.05
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.02
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.0
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.96
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.94
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.93
KOG1125	579	consensus TPR repeat-containing protein [General f	98.93
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.92
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.89
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.87
PLN02789	320	farnesyltranstransferase	98.86
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.85
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.84
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.84
PRK04841	903	transcriptional regulator MalT; Provisional	98.79
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.77
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.76
PF12854	34	PPR_1: PPR repeat	98.75
PF12854	34	PPR_1: PPR repeat	98.75
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.75
KOG1125	579	consensus TPR repeat-containing protein [General f	98.75
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.73
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.71
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.69
PLN02789	320	farnesyltranstransferase	98.69
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.68
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.65
PRK04841	903	transcriptional regulator MalT; Provisional	98.64
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.63
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.63
PRK15359	144	type III secretion system chaperone protein SscB;	98.6
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.59
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.57
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.57
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.55
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.55
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.54
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.53
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.53
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.52
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.51
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.5
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.5
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.46
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.45
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.45
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.43
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.42
PRK15359	144	type III secretion system chaperone protein SscB;	98.39
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.38
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.38
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.36
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.36
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.31
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.29
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	98.28
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.24
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.22
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.21
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.19
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.15
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.15
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.15
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.11
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	98.03
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.01
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	97.99
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.99
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	97.96
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.93
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.93
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.88
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.88
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.87
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.86
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	97.84
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.81
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.77
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.75
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.73
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.71
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.71
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.71
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.69
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.66
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.61
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.6
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.58
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.58
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.57
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.57
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.52
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.52
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.51
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.48
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.48
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.48
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	97.46
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.46
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.43
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.42
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.41
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.4
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.39
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.39
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.38
PF12688	120	TPR_5: Tetratrico peptide repeat	97.33
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.32
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.31
COG3898	531	Uncharacterized membrane-bound protein [Function u	97.31
PF12688	120	TPR_5: Tetratrico peptide repeat	97.29
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.28
KOG0553	304	consensus TPR repeat-containing protein [General f	97.27
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.22
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	97.21
KOG0553	304	consensus TPR repeat-containing protein [General f	97.2
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.19
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.16
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	97.15
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.13
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.08
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.04
PRK10803	263	tol-pal system protein YbgF; Provisional	97.03
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.01
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	96.98
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	96.96
PF13371	73	TPR_9: Tetratricopeptide repeat	96.92
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	96.85
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	96.85
PRK10803	263	tol-pal system protein YbgF; Provisional	96.84
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	96.73
smart00299	140	CLH Clathrin heavy chain repeat homology.	96.68
COG4700	251	Uncharacterized protein conserved in bacteria cont	96.65
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.63
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.6
KOG2041	1189	consensus WD40 repeat protein [General function pr	96.59
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.48
PRK15331	165	chaperone protein SicA; Provisional	96.46
KOG3941	406	consensus Intermediate in Toll signal transduction	96.44
KOG1941	518	consensus Acetylcholine receptor-associated protei	96.4
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	96.33
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	96.32
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	96.31
PF13371	73	TPR_9: Tetratricopeptide repeat	96.27
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.23
PRK11906	458	transcriptional regulator; Provisional	96.22
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	96.21
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	96.19
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.17
PRK15331	165	chaperone protein SicA; Provisional	96.16
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.14
COG3118	304	Thioredoxin domain-containing protein [Posttransla	95.92
KOG1585	308	consensus Protein required for fusion of vesicles	95.9
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	95.86
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	95.82
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	95.79
COG4105	254	ComL DNA uptake lipoprotein [General function pred	95.71
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	95.7
KOG3941	406	consensus Intermediate in Toll signal transduction	95.68
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	95.67
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	95.66
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	95.63
PF13428	44	TPR_14: Tetratricopeptide repeat	95.54
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	95.5
COG4105	254	ComL DNA uptake lipoprotein [General function pred	95.48
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	95.32
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	95.22
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	95.21
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	95.13
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	95.02
smart00299	140	CLH Clathrin heavy chain repeat homology.	94.97
PF13512	142	TPR_18: Tetratricopeptide repeat	94.93
COG3629	280	DnrI DNA-binding transcriptional activator of the	94.91
KOG4555	175	consensus TPR repeat-containing protein [Function	94.66
COG3898	531	Uncharacterized membrane-bound protein [Function u	94.56
KOG4555	175	consensus TPR repeat-containing protein [Function	94.44
KOG2610	491	consensus Uncharacterized conserved protein [Funct	94.43
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	94.37
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	94.32
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	94.32
COG3629	280	DnrI DNA-binding transcriptional activator of the	94.22
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	94.01
PF04097	613	Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9	93.97
PF13428	44	TPR_14: Tetratricopeptide repeat	93.97
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	93.95
PRK11906	458	transcriptional regulator; Provisional	93.88
KOG2610	491	consensus Uncharacterized conserved protein [Funct	93.88
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	93.56
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	93.4
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	93.26
PF13431	34	TPR_17: Tetratricopeptide repeat	93.22
COG0457	291	NrfG FOG: TPR repeat [General function prediction	92.99
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	92.99
PF13929	292	mRNA_stabil: mRNA stabilisation	92.89
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	92.69
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	92.67
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	92.55
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	92.45
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	92.25
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	92.08
KOG4570	418	consensus Uncharacterized conserved protein [Funct	92.04
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	91.97
PF07575	566	Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR0	91.87
KOG1550	552	consensus Extracellular protein SEL-1 and related	91.75
PF13512	142	TPR_18: Tetratricopeptide repeat	91.5
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	91.46
PF13431	34	TPR_17: Tetratricopeptide repeat	91.21
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	91.15
PF13929	292	mRNA_stabil: mRNA stabilisation	91.03
COG0457	291	NrfG FOG: TPR repeat [General function prediction	90.76
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	90.5
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	90.38
KOG2297	412	consensus Predicted translation factor, contains W	90.22
KOG1585	308	consensus Protein required for fusion of vesicles	90.08
KOG4570	418	consensus Uncharacterized conserved protein [Funct	90.01
COG1747	711	Uncharacterized N-terminal domain of the transcrip	89.95
KOG1941	518	consensus Acetylcholine receptor-associated protei	89.85
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	89.61
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	89.59
KOG2063	877	consensus Vacuolar assembly/sorting proteins VPS39	89.36
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	89.34
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	89.33
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	89.1
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	88.81
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	88.7
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	88.36
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	87.81
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	87.73
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	87.04
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	86.97
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	86.83
COG4455	273	ImpE Protein of avirulence locus involved in tempe	86.69
COG4455	273	ImpE Protein of avirulence locus involved in tempe	86.4
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	86.34
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	86.14
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	86.11
COG3947	361	Response regulator containing CheY-like receiver a	85.98
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	85.63
COG5159	421	RPN6 26S proteasome regulatory complex component [	85.37
KOG2297	412	consensus Predicted translation factor, contains W	85.32
KOG1258	577	consensus mRNA processing protein [RNA processing	85.27
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	85.05
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	84.92
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	84.6
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	84.1
PF13762	145	MNE1: Mitochondrial splicing apparatus component	83.28
KOG0991	333	consensus Replication factor C, subunit RFC2 [Repl	83.0
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	82.89
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	82.65
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	81.97
COG3947	361	Response regulator containing CheY-like receiver a	81.38
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	80.85
PF13762	145	MNE1: Mitochondrial splicing apparatus component	80.77
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	80.49
PF07163	309	Pex26: Pex26 protein; InterPro: IPR010797 This fam	80.48

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=6.1e-60  Score=473.86  Aligned_cols=410  Identities=12%  Similarity=0.176  Sum_probs=385.1

Q ss_pred             CCHHHHHHHHhcCC--CChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHH
Q 048269           37 LTHEFFLQICNNFP--LSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIA  114 (465)
Q Consensus        37 ~~~~~~~~~l~~~~--~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l  114 (465)
                      .+...+..++..+.  .+.+.|+++|+++ ....-+.++...++.++..|.+.|.+++|..+|+.|..   |+..+|+.+
T Consensus       368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M-~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~---pd~~Tyn~L  443 (1060)
T PLN03218        368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDM-EKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN---PTLSTFNML  443 (1060)
T ss_pred             CCchHHHHHHHHHHHCcCHHHHHHHHHHH-HhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC---CCHHHHHHH
Confidence            34445555555553  3788999999996 44333567888999999999999999999999999975   788999999


Q ss_pred             HHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh-cCCCCCHHhHHHHHHHHHhcCCH
Q 048269          115 LMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLS-EWIKPNEIAYGWLIKGYCDVGDL  193 (465)
Q Consensus       115 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~-~~~~~~~~~~~~li~~~~~~g~~  193 (465)
                      +.+|++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|. .|+.||..+|+.||.+|++.|++
T Consensus       444 L~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~  523 (1060)
T PLN03218        444 MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV  523 (1060)
T ss_pred             HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH
Confidence            99999999999999999999999999999999999999999999999999999999 89999999999999999999999


Q ss_pred             HHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCCCCcchHHHHHHHHHhcCChHHHHHHH
Q 048269          194 IEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRV--KRMDDLGLSTYRIVIDWMCKRGKISQAYTML  271 (465)
Q Consensus       194 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~  271 (465)
                      ++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|..  .++.| |..+|+++|.+|++.|++++|.++|
T Consensus       524 eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~vTynaLI~ay~k~G~ldeA~elf  602 (1060)
T PLN03218        524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHITVGALMKACANAGQVDRAKEVY  602 (1060)
T ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999986  57888 9999999999999999999999999


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC----CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 048269          272 EEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK----PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEP  347 (465)
Q Consensus       272 ~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p  347 (465)
                      ++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|..    ||..+|+.++.+|++.|++++|.++|++|.+.|+.|
T Consensus       603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p  682 (1060)
T PLN03218        603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL  682 (1060)
T ss_pred             HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence            9999999999999999999999999999999999999987    999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHhhcccC------------CCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 048269          348 TMHTYIMLLQGHLGKRG------------RKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLH  415 (465)
Q Consensus       348 ~~~~~~~ll~~~~~~~~------------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~  415 (465)
                      |..+|+.++.+|++.+.            ..++.||..+|+.||.+|++.|++++|.++|++|...|+.||..||+.++.
T Consensus       683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~  762 (1060)
T PLN03218        683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV  762 (1060)
T ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence            99999999999988777            578999999999999999999999999999999999999999999999999


Q ss_pred             HHhhccchHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 048269          416 YYSNEEGVVMFEEVGKKLREVGLADLADIFQRYGKK  451 (465)
Q Consensus       416 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~~~~~  451 (465)
                      +|++.|+++.|.+++++|.+.|+.|...+|..+-.+
T Consensus       763 a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIgl  798 (1060)
T PLN03218        763 ASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGL  798 (1060)
T ss_pred             HHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence            999999999999999999999999999988876543

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=9.6e-60  Score=472.43  Aligned_cols=417  Identities=15%  Similarity=0.206  Sum_probs=383.6

Q ss_pred             HHhhhhhCCCC-CCHHHHHHHHhcCC--CChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhh
Q 048269           26 LHSSLSSCNFN-LTHEFFLQICNNFP--LSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGR  102 (465)
Q Consensus        26 ~~~~l~~~~~~-~~~~~~~~~l~~~~--~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  102 (465)
                      +...+...+.. ++.-....++..+.  ...+.|+.+|+.+  ..    ||..+|+.++.+|++.|+++.|.++|+.|.+
T Consensus       392 Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M--~~----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~  465 (1060)
T PLN03218        392 LLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLI--RN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQE  465 (1060)
T ss_pred             HHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHc--CC----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHH
Confidence            55555555543 33333333343333  3678999999986  22    8999999999999999999999999999999


Q ss_pred             CCC-CChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh-cCCCCCHHhH
Q 048269          103 RRL-VNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLS-EWIKPNEIAY  180 (465)
Q Consensus       103 ~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~-~~~~~~~~~~  180 (465)
                      .|+ |+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|. .++.||..+|
T Consensus       466 ~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTY  545 (1060)
T PLN03218        466 AGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVF  545 (1060)
T ss_pred             cCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHH
Confidence            998 88999999999999999999999999999999999999999999999999999999999999999 9999999999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHH
Q 048269          181 GWLIKGYCDVGDLIEASKIWNLMTD--EGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWM  258 (465)
Q Consensus       181 ~~li~~~~~~g~~~~a~~~~~~m~~--~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~  258 (465)
                      +.||.+|++.|++++|.++|++|.+  .|+.||..+|+++|.+|++.|++++|.++|+.|.+.++.| +..+|+.+|.+|
T Consensus       546 nsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p-~~~tynsLI~ay  624 (1060)
T PLN03218        546 NALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKG-TPEVYTIAVNSC  624 (1060)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC-ChHHHHHHHHHH
Confidence            9999999999999999999999986  6899999999999999999999999999999999999999 999999999999


Q ss_pred             HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC----CCHhhHHHHHHHHHhcCCHHHHH
Q 048269          259 CKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK----PDISLYHGLIKGLLRLRRAREAT  334 (465)
Q Consensus       259 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~  334 (465)
                      ++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+    ||..+|+++|.+|++.|++++|.
T Consensus       625 ~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~  704 (1060)
T PLN03218        625 SQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKAL  704 (1060)
T ss_pred             HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999987    99999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHhhcccC------------CCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 048269          335 QVFREMIKRGCEPTMHTYIMLLQGHLGKRG------------RKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRG  402 (465)
Q Consensus       335 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~------------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~  402 (465)
                      ++|++|.+.|+.||..+|+.++.+|++.+.            ..++.||..+|+.++.+|++.|++++|.+++++|.+.|
T Consensus       705 ~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~G  784 (1060)
T PLN03218        705 ELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDG  784 (1060)
T ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence            999999999999999999999999988777            68999999999999999999999999999999999999


Q ss_pred             CCCCHhhHHHHHHHHhh----c-------------------cchHHHHHHHHHHHHcCCCCchhHHHHHH
Q 048269          403 VEVPRFDYNKFLHYYSN----E-------------------EGVVMFEEVGKKLREVGLADLADIFQRYG  449 (465)
Q Consensus       403 ~~p~~~~~~~ll~~~~~----~-------------------g~~~~a~~~~~~~~~~g~~~~~~~~~~~~  449 (465)
                      +.||..+|+.++..|.+    .                   +..+.|..++++|.+.|+.|...+|....
T Consensus       785 i~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL  854 (1060)
T PLN03218        785 IKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVL  854 (1060)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHH
Confidence            99999999999876542    1                   12367999999999999999999997664

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=1.4e-57  Score=454.13  Aligned_cols=413  Identities=15%  Similarity=0.187  Sum_probs=379.6

Q ss_pred             HHhhhhhC-CCCCCHHHHHHHHhcCCC--ChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhh
Q 048269           26 LHSSLSSC-NFNLTHEFFLQICNNFPL--SWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGR  102 (465)
Q Consensus        26 ~~~~l~~~-~~~~~~~~~~~~l~~~~~--~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  102 (465)
                      +...+... +..++..++..++..+..  +.+.+.+++..+  .+.|+.||..+||.++..|++.|++++|.++|++|.+
T Consensus       109 ~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m--~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~  186 (697)
T PLN03081        109 LFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHV--ESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE  186 (697)
T ss_pred             HHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH--HHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC
Confidence            44444443 467888888888887766  677899999884  6668999999999999999999999999999999975


Q ss_pred             CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh-cCCCCCHHhHH
Q 048269          103 RRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLS-EWIKPNEIAYG  181 (465)
Q Consensus       103 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~-~~~~~~~~~~~  181 (465)
                         ++..+|+.++.+|++.|++++|+++|++|.+.|+.|+..+|+.++.+|++.|..+.+.+++..+. .|+.||..+|+
T Consensus       187 ---~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n  263 (697)
T PLN03081        187 ---RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSC  263 (697)
T ss_pred             ---CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHH
Confidence               46668999999999999999999999999999999999999999999999999999999999988 88999999999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhc
Q 048269          182 WLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKR  261 (465)
Q Consensus       182 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~  261 (465)
                      .||.+|++.|++++|.++|+.|.+    +|..+|+.++.+|++.|++++|.++|++|.+.|+.| |..||+.++.+|++.
T Consensus       264 ~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p-d~~t~~~ll~a~~~~  338 (697)
T PLN03081        264 ALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI-DQFTFSIMIRIFSRL  338 (697)
T ss_pred             HHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhc
Confidence            999999999999999999999964    699999999999999999999999999999999999 999999999999999


Q ss_pred             CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048269          262 GKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEKPDISLYHGLIKGLLRLRRAREATQVFREMI  341 (465)
Q Consensus       262 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  341 (465)
                      |+++.|.+++..|.+.|+.||..+|+.|+.+|+++|++++|.++|++|.++|..+||+||.+|++.|+.++|+++|++|.
T Consensus       339 g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~  418 (697)
T PLN03081        339 ALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMI  418 (697)
T ss_pred             cchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCCCCHHHHHHHHHHhhcccC-------------CCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh
Q 048269          342 KRGCEPTMHTYIMLLQGHLGKRG-------------RKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRF  408 (465)
Q Consensus       342 ~~~~~p~~~~~~~ll~~~~~~~~-------------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~  408 (465)
                      +.|+.||..||+.++.+|+..+.             ..++.|+..+|++++.+|++.|++++|.+++++|   ++.|+..
T Consensus       419 ~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~  495 (697)
T PLN03081        419 AEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVN  495 (697)
T ss_pred             HhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHH
Confidence            99999999999999999987665             4689999999999999999999999999999877   4889999


Q ss_pred             hHHHHHHHHhhccchHHHHHHHHHHHHcC------CCCchhHHHHHHHH
Q 048269          409 DYNKFLHYYSNEEGVVMFEEVGKKLREVG------LADLADIFQRYGKK  451 (465)
Q Consensus       409 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~g------~~~~~~~~~~~~~~  451 (465)
                      +|+.|+.+|...|+++.+..+++++.+.+      |..+.++|...|++
T Consensus       496 ~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~  544 (697)
T PLN03081        496 MWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQ  544 (697)
T ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCH
Confidence            99999999999999999999999998764      44555666655543

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=6.5e-57  Score=459.70  Aligned_cols=422  Identities=16%  Similarity=0.117  Sum_probs=390.4

Q ss_pred             HHhhhhhCCCCCCHHHHHHHHhcCCC--ChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 048269           26 LHSSLSSCNFNLTHEFFLQICNNFPL--SWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRR  103 (465)
Q Consensus        26 ~~~~l~~~~~~~~~~~~~~~l~~~~~--~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  103 (465)
                      +...+...|..|+..++..+++.+..  +.+.+.+++..+  ...|+.||..+||.++.+|++.|++++|.++|++|.+.
T Consensus       174 ~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~--~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~  251 (857)
T PLN03077        174 LYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHV--VRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRR  251 (857)
T ss_pred             HHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHH--HHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCC
Confidence            55556667888898889888888776  567788888885  56689999999999999999999999999999999764


Q ss_pred             CCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh-cCCCCCHHhHHH
Q 048269          104 RLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLS-EWIKPNEIAYGW  182 (465)
Q Consensus       104 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~-~~~~~~~~~~~~  182 (465)
                         +..+|+.+|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|+.+.+.+++..|. .|+.||..+|+.
T Consensus       252 ---d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~  328 (857)
T PLN03077        252 ---DCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNS  328 (857)
T ss_pred             ---CcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHH
Confidence               5568999999999999999999999999999999999999999999999999999999999999 999999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcC
Q 048269          183 LIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRG  262 (465)
Q Consensus       183 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~  262 (465)
                      ||.+|++.|++++|.++|++|.    .||..+|+.+|.+|++.|++++|.++|++|.+.|+.| |..||+.++.+|++.|
T Consensus       329 Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~P-d~~t~~~ll~a~~~~g  403 (857)
T PLN03077        329 LIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSP-DEITIASVLSACACLG  403 (857)
T ss_pred             HHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC-CceeHHHHHHHHhccc
Confidence            9999999999999999999996    4789999999999999999999999999999999999 9999999999999999


Q ss_pred             ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048269          263 KISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEKPDISLYHGLIKGLLRLRRAREATQVFREMIK  342 (465)
Q Consensus       263 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  342 (465)
                      +++.|.++++.|.+.|+.|+..+|+.|+.+|++.|++++|.++|++|.++|..+|+.+|.+|++.|+.++|+++|++|..
T Consensus       404 ~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~  483 (857)
T PLN03077        404 DLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL  483 (857)
T ss_pred             hHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999986


Q ss_pred             cCCCCCHHHHHHHHHHhhcccC------------C------------------------------CCCCCchHHHHHHHH
Q 048269          343 RGCEPTMHTYIMLLQGHLGKRG------------R------------------------------KGPDPLVNFDTIFVG  380 (465)
Q Consensus       343 ~~~~p~~~~~~~ll~~~~~~~~------------~------------------------------~~~~~~~~~~~~li~  380 (465)
                       ++.||..||..++.+|++.+.            +                              ....+|..+||+||.
T Consensus       484 -~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~  562 (857)
T PLN03077        484 -TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLT  562 (857)
T ss_pred             -CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHH
Confidence             699999999999998876543            1                              112789999999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhccchHHHHHHHHHHH-HcCCCCchhHHHHHHHHHhHHhhh
Q 048269          381 GLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNEEGVVMFEEVGKKLR-EVGLADLADIFQRYGKKMATRERR  458 (465)
Q Consensus       381 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~  458 (465)
                      +|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|.+++|.++++.|. +.|+.|...+|..........++-
T Consensus       563 ~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~  641 (857)
T PLN03077        563 GYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKL  641 (857)
T ss_pred             HHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCH
Confidence            999999999999999999999999999999999999999999999999999999 679999988888777766665543

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=1.4e-55  Score=449.92  Aligned_cols=424  Identities=15%  Similarity=0.205  Sum_probs=342.4

Q ss_pred             HHhhhhhCCCCCCHHHHHHHHhcCCC--ChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 048269           26 LHSSLSSCNFNLTHEFFLQICNNFPL--SWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRR  103 (465)
Q Consensus        26 ~~~~l~~~~~~~~~~~~~~~l~~~~~--~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  103 (465)
                      +...+.+.|..++...++.++..+.+  +.+.|..+|+.+  .    .||..+||.+|.+|++.|++++|+++|++|.+.
T Consensus       209 ~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m--~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~  282 (857)
T PLN03077        209 VHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRM--P----RRDCISWNAMISGYFENGECLEGLELFFTMREL  282 (857)
T ss_pred             HHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcC--C----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence            55566667778888888888877665  778899999886  2    368888888888888888888888888888888


Q ss_pred             CC-CChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHH
Q 048269          104 RL-VNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGW  182 (465)
Q Consensus       104 ~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~  182 (465)
                      |+ |+..||+.++.+|++.|+.+.|.+++..|.+.|+.||..+||.++.+|++.|++++|.++|++|.   .||..+|++
T Consensus       283 g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~d~~s~n~  359 (857)
T PLN03077        283 SVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME---TKDAVSWTA  359 (857)
T ss_pred             CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCeeeHHH
Confidence            87 78888888888888888888888888888888888888888888888888888888888888886   567778888


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcC
Q 048269          183 LIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRG  262 (465)
Q Consensus       183 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~  262 (465)
                      +|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.|.+.|..| +..+|+.|+.+|++.|
T Consensus       360 li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~-~~~~~n~Li~~y~k~g  438 (857)
T PLN03077        360 MISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLIS-YVVVANALIEMYSKCK  438 (857)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCc-chHHHHHHHHHHHHcC
Confidence            888888888888888888888777777777777777777766666666666666666666655 5555555555555555


Q ss_pred             ChHHHHHHHH-------------------------------HHHHCCCCCCHHHH-------------------------
Q 048269          263 KISQAYTMLE-------------------------------EMFKRGIEADNLTL-------------------------  286 (465)
Q Consensus       263 ~~~~a~~~~~-------------------------------~m~~~~~~~~~~~~-------------------------  286 (465)
                      ++++|.++|+                               +|.. ++.||..||                         
T Consensus       439 ~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~  517 (857)
T PLN03077        439 CIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLR  517 (857)
T ss_pred             CHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHH
Confidence            5555554444                               4432 355666555                         


Q ss_pred             ----------HHHHHHHHhcCCHHHHHHHHHHhcCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 048269          287 ----------SSIIYGLLARGRLREAYKVVEEIEKPDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLL  356 (465)
Q Consensus       287 ----------~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll  356 (465)
                                ++|+.+|+++|++++|.++|+.+ .+|..+||+||.+|++.|+.++|+++|++|.+.|+.||..||+.++
T Consensus       518 ~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll  596 (857)
T PLN03077        518 TGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLL  596 (857)
T ss_pred             hCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHH
Confidence                      45556778888888999999888 8999999999999999999999999999999999999999999999


Q ss_pred             HHhhcccC-------------CCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhccch
Q 048269          357 QGHLGKRG-------------RKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNEEGV  423 (465)
Q Consensus       357 ~~~~~~~~-------------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~  423 (465)
                      .+|...+.             ..++.|+..+|++++.+|++.|++++|.+++++|.   +.||..+|++|+.+|...|+.
T Consensus       597 ~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~  673 (857)
T PLN03077        597 CACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHV  673 (857)
T ss_pred             HHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCCh
Confidence            99976655             57899999999999999999999999999999994   799999999999999999999


Q ss_pred             HHHHHHHHHHHHcC------CCCchhHHHHHHH---HHhHHhhhhhccCC
Q 048269          424 VMFEEVGKKLREVG------LADLADIFQRYGK---KMATRERRRNRAIE  464 (465)
Q Consensus       424 ~~a~~~~~~~~~~g------~~~~~~~~~~~~~---~~~~~~~~~~~~~~  464 (465)
                      +.++...+++.+..      +..++++|...|+   ..+.|+.+++..++
T Consensus       674 e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~  723 (857)
T PLN03077        674 ELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLT  723 (857)
T ss_pred             HHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Confidence            99999999998874      6667788876664   55666666655443

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=3.2e-54  Score=430.00  Aligned_cols=399  Identities=14%  Similarity=0.147  Sum_probs=378.0

Q ss_pred             hHHhhhhhCCCCCCHHHHHHHHhcCCC--ChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhh
Q 048269           25 RLHSSLSSCNFNLTHEFFLQICNNFPL--SWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGR  102 (465)
Q Consensus        25 ~~~~~l~~~~~~~~~~~~~~~l~~~~~--~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  102 (465)
                      .+...+...|..++...++.++..+..  +.+.|.++|+.+  .    .||..+||.++.+|++.|++++|+++|++|.+
T Consensus       144 ~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m--~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~  217 (697)
T PLN03081        144 AVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEM--P----ERNLASWGTIIGGLVDAGNYREAFALFREMWE  217 (697)
T ss_pred             HHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcC--C----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            477777888999999999999988776  789999999996  2    37999999999999999999999999999999


Q ss_pred             CCC-CChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHH
Q 048269          103 RRL-VNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYG  181 (465)
Q Consensus       103 ~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~  181 (465)
                      .|+ |+..+|+.++.+|++.|..+.+.+++..+.+.|+.||..+||+|+.+|++.|++++|.++|++|.   ++|..+|+
T Consensus       218 ~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~~~vt~n  294 (697)
T PLN03081        218 DGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP---EKTTVAWN  294 (697)
T ss_pred             hCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC---CCChhHHH
Confidence            998 88999999999999999999999999999999999999999999999999999999999999997   67999999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhc
Q 048269          182 WLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKR  261 (465)
Q Consensus       182 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~  261 (465)
                      +||.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.| +..+|++|+.+|++.
T Consensus       295 ~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~-d~~~~~~Li~~y~k~  373 (697)
T PLN03081        295 SMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPL-DIVANTALVDLYSKW  373 (697)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCC-CeeehHHHHHHHHHC
Confidence            9999999999999999999999999999999999999999999999999999999999999999 999999999999999


Q ss_pred             CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC----CCHhhHHHHHHHHHhcCCHHHHHHHH
Q 048269          262 GKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK----PDISLYHGLIKGLLRLRRAREATQVF  337 (465)
Q Consensus       262 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~  337 (465)
                      |++++|.++|++|.+    ||..+|+.+|.+|++.|+.++|.++|++|.+    ||..||++++.+|++.|.+++|.++|
T Consensus       374 G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f  449 (697)
T PLN03081        374 GRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIF  449 (697)
T ss_pred             CCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHH
Confidence            999999999999964    6899999999999999999999999999987    99999999999999999999999999


Q ss_pred             HHHHH-cCCCCCHHHHHHHHHHhhcccC---------CCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-
Q 048269          338 REMIK-RGCEPTMHTYIMLLQGHLGKRG---------RKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVP-  406 (465)
Q Consensus       338 ~~m~~-~~~~p~~~~~~~ll~~~~~~~~---------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-  406 (465)
                      +.|.+ .|+.|+..+|+.++..+.+.+.         ..++.|+..+|++|+.+|...|+++.|..+++++.+  +.|+ 
T Consensus       450 ~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~  527 (697)
T PLN03081        450 QSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEK  527 (697)
T ss_pred             HHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCC
Confidence            99986 5999999999999999987776         677899999999999999999999999999999974  5675 


Q ss_pred             HhhHHHHHHHHhhccchHHHHHHHHHHHHcCCC
Q 048269          407 RFDYNKFLHYYSNEEGVVMFEEVGKKLREVGLA  439 (465)
Q Consensus       407 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~  439 (465)
                      ..+|..|++.|.+.|++++|.+++++|.+.|+.
T Consensus       528 ~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~  560 (697)
T PLN03081        528 LNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLS  560 (697)
T ss_pred             CcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCc
Confidence            569999999999999999999999999999853

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.97  E-value=3.1e-25  Score=231.36  Aligned_cols=398  Identities=10%  Similarity=-0.018  Sum_probs=291.2

Q ss_pred             CCCChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHH
Q 048269           49 FPLSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMV  128 (465)
Q Consensus        49 ~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  128 (465)
                      ..++++.|...|+.++...++   +...+..+...+...|++++|.+.++.+.+.++.+..++..+...+.+.|+.++|.
T Consensus       477 ~~~~~~~A~~~~~~a~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  553 (899)
T TIGR02917       477 GKGDLAKAREAFEKALSIEPD---FFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAV  553 (899)
T ss_pred             hCCCHHHHHHHHHHHHhhCCC---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHH
Confidence            334778888888887544443   66777778888888888888888888888777767777888888888888888888


Q ss_pred             HHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 048269          129 NFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGF  208 (465)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~  208 (465)
                      ..++.+.+.+ +.+...+..++..+...|++++|..+++++....+.+..+|..+..++...|++++|...|+.+.+.. 
T Consensus       554 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-  631 (899)
T TIGR02917       554 AWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-  631 (899)
T ss_pred             HHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence            8888887654 55666777788888888888888888888875556777788888888888888888888888887653 


Q ss_pred             CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 048269          209 EPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSS  288 (465)
Q Consensus       209 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~  288 (465)
                      +.+...+..+..++.+.|++++|.++|+.+...  .|.+..++..++..+...|++++|.++++.+.+.+ +.+...+..
T Consensus       632 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~  708 (899)
T TIGR02917       632 PDSALALLLLADAYAVMKNYAKAITSLKRALEL--KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFEL  708 (899)
T ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHH
Confidence            335667777888888888888888888887754  45467777888888888888888888888877764 345666777


Q ss_pred             HHHHHHhcCCHHHHHHHHHHhcC--CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccC--
Q 048269          289 IIYGLLARGRLREAYKVVEEIEK--PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRG--  364 (465)
Q Consensus       289 li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~--  364 (465)
                      +...+...|++++|...|+.+..  |+..++..+..++.+.|++++|.+.++++.+.. +.+...+..+...+...+.  
T Consensus       709 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~  787 (899)
T TIGR02917       709 EGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYD  787 (899)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence            77778888888888888887766  666667777777888888888888888777642 3345555555555544444  


Q ss_pred             ---------CCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHhhccchHHHHHHHHHHH
Q 048269          365 ---------RKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEV-PRFDYNKFLHYYSNEEGVVMFEEVGKKLR  434 (465)
Q Consensus       365 ---------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~  434 (465)
                               ....+.++..++.+...+...|+ ++|+.+++++.+.  .| +..++..+...+...|++++|..+++++.
T Consensus       788 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~  864 (899)
T TIGR02917       788 KAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKL--APNIPAILDTLGWLLVEKGEADRALPLLRKAV  864 (899)
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence                     22334566777778888888888 7788888887763  34 34466777777778888888888888888


Q ss_pred             HcCCCCchhHHHHHHHHHhHHhhhh
Q 048269          435 EVGLADLADIFQRYGKKMATRERRR  459 (465)
Q Consensus       435 ~~g~~~~~~~~~~~~~~~~~~~~~~  459 (465)
                      +.+.. ...++..++......++..
T Consensus       865 ~~~~~-~~~~~~~l~~~~~~~g~~~  888 (899)
T TIGR02917       865 NIAPE-AAAIRYHLALALLATGRKA  888 (899)
T ss_pred             hhCCC-ChHHHHHHHHHHHHcCCHH
Confidence            77644 6667766776655554443

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.96  E-value=2e-24  Score=225.38  Aligned_cols=374  Identities=14%  Similarity=0.030  Sum_probs=260.4

Q ss_pred             CChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 048269           51 LSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNF  130 (465)
Q Consensus        51 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  130 (465)
                      ++++.|+.+++.+....   +.++.+++.+...+...|++++|.+.|+++.+.++.+...+..+...+...|++++|.+.
T Consensus       445 ~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  521 (899)
T TIGR02917       445 GQFDKALAAAKKLEKKQ---PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQR  521 (899)
T ss_pred             CCHHHHHHHHHHHHHhC---CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence            36677777777763322   336677777777777777777777777777776666666677777777777777777777


Q ss_pred             HHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 048269          131 FHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEP  210 (465)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~  210 (465)
                      |+.+.+.+ +.+..++..+...+.+.|+.++|..+++++....+.+...+..+...|...|++++|..+++.+.+.. +.
T Consensus       522 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~  599 (899)
T TIGR02917       522 FEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PD  599 (899)
T ss_pred             HHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CC
Confidence            77777654 45666777777777777777777777777764445566677777777777777777777777776543 44


Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048269          211 SIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSII  290 (465)
Q Consensus       211 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li  290 (465)
                      +..+|..+..++.+.|++++|.+.|+.+.+.  .|.+...+..+..++...|++++|..+++++.+.. +.+..++..+.
T Consensus       600 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~  676 (899)
T TIGR02917       600 SPEAWLMLGRAQLAAGDLNKAVSSFKKLLAL--QPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLA  676 (899)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence            5667777777777777777777777777654  34356667777777777777777777777777653 23466777777


Q ss_pred             HHHHhcCCHHHHHHHHHHhcC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccC---
Q 048269          291 YGLLARGRLREAYKVVEEIEK---PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRG---  364 (465)
Q Consensus       291 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~---  364 (465)
                      ..+...|++++|..+++.+..   .+...+..+...+...|++++|.+.|+.+...  .|+..++..+...+...+.   
T Consensus       677 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~  754 (899)
T TIGR02917       677 QLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAE  754 (899)
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHH
Confidence            777777777777777777766   45556666777777777777777777777754  3444555555555544443   


Q ss_pred             --------CCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhccchHHHHHHHHHHHHc
Q 048269          365 --------RKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNEEGVVMFEEVGKKLREV  436 (465)
Q Consensus       365 --------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  436 (465)
                              ....+.+...+..+...|...|++++|.++|+++.+.. +.+..++..+...+.+.|+ .+|..++++..+.
T Consensus       755 A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~  832 (899)
T TIGR02917       755 AVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKL  832 (899)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence                    22334456677777777777777777777777777642 3345577777777777777 6677777777765

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.93  E-value=1.6e-22  Score=189.81  Aligned_cols=301  Identities=15%  Similarity=0.093  Sum_probs=245.2

Q ss_pred             HHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC---HHHHHHHHHHHHcCC
Q 048269           81 VDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYS---LEMLNKVVKTLCQRK  157 (465)
Q Consensus        81 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~  157 (465)
                      ...+...|++++|+..|+++.+.++.+..++..+...+...|++++|..+++.+...+..++   ...+..+...|.+.|
T Consensus        42 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g  121 (389)
T PRK11788         42 GLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG  121 (389)
T ss_pred             HHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence            44567788999999999999988877778888899999999999999999998887532221   246778888999999


Q ss_pred             CHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCc----HHHHHHHHHHHHhcCCHHHHHH
Q 048269          158 LVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPS----IDVVDKMIETFFKINKDDEAMK  233 (465)
Q Consensus       158 ~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~  233 (465)
                      ++++|..+|+++....+.+..++..++..+.+.|++++|.+.++.+.+.+..+.    ...+..+...+.+.|++++|.+
T Consensus       122 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  201 (389)
T PRK11788        122 LLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA  201 (389)
T ss_pred             CHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence            999999999998854566788899999999999999999999999987653322    2245667778889999999999


Q ss_pred             HHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC--
Q 048269          234 VFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK--  311 (465)
Q Consensus       234 ~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--  311 (465)
                      .|+++.+.  .|.+...+..+...+.+.|++++|.++++++...+......++..++.+|...|++++|...++++.+  
T Consensus       202 ~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~  279 (389)
T PRK11788        202 LLKKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY  279 (389)
T ss_pred             HHHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            99998865  34356678888899999999999999999998764333356678888999999999999999999877  


Q ss_pred             CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHh---cCCH
Q 048269          312 PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVK---AGKS  388 (465)
Q Consensus       312 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~  388 (465)
                      |+...+..+...+.+.|++++|..+++++.+.  .|+..++..++..+                       ..   .|+.
T Consensus       280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~-----------------------~~~~~~g~~  334 (389)
T PRK11788        280 PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYH-----------------------LAEAEEGRA  334 (389)
T ss_pred             CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHh-----------------------hhccCCccc
Confidence            77777788888999999999999999998865  68888887776665                       32   5688


Q ss_pred             HHHHHHHHHHHhCCCCCCHh
Q 048269          389 LDAAKYVERVMNRGVEVPRF  408 (465)
Q Consensus       389 ~~A~~~~~~m~~~~~~p~~~  408 (465)
                      +++..++++|.+.++.|++.
T Consensus       335 ~~a~~~~~~~~~~~~~~~p~  354 (389)
T PRK11788        335 KESLLLLRDLVGEQLKRKPR  354 (389)
T ss_pred             hhHHHHHHHHHHHHHhCCCC
Confidence            99999999999877777665

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.92  E-value=8.3e-22  Score=185.01  Aligned_cols=315  Identities=12%  Similarity=0.079  Sum_probs=262.3

Q ss_pred             hhhhhCCCCCCHHHHHHHHhcCCCChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC
Q 048269           28 SSLSSCNFNLTHEFFLQICNNFPLSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVN  107 (465)
Q Consensus        28 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  107 (465)
                      ...++....++...+..+.....++++.|+..|..++...+.   +..++..+...+.+.|++++|..+++.+......+
T Consensus        26 ~~~~~~~~~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~  102 (389)
T PRK11788         26 QDQQKESNRLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPE---TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLT  102 (389)
T ss_pred             hhhhhhhhhccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcc---cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCC
Confidence            345556667777778888777777899999999998555443   77899999999999999999999999998764322


Q ss_pred             ----hHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCC-----HH
Q 048269          108 ----DKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPN-----EI  178 (465)
Q Consensus       108 ----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-----~~  178 (465)
                          ..++..++..+.+.|++++|+.+|+.+.+.. +.+..+++.++.++.+.|++++|.+.++.+....+.+     ..
T Consensus       103 ~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  181 (389)
T PRK11788        103 REQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAH  181 (389)
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHH
Confidence                2467888999999999999999999998764 5678889999999999999999999999998322221     22


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHH
Q 048269          179 AYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWM  258 (465)
Q Consensus       179 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~  258 (465)
                      .+..+...+.+.|++++|...|+++.+.. +.+...+..+...+.+.|++++|.+.|+++...+... ...+++.++.+|
T Consensus       182 ~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~~~l~~~~  259 (389)
T PRK11788        182 FYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEY-LSEVLPKLMECY  259 (389)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh-HHHHHHHHHHHH
Confidence            45677888899999999999999998764 3356688889999999999999999999998763222 245788999999


Q ss_pred             HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC--CCHhhHHHHHHHHHh---cCCHHHH
Q 048269          259 CKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK--PDISLYHGLIKGLLR---LRRAREA  333 (465)
Q Consensus       259 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~---~~~~~~a  333 (465)
                      ...|++++|...++++.+.  .|+...+..+...+.+.|++++|..+++++.+  |+...++.++..+..   .|+.+++
T Consensus       260 ~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a  337 (389)
T PRK11788        260 QALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKES  337 (389)
T ss_pred             HHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhH
Confidence            9999999999999999886  45666778899999999999999999998877  899899988887775   5689999


Q ss_pred             HHHHHHHHHcCCCCCHH
Q 048269          334 TQVFREMIKRGCEPTMH  350 (465)
Q Consensus       334 ~~~~~~m~~~~~~p~~~  350 (465)
                      +.++++|.+.++.|++.
T Consensus       338 ~~~~~~~~~~~~~~~p~  354 (389)
T PRK11788        338 LLLLRDLVGEQLKRKPR  354 (389)
T ss_pred             HHHHHHHHHHHHhCCCC
Confidence            99999999988777765

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.89  E-value=1.1e-18  Score=171.87  Aligned_cols=330  Identities=11%  Similarity=0.058  Sum_probs=172.6

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHc
Q 048269           76 TFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQ  155 (465)
Q Consensus        76 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~  155 (465)
                      -..-++..+.+.|++++|..+++......+-+...+..++.+....|++++|+..|+.+.+.. +.+...+..+...+..
T Consensus        44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~  122 (656)
T PRK15174         44 NIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLK  122 (656)
T ss_pred             CHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence            334445555566666666666666655555444555555555555666666666666665543 3344555555556666


Q ss_pred             CCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 048269          156 RKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVF  235 (465)
Q Consensus       156 ~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~  235 (465)
                      .|++++|+..+++...-.+.+...+..+...+...|++++|...++.+...... +...+..+ ..+...|++++|.+.+
T Consensus       123 ~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~  200 (656)
T PRK15174        123 SKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLA  200 (656)
T ss_pred             cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHH
Confidence            666666666666655333444555555666666666666666666555443211 12222222 2345556666666666


Q ss_pred             HHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHhcC
Q 048269          236 QMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLRE----AYKVVEEIEK  311 (465)
Q Consensus       236 ~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~----a~~~~~~~~~  311 (465)
                      +.+......+ +...+..+..++...|++++|...++++.+... .+...+..+...+...|++++    |...|++...
T Consensus       201 ~~~l~~~~~~-~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~  278 (656)
T PRK15174        201 RALLPFFALE-RQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ  278 (656)
T ss_pred             HHHHhcCCCc-chhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence            6554432111 223333344555566666666666666555432 234455555556666666553    5555555554


Q ss_pred             ---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcCCH
Q 048269          312 ---PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKS  388 (465)
Q Consensus       312 ---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~  388 (465)
                         .+...+..+...+...|++++|...+++..+.  .|+.....                      ..+...|.+.|++
T Consensus       279 l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~----------------------~~La~~l~~~G~~  334 (656)
T PRK15174        279 FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVR----------------------AMYARALRQVGQY  334 (656)
T ss_pred             hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHH----------------------HHHHHHHHHCCCH
Confidence               23345555555566666666666666665543  33322211                      1123334556666


Q ss_pred             HHHHHHHHHHHhCCCCCCHhh-HHHHHHHHhhccchHHHHHHHHHHHHc
Q 048269          389 LDAAKYVERVMNRGVEVPRFD-YNKFLHYYSNEEGVVMFEEVGKKLREV  436 (465)
Q Consensus       389 ~~A~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~  436 (465)
                      ++|++.++++...  .|+... +..+..++...|+.++|...+++..+.
T Consensus       335 ~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~  381 (656)
T PRK15174        335 TAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA  381 (656)
T ss_pred             HHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            6666666665542  343322 222344455556666666666665555

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.88  E-value=8.7e-20  Score=164.80  Aligned_cols=353  Identities=11%  Similarity=0.058  Sum_probs=199.7

Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHH-HHHH
Q 048269           73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLN-KVVK  151 (465)
Q Consensus        73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~ll~  151 (465)
                      -.++|..+..++-..|++++|+..++.+.+..+.....|..+..++...|+.+.|.+.|.+..+.  .|+..... .+..
T Consensus       115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgn  192 (966)
T KOG4626|consen  115 GAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGN  192 (966)
T ss_pred             HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhH
Confidence            45566666666666666666666666666665555556666666666666666666666665553  34433322 2333


Q ss_pred             HHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCc-HHHHHHHHHHHHhcCCHHH
Q 048269          152 TLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPS-IDVVDKMIETFFKINKDDE  230 (465)
Q Consensus       152 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~  230 (465)
                      .+...|++++|...|.+.....+--.+.|+.|...+-..|+...|++.|++..+.  .|+ ...|-.|...|...+.++.
T Consensus       193 Llka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~  270 (966)
T KOG4626|consen  193 LLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDR  270 (966)
T ss_pred             HHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchH
Confidence            3344555666655555554322333455555555555556666666555555543  232 3445555555555555555


Q ss_pred             HHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 048269          231 AMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEAD-NLTLSSIIYGLLARGRLREAYKVVEEI  309 (465)
Q Consensus       231 A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~  309 (465)
                      |...|......  .|.....+..+...|...|+++-|+..|++..+.  .|+ +..|+.|..++...|++.+|...+.+.
T Consensus       271 Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnka  346 (966)
T KOG4626|consen  271 AVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKA  346 (966)
T ss_pred             HHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHH
Confidence            55555554432  3334444555555555555555555555555443  222 344555555555555555555555555


Q ss_pred             cC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccC-----------CCCCCCc-hHH
Q 048269          310 EK---PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRG-----------RKGPDPL-VNF  374 (465)
Q Consensus       310 ~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-----------~~~~~~~-~~~  374 (465)
                      ..   ......+.|...|...|.+++|..+|....  .+.|.-..-..-+....+..|           ...+.|+ ...
T Consensus       347 L~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al--~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda  424 (966)
T KOG4626|consen  347 LRLCPNHADAMNNLGNIYREQGKIEEATRLYLKAL--EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADA  424 (966)
T ss_pred             HHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHH--hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHH
Confidence            44   223344455555555555555555555444  233432222222222222222           2233333 346


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh-hHHHHHHHHhhccchHHHHHHHHHHHHcC
Q 048269          375 DTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRF-DYNKFLHYYSNEEGVVMFEEVGKKLREVG  437 (465)
Q Consensus       375 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~g  437 (465)
                      |+.+...|-..|+.+.|++.+.+.+.  +.|.-. ..+.|...|..+|+..+|..-++..++..
T Consensus       425 ~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk  486 (966)
T KOG4626|consen  425 LSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK  486 (966)
T ss_pred             HHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence            77788888999999999999999886  567644 78888999999999999999999988774

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.88  E-value=7.3e-18  Score=166.16  Aligned_cols=319  Identities=10%  Similarity=0.025  Sum_probs=257.2

Q ss_pred             CChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 048269           51 LSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNF  130 (465)
Q Consensus        51 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  130 (465)
                      ++++.|+.++..++...+.   +...+..++.+....|++++|...++++.+..+.+...+..+...+.+.|++++|+..
T Consensus        56 g~~~~A~~l~~~~l~~~p~---~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~  132 (656)
T PRK15174         56 DETDVGLTLLSDRVLTAKN---GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADL  132 (656)
T ss_pred             CCcchhHHHhHHHHHhCCC---chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHH
Confidence            3788899999887555554   6667777778888899999999999999999888888899999999999999999999


Q ss_pred             HHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 048269          131 FHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEP  210 (465)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~  210 (465)
                      |+.+.+.. +.+...+..+..++...|+.++|...++.+....+.+...+..+ ..+...|++++|...++.+.+..-.+
T Consensus       133 l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~  210 (656)
T PRK15174        133 AEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALE  210 (656)
T ss_pred             HHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence            99998864 55677888899999999999999999998863334444455444 34788899999999999987764334


Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHH----HHHHHHHHHHCCCCCCHHHH
Q 048269          211 SIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQ----AYTMLEEMFKRGIEADNLTL  286 (465)
Q Consensus       211 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~----a~~~~~~m~~~~~~~~~~~~  286 (465)
                      +...+..+..++.+.|++++|.+.++.....  .|.+...+..+...+...|++++    |...|++..+... .+...+
T Consensus       211 ~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P-~~~~a~  287 (656)
T PRK15174        211 RQESAGLAVDTLCAVGKYQEAIQTGESALAR--GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNS-DNVRIV  287 (656)
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC-CCHHHH
Confidence            4555566678888999999999999999876  45577888889999999999985    7999999887643 367788


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHhcC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccc
Q 048269          287 SSIIYGLLARGRLREAYKVVEEIEK---PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKR  363 (465)
Q Consensus       287 ~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~  363 (465)
                      ..+...+...|++++|...+++...   .+...+..+..++.+.|++++|...|+++.+.  .|+...+...        
T Consensus       288 ~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~--------  357 (656)
T PRK15174        288 TLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRY--------  357 (656)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHH--------
Confidence            8999999999999999999999887   44556777888899999999999999998864  4554332221        


Q ss_pred             CCCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048269          364 GRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNR  401 (465)
Q Consensus       364 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  401 (465)
                                    +..++...|++++|...|++..+.
T Consensus       358 --------------~a~al~~~G~~deA~~~l~~al~~  381 (656)
T PRK15174        358 --------------AAAALLQAGKTSEAESVFEHYIQA  381 (656)
T ss_pred             --------------HHHHHHHCCCHHHHHHHHHHHHHh
Confidence                          223458899999999999998873

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.88  E-value=1.3e-17  Score=164.96  Aligned_cols=358  Identities=11%  Similarity=0.001  Sum_probs=273.3

Q ss_pred             CChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 048269           51 LSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNF  130 (465)
Q Consensus        51 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  130 (465)
                      .+++.|+..|+.++..    .|+...|..+..+|.+.|++++|++.++...+.++.+..++..+..++...|++++|+..
T Consensus       141 ~~~~~Ai~~y~~al~~----~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~  216 (615)
T TIGR00990       141 KDFNKAIKLYSKAIEC----KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLD  216 (615)
T ss_pred             CCHHHHHHHHHHHHhc----CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            3789999999998543    357788999999999999999999999999998887888999999999999999999876


Q ss_pred             HHHhhhCCCC-----------------------------CCHHHHHHH------------------------------HH
Q 048269          131 FHIMNDCGCE-----------------------------YSLEMLNKV------------------------------VK  151 (465)
Q Consensus       131 ~~~~~~~~~~-----------------------------~~~~~~~~l------------------------------l~  151 (465)
                      |......+-.                             ++...+..+                              +.
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (615)
T TIGR00990       217 LTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQ  296 (615)
T ss_pred             HHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHH
Confidence            6544322100                             000000000                              00


Q ss_pred             HH------HcCCCHHHHHHHHHHhh-cC--CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCc-HHHHHHHHHH
Q 048269          152 TL------CQRKLVVEAKYLILKLS-EW--IKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPS-IDVVDKMIET  221 (465)
Q Consensus       152 ~~------~~~~~~~~a~~~~~~m~-~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~  221 (465)
                      ..      ...+++++|.+.|++.. .+  .+.+...+..+...+...|++++|+..|+...+.  .|+ ...|..+...
T Consensus       297 l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~  374 (615)
T TIGR00990       297 LGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASM  374 (615)
T ss_pred             HHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHH
Confidence            00      11256888889998877 22  2345567888888888999999999999998876  344 6678888888


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 048269          222 FFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLRE  301 (465)
Q Consensus       222 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~  301 (465)
                      +...|++++|...|+...+.  .|.+..+|..+...+...|++++|...|++..+... .+...+..+...+.+.|++++
T Consensus       375 ~~~~g~~~eA~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~~~la~~~~~~g~~~e  451 (615)
T TIGR00990       375 NLELGDPDKAEEDFDKALKL--NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSHIQLGVTQYKEGSIAS  451 (615)
T ss_pred             HHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHHHHHHHHHHHCCCHHH
Confidence            99999999999999998765  555788899999999999999999999999887642 356677788888999999999


Q ss_pred             HHHHHHHhcC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHhhcccCCCCCCCchHHHHH
Q 048269          302 AYKVVEEIEK---PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTM-HTYIMLLQGHLGKRGRKGPDPLVNFDTI  377 (465)
Q Consensus       302 a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~~~~~~~~~~~  377 (465)
                      |...|++...   .+...++.+...+...|++++|++.|++.++.  .|+. .++..+...                ++.
T Consensus       452 A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--~p~~~~~~~~~~~l----------------~~~  513 (615)
T TIGR00990       452 SMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL--EKETKPMYMNVLPL----------------INK  513 (615)
T ss_pred             HHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCccccccccHHHH----------------HHH
Confidence            9999998876   45678888889999999999999999998854  3321 111111100                111


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-hhHHHHHHHHhhccchHHHHHHHHHHHHcC
Q 048269          378 FVGGLVKAGKSLDAAKYVERVMNRGVEVPR-FDYNKFLHYYSNEEGVVMFEEVGKKLREVG  437 (465)
Q Consensus       378 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g  437 (465)
                      .+..+...|++++|.+++++....  .|+. ..+..+...+...|++++|...+++..+..
T Consensus       514 a~~~~~~~~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~  572 (615)
T TIGR00990       514 ALALFQWKQDFIEAENLCEKALII--DPECDIAVATMAQLLLQQGDVDEALKLFERAAELA  572 (615)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence            222344579999999999998874  4544 478889999999999999999999998774

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.87  E-value=8.4e-17  Score=169.48  Aligned_cols=375  Identities=11%  Similarity=0.014  Sum_probs=239.7

Q ss_pred             CCChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCh--HHH------------HHHH
Q 048269           50 PLSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVND--KTF------------KIAL  115 (465)
Q Consensus        50 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~------------~~l~  115 (465)
                      ..+++.|...|+.++...+.   +...+..+..++.+.|++++|+..|++..+.++.+.  ..+            ....
T Consensus       282 ~g~~~~A~~~l~~aL~~~P~---~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g  358 (1157)
T PRK11447        282 SGQGGKAIPELQQAVRANPK---DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQG  358 (1157)
T ss_pred             CCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHH
Confidence            34788999999998666555   789999999999999999999999999988765321  112            1224


Q ss_pred             HHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHH
Q 048269          116 MTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIE  195 (465)
Q Consensus       116 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~  195 (465)
                      ..+.+.|++++|+..|+++.+.. +.+...+..+..++...|++++|++.|++.....+.+...+..+...|. .++.++
T Consensus       359 ~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~  436 (1157)
T PRK11447        359 DAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEK  436 (1157)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHH
Confidence            56778899999999999998864 4567778888999999999999999999988444555666665655553 234555


Q ss_pred             HHHHHHHHHHCCCC--------CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHH
Q 048269          196 ASKIWNLMTDEGFE--------PSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQA  267 (465)
Q Consensus       196 a~~~~~~m~~~g~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a  267 (465)
                      |..+++.+....-.        .....+..+...+...|++++|.+.|++..+.  .|.+...+..+...|.+.|++++|
T Consensus       437 A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A  514 (1157)
T PRK11447        437 ALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQA  514 (1157)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHH
Confidence            55555443221000        00112333444555556666666666655543  333444555555555666666666


Q ss_pred             HHHHHHHHHCCCCCCHHHHH--------------------------------------------HHHHHHHhcCCHHHHH
Q 048269          268 YTMLEEMFKRGIEADNLTLS--------------------------------------------SIIYGLLARGRLREAY  303 (465)
Q Consensus       268 ~~~~~~m~~~~~~~~~~~~~--------------------------------------------~li~~~~~~~~~~~a~  303 (465)
                      ...++++.+.... +...+.                                            .+...+...|+.++|.
T Consensus       515 ~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~  593 (1157)
T PRK11447        515 DALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAE  593 (1157)
T ss_pred             HHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHH
Confidence            6666555543211 222221                                            2233455556666666


Q ss_pred             HHHHHhcCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhhcccC-----------CCCCCCc
Q 048269          304 KVVEEIEKPDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEP-TMHTYIMLLQGHLGKRG-----------RKGPDPL  371 (465)
Q Consensus       304 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~-----------~~~~~~~  371 (465)
                      .+++.- ..+...+..+...+.+.|++++|++.|++.++.  .| +......+...+...+.           ....+.+
T Consensus       594 ~~l~~~-p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~  670 (1157)
T PRK11447        594 ALLRQQ-PPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDS  670 (1157)
T ss_pred             HHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCC
Confidence            665521 134445566777778888888888888888764  34 34555555555544444           1112234


Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CC---CHhhHHHHHHHHhhccchHHHHHHHHHHHH
Q 048269          372 VNFDTIFVGGLVKAGKSLDAAKYVERVMNRGV--EV---PRFDYNKFLHYYSNEEGVVMFEEVGKKLRE  435 (465)
Q Consensus       372 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  435 (465)
                      ...+..+..++...|++++|.++++++....-  .|   +...+..+...+...|+.++|...+++...
T Consensus       671 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~  739 (1157)
T PRK11447        671 LNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV  739 (1157)
T ss_pred             hHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            55666777788888888888888888876321  11   123556667777888888888888888764

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.86  E-value=2.8e-16  Score=165.51  Aligned_cols=349  Identities=9%  Similarity=-0.005  Sum_probs=200.5

Q ss_pred             HHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-CHHHH------------HHH
Q 048269           83 IIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEY-SLEML------------NKV  149 (465)
Q Consensus        83 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~------------~~l  149 (465)
                      .+...|++++|+..|++..+.++.+..++..+...+.+.|++++|+..|++..+..... ....+            ...
T Consensus       278 ~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~  357 (1157)
T PRK11447        278 AAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQ  357 (1157)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHH
Confidence            34445666666666666655555555555566666666666666666666555432111 11111            111


Q ss_pred             HHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHH
Q 048269          150 VKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDD  229 (465)
Q Consensus       150 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~  229 (465)
                      ...+.+.|++++|+..|++.....+.+...+..+...+...|++++|++.|++..+.. +.+...+..+...+. .++.+
T Consensus       358 g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~  435 (1157)
T PRK11447        358 GDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPE  435 (1157)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHH
Confidence            2334455666666666666553334445555555666666666666666666665542 123344444444443 34556


Q ss_pred             HHHHHHHHHHHcCCC-------CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048269          230 EAMKVFQMMRVKRMD-------DLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREA  302 (465)
Q Consensus       230 ~A~~~~~~m~~~~~~-------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a  302 (465)
                      +|..+++.+......       ......+..+...+...|++++|.+.|++..+.... +...+..+...|.+.|++++|
T Consensus       436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A  514 (1157)
T PRK11447        436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQA  514 (1157)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHH
Confidence            665555443221000       001235677888999999999999999999887432 567788899999999999999


Q ss_pred             HHHHHHhcC--C-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----------------------------------
Q 048269          303 YKVVEEIEK--P-DISLYHGLIKGLLRLRRAREATQVFREMIKRGC----------------------------------  345 (465)
Q Consensus       303 ~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~----------------------------------  345 (465)
                      ...++++.+  | +...+..+...+...++.++|+..++.+.....                                  
T Consensus       515 ~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~  594 (1157)
T PRK11447        515 DALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEA  594 (1157)
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHH
Confidence            999999866  3 344444444444556666666666655432111                                  


Q ss_pred             -----CCCHHHHHHHHHHhhcccC-----------CCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-Hh
Q 048269          346 -----EPTMHTYIMLLQGHLGKRG-----------RKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVP-RF  408 (465)
Q Consensus       346 -----~p~~~~~~~ll~~~~~~~~-----------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~  408 (465)
                           +.+...+..+-..+...+.           ...-+.++..+..++..|...|++++|++.+++..+  ..|+ ..
T Consensus       595 ~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~--~~p~~~~  672 (1157)
T PRK11447        595 LLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPA--TANDSLN  672 (1157)
T ss_pred             HHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc--cCCCChH
Confidence                 1122222222222222222           112233456677777777777777777777776664  3343 33


Q ss_pred             hHHHHHHHHhhccchHHHHHHHHHHHHc
Q 048269          409 DYNKFLHYYSNEEGVVMFEEVGKKLREV  436 (465)
Q Consensus       409 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~  436 (465)
                      ++..+..++...|++++|.++++++.+.
T Consensus       673 ~~~~la~~~~~~g~~~eA~~~~~~al~~  700 (1157)
T PRK11447        673 TQRRVALAWAALGDTAAAQRTFNRLIPQ  700 (1157)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence            5566666777777888888888777765

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.85  E-value=2.3e-16  Score=136.89  Aligned_cols=338  Identities=14%  Similarity=0.131  Sum_probs=256.8

Q ss_pred             CChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh-cCCCCCHHhHHHHH
Q 048269          106 VNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLS-EWIKPNEIAYGWLI  184 (465)
Q Consensus       106 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~-~~~~~~~~~~~~li  184 (465)
                      .++.++.++|.++++....+.|.++|++..+...+.+..+||.+|.+-+-..    -.+++.+|. ..+.||..|+|+++
T Consensus       205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNalL  280 (625)
T KOG4422|consen  205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNALL  280 (625)
T ss_pred             CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHHH
Confidence            4678999999999999999999999999988878999999999997654332    278889998 88899999999999


Q ss_pred             HHHHhcCCHHH----HHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHH-HHHHHHHHHH----cC---CCCCCcchHH
Q 048269          185 KGYCDVGDLIE----ASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDE-AMKVFQMMRV----KR---MDDLGLSTYR  252 (465)
Q Consensus       185 ~~~~~~g~~~~----a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~----~~---~~~~~~~~~~  252 (465)
                      ++..+.|+++.    |.+++.+|++.|+.|...+|..+|..+++.++..+ |..++.++..    +.   +.|.+...|.
T Consensus       281 ~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~  360 (625)
T KOG4422|consen  281 SCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQ  360 (625)
T ss_pred             HHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHH
Confidence            99999998865    56788899999999999999999999999888754 5555555443    22   3444566788


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhcC----CCHhhHHHHH
Q 048269          253 IVIDWMCKRGKISQAYTMLEEMFKRG----IEAD---NLTLSSIIYGLLARGRLREAYKVVEEIEK----PDISLYHGLI  321 (465)
Q Consensus       253 ~li~~~~~~~~~~~a~~~~~~m~~~~----~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~li  321 (465)
                      ..+..|.+..+.+-|.++..-+....    +.|+   ..-|..+....++....+.-...++.|..    |+..+...++
T Consensus       361 ~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~l  440 (625)
T KOG4422|consen  361 SAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLL  440 (625)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHH
Confidence            88899999999999998877665321    2232   23356677778888889999999999887    8889999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccC-------------------------------CCCCCC
Q 048269          322 KGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRG-------------------------------RKGPDP  370 (465)
Q Consensus       322 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-------------------------------~~~~~~  370 (465)
                      ++....|.++-.-++|..++..|-.-+...-..++.-+++...                               ......
T Consensus       441 rA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~  520 (625)
T KOG4422|consen  441 RALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDW  520 (625)
T ss_pred             HHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccC
Confidence            9999999999999999999887754444444444444433331                               223344


Q ss_pred             chHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHhhHH---HHHHHHhhccchHHHHHHHHHHHHcCCCCchhHHH
Q 048269          371 LVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGV-EVPRFDYN---KFLHYYSNEEGVVMFEEVGKKLREVGLADLADIFQ  446 (465)
Q Consensus       371 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~---~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~  446 (465)
                      .....+...-.+.+.|..++|.++|.-+...+- .|-....+   -+++......+...|...++-|...+......+-.
T Consensus       521 ~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~~E~La~  600 (625)
T KOG4422|consen  521 PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPICEGLAQ  600 (625)
T ss_pred             ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchhhhHHHH
Confidence            555677777888899999999999998866442 23333344   56666777888999999999998877655554444


Q ss_pred             H
Q 048269          447 R  447 (465)
Q Consensus       447 ~  447 (465)
                      .
T Consensus       601 R  601 (625)
T KOG4422|consen  601 R  601 (625)
T ss_pred             H
Confidence            3

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.84  E-value=6.5e-18  Score=152.84  Aligned_cols=372  Identities=11%  Similarity=0.022  Sum_probs=291.7

Q ss_pred             ChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 048269           52 SWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFF  131 (465)
Q Consensus        52 ~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  131 (465)
                      ++++|++.-..+-..++.   +....-.+-..+.+..+.+....--....+.++.-..+|..+...+-..|++++|+..|
T Consensus        63 d~~~a~~h~nmv~~~d~t---~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y  139 (966)
T KOG4626|consen   63 DYKQAEKHCNMVGQEDPT---NTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQLQDALALY  139 (966)
T ss_pred             CHHHHHHHHhHhhccCCC---cccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchHHHHHHHH
Confidence            888998887776333333   33333444556777778887777666667777667789999999999999999999999


Q ss_pred             HHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCc
Q 048269          132 HIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPS  211 (465)
Q Consensus       132 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~  211 (465)
                      +.+.+.. +-....|..+..++...|+.+.|.+.|.+...-.+......+.+....-..|.+++|...|.+..+.  .|.
T Consensus       140 ~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~--qp~  216 (966)
T KOG4626|consen  140 RAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIET--QPC  216 (966)
T ss_pred             HHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhh--CCc
Confidence            9999875 4568889999999999999999999999887332333344445555666789999999999998876  343


Q ss_pred             -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHH
Q 048269          212 -IDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEA-DNLTLSSI  289 (465)
Q Consensus       212 -~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~l  289 (465)
                       ...|+.|...+...|+...|++.|++..+.  .|.-...|-.|...|...+.++.|...|.+....  .| ....+..+
T Consensus       217 fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gNl  292 (966)
T KOG4626|consen  217 FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNHAVAHGNL  292 (966)
T ss_pred             eeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcchhhccce
Confidence             567999999999999999999999998855  6645678999999999999999999999988765  34 46678888


Q ss_pred             HHHHHhcCCHHHHHHHHHHhcC--CC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHhhcccC-
Q 048269          290 IYGLLARGRLREAYKVVEEIEK--PD-ISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTM-HTYIMLLQGHLGKRG-  364 (465)
Q Consensus       290 i~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~-  364 (465)
                      ...|...|.++.|+..+++..+  |+ ...|+.|..++-..|++.+|.+.|.+.+..  .|+. ...+.+-..+...+. 
T Consensus       293 a~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLgni~~E~~~~  370 (966)
T KOG4626|consen  293 ACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLGNIYREQGKI  370 (966)
T ss_pred             EEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhccc
Confidence            8889999999999999999988  44 468999999999999999999999999854  4542 333444443322222 


Q ss_pred             ---------CCCCCCc-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh-hHHHHHHHHhhccchHHHHHHHHHH
Q 048269          365 ---------RKGPDPL-VNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRF-DYNKFLHYYSNEEGVVMFEEVGKKL  433 (465)
Q Consensus       365 ---------~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~  433 (465)
                               ...+.|. ...++.|...|-..|++++|+..+++.+.  ++|+.. .|+.+...|...|+.+.|.+.+.+.
T Consensus       371 e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rA  448 (966)
T KOG4626|consen  371 EEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRA  448 (966)
T ss_pred             hHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHH
Confidence                     2222333 34677888888889999999999988885  788765 8888888888889999999988888


Q ss_pred             HHcC
Q 048269          434 REVG  437 (465)
Q Consensus       434 ~~~g  437 (465)
                      +..+
T Consensus       449 I~~n  452 (966)
T KOG4626|consen  449 IQIN  452 (966)
T ss_pred             HhcC
Confidence            8764

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.83  E-value=3.9e-16  Score=157.25  Aligned_cols=414  Identities=10%  Similarity=0.026  Sum_probs=259.0

Q ss_pred             CCChhHHHHHHHHHhhcCCCCchhHHhhhhhCC-CCCCHH---HHHHHHhcCCCChhHHHHHHHHHhhcCCCCCCCHHhH
Q 048269            2 PVDPGHLVRVCTILYQQQYSPESRLHSSLSSCN-FNLTHE---FFLQICNNFPLSWRPVYLFFQYTQKAQPCFAHNSITF   77 (465)
Q Consensus         2 p~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~-~~~~~~---~~~~~l~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~   77 (465)
                      |-+|..+.....|..-.+  ....+........ ..+.+.   .....+..-..+++.|..+|+.++...|+   +...+
T Consensus        12 ~~~~~~~~d~~~ia~~~g--~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~---~~~a~   86 (765)
T PRK10049         12 ALSNNQIADWLQIALWAG--QDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQ---NDDYQ   86 (765)
T ss_pred             CCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHH
Confidence            456666666666666665  2222222222222 122222   22222223334677777777777555444   56667


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCC
Q 048269           78 NRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRK  157 (465)
Q Consensus        78 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~  157 (465)
                      ..+...+...|++++|+..++++.+..+.+.. +..+...+...|+.++|+..++++.+.. +.+...+..+..++...+
T Consensus        87 ~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~  164 (765)
T PRK10049         87 RGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNR  164 (765)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCC
Confidence            77777777778888888888777777665666 7777777777788888888887777754 345555566666777777


Q ss_pred             CHHHHHHHHHHhhcCCCCCH------HhHHHHHHHHHh-----cCCH---HHHHHHHHHHHHC-CCCCcHH-HH----HH
Q 048269          158 LVVEAKYLILKLSEWIKPNE------IAYGWLIKGYCD-----VGDL---IEASKIWNLMTDE-GFEPSID-VV----DK  217 (465)
Q Consensus       158 ~~~~a~~~~~~m~~~~~~~~------~~~~~li~~~~~-----~g~~---~~a~~~~~~m~~~-g~~~~~~-~~----~~  217 (465)
                      ..+.|++.++....  .|+.      .....++..+..     .+++   ++|+..++.+.+. ...|+.. .+    ..
T Consensus       165 ~~e~Al~~l~~~~~--~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d  242 (765)
T PRK10049        165 LSAPALGAIDDANL--TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARID  242 (765)
T ss_pred             ChHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHH
Confidence            77777777766552  2221      111222222221     1223   5677777777653 1222221 11    11


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHH
Q 048269          218 MIETFFKINKDDEAMKVFQMMRVKRMD-DLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEA---DNLTLSSIIYGL  293 (465)
Q Consensus       218 li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~li~~~  293 (465)
                      .+.++...|++++|++.|+.+.+.+.. | + .....+..+|...|++++|...|+++.+.....   .......+..++
T Consensus       243 ~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P-~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~  320 (765)
T PRK10049        243 RLGALLARDRYKDVISEYQRLKAEGQIIP-P-WAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSL  320 (765)
T ss_pred             HHHHHHHhhhHHHHHHHHHHhhccCCCCC-H-HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHH
Confidence            133445668888888888888766422 2 1 122224667888888888888888876543211   123455566677


Q ss_pred             HhcCCHHHHHHHHHHhcC--C-------------C---HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 048269          294 LARGRLREAYKVVEEIEK--P-------------D---ISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIML  355 (465)
Q Consensus       294 ~~~~~~~~a~~~~~~~~~--~-------------~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l  355 (465)
                      ...|++++|...++.+..  |             +   ...+..+...+...|+.++|+++++++...  .|+..     
T Consensus       321 ~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--~P~n~-----  393 (765)
T PRK10049        321 LESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--APGNQ-----  393 (765)
T ss_pred             HhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCH-----
Confidence            888888888888887765  2             1   123445566777788888888888888754  45432     


Q ss_pred             HHHhhcccCCCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-hhHHHHHHHHhhccchHHHHHHHHHHH
Q 048269          356 LQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPR-FDYNKFLHYYSNEEGVVMFEEVGKKLR  434 (465)
Q Consensus       356 l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~  434 (465)
                                       ..+..+...+...|++++|++.+++...  +.|+. ..+......+...|++++|+.++++++
T Consensus       394 -----------------~l~~~lA~l~~~~g~~~~A~~~l~~al~--l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll  454 (765)
T PRK10049        394 -----------------GLRIDYASVLQARGWPRAAENELKKAEV--LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVV  454 (765)
T ss_pred             -----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence                             2334456667899999999999999997  45764 477777778889999999999999999


Q ss_pred             HcCCCCchhHHHHHHHHHhH
Q 048269          435 EVGLADLADIFQRYGKKMAT  454 (465)
Q Consensus       435 ~~g~~~~~~~~~~~~~~~~~  454 (465)
                      +.  .|.......+.+....
T Consensus       455 ~~--~Pd~~~~~~~~~~~~~  472 (765)
T PRK10049        455 AR--EPQDPGVQRLARARDV  472 (765)
T ss_pred             Hh--CCCCHHHHHHHHHHHh
Confidence            85  5566666666655443

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.83  E-value=1.4e-15  Score=150.57  Aligned_cols=350  Identities=11%  Similarity=-0.018  Sum_probs=250.9

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHc
Q 048269           76 TFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQ  155 (465)
Q Consensus        76 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~  155 (465)
                      .+......+.+.|++++|+..|++..+..+ +...|..+..+|.+.|++++|++.++...+.. +.+...+..+..+|..
T Consensus       129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p-~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~  206 (615)
T TIGR00990       129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKP-DPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG  206 (615)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence            355667788999999999999999987654 56788899999999999999999999999865 5567788899999999


Q ss_pred             CCCHHHHHHHHHHhh--cCCC----------------------------CCHHhHHHH----------------------
Q 048269          156 RKLVVEAKYLILKLS--EWIK----------------------------PNEIAYGWL----------------------  183 (465)
Q Consensus       156 ~~~~~~a~~~~~~m~--~~~~----------------------------~~~~~~~~l----------------------  183 (465)
                      .|++++|+..|....  .+..                            ++...+..+                      
T Consensus       207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (615)
T TIGR00990       207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNEL  286 (615)
T ss_pred             cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccc
Confidence            999999987665443  1110                            100000000                      


Q ss_pred             --------HHHH------HhcCCHHHHHHHHHHHHHCC-CCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC
Q 048269          184 --------IKGY------CDVGDLIEASKIWNLMTDEG-FEP-SIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLG  247 (465)
Q Consensus       184 --------i~~~------~~~g~~~~a~~~~~~m~~~g-~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~  247 (465)
                              +..+      ...+++++|.+.|+...+.+ ..| ....|..+...+...|++++|+..|+.....  .|..
T Consensus       287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~  364 (615)
T TIGR00990       287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRV  364 (615)
T ss_pred             ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCc
Confidence                    0000      11256778888888888754 223 4456777788888889999999998888765  4535


Q ss_pred             cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC---CCHhhHHHHHHHH
Q 048269          248 LSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK---PDISLYHGLIKGL  324 (465)
Q Consensus       248 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~  324 (465)
                      ...|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...|++..+   .+...+..+...+
T Consensus       365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~  443 (615)
T TIGR00990       365 TQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQ  443 (615)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHH
Confidence            6678888888888889999999888887763 23567788888888888999999998888877   3456666777788


Q ss_pred             HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 048269          325 LRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVE  404 (465)
Q Consensus       325 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~  404 (465)
                      .+.|++++|+..|++.++.  .|+.                      +..|+.+...+...|++++|++.|++....  .
T Consensus       444 ~~~g~~~eA~~~~~~al~~--~P~~----------------------~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--~  497 (615)
T TIGR00990       444 YKEGSIASSMATFRRCKKN--FPEA----------------------PDVYNYYGELLLDQNKFDEAIEKFDTAIEL--E  497 (615)
T ss_pred             HHCCCHHHHHHHHHHHHHh--CCCC----------------------hHHHHHHHHHHHHccCHHHHHHHHHHHHhc--C
Confidence            8888999999998888753  3432                      233444566679999999999999999873  3


Q ss_pred             CCH-h-------hHHHHHHHHhhccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHhHHhh
Q 048269          405 VPR-F-------DYNKFLHYYSNEEGVVMFEEVGKKLREVGLADLADIFQRYGKKMATRER  457 (465)
Q Consensus       405 p~~-~-------~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  457 (465)
                      |+. .       .++..+..+...|++++|..++++..+.+.. ....+..+|+.....++
T Consensus       498 p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~-~~~a~~~la~~~~~~g~  557 (615)
T TIGR00990       498 KETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPE-CDIAVATMAQLLLQQGD  557 (615)
T ss_pred             CccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHccC
Confidence            321 1       1222222334469999999999999887522 22345555655444433

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.79  E-value=5.3e-15  Score=149.15  Aligned_cols=365  Identities=9%  Similarity=-0.025  Sum_probs=273.2

Q ss_pred             CCCChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHH
Q 048269           49 FPLSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMV  128 (465)
Q Consensus        49 ~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  128 (465)
                      ..++.+.|+.+|..+....   ..+...+..+..++.+.|++++|.++|++..+..+.+...+..++..+...|++++|+
T Consensus        27 ~~g~~~~A~~~~~~~~~~~---~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~  103 (765)
T PRK10049         27 WAGQDAEVITVYNRYRVHM---QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEAL  103 (765)
T ss_pred             HcCCHHHHHHHHHHHHhhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence            3357889999999972223   3467789999999999999999999999999988888888889999999999999999


Q ss_pred             HHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 048269          129 NFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGF  208 (465)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~  208 (465)
                      ..++++.+.. +.+.. +..+..++...|+.++|+..++++....+.+...+..+..++...|..+.|+..++....   
T Consensus       104 ~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---  178 (765)
T PRK10049        104 VKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL---  178 (765)
T ss_pred             HHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---
Confidence            9999998864 55666 888889999999999999999999966677788888888899999999999999987654   


Q ss_pred             CCcH------HHHHHHHHHHH-----hcCCH---HHHHHHHHHHHHc-CCCCCCcchHH----HHHHHHHhcCChHHHHH
Q 048269          209 EPSI------DVVDKMIETFF-----KINKD---DEAMKVFQMMRVK-RMDDLGLSTYR----IVIDWMCKRGKISQAYT  269 (465)
Q Consensus       209 ~~~~------~~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~-~~~~~~~~~~~----~li~~~~~~~~~~~a~~  269 (465)
                      .|+.      .....++....     ..+++   ++|++.++.+.+. ...|.+...+.    ..+.++...|++++|..
T Consensus       179 ~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~  258 (765)
T PRK10049        179 TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVIS  258 (765)
T ss_pred             CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            2331      11222333322     22334   7788889888854 22231111111    11345567799999999


Q ss_pred             HHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC--CC-----HhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048269          270 MLEEMFKRGIE-ADNLTLSSIIYGLLARGRLREAYKVVEEIEK--PD-----ISLYHGLIKGLLRLRRAREATQVFREMI  341 (465)
Q Consensus       270 ~~~~m~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~  341 (465)
                      .|+.+.+.+.. |+. ....+..+|...|++++|...|+++..  |.     ......+..++...|++++|..+++.+.
T Consensus       259 ~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~  337 (765)
T PRK10049        259 EYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTI  337 (765)
T ss_pred             HHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHh
Confidence            99999987632 332 223357789999999999999999876  22     2345667778899999999999999998


Q ss_pred             HcCCCCCHH-HHHHHHHHhhcccCCCCCCCch---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHH
Q 048269          342 KRGCEPTMH-TYIMLLQGHLGKRGRKGPDPLV---NFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEV-PRFDYNKFLHY  416 (465)
Q Consensus       342 ~~~~~p~~~-~~~~ll~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~  416 (465)
                      +.  .|... .+.           .....|+.   ..+..+...+...|++++|+++++++...  .| +...+..+...
T Consensus       338 ~~--~P~~~~~~~-----------~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--~P~n~~l~~~lA~l  402 (765)
T PRK10049        338 NN--SPPFLRLYG-----------SPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--APGNQGLRIDYASV  402 (765)
T ss_pred             hc--CCceEeecC-----------CCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence            54  23211 000           00112221   23345666788999999999999999874  45 55688899999


Q ss_pred             HhhccchHHHHHHHHHHHHcC
Q 048269          417 YSNEEGVVMFEEVGKKLREVG  437 (465)
Q Consensus       417 ~~~~g~~~~a~~~~~~~~~~g  437 (465)
                      +...|+.++|++.+++..+..
T Consensus       403 ~~~~g~~~~A~~~l~~al~l~  423 (765)
T PRK10049        403 LQARGWPRAAENELKKAEVLE  423 (765)
T ss_pred             HHhcCCHHHHHHHHHHHHhhC
Confidence            999999999999999999875

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.78  E-value=1.5e-13  Score=139.13  Aligned_cols=85  Identities=6%  Similarity=-0.053  Sum_probs=45.9

Q ss_pred             HHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHh-cCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCH
Q 048269           81 VDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAE-VRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLV  159 (465)
Q Consensus        81 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~  159 (465)
                      .+.|.+.|++++|++++.++.+.++.+......+...|.. .++ +.+..+++.    .++.+...+..+...|.+.|+.
T Consensus       189 ~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~  263 (987)
T PRK09782        189 LQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEK  263 (987)
T ss_pred             HHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCH
Confidence            4555555555555555555555555444444444445554 244 444444332    1224555555666666666666


Q ss_pred             HHHHHHHHHhh
Q 048269          160 VEAKYLILKLS  170 (465)
Q Consensus       160 ~~a~~~~~~m~  170 (465)
                      ++|.+++.++.
T Consensus       264 ~~A~~~L~~~~  274 (987)
T PRK09782        264 ARLQHYLIENK  274 (987)
T ss_pred             HHHHHHHHhCc
Confidence            66666666665

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.77  E-value=8.4e-14  Score=138.15  Aligned_cols=391  Identities=10%  Similarity=0.006  Sum_probs=223.7

Q ss_pred             CHHHHHHHHhcCCCChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHH
Q 048269           38 THEFFLQICNNFPLSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMT  117 (465)
Q Consensus        38 ~~~~~~~~l~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~  117 (465)
                      .......++..-.++.+.|+..|..++...+...  +.++ .++..+...|+.++|+..+++.......+......+...
T Consensus        35 ~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~--~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~l  111 (822)
T PRK14574         35 DTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQS--GQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARA  111 (822)
T ss_pred             hHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccch--hhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHH
Confidence            3334444443444466777777777644444311  1222 666666677777777777777763333343444444556


Q ss_pred             HHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHH
Q 048269          118 LAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEAS  197 (465)
Q Consensus       118 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~  197 (465)
                      +...|++++|+++|+.+.+.. +-+...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|+
T Consensus       112 y~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~-dp~~~~~l~layL~~~~~~~~~AL  189 (822)
T PRK14574        112 YRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER-DPTVQNYMTLSYLNRATDRNYDAL  189 (822)
T ss_pred             HHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc-CcchHHHHHHHHHHHhcchHHHHH
Confidence            777777777777777777654 444566666666777777777777777777632 333444444433443445555577


Q ss_pred             HHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHH----------------------------------------------
Q 048269          198 KIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEA----------------------------------------------  231 (465)
Q Consensus       198 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A----------------------------------------------  231 (465)
                      +.++++.+.. +-+...+..+..++.+.|-...|                                              
T Consensus       190 ~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d  268 (822)
T PRK14574        190 QASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIAD  268 (822)
T ss_pred             HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHH
Confidence            7777776653 22344444444444444333333                                              


Q ss_pred             --HHHHHHHHHc-CCCCCCcchH----HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048269          232 --MKVFQMMRVK-RMDDLGLSTY----RIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYK  304 (465)
Q Consensus       232 --~~~~~~m~~~-~~~~~~~~~~----~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~  304 (465)
                        +.-++.+... +..|.....|    --.+.++...|+..++++.|+.+...|.+....+-..+..+|...++.++|..
T Consensus       269 ~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~  348 (822)
T PRK14574        269 KALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAP  348 (822)
T ss_pred             HHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHH
Confidence              3333333321 1123121122    23455677888999999999999988877677788899999999999999999


Q ss_pred             HHHHhcCC---------CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-------------CCCCHHHHHHHHHH-hhc
Q 048269          305 VVEEIEKP---------DISLYHGLIKGLLRLRRAREATQVFREMIKRG-------------CEPTMHTYIMLLQG-HLG  361 (465)
Q Consensus       305 ~~~~~~~~---------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-------------~~p~~~~~~~ll~~-~~~  361 (465)
                      +++.+..+         +......|..+|...+++++|..+++++.+..             ..||-..+..+... +..
T Consensus       349 l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~  428 (822)
T PRK14574        349 ILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVA  428 (822)
T ss_pred             HHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHH
Confidence            99988551         23335678889999999999999999998631             01122222211111 111


Q ss_pred             ccC-----------CCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh-hHHHHHHHHhhccchHHHHHH
Q 048269          362 KRG-----------RKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRF-DYNKFLHYYSNEEGVVMFEEV  429 (465)
Q Consensus       362 ~~~-----------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~  429 (465)
                      .++           ...-+-|......+.+.+...|.+.+|.+.++....  +.|+.. +......++...|++++|..+
T Consensus       429 ~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~~~~~~~~~~al~l~e~~~A~~~  506 (822)
T PRK14574        429 LNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSLILERAQAETAMALQEWHQMELL  506 (822)
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccHHHHHHHHHHHHhhhhHHHHHHH
Confidence            111           222333444555555555555555555555544443  234322 444445555555555555555


Q ss_pred             HHHHHHc
Q 048269          430 GKKLREV  436 (465)
Q Consensus       430 ~~~~~~~  436 (465)
                      .+.+.+.
T Consensus       507 ~~~l~~~  513 (822)
T PRK14574        507 TDDVISR  513 (822)
T ss_pred             HHHHHhh
Confidence            5555543

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.76  E-value=3.6e-14  Score=123.46  Aligned_cols=379  Identities=15%  Similarity=0.125  Sum_probs=264.8

Q ss_pred             HHhHHHHHHHHHhcCChhHHHHHHHHHhhCCC-CChHHHHHHHHH--HHhcCCHHHH-HHHHHHhhhCC-----------
Q 048269           74 SITFNRMVDIIGKSRNIDLFWETLQEMGRRRL-VNDKTFKIALMT--LAEVRELKKM-VNFFHIMNDCG-----------  138 (465)
Q Consensus        74 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~--~~~~~~~~~a-~~~~~~~~~~~-----------  138 (465)
                      +.+=|+|+.. ...|.+.++.-+++.|.+.|+ +++..-..+++.  |....+.--+ .+.|-.|...|           
T Consensus       116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~  194 (625)
T KOG4422|consen  116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGA  194 (625)
T ss_pred             hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccccc
Confidence            3445566554 457888999999999999988 677665555543  2222222111 12233333222           


Q ss_pred             --------CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh-cCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 048269          139 --------CEYSLEMLNKVVKTLCQRKLVVEAKYLILKLS-EWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFE  209 (465)
Q Consensus       139 --------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~  209 (465)
                              .+.+..+|..+|.++|+--..+.|.+++++.. ...+.+..+||.+|.+-.-..+    .+++.+|.+..+.
T Consensus       195 vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~  270 (625)
T KOG4422|consen  195 VADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMT  270 (625)
T ss_pred             HHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcC
Confidence                    24567789999999999999999999999998 7779999999999987654433    7899999999999


Q ss_pred             CcHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHH-HHHHHHHHHH----CCCC
Q 048269          210 PSIDVVDKMIETFFKINKDDE----AMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQ-AYTMLEEMFK----RGIE  280 (465)
Q Consensus       210 ~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~-a~~~~~~m~~----~~~~  280 (465)
                      ||..|+|+++++..+.|+++.    |.+++.+|.+-|+.| ...+|..+|..+++.++..+ +..++.++..    +.++
T Consensus       271 Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVeP-sLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fk  349 (625)
T KOG4422|consen  271 PNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEP-SLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFK  349 (625)
T ss_pred             CchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCc-chhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCccc
Confidence            999999999999999998875    578889999999999 99999999999999998855 4444444432    2222


Q ss_pred             ----CCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC--------CC---HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 048269          281 ----ADNLTLSSIIYGLLARGRLREAYKVVEEIEK--------PD---ISLYHGLIKGLLRLRRAREATQVFREMIKRGC  345 (465)
Q Consensus       281 ----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--------~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~  345 (465)
                          .|...|...+..|.+..+.+-|.++-.-...        ++   ..-|..+....++....+.....|+.|+-+-+
T Consensus       350 p~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y  429 (625)
T KOG4422|consen  350 PITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAY  429 (625)
T ss_pred             CCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccee
Confidence                2566778888899999999999988776665        22   22356677788888999999999999998888


Q ss_pred             CCCHHHHHHHHHHhhcccC-------------------------------CCCCCCchHHHHHHHHHHHhc-CCHHHHH-
Q 048269          346 EPTMHTYIMLLQGHLGKRG-------------------------------RKGPDPLVNFDTIFVGGLVKA-GKSLDAA-  392 (465)
Q Consensus       346 ~p~~~~~~~ll~~~~~~~~-------------------------------~~~~~~~~~~~~~li~~~~~~-g~~~~A~-  392 (465)
                      -|+..+...++++....+.                               .....|+...-..+-....++ -++.++. 
T Consensus       430 ~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e  509 (625)
T KOG4422|consen  430 FPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYE  509 (625)
T ss_pred             cCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999998744433                               222222222111111111111 1122221 


Q ss_pred             HHHHHHHhCCCCCCHhhHHHHHHHHhhccchHHHHHHHHHHHHcC-CCCchhHHHHHHHHHhHHhhhhh
Q 048269          393 KYVERVMNRGVEVPRFDYNKFLHYYSNEEGVVMFEEVGKKLREVG-LADLADIFQRYGKKMATRERRRN  460 (465)
Q Consensus       393 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~  460 (465)
                      .--.+|.+..+  .....+...--+.+.|..++|.+++..+.+.+ -.|-++...+..+.+....++++
T Consensus       510 ~~~~R~r~~~~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~s  576 (625)
T KOG4422|consen  510 SQPIRQRAQDW--PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNS  576 (625)
T ss_pred             hhHHHHHhccC--ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCC
Confidence            12233443333  44556666677889999999999999996664 55666666767776666555544

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.70  E-value=1.5e-12  Score=132.13  Aligned_cols=346  Identities=10%  Similarity=-0.031  Sum_probs=229.9

Q ss_pred             HHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhC---CCCChHHHHHHHHHHHhcCC---HHHHH
Q 048269           55 PVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRR---RLVNDKTFKIALMTLAEVRE---LKKMV  128 (465)
Q Consensus        55 ~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~---~~~a~  128 (465)
                      .+.+.+..+....++   +......+.-...+.|+.++|.++|+.....   +..+.....-++..+.+.+.   ..+++
T Consensus       360 ~~~~~~~~~y~~~~~---~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  436 (987)
T PRK09782        360 EALRLARLLYQQEPA---NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVA  436 (987)
T ss_pred             HHHHHHHHHHhcCCC---CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHH
Confidence            444555555344466   7777777777888899999999999988763   12344455577777777655   23332


Q ss_pred             HH----------------------HHHhhh-CCC-CC--CHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHH
Q 048269          129 NF----------------------FHIMND-CGC-EY--SLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGW  182 (465)
Q Consensus       129 ~~----------------------~~~~~~-~~~-~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~  182 (465)
                      .+                      ++.... .+. ++  +...|..+..++.. ++.++|+..+.+.... .|+......
T Consensus       437 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~-~Pd~~~~L~  514 (987)
T PRK09782        437 ILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR-QPDAWQHRA  514 (987)
T ss_pred             HhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh-CCchHHHHH
Confidence            22                      111111 111 33  56677777777766 6777788877776622 244444334


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcC
Q 048269          183 LIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRG  262 (465)
Q Consensus       183 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~  262 (465)
                      +...+...|++++|...|+.+...  +|+...+..+..++.+.|++++|.+.++...+..  |.....+..+...+...|
T Consensus       515 lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~G  590 (987)
T PRK09782        515 VAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPG  590 (987)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCC
Confidence            445556788888888888887554  4455556677777888888888888888887653  423333333344444568


Q ss_pred             ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC---CCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 048269          263 KISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK---PDISLYHGLIKGLLRLRRAREATQVFRE  339 (465)
Q Consensus       263 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~  339 (465)
                      ++++|...+++..+.  .|+...+..+..++.+.|+.++|...+++...   .+...++.+..++...|++++|+..|++
T Consensus       591 r~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~  668 (987)
T PRK09782        591 QPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLER  668 (987)
T ss_pred             CHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            888888888888765  34677788888888888888888888888777   4456667777788888888888888888


Q ss_pred             HHHcCCCCCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-hhHHHHHHHHh
Q 048269          340 MIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPR-FDYNKFLHYYS  418 (465)
Q Consensus       340 m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~  418 (465)
                      ..+.  .|+....                      +..+..++...|++++|+..+++..+  +.|+. .+.........
T Consensus       669 AL~l--~P~~~~a----------------------~~nLA~al~~lGd~~eA~~~l~~Al~--l~P~~a~i~~~~g~~~~  722 (987)
T PRK09782        669 AHKG--LPDDPAL----------------------IRQLAYVNQRLDDMAATQHYARLVID--DIDNQALITPLTPEQNQ  722 (987)
T ss_pred             HHHh--CCCCHHH----------------------HHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCchhhhhhhHHHH
Confidence            8754  4543322                      33445556888888888888888886  45654 35555666666


Q ss_pred             hccchHHHHHHHHHHHHcC
Q 048269          419 NEEGVVMFEEVGKKLREVG  437 (465)
Q Consensus       419 ~~g~~~~a~~~~~~~~~~g  437 (465)
                      +..+++.+.+-+++-...+
T Consensus       723 ~~~~~~~a~~~~~r~~~~~  741 (987)
T PRK09782        723 QRFNFRRLHEEVGRRWTFS  741 (987)
T ss_pred             HHHHHHHHHHHHHHHhhcC
Confidence            6777777777777666554

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.70  E-value=3.6e-12  Score=126.70  Aligned_cols=378  Identities=11%  Similarity=0.047  Sum_probs=264.1

Q ss_pred             HHhhhhhCCCCC-CHHHHHHHHhcCCCChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCC
Q 048269           26 LHSSLSSCNFNL-THEFFLQICNNFPLSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRR  104 (465)
Q Consensus        26 ~~~~l~~~~~~~-~~~~~~~~l~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  104 (465)
                      +...++..+... ....+..++... ++.+.|+..++.++  .+. ..+......+...+...|++++|+++|+++.+..
T Consensus        57 L~qaL~~~P~~~~av~dll~l~~~~-G~~~~A~~~~eka~--~p~-n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d  132 (822)
T PRK14574         57 LQEESKAGPLQSGQVDDWLQIAGWA-GRDQEVIDVYERYQ--SSM-NISSRGLASAARAYRNEKRWDQALALWQSSLKKD  132 (822)
T ss_pred             HHHHHhhCccchhhHHHHHHHHHHc-CCcHHHHHHHHHhc--cCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            555555444441 122333444333 57789999999973  221 2234444444668888899999999999999999


Q ss_pred             CCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHH
Q 048269          105 LVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLI  184 (465)
Q Consensus       105 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li  184 (465)
                      +.++..+..++..+...++.++|++.++.+...  .|+...+..++..+...++..+|++.++++....+.+...+..+.
T Consensus       133 P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~  210 (822)
T PRK14574        133 PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHL  210 (822)
T ss_pred             CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            878888888889999999999999999999876  466666655555555566776699999999855566777777777


Q ss_pred             HHHHhcCCHHHHHHHHH------------------------------------------------HHHH-CCCCCcH-H-
Q 048269          185 KGYCDVGDLIEASKIWN------------------------------------------------LMTD-EGFEPSI-D-  213 (465)
Q Consensus       185 ~~~~~~g~~~~a~~~~~------------------------------------------------~m~~-~g~~~~~-~-  213 (465)
                      .+..+.|-...|.++..                                                .+.. .+-.|.. . 
T Consensus       211 ~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~  290 (822)
T PRK14574        211 EILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQAD  290 (822)
T ss_pred             HHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchH
Confidence            76666665544444333                                                2221 0111221 1 


Q ss_pred             ---HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCC-----CCCCHHH
Q 048269          214 ---VVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRG-----IEADNLT  285 (465)
Q Consensus       214 ---~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-----~~~~~~~  285 (465)
                         ...-.+-++...|++.++++.|+.+...+.+. ...+-..+.++|...+++++|..+|+.+....     ..++...
T Consensus       291 ~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~-P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~  369 (822)
T PRK14574        291 YQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKM-PDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLD  369 (822)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCC-CHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHH
Confidence               11234456778899999999999999888654 56688899999999999999999999987643     2234444


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHhcC--C---------------CH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 048269          286 LSSIIYGLLARGRLREAYKVVEEIEK--P---------------DI-SLYHGLIKGLLRLRRAREATQVFREMIKRGCEP  347 (465)
Q Consensus       286 ~~~li~~~~~~~~~~~a~~~~~~~~~--~---------------~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p  347 (465)
                      ...|..+|...+++++|..+++.+.+  |               |- ..+..++..+...|+..+|++.++++...  .|
T Consensus       370 ~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~--aP  447 (822)
T PRK14574        370 ADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST--AP  447 (822)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC
Confidence            67889999999999999999999877  2               11 12344566788899999999999999754  56


Q ss_pred             CHHHHHHHHHHhhcccC-----------CCCCCC-chHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 048269          348 TMHTYIMLLQGHLGKRG-----------RKGPDP-LVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFL  414 (465)
Q Consensus       348 ~~~~~~~ll~~~~~~~~-----------~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll  414 (465)
                      ...-............+           ...+.| +..+....+..+...|++.+|..+.+.+.+  ..|+......|-
T Consensus       448 ~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~--~~Pe~~~~~~l~  524 (822)
T PRK14574        448 ANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVIS--RSPEDIPSQELD  524 (822)
T ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--hCCCchhHHHHH
Confidence            54444433333333333           223344 456777888999999999999999999987  467666444443

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.68  E-value=7.7e-13  Score=123.30  Aligned_cols=281  Identities=12%  Similarity=0.061  Sum_probs=217.8

Q ss_pred             cCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHH--HHHHHHHcCCCHHHHHH
Q 048269           87 SRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLN--KVVKTLCQRKLVVEAKY  164 (465)
Q Consensus        87 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~~  164 (465)
                      .|+++.|.+.+....+....+...|........+.|+++.|.+.+.++.+.  .|+.....  .....+...|+++.|..
T Consensus        97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~  174 (398)
T PRK10747         97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH  174 (398)
T ss_pred             CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence            699999998888765543222333444455668999999999999999875  45554333  34678889999999999


Q ss_pred             HHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcH-------HHHHHHHHHHHhcCCHHHHHHHHHH
Q 048269          165 LILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSI-------DVVDKMIETFFKINKDDEAMKVFQM  237 (465)
Q Consensus       165 ~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~  237 (465)
                      .++++....+-+......+...|.+.|++++|.+++..+.+.+..++.       .+|..++.......+.+...++++.
T Consensus       175 ~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~  254 (398)
T PRK10747        175 GVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKN  254 (398)
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence            999999666888899999999999999999999999999998755332       2334444444455566777777777


Q ss_pred             HHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC---CCH
Q 048269          238 MRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK---PDI  314 (465)
Q Consensus       238 m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~  314 (465)
                      +.+.  .|.++.....+...+...|+.++|.+++++..+.  .+|....  ++.+....++.+++.+..+...+   .|.
T Consensus       255 lp~~--~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~  328 (398)
T PRK10747        255 QSRK--TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTP  328 (398)
T ss_pred             CCHH--HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCH
Confidence            6543  3447888999999999999999999999998874  4455322  33344566999999999998887   455


Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcCCHHHHHHH
Q 048269          315 SLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKY  394 (465)
Q Consensus       315 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~  394 (465)
                      ..+..+...+.+.+++++|.+.|+...+.  .|+..++..+-..+                       .+.|+.++|.++
T Consensus       329 ~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~-----------------------~~~g~~~~A~~~  383 (398)
T PRK10747        329 LLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADAL-----------------------DRLHKPEEAAAM  383 (398)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHH-----------------------HHcCCHHHHHHH
Confidence            66788899999999999999999999954  68887766555554                       899999999999


Q ss_pred             HHHHHh
Q 048269          395 VERVMN  400 (465)
Q Consensus       395 ~~~m~~  400 (465)
                      +++...
T Consensus       384 ~~~~l~  389 (398)
T PRK10747        384 RRDGLM  389 (398)
T ss_pred             HHHHHh
Confidence            998764

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.67  E-value=4.7e-12  Score=120.37  Aligned_cols=328  Identities=15%  Similarity=0.137  Sum_probs=204.4

Q ss_pred             HHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHH
Q 048269           81 VDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVV  160 (465)
Q Consensus        81 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~  160 (465)
                      ...+.-.|++++|.+++.+..+.++.....|..|...|-..|+.+++...+-.+.... +-|...|..+.....+.|+++
T Consensus       146 AN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~  224 (895)
T KOG2076|consen  146 ANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNIN  224 (895)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHH
Confidence            3344444888888888888888877777778888888888888888877776655543 556677777777777888888


Q ss_pred             HHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHH----HHHHHHHHHHhcCCHHHHHHHHH
Q 048269          161 EAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSID----VVDKMIETFFKINKDDEAMKVFQ  236 (465)
Q Consensus       161 ~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~----~~~~li~~~~~~g~~~~A~~~~~  236 (465)
                      +|.-+|.+..+-.+++...+---+..|-+.|+...|..-|.++....-+.|..    ..-.++..+...++-+.|.+.++
T Consensus       225 qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le  304 (895)
T KOG2076|consen  225 QARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALE  304 (895)
T ss_pred             HHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            88888888775556666666666677778888888888888877653211222    22334555666666677777777


Q ss_pred             HHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH--------------------------HHHH
Q 048269          237 MMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTL--------------------------SSII  290 (465)
Q Consensus       237 ~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~--------------------------~~li  290 (465)
                      .....+....+...++.++..+.+...++.+......+......+|..-+                          ..++
T Consensus       305 ~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~  384 (895)
T KOG2076|consen  305 GALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLM  384 (895)
T ss_pred             HHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHh
Confidence            76653323325667777788888888888777777766652111221111                          0111


Q ss_pred             HHHH--hcCCHHHHHHHHHHhcC----CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccC
Q 048269          291 YGLL--ARGRLREAYKVVEEIEK----PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRG  364 (465)
Q Consensus       291 ~~~~--~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~  364 (465)
                      -++.  +.+...+++.-|-....    .+...|.-+..+|...|++.+|+.+|..+......-+..              
T Consensus       385 icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~--------------  450 (895)
T KOG2076|consen  385 ICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAF--------------  450 (895)
T ss_pred             hhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchh--------------
Confidence            2222  22333333333322222    345566667777777777777777777776442211211              


Q ss_pred             CCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh-hHHHHHHHHhhccchHHHHHHHHHHH
Q 048269          365 RKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRF-DYNKFLHYYSNEEGVVMFEEVGKKLR  434 (465)
Q Consensus       365 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~  434 (465)
                               .|-.+.++|...|.+++|.+.|++.+.  ..|+.. .--.|-..+.+.|+.++|.+.++.+.
T Consensus       451 ---------vw~~~a~c~~~l~e~e~A~e~y~kvl~--~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~  510 (895)
T KOG2076|consen  451 ---------VWYKLARCYMELGEYEEAIEFYEKVLI--LAPDNLDARITLASLYQQLGNHEKALETLEQII  510 (895)
T ss_pred             ---------hhHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence                     233444556777777777777777775  345433 44445555666777777777777744

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.66  E-value=9.6e-13  Score=110.72  Aligned_cols=288  Identities=13%  Similarity=0.096  Sum_probs=207.8

Q ss_pred             cCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH------HHHHHHHHHHHcCCCHH
Q 048269           87 SRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSL------EMLNKVVKTLCQRKLVV  160 (465)
Q Consensus        87 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~ll~~~~~~~~~~  160 (465)
                      ..+.++|++.|-+|.+.++.+..+--++.+.|.+.|..+.|+++.+.+.++   ||.      ...-.|..-|...|-+|
T Consensus        48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~D  124 (389)
T COG2956          48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLD  124 (389)
T ss_pred             hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhh
Confidence            456778888888888766666667777888888888888888888877763   332      22334566677888888


Q ss_pred             HHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCc----HHHHHHHHHHHHhcCCHHHHHHHHH
Q 048269          161 EAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPS----IDVVDKMIETFFKINKDDEAMKVFQ  236 (465)
Q Consensus       161 ~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~  236 (465)
                      .|+.+|..+...-.--......|+..|-...+|++|+++-+++.+.|-++.    ...|..|...+.-..+++.|...+.
T Consensus       125 RAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~  204 (389)
T COG2956         125 RAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK  204 (389)
T ss_pred             HHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence            888888888732233455677888888888888888888888887765443    2346666677777788888888888


Q ss_pred             HHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC--CCH
Q 048269          237 MMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK--PDI  314 (465)
Q Consensus       237 ~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~  314 (465)
                      ...+.  .|..+..--.+.+.....|++++|.+.++...+.+...-+.+...|..+|...|+.++....+..+.+  +..
T Consensus       205 kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~  282 (389)
T COG2956         205 KALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA  282 (389)
T ss_pred             HHHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc
Confidence            88766  44345555556677888899999999998888887666677778888889999999998888888776  555


Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcCCHHHHHHH
Q 048269          315 SLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKY  394 (465)
Q Consensus       315 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~  394 (465)
                      ..-..+-..-....-.+.|...+.+-+..  .|+...+.-++......                    ...|...+....
T Consensus       283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~d--------------------aeeg~~k~sL~~  340 (389)
T COG2956         283 DAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLAD--------------------AEEGRAKESLDL  340 (389)
T ss_pred             cHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhcc--------------------ccccchhhhHHH
Confidence            55555555545555567777766666644  68888888888776322                    344556777777


Q ss_pred             HHHHHhC
Q 048269          395 VERVMNR  401 (465)
Q Consensus       395 ~~~m~~~  401 (465)
                      ++.|...
T Consensus       341 lr~mvge  347 (389)
T COG2956         341 LRDMVGE  347 (389)
T ss_pred             HHHHHHH
Confidence            7777653

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.66  E-value=5.8e-12  Score=120.63  Aligned_cols=395  Identities=11%  Similarity=0.049  Sum_probs=228.2

Q ss_pred             ChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCC---CChHHHHHHHHHHHhcCCHHHHH
Q 048269           52 SWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRL---VNDKTFKIALMTLAEVRELKKMV  128 (465)
Q Consensus        52 ~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~  128 (465)
                      ..+.+...+..+....+   .|+.+.+.|...|.-.|+++.++.+.+.+.....   .-...|-.+.++|...|++++|.
T Consensus       251 s~~~~~~ll~~ay~~n~---~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~  327 (1018)
T KOG2002|consen  251 SYKKGVQLLQRAYKENN---ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAF  327 (1018)
T ss_pred             HHHHHHHHHHHHHhhcC---CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHH
Confidence            45577777777733333   3777888888888888888888888887776543   23346778888888888888888


Q ss_pred             HHHHHhhhCCCCCCH--HHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcC----CHHHHHHHHHH
Q 048269          129 NFFHIMNDCGCEYSL--EMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVG----DLIEASKIWNL  202 (465)
Q Consensus       129 ~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g----~~~~a~~~~~~  202 (465)
                      ..|.+..+..  ++.  ..+-.+.+.+.+.|+++.+...|+.+....+-+..+...|...|...+    ..+.|..++..
T Consensus       328 ~yY~~s~k~~--~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K  405 (1018)
T KOG2002|consen  328 KYYMESLKAD--NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGK  405 (1018)
T ss_pred             HHHHHHHccC--CCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHH
Confidence            8887766643  333  334457778888888888888888877656677777777777777664    34555556555


Q ss_pred             HHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH----HHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHC-
Q 048269          203 MTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMM----RVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKR-  277 (465)
Q Consensus       203 m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-  277 (465)
                      ..+.- +.|...|-.+...+-...-+.. +.+|...    ...+..+ .+...|.+...+...|+++.|...|...... 
T Consensus       406 ~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~i-p~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~  482 (1018)
T KOG2002|consen  406 VLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQI-PPEVLNNVASLHFRLGNIEKALEHFKSALGKL  482 (1018)
T ss_pred             HHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCC-CHHHHHhHHHHHHHhcChHHHHHHHHHHhhhh
Confidence            55442 3456666666665554443333 4444332    2333333 5667777777777777777777777766543 


Q ss_pred             --CCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHhcC--CCHh-hHHHHHHHHHhcCCHHHHHHHHHHHHHc-CC
Q 048269          278 --GIEADN------LTLSSIIYGLLARGRLREAYKVVEEIEK--PDIS-LYHGLIKGLLRLRRAREATQVFREMIKR-GC  345 (465)
Q Consensus       278 --~~~~~~------~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~  345 (465)
                        ...+|.      .+--.+...+-..++.+.|.+.+..+.+  |... .|--+.......+...+|...++..... .-
T Consensus       483 ~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~  562 (1018)
T KOG2002|consen  483 LEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSS  562 (1018)
T ss_pred             hhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccC
Confidence              112222      1222233444445556666666655554  2221 1222221111223444444444444322 11


Q ss_pred             CCCH----------------------------------HHHHHHHHHhhcccC-----------------------CCCC
Q 048269          346 EPTM----------------------------------HTYIMLLQGHLGKRG-----------------------RKGP  368 (465)
Q Consensus       346 ~p~~----------------------------------~~~~~ll~~~~~~~~-----------------------~~~~  368 (465)
                      .|+.                                  .+...|-..+.....                       -..-
T Consensus       563 np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d  642 (1018)
T KOG2002|consen  563 NPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND  642 (1018)
T ss_pred             CcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC
Confidence            2222                                  222222221111111                       0111


Q ss_pred             CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhccchHHHHHHHHHHHHcC-CCCchhHHHH
Q 048269          369 DPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNEEGVVMFEEVGKKLREVG-LADLADIFQR  447 (465)
Q Consensus       369 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g-~~~~~~~~~~  447 (465)
                      +-|...-|.+.-.++..|++.+|..+|.+..+... -...+|-.+..+|...|++-.|.++++...+.- ..-.+.+...
T Consensus       643 pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~  721 (1018)
T KOG2002|consen  643 PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHY  721 (1018)
T ss_pred             cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHH
Confidence            22233335566667777888888888888777532 344567777888888888888888888777663 3334444555


Q ss_pred             HHHHHhHH
Q 048269          448 YGKKMATR  455 (465)
Q Consensus       448 ~~~~~~~~  455 (465)
                      +++..-.+
T Consensus       722 Lara~y~~  729 (1018)
T KOG2002|consen  722 LARAWYEA  729 (1018)
T ss_pred             HHHHHHHh
Confidence            55443333

>TIGR00540 hemY_coli hemY protein

Probab=99.65  E-value=2.1e-12  Score=120.98  Aligned_cols=297  Identities=11%  Similarity=0.033  Sum_probs=214.0

Q ss_pred             HHHHHHHH--HhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH--HHHHHHHHH
Q 048269           77 FNRMVDII--GKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSL--EMLNKVVKT  152 (465)
Q Consensus        77 ~~~l~~~~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~  152 (465)
                      +..+.++.  ...|+++.|.+.+.+..+..+.+...+-....+..+.|+.+.|.+.+....+..  |+.  ...-.....
T Consensus        85 ~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l  162 (409)
T TIGR00540        85 QKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRI  162 (409)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHH
Confidence            33444443  456999999999998877655444556666788889999999999999987653  443  344445788


Q ss_pred             HHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHH---HhcCCHH
Q 048269          153 LCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETF---FKINKDD  229 (465)
Q Consensus       153 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~---~~~g~~~  229 (465)
                      +...|+++.|...++.+....|-+......+...+...|+++.|.+.+..+.+.+..+.......-..++   ...+..+
T Consensus       163 ~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~  242 (409)
T TIGR00540       163 LLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMAD  242 (409)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence            8899999999999999995557788899999999999999999999999999987543332212112222   3333333


Q ss_pred             HHHHHHHHHHHcCC--CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH--H-HHHHHHHHhcCCHHHHHH
Q 048269          230 EAMKVFQMMRVKRM--DDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLT--L-SSIIYGLLARGRLREAYK  304 (465)
Q Consensus       230 ~A~~~~~~m~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~-~~li~~~~~~~~~~~a~~  304 (465)
                      .+.+.+..+.....  .+.+...+..+...+...|+.++|.+++++..+..  ||...  + ..........++.+.+.+
T Consensus       243 ~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~  320 (409)
T TIGR00540       243 EGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEK  320 (409)
T ss_pred             cCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHH
Confidence            33445555444311  11277889999999999999999999999999873  33331  1 111222334578888888


Q ss_pred             HHHHhcC--C-CH--hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccCCCCCCCchHHHHHHH
Q 048269          305 VVEEIEK--P-DI--SLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFV  379 (465)
Q Consensus       305 ~~~~~~~--~-~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li  379 (465)
                      .++...+  | |.  ....++...+.+.|++++|.+.|+........|+...+..+..                      
T Consensus       321 ~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~----------------------  378 (409)
T TIGR00540       321 LIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAAD----------------------  378 (409)
T ss_pred             HHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHH----------------------
Confidence            8888776  3 33  5566888899999999999999996444455788777654444                      


Q ss_pred             HHHHhcCCHHHHHHHHHHHHh
Q 048269          380 GGLVKAGKSLDAAKYVERVMN  400 (465)
Q Consensus       380 ~~~~~~g~~~~A~~~~~~m~~  400 (465)
                       .+.+.|+.++|.+++++...
T Consensus       379 -ll~~~g~~~~A~~~~~~~l~  398 (409)
T TIGR00540       379 -AFDQAGDKAEAAAMRQDSLG  398 (409)
T ss_pred             -HHHHcCCHHHHHHHHHHHHH
Confidence             45899999999999998654

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.65  E-value=9.7e-16  Score=136.45  Aligned_cols=256  Identities=14%  Similarity=0.130  Sum_probs=69.0

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHhhCC--CCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcC
Q 048269           79 RMVDIIGKSRNIDLFWETLQEMGRRR--LVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQR  156 (465)
Q Consensus        79 ~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~  156 (465)
                      .+...+.+.|++++|+++++......  +.+...|..+.......++++.|+..++.+...+ +-+...+..++.. ...
T Consensus        13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~   90 (280)
T PF13429_consen   13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD   90 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence            33555555556666655554332222  2233344444444455555556666555555543 2234444444444 455


Q ss_pred             CCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 048269          157 KLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEG-FEPSIDVVDKMIETFFKINKDDEAMKVF  235 (465)
Q Consensus       157 ~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~  235 (465)
                      +++++|.+++.+.-.. .++...+..++..+.+.++++++.++++.+.... .+.+...|..+...+.+.|+.++|.+.+
T Consensus        91 ~~~~~A~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~  169 (280)
T PF13429_consen   91 GDPEEALKLAEKAYER-DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY  169 (280)
T ss_dssp             ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             cccccccccccccccc-ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            5555555555543311 2344444555555555556665555555554321 2334455555555555556666666666


Q ss_pred             HHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC---C
Q 048269          236 QMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK---P  312 (465)
Q Consensus       236 ~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~  312 (465)
                      ++..+.  .|.+......++..+...|+.+++..+++...+.. +.|+..+..+..+|...|+.++|...|++..+   .
T Consensus       170 ~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~  246 (280)
T PF13429_consen  170 RKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD  246 (280)
T ss_dssp             HHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccccc
Confidence            555544  34345555555555555555555555555554432 22344445555555555666666665555544   3


Q ss_pred             CHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 048269          313 DISLYHGLIKGLLRLRRAREATQVFREM  340 (465)
Q Consensus       313 ~~~~~~~li~~~~~~~~~~~a~~~~~~m  340 (465)
                      |+.....+..++...|+.++|.++.++.
T Consensus       247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~  274 (280)
T PF13429_consen  247 DPLWLLAYADALEQAGRKDEALRLRRQA  274 (280)
T ss_dssp             -HHHHHHHHHHHT---------------
T ss_pred             cccccccccccccccccccccccccccc
Confidence            4445555555555556666665555544

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.64  E-value=1.6e-11  Score=116.81  Aligned_cols=357  Identities=12%  Similarity=0.088  Sum_probs=275.4

Q ss_pred             CChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 048269           51 LSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNF  130 (465)
Q Consensus        51 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  130 (465)
                      ++.+.|.+++..++...+.   +...|..|...|-..|+.+++...+-.+-..++.+...|..+.....+.|+++.|.-+
T Consensus       153 g~~eeA~~i~~EvIkqdp~---~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~c  229 (895)
T KOG2076|consen  153 GDLEEAEEILMEVIKQDPR---NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYC  229 (895)
T ss_pred             CCHHHHHHHHHHHHHhCcc---chhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence            4788999999999776665   8999999999999999999999998877777777889999999999999999999999


Q ss_pred             HHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCC-HH----hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048269          131 FHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPN-EI----AYGWLIKGYCDVGDLIEASKIWNLMTD  205 (465)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-~~----~~~~li~~~~~~g~~~~a~~~~~~m~~  205 (465)
                      |.+..+.. +++...+---...|-+.|+...|..-|.++..-.+|. ..    ..-.+++.+...++.+.|.+.++....
T Consensus       230 y~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s  308 (895)
T KOG2076|consen  230 YSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS  308 (895)
T ss_pred             HHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence            99999976 6666666667788999999999999999998333332 22    223446667778888999998888876


Q ss_pred             C-CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--------------------------CCcchHHHHHHHH
Q 048269          206 E-GFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDD--------------------------LGLSTYRIVIDWM  258 (465)
Q Consensus       206 ~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--------------------------~~~~~~~~li~~~  258 (465)
                      . +-..+...++.++..+.+..+++.|......+......+                          .+..++ .+.-++
T Consensus       309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~icL  387 (895)
T KOG2076|consen  309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMICL  387 (895)
T ss_pred             hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhhhh
Confidence            2 223456678899999999999999999888887621111                          011221 222334


Q ss_pred             HhcCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC----CCHhhHHHHHHHHHhcCCHHH
Q 048269          259 CKRGKISQAYTMLEEMFKRG--IEADNLTLSSIIYGLLARGRLREAYKVVEEIEK----PDISLYHGLIKGLLRLRRARE  332 (465)
Q Consensus       259 ~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~  332 (465)
                      .+....+....+...+...+  +.-+...|.-+..+|.+.|++.+|..+|..+..    .+...|-.+..+|...|.+++
T Consensus       388 ~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~  467 (895)
T KOG2076|consen  388 VHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEE  467 (895)
T ss_pred             hcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHH
Confidence            44555555556666666665  344567889999999999999999999999987    567789999999999999999


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHh--------CCCC
Q 048269          333 ATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMN--------RGVE  404 (465)
Q Consensus       333 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~~~~  404 (465)
                      |.+.|+..+.  ..|+.....+-+..+                      +.+.|+.++|.+.++.+..        .+..
T Consensus       468 A~e~y~kvl~--~~p~~~D~Ri~Lasl----------------------~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~  523 (895)
T KOG2076|consen  468 AIEFYEKVLI--LAPDNLDARITLASL----------------------YQQLGNHEKALETLEQIINPDGRNAEACAWE  523 (895)
T ss_pred             HHHHHHHHHh--cCCCchhhhhhHHHH----------------------HHhcCCHHHHHHHHhcccCCCccchhhcccc
Confidence            9999999984  467655544444443                      6889999999999999642        2345


Q ss_pred             CCHhhHHHHHHHHhhccchHHHHHHHHHHHHc
Q 048269          405 VPRFDYNKFLHYYSNEEGVVMFEEVGKKLREV  436 (465)
Q Consensus       405 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  436 (465)
                      |+....-.....+...|+.++...+.-.|+..
T Consensus       524 ~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~  555 (895)
T KOG2076|consen  524 PERRILAHRCDILFQVGKREEFINTASTLVDD  555 (895)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            55666666667778889998888887777763

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.64  E-value=2.9e-15  Score=133.40  Aligned_cols=250  Identities=13%  Similarity=0.094  Sum_probs=115.9

Q ss_pred             CChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 048269           51 LSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNF  130 (465)
Q Consensus        51 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  130 (465)
                      ++++.|+++++.. ........|...|..+.......++++.|.+.++++...+..++..+..++.. ...+++++|.++
T Consensus        22 ~~~~~Al~~L~~~-~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~   99 (280)
T PF13429_consen   22 GDYEKALEVLKKA-AQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKL   99 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc
Confidence            4889999999653 22211133667777777788889999999999999998887777778888887 799999999999


Q ss_pred             HHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh--cCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 048269          131 FHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLS--EWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGF  208 (465)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~--~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~  208 (465)
                      +....+.  .++...+..++..+.+.++++++..+++++.  ...+.+...|..+...+.+.|+.++|++.+++..+.  
T Consensus       100 ~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--  175 (280)
T PF13429_consen  100 AEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL--  175 (280)
T ss_dssp             --------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--
T ss_pred             ccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--
Confidence            9877654  3667778889999999999999999999977  445678889999999999999999999999999987  


Q ss_pred             CC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 048269          209 EP-SIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLS  287 (465)
Q Consensus       209 ~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~  287 (465)
                      .| |......++..+...|+.+++.+++....+..  |.++..+..+..+|...|+.++|..+|++..+.. +.|+.+..
T Consensus       176 ~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~--~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~  252 (280)
T PF13429_consen  176 DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA--PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLL  252 (280)
T ss_dssp             -TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--cCHHHHHHHHHHHhcccccccccccccccccccc-cccccccc
Confidence            45 57788899999999999999999999888764  4478889999999999999999999999988863 34888889


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHh
Q 048269          288 SIIYGLLARGRLREAYKVVEEI  309 (465)
Q Consensus       288 ~li~~~~~~~~~~~a~~~~~~~  309 (465)
                      .+..++...|+.++|.++..++
T Consensus       253 ~~a~~l~~~g~~~~A~~~~~~~  274 (280)
T PF13429_consen  253 AYADALEQAGRKDEALRLRRQA  274 (280)
T ss_dssp             HHHHHHT---------------
T ss_pred             cccccccccccccccccccccc
Confidence            9999999999999999988765

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.64  E-value=3.9e-12  Score=118.60  Aligned_cols=291  Identities=12%  Similarity=0.033  Sum_probs=223.5

Q ss_pred             HHHHHHHhcCCCChhHHHHHHHHHhhcCCCCCCCHHhHHHH-HHHHHhcCChhHHHHHHHHHhhCCCCCh-HHHHHHHHH
Q 048269           40 EFFLQICNNFPLSWRPVYLFFQYTQKAQPCFAHNSITFNRM-VDIIGKSRNIDLFWETLQEMGRRRLVND-KTFKIALMT  117 (465)
Q Consensus        40 ~~~~~~l~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~l~~~  117 (465)
                      .+...++....++++.|.+..... ...   .+++..+..+ ..+..+.|+++.|.+.++++.+..+.+. .........
T Consensus        87 ~~~~gl~a~~eGd~~~A~k~l~~~-~~~---~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l  162 (398)
T PRK10747         87 QTEQALLKLAEGDYQQVEKLMTRN-ADH---AEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRI  162 (398)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHH-Hhc---ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence            345666666667999999887775 222   2234444444 5555899999999999999987654332 222244678


Q ss_pred             HHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHH--------hHHHHHHHHHh
Q 048269          118 LAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEI--------AYGWLIKGYCD  189 (465)
Q Consensus       118 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~--------~~~~li~~~~~  189 (465)
                      +...|+++.|...++.+.+.. +-+...+..+...|.+.|++++|.+++..+.+....+..        +|..++.....
T Consensus       163 ~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~  241 (398)
T PRK10747        163 QLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMA  241 (398)
T ss_pred             HHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999999876 667888999999999999999999999999922222222        34444554455


Q ss_pred             cCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHH
Q 048269          190 VGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYT  269 (465)
Q Consensus       190 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~  269 (465)
                      ..+.+...++++.+.+. .+.+......+...+...|+.++|.+++++..+.  .+ +.  --.++.+....++.+++.+
T Consensus       242 ~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~-~~--~l~~l~~~l~~~~~~~al~  315 (398)
T PRK10747        242 DQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QY-DE--RLVLLIPRLKTNNPEQLEK  315 (398)
T ss_pred             hcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CC-CH--HHHHHHhhccCCChHHHHH
Confidence            56667777777776443 2457888899999999999999999999998874  33 43  2233455556699999999


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC--CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048269          270 MLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK--PDISLYHGLIKGLLRLRRAREATQVFREMIK  342 (465)
Q Consensus       270 ~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  342 (465)
                      ..+...+... -|+..+..+...+.+.+++++|.+.|+...+  |+...|..+...+.+.|+.++|.+++++-..
T Consensus       316 ~~e~~lk~~P-~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~  389 (398)
T PRK10747        316 VLRQQIKQHG-DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM  389 (398)
T ss_pred             HHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            9999987733 3667788999999999999999999999988  9999999999999999999999999998754

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.63  E-value=3.5e-12  Score=112.11  Aligned_cols=396  Identities=11%  Similarity=0.046  Sum_probs=251.1

Q ss_pred             CCCCCCHHHHHHHHhcCCC--ChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCC-CC--
Q 048269           33 CNFNLTHEFFLQICNNFPL--SWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRL-VN--  107 (465)
Q Consensus        33 ~~~~~~~~~~~~~l~~~~~--~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~--  107 (465)
                      .+..++...+..+...+..  -...|+..++.+ .+..-|+.....-..+-..+.+.+.+.+|++.++.....-+ .+  
T Consensus       195 inldltfsvl~nlaqqy~~ndm~~ealntyeii-vknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~  273 (840)
T KOG2003|consen  195 INLDLTFSVLFNLAQQYEANDMTAEALNTYEII-VKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKD  273 (840)
T ss_pred             ccccchHHHHHHHHHHhhhhHHHHHHhhhhhhh-hcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchh
Confidence            3455666666666555543  244677777775 44433333333334566778888899999999877665433 22  


Q ss_pred             --hHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh--cCC----------
Q 048269          108 --DKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLS--EWI----------  173 (465)
Q Consensus       108 --~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~--~~~----------  173 (465)
                        ....+.+...+.+.|.++.|+..|+...+.  .|+..+-..|+-++..-|+.++..+.|.+|.  .+.          
T Consensus       274 ~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~  351 (840)
T KOG2003|consen  274 MRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEK  351 (840)
T ss_pred             hHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCc
Confidence              234556666788999999999999988775  5787776666667777889999999999886  332          


Q ss_pred             -CCCHHhHHHHH-----HHHHhcC--CHHHHHHHHHHHHHCCCCCcHH-------------HH--------HHHHHHHHh
Q 048269          174 -KPNEIAYGWLI-----KGYCDVG--DLIEASKIWNLMTDEGFEPSID-------------VV--------DKMIETFFK  224 (465)
Q Consensus       174 -~~~~~~~~~li-----~~~~~~g--~~~~a~~~~~~m~~~g~~~~~~-------------~~--------~~li~~~~~  224 (465)
                       .|+....+.-|     +-+-+..  +-++++-.-.++..--+.|+-.             .+        ..-...+.+
T Consensus       352 ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk  431 (840)
T KOG2003|consen  352 DDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLK  431 (840)
T ss_pred             CCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHh
Confidence             22222222222     1111111  1111221111222111122110             00        011224677


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCC------------------------------CcchHHHHH-----HHHHhcCChHHHHH
Q 048269          225 INKDDEAMKVFQMMRVKRMDDL------------------------------GLSTYRIVI-----DWMCKRGKISQAYT  269 (465)
Q Consensus       225 ~g~~~~A~~~~~~m~~~~~~~~------------------------------~~~~~~~li-----~~~~~~~~~~~a~~  269 (465)
                      .|+++.|.+++.-+.+..-...                              +..-||.-.     ..-..+|++++|.+
T Consensus       432 ~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~  511 (840)
T KOG2003|consen  432 NGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAE  511 (840)
T ss_pred             ccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHH
Confidence            8888888877776654421110                              111111110     11124578899999


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048269          270 MLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK---PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCE  346 (465)
Q Consensus       270 ~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~  346 (465)
                      .|++.....-.-....|+. --.+...|++++|+..|-++..   .+..+.--+...|-...+...|++++....  .+.
T Consensus       512 ~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~--sli  588 (840)
T KOG2003|consen  512 FYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQAN--SLI  588 (840)
T ss_pred             HHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc--ccC
Confidence            9998876632222222332 2246788999999999988776   777777778888888899999999987665  455


Q ss_pred             CC-HHHHHHHHHHhhcccC-----------CCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 048269          347 PT-MHTYIMLLQGHLGKRG-----------RKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFL  414 (465)
Q Consensus       347 p~-~~~~~~ll~~~~~~~~-----------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll  414 (465)
                      |+ +....-+-..|-..++           -.-++.+..+...|...|....-+++|+.+|++..-  ++|+..-|..++
T Consensus       589 p~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmi  666 (840)
T KOG2003|consen  589 PNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMI  666 (840)
T ss_pred             CCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHH
Confidence            65 5555555555533333           455788899999999999999999999999999864  799999999998


Q ss_pred             HHHh-hccchHHHHHHHHHHHHc
Q 048269          415 HYYS-NEEGVVMFEEVGKKLREV  436 (465)
Q Consensus       415 ~~~~-~~g~~~~a~~~~~~~~~~  436 (465)
                      ..|. +.|++++|.++++...+.
T Consensus       667 asc~rrsgnyqka~d~yk~~hrk  689 (840)
T KOG2003|consen  667 ASCFRRSGNYQKAFDLYKDIHRK  689 (840)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHh
Confidence            8876 479999999999988765

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.61  E-value=7.7e-12  Score=105.37  Aligned_cols=301  Identities=11%  Similarity=0.074  Sum_probs=228.6

Q ss_pred             CCCCHHHHHHHHhcCCCChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC----hHH
Q 048269           35 FNLTHEFFLQICNNFPLSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVN----DKT  110 (465)
Q Consensus        35 ~~~~~~~~~~~l~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~  110 (465)
                      .+++.+.+..+=--+++++++|.+.|-.++..++.   +..+.-+|-+.|.+.|..+.|+.+...+.++--.+    ..+
T Consensus        33 ~~lsr~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~---t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lA  109 (389)
T COG2956          33 NRLSRDYVKGLNFLLSNQPDKAVDLFLEMLQEDPE---TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLA  109 (389)
T ss_pred             hhccHHHHhHHHHHhhcCcchHHHHHHHHHhcCch---hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHH
Confidence            44677777777656777999999999998554444   67777788999999999999999999887653322    235


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh-cCCCCC----HHhHHHHHH
Q 048269          111 FKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLS-EWIKPN----EIAYGWLIK  185 (465)
Q Consensus       111 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~-~~~~~~----~~~~~~li~  185 (465)
                      .-.+.+-|...|-++.|+.+|..+.+.+ ..-......|+..|-...+|++|++.-+++. .+-.+.    ...|.-|..
T Consensus       110 l~qL~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq  188 (389)
T COG2956         110 LQQLGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQ  188 (389)
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHH
Confidence            5667888999999999999999999865 4456677889999999999999999999887 332222    245667777


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChH
Q 048269          186 GYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKIS  265 (465)
Q Consensus       186 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~  265 (465)
                      .+....+++.|..++.+..+.. +-.+..--.+.+.+...|+++.|.+.++.+.+++..- -+.+...|..+|...|+.+
T Consensus       189 ~~~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~y-l~evl~~L~~~Y~~lg~~~  266 (389)
T COG2956         189 QALASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEY-LSEVLEMLYECYAQLGKPA  266 (389)
T ss_pred             HHhhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHH-HHHHHHHHHHHHHHhCCHH
Confidence            7778899999999999998864 2234444567788899999999999999999885444 4567888999999999999


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH-HHHHhcC-CCHhhHHHHHHHHHh---cCCHHHHHHHHHHH
Q 048269          266 QAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYK-VVEEIEK-PDISLYHGLIKGLLR---LRRAREATQVFREM  340 (465)
Q Consensus       266 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~-~~~~~~~-~~~~~~~~li~~~~~---~~~~~~a~~~~~~m  340 (465)
                      +....+..+.+....+  ..-..+........-.+.|.. +.+.+.. |+...+..+|..-..   .|...+-+.+++.|
T Consensus       267 ~~~~fL~~~~~~~~g~--~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~m  344 (389)
T COG2956         267 EGLNFLRRAMETNTGA--DAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDM  344 (389)
T ss_pred             HHHHHHHHHHHccCCc--cHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHH
Confidence            9999999998874433  333444444444444555554 4455555 999999999987554   35577778888888


Q ss_pred             HHc
Q 048269          341 IKR  343 (465)
Q Consensus       341 ~~~  343 (465)
                      +..
T Consensus       345 vge  347 (389)
T COG2956         345 VGE  347 (389)
T ss_pred             HHH
Confidence            754

>TIGR00540 hemY_coli hemY protein

Probab=99.61  E-value=3.8e-12  Score=119.34  Aligned_cols=289  Identities=11%  Similarity=-0.007  Sum_probs=195.9

Q ss_pred             HhcCCHHHHHHHHHHhhhCCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCH--HhHHHHHHHHHhcCCHHH
Q 048269          119 AEVRELKKMVNFFHIMNDCGCEYSL-EMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNE--IAYGWLIKGYCDVGDLIE  195 (465)
Q Consensus       119 ~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~li~~~~~~g~~~~  195 (465)
                      ...|+++.|.+.+....+.  .|+. ..+-....++.+.|+.+.|.+++.+..... |+.  .........+...|+++.
T Consensus        95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~-p~~~l~~~~~~a~l~l~~~~~~~  171 (409)
T TIGR00540        95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA-GNDNILVEIARTRILLAQNELHA  171 (409)
T ss_pred             HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CcCchHHHHHHHHHHHHCCCHHH
Confidence            4568888888888877665  3443 333444567777888888888888876322 332  234445777788888888


Q ss_pred             HHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchH-HHHHHHH---HhcCChHHHHHHH
Q 048269          196 ASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTY-RIVIDWM---CKRGKISQAYTML  271 (465)
Q Consensus       196 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~-~~li~~~---~~~~~~~~a~~~~  271 (465)
                      |...++.+.+.. +-+..++..+...+...|++++|.+.+..+.+.+..+  ...+ ..-..++   ...+..+...+.+
T Consensus       172 Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~--~~~~~~l~~~a~~~~l~~~~~~~~~~~L  248 (409)
T TIGR00540       172 ARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFD--DEEFADLEQKAEIGLLDEAMADEGIDGL  248 (409)
T ss_pred             HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence            888888888874 3356678888888888888988888888888876443  2223 2112222   2223333333455


Q ss_pred             HHHHHCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC--CCHhh---HHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048269          272 EEMFKRGI---EADNLTLSSIIYGLLARGRLREAYKVVEEIEK--PDISL---YHGLIKGLLRLRRAREATQVFREMIKR  343 (465)
Q Consensus       272 ~~m~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~---~~~li~~~~~~~~~~~a~~~~~~m~~~  343 (465)
                      ..+.+...   +.+...+..+...+...|+.++|.+++++..+  ||...   ...........++.+.+.+.++...+.
T Consensus       249 ~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~  328 (409)
T TIGR00540       249 LNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN  328 (409)
T ss_pred             HHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence            54444321   13677788888888888888888888888877  44432   111222233446777777777776643


Q ss_pred             CCCCCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhccch
Q 048269          344 GCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNEEGV  423 (465)
Q Consensus       344 ~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~  423 (465)
                        .|+... .                   ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.
T Consensus       329 --~p~~~~-~-------------------~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~  386 (409)
T TIGR00540       329 --VDDKPK-C-------------------CINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDK  386 (409)
T ss_pred             --CCCChh-H-------------------HHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCH
Confidence              455441 0                   223445677899999999999999644444689999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 048269          424 VMFEEVGKKLRE  435 (465)
Q Consensus       424 ~~a~~~~~~~~~  435 (465)
                      ++|.+++++-..
T Consensus       387 ~~A~~~~~~~l~  398 (409)
T TIGR00540       387 AEAAAMRQDSLG  398 (409)
T ss_pred             HHHHHHHHHHHH
Confidence            999999998654

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.59  E-value=6.2e-11  Score=113.76  Aligned_cols=309  Identities=11%  Similarity=0.004  Sum_probs=219.9

Q ss_pred             HHhhhhhCCCCCCHHHHHHHHhcCCCChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCC
Q 048269           26 LHSSLSSCNFNLTHEFFLQICNNFPLSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRL  105 (465)
Q Consensus        26 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  105 (465)
                      +..+|+.+|..+-+-+-...+.--..++..|+.+|..++...+...||+..-.  -..+.+.|+.+.|+..|+...+.++
T Consensus       153 F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgi--g~Cf~kl~~~~~a~~a~~ralqLdp  230 (1018)
T KOG2002|consen  153 FHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGI--GHCFWKLGMSEKALLAFERALQLDP  230 (1018)
T ss_pred             HHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchh--hhHHHhccchhhHHHHHHHHHhcCh
Confidence            66667766666444444444422233888999999998888888888875532  2567788999999999999988887


Q ss_pred             CChHHHHHHHHHHHhcC---CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcC---CCCCHHh
Q 048269          106 VNDKTFKIALMTLAEVR---ELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEW---IKPNEIA  179 (465)
Q Consensus       106 ~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~  179 (465)
                      .+..++..|...-....   .+..++..+...-... .-++.+.+.|..-|.-.|++..+..+...+...   -..-...
T Consensus       231 ~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes  309 (1018)
T KOG2002|consen  231 TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAES  309 (1018)
T ss_pred             hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHH
Confidence            55555555544333333   3556666666665544 567778888888888999999999998887721   1223445


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHH
Q 048269          180 YGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSI--DVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDW  257 (465)
Q Consensus       180 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~  257 (465)
                      |-.+.++|-..|++++|...|-+..+.  .++.  -.+--+...+.+.|+.+.+...|+.+.+.  .|.+..+...+...
T Consensus       310 ~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--~p~~~etm~iLG~L  385 (1018)
T KOG2002|consen  310 FYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--LPNNYETMKILGCL  385 (1018)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHh--CcchHHHHHHHHhH
Confidence            778889999999999999998887765  3443  34456778899999999999999998876  55467788887777


Q ss_pred             HHhcC----ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC--------CCHhhHHHHHHHHH
Q 048269          258 MCKRG----KISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK--------PDISLYHGLIKGLL  325 (465)
Q Consensus       258 ~~~~~----~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~li~~~~  325 (465)
                      |+..+    ..+.|..++.+..+.- +-|...|-.+...+....- ..++..+..+..        +.+...|.+.....
T Consensus       386 ya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~-~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf  463 (1018)
T KOG2002|consen  386 YAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDP-WASLDAYGNALDILESKGKQIPPEVLNNVASLHF  463 (1018)
T ss_pred             HHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHH
Confidence            77765    4566777777766653 3366677776666554433 333555554432        77788899999999


Q ss_pred             hcCCHHHHHHHHHHHHHc
Q 048269          326 RLRRAREATQVFREMIKR  343 (465)
Q Consensus       326 ~~~~~~~a~~~~~~m~~~  343 (465)
                      ..|++.+|...|......
T Consensus       464 ~~g~~~~A~~~f~~A~~~  481 (1018)
T KOG2002|consen  464 RLGNIEKALEHFKSALGK  481 (1018)
T ss_pred             HhcChHHHHHHHHHHhhh
Confidence            999999999999888754

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.57  E-value=2.3e-12  Score=118.73  Aligned_cols=278  Identities=14%  Similarity=0.019  Sum_probs=222.4

Q ss_pred             ChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCC---CChHHHHHHHHHHHhcCCHHHHH
Q 048269           52 SWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRL---VNDKTFKIALMTLAEVRELKKMV  128 (465)
Q Consensus        52 ~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~  128 (465)
                      ..+.|+..|......+.+   +..+...+.++|.+.+++++|.++|+.+.+..+   .+.++|.+.+..+-+.    -++
T Consensus       334 ~~~~A~~~~~klp~h~~n---t~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~L  406 (638)
T KOG1126|consen  334 NCREALNLFEKLPSHHYN---TGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VAL  406 (638)
T ss_pred             HHHHHHHHHHhhHHhcCC---chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHH
Confidence            567899999985333333   557778889999999999999999999988766   3667888888766432    233


Q ss_pred             HHHH-HhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 048269          129 NFFH-IMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEG  207 (465)
Q Consensus       129 ~~~~-~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g  207 (465)
                      ..+. .+.+.. +-.+.+|.++..+|+-+++.+.|++.|++...-.+....+|+.+..-+.....+|.|...|+....  
T Consensus       407 s~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--  483 (638)
T KOG1126|consen  407 SYLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--  483 (638)
T ss_pred             HHHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--
Confidence            3332 333322 567889999999999999999999999998854455789999999999999999999999998875  


Q ss_pred             CCCcHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 048269          208 FEPSIDVV---DKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNL  284 (465)
Q Consensus       208 ~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~  284 (465)
                        .|...|   .-+.-.|.+.++++.|+-.|+...+-  .|.+.+....+...+.+.|+.|+|++++++......+ |+.
T Consensus       484 --~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I--NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l  558 (638)
T KOG1126|consen  484 --VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI--NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPL  558 (638)
T ss_pred             --CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcC--CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-Cch
Confidence              355544   45667799999999999999998754  6667888888888999999999999999999877544 555


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHhcC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048269          285 TLSSIIYGLLARGRLREAYKVVEEIEK---PDISLYHGLIKGLLRLRRAREATQVFREMIKRG  344 (465)
Q Consensus       285 ~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~  344 (465)
                      .--.-+..+...+++++|+..++++++   .+...|..+...|.+.|+.+.|+.-|.-+.+..
T Consensus       559 ~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld  621 (638)
T KOG1126|consen  559 CKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD  621 (638)
T ss_pred             hHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence            555566778889999999999999998   455677888899999999999999998888543

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.56  E-value=3.6e-12  Score=117.44  Aligned_cols=279  Identities=14%  Similarity=0.027  Sum_probs=185.8

Q ss_pred             ChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC--CCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 048269           89 NIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCG--CEYSLEMLNKVVKTLCQRKLVVEAKYLI  166 (465)
Q Consensus        89 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~  166 (465)
                      +..+|..+|+.....-..+..+...+.++|...+++++|+++|+.+.+..  ..-+...|.+.+.-+-+    +-++.++
T Consensus       334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L  409 (638)
T KOG1126|consen  334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL  409 (638)
T ss_pred             HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence            45677888877555444455677778888888888888888888877642  11255667666654322    2233333


Q ss_pred             HH-hhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048269          167 LK-LSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEP-SIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMD  244 (465)
Q Consensus       167 ~~-m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~  244 (465)
                      .+ +....+-.+.+|.++..+|.-.++.+.|++.|++..+.  .| ...+|+.+..-+....++|.|...|+....  +.
T Consensus       410 aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~  485 (638)
T KOG1126|consen  410 AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VD  485 (638)
T ss_pred             HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CC
Confidence            33 22334556778888888888888888888888887765  34 567788877778888888888888887663  34


Q ss_pred             CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC---CCHhhHHHHH
Q 048269          245 DLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK---PDISLYHGLI  321 (465)
Q Consensus       245 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li  321 (465)
                      |.+-.+|.-+.-.|.+.++++.|+-.|++..+-+.. +......+...+.+.|+.++|+++++++..   .|+-.--...
T Consensus       486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~  564 (638)
T KOG1126|consen  486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA  564 (638)
T ss_pred             chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence            434455556667788888888888888877765432 455556666677778888888888887765   3444444445


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048269          322 KGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMN  400 (465)
Q Consensus       322 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  400 (465)
                      ..+...+++++|+..++++++  +.|+..+...++                      ...|.+.|+.+.|+.-|.-+.+
T Consensus       565 ~il~~~~~~~eal~~LEeLk~--~vP~es~v~~ll----------------------gki~k~~~~~~~Al~~f~~A~~  619 (638)
T KOG1126|consen  565 SILFSLGRYVEALQELEELKE--LVPQESSVFALL----------------------GKIYKRLGNTDLALLHFSWALD  619 (638)
T ss_pred             HHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHH----------------------HHHHHHHccchHHHHhhHHHhc
Confidence            556667777888888877774  456655443333                      3335777777777777777765

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.55  E-value=1.7e-10  Score=100.37  Aligned_cols=289  Identities=13%  Similarity=0.111  Sum_probs=231.4

Q ss_pred             cCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 048269           87 SRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLI  166 (465)
Q Consensus        87 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~  166 (465)
                      .|+|..|++...+-.+.+..+.-.|.....+--+.|+.+.+-.++.+..+..-.++...+-+..+.....|+.+.|..-+
T Consensus        97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v  176 (400)
T COG3071          97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV  176 (400)
T ss_pred             cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence            59999999999998777776777788888888999999999999999988644677788888889999999999999999


Q ss_pred             HHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcH-------HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048269          167 LKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSI-------DVVDKMIETFFKINKDDEAMKVFQMMR  239 (465)
Q Consensus       167 ~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~  239 (465)
                      +++...-+.++........+|.+.|++.....++..|.+.|+--+.       .+|..+++-....+..+.-...++...
T Consensus       177 ~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~p  256 (400)
T COG3071         177 DQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQP  256 (400)
T ss_pred             HHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhcc
Confidence            9988555778889999999999999999999999999999876554       467777777777777777677777765


Q ss_pred             HcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC---CCHhh
Q 048269          240 VKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK---PDISL  316 (465)
Q Consensus       240 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~  316 (465)
                      .+ ... ++..-.+++.-+.+.|+.+.|.++.++..+.+..|.   ... .-.+.+-++...-.+..+.-.+   .++..
T Consensus       257 r~-lr~-~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~-~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L  330 (400)
T COG3071         257 RK-LRN-DPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCR-LIPRLRPGDPEPLIKAAEKWLKQHPEDPLL  330 (400)
T ss_pred             HH-hhc-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHH-HHhhcCCCCchHHHHHHHHHHHhCCCChhH
Confidence            54 222 567788889999999999999999999998877655   111 2234566666666666655544   56688


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcCCHHHHHHHHH
Q 048269          317 YHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVE  396 (465)
Q Consensus       317 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~  396 (465)
                      +.+|...|.+.+.|.+|.+.|+...+  ..|+..+|+.+-.                       +|.+.|+..+|.++.+
T Consensus       331 ~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~-----------------------~~~~~g~~~~A~~~r~  385 (400)
T COG3071         331 LSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELAD-----------------------ALDQLGEPEEAEQVRR  385 (400)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHH-----------------------HHHHcCChHHHHHHHH
Confidence            89999999999999999999997774  4677666655544                       4599999999999999


Q ss_pred             HHHhCCCCCC
Q 048269          397 RVMNRGVEVP  406 (465)
Q Consensus       397 ~m~~~~~~p~  406 (465)
                      +....-..|+
T Consensus       386 e~L~~~~~~~  395 (400)
T COG3071         386 EALLLTRQPN  395 (400)
T ss_pred             HHHHHhcCCC
Confidence            8875434444

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.55  E-value=5.3e-11  Score=103.44  Aligned_cols=273  Identities=13%  Similarity=0.075  Sum_probs=163.6

Q ss_pred             CCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 048269          156 RKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVF  235 (465)
Q Consensus       156 ~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~  235 (465)
                      .|++.+|+++..+-.+.-+.....|..-..+.-+.||.+.+-.++.+..+.--.++....-+..+.....|+++.|..-+
T Consensus        97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v  176 (400)
T COG3071          97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV  176 (400)
T ss_pred             cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence            45666666665554422222233444444555555666666666666555422344445555555555666666666666


Q ss_pred             HHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHH
Q 048269          236 QMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADN-------LTLSSIIYGLLARGRLREAYKVVEE  308 (465)
Q Consensus       236 ~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~  308 (465)
                      +++.+.  .|.++........+|.+.|++.....++..|.+.|.-.|+       .+|+.+++-....+..+.-...++.
T Consensus       177 ~~ll~~--~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~  254 (400)
T COG3071         177 DQLLEM--TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN  254 (400)
T ss_pred             HHHHHh--CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence            555544  3334555566666666666666666666666655543332       2234444444444444444445555


Q ss_pred             hcC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccC-----------CCCCCCchHH
Q 048269          309 IEK---PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRG-----------RKGPDPLVNF  374 (465)
Q Consensus       309 ~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-----------~~~~~~~~~~  374 (465)
                      ...   .++..-.+++.-+.+.|+.++|.++..+..+.+..|+..++   +. +..-.+           ....+-++..
T Consensus       255 ~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~---~~-~l~~~d~~~l~k~~e~~l~~h~~~p~L  330 (400)
T COG3071         255 QPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRL---IP-RLRPGDPEPLIKAAEKWLKQHPEDPLL  330 (400)
T ss_pred             ccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHH---Hh-hcCCCCchHHHHHHHHHHHhCCCChhH
Confidence            544   44555555566666666666666666666655555541111   11 111111           2233344566


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhccchHHHHHHHHHHHHc
Q 048269          375 DTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNEEGVVMFEEVGKKLREV  436 (465)
Q Consensus       375 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  436 (465)
                      +.+|...|.+.+.|.+|.+.|+...+  ..|+..+|..+..++.+.|+.+.|.+..++....
T Consensus       331 ~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~  390 (400)
T COG3071         331 LSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLL  390 (400)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            78889999999999999999998886  6899999999999999999999999999987744

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.55  E-value=9.7e-11  Score=103.24  Aligned_cols=216  Identities=13%  Similarity=0.075  Sum_probs=155.7

Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHH
Q 048269          189 DVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAY  268 (465)
Q Consensus       189 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~  268 (465)
                      ..|++++|...|++...+.-.-....|| +.-.+-..|+.++|+++|-.+..  +...+..+...+...|....+..+|+
T Consensus       502 ~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~--il~nn~evl~qianiye~led~aqai  578 (840)
T KOG2003|consen  502 ANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHA--ILLNNAEVLVQIANIYELLEDPAQAI  578 (840)
T ss_pred             ecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHH--HHHhhHHHHHHHHHHHHHhhCHHHHH
Confidence            4577888888888877653222222232 22335667888888888877643  23336677777888888888888888


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 048269          269 TMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK---PDISLYHGLIKGLLRLRRAREATQVFREMIKRGC  345 (465)
Q Consensus       269 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~  345 (465)
                      +++-+.... ++.|+....-|...|-+.|+-..|.+..-+--.   -+..+..-|..-|....-+++++.+|++..  -+
T Consensus       579 e~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaa--li  655 (840)
T KOG2003|consen  579 ELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--LI  655 (840)
T ss_pred             HHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--hc
Confidence            888766544 555788888888888888888888887665554   566777777777888888888888888765  56


Q ss_pred             CCCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhccchHH
Q 048269          346 EPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNEEGVVM  425 (465)
Q Consensus       346 ~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~  425 (465)
                      .|+..-|..++..|                      +.+.|++++|.++++..... +.-|.....-|++.|...|..+ 
T Consensus       656 qp~~~kwqlmiasc----------------------~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~d-  711 (840)
T KOG2003|consen  656 QPNQSKWQLMIASC----------------------FRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLKD-  711 (840)
T ss_pred             CccHHHHHHHHHHH----------------------HHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccchh-
Confidence            88888888888777                      57899999999999999864 5557778888888887766432 


Q ss_pred             HHHHHHHHH
Q 048269          426 FEEVGKKLR  434 (465)
Q Consensus       426 a~~~~~~~~  434 (465)
                      +.++.+++.
T Consensus       712 ~key~~kle  720 (840)
T KOG2003|consen  712 AKEYADKLE  720 (840)
T ss_pred             HHHHHHHHH
Confidence            444444443

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.54  E-value=2.6e-09  Score=98.57  Aligned_cols=354  Identities=11%  Similarity=-0.023  Sum_probs=236.1

Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 048269           75 ITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLC  154 (465)
Q Consensus        75 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~  154 (465)
                      .+|+.-...|.+.+.++-|..+|....+-.+-....|......--..|..++...+|++.... ++-....|-....-+-
T Consensus       517 ~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w  595 (913)
T KOG0495|consen  517 STWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKW  595 (913)
T ss_pred             hHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHH
Confidence            445555555555555555666665555554444455555555555556666666666666553 2333344444445555


Q ss_pred             cCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 048269          155 QRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKV  234 (465)
Q Consensus       155 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~  234 (465)
                      ..|++..|..++.+...-.+.+...|..-++.-..+..++.|..+|.+....  .|+..+|..-+..---.++.++|.++
T Consensus       596 ~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rl  673 (913)
T KOG0495|consen  596 KAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRL  673 (913)
T ss_pred             hcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHH
Confidence            5677777777777766434556667777777777777777777777776654  46666666666666666777777777


Q ss_pred             HHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC---
Q 048269          235 FQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK---  311 (465)
Q Consensus       235 ~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---  311 (465)
                      +++..+.  .|.-...|-.+...+-+.++.+.|...|..-.+. ++-....|..|...--+.|.+-.|..+++...-   
T Consensus       674 lEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNP  750 (913)
T KOG0495|consen  674 LEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNP  750 (913)
T ss_pred             HHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCC
Confidence            7777654  4423445666667777777777777777654443 333455666777777777888888888887765   


Q ss_pred             CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccC-------CCCCCCchHHHHHHHHHHHh
Q 048269          312 PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRG-------RKGPDPLVNFDTIFVGGLVK  384 (465)
Q Consensus       312 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-------~~~~~~~~~~~~~li~~~~~  384 (465)
                      .+...|-..|..=.+.|+.+.|..+..+.++. ++.+...|..-|...-..+.       -+...-|++..-.....|..
T Consensus       751 k~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~  829 (913)
T KOG0495|consen  751 KNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWS  829 (913)
T ss_pred             CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHH
Confidence            56677888888888899999888888777653 33334444444433321111       34456677888888888999


Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCH-hhHHHHHHHHhhccchHHHHHHHHHHHHcC
Q 048269          385 AGKSLDAAKYVERVMNRGVEVPR-FDYNKFLHYYSNEEGVVMFEEVGKKLREVG  437 (465)
Q Consensus       385 ~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g  437 (465)
                      ..++++|.+.|.+...  +.||. .+|.-+..-+..+|.-+.-.+++++.....
T Consensus       830 e~k~~kar~Wf~Ravk--~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~E  881 (913)
T KOG0495|consen  830 EKKIEKAREWFERAVK--KDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAE  881 (913)
T ss_pred             HHHHHHHHHHHHHHHc--cCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence            9999999999999987  45654 488888888999999888899998888763

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.54  E-value=2.2e-10  Score=101.29  Aligned_cols=322  Identities=12%  Similarity=0.064  Sum_probs=199.6

Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHH--HHHH
Q 048269           73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEML--NKVV  150 (465)
Q Consensus        73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~ll  150 (465)
                      |+..+...--.+-+.|..+.|++.|......-+..+.+|..|...+..       ++....... |.+.|....  -.+.
T Consensus       163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~-------~e~~~~l~~-~l~~~~h~M~~~F~~  234 (559)
T KOG1155|consen  163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITD-------IEILSILVV-GLPSDMHWMKKFFLK  234 (559)
T ss_pred             hhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhch-------HHHHHHHHh-cCcccchHHHHHHHH
Confidence            444444444455555666666666666655555555555555444322       111111111 112111111  1233


Q ss_pred             HHHHcCCCHHHHHHHHHHhh-cCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----cHHHHHHHHHHHHhc
Q 048269          151 KTLCQRKLVVEAKYLILKLS-EWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEP----SIDVVDKMIETFFKI  225 (465)
Q Consensus       151 ~~~~~~~~~~~a~~~~~~m~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~----~~~~~~~li~~~~~~  225 (465)
                      .++-...+.+++.+-.+... .|++-+...-+....+.-...|++.|+.+|+++.++  .|    |..+|..++-.-...
T Consensus       235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~kn--DPYRl~dmdlySN~LYv~~~~  312 (559)
T KOG1155|consen  235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKN--DPYRLDDMDLYSNVLYVKNDK  312 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhc--CCCcchhHHHHhHHHHHHhhh
Confidence            44444455666666666555 555555555555555555667777777777777765  22    456666555432221


Q ss_pred             CCHH-HHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048269          226 NKDD-EAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYK  304 (465)
Q Consensus       226 g~~~-~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~  304 (465)
                      .+.. .|..+++ +  ...   -+.|+.++.+-|.-.++.++|..+|+...+.+.. ....|+.+.+-|....+...|..
T Consensus       313 skLs~LA~~v~~-i--dKy---R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~  385 (559)
T KOG1155|consen  313 SKLSYLAQNVSN-I--DKY---RPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIE  385 (559)
T ss_pred             HHHHHHHHHHHH-h--ccC---CccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHH
Confidence            1111 1222221 1  111   3456777777777777777777777777766432 45566667777777777777777


Q ss_pred             HHHHhcC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHH
Q 048269          305 VVEEIEK---PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGG  381 (465)
Q Consensus       305 ~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~  381 (465)
                      -++...+   .|...|-.+..+|.-.+...-|+-.|++...  ++|+                      |+..|.+|..+
T Consensus       386 sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPn----------------------DsRlw~aLG~C  441 (559)
T KOG1155|consen  386 SYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPN----------------------DSRLWVALGEC  441 (559)
T ss_pred             HHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCC----------------------chHHHHHHHHH
Confidence            7777776   5666777777777777777777777777763  3454                      45567777888


Q ss_pred             HHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhccchHHHHHHHHHHHHc
Q 048269          382 LVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNEEGVVMFEEVGKKLREV  436 (465)
Q Consensus       382 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  436 (465)
                      |.+.++.++|++.|++....| ..+...+..|...+.+.++.++|..++++.++.
T Consensus       442 Y~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~  495 (559)
T KOG1155|consen  442 YEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEV  495 (559)
T ss_pred             HHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            999999999999999999865 346678999999999999999999999988874

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.51  E-value=1.3e-08  Score=94.02  Aligned_cols=371  Identities=9%  Similarity=0.008  Sum_probs=265.6

Q ss_pred             ChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 048269           52 SWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFF  131 (465)
Q Consensus        52 ~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  131 (465)
                      +++.|..++..+.+   ..+.+...|.    +|.+..-++.|.++++...+.=+.+..+|.+....--.+|+.+...++.
T Consensus       391 ~~~darilL~rAve---ccp~s~dLwl----AlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii  463 (913)
T KOG0495|consen  391 EPEDARILLERAVE---CCPQSMDLWL----ALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKII  463 (913)
T ss_pred             ChHHHHHHHHHHHH---hccchHHHHH----HHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHH
Confidence            44457777776622   1222444444    4556667788888888887665567778887777777888888888877


Q ss_pred             HHh----hhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh-cCC--CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048269          132 HIM----NDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLS-EWI--KPNEIAYGWLIKGYCDVGDLIEASKIWNLMT  204 (465)
Q Consensus       132 ~~~----~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~-~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  204 (465)
                      .+-    ...|+..+...|-.=...|-..|..-.+..+..... -|+  ..-..||..-...|.+.+.++-|..+|....
T Consensus       464 ~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~al  543 (913)
T KOG0495|consen  464 DRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHAL  543 (913)
T ss_pred             HHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHH
Confidence            643    447778888888777777877888777777777765 332  2345677788888888888888888888887


Q ss_pred             HCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 048269          205 DEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNL  284 (465)
Q Consensus       205 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~  284 (465)
                      +- ++-+...|......--..|..+....+|++....  .|.....|-.....+-..|+...|..++....+.... +..
T Consensus       544 qv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~--~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-see  619 (913)
T KOG0495|consen  544 QV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ--CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEE  619 (913)
T ss_pred             hh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHH
Confidence            65 2345566766666666678888888888888876  4445666777777777888888888888888776443 677


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHhcC--CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc
Q 048269          285 TLSSIIYGLLARGRLREAYKVVEEIEK--PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGK  362 (465)
Q Consensus       285 ~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~  362 (465)
                      .+-.-+........++.|..+|.+...  ++...|..-+..---.++.++|.+++++.++.  -|+-.-+..++.-....
T Consensus       620 iwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~  697 (913)
T KOG0495|consen  620 IWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQ  697 (913)
T ss_pred             HHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHH
Confidence            777778888888888888888888776  77777776666666678888888888887754  56655555554433322


Q ss_pred             cC------------CCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhccchHHHHHHH
Q 048269          363 RG------------RKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNEEGVVMFEEVG  430 (465)
Q Consensus       363 ~~------------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~  430 (465)
                      .+            .+..+-.+..|-.|...=-+.|..-.|..++++..-.+ .-+...|...|+.-.+.|+.+.|..++
T Consensus       698 ~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lm  776 (913)
T KOG0495|consen  698 MENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLM  776 (913)
T ss_pred             HHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHH
Confidence            22            44455556777777777778888888888888887542 235568888888888888888888887


Q ss_pred             HHHHHc
Q 048269          431 KKLREV  436 (465)
Q Consensus       431 ~~~~~~  436 (465)
                      -+.++.
T Consensus       777 akALQe  782 (913)
T KOG0495|consen  777 AKALQE  782 (913)
T ss_pred             HHHHHh
Confidence            776654

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.50  E-value=2e-10  Score=101.63  Aligned_cols=305  Identities=10%  Similarity=0.003  Sum_probs=218.2

Q ss_pred             HHHhcCChhHHHHHHHHHhhCCCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC--CCCHHHHHHHHHHHHcCCCH
Q 048269           83 IIGKSRNIDLFWETLQEMGRRRLVND-KTFKIALMTLAEVRELKKMVNFFHIMNDCGC--EYSLEMLNKVVKTLCQRKLV  159 (465)
Q Consensus        83 ~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~  159 (465)
                      ++.+..+.+++..=.+.....|.+.. ..-+....+.-...+++.|+.+|+++.+...  --|..+|..++-.-  ..+ 
T Consensus       236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~--~~~-  312 (559)
T KOG1155|consen  236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVK--NDK-  312 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHH--hhh-
Confidence            34444456666666666666776543 3334444555667788888888888887631  12566776665432  221 


Q ss_pred             HHHHHHHHHhh-cCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048269          160 VEAKYLILKLS-EWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMM  238 (465)
Q Consensus       160 ~~a~~~~~~m~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  238 (465)
                       ..+.++.+-. .-.+-.+.|+..+.+.|+-.++.++|...|+...+.+ +-....|+.+..-|....+...|++.++..
T Consensus       313 -skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrA  390 (559)
T KOG1155|consen  313 -SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRA  390 (559)
T ss_pred             -HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence             1122222222 1123345678888899999999999999999999875 335678999999999999999999999999


Q ss_pred             HHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC---CCHh
Q 048269          239 RVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK---PDIS  315 (465)
Q Consensus       239 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~  315 (465)
                      ++-  .|.|-..|-.|..+|.-.+.+.=|+-+|++..... +.|...|.+|..+|.+.++.++|++.|.....   .+..
T Consensus       391 vdi--~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~  467 (559)
T KOG1155|consen  391 VDI--NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGS  467 (559)
T ss_pred             Hhc--CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchH
Confidence            855  66699999999999999999999999999988763 34899999999999999999999999999887   4447


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcCCHHHH
Q 048269          316 LYHGLIKGLLRLRRAREATQVFREMIKR----GCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDA  391 (465)
Q Consensus       316 ~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A  391 (465)
                      .+..+...|-+.++.++|...|...++.    |..-+......+                     -|...+.+.+++++|
T Consensus       468 ~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~---------------------fLA~~f~k~~~~~~A  526 (559)
T KOG1155|consen  468 ALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARL---------------------FLAEYFKKMKDFDEA  526 (559)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHH---------------------HHHHHHHhhcchHHH
Confidence            8999999999999999999999887753    322221111111                     133446888999998


Q ss_pred             HHHHHHHHhCCCCCCHhhHHHHHHHHh
Q 048269          392 AKYVERVMNRGVEVPRFDYNKFLHYYS  418 (465)
Q Consensus       392 ~~~~~~m~~~~~~p~~~~~~~ll~~~~  418 (465)
                      ..+.......  .+...--+.|++.+.
T Consensus       527 s~Ya~~~~~~--~~e~eeak~LlReir  551 (559)
T KOG1155|consen  527 SYYATLVLKG--ETECEEAKALLREIR  551 (559)
T ss_pred             HHHHHHHhcC--CchHHHHHHHHHHHH
Confidence            8877666542  333333444444443

>PRK12370 invasion protein regulator; Provisional

Probab=99.49  E-value=3.6e-11  Score=117.10  Aligned_cols=182  Identities=9%  Similarity=-0.036  Sum_probs=84.6

Q ss_pred             hhHHHHHHHHHhhCCCCChHHHHHHHHHHHh---------cCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHH
Q 048269           90 IDLFWETLQEMGRRRLVNDKTFKIALMTLAE---------VRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVV  160 (465)
Q Consensus        90 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~  160 (465)
                      +++|.+.|++..+.++.+...|..+..++..         .+++++|...+++..+.+ +-+...+..+..++...|+++
T Consensus       277 ~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~  355 (553)
T PRK12370        277 LQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYI  355 (553)
T ss_pred             HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHH
Confidence            4455555555555444444444443333221         122455555555555443 334444444555555555555


Q ss_pred             HHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048269          161 EAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPS-IDVVDKMIETFFKINKDDEAMKVFQMMR  239 (465)
Q Consensus       161 ~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~  239 (465)
                      +|...|++.....+.+...+..+...+...|++++|...+++..+..  |+ ...+..++..+...|++++|.+.+++..
T Consensus       356 ~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l  433 (553)
T PRK12370        356 VGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGITKLWITYYHTGIDDAIRLGDELR  433 (553)
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            55555555543333444455555555555555555555555555442  22 1122222333444455555555555544


Q ss_pred             HcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 048269          240 VKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMF  275 (465)
Q Consensus       240 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  275 (465)
                      ... .|.++..+..+..++...|+.++|...+.++.
T Consensus       434 ~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~  468 (553)
T PRK12370        434 SQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEIS  468 (553)
T ss_pred             Hhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhh
Confidence            331 12123334444455555555555555555543

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.49  E-value=4.6e-11  Score=103.57  Aligned_cols=200  Identities=12%  Similarity=0.027  Sum_probs=139.9

Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 048269           73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKT  152 (465)
Q Consensus        73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~  152 (465)
                      ....+..+...+...|++++|.+.+++..+..+.+...+..+...+...|++++|.+.++...+.. +.+...+..+...
T Consensus        30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~  108 (234)
T TIGR02521        30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF  108 (234)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence            456677778888888888888888888877766666777777788888888888888888777654 4455666777777


Q ss_pred             HHcCCCHHHHHHHHHHhhc--CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHH
Q 048269          153 LCQRKLVVEAKYLILKLSE--WIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDE  230 (465)
Q Consensus       153 ~~~~~~~~~a~~~~~~m~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~  230 (465)
                      +...|++++|.+.+++...  ..+.....+..+...+...|++++|...+.+..+.. +.+...+..+...+...|++++
T Consensus       109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~  187 (234)
T TIGR02521       109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD  187 (234)
T ss_pred             HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence            7778888888888887762  122334456666677777777777777777776653 2245566677777777777777


Q ss_pred             HHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048269          231 AMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFK  276 (465)
Q Consensus       231 A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  276 (465)
                      |.+.+++....  .|.+...+..+...+...|+.+.|..+.+.+..
T Consensus       188 A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  231 (234)
T TIGR02521       188 ARAYLERYQQT--YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK  231 (234)
T ss_pred             HHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            77777777655  232555566666667777777777777666543

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.48  E-value=3.8e-09  Score=93.96  Aligned_cols=377  Identities=9%  Similarity=0.035  Sum_probs=240.3

Q ss_pred             ChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 048269           52 SWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFF  131 (465)
Q Consensus        52 ~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  131 (465)
                      +...|..+|+.++..+..   +...|-..+.+=.++.++..|..+++.....-+--...|--.+..--..|+...|.++|
T Consensus        88 e~~RARSv~ERALdvd~r---~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqif  164 (677)
T KOG1915|consen   88 EIQRARSVFERALDVDYR---NITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIF  164 (677)
T ss_pred             HHHHHHHHHHHHHhcccc---cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHH
Confidence            456799999998555543   88888889999999999999999999887654422234555555555678999999999


Q ss_pred             HHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CC-C
Q 048269          132 HIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDE-GF-E  209 (465)
Q Consensus       132 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~-~  209 (465)
                      +.-.+.  .|+...|++.+..=.+.+.++.|..+|++..- +.|++.+|--..+-=.+.|+...+.++|....+. |- .
T Consensus       165 erW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~-~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~  241 (677)
T KOG1915|consen  165 ERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL-VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDE  241 (677)
T ss_pred             HHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe-ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHH
Confidence            988874  79999999999999999999999999999872 2589999888888888889999999888887763 10 1


Q ss_pred             CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------------------------------------------CCCCCC
Q 048269          210 PSIDVVDKMIETFFKINKDDEAMKVFQMMRVK------------------------------------------RMDDLG  247 (465)
Q Consensus       210 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------------------------------------------~~~~~~  247 (465)
                      .+...+.+....=.++..++.|.-+|.-..+.                                          .-.|.|
T Consensus       242 ~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~n  321 (677)
T KOG1915|consen  242 EAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYN  321 (677)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCC
Confidence            12223333333223334444444444433322                                          012335


Q ss_pred             cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-H------HHHH---HHHHHHhcCCHHHHHHHHHHhcC---CCH
Q 048269          248 LSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADN-L------TLSS---IIYGLLARGRLREAYKVVEEIEK---PDI  314 (465)
Q Consensus       248 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~------~~~~---li~~~~~~~~~~~a~~~~~~~~~---~~~  314 (465)
                      -.+|--.++.-...|+.+...++|+..+.. ++|-. .      .|..   .+-.-....+.+.+.++++...+   ...
T Consensus       322 YDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkk  400 (677)
T KOG1915|consen  322 YDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKK  400 (677)
T ss_pred             chHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCccc
Confidence            555666666666667777777777776654 33311 1      1111   11111245667777777766665   233


Q ss_pred             hhHHHHHHHH----HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccC-----------CCCCCCchHHHHHHH
Q 048269          315 SLYHGLIKGL----LRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRG-----------RKGPDPLVNFDTIFV  379 (465)
Q Consensus       315 ~~~~~li~~~----~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-----------~~~~~~~~~~~~~li  379 (465)
                      .||..+--.|    .++.+...|.+++...+  |..|...+|...|..-.....           -.-.+-|-.+|....
T Consensus       401 FtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kya  478 (677)
T KOG1915|consen  401 FTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYA  478 (677)
T ss_pred             chHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHH
Confidence            4444433332    35566777777777666  667777666655544322222           112233445666666


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCC-CCCCHhhHHHHHHHHhhccchHHHHHHHHHHHHcC
Q 048269          380 GGLVKAGKSLDAAKYVERVMNRG-VEVPRFDYNKFLHYYSNEEGVVMFEEVGKKLREVG  437 (465)
Q Consensus       380 ~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g  437 (465)
                      ..=...|+++.|..+|+-+++.. +......|.+.|.--...|.++.|..+++++++..
T Consensus       479 ElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt  537 (677)
T KOG1915|consen  479 ELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT  537 (677)
T ss_pred             HHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence            66667777777777777776532 11223355566665566788888888888877764

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.46  E-value=1.7e-10  Score=104.49  Aligned_cols=286  Identities=12%  Similarity=-0.037  Sum_probs=236.9

Q ss_pred             CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHH
Q 048269           69 CFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNK  148 (465)
Q Consensus        69 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  148 (465)
                      +...|+.....-.+.+...+++.+..++++...+..++....+..-|.++...|+..+-..+=.++.+.- |-.+.+|-+
T Consensus       239 ~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~a  317 (611)
T KOG1173|consen  239 GLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFA  317 (611)
T ss_pred             hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhh
Confidence            4556788888888999999999999999999999999877788888889999999988888888888763 667888999


Q ss_pred             HHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCH
Q 048269          149 VVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKD  228 (465)
Q Consensus       149 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~  228 (465)
                      +.--|.-.|+.++|.++|.+...-.+.-...|-.+...|+-.|..+.|+..+....+. ++-..-.+.-+.--|.+.++.
T Consensus       318 Vg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~  396 (611)
T KOG1173|consen  318 VGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNL  396 (611)
T ss_pred             HHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccH
Confidence            9988888899999999999977322444568999999999999999999999887663 111112223344457889999


Q ss_pred             HHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHC----C--CCCCHHHHHHHHHHHHhcCCHHHH
Q 048269          229 DEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKR----G--IEADNLTLSSIIYGLLARGRLREA  302 (465)
Q Consensus       229 ~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~--~~~~~~~~~~li~~~~~~~~~~~a  302 (465)
                      +.|.++|.+..  ++-|.|+...+-+.-.....+.+.+|..+|+.....    +  ......+++.|..+|.+.+++++|
T Consensus       397 kLAe~Ff~~A~--ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA  474 (611)
T KOG1173|consen  397 KLAEKFFKQAL--AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA  474 (611)
T ss_pred             HHHHHHHHHHH--hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH
Confidence            99999999886  557878999999888888899999999999887621    1  112456688999999999999999


Q ss_pred             HHHHHHhcC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhh
Q 048269          303 YKVVEEIEK---PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHL  360 (465)
Q Consensus       303 ~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~  360 (465)
                      +..+++...   .+..++.++.-.|...|+++.|.+.|.+.+  .+.|+..+...++..+.
T Consensus       475 I~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~ai  533 (611)
T KOG1173|consen  475 IDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLAI  533 (611)
T ss_pred             HHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHHH
Confidence            999998876   788999999999999999999999999998  78999988888887663

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.45  E-value=6.6e-11  Score=112.39  Aligned_cols=85  Identities=13%  Similarity=0.155  Sum_probs=71.3

Q ss_pred             CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 048269          209 EPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSS  288 (465)
Q Consensus       209 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~  288 (465)
                      .|++.+|.+++.+-.-+|+.+.|..++.+|.+.|.+. +.+-|-.++-+   .++...+..++.-|.+.|+.|+..|+..
T Consensus       201 ~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpi-r~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~ad  276 (1088)
T KOG4318|consen  201 APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPI-RAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQAD  276 (1088)
T ss_pred             CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCc-ccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHH
Confidence            4899999999999999999999999999999999887 66655555544   7888899999999999999999999877


Q ss_pred             HHHHHHhcC
Q 048269          289 IIYGLLARG  297 (465)
Q Consensus       289 li~~~~~~~  297 (465)
                      .+-.+.+.|
T Consensus       277 yvip~l~N~  285 (1088)
T KOG4318|consen  277 YVIPQLSNG  285 (1088)
T ss_pred             HHHhhhcch
Confidence            666655543

>PRK12370 invasion protein regulator; Provisional

Probab=99.45  E-value=3.1e-10  Score=110.62  Aligned_cols=249  Identities=15%  Similarity=0.063  Sum_probs=164.9

Q ss_pred             CCChHHHHHHHHHHHh-----cCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH---------cCCCHHHHHHHHHHhh
Q 048269          105 LVNDKTFKIALMTLAE-----VRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLC---------QRKLVVEAKYLILKLS  170 (465)
Q Consensus       105 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~---------~~~~~~~a~~~~~~m~  170 (465)
                      +.+...|...+++-..     .+.+++|+..|++..+.. +-+...|..+..++.         ..+++++|...+++..
T Consensus       253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al  331 (553)
T PRK12370        253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT  331 (553)
T ss_pred             CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence            3455556555555322     134678888888888764 334555655554443         2345788888888887


Q ss_pred             cCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcch
Q 048269          171 EWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLST  250 (465)
Q Consensus       171 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~  250 (465)
                      .-.+.+..++..+...+...|++++|...|++..+.+ +.+...+..+..++...|++++|...+++..+.  .|.+...
T Consensus       332 ~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~  408 (553)
T PRK12370        332 ELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAA  408 (553)
T ss_pred             hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhh
Confidence            5556778888888888888888999999888888764 334667778888888889999999888888766  4423334


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC--CC-HhhHHHHHHHHHhc
Q 048269          251 YRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK--PD-ISLYHGLIKGLLRL  327 (465)
Q Consensus       251 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~  327 (465)
                      +..++..+...|++++|...++++.....+-++..+..+..++...|+.++|...+.++..  |+ ....+.+...|+..
T Consensus       409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~  488 (553)
T PRK12370        409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQN  488 (553)
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhcc
Confidence            4445555667788888888888877653222455566777788888999998888888766  33 23344445556666


Q ss_pred             CCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHh
Q 048269          328 RRAREATQVFREMIKR-GCEPTMHTYIMLLQGH  359 (465)
Q Consensus       328 ~~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~  359 (465)
                      |  ++|...++.+.+. ...+....+..++.++
T Consensus       489 g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~  519 (553)
T PRK12370        489 S--ERALPTIREFLESEQRIDNNPGLLPLVLVA  519 (553)
T ss_pred             H--HHHHHHHHHHHHHhhHhhcCchHHHHHHHH
Confidence            6  4777767666543 2333333334444443

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.43  E-value=1.9e-10  Score=99.69  Aligned_cols=198  Identities=12%  Similarity=-0.013  Sum_probs=134.6

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHH
Q 048269          108 DKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGY  187 (465)
Q Consensus       108 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~  187 (465)
                      ...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++.....+.+...+..+...+
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  109 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL  109 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence            4566677777788888888888888777653 445666777777777788888888888777643455666777777777


Q ss_pred             HhcCCHHHHHHHHHHHHHCCC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHH
Q 048269          188 CDVGDLIEASKIWNLMTDEGF-EPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQ  266 (465)
Q Consensus       188 ~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~  266 (465)
                      ...|++++|.+.++...+... ......+..+..++...|++++|.+.+++....  .|.+...+..+...+...|++++
T Consensus       110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~  187 (234)
T TIGR02521       110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI--DPQRPESLLELAELYYLRGQYKD  187 (234)
T ss_pred             HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCChHHHHHHHHHHHHcCCHHH
Confidence            777888888888877766422 123445666677777777777777777777654  33245566677777777777777


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 048269          267 AYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEI  309 (465)
Q Consensus       267 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~  309 (465)
                      |...+++.... .+.+...+..+...+...|+.++|..+.+.+
T Consensus       188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  229 (234)
T TIGR02521       188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQL  229 (234)
T ss_pred             HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            77777776665 2334455555566666667777666665544

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.42  E-value=1.1e-11  Score=117.51  Aligned_cols=251  Identities=12%  Similarity=0.136  Sum_probs=134.6

Q ss_pred             HHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh-cCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 048269          130 FFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLS-EWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGF  208 (465)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~  208 (465)
                      ++-.+...|+.|+..||..+|.-||..|+++.|- +|.-|. ...+.+...|+.++.+....++.+.+.           
T Consensus        12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------   79 (1088)
T KOG4318|consen   12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------   79 (1088)
T ss_pred             HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence            3344455556666666666666666666665555 555555 555555555666665555555554443           


Q ss_pred             CCcHHHHHHHHHHHHhcCCHHH---HHHHHHHHH----HcCCC-------------CCCcchHHHHHHHHHhcCChHHHH
Q 048269          209 EPSIDVVDKMIETFFKINKDDE---AMKVFQMMR----VKRMD-------------DLGLSTYRIVIDWMCKRGKISQAY  268 (465)
Q Consensus       209 ~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~----~~~~~-------------~~~~~~~~~li~~~~~~~~~~~a~  268 (465)
                      .|...+|+.|..+|...|+...   +.+-+..+.    ..|+.             |.....-...+......|.++.+.
T Consensus        80 ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqll  159 (1088)
T KOG4318|consen   80 EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLL  159 (1088)
T ss_pred             CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHH
Confidence            3555566666666666655433   111111111    11111             101111222233334445555555


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHhcC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048269          269 TMLEEMFKRGIEADNLTLSSIIYGLLAR-GRLREAYKVVEEIEK-PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCE  346 (465)
Q Consensus       269 ~~~~~m~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~  346 (465)
                      +++..+-.....- +...  +++-+... ..+++-........+ +++.+|.+++.+-...|+.+.|..++.+|.+.|++
T Consensus       160 kll~~~Pvsa~~~-p~~v--fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfp  236 (1088)
T KOG4318|consen  160 KLLAKVPVSAWNA-PFQV--FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFP  236 (1088)
T ss_pred             HHHhhCCcccccc-hHHH--HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCC
Confidence            5554443221110 1111  13322222 233444444444444 88888888888888888888888888888888888


Q ss_pred             CCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhcc
Q 048269          347 PTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNEE  421 (465)
Q Consensus       347 p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g  421 (465)
                      .+..-|..++-+                          .++...+..+++-|.+.|+.|+..|+...+..+...|
T Consensus       237 ir~HyFwpLl~g--------------------------~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~  285 (1088)
T KOG4318|consen  237 IRAHYFWPLLLG--------------------------INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNG  285 (1088)
T ss_pred             cccccchhhhhc--------------------------CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcch
Confidence            877777666543                          3556666666666666666666666666665555533

>PF13041 PPR_2: PPR repeat family

Probab=99.40  E-value=1.1e-12  Score=82.18  Aligned_cols=50  Identities=32%  Similarity=0.643  Sum_probs=39.6

Q ss_pred             CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHh
Q 048269          175 PNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFK  224 (465)
Q Consensus       175 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~  224 (465)
                      ||..+||++|++|++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            67778888888888888888888888888888888888888888877764

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.38  E-value=8.4e-09  Score=97.43  Aligned_cols=300  Identities=14%  Similarity=0.091  Sum_probs=206.1

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcC--
Q 048269           79 RMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQR--  156 (465)
Q Consensus        79 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--  156 (465)
                      -....+...|++++|++.++.-...-+............+.+.|+.++|..+|..+.+.+ +.|..-|..+..+..-.  
T Consensus         9 Y~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~   87 (517)
T PF12569_consen    9 YKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQ   87 (517)
T ss_pred             HHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcc
Confidence            345567889999999999987554433445677888899999999999999999999986 34444445555555222  


Q ss_pred             ---CCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 048269          157 ---KLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDL-IEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAM  232 (465)
Q Consensus       157 ---~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~  232 (465)
                         .+.+...++|+++.... |.......+.-.+.....+ ..+...+..+...|+++   +|+.+-..|....+.+-..
T Consensus        88 ~~~~~~~~~~~~y~~l~~~y-p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~  163 (517)
T PF12569_consen   88 LSDEDVEKLLELYDELAEKY-PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIE  163 (517)
T ss_pred             cccccHHHHHHHHHHHHHhC-ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHH
Confidence               35777888898887333 3333333332222222233 34556677777788653   4566666666666666666


Q ss_pred             HHHHHHHHc----C---------CCCCCc--chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhc
Q 048269          233 KVFQMMRVK----R---------MDDLGL--STYRIVIDWMCKRGKISQAYTMLEEMFKRGIEAD-NLTLSSIIYGLLAR  296 (465)
Q Consensus       233 ~~~~~m~~~----~---------~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~  296 (465)
                      +++..+...    +         ..|++.  .++.-+...|...|++++|+.++++.++.  .|+ +..|..-.+.+-+.
T Consensus       164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~  241 (517)
T PF12569_consen  164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHA  241 (517)
T ss_pred             HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHC
Confidence            666665432    1         122233  24466677888999999999999999987  344 77888888999999


Q ss_pred             CCHHHHHHHHHHhcC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccCCCCCCCchH
Q 048269          297 GRLREAYKVVEEIEK---PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVN  373 (465)
Q Consensus       297 ~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~  373 (465)
                      |++.+|.+.++....   .|-..-+.....+.+.|+.++|.+++...-+.+..|-.  ...-+++.             -
T Consensus       242 G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~--~L~~mQc~-------------W  306 (517)
T PF12569_consen  242 GDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLS--NLNDMQCM-------------W  306 (517)
T ss_pred             CCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCccc--CHHHHHHH-------------H
Confidence            999999999999888   55566667788889999999999999998776653322  11122221             0


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048269          374 FDTIFVGGLVKAGKSLDAAKYVERVMN  400 (465)
Q Consensus       374 ~~~~li~~~~~~g~~~~A~~~~~~m~~  400 (465)
                      .......+|.+.|++..|++.|....+
T Consensus       307 f~~e~a~a~~r~~~~~~ALk~~~~v~k  333 (517)
T PF12569_consen  307 FETECAEAYLRQGDYGLALKRFHAVLK  333 (517)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            113456788999999999887776653

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF13041 PPR_2: PPR repeat family

Probab=99.37  E-value=2e-12  Score=81.07  Aligned_cols=50  Identities=26%  Similarity=0.413  Sum_probs=48.0

Q ss_pred             CchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhh
Q 048269          370 PLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSN  419 (465)
Q Consensus       370 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~  419 (465)
                      ||..+||++|++|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            78899999999999999999999999999999999999999999999975

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.37  E-value=2.5e-10  Score=96.52  Aligned_cols=236  Identities=7%  Similarity=-0.063  Sum_probs=197.8

Q ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHH
Q 048269          107 NDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKG  186 (465)
Q Consensus       107 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~  186 (465)
                      ++.=-+.+.++|.+.|.+.+|.+.|+.-.+.  .|-+.||..|-++|.+..+.+.|+.++.+-...++-|+....-+.+.
T Consensus       222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi  299 (478)
T KOG1129|consen  222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARI  299 (478)
T ss_pred             hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHH
Confidence            3333467889999999999999999988876  67888888899999999999999999999887778888878888899


Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHH
Q 048269          187 YCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQ  266 (465)
Q Consensus       187 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~  266 (465)
                      +-..++.++|.++|+...+.. +.++.....+...|.-.++++-|+.+|+.+.+.|+.  ++..|+.+.-+|.-.+++|-
T Consensus       300 ~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~--speLf~NigLCC~yaqQ~D~  376 (478)
T KOG1129|consen  300 HEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ--SPELFCNIGLCCLYAQQIDL  376 (478)
T ss_pred             HHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC--ChHHHhhHHHHHHhhcchhh
Confidence            999999999999999988763 346667777788888999999999999999999887  78899999999999999999


Q ss_pred             HHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhcC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048269          267 AYTMLEEMFKRGIEAD--NLTLSSIIYGLLARGRLREAYKVVEEIEK---PDISLYHGLIKGLLRLRRAREATQVFREMI  341 (465)
Q Consensus       267 a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  341 (465)
                      ++..|......-..|+  ..+|-.+-......|++..|.+.|+-...   .+...+|.|.-.-.+.|++++|..++....
T Consensus       377 ~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~  456 (478)
T KOG1129|consen  377 VLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAK  456 (478)
T ss_pred             hHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence            9999988876544444  33455666667788999999999998877   455678888888889999999999999887


Q ss_pred             HcCCCCCH
Q 048269          342 KRGCEPTM  349 (465)
Q Consensus       342 ~~~~~p~~  349 (465)
                      .  +.|+.
T Consensus       457 s--~~P~m  462 (478)
T KOG1129|consen  457 S--VMPDM  462 (478)
T ss_pred             h--hCccc
Confidence            3  45654

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.35  E-value=1.2e-08  Score=91.10  Aligned_cols=354  Identities=10%  Similarity=0.034  Sum_probs=238.4

Q ss_pred             ChhHHHHHHHHHhhcCCCCCCC-HHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHH-
Q 048269           52 SWRPVYLFFQYTQKAQPCFAHN-SITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVN-  129 (465)
Q Consensus        52 ~~~~a~~~f~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~-  129 (465)
                      .++.|+.++.|++...    || +..|.....+|...|+|++..+--....+.++.-..++..-.+++-..|++.+|+. 
T Consensus       130 kY~eAIkyY~~AI~l~----p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D  205 (606)
T KOG0547|consen  130 KYDEAIKYYTQAIELC----PDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFD  205 (606)
T ss_pred             cHHHHHHHHHHHHhcC----CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHh
Confidence            6789999999995544    56 88899999999999999998888777776655333344444455555555554433 


Q ss_pred             ---------------------HHHH---------hhhCC--CCCCHHHHHHHHHHHHcC--------C------------
Q 048269          130 ---------------------FFHI---------MNDCG--CEYSLEMLNKVVKTLCQR--------K------------  157 (465)
Q Consensus       130 ---------------------~~~~---------~~~~~--~~~~~~~~~~ll~~~~~~--------~------------  157 (465)
                                           +++.         +.+.+  +-|+....++....+...        +            
T Consensus       206 ~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~  285 (606)
T KOG0547|consen  206 VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALE  285 (606)
T ss_pred             hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHHHH
Confidence                                 2211         11111  234554444444433211        1            


Q ss_pred             --------CHHHHHHHHHHhh----cCCCCC---------HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHH
Q 048269          158 --------LVVEAKYLILKLS----EWIKPN---------EIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVD  216 (465)
Q Consensus       158 --------~~~~a~~~~~~m~----~~~~~~---------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~  216 (465)
                              .+.+|...+.+-.    .....+         ..+...-..-+.-.|+...|..-|+..++....+ ...|-
T Consensus       286 ~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~-~~lyI  364 (606)
T KOG0547|consen  286 ALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAF-NSLYI  364 (606)
T ss_pred             HHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCccc-chHHH
Confidence                    1112222222211    001111         1111111222344588888999999988864332 23377


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048269          217 KMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLAR  296 (465)
Q Consensus       217 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~  296 (465)
                      -+..+|....+.++..+.|+...+.  .|.++.+|..-...+.-.++++.|..=|++.+..... +...|.-+.-+..+.
T Consensus       365 ~~a~~y~d~~~~~~~~~~F~~A~~l--dp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~  441 (606)
T KOG0547|consen  365 KRAAAYADENQSEKMWKDFNKAEDL--DPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYAYIQLCCALYRQ  441 (606)
T ss_pred             HHHHHHhhhhccHHHHHHHHHHHhc--CCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHH
Confidence            7888899999999999999998755  6668889999999999999999999999998876322 456677777777789


Q ss_pred             CCHHHHHHHHHHhcC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH----HHHHHHhhcccCCCCCC
Q 048269          297 GRLREAYKVVEEIEK---PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTY----IMLLQGHLGKRGRKGPD  369 (465)
Q Consensus       297 ~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~----~~ll~~~~~~~~~~~~~  369 (465)
                      ++++++...|++..+   ..+..|+.....+...++++.|.+.|+..++.  .|+....    ..++.            
T Consensus       442 ~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--E~~~~~~~v~~~plV~------------  507 (606)
T KOG0547|consen  442 HKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL--EPREHLIIVNAAPLVH------------  507 (606)
T ss_pred             HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--ccccccccccchhhhh------------
Confidence            999999999999988   45678999999999999999999999998854  3331100    00111            


Q ss_pred             CchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHhhccchHHHHHHHHHHHHc
Q 048269          370 PLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVP-RFDYNKFLHYYSNEEGVVMFEEVGKKLREV  436 (465)
Q Consensus       370 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  436 (465)
                            -.++.. .=.+++..|..++++..+  +.|- ...|..|...-.+.|+.++|.++|++-...
T Consensus       508 ------Ka~l~~-qwk~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~l  566 (606)
T KOG0547|consen  508 ------KALLVL-QWKEDINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQL  566 (606)
T ss_pred             ------hhHhhh-chhhhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence                  011111 122899999999999987  4553 448889999999999999999999987654

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.34  E-value=2.8e-08  Score=91.97  Aligned_cols=387  Identities=11%  Similarity=0.072  Sum_probs=234.0

Q ss_pred             HHHHHHhcCCC-ChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHH
Q 048269           41 FFLQICNNFPL-SWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLA  119 (465)
Q Consensus        41 ~~~~~l~~~~~-~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~  119 (465)
                      .+...+..+.. +++..+.+.+.++.+.+   -...+....--.+...|+-++|.+......+.++-+...|+.+.-.+.
T Consensus        10 lF~~~lk~yE~kQYkkgLK~~~~iL~k~~---eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R   86 (700)
T KOG1156|consen   10 LFRRALKCYETKQYKKGLKLIKQILKKFP---EHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQR   86 (700)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHhCC---ccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHh
Confidence            34455544443 66677777777644222   244444444445566677888888887777777777777777777777


Q ss_pred             hcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHH
Q 048269          120 EVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKI  199 (465)
Q Consensus       120 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  199 (465)
                      ..+++++|++.|......+ +.|...+.-+.-.-++.|+++.....-.++..-.+.....|..+..++.-.|+...|..+
T Consensus        87 ~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~i  165 (700)
T KOG1156|consen   87 SDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEI  165 (700)
T ss_pred             hhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7788888888888887765 556666666655556667776666665555543455566777777777888888888888


Q ss_pred             HHHHHHCC-CCCcHHHHHHHH------HHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 048269          200 WNLMTDEG-FEPSIDVVDKMI------ETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLE  272 (465)
Q Consensus       200 ~~~m~~~g-~~~~~~~~~~li------~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~  272 (465)
                      +++..+.. -.|+...+.-..      ....++|..+.|.+.+......-+.  ....-.+-...+.+.+++++|..++.
T Consensus       166 l~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~D--kla~~e~ka~l~~kl~~lEeA~~~y~  243 (700)
T KOG1156|consen  166 LEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVD--KLAFEETKADLLMKLGQLEEAVKVYR  243 (700)
T ss_pred             HHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHH--HHHHhhhHHHHHHHHhhHHhHHHHHH
Confidence            88877654 235555543332      2334567777777777655433111  22233344566778888888888888


Q ss_pred             HHHHCCCCCCHHHHHHHH-HHHHhcCCHHHHH-HHHHHhcC--CCHhhHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCC
Q 048269          273 EMFKRGIEADNLTLSSII-YGLLARGRLREAY-KVVEEIEK--PDISLYHGLIKGLLR-LRRAREATQVFREMIKRGCEP  347 (465)
Q Consensus       273 ~m~~~~~~~~~~~~~~li-~~~~~~~~~~~a~-~~~~~~~~--~~~~~~~~li~~~~~-~~~~~~a~~~~~~m~~~~~~p  347 (465)
                      .+...  .||..-|.... .++.+-.+.-++. .+|....+  |....-.-+-..... ..-.+..-.++..+.+.|+++
T Consensus       244 ~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~  321 (700)
T KOG1156|consen  244 RLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS  321 (700)
T ss_pred             HHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc
Confidence            88876  45655554443 3443333333333 55555544  111110001001111 122233344555666666655


Q ss_pred             CHHHHHHHHHH-------------hhcccC----------CCCCCCchHHHH--HHHHHHHhcCCHHHHHHHHHHHHhCC
Q 048269          348 TMHTYIMLLQG-------------HLGKRG----------RKGPDPLVNFDT--IFVGGLVKAGKSLDAAKYVERVMNRG  402 (465)
Q Consensus       348 ~~~~~~~ll~~-------------~~~~~~----------~~~~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~~  402 (465)
                      --..+.++..-             +....+          ...-+|+...|+  .++..|-+.|+++.|..+++...+  
T Consensus       322 vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId--  399 (700)
T KOG1156|consen  322 VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID--  399 (700)
T ss_pred             hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc--
Confidence            33333332221             111111          223366666654  577888899999999999999885  


Q ss_pred             CCCCHh-hHHHHHHHHhhccchHHHHHHHHHHHHcC
Q 048269          403 VEVPRF-DYNKFLHYYSNEEGVVMFEEVGKKLREVG  437 (465)
Q Consensus       403 ~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~g  437 (465)
                      ..|+.. .|..=.+.+...|+.+.|..++++..+.+
T Consensus       400 HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD  435 (700)
T KOG1156|consen  400 HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD  435 (700)
T ss_pred             cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Confidence            467665 66666678888899999999998888775

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.33  E-value=1.7e-07  Score=86.84  Aligned_cols=377  Identities=12%  Similarity=0.056  Sum_probs=233.1

Q ss_pred             HHhhhhhCCCCCCHHHHHHHHhcCCCChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCC
Q 048269           26 LHSSLSSCNFNLTHEFFLQICNNFPLSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRL  105 (465)
Q Consensus        26 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  105 (465)
                      +..+|.+.+...+.-.+..+.-.+-++-+.|.......+..+.+   +.+.|..+.-.+....++++|++.|......+.
T Consensus        30 ~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~---S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~  106 (700)
T KOG1156|consen   30 IKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK---SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEK  106 (700)
T ss_pred             HHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcc---cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCC
Confidence            77888888877777777777656666778888888887554444   788899888888888999999999999988888


Q ss_pred             CChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh--cCCCCCHHhHHHH
Q 048269          106 VNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLS--EWIKPNEIAYGWL  183 (465)
Q Consensus       106 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~--~~~~~~~~~~~~l  183 (465)
                      .+...+.-+.-.-++.|+++.....-..+.+.. +.....|..+..++.-.|+...|..++++..  ....|+...|...
T Consensus       107 dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~s  185 (700)
T KOG1156|consen  107 DNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHS  185 (700)
T ss_pred             CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHH
Confidence            888888777777777788887777777777643 3345556667777777788888888888777  2234665555443


Q ss_pred             HH------HHHhcCCHHHHHHHHHHHHHCCCCCcHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHH
Q 048269          184 IK------GYCDVGDLIEASKIWNLMTDEGFEPSIDV-VDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVID  256 (465)
Q Consensus       184 i~------~~~~~g~~~~a~~~~~~m~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~  256 (465)
                      ..      ...+.|..+.|.+.+..-...  ..|... -..-...+.+.+++++|..++..+...  .|.+...|..+..
T Consensus       186 e~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~  261 (700)
T KOG1156|consen  186 ELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEK  261 (700)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHH
Confidence            32      233445556655555443321  112221 223344556667777777777776655  4423333333333


Q ss_pred             HHHh-cCChH----------------------------------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 048269          257 WMCK-RGKIS----------------------------------QAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLRE  301 (465)
Q Consensus       257 ~~~~-~~~~~----------------------------------~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~  301 (465)
                      ++.+ .+..+                                  ....++..+.+.|+++   ++..+...|-.-...+-
T Consensus       262 ~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~  338 (700)
T KOG1156|consen  262 ALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAF  338 (700)
T ss_pred             HHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHH
Confidence            3321 22222                                  2223333334444432   22222222222111111


Q ss_pred             HHHHHHHhcC------------------CCHhhHH--HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc
Q 048269          302 AYKVVEEIEK------------------PDISLYH--GLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLG  361 (465)
Q Consensus       302 a~~~~~~~~~------------------~~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~  361 (465)
                      ..++.-.+..                  |....|.  .++..|-+.|+++.|..+++..++  -.|+..-.-        
T Consensus       339 le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId--HTPTliEly--------  408 (700)
T KOG1156|consen  339 LEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID--HTPTLIELY--------  408 (700)
T ss_pred             HHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc--cCchHHHHH--------
Confidence            1111111111                  3444444  456677888999999999988874  356544332        


Q ss_pred             ccCCCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhccchHHHHHHHHHHHHcCC
Q 048269          362 KRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNEEGVVMFEEVGKKLREVGL  438 (465)
Q Consensus       362 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~  438 (465)
                                    -.-.+.+...|++++|..++++..+.+ .||..+-..-.....+..+.++|.+++-...+.|.
T Consensus       409 --------------~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~  470 (700)
T KOG1156|consen  409 --------------LVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF  470 (700)
T ss_pred             --------------HHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence                          222345688899999999999998764 46665555666777788899999999988888874

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.31  E-value=2.3e-08  Score=94.56  Aligned_cols=312  Identities=13%  Similarity=0.071  Sum_probs=217.0

Q ss_pred             HHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhc---
Q 048269          114 ALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDV---  190 (465)
Q Consensus       114 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~---  190 (465)
                      ....+...|++++|++.++.-... +.............+.+.|+.++|..+|..+....+.|..-|..+..+..-.   
T Consensus        10 ~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~   88 (517)
T PF12569_consen   10 KNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQL   88 (517)
T ss_pred             HHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccc
Confidence            345668889999999999875543 3445566777889999999999999999999965566777777777766322   


Q ss_pred             --CCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHH
Q 048269          191 --GDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDD-EAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQA  267 (465)
Q Consensus       191 --g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~-~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a  267 (465)
                        .+.+....+++++.+.  -|.......+.-.+..-..+. .+..++..+...|+++    +|+.+-..|......+-.
T Consensus        89 ~~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs----lF~~lk~Ly~d~~K~~~i  162 (517)
T PF12569_consen   89 SDEDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS----LFSNLKPLYKDPEKAAII  162 (517)
T ss_pred             ccccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch----HHHHHHHHHcChhHHHHH
Confidence              3578888999988775  354444433333333323343 4566777778888765    788887777766666666


Q ss_pred             HHHHHHHHHC----C----------CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHhcC--CC-HhhHHHHHHHHHhcC
Q 048269          268 YTMLEEMFKR----G----------IEADN--LTLSSIIYGLLARGRLREAYKVVEEIEK--PD-ISLYHGLIKGLLRLR  328 (465)
Q Consensus       268 ~~~~~~m~~~----~----------~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~~  328 (465)
                      ..++......    +          -.|+.  .++.-+...|...|++++|.+.+++...  |+ +..|..-...+-+.|
T Consensus       163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G  242 (517)
T PF12569_consen  163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAG  242 (517)
T ss_pred             HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCC
Confidence            6666665432    1          12333  3445667788899999999999998887  44 567778888899999


Q ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh
Q 048269          329 RAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRF  408 (465)
Q Consensus       329 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~  408 (465)
                      ++.+|.+.++..+..  .+...-.|+-..                      ..+.+.|++++|.+++......+..|-..
T Consensus       243 ~~~~Aa~~~~~Ar~L--D~~DRyiNsK~a----------------------Ky~LRa~~~e~A~~~~~~Ftr~~~~~~~~  298 (517)
T PF12569_consen  243 DLKEAAEAMDEAREL--DLADRYINSKCA----------------------KYLLRAGRIEEAEKTASLFTREDVDPLSN  298 (517)
T ss_pred             CHHHHHHHHHHHHhC--ChhhHHHHHHHH----------------------HHHHHCCCHHHHHHHHHhhcCCCCCcccC
Confidence            999999999998854  444444443333                      33589999999999999998766544221


Q ss_pred             ------hH--HHHHHHHhhccchHHHHHHHHHHHHc------------CCCCchhHHHHHHHHHhHHh
Q 048269          409 ------DY--NKFLHYYSNEEGVVMFEEVGKKLREV------------GLADLADIFQRYGKKMATRE  456 (465)
Q Consensus       409 ------~~--~~ll~~~~~~g~~~~a~~~~~~~~~~------------g~~~~~~~~~~~~~~~~~~~  456 (465)
                            .|  .....+|.+.|++..|+..+..+.+.            .|-.-..++.+|-++++..+
T Consensus       299 L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed  366 (517)
T PF12569_consen  299 LNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWED  366 (517)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHH
Confidence                  12  34466788889999888888777655            13333445556665555444

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.25  E-value=6.5e-07  Score=80.12  Aligned_cols=366  Identities=10%  Similarity=-0.006  Sum_probs=236.3

Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH-HHHHHHHH
Q 048269           73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSL-EMLNKVVK  151 (465)
Q Consensus        73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~  151 (465)
                      +...|-....-=..++++..|..+|+.....+..+...|-.-+..-.+++....|..+++.....  -|-+ ..|...+.
T Consensus        72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~y  149 (677)
T KOG1915|consen   72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIY  149 (677)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHH
Confidence            66677777777777889999999999999887777778888899999999999999999999875  3333 34555555


Q ss_pred             HHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHH
Q 048269          152 TLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEA  231 (465)
Q Consensus       152 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A  231 (465)
                      +=-..|++..|.++|++-.. ..|+...|.+.|+.=.+-..++.|..+++...-.  .|++.+|......=.+.|+...|
T Consensus       150 mEE~LgNi~gaRqiferW~~-w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~a  226 (677)
T KOG1915|consen  150 MEEMLGNIAGARQIFERWME-WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALA  226 (677)
T ss_pred             HHHHhcccHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHH
Confidence            66678999999999999662 4799999999999999999999999999999865  59999999999988999999999


Q ss_pred             HHHHHHHHHcCCCCCCcchHHHHHHHH----HhcCChHHHHHHHHHHHHCCC----------------------------
Q 048269          232 MKVFQMMRVKRMDDLGLSTYRIVIDWM----CKRGKISQAYTMLEEMFKRGI----------------------------  279 (465)
Q Consensus       232 ~~~~~~m~~~~~~~~~~~~~~~li~~~----~~~~~~~~a~~~~~~m~~~~~----------------------------  279 (465)
                      ..+|+...+.  .. +...-..+..++    .++..++.|.-+|+-....-.                            
T Consensus       227 R~VyerAie~--~~-~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~I  303 (677)
T KOG1915|consen  227 RSVYERAIEF--LG-DDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAI  303 (677)
T ss_pred             HHHHHHHHHH--hh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHH
Confidence            9999887654  11 222222333333    344556666666655443311                            


Q ss_pred             ---------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC--CCHh---hHHHHHH--------HHHhcCCHH
Q 048269          280 ---------------EADNLTLSSIIYGLLARGRLREAYKVVEEIEK--PDIS---LYHGLIK--------GLLRLRRAR  331 (465)
Q Consensus       280 ---------------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~---~~~~li~--------~~~~~~~~~  331 (465)
                                     +.|-.+|-..++.-...|+.+...++|+....  |...   .|.-.|.        .=....+.+
T Consensus       304 v~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~e  383 (677)
T KOG1915|consen  304 VGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVE  383 (677)
T ss_pred             hhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence                           11222333344444455666666666666554  2111   1111111        112345666


Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHhhc----ccC----------CCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048269          332 EATQVFREMIKRGCEPTMHTYIMLLQGHLG----KRG----------RKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVER  397 (465)
Q Consensus       332 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~----------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  397 (465)
                      .+.++|+..++ -++-...||.-+--.++.    ..+          ..|.-|-..+|...|..=.+.+.++....++++
T Consensus       384 rtr~vyq~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEk  462 (677)
T KOG1915|consen  384 RTRQVYQACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEK  462 (677)
T ss_pred             HHHHHHHHHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            66666666664 123334444332222210    000          455666666666666666666777777777777


Q ss_pred             HHhCCCCC-CHhhHHHHHHHHhhccchHHHHHHHHHHHHcC-CCCchhHHHHHH
Q 048269          398 VMNRGVEV-PRFDYNKFLHYYSNEEGVVMFEEVGKKLREVG-LADLADIFQRYG  449 (465)
Q Consensus       398 m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g-~~~~~~~~~~~~  449 (465)
                      .++  ..| |-.+|.....--...|+.+.|..+++-.++.. ......++.+|.
T Consensus       463 fle--~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYI  514 (677)
T KOG1915|consen  463 FLE--FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYI  514 (677)
T ss_pred             HHh--cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhh
Confidence            665  344 33356555555555677777777776666554 222333444444

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.24  E-value=2.6e-08  Score=90.74  Aligned_cols=280  Identities=12%  Similarity=0.016  Sum_probs=220.5

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHH
Q 048269          108 DKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGY  187 (465)
Q Consensus       108 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~  187 (465)
                      ..........|...+++.+..++.+.+.+.. +++...+..-|.++...|+..+-..+=.++....|..+.+|-++...|
T Consensus       244 ~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YY  322 (611)
T KOG1173|consen  244 LDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYY  322 (611)
T ss_pred             HHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHH
Confidence            3445556667788899999999999998865 778888888888999999988888888888877788899999999999


Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHH
Q 048269          188 CDVGDLIEASKIWNLMTDEGFEPS-IDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQ  266 (465)
Q Consensus       188 ~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~  266 (465)
                      ...|+..+|.+.|.+....  .|+ ...|-.....|.-.|..++|...+...-+.  -|...--+--+.--|.+.+..+.
T Consensus       323 l~i~k~seARry~SKat~l--D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl--~~G~hlP~LYlgmey~~t~n~kL  398 (611)
T KOG1173|consen  323 LMIGKYSEARRYFSKATTL--DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL--MPGCHLPSLYLGMEYMRTNNLKL  398 (611)
T ss_pred             HHhcCcHHHHHHHHHHhhc--CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh--ccCCcchHHHHHHHHHHhccHHH
Confidence            9999999999999998764  232 467889999999999999999998877653  22122233344556888999999


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC----------CCHhhHHHHHHHHHhcCCHHHHHHH
Q 048269          267 AYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK----------PDISLYHGLIKGLLRLRRAREATQV  336 (465)
Q Consensus       267 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----------~~~~~~~~li~~~~~~~~~~~a~~~  336 (465)
                      |.++|.+.... .+.|+...+.+.-.....+.+.+|...|+....          .-..+++.|..+|.+.+.+++|+..
T Consensus       399 Ae~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~  477 (611)
T KOG1173|consen  399 AEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY  477 (611)
T ss_pred             HHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence            99999988765 234778888887777788999999999988764          1344578888999999999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 048269          337 FREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHY  416 (465)
Q Consensus       337 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~  416 (465)
                      ++..+..  .|.                      +..++.++.-.|...|+++.|++.|.+...  +.|+..+...++..
T Consensus       478 ~q~aL~l--~~k----------------------~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~  531 (611)
T KOG1173|consen  478 YQKALLL--SPK----------------------DASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKL  531 (611)
T ss_pred             HHHHHHc--CCC----------------------chhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHH
Confidence            9998854  333                      223344455557889999999999999985  78988777777765


Q ss_pred             Hhh
Q 048269          417 YSN  419 (465)
Q Consensus       417 ~~~  419 (465)
                      +..
T Consensus       532 aie  534 (611)
T KOG1173|consen  532 AIE  534 (611)
T ss_pred             HHH
Confidence            543

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.24  E-value=1.1e-09  Score=92.76  Aligned_cols=232  Identities=10%  Similarity=-0.013  Sum_probs=194.5

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHc
Q 048269           76 TFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQ  155 (465)
Q Consensus        76 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~  155 (465)
                      .-+.+...|.+.|-+.+|.+.|+...... +-+.||..+-+.|.+..+++.|+.+|.+-.+. .+-|+.......+.+-.
T Consensus       225 Wk~Q~gkCylrLgm~r~AekqlqssL~q~-~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea  302 (478)
T KOG1129|consen  225 WKQQMGKCYLRLGMPRRAEKQLQSSLTQF-PHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA  302 (478)
T ss_pred             HHHHHHHHHHHhcChhhhHHHHHHHhhcC-CchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence            34678889999999999999999877654 34568999999999999999999999988875 24444444567788888


Q ss_pred             CCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 048269          156 RKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVF  235 (465)
Q Consensus       156 ~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~  235 (465)
                      .++.++|.++|+...+..+.++.....+...|.-.++++.|+.+|+++.+.|+. +...|+.+.-+|.-.++++-++..|
T Consensus       303 m~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf  381 (478)
T KOG1129|consen  303 MEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF  381 (478)
T ss_pred             HHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence            999999999999998666778888888888999999999999999999999975 8889999999999999999999999


Q ss_pred             HHHHHcCCCC-CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC
Q 048269          236 QMMRVKRMDD-LGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK  311 (465)
Q Consensus       236 ~~m~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~  311 (465)
                      +.....--.| .-...|-.+-......||+..|.+.|+-...++.. +...++.|.-.-.+.|++++|..++.....
T Consensus       382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s  457 (478)
T KOG1129|consen  382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKS  457 (478)
T ss_pred             HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence            8877543323 02346777778888899999999999988876433 677888888888999999999999998877

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.21  E-value=8.9e-08  Score=84.00  Aligned_cols=289  Identities=9%  Similarity=-0.003  Sum_probs=213.8

Q ss_pred             ChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 048269           52 SWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFF  131 (465)
Q Consensus        52 ~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  131 (465)
                      +...|...|-.+ ....-++-|+.....+...+...|+.++|+..|++....++-+........-.+.+.|+.+....+.
T Consensus       211 ~hs~a~~t~l~l-e~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~  289 (564)
T KOG1174|consen  211 KHSDASQTFLML-HDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALM  289 (564)
T ss_pred             ccchhhhHHHHH-HhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHH
Confidence            334444555554 5556678899999999999999999999999999988777644433444444556778888888777


Q ss_pred             HHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCc
Q 048269          132 HIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPS  211 (465)
Q Consensus       132 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~  211 (465)
                      ..+.... .-+...|-.-+......++++.|+.+-++.....+.+...+-.-...+...|++++|.-.|+..+... +-+
T Consensus       290 ~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~r  367 (564)
T KOG1174|consen  290 DYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYR  367 (564)
T ss_pred             HHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhh
Confidence            7776532 23444454445555667889999999988774445566666666677888999999999999987752 347


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHH-HHHH-hcCChHHHHHHHHHHHHCCCCCC-HHHHHH
Q 048269          212 IDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVI-DWMC-KRGKISQAYTMLEEMFKRGIEAD-NLTLSS  288 (465)
Q Consensus       212 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li-~~~~-~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~  288 (465)
                      ..+|.-|+.+|...|++.+|.-.-+.....  -|.+..+.+.+. ..|. .-..-++|.+++++-.+.  .|+ ....+.
T Consensus       368 L~~Y~GL~hsYLA~~~~kEA~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~  443 (564)
T KOG1174|consen  368 LEIYRGLFHSYLAQKRFKEANALANWTIRL--FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNL  443 (564)
T ss_pred             HHHHHHHHHHHHhhchHHHHHHHHHHHHHH--hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHH
Confidence            889999999999999999988777665543  222555555542 2222 223347888888877654  454 345566


Q ss_pred             HHHHHHhcCCHHHHHHHHHHhcC--CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 048269          289 IIYGLLARGRLREAYKVVEEIEK--PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTM  349 (465)
Q Consensus       289 li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~  349 (465)
                      +...+...|..+++..+++....  +|....+.|...+...+.+.+|++.|....+  +.|+.
T Consensus       444 ~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--~dP~~  504 (564)
T KOG1174|consen  444 IAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR--QDPKS  504 (564)
T ss_pred             HHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCccc
Confidence            77788899999999999999887  9999999999999999999999999999884  35643

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.20  E-value=4.6e-07  Score=83.26  Aligned_cols=58  Identities=12%  Similarity=0.170  Sum_probs=32.7

Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCC---CCC-----c-----chHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 048269          221 TFFKINKDDEAMKVFQMMRVKRMD---DLG-----L-----STYRIVIDWMCKRGKISQAYTMLEEMFKRG  278 (465)
Q Consensus       221 ~~~~~g~~~~A~~~~~~m~~~~~~---~~~-----~-----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~  278 (465)
                      .+...|++.+|+++++...+-+..   -.|     .     ..-.-+..++-..|+.++|..+|....+..
T Consensus       184 ~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~  254 (652)
T KOG2376|consen  184 ILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN  254 (652)
T ss_pred             HHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc
Confidence            345668888888888776221100   000     0     012234445667788888888777776654

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.19  E-value=1e-08  Score=95.72  Aligned_cols=234  Identities=17%  Similarity=0.106  Sum_probs=177.2

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHhhhC-----C-CCCCHHH-HHHHHHHHHcCCCHHHHHHHHHHhh---c---C--
Q 048269          108 DKTFKIALMTLAEVRELKKMVNFFHIMNDC-----G-CEYSLEM-LNKVVKTLCQRKLVVEAKYLILKLS---E---W--  172 (465)
Q Consensus       108 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~m~---~---~--  172 (465)
                      ..++..+...|...|+++.|+.+++...+.     | ..|...+ .+.+...|...+++++|..+|+++.   .   |  
T Consensus       199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~  278 (508)
T KOG1840|consen  199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED  278 (508)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence            357777999999999999999999987764     2 1233333 3457778899999999999999976   1   1  


Q ss_pred             CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCcH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHc---C
Q 048269          173 IKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDE-----GF-EPSI-DVVDKMIETFFKINKDDEAMKVFQMMRVK---R  242 (465)
Q Consensus       173 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~-~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~  242 (465)
                      .+.-..+++.|..+|.+.|++++|...++...+-     |. .|.. ..++.+...++..+++++|..+++...+.   -
T Consensus       279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~  358 (508)
T KOG1840|consen  279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA  358 (508)
T ss_pred             CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence            2223567788888999999999998888877541     21 1222 34567778889999999999998875432   1


Q ss_pred             CCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHC-----C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC-
Q 048269          243 MDD---LGLSTYRIVIDWMCKRGKISQAYTMLEEMFKR-----G--IEADNLTLSSIIYGLLARGRLREAYKVVEEIEK-  311 (465)
Q Consensus       243 ~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-  311 (465)
                      ..+   .-..+++.|...|.+.|++++|.+++++....     |  ..-....++.+...|.+.+++.+|.++|.+... 
T Consensus       359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i  438 (508)
T KOG1840|consen  359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI  438 (508)
T ss_pred             ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence            122   12357999999999999999999999987743     1  222355678888999999999999999987665 


Q ss_pred             --------CC-HhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048269          312 --------PD-ISLYHGLIKGLLRLRRAREATQVFREMI  341 (465)
Q Consensus       312 --------~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~  341 (465)
                              |+ ..+|..|...|...|+++.|.++.....
T Consensus       439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL  477 (508)
T ss_pred             HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence                    33 3578899999999999999999988776

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.19  E-value=5.9e-07  Score=83.33  Aligned_cols=305  Identities=10%  Similarity=0.012  Sum_probs=187.6

Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCC--C-hHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHH-
Q 048269           73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLV--N-DKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNK-  148 (465)
Q Consensus        73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-  148 (465)
                      ....|..+...+...|+.+.+.+.+....+....  + ..........+...|++++|.+.++...+.. +.+...+.. 
T Consensus         5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~   83 (355)
T cd05804           5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLH   83 (355)
T ss_pred             cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHh
Confidence            3455666667777778888877777766554442  2 2233334456677899999999999888753 444444442 


Q ss_pred             --HHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcC
Q 048269          149 --VVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKIN  226 (465)
Q Consensus       149 --ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g  226 (465)
                        ........+..+.+.+.+.......+........+...+...|++++|...+++..+.. +.+...+..+...+...|
T Consensus        84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g  162 (355)
T cd05804          84 LGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQG  162 (355)
T ss_pred             HHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcC
Confidence              11222234555566666555223334444555566778888999999999999998864 335667788888999999


Q ss_pred             CHHHHHHHHHHHHHcCCCCCCc--chHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHHhcCCHH
Q 048269          227 KDDEAMKVFQMMRVKRMDDLGL--STYRIVIDWMCKRGKISQAYTMLEEMFKRGI-EADNLTL-S--SIIYGLLARGRLR  300 (465)
Q Consensus       227 ~~~~A~~~~~~m~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~-~--~li~~~~~~~~~~  300 (465)
                      ++++|...++........+++.  ..|..+...+...|++++|..++++...... .+..... +  .++.-+...|...
T Consensus       163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~  242 (355)
T cd05804         163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVD  242 (355)
T ss_pred             CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCC
Confidence            9999999998877643211122  2355678888999999999999998754322 1112111 1  2233333444333


Q ss_pred             HHHHH---HHHhcC--CC-HhhHH--HHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CH---HHHHHHHHHhhcccCCC
Q 048269          301 EAYKV---VEEIEK--PD-ISLYH--GLIKGLLRLRRAREATQVFREMIKRGCEP---TM---HTYIMLLQGHLGKRGRK  366 (465)
Q Consensus       301 ~a~~~---~~~~~~--~~-~~~~~--~li~~~~~~~~~~~a~~~~~~m~~~~~~p---~~---~~~~~ll~~~~~~~~~~  366 (465)
                      .+.+.   ......  +. ...+.  ....++...|+.+.|..++..+......+   ..   .+-..++.         
T Consensus       243 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~---------  313 (355)
T cd05804         243 VGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAE---------  313 (355)
T ss_pred             hHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHH---------
Confidence            22222   111111  11 11222  45667788899999999999987643221   11   11111222         


Q ss_pred             CCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048269          367 GPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMN  400 (465)
Q Consensus       367 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  400 (465)
                                  ..++...|++++|.+.+.+...
T Consensus       314 ------------A~~~~~~g~~~~A~~~L~~al~  335 (355)
T cd05804         314 ------------ALYAFAEGNYATALELLGPVRD  335 (355)
T ss_pred             ------------HHHHHHcCCHHHHHHHHHHHHH
Confidence                        2345789999999999998875

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.19  E-value=1e-08  Score=95.72  Aligned_cols=237  Identities=13%  Similarity=0.065  Sum_probs=178.1

Q ss_pred             HHhHHHHHHHHHhcCChhHHHHHHHHHhhC-----C--CCC-hHHHHHHHHHHHhcCCHHHHHHHHHHhhh-----CC--
Q 048269           74 SITFNRMVDIIGKSRNIDLFWETLQEMGRR-----R--LVN-DKTFKIALMTLAEVRELKKMVNFFHIMND-----CG--  138 (465)
Q Consensus        74 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~--~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~--  138 (465)
                      ..+...+...|...|+++.|..+++...+.     |  .+. ....+.+...|...+++.+|..+|+.+..     .|  
T Consensus       199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~  278 (508)
T KOG1840|consen  199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED  278 (508)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence            455666999999999999999999988765     2  222 23455677889999999999999998876     22  


Q ss_pred             CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh----c---CCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHC---C
Q 048269          139 CEYSLEMLNKVVKTLCQRKLVVEAKYLILKLS----E---WIKPNE-IAYGWLIKGYCDVGDLIEASKIWNLMTDE---G  207 (465)
Q Consensus       139 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~----~---~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g  207 (465)
                      .+.-..+++.|..+|.+.|++++|..++++..    .   ...|.+ ..++.+...|+..+++++|..++....+.   -
T Consensus       279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~  358 (508)
T KOG1840|consen  279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA  358 (508)
T ss_pred             CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence            12234567778889999999999988888754    1   122222 34667778888999999999999877652   1


Q ss_pred             CCC----cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC------CCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHH-
Q 048269          208 FEP----SIDVVDKMIETFFKINKDDEAMKVFQMMRVKR------MDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFK-  276 (465)
Q Consensus       208 ~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-  276 (465)
                      +.+    -..+++.|...|.+.|++++|.++++......      ..+.....++.+...|.+.+..+.|.++|.+... 
T Consensus       359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i  438 (508)
T KOG1840|consen  359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI  438 (508)
T ss_pred             ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence            112    24689999999999999999999999876541      1221244678888999999999999988876543 


Q ss_pred             ---CCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 048269          277 ---RGI--EADNLTLSSIIYGLLARGRLREAYKVVEEIE  310 (465)
Q Consensus       277 ---~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~  310 (465)
                         .|.  +-...+|..|...|...|++++|.++.+.+.
T Consensus       439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL  477 (508)
T ss_pred             HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence               332  2246788999999999999999999987765

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.18  E-value=7e-08  Score=86.28  Aligned_cols=219  Identities=7%  Similarity=-0.049  Sum_probs=145.2

Q ss_pred             ChhHHHHHHHHHhhcCCCCCC--CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHH
Q 048269           52 SWRPVYLFFQYTQKAQPCFAH--NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVN  129 (465)
Q Consensus        52 ~~~~a~~~f~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  129 (465)
                      ..+.++..+..++... ...|  ....|..+...+.+.|++++|...|++..+.++.+..+|+.+...+...|++++|+.
T Consensus        41 ~~e~~i~~~~~~l~~~-~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~  119 (296)
T PRK11189         41 QQEVILARLNQILASR-DLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE  119 (296)
T ss_pred             HHHHHHHHHHHHHccc-cCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            4456777777763222 2222  245677778888888999999999999888888778888999999999999999999


Q ss_pred             HHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 048269          130 FFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFE  209 (465)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~  209 (465)
                      .|+...+.. +-+..+|..+..++...|++++|.+.|++.....+.+.. .......+...++.++|...|....... .
T Consensus       120 ~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~-~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~  196 (296)
T PRK11189        120 AFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPY-RALWLYLAESKLDPKQAKENLKQRYEKL-D  196 (296)
T ss_pred             HHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHccCCHHHHHHHHHHHHhhC-C
Confidence            998888754 345677777888888889999999998887733233331 2222223445678888888887655332 2


Q ss_pred             CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 048269          210 PSIDVVDKMIETFFKINKDDEAMKVFQMMRVKR-----MDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRG  278 (465)
Q Consensus       210 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~  278 (465)
                      |+...+ .+.  ....|+...+ +.+..+.+..     ..|....+|..+...+.+.|++++|...|++..+.+
T Consensus       197 ~~~~~~-~~~--~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~  266 (296)
T PRK11189        197 KEQWGW-NIV--EFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN  266 (296)
T ss_pred             ccccHH-HHH--HHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            332222 222  2334554443 3444443211     112134577888888888888888888888888764

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.17  E-value=4.3e-08  Score=87.60  Aligned_cols=149  Identities=10%  Similarity=-0.126  Sum_probs=87.0

Q ss_pred             CChhHHHHHHHHHhhCCCC----ChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 048269           88 RNIDLFWETLQEMGRRRLV----NDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAK  163 (465)
Q Consensus        88 g~~~~a~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~  163 (465)
                      +..+.++.-+.++......    ....|..+...+.+.|+.++|...|++..+.. +.+...|+.+...+...|++++|.
T Consensus        40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~  118 (296)
T PRK11189         40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY  118 (296)
T ss_pred             hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence            3455566666666544331    12346666666667777777777777666654 345666666777777777777777


Q ss_pred             HHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048269          164 YLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMR  239 (465)
Q Consensus       164 ~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  239 (465)
                      ..|++.....+-+..+|..+..++...|++++|.+.|+...+.  .|+..........+...+++++|.+.|....
T Consensus       119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~  192 (296)
T PRK11189        119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRY  192 (296)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence            7777666433445566666666666667777777777666654  2332211122222334556667776665543

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.16  E-value=1.8e-08  Score=90.07  Aligned_cols=219  Identities=10%  Similarity=0.050  Sum_probs=119.9

Q ss_pred             CCChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHH
Q 048269           50 PLSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVN  129 (465)
Q Consensus        50 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  129 (465)
                      .+++..|..-|+.++..++.   +...|-.+..+|....+.++.+..|+...+.++.++.+|..-.+...-.+++++|..
T Consensus       339 ~g~~~~a~~d~~~~I~l~~~---~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~a  415 (606)
T KOG0547|consen  339 KGDSLGAQEDFDAAIKLDPA---FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIA  415 (606)
T ss_pred             cCCchhhhhhHHHHHhcCcc---cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHH
Confidence            33555666666665444433   222355555666666666666666666666666555566666666666666666666


Q ss_pred             HHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--
Q 048269          130 FFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEG--  207 (465)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--  207 (465)
                      =|+...+.. +-+...|-.+..+..+.+.++++...|++....+|--+..|+.....+...++++.|.+.|+...+.-  
T Consensus       416 DF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~  494 (606)
T KOG0547|consen  416 DFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR  494 (606)
T ss_pred             HHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence            666666543 33444454455555556666666666666665556566666666666666666666666666665421  


Q ss_pred             ---CCCcHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 048269          208 ---FEPSIDVV--DKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMF  275 (465)
Q Consensus       208 ---~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  275 (465)
                         +..+...+  -+++-. --.+++..|.+++++..+.  .|.....|..|...-.+.|+.++|+++|++..
T Consensus       495 ~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~--Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa  564 (606)
T KOG0547|consen  495 EHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIEL--DPKCEQAYETLAQFELQRGKIDEAIELFEKSA  564 (606)
T ss_pred             cccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHcc--CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence               11111111  111111 1225555666666655533  44445556666666666666666666665543

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.13  E-value=3e-07  Score=79.21  Aligned_cols=244  Identities=7%  Similarity=-0.029  Sum_probs=151.6

Q ss_pred             CChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 048269           51 LSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNF  130 (465)
Q Consensus        51 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  130 (465)
                      ++...|..+++..  .+.+-.-...+--.+...+.+.|++++|...+.-+...+-++...+..+..++.-.|.+.+|..+
T Consensus        36 rDytGAislLefk--~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~  113 (557)
T KOG3785|consen   36 RDYTGAISLLEFK--LNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSI  113 (557)
T ss_pred             ccchhHHHHHHHh--hccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHH
Confidence            3778888888885  33332222344455677888999999999999998887767777777777777778899998887


Q ss_pred             HHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 048269          131 FHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEP  210 (465)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~  210 (465)
                      -....     .++.....+++..-+.++-++-..+.+.+..    ...--.+|.+.....-.+++|++++......  .|
T Consensus       114 ~~ka~-----k~pL~~RLlfhlahklndEk~~~~fh~~LqD----~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~  182 (557)
T KOG3785|consen  114 AEKAP-----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQD----TLEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NP  182 (557)
T ss_pred             HhhCC-----CChHHHHHHHHHHHHhCcHHHHHHHHHHHhh----hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--Ch
Confidence            65443     3444455566666777877777776666651    1122334445555556788899999888765  35


Q ss_pred             cHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhc--CCh-----------------------
Q 048269          211 SIDVVDKMI-ETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKR--GKI-----------------------  264 (465)
Q Consensus       211 ~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~--~~~-----------------------  264 (465)
                      +-...|.-+ -+|.+..-++-+.+++.-...+  .|.++.+.|..+....+.  |+.                       
T Consensus       183 ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~  260 (557)
T KOG3785|consen  183 EYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLC  260 (557)
T ss_pred             hhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHH
Confidence            554444433 4566777777788887777655  442444444433333222  111                       


Q ss_pred             ----------HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCC
Q 048269          265 ----------SQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEKPD  313 (465)
Q Consensus       265 ----------~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~  313 (465)
                                +.|++++--+.+.    -+..-..|+-.|.+.+++++|..+.+++...+
T Consensus       261 rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Ptt  315 (557)
T KOG3785|consen  261 RHNLVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLDPTT  315 (557)
T ss_pred             HcCeEEEeCCccHHHhchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhcCCCC
Confidence                      1222222222111    11222345556889999999999988876633

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.13  E-value=1.2e-07  Score=76.93  Aligned_cols=187  Identities=13%  Similarity=-0.063  Sum_probs=82.6

Q ss_pred             HHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCH
Q 048269          114 ALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDL  193 (465)
Q Consensus       114 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~  193 (465)
                      +.-.|.+.|+...|..-+++.++.. +.+..+|..+...|.+.|..+.|.+.|++..+-.+-+..+.|....-+|..|.+
T Consensus        41 Lal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~  119 (250)
T COG3063          41 LALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRP  119 (250)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCCh
Confidence            3344444444444444444444433 233344444444444444444444444444422333444444444444444444


Q ss_pred             HHHHHHHHHHHHCCCC-CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 048269          194 IEASKIWNLMTDEGFE-PSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLE  272 (465)
Q Consensus       194 ~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~  272 (465)
                      ++|...|+.....--- --..+|..+.-+..+.|+++.|.+.|+...+.  .|....+...+.....+.|++-.|..+++
T Consensus       120 ~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~--dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~  197 (250)
T COG3063         120 EEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL--DPQFPPALLELARLHYKAGDYAPARLYLE  197 (250)
T ss_pred             HHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh--CcCCChHHHHHHHHHHhcccchHHHHHHH
Confidence            4444444444432110 11234444444444455555555555444433  22233344444444445555555555544


Q ss_pred             HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048269          273 EMFKRGIEADNLTLSSIIYGLLARGRLREAYK  304 (465)
Q Consensus       273 ~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~  304 (465)
                      .....+. ++..+.-..|+.-...|+.+.+.+
T Consensus       198 ~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~  228 (250)
T COG3063         198 RYQQRGG-AQAESLLLGIRIAKRLGDRAAAQR  228 (250)
T ss_pred             HHHhccc-ccHHHHHHHHHHHHHhccHHHHHH
Confidence            4444433 344444444444444444444443

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.12  E-value=8.5e-07  Score=82.26  Aligned_cols=262  Identities=7%  Similarity=-0.063  Sum_probs=143.6

Q ss_pred             HHHHHhcCChhHHHHHHHHHhhCCCCChHHHHH---HHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCC
Q 048269           81 VDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKI---ALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRK  157 (465)
Q Consensus        81 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~  157 (465)
                      ...+...|++++|.+.+++..+..+.+...+..   ........+....+.+.+..... ..+........+...+...|
T Consensus        50 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~a~~~~~~G  128 (355)
T cd05804          50 ALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAP-ENPDYWYLLGMLAFGLEEAG  128 (355)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCc-CCCCcHHHHHHHHHHHHHcC
Confidence            445566778888888888777766555444442   11111223444455555444111 11222334445556677788


Q ss_pred             CHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCcH--HHHHHHHHHHHhcCCHHHHHHH
Q 048269          158 LVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGF-EPSI--DVVDKMIETFFKINKDDEAMKV  234 (465)
Q Consensus       158 ~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~~--~~~~~li~~~~~~g~~~~A~~~  234 (465)
                      ++++|...+++.....+.+...+..+...+...|++++|...++......- .|+.  ..|..+...+...|++++|.++
T Consensus       129 ~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~  208 (355)
T cd05804         129 QYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAI  208 (355)
T ss_pred             CHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHH
Confidence            888888888887754466667777777788888888888888877765421 1222  3445677777888888888888


Q ss_pred             HHHHHHcCCCCCCcchH-H--HHHHHHHhcCChHHHHHH--HHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048269          235 FQMMRVKRMDDLGLSTY-R--IVIDWMCKRGKISQAYTM--LEEMFKRGI--EADNLTLSSIIYGLLARGRLREAYKVVE  307 (465)
Q Consensus       235 ~~~m~~~~~~~~~~~~~-~--~li~~~~~~~~~~~a~~~--~~~m~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~  307 (465)
                      +++.......+...... +  .++.-+...|..+.+.++  +........  ............++...|+.+.|..+++
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~  288 (355)
T cd05804         209 YDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLA  288 (355)
T ss_pred             HHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHH
Confidence            88765332111011111 1  223333334433333332  111111110  1111222245556677788888888887


Q ss_pred             HhcC---C---CHh----hHHHHHH--HHHhcCCHHHHHHHHHHHHHc
Q 048269          308 EIEK---P---DIS----LYHGLIK--GLLRLRRAREATQVFREMIKR  343 (465)
Q Consensus       308 ~~~~---~---~~~----~~~~li~--~~~~~~~~~~a~~~~~~m~~~  343 (465)
                      .+..   .   ...    +-..++.  ++...|+.++|.+.+.+....
T Consensus       289 ~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~  336 (355)
T cd05804         289 ALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD  336 (355)
T ss_pred             HHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            7765   2   111    1111222  345778888888888877643

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.10  E-value=1.8e-07  Score=75.93  Aligned_cols=198  Identities=8%  Similarity=-0.071  Sum_probs=160.3

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHc
Q 048269           76 TFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQ  155 (465)
Q Consensus        76 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~  155 (465)
                      ....|.-.|.+.|++..|.+-+++..+.++.+..+|..+...|.+.|..+.|.+.|+...+.. +-+-.+.|.....+|.
T Consensus        37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~  115 (250)
T COG3063          37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA  115 (250)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence            345567788899999999999999999888888889999999999999999999999888865 5567788888888889


Q ss_pred             CCCHHHHHHHHHHhh--cCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 048269          156 RKLVVEAKYLILKLS--EWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMK  233 (465)
Q Consensus       156 ~~~~~~a~~~~~~m~--~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~  233 (465)
                      .|.+++|...|++..  .....-..+|..+.-+..+.|+.+.|...|++..+.. +-...+...+.....+.|++-.|..
T Consensus       116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~  194 (250)
T COG3063         116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARL  194 (250)
T ss_pred             CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHH
Confidence            999999999999877  3344455678888888888999999999999988763 2245567788888889999999998


Q ss_pred             HHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 048269          234 VFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKR  277 (465)
Q Consensus       234 ~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  277 (465)
                      .++.....+. + +....-.-|..-...|+.+.+.++=..+.+.
T Consensus       195 ~~~~~~~~~~-~-~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~  236 (250)
T COG3063         195 YLERYQQRGG-A-QAESLLLGIRIAKRLGDRAAAQRYQAQLQRL  236 (250)
T ss_pred             HHHHHHhccc-c-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            8888877654 5 7777777778888888888887776666654

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.06  E-value=3.1e-06  Score=78.76  Aligned_cols=356  Identities=13%  Similarity=0.150  Sum_probs=220.6

Q ss_pred             HHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCC----------------------HHHHHHHH
Q 048269           74 SITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRE----------------------LKKMVNFF  131 (465)
Q Consensus        74 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------------------~~~a~~~~  131 (465)
                      ...|++|.+.|.+.|.+++|.++|++..+.-. +..-|..+.+.|++...                      ++-...-|
T Consensus       248 g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~-tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~  326 (835)
T KOG2047|consen  248 GFLWCSLADYYIRSGLFEKARDVYEEAIQTVM-TVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARF  326 (835)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhe-ehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHH
Confidence            46799999999999999999999999876532 33335555555443321                      22233334


Q ss_pred             HHhhhCC-----------CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCC------HHhHHHHHHHHHhcCCHH
Q 048269          132 HIMNDCG-----------CEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPN------EIAYGWLIKGYCDVGDLI  194 (465)
Q Consensus       132 ~~~~~~~-----------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~------~~~~~~li~~~~~~g~~~  194 (465)
                      +.+...+           -+.++..|..-+..  ..|+..+-...|.+....+.|.      ...|..+.+.|-..|+++
T Consensus       327 e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~  404 (835)
T KOG2047|consen  327 ESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLD  404 (835)
T ss_pred             HHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHH
Confidence            4333321           01223333332222  3466777788888877444443      346888899999999999


Q ss_pred             HHHHHHHHHHHCCCCCc---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----------C------CCcchHHHHH
Q 048269          195 EASKIWNLMTDEGFEPS---IDVVDKMIETFFKINKDDEAMKVFQMMRVKRMD----------D------LGLSTYRIVI  255 (465)
Q Consensus       195 ~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----------~------~~~~~~~~li  255 (465)
                      .|..+|++..+-..+--   ..+|..-...=.+..+++.|+++.+......-.          |      .+...|...+
T Consensus       405 ~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~  484 (835)
T KOG2047|consen  405 DARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYA  484 (835)
T ss_pred             HHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHH
Confidence            99999999987544322   456666667777788899999888776432111          1      1223455666


Q ss_pred             HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC----CCH-hhHHHHHHHHHh---c
Q 048269          256 DWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK----PDI-SLYHGLIKGLLR---L  327 (465)
Q Consensus       256 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~-~~~~~li~~~~~---~  327 (465)
                      +.--..|-++....+|+.+....+. ++.........+....-++++.+++++-..    |++ ..|+..+.-+.+   .
T Consensus       485 DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg  563 (835)
T KOG2047|consen  485 DLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGG  563 (835)
T ss_pred             HHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcC
Confidence            6666778889999999999887654 555554455556677778999999998776    544 467776665554   2


Q ss_pred             CCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHhhcccC------------CCCCCCc--hHHHHHHHHHHHhcCCHHHHH
Q 048269          328 RRAREATQVFREMIKRGCEPTMHTYIMLL-QGHLGKRG------------RKGPDPL--VNFDTIFVGGLVKAGKSLDAA  392 (465)
Q Consensus       328 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll-~~~~~~~~------------~~~~~~~--~~~~~~li~~~~~~g~~~~A~  392 (465)
                      ...+.|..+|++.++ |++|...-+..++ .-+-..-|            ..++++.  -..||..|.--...=......
T Consensus       564 ~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR  642 (835)
T KOG2047|consen  564 TKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTR  642 (835)
T ss_pred             CCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccH
Confidence            468999999999998 7777544333333 22222222            2222322  235666665555444455566


Q ss_pred             HHHHHHHhCCCCCCHhhHHH---HHHHHhhccchHHHHHHHHHHHHc
Q 048269          393 KYVERVMNRGVEVPRFDYNK---FLHYYSNEEGVVMFEEVGKKLREV  436 (465)
Q Consensus       393 ~~~~~m~~~~~~p~~~~~~~---ll~~~~~~g~~~~a~~~~~~~~~~  436 (465)
                      .+|++.++.  -|+...-..   +...-.+.|..+.|..++..-.+.
T Consensus       643 ~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~  687 (835)
T KOG2047|consen  643 EIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI  687 (835)
T ss_pred             HHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc
Confidence            666666653  455443222   222234457777777777666655

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.06  E-value=2.9e-07  Score=77.41  Aligned_cols=198  Identities=14%  Similarity=0.120  Sum_probs=145.1

Q ss_pred             HHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHH-HHHH
Q 048269           74 SITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNK-VVKT  152 (465)
Q Consensus        74 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-ll~~  152 (465)
                      ..-+++.+..+.+..++++|++++..-.++++.+....+.+..+|....++..|-..|+++-..  .|...-|.. -...
T Consensus        10 EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQS   87 (459)
T KOG4340|consen   10 EGEFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQS   87 (459)
T ss_pred             CCchHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHH
Confidence            3346777777888889999999998888888778888899999999999999999999998774  566655543 3455


Q ss_pred             HHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHH
Q 048269          153 LCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKG--YCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDE  230 (465)
Q Consensus       153 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~  230 (465)
                      +.+.+.+..|+.+...|...  ++...-..-+.+  ....+|+..+..++++....|   +..+.+.......+.|+++.
T Consensus        88 LY~A~i~ADALrV~~~~~D~--~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEa  162 (459)
T KOG4340|consen   88 LYKACIYADALRVAFLLLDN--PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEA  162 (459)
T ss_pred             HHHhcccHHHHHHHHHhcCC--HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHH
Confidence            66788899999998888732  322222222222  235688888888888876432   55555666666778899999


Q ss_pred             HHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 048269          231 AMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIE  280 (465)
Q Consensus       231 A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~  280 (465)
                      |.+-|+...+-+..- ....|+..+. ..+.++.+.|++...++++.|++
T Consensus       163 AvqkFqaAlqvsGyq-pllAYniALa-Hy~~~qyasALk~iSEIieRG~r  210 (459)
T KOG4340|consen  163 AVQKFQAALQVSGYQ-PLLAYNLALA-HYSSRQYASALKHISEIIERGIR  210 (459)
T ss_pred             HHHHHHHHHhhcCCC-chhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhh
Confidence            999998887765444 4567776554 45678899999999998887754

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.05  E-value=9.1e-06  Score=71.77  Aligned_cols=259  Identities=14%  Similarity=0.074  Sum_probs=134.5

Q ss_pred             cCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcc
Q 048269          171 EWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSI-DVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLS  249 (465)
Q Consensus       171 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~  249 (465)
                      ..++-|+.....+.+.+...|+.++|+..|+..+..  .|+. .......-.+.+.|+++....+...+....- - +..
T Consensus       226 ~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~-~-ta~  301 (564)
T KOG1174|consen  226 TTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK-Y-TAS  301 (564)
T ss_pred             ccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh-c-chh
Confidence            445555555555556666666666666555555443  1211 1111112223344555554444444432210 0 222


Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC---CCHhhHHHHHHHHHh
Q 048269          250 TYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK---PDISLYHGLIKGLLR  326 (465)
Q Consensus       250 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~  326 (465)
                      .|-.-........+++.|+.+-++.++.+.. +...|-.-...+...++.++|.-.|+....   -+...|.-|+.+|..
T Consensus       302 ~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA  380 (564)
T KOG1174|consen  302 HWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLA  380 (564)
T ss_pred             hhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHh
Confidence            2333333333444555555555555443211 222333333344555555555555555444   345555555555555


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHhhcccC---------CCCCC--Cc-hHHHHHHHHHHHhcCCHHHHHH
Q 048269          327 LRRAREATQVFREMIKRGCEPTMHTYIMLL-QGHLGKRG---------RKGPD--PL-VNFDTIFVGGLVKAGKSLDAAK  393 (465)
Q Consensus       327 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll-~~~~~~~~---------~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~  393 (465)
                      .|.+.+|.-+-++..+. +.-+..+...+- ..|+-...         .++++  |+ ....+.+...+...|..+.++.
T Consensus       381 ~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~  459 (564)
T KOG1174|consen  381 QKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIK  459 (564)
T ss_pred             hchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHH
Confidence            55555555444443322 112222222210 11110000         22222  22 2334556667789999999999


Q ss_pred             HHHHHHhCCCCCCHhhHHHHHHHHhhccchHHHHHHHHHHHHcC
Q 048269          394 YVERVMNRGVEVPRFDYNKFLHYYSNEEGVVMFEEVGKKLREVG  437 (465)
Q Consensus       394 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g  437 (465)
                      ++++...  ..||....+.|...+...+.++++.+.+....+.+
T Consensus       460 LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d  501 (564)
T KOG1174|consen  460 LLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD  501 (564)
T ss_pred             HHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence            9999886  57999999999999999999999999999888764

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.02  E-value=1.9e-05  Score=73.70  Aligned_cols=366  Identities=10%  Similarity=0.095  Sum_probs=198.2

Q ss_pred             HHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC------CCCCHHHHH
Q 048269           74 SITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCG------CEYSLEMLN  147 (465)
Q Consensus        74 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~  147 (465)
                      ...|...+......|-++-++.++++..+..+   ..-+--+..+++.+++++|-+.+.......      .+.+-..|.
T Consensus       138 ~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P---~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~  214 (835)
T KOG2047|consen  138 DRIWDLYLKFVESHGLPETSIRVYRRYLKVAP---EAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWL  214 (835)
T ss_pred             ccchHHHHHHHHhCCChHHHHHHHHHHHhcCH---HHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHH
Confidence            34444555555555556666666666555432   234555666667777777777666654321      133444555


Q ss_pred             HHHHHHHcCCCHHHH---HHHHHHhhcCCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHH
Q 048269          148 KVVKTLCQRKLVVEA---KYLILKLSEWIKPN--EIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETF  222 (465)
Q Consensus       148 ~ll~~~~~~~~~~~a---~~~~~~m~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~  222 (465)
                      -+-+..++.-+.-..   ..++..+.. .-+|  ...|+.|.+.|.+.|.+++|.++|++..+.  ..+..-|+.+.++|
T Consensus       215 elcdlis~~p~~~~slnvdaiiR~gi~-rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Y  291 (835)
T KOG2047|consen  215 ELCDLISQNPDKVQSLNVDAIIRGGIR-RFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAY  291 (835)
T ss_pred             HHHHHHHhCcchhcccCHHHHHHhhcc-cCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHH
Confidence            555555554333222   223333321 1223  356889999999999999999999988775  33444455555554


Q ss_pred             HhcC----------------------CHHHHHHHHHHHHHcC----------CCCCCcchHHHHHHHHHhcCChHHHHHH
Q 048269          223 FKIN----------------------KDDEAMKVFQMMRVKR----------MDDLGLSTYRIVIDWMCKRGKISQAYTM  270 (465)
Q Consensus       223 ~~~g----------------------~~~~A~~~~~~m~~~~----------~~~~~~~~~~~li~~~~~~~~~~~a~~~  270 (465)
                      +.-.                      +++....-|+.+...+          -.|.++..|..-..  ...|+..+....
T Consensus       292 a~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~t  369 (835)
T KOG2047|consen  292 AQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINT  369 (835)
T ss_pred             HHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHH
Confidence            4321                      1222333444443321          11223333433332  235667777888


Q ss_pred             HHHHHHCCCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCH-------hhHHHHHHHHHhcCCHHHHHHHH
Q 048269          271 LEEMFKRGIEA------DNLTLSSIIYGLLARGRLREAYKVVEEIEKPDI-------SLYHGLIKGLLRLRRAREATQVF  337 (465)
Q Consensus       271 ~~~m~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~li~~~~~~~~~~~a~~~~  337 (465)
                      |.+..+. +.|      -...|..+...|-+.|+++.|..+|++..+.+.       .+|..-...=.++.+++.|+++.
T Consensus       370 yteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm  448 (835)
T KOG2047|consen  370 YTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLM  448 (835)
T ss_pred             HHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            8887764 222      234577888899999999999999999988332       23444444455678899999988


Q ss_pred             HHHHHcCCCCCHHHHHHHHHHhhcccC--CCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC------------
Q 048269          338 REMIKRGCEPTMHTYIMLLQGHLGKRG--RKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGV------------  403 (465)
Q Consensus       338 ~~m~~~~~~p~~~~~~~ll~~~~~~~~--~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~------------  403 (465)
                      +....   .|....    +..+ ....  +..+..+...|..+++.--..|-++....+++++.+..+            
T Consensus       449 ~~A~~---vP~~~~----~~~y-d~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmf  520 (835)
T KOG2047|consen  449 RRATH---VPTNPE----LEYY-DNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMF  520 (835)
T ss_pred             Hhhhc---CCCchh----hhhh-cCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            77753   333221    1111 1000  111112233444444444455555555555555543221            


Q ss_pred             ----------------------CCCHh-hHHHHHHHHhhc---cchHHHHHHHHHHHHcCCCCc--hhHHHHHHHHHhHH
Q 048269          404 ----------------------EVPRF-DYNKFLHYYSNE---EGVVMFEEVGKKLREVGLADL--ADIFQRYGKKMATR  455 (465)
Q Consensus       404 ----------------------~p~~~-~~~~ll~~~~~~---g~~~~a~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~  455 (465)
                                            -|+.. .|+..+.-+.+.   ...+.|..+|++.++ |-+|.  ..+|-.|....+.-
T Consensus       521 LEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~  599 (835)
T KOG2047|consen  521 LEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEH  599 (835)
T ss_pred             HHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHh
Confidence                                  23433 566555555442   356777777777776 32222  23445555555544


Q ss_pred             hh
Q 048269          456 ER  457 (465)
Q Consensus       456 ~~  457 (465)
                      +.
T Consensus       600 GL  601 (835)
T KOG2047|consen  600 GL  601 (835)
T ss_pred             hH
Confidence            43

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.00  E-value=7.5e-06  Score=77.87  Aligned_cols=207  Identities=10%  Similarity=0.060  Sum_probs=133.9

Q ss_pred             cCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-CHH
Q 048269           66 AQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEY-SLE  144 (465)
Q Consensus        66 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~  144 (465)
                      ....+..++..|..+.-++.+.|+++.+.+.|++....-......|..+...+...|.-..|+.+++.-....-.| +..
T Consensus       315 r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s  394 (799)
T KOG4162|consen  315 RLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDIS  394 (799)
T ss_pred             HHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcch
Confidence            3345667999999999999999999999999999876655667789999999999999999999988765533223 444


Q ss_pred             HHHHHHHHHH-cCCCHHHHHHHHHHhhc--C---CCCCHHhHHHHHHHHHhc-----------CCHHHHHHHHHHHHHCC
Q 048269          145 MLNKVVKTLC-QRKLVVEAKYLILKLSE--W---IKPNEIAYGWLIKGYCDV-----------GDLIEASKIWNLMTDEG  207 (465)
Q Consensus       145 ~~~~ll~~~~-~~~~~~~a~~~~~~m~~--~---~~~~~~~~~~li~~~~~~-----------g~~~~a~~~~~~m~~~g  207 (465)
                      .+-..-..|. +.+..++++.+-.+...  +   -......|..+.-+|...           ....++++.+++..+.+
T Consensus       395 ~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d  474 (799)
T KOG4162|consen  395 VLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD  474 (799)
T ss_pred             HHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC
Confidence            4443334444 34566666655555441  1   112223344443333321           12345666777776643


Q ss_pred             C-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 048269          208 F-EPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMF  275 (465)
Q Consensus       208 ~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  275 (465)
                      . .|+...|  +.--|+..++.+.|.+..++..+.+..- +...|..+.-.+...+++.+|+.+.+...
T Consensus       475 ~~dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~-~~~~whLLALvlSa~kr~~~Al~vvd~al  540 (799)
T KOG4162|consen  475 PTDPLVIFY--LALQYAEQRQLTSALDYAREALALNRGD-SAKAWHLLALVLSAQKRLKEALDVVDAAL  540 (799)
T ss_pred             CCCchHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence            2 2333333  3333556677888888888877764444 67777777777777788888877776554

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.96  E-value=1.1e-05  Score=73.65  Aligned_cols=138  Identities=13%  Similarity=0.124  Sum_probs=107.0

Q ss_pred             HHHHHHHHHHhcC----CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhhcccC---------
Q 048269          299 LREAYKVVEEIEK----PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEP-TMHTYIMLLQGHLGKRG---------  364 (465)
Q Consensus       299 ~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~---------  364 (465)
                      .+.....++++..    .-.-+|..++..-.+..-...|..+|.+..+.+..+ ....+..++..+|.+..         
T Consensus       347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeL  426 (656)
T KOG1914|consen  347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFEL  426 (656)
T ss_pred             hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHH
Confidence            4455555555554    333457777777777888888999999998888777 77788888888877666         


Q ss_pred             -CCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--hhHHHHHHHHhhccchHHHHHHHHHHHHc
Q 048269          365 -RKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPR--FDYNKFLHYYSNEEGVVMFEEVGKKLREV  436 (465)
Q Consensus       365 -~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  436 (465)
                       -+.+..++..-...+.-+...|+-..|..+|++....++.|+.  .+|..+|.--++-|+...+.++-+++...
T Consensus       427 GLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a  501 (656)
T KOG1914|consen  427 GLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA  501 (656)
T ss_pred             HHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence             2334444555578888899999999999999999998777765  49999999999999999999998888765

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.94  E-value=1.3e-05  Score=69.37  Aligned_cols=203  Identities=15%  Similarity=0.133  Sum_probs=128.0

Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHH-----HHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHH
Q 048269          178 IAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMI-----ETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYR  252 (465)
Q Consensus       178 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li-----~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~  252 (465)
                      .+-..|+-.|.+.+++++|..+.+++.-  ..|-......++     .-........-|.+.|+..-..+..-.+...-.
T Consensus       286 EARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQ  363 (557)
T KOG3785|consen  286 EARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQ  363 (557)
T ss_pred             HhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchH
Confidence            3445566678899999999988877632  122222222222     222223345667777776665555543444566


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC---CCHhhHHH-HHHHHHhcC
Q 048269          253 IVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK---PDISLYHG-LIKGLLRLR  328 (465)
Q Consensus       253 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~-li~~~~~~~  328 (465)
                      ++..++.-..++++++-+++.....-..-|.. .-.+..+++..|.+.+|+++|-.+..   .|-.+|.. |.++|.+.+
T Consensus       364 smAs~fFL~~qFddVl~YlnSi~sYF~NdD~F-n~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nk  442 (557)
T KOG3785|consen  364 SMASYFFLSFQFDDVLTYLNSIESYFTNDDDF-NLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNK  442 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCcchh-hhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcC
Confidence            77777778888999999888887764443333 34577889999999999999998887   45566655 456788999


Q ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh
Q 048269          329 RAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRF  408 (465)
Q Consensus       329 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~  408 (465)
                      .++.|++++-++   ..+.+..+...+|.-                      -|.+++.+--|.+.|+.+..  ..|++.
T Consensus       443 kP~lAW~~~lk~---~t~~e~fsLLqlIAn----------------------~CYk~~eFyyaaKAFd~lE~--lDP~pE  495 (557)
T KOG3785|consen  443 KPQLAWDMMLKT---NTPSERFSLLQLIAN----------------------DCYKANEFYYAAKAFDELEI--LDPTPE  495 (557)
T ss_pred             CchHHHHHHHhc---CCchhHHHHHHHHHH----------------------HHHHHHHHHHHHHhhhHHHc--cCCCcc
Confidence            999998887665   333334443333332                      23566666666666666554  344444


Q ss_pred             hH
Q 048269          409 DY  410 (465)
Q Consensus       409 ~~  410 (465)
                      -|
T Consensus       496 nW  497 (557)
T KOG3785|consen  496 NW  497 (557)
T ss_pred             cc
Confidence            33

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.93  E-value=1.3e-07  Score=83.41  Aligned_cols=246  Identities=16%  Similarity=0.107  Sum_probs=150.7

Q ss_pred             HHHHhcCChhHHHHHHHHHhhCCC-CChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHH
Q 048269           82 DIIGKSRNIDLFWETLQEMGRRRL-VNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVV  160 (465)
Q Consensus        82 ~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~  160 (465)
                      +-+.-.|++..++.-.+ ....+. ........+.+++...|+++.++   .++.+.. .|.......+...+...++-+
T Consensus         9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e   83 (290)
T PF04733_consen    9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKE   83 (290)
T ss_dssp             HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred             HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence            34445677777775555 222222 23345666778888888876543   4444433 566665555555444445566


Q ss_pred             HHHHHHHHhh-cCCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048269          161 EAKYLILKLS-EWIK-PNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMM  238 (465)
Q Consensus       161 ~a~~~~~~m~-~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  238 (465)
                      .++.-+++.. .... .+..........+...|++++|+++++.-      .+.......+..|.+.++++.|.+.++.|
T Consensus        84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~  157 (290)
T PF04733_consen   84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM  157 (290)
T ss_dssp             CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            6666665554 3222 23333333345566678888888877542      35667777888888888888888888888


Q ss_pred             HHcCCCCCCcchHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC---
Q 048269          239 RVKRMDDLGLSTYRIVIDWMCK----RGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK---  311 (465)
Q Consensus       239 ~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---  311 (465)
                      .+.  .  +..+...+..++..    .+.+.+|..+|+++... ..+++.+.+.+..++...|++++|..++.+...   
T Consensus       158 ~~~--~--eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~  232 (290)
T PF04733_consen  158 QQI--D--EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP  232 (290)
T ss_dssp             HCC--S--CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C
T ss_pred             Hhc--C--CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence            754  2  33344445544432    33688888888887654 456778888888888888888888888888776   


Q ss_pred             CCHhhHHHHHHHHHhcCCH-HHHHHHHHHHHHc
Q 048269          312 PDISLYHGLIKGLLRLRRA-REATQVFREMIKR  343 (465)
Q Consensus       312 ~~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~~  343 (465)
                      .+..+...++.+....|+. +.+.+.+.++...
T Consensus       233 ~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~  265 (290)
T PF04733_consen  233 NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS  265 (290)
T ss_dssp             CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred             CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence            4455555666666666766 6667777777644

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.93  E-value=1.7e-07  Score=85.91  Aligned_cols=245  Identities=12%  Similarity=0.041  Sum_probs=181.8

Q ss_pred             HHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHH
Q 048269           82 DIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVE  161 (465)
Q Consensus        82 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~  161 (465)
                      .-+.+.|++.+|.-.|+...+.++-...+|..|.......++-..|+..+++..+.. +-|....-.|.-.|...|.-..
T Consensus       293 ~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~  371 (579)
T KOG1125|consen  293 CNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQ  371 (579)
T ss_pred             HHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHH
Confidence            345788999999999999999998888999999999999999999999999999875 5677888888888999999999


Q ss_pred             HHHHHHHhhcCCCC---------CHHhHHHHHHHHHhcCCHHHHHHHHHHH-HHCCCCCcHHHHHHHHHHHHhcCCHHHH
Q 048269          162 AKYLILKLSEWIKP---------NEIAYGWLIKGYCDVGDLIEASKIWNLM-TDEGFEPSIDVVDKMIETFFKINKDDEA  231 (465)
Q Consensus       162 a~~~~~~m~~~~~~---------~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~g~~~~~~~~~~li~~~~~~g~~~~A  231 (465)
                      |...++.-...-+|         +...-..  +.+.....+....++|-++ .+.+..+|..+...|.-.|.-.|++++|
T Consensus       372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra  449 (579)
T KOG1125|consen  372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA  449 (579)
T ss_pred             HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence            99998886411111         1100000  1222223344555555555 4455557888888999999999999999


Q ss_pred             HHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 048269          232 MKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEAD-NLTLSSIIYGLLARGRLREAYKVVEEIE  310 (465)
Q Consensus       232 ~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~  310 (465)
                      .+.|+.....  .|.|...||.|...++...+.++|+..|.+.++.  .|. +.+.-.|.-+|.+.|.+++|.+.|-...
T Consensus       450 iDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL  525 (579)
T KOG1125|consen  450 VDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL  525 (579)
T ss_pred             HHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence            9999999865  7778899999999999999999999999999876  443 2333445557899999999998887654


Q ss_pred             C-------------CCHhhHHHHHHHHHhcCCHHHH
Q 048269          311 K-------------PDISLYHGLIKGLLRLRRAREA  333 (465)
Q Consensus       311 ~-------------~~~~~~~~li~~~~~~~~~~~a  333 (465)
                      .             ++...|..|=.++.-.++.|-+
T Consensus       526 ~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l  561 (579)
T KOG1125|consen  526 SMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLL  561 (579)
T ss_pred             HhhhcccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence            3             2234555555555555555533

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.92  E-value=1.5e-05  Score=75.88  Aligned_cols=349  Identities=10%  Similarity=-0.027  Sum_probs=226.2

Q ss_pred             CChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh-cC-CCCCHHhHHHH
Q 048269          106 VNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLS-EW-IKPNEIAYGWL  183 (465)
Q Consensus       106 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~-~~-~~~~~~~~~~l  183 (465)
                      .++..|..+.-+..+.|+++.+.+.|++.... .......|+.+...|...|.-..|..+++.-. .. .++|...+-..
T Consensus       321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma  399 (799)
T KOG4162|consen  321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA  399 (799)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence            36778888999999999999999999998763 34567789999999999999999999998876 22 24455555444


Q ss_pred             HHHHHhc-CCHHHHHHHHHHHHHC--CC--CCcHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHcCCCCCC
Q 048269          184 IKGYCDV-GDLIEASKIWNLMTDE--GF--EPSIDVVDKMIETFFKI-----------NKDDEAMKVFQMMRVKRMDDLG  247 (465)
Q Consensus       184 i~~~~~~-g~~~~a~~~~~~m~~~--g~--~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~~~~~~~  247 (465)
                      -+.|.+. +..++++.+-.+....  |.  ......|..+.-+|...           ....++.+.+++..+.+  |.|
T Consensus       400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d--~~d  477 (799)
T KOG4162|consen  400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD--PTD  477 (799)
T ss_pred             HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC--CCC
Confidence            4555543 6677777766666551  11  12344455555555432           22456778888887663  335


Q ss_pred             cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC--CC-HhhHHHHHHHH
Q 048269          248 LSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK--PD-ISLYHGLIKGL  324 (465)
Q Consensus       248 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~li~~~  324 (465)
                      +...-.+.--|+-.++++.|.+...+..+.+-.-+...|..+.-.+...+++.+|+.+.+....  ++ ......-+..-
T Consensus       478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~  557 (799)
T KOG4162|consen  478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIE  557 (799)
T ss_pred             chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhh
Confidence            5555555556788899999999999999887677899999999999999999999999987765  22 11111111111


Q ss_pred             HhcCCHHHHHHHHHHHHH---------------------cCC-----CC--CHHHHHHHHHHhhcccC------------
Q 048269          325 LRLRRAREATQVFREMIK---------------------RGC-----EP--TMHTYIMLLQGHLGKRG------------  364 (465)
Q Consensus       325 ~~~~~~~~a~~~~~~m~~---------------------~~~-----~p--~~~~~~~ll~~~~~~~~------------  364 (465)
                      ...++.++++.....+..                     .|.     .|  ...++..+..-......            
T Consensus       558 ~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~  637 (799)
T KOG4162|consen  558 LTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSST  637 (799)
T ss_pred             hhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCccc
Confidence            223444444433332221                     000     01  11222222221111110            


Q ss_pred             ---------------------------------------CCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 048269          365 ---------------------------------------RKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEV  405 (465)
Q Consensus       365 ---------------------------------------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p  405 (465)
                                                             ..-.+.....|......+...|.+++|.+.|.....  +.|
T Consensus       638 ~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP  715 (799)
T KOG4162|consen  638 VLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDP  715 (799)
T ss_pred             ccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCC
Confidence                                                   111112223445555566677888888888877775  677


Q ss_pred             CHh-hHHHHHHHHhhccchHHHHH--HHHHHHHcCCCCchhHHHHHHHHHhHHhhhhh
Q 048269          406 PRF-DYNKFLHYYSNEEGVVMFEE--VGKKLREVGLADLADIFQRYGKKMATRERRRN  460 (465)
Q Consensus       406 ~~~-~~~~ll~~~~~~g~~~~a~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  460 (465)
                      +.. +..++...+.+.|+...+..  ++..+.+.+.. ....|..+|++++.++....
T Consensus       716 ~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~  772 (799)
T KOG4162|consen  716 DHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQ  772 (799)
T ss_pred             CCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHH
Confidence            655 88899999999998888887  99999988754 56677788888888776544

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.89  E-value=1.7e-06  Score=87.04  Aligned_cols=243  Identities=10%  Similarity=0.057  Sum_probs=189.7

Q ss_pred             ChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCC-----ChHHHHHHHHHHHhcCCHHH
Q 048269           52 SWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLV-----NDKTFKIALMTLAEVRELKK  126 (465)
Q Consensus        52 ~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~  126 (465)
                      .|..|..+-... ...|+   +...|-..|....+.++.++|.++++++...=-+     -...|.++++.-...|.-+.
T Consensus      1440 ~pesaeDferlv-rssPN---SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~ees 1515 (1710)
T KOG1070|consen 1440 APESAEDFERLV-RSSPN---SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEES 1515 (1710)
T ss_pred             CCcCHHHHHHHH-hcCCC---cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHH
Confidence            455666666665 77766   8888999999999999999999999998764211     23478888888888888899


Q ss_pred             HHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048269          127 MVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDE  206 (465)
Q Consensus       127 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  206 (465)
                      ..++|+++.+.-  -.-.+|..|...|.+.+..++|.++++.|...+......|...+..+.+..+-+.|..++.+..+.
T Consensus      1516 l~kVFeRAcqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~ 1593 (1710)
T KOG1070|consen 1516 LKKVFERACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKS 1593 (1710)
T ss_pred             HHHHHHHHHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh
Confidence            999999998852  234568889999999999999999999999666677888999999999999999999999988875


Q ss_pred             CCCCc---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-
Q 048269          207 GFEPS---IDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEAD-  282 (465)
Q Consensus       207 g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-  282 (465)
                        -|.   .......+..-.+.|+.+.+..+|+.....  .|.-...|+..|+.=.++|+.+.+..+|++....++.|- 
T Consensus      1594 --lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a--yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kk 1669 (1710)
T KOG1070|consen 1594 --LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSA--YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKK 1669 (1710)
T ss_pred             --cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh--CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhH
Confidence              333   344455566667889999999999998876  565778999999999999999999999999998877653 


Q ss_pred             -HHHHHHHHHHHHhcCCHHHHHH
Q 048269          283 -NLTLSSIIYGLLARGRLREAYK  304 (465)
Q Consensus       283 -~~~~~~li~~~~~~~~~~~a~~  304 (465)
                       -..|...+..-.+.|+-+.+..
T Consensus      1670 mKfffKkwLeyEk~~Gde~~vE~ 1692 (1710)
T KOG1070|consen 1670 MKFFFKKWLEYEKSHGDEKNVEY 1692 (1710)
T ss_pred             hHHHHHHHHHHHHhcCchhhHHH
Confidence             2344555554445555444443

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.87  E-value=2.8e-07  Score=81.28  Aligned_cols=251  Identities=15%  Similarity=0.148  Sum_probs=166.0

Q ss_pred             HHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHH
Q 048269          116 MTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIE  195 (465)
Q Consensus       116 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~  195 (465)
                      +.+.-.|++..++.-.+ .....-..+......+.+++...|+.+.+   +.++..+-.|.......+...+...++-+.
T Consensus         9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~v---l~ei~~~~~~~l~av~~la~y~~~~~~~e~   84 (290)
T PF04733_consen    9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSV---LSEIKKSSSPELQAVRLLAEYLSSPSDKES   84 (290)
T ss_dssp             HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHH---HHHS-TTSSCCCHHHHHHHHHHCTSTTHHC
T ss_pred             HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHH---HHHhccCCChhHHHHHHHHHHHhCccchHH
Confidence            44555688888887666 33322223344555677888899987754   455553447777777666665555455666


Q ss_pred             HHHHHHHHHHCCCC-CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 048269          196 ASKIWNLMTDEGFE-PSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEM  274 (465)
Q Consensus       196 a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m  274 (465)
                      +..-+++....+.. .+..........+...|++++|++++...      . +.......+..|.+.++++.|.+.++.|
T Consensus        85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~-~lE~~al~Vqi~L~~~R~dlA~k~l~~~  157 (290)
T PF04733_consen   85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------G-SLELLALAVQILLKMNRPDLAEKELKNM  157 (290)
T ss_dssp             HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------T-CHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------C-cccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            66655554444333 23334444445677889999999988642      2 6778888899999999999999999999


Q ss_pred             HHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhcC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 048269          275 FKRGIEADNLTLSSIIYGLLA----RGRLREAYKVVEEIEK---PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEP  347 (465)
Q Consensus       275 ~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p  347 (465)
                      .+.+   +..+...+..++..    .+.+.+|..+|+++.+   +++.+.+.+..++...|++++|.+++.+..+.  .|
T Consensus       158 ~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~--~~  232 (290)
T PF04733_consen  158 QQID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK--DP  232 (290)
T ss_dssp             HCCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---C
T ss_pred             HhcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--cc
Confidence            8763   34555555555443    3479999999999988   77788888999999999999999999998743  44


Q ss_pred             CH-HHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCH
Q 048269          348 TM-HTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKS-LDAAKYVERVMNRGVEVPR  407 (465)
Q Consensus       348 ~~-~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~~~p~~  407 (465)
                      +. .+...                       +|.+....|+. +.+.+++.++...  .|+.
T Consensus       233 ~~~d~LaN-----------------------liv~~~~~gk~~~~~~~~l~qL~~~--~p~h  269 (290)
T PF04733_consen  233 NDPDTLAN-----------------------LIVCSLHLGKPTEAAERYLSQLKQS--NPNH  269 (290)
T ss_dssp             CHHHHHHH-----------------------HHHHHHHTT-TCHHHHHHHHHCHHH--TTTS
T ss_pred             CCHHHHHH-----------------------HHHHHHHhCCChhHHHHHHHHHHHh--CCCC
Confidence            43 22222                       33344677777 6677888888863  5553

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PLN02789 farnesyltranstransferase

Probab=98.86  E-value=6e-06  Score=73.89  Aligned_cols=207  Identities=9%  Similarity=0.006  Sum_probs=149.0

Q ss_pred             HHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcC-CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCC--HH
Q 048269           84 IGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVR-ELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKL--VV  160 (465)
Q Consensus        84 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~--~~  160 (465)
                      +...++.++|+.+.+++.+.++.+..+|+.-..++...| ++++++..++.+.+.. +.+..+|+....++.+.|.  .+
T Consensus        47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~  125 (320)
T PLN02789         47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAAN  125 (320)
T ss_pred             HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhH
Confidence            444567888999999998888777777777777777777 5788999998888765 4566667766555555665  36


Q ss_pred             HHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhc---CCH----HHHHH
Q 048269          161 EAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKI---NKD----DEAMK  233 (465)
Q Consensus       161 ~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~---g~~----~~A~~  233 (465)
                      ++..+++++....+-|..+|+...-++...|+++++++.++++.+.+.. |...|+.....+.+.   |..    ++.++
T Consensus       126 ~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~  204 (320)
T PLN02789        126 KELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELK  204 (320)
T ss_pred             HHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHH
Confidence            7788888888666778888988888888889999999999999887643 566676666555444   222    45677


Q ss_pred             HHHHHHHcCCCCCCcchHHHHHHHHHhc----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048269          234 VFQMMRVKRMDDLGLSTYRIVIDWMCKR----GKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLA  295 (465)
Q Consensus       234 ~~~~m~~~~~~~~~~~~~~~li~~~~~~----~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  295 (465)
                      ...++...  .|.+...|+-+...+...    +...+|...+.+....++ .+......|+..|+.
T Consensus       205 y~~~aI~~--~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~al~~l~d~~~~  267 (320)
T PLN02789        205 YTIDAILA--NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFALSDLLDLLCE  267 (320)
T ss_pred             HHHHHHHh--CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHHHHHHHHHHHh
Confidence            77666655  566888898888888773    334567777777666543 356677777777764

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.85  E-value=5e-05  Score=69.59  Aligned_cols=350  Identities=13%  Similarity=0.071  Sum_probs=209.4

Q ss_pred             CChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 048269           51 LSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNF  130 (465)
Q Consensus        51 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  130 (465)
                      .+.+.|...|..+++.+++   |...|..-..+|...|++++|++=-.+-.+.++.=+..|+....++.-.|++++|+..
T Consensus        16 ~d~~~ai~~~t~ai~l~p~---nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~a   92 (539)
T KOG0548|consen   16 GDFETAIRLFTEAIMLSPT---NHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILA   92 (539)
T ss_pred             ccHHHHHHHHHHHHccCCC---ccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHH
Confidence            3889999999999888876   9999999999999999999998877777666654446899999999999999999999


Q ss_pred             HHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHh--hcCCCCC--------HHhHHHHHHHH----------Hhc
Q 048269          131 FHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKL--SEWIKPN--------EIAYGWLIKGY----------CDV  190 (465)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m--~~~~~~~--------~~~~~~li~~~----------~~~  190 (465)
                      |.+-++.. +.+...++.+..++...  . .+.+.|..-  ..+..-+        ...|..++..+          ...
T Consensus        93 y~~GL~~d-~~n~~L~~gl~~a~~~~--~-~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d  168 (539)
T KOG0548|consen   93 YSEGLEKD-PSNKQLKTGLAQAYLED--Y-AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLND  168 (539)
T ss_pred             HHHHhhcC-CchHHHHHhHHHhhhHH--H-HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccccc
Confidence            99988764 45566666676666111  0 001111100  0000001        11122222211          111


Q ss_pred             CCHHHHHHHHHH-----HHHCC-------CCC----------------------cHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048269          191 GDLIEASKIWNL-----MTDEG-------FEP----------------------SIDVVDKMIETFFKINKDDEAMKVFQ  236 (465)
Q Consensus       191 g~~~~a~~~~~~-----m~~~g-------~~~----------------------~~~~~~~li~~~~~~g~~~~A~~~~~  236 (465)
                      ..+..+..++..     +...|       ..|                      -..-...+.++..+..+++.|++.+.
T Consensus       169 ~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~  248 (539)
T KOG0548|consen  169 PRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYA  248 (539)
T ss_pred             HHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHH
Confidence            111111111110     00001       111                      01123556677777778888888877


Q ss_pred             HHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH-------HHHHHHhcCCHHHHHHHHHHh
Q 048269          237 MMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSS-------IIYGLLARGRLREAYKVVEEI  309 (465)
Q Consensus       237 ~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~-------li~~~~~~~~~~~a~~~~~~~  309 (465)
                      ......  - +..-++....+|...|.+..+...-+...+.|.. ...-|+.       +..+|.+.++++.+...|.+.
T Consensus       249 ~a~el~--~-~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ka  324 (539)
T KOG0548|consen  249 KALELA--T-DITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKA  324 (539)
T ss_pred             HHHhHh--h-hhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHH
Confidence            776653  2 5556666677777777777776666666555432 1222222       223455566777777777665


Q ss_pred             cC----CCHhh-------------------------HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhh
Q 048269          310 EK----PDISL-------------------------YHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHL  360 (465)
Q Consensus       310 ~~----~~~~~-------------------------~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~  360 (465)
                      ..    |+...                         ...=...+.+.|++..|+..|.+++...  |+..+..+--.+| 
T Consensus       325 Lte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~--P~Da~lYsNRAac-  401 (539)
T KOG0548|consen  325 LTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD--PEDARLYSNRAAC-  401 (539)
T ss_pred             hhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC--CchhHHHHHHHHH-
Confidence            44    11111                         1111344677899999999999998663  6655444433333 


Q ss_pred             cccCCCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh-hHHHHHHHHhhccchHHHHHHHHHHHHcC
Q 048269          361 GKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRF-DYNKFLHYYSNEEGVVMFEEVGKKLREVG  437 (465)
Q Consensus       361 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~g  437 (465)
                                           |.+.|.+..|+.-.+...+.  .|+.. -|..=..++.-..+++.|.+.+++-++.+
T Consensus       402 ---------------------~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d  456 (539)
T KOG0548|consen  402 ---------------------YLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD  456 (539)
T ss_pred             ---------------------HHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence                                 57777777777777766653  44432 44444445555677777777777777765

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.84  E-value=2.7e-05  Score=67.22  Aligned_cols=318  Identities=10%  Similarity=-0.007  Sum_probs=172.2

Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHH-HHHHH
Q 048269           73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEML-NKVVK  151 (465)
Q Consensus        73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~ll~  151 (465)
                      ++.-.--+-..+...|++.+|+..|....+.++.+-.++..-...|...|+...|+.-+....+.  +||-..- -.-..
T Consensus        37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~  114 (504)
T KOG0624|consen   37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGV  114 (504)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhch
Confidence            44445567778888899999999999988877666555666667788888888888888888774  5664332 12334


Q ss_pred             HHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHH
Q 048269          152 TLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEA  231 (465)
Q Consensus       152 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A  231 (465)
                      .+.+.|.++.|..=|+.+.... |+..+   ...++.+.--.++-+.                ....+..+.-.|+...|
T Consensus       115 vllK~Gele~A~~DF~~vl~~~-~s~~~---~~eaqskl~~~~e~~~----------------l~~ql~s~~~~GD~~~a  174 (504)
T KOG0624|consen  115 VLLKQGELEQAEADFDQVLQHE-PSNGL---VLEAQSKLALIQEHWV----------------LVQQLKSASGSGDCQNA  174 (504)
T ss_pred             hhhhcccHHHHHHHHHHHHhcC-CCcch---hHHHHHHHHhHHHHHH----------------HHHHHHHHhcCCchhhH
Confidence            5778899999999998887221 21111   0111111111111111                11222233445555555


Q ss_pred             HHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC
Q 048269          232 MKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK  311 (465)
Q Consensus       232 ~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~  311 (465)
                      ++....+.+-  .|-+...|..-..+|...|++..|+.=++...+..-. +..++-.+-..+...|+.+.++...++..+
T Consensus       175 i~~i~~llEi--~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLK  251 (504)
T KOG0624|consen  175 IEMITHLLEI--QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLK  251 (504)
T ss_pred             HHHHHHHHhc--CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHc
Confidence            5555555543  3335555555555555555555555544444333211 333333444445555555555555555555


Q ss_pred             --CCHhhHHHH-------------HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccCCCCCCCchHHHH
Q 048269          312 --PDISLYHGL-------------IKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDT  376 (465)
Q Consensus       312 --~~~~~~~~l-------------i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~  376 (465)
                        ||...+-..             +......++|.++++-.+...+..-.....+++                    .+.
T Consensus       252 ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~--------------------~~r  311 (504)
T KOG0624|consen  252 LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYN--------------------GFR  311 (504)
T ss_pred             cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeee--------------------eeh
Confidence              332221110             111233444555555554444332111122222                    122


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHhhccchHHHHHHHHHHHHcC
Q 048269          377 IFVGGLVKAGKSLDAAKYVERVMNRGVEVP-RFDYNKFLHYYSNEEGVVMFEEVGKKLREVG  437 (465)
Q Consensus       377 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g  437 (465)
                      .+-.+|...|++.+|++...+..+  +.|| ..++--=..+|.-..+++.|..-+++..+.+
T Consensus       312 ~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n  371 (504)
T KOG0624|consen  312 VLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN  371 (504)
T ss_pred             eeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence            333445666777777777777765  4555 4466666666666677777777776666553

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.84  E-value=6.2e-07  Score=84.49  Aligned_cols=238  Identities=11%  Similarity=0.029  Sum_probs=191.6

Q ss_pred             CCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHH
Q 048269           68 PCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLN  147 (465)
Q Consensus        68 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  147 (465)
                      ++++|-...-..+...+...|-...|..+|++..        .|.-++.+|...|+..+|..+..+..+.  +|+...|.
T Consensus       392 ~~lpp~Wq~q~~laell~slGitksAl~I~Erle--------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc  461 (777)
T KOG1128|consen  392 PHLPPIWQLQRLLAELLLSLGITKSALVIFERLE--------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYC  461 (777)
T ss_pred             CCCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH--------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHH
Confidence            3555666666778889999999999999999874        4788899999999999999998888773  79999999


Q ss_pred             HHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCC
Q 048269          148 KVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINK  227 (465)
Q Consensus       148 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~  227 (465)
                      .+.+......-+++|.++.+....+      +-..+.....+.++++++.+.|+.-.+.. +....+|-.+..+..+.++
T Consensus       462 ~LGDv~~d~s~yEkawElsn~~sar------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek  534 (777)
T KOG1128|consen  462 LLGDVLHDPSLYEKAWELSNYISAR------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEK  534 (777)
T ss_pred             HhhhhccChHHHHHHHHHhhhhhHH------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhh
Confidence            9999988888899999999886522      22222223344789999999998877653 3467889999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048269          228 DDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVE  307 (465)
Q Consensus       228 ~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~  307 (465)
                      ++.|.+.|......  .|.+...||.+-.+|.+.++..+|...+.+..+.+ .-+...|...+....+.|.+++|.+.+.
T Consensus       535 ~q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~  611 (777)
T KOG1128|consen  535 EQAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYH  611 (777)
T ss_pred             hHHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHH
Confidence            99999999988754  67678899999999999999999999999999887 4466777777778899999999999999


Q ss_pred             HhcC-----CCHhhHHHHHHHHH
Q 048269          308 EIEK-----PDISLYHGLIKGLL  325 (465)
Q Consensus       308 ~~~~-----~~~~~~~~li~~~~  325 (465)
                      ++..     .|..+-..++....
T Consensus       612 rll~~~~~~~d~~vl~~iv~~~~  634 (777)
T KOG1128|consen  612 RLLDLRKKYKDDEVLLIIVRTVL  634 (777)
T ss_pred             HHHHhhhhcccchhhHHHHHHHH
Confidence            8876     44445444544433

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.79  E-value=6.3e-05  Score=79.09  Aligned_cols=322  Identities=13%  Similarity=-0.010  Sum_probs=195.2

Q ss_pred             HHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCC-------CCC--HHhHHHHHHH
Q 048269          116 MTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWI-------KPN--EIAYGWLIKG  186 (465)
Q Consensus       116 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-------~~~--~~~~~~li~~  186 (465)
                      ......|+++.+...++.+.......+..........+...|+++++..++.......       .+.  ......+...
T Consensus       382 ~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~  461 (903)
T PRK04841        382 WSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV  461 (903)
T ss_pred             HHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence            3455567777777777665322111222223344455667899999999888765111       111  1122223345


Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCCc----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----CCcchHHHHHHHH
Q 048269          187 YCDVGDLIEASKIWNLMTDEGFEPS----IDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDD----LGLSTYRIVIDWM  258 (465)
Q Consensus       187 ~~~~g~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~----~~~~~~~~li~~~  258 (465)
                      +...|+++.|...++...+.--..+    ....+.+...+...|++++|...+++........    ....++..+...+
T Consensus       462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~  541 (903)
T PRK04841        462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL  541 (903)
T ss_pred             HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence            5678999999999998876311112    1344566667788999999999988876431111    0123445566778


Q ss_pred             HhcCChHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHhcC------C--CHhhHHHHHHH
Q 048269          259 CKRGKISQAYTMLEEMFKR----GIE--A-DNLTLSSIIYGLLARGRLREAYKVVEEIEK------P--DISLYHGLIKG  323 (465)
Q Consensus       259 ~~~~~~~~a~~~~~~m~~~----~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~------~--~~~~~~~li~~  323 (465)
                      ...|+++.|...+++....    +..  + ....+..+...+...|++++|...+.+...      +  ....+..+...
T Consensus       542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~  621 (903)
T PRK04841        542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI  621 (903)
T ss_pred             HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence            8899999999998876542    221  1 223344555667778999999998887654      1  12233445556


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHH-----HHHHhhcccC-----------CCCCCCc----hHHHHHHHHHH
Q 048269          324 LLRLRRAREATQVFREMIKRGCEP-TMHTYIM-----LLQGHLGKRG-----------RKGPDPL----VNFDTIFVGGL  382 (465)
Q Consensus       324 ~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~-----ll~~~~~~~~-----------~~~~~~~----~~~~~~li~~~  382 (465)
                      +...|++++|.+.+.+.....-.. ....+..     .+..+...++           .......    ...+..+..++
T Consensus       622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~  701 (903)
T PRK04841        622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ  701 (903)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence            778899999999988875431111 1111100     0111111111           0000011    11245677788


Q ss_pred             HhcCCHHHHHHHHHHHHhC----CCCCCH-hhHHHHHHHHhhccchHHHHHHHHHHHHcC
Q 048269          383 VKAGKSLDAAKYVERVMNR----GVEVPR-FDYNKFLHYYSNEEGVVMFEEVGKKLREVG  437 (465)
Q Consensus       383 ~~~g~~~~A~~~~~~m~~~----~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g  437 (465)
                      ...|++++|...+++....    |..++. .+...+..++.+.|+.++|...+.+..+..
T Consensus       702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la  761 (903)
T PRK04841        702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA  761 (903)
T ss_pred             HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            9999999999999988752    333322 356667778889999999999999998874

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.77  E-value=7.4e-06  Score=82.72  Aligned_cols=241  Identities=14%  Similarity=0.156  Sum_probs=167.8

Q ss_pred             HHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----cHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048269          166 ILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEP-----SIDVVDKMIETFFKINKDDEAMKVFQMMRV  240 (465)
Q Consensus       166 ~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  240 (465)
                      |+++..+.|-....|-..|......++.++|.++++++... +.+     -...|.++++.-..-|.-+...++|++..+
T Consensus      1447 ferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq 1525 (1710)
T KOG1070|consen 1447 FERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ 1525 (1710)
T ss_pred             HHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH
Confidence            34444334555677777778888888888888888887653 211     123577777777777777788888888876


Q ss_pred             cCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC--CC---Hh
Q 048269          241 KRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK--PD---IS  315 (465)
Q Consensus       241 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~---~~  315 (465)
                      .. .  ....|..|...|.+.+..++|.++++.|.+. ..-....|...+..+.+..+.+.|..++.+..+  |.   ..
T Consensus      1526 yc-d--~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~ 1601 (1710)
T KOG1070|consen 1526 YC-D--AYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVE 1601 (1710)
T ss_pred             hc-c--hHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHH
Confidence            42 1  2456788888888888888888888888875 224667788888888888888888888887776  43   23


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcCCHHHHHHHH
Q 048269          316 LYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYV  395 (465)
Q Consensus       316 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~  395 (465)
                      .....+..-.+.|+.+++..+|+..+..-  |                      .-...|+.+|+.-.++|+.+.+..+|
T Consensus      1602 ~IskfAqLEFk~GDaeRGRtlfEgll~ay--P----------------------KRtDlW~VYid~eik~~~~~~vR~lf 1657 (1710)
T KOG1070|consen 1602 FISKFAQLEFKYGDAERGRTLFEGLLSAY--P----------------------KRTDLWSVYIDMEIKHGDIKYVRDLF 1657 (1710)
T ss_pred             HHHHHHHHHhhcCCchhhHHHHHHHHhhC--c----------------------cchhHHHHHHHHHHccCCHHHHHHHH
Confidence            33334444567788888888888776441  1                      22345666777778999999999999


Q ss_pred             HHHHhCCCCCCHh--hHHHHHHHHhhccchHHHHHHHHHHHH
Q 048269          396 ERVMNRGVEVPRF--DYNKFLHYYSNEEGVVMFEEVGKKLRE  435 (465)
Q Consensus       396 ~~m~~~~~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~  435 (465)
                      ++....++.|-.-  .|...+..-.+.|+-+.++.+=.+..+
T Consensus      1658 eRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VKarA~E 1699 (1710)
T KOG1070|consen 1658 ERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVKARAKE 1699 (1710)
T ss_pred             HHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence            9999888877432  677777766667776665555444443

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.76  E-value=0.00014  Score=71.48  Aligned_cols=289  Identities=11%  Similarity=0.075  Sum_probs=154.2

Q ss_pred             CCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCC-C--ChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHH
Q 048269           72 HNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRL-V--NDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNK  148 (465)
Q Consensus        72 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  148 (465)
                      .|+......+.++...+-+.+-+++++++.-.+. .  +...-+.++-...+. +..++.++.+++...+ .|+.     
T Consensus       982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyD-a~~i----- 1054 (1666)
T KOG0985|consen  982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYD-APDI----- 1054 (1666)
T ss_pred             CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCC-chhH-----
Confidence            3666666666777777777777777776654332 1  223444444444443 3344555555554433 2221     


Q ss_pred             HHHHHHcCCCHHHHHHHHHHhhcCCCCCHH--------------------------hHHHHHHHHHhcCCHHHHHHHHHH
Q 048269          149 VVKTLCQRKLVVEAKYLILKLSEWIKPNEI--------------------------AYGWLIKGYCDVGDLIEASKIWNL  202 (465)
Q Consensus       149 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~--------------------------~~~~li~~~~~~g~~~~a~~~~~~  202 (465)
                       ...+...+-+++|..+|++..    .+..                          .|..+.++-.+.|.+.+|++-|-+
T Consensus      1055 -a~iai~~~LyEEAF~ifkkf~----~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyik 1129 (1666)
T KOG0985|consen 1055 -AEIAIENQLYEEAFAIFKKFD----MNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIK 1129 (1666)
T ss_pred             -HHHHhhhhHHHHHHHHHHHhc----ccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHh
Confidence             223334444555555555442    2333                          344444444444444444443322


Q ss_pred             HHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 048269          203 MTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEAD  282 (465)
Q Consensus       203 m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~  282 (465)
                      .      -|+..|..+++...+.|.|++-.+++...++....|   ..-+.||-+|++.+++.+..+++.       -|+
T Consensus      1130 a------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~---~id~eLi~AyAkt~rl~elE~fi~-------gpN 1193 (1666)
T KOG0985|consen 1130 A------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREP---YIDSELIFAYAKTNRLTELEEFIA-------GPN 1193 (1666)
T ss_pred             c------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCc---cchHHHHHHHHHhchHHHHHHHhc-------CCC
Confidence            1      133444455555555555555555444444433222   233344445555554444333321       233


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc
Q 048269          283 NLTLSSIIYGLLARGRLREAYKVVEEIEKPDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGK  362 (465)
Q Consensus       283 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~  362 (465)
                      ......+.+-|...+.++.|.-+|.     ++..|..|...+...|++..|.+.-++.      .+..||..+--+|...
T Consensus      1194 ~A~i~~vGdrcf~~~~y~aAkl~y~-----~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~ 1262 (1666)
T KOG0985|consen 1194 VANIQQVGDRCFEEKMYEAAKLLYS-----NVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDK 1262 (1666)
T ss_pred             chhHHHHhHHHhhhhhhHHHHHHHH-----HhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhch
Confidence            4444444444444455555544443     4456777777778888888877766554      3567777777777555


Q ss_pred             cC-------CCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048269          363 RG-------RKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVM  399 (465)
Q Consensus       363 ~~-------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  399 (465)
                      ..       ...+-....-...++..|-..|-+++-+.+++...
T Consensus      1263 ~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1263 EEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL 1306 (1666)
T ss_pred             hhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh
Confidence            54       23333445567789999999999999988887654

>PF12854 PPR_1: PPR repeat

Probab=98.75  E-value=1.3e-08  Score=57.11  Aligned_cols=32  Identities=31%  Similarity=0.622  Sum_probs=14.0

Q ss_pred             CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048269          207 GFEPSIDVVDKMIETFFKINKDDEAMKVFQMM  238 (465)
Q Consensus       207 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  238 (465)
                      |+.||..||+.||.+|++.|++++|.++|++|
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            34444444444444444444444444444443

>PF12854 PPR_1: PPR repeat

Probab=98.75  E-value=1.4e-08  Score=57.05  Aligned_cols=32  Identities=25%  Similarity=0.380  Sum_probs=24.3

Q ss_pred             CCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048269          367 GPDPLVNFDTIFVGGLVKAGKSLDAAKYVERV  398 (465)
Q Consensus       367 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  398 (465)
                      |+.||..+|++||++|++.|++++|.++|++|
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            56677777777777778888888888888776

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.75  E-value=2.3e-06  Score=74.15  Aligned_cols=188  Identities=7%  Similarity=-0.131  Sum_probs=130.3

Q ss_pred             CCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCh---HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH---H
Q 048269           71 AHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVND---KTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSL---E  144 (465)
Q Consensus        71 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~  144 (465)
                      ......+..+...+.+.|++++|...|+++....+.++   .++..+..++.+.|++++|+..++.+.+.. +.+.   .
T Consensus        30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~  108 (235)
T TIGR03302        30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDADY  108 (235)
T ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCchHH
Confidence            34677888888899999999999999999988766443   467788889999999999999999998753 1122   1


Q ss_pred             HHHHHHHHHHcC--------CCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHH
Q 048269          145 MLNKVVKTLCQR--------KLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVD  216 (465)
Q Consensus       145 ~~~~ll~~~~~~--------~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~  216 (465)
                      ++..+..++...        |+.++|.+.|+++....+.+...+..+......    ..      ..        .....
T Consensus       109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~----~~------~~--------~~~~~  170 (235)
T TIGR03302       109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYL----RN------RL--------AGKEL  170 (235)
T ss_pred             HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHH----HH------HH--------HHHHH
Confidence            344455555544        678889999888874334444343332221110    00      00        01122


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 048269          217 KMIETFFKINKDDEAMKVFQMMRVKRM-DDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKR  277 (465)
Q Consensus       217 ~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  277 (465)
                      .+...+.+.|++++|...++....... .|.....+..+..++.+.|++++|..+++.+...
T Consensus       171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~  232 (235)
T TIGR03302       171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN  232 (235)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            556678888999999999988876622 1223567888889999999999999988887765

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.75  E-value=7.2e-06  Score=75.54  Aligned_cols=244  Identities=11%  Similarity=0.008  Sum_probs=187.8

Q ss_pred             ChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 048269           52 SWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFF  131 (465)
Q Consensus        52 ~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  131 (465)
                      +...|.-.|+.+++++|+   +...|-.|-......++=..|+..+++..+.++.+..+...|...|...|.-..|+..+
T Consensus       300 ~L~~A~LafEAAVkqdP~---haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L  376 (579)
T KOG1125|consen  300 DLSEAALAFEAAVKQDPQ---HAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKML  376 (579)
T ss_pred             CchHHHHHHHHHHhhChH---HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHH
Confidence            466788888888788887   99999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhCCCC--------CCHHHHHHHHHHHHcCCCHHHHHHHHHHhh--cCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 048269          132 HIMNDCGCE--------YSLEMLNKVVKTLCQRKLVVEAKYLILKLS--EWIKPNEIAYGWLIKGYCDVGDLIEASKIWN  201 (465)
Q Consensus       132 ~~~~~~~~~--------~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~--~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~  201 (465)
                      +.......+        ++...-+.  ..+.....+....++|-++.  .+..+|+.....|.-.|--.|++++|.+.|+
T Consensus       377 ~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~  454 (579)
T KOG1125|consen  377 DKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFE  454 (579)
T ss_pred             HHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHH
Confidence            888664311        00000000  11122233455667777776  4445888899999999999999999999999


Q ss_pred             HHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHH---C-
Q 048269          202 LMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFK---R-  277 (465)
Q Consensus       202 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~-  277 (465)
                      ...... +-|...||-|...++...+.++|+..|++.++.  .|.-+.+...|.-+|...|.+++|.+.|-....   . 
T Consensus       455 ~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks  531 (579)
T KOG1125|consen  455 AALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKS  531 (579)
T ss_pred             HHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcc
Confidence            998863 336789999999999999999999999999866  674577778888899999999999988866542   2 


Q ss_pred             -----CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048269          278 -----GIEADNLTLSSIIYGLLARGRLREAY  303 (465)
Q Consensus       278 -----~~~~~~~~~~~li~~~~~~~~~~~a~  303 (465)
                           +..++...|..|=.++.-.++.+.+.
T Consensus       532 ~~~~~~~~~se~iw~tLR~als~~~~~D~l~  562 (579)
T KOG1125|consen  532 RNHNKAPMASENIWQTLRLALSAMNRSDLLQ  562 (579)
T ss_pred             cccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence                 11223455666555555555555443

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.73  E-value=7.8e-05  Score=69.09  Aligned_cols=340  Identities=11%  Similarity=0.052  Sum_probs=193.8

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHc
Q 048269           76 TFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQ  155 (465)
Q Consensus        76 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~  155 (465)
                      ..-+=++.+.+.|++++|++...++...++.+..++..-+.++++.+++++|+.+.+.-...  ..+...+-.=..+..+
T Consensus        14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yr   91 (652)
T KOG2376|consen   14 ALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYR   91 (652)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHH
Confidence            34445678888999999999999999888777889999999999999999999554332210  1111111112334557


Q ss_pred             CCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 048269          156 RKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVF  235 (465)
Q Consensus       156 ~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~  235 (465)
                      .+..++|+..++-..   +.+..+...-...+.+.|++++|.++|+.+.+++.. +   +...+.+-+..  ...+... 
T Consensus        92 lnk~Dealk~~~~~~---~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d-d---~d~~~r~nl~a--~~a~l~~-  161 (652)
T KOG2376|consen   92 LNKLDEALKTLKGLD---RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD-D---QDEERRANLLA--VAAALQV-  161 (652)
T ss_pred             cccHHHHHHHHhccc---ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc-h---HHHHHHHHHHH--HHHhhhH-
Confidence            899999999998433   334446666667788999999999999999887543 2   22222221110  0111111 


Q ss_pred             HHHHHcCCCCCCcchHHHHH---HHHHhcCChHHHHHHHHHHHHCC-------CCCCHH------H-HHHHHHHHHhcCC
Q 048269          236 QMMRVKRMDDLGLSTYRIVI---DWMCKRGKISQAYTMLEEMFKRG-------IEADNL------T-LSSIIYGLLARGR  298 (465)
Q Consensus       236 ~~m~~~~~~~~~~~~~~~li---~~~~~~~~~~~a~~~~~~m~~~~-------~~~~~~------~-~~~li~~~~~~~~  298 (465)
                      +.+......|  ..+|..+.   -.+...|++.+|+++++...+.+       -.-+..      + -.-+...+...|+
T Consensus       162 ~~~q~v~~v~--e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gq  239 (652)
T KOG2376|consen  162 QLLQSVPEVP--EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQ  239 (652)
T ss_pred             HHHHhccCCC--cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcc
Confidence            1222222233  23454443   34567899999999999883211       111111      1 1234445678899


Q ss_pred             HHHHHHHHHHhcC---CCHhhHHHHHH---HHHhcCC-HH-HHHHHHHHHHHcC-------C---CCCHHHHH-HHHHHh
Q 048269          299 LREAYKVVEEIEK---PDISLYHGLIK---GLLRLRR-AR-EATQVFREMIKRG-------C---EPTMHTYI-MLLQGH  359 (465)
Q Consensus       299 ~~~a~~~~~~~~~---~~~~~~~~li~---~~~~~~~-~~-~a~~~~~~m~~~~-------~---~p~~~~~~-~ll~~~  359 (465)
                      -++|..++..+..   +|...-.+...   +.....+ ++ .++..++......       +   .-.....| .++..+
T Consensus       240 t~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~  319 (652)
T KOG2376|consen  240 TAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF  319 (652)
T ss_pred             hHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999998877   44433322222   2222221 22 1222222221100       0   01111112 233333


Q ss_pred             hcccC-----CCCCCCc--hHHHHHHHHHHH--hcCCHHHHHHHHHHHHhCCCCCCH--hhHHHHHHHHhhccchHHHHH
Q 048269          360 LGKRG-----RKGPDPL--VNFDTIFVGGLV--KAGKSLDAAKYVERVMNRGVEVPR--FDYNKFLHYYSNEEGVVMFEE  428 (465)
Q Consensus       360 ~~~~~-----~~~~~~~--~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~g~~~~a~~  428 (465)
                      .+...     ....++.  ...+.+++....  +...+..|.+++....+.  .|..  .+.-..+......|+++.|.+
T Consensus       320 tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~  397 (652)
T KOG2376|consen  320 TNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALE  397 (652)
T ss_pred             hhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHH
Confidence            33322     1222222  334455554433  223577888888887763  3433  355555666778999999999


Q ss_pred             HHH
Q 048269          429 VGK  431 (465)
Q Consensus       429 ~~~  431 (465)
                      ++.
T Consensus       398 il~  400 (652)
T KOG2376|consen  398 ILS  400 (652)
T ss_pred             HHH
Confidence            999

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.71  E-value=5.8e-06  Score=68.78  Aligned_cols=162  Identities=12%  Similarity=-0.057  Sum_probs=113.4

Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 048269           73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKT  152 (465)
Q Consensus        73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~  152 (465)
                      |... ..+-..+...|+-+....+..........+....+..+....+.|++..|+..|.+..... ++|..+|+.+.-+
T Consensus        66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaa  143 (257)
T COG5010          66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAA  143 (257)
T ss_pred             hHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHH
Confidence            4444 5566666677777777776666555544555666667777777788888887777777654 6777777777777


Q ss_pred             HHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 048269          153 LCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAM  232 (465)
Q Consensus       153 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~  232 (465)
                      |.+.|++++|..-|.+..+-.+-+....+.|...+.-.|+.+.|..++......+ .-|..+-..+.......|++++|.
T Consensus       144 ldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~  222 (257)
T COG5010         144 LDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAE  222 (257)
T ss_pred             HHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHH
Confidence            7777888877777777664445556667777777777777777777777777654 225666667777777777777777


Q ss_pred             HHHHH
Q 048269          233 KVFQM  237 (465)
Q Consensus       233 ~~~~~  237 (465)
                      ++...
T Consensus       223 ~i~~~  227 (257)
T COG5010         223 DIAVQ  227 (257)
T ss_pred             hhccc
Confidence            76654

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.69  E-value=1e-05  Score=68.43  Aligned_cols=315  Identities=12%  Similarity=0.036  Sum_probs=207.4

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHH-HHHHH
Q 048269          108 DKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYG-WLIKG  186 (465)
Q Consensus       108 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~li~~  186 (465)
                      ..-|.+.+..+.+..+++.|++++..-.++. +.+......+..+|....++..|-..|+++... .|...-|. --...
T Consensus        10 EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql-~P~~~qYrlY~AQS   87 (459)
T KOG4340|consen   10 EGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL-HPELEQYRLYQAQS   87 (459)
T ss_pred             CCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ChHHHHHHHHHHHH
Confidence            3347788888899999999999998887764 447778888999999999999999999999743 33333332 23455


Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCCh
Q 048269          187 YCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIET--FFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKI  264 (465)
Q Consensus       187 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~  264 (465)
                      +.+.+.+..|+++...|...   ++...-..-+.+  ....+++..+..++++....+    +..+.+...-...+.|++
T Consensus        88 LY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en----~Ad~~in~gCllykegqy  160 (459)
T KOG4340|consen   88 LYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN----EADGQINLGCLLYKEGQY  160 (459)
T ss_pred             HHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC----ccchhccchheeeccccH
Confidence            66778899999999888753   332222222222  234677888888887765322    334444444455689999


Q ss_pred             HHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC-----------------CCHh--------hHH
Q 048269          265 SQAYTMLEEMFKR-GIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK-----------------PDIS--------LYH  318 (465)
Q Consensus       265 ~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----------------~~~~--------~~~  318 (465)
                      +.|.+-|+...+- |.. ....|+..+ +..+.|+++.|.+...++.+                 +|+.        +-+
T Consensus       161 EaAvqkFqaAlqvsGyq-pllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~S  238 (459)
T KOG4340|consen  161 EAAVQKFQAALQVSGYQ-PLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQS  238 (459)
T ss_pred             HHHHHHHHHHHhhcCCC-chhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHH
Confidence            9999999988775 454 455666554 45577899999998887754                 2321        123


Q ss_pred             HHHH-------HHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHhhcccC---------CCC-CCCchHHHHHHHH
Q 048269          319 GLIK-------GLLRLRRAREATQVFREMIKR-GCEPTMHTYIMLLQGHLGKRG---------RKG-PDPLVNFDTIFVG  380 (465)
Q Consensus       319 ~li~-------~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~~~---------~~~-~~~~~~~~~~li~  380 (465)
                      .++.       .+.+.|+++.|.+.+..|.-+ .-..|+.|.+.+.-.-.....         -.+ -+-...||..++-
T Consensus       239 al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLl  318 (459)
T KOG4340|consen  239 ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQNPFPPETFANLLL  318 (459)
T ss_pred             HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHHHHhcCCCChHHHHHHHH
Confidence            3333       356789999999999888532 234567777655433222211         112 2234578999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCC-CCHhhHHHHHHHHhh-ccchHHHHHHHHHHH
Q 048269          381 GLVKAGKSLDAAKYVERVMNRGVE-VPRFDYNKFLHYYSN-EEGVVMFEEVGKKLR  434 (465)
Q Consensus       381 ~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~  434 (465)
                      .||+..-++.|..++.+-...-.+ .+...|+ |+.++.- .-..+++.+-++.+.
T Consensus       319 lyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La  373 (459)
T KOG4340|consen  319 LYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLA  373 (459)
T ss_pred             HHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHH
Confidence            999999999999988765432221 2444444 3444443 456677766666554

>PLN02789 farnesyltranstransferase

Probab=98.69  E-value=2.5e-05  Score=69.91  Aligned_cols=203  Identities=10%  Similarity=-0.055  Sum_probs=157.1

Q ss_pred             ChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcC-ChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCH--HHHH
Q 048269           52 SWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSR-NIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVREL--KKMV  128 (465)
Q Consensus        52 ~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a~  128 (465)
                      ..+.|+...+.++...+.   +..+|+..-.++...| +++++++.++++.+.++.+..+|+.....+.+.|+.  ++++
T Consensus        52 ~serAL~lt~~aI~lnP~---~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el  128 (320)
T PLN02789         52 RSPRALDLTADVIRLNPG---NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKEL  128 (320)
T ss_pred             CCHHHHHHHHHHHHHCch---hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHH
Confidence            668999999999777776   7778887777777877 689999999999999888877888776666666663  6789


Q ss_pred             HHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhc---CCH----HHHHHHHH
Q 048269          129 NFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDV---GDL----IEASKIWN  201 (465)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~---g~~----~~a~~~~~  201 (465)
                      .+++.+.+.. +-|..+|+....++...|+++++++.++++....+.|..+|+.....+.+.   |..    ++.+....
T Consensus       129 ~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~  207 (320)
T PLN02789        129 EFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTI  207 (320)
T ss_pred             HHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHH
Confidence            9998988876 668899999999999999999999999999855577788888777666554   222    46677776


Q ss_pred             HHHHCCCCCcHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhc
Q 048269          202 LMTDEGFEPSIDVVDKMIETFFKI----NKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKR  261 (465)
Q Consensus       202 ~m~~~g~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~  261 (465)
                      .+.... +-|...|+-+...+...    ++..+|.+++.+....  .|.+......|+..|+..
T Consensus       208 ~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~--~~~s~~al~~l~d~~~~~  268 (320)
T PLN02789        208 DAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK--DSNHVFALSDLLDLLCEG  268 (320)
T ss_pred             HHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcc--cCCcHHHHHHHHHHHHhh
Confidence            766653 34677788877777763    3456688888887664  444777888889888863

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.68  E-value=2.7e-05  Score=74.73  Aligned_cols=316  Identities=11%  Similarity=0.056  Sum_probs=178.3

Q ss_pred             ChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCC--------C-CChHHHHHHHHHHHhcC
Q 048269           52 SWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRR--------L-VNDKTFKIALMTLAEVR  122 (465)
Q Consensus        52 ~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--------~-~~~~~~~~l~~~~~~~~  122 (465)
                      +.+.|++-...+        .+..+|..+.+.|.+..+++-|.-.+-.|....        . .+..+-..+.......|
T Consensus       743 ~MD~AfksI~~I--------kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLg  814 (1416)
T KOG3617|consen  743 SMDAAFKSIQFI--------KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELG  814 (1416)
T ss_pred             cHHHHHHHHHHH--------hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHh
Confidence            556666655554        267889999999999999999988887775321        1 11122333344456778


Q ss_pred             CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 048269          123 ELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNL  202 (465)
Q Consensus       123 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  202 (465)
                      .+++|+.+|.+-+..         ..|=..|-..|.+++|.++-+.-- .+ .=..||..-...+-..+|.+.|++.|++
T Consensus       815 MlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~D-Ri-HLr~Tyy~yA~~Lear~Di~~AleyyEK  883 (1416)
T KOG3617|consen  815 MLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKD-RI-HLRNTYYNYAKYLEARRDIEAALEYYEK  883 (1416)
T ss_pred             hHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhcc-ce-ehhhhHHHHHHHHHhhccHHHHHHHHHh
Confidence            889999998887763         334455666777777777655432 11 1123444445555555666666666554


Q ss_pred             HHHCCC-------------------CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----------C----------C
Q 048269          203 MTDEGF-------------------EPSIDVVDKMIETFFKINKDDEAMKVFQMMRVK----------R----------M  243 (465)
Q Consensus       203 m~~~g~-------------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----------~----------~  243 (465)
                      .....+                   ..|...|......+-..|+.+.|+.+|....+.          |          -
T Consensus       884 ~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~e  963 (1416)
T KOG3617|consen  884 AGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEE  963 (1416)
T ss_pred             cCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHh
Confidence            321100                   113333333444444456666666666554332          0          0


Q ss_pred             CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHH----------CCCCCCHHHHH-------------------------H
Q 048269          244 DDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFK----------RGIEADNLTLS-------------------------S  288 (465)
Q Consensus       244 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----------~~~~~~~~~~~-------------------------~  288 (465)
                      .- |......+.+.|-..|++.+|..+|.+...          ++.  +...+|                         .
T Consensus       964 sg-d~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~--~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~ 1040 (1416)
T KOG3617|consen  964 SG-DKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDM--KDRLANLALMSGGSDLVSAARYYEELGGYAHK 1040 (1416)
T ss_pred             cc-cHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCH--HHHHHHHHhhcCchhHHHHHHHHHHcchhhhH
Confidence            11 455666778888888888888888776542          221  111111                         1


Q ss_pred             HHHHHHhcCCHHHHHHHHHHhcC--------------CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 048269          289 IIYGLLARGRLREAYKVVEEIEK--------------PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIM  354 (465)
Q Consensus       289 li~~~~~~~~~~~a~~~~~~~~~--------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~  354 (465)
                      .+..|-++|.+.+|+++--+-.+              .|+...+.-...++...++++|..++-..++         |..
T Consensus      1041 AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~ 1111 (1416)
T KOG3617|consen 1041 AVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE---------FSG 1111 (1416)
T ss_pred             HHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHH
Confidence            12224444555555443222111              4556666666677778888888887765542         333


Q ss_pred             HHHHhhcccC------------CCCCCCc----hHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048269          355 LLQGHLGKRG------------RKGPDPL----VNFDTIFVGGLVKAGKSLDAAKYVERV  398 (465)
Q Consensus       355 ll~~~~~~~~------------~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m  398 (465)
                      .++.|.+++-            .+.-.|+    ......+...|.+.|.+..|-+-|.+.
T Consensus      1112 AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1112 ALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred             HHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence            4444433322            1212222    235667778888999998887776654

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.65  E-value=5.2e-06  Score=71.96  Aligned_cols=183  Identities=11%  Similarity=0.035  Sum_probs=124.8

Q ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH---HHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHH---hH
Q 048269          107 NDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSL---EMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEI---AY  180 (465)
Q Consensus       107 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~  180 (465)
                      ....+..+...+...|++++|...|+.+.... +.+.   ..+..+..++...|++++|...++++....+.+..   ++
T Consensus        32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~  110 (235)
T TIGR03302        32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY  110 (235)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence            55677888888899999999999999887753 2222   45677888888999999999999998732232222   44


Q ss_pred             HHHHHHHHhc--------CCHHHHHHHHHHHHHCCCCCcH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchH
Q 048269          181 GWLIKGYCDV--------GDLIEASKIWNLMTDEGFEPSI-DVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTY  251 (465)
Q Consensus       181 ~~li~~~~~~--------g~~~~a~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~  251 (465)
                      ..+..++...        |+++.|.+.|+.+.+.  .|+. ..+..+.....    ..      ...         ....
T Consensus       111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~------~~~---------~~~~  169 (235)
T TIGR03302       111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LR------NRL---------AGKE  169 (235)
T ss_pred             HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HH------HHH---------HHHH
Confidence            4455555543        6778888888888765  2332 22221111100    00      000         0112


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC
Q 048269          252 RIVIDWMCKRGKISQAYTMLEEMFKRGI--EADNLTLSSIIYGLLARGRLREAYKVVEEIEK  311 (465)
Q Consensus       252 ~~li~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~  311 (465)
                      ..+...+.+.|++++|...++...+...  +.....+..+..++.+.|+.++|...++.+..
T Consensus       170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~  231 (235)
T TIGR03302       170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA  231 (235)
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            2566779999999999999999987632  22457888999999999999999999988754

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.64  E-value=0.00014  Score=76.43  Aligned_cols=302  Identities=8%  Similarity=-0.053  Sum_probs=183.9

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHhhCCC-------CC--hHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH----H
Q 048269           78 NRMVDIIGKSRNIDLFWETLQEMGRRRL-------VN--DKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSL----E  144 (465)
Q Consensus        78 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~-------~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~  144 (465)
                      ......+...|+++++...+......-.       +.  ......+...+...|++++|...++...+.-...+.    .
T Consensus       413 ~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  492 (903)
T PRK04841        413 LLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIV  492 (903)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHH
Confidence            3445555677888888888876643210       11  112223344556788999999988887653111121    2


Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHhh---cCC-CC--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCC--C-c
Q 048269          145 MLNKVVKTLCQRKLVVEAKYLILKLS---EWI-KP--NEIAYGWLIKGYCDVGDLIEASKIWNLMTD----EGFE--P-S  211 (465)
Q Consensus       145 ~~~~ll~~~~~~~~~~~a~~~~~~m~---~~~-~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~--~-~  211 (465)
                      ..+.+...+...|++++|...+++..   ... .+  ...++..+...+...|+++.|...+++...    .|..  + .
T Consensus       493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~  572 (903)
T PRK04841        493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMH  572 (903)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence            34556666777899999988888865   111 11  123455566677888999999888877654    2221  1 2


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCC-CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCCHH--
Q 048269          212 IDVVDKMIETFFKINKDDEAMKVFQMMRVKR--MDD-LGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRG--IEADNL--  284 (465)
Q Consensus       212 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~--  284 (465)
                      ...+..+...+...|++++|...+++.....  ..+ .....+..+...+...|+.+.|.+.++......  ......  
T Consensus       573 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~  652 (903)
T PRK04841        573 EFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWI  652 (903)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHh
Confidence            2334555666777899999988888765421  111 022344445667778899999988888775421  111110  


Q ss_pred             HH--HHHHHHHHhcCCHHHHHHHHHHhcCCC---H----hhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCHHH
Q 048269          285 TL--SSIIYGLLARGRLREAYKVVEEIEKPD---I----SLYHGLIKGLLRLRRAREATQVFREMIKR----GCEPTMHT  351 (465)
Q Consensus       285 ~~--~~li~~~~~~~~~~~a~~~~~~~~~~~---~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~~~~  351 (465)
                      ..  ...+..+...|+.+.|...+.....+.   .    ..+..+..++...|++++|...+++....    |..++ . 
T Consensus       653 ~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~-~-  730 (903)
T PRK04841        653 ANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSD-L-  730 (903)
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHH-H-
Confidence            10  112244456788888888887765521   1    11334566677889999999988887653    21111 1 


Q ss_pred             HHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048269          352 YIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNR  401 (465)
Q Consensus       352 ~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  401 (465)
                                          ..+...+..++.+.|+.++|.+.+.+..+.
T Consensus       731 --------------------a~~~~~la~a~~~~G~~~~A~~~L~~Al~l  760 (903)
T PRK04841        731 --------------------NRNLILLNQLYWQQGRKSEAQRVLLEALKL  760 (903)
T ss_pred             --------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence                                112233456678999999999999999874

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.63  E-value=1.8e-05  Score=65.99  Aligned_cols=161  Identities=14%  Similarity=0.035  Sum_probs=118.8

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcC
Q 048269          147 NKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKIN  226 (465)
Q Consensus       147 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g  226 (465)
                      ..+-..+...|+-+....+..+.....+.|....+.+++...+.|++..|...|++..... ++|...|+.+.-+|.+.|
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~G  148 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLG  148 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHcc
Confidence            4455566667777777777777664456666666677888888888888888888877643 567788888888888888


Q ss_pred             CHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048269          227 KDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVV  306 (465)
Q Consensus       227 ~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~  306 (465)
                      +++.|..-|.+..+.  .|.++..++.+.-.+.-.|+++.|..++......+.. |...-..+.......|++++|..+.
T Consensus       149 r~~~Ar~ay~qAl~L--~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~  225 (257)
T COG5010         149 RFDEARRAYRQALEL--APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIA  225 (257)
T ss_pred             ChhHHHHHHHHHHHh--ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhc
Confidence            888888888877755  4446777888888888888888888888877766433 6666777777778888888888776


Q ss_pred             HHhcC
Q 048269          307 EEIEK  311 (465)
Q Consensus       307 ~~~~~  311 (465)
                      ..-..
T Consensus       226 ~~e~~  230 (257)
T COG5010         226 VQELL  230 (257)
T ss_pred             ccccc
Confidence            65444

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.63  E-value=0.00031  Score=69.27  Aligned_cols=330  Identities=11%  Similarity=0.054  Sum_probs=193.0

Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCC---ChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC--CCCCHHHHH
Q 048269           73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLV---NDKTFKIALMTLAEVRELKKMVNFFHIMNDCG--CEYSLEMLN  147 (465)
Q Consensus        73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~  147 (465)
                      |...|+.++.-   .  -.--.++.++..+.+++   ++...+..+.++...+-..+-+++++.+.-..  +.-+...-|
T Consensus       951 D~~LW~~VL~e---~--n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQn 1025 (1666)
T KOG0985|consen  951 DPDLWAKVLNE---E--NPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQN 1025 (1666)
T ss_pred             ChHHHHHHHhc---c--ChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhh
Confidence            88899888731   1  11223566777776653   67788889999999999999999999987532  222333445


Q ss_pred             HHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------------------
Q 048269          148 KVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEG--------------------  207 (465)
Q Consensus       148 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--------------------  207 (465)
                      .|+-...+ -+...+.++.+++..-..|+.      ...+...+-+++|..+|+..-..+                    
T Consensus      1026 LLiLtAik-ad~trVm~YI~rLdnyDa~~i------a~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efA 1098 (1666)
T KOG0985|consen 1026 LLILTAIK-ADRTRVMEYINRLDNYDAPDI------AEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFA 1098 (1666)
T ss_pred             hHHHHHhh-cChHHHHHHHHHhccCCchhH------HHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHH
Confidence            55544444 355677778887762223332      233444455566666665542110                    


Q ss_pred             -CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 048269          208 -FEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTL  286 (465)
Q Consensus       208 -~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~  286 (465)
                       ---.+.+|..+..+-.+.|...+|++-|-+.       .|+..|..+++...+.|.+++..+++....+....|.  .-
T Consensus      1099 e~~n~p~vWsqlakAQL~~~~v~dAieSyika-------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~--id 1169 (1666)
T KOG0985|consen 1099 ERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA-------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY--ID 1169 (1666)
T ss_pred             HhhCChHHHHHHHHHHHhcCchHHHHHHHHhc-------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc--ch
Confidence             0113456777777777777777777666432       1667788888888888888888887776666655443  34


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHhcCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccCCC
Q 048269          287 SSIIYGLLARGRLREAYKVVEEIEKPDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRK  366 (465)
Q Consensus       287 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~  366 (465)
                      +.|+-+|++.+++.+..+++   ..||......+..-|...|.++.|.-+|...-...  --..|.. -+.-|-+..+..
T Consensus      1170 ~eLi~AyAkt~rl~elE~fi---~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a--~La~TLV-~LgeyQ~AVD~a 1243 (1666)
T KOG0985|consen 1170 SELIFAYAKTNRLTELEEFI---AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFA--KLASTLV-YLGEYQGAVDAA 1243 (1666)
T ss_pred             HHHHHHHHHhchHHHHHHHh---cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHH--HHHHHHH-HHHHHHHHHHHh
Confidence            56777888888777655443   23777777777777777788777776666542110  0001100 001110111111


Q ss_pred             CCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhccchHHHHHHHHHHH
Q 048269          367 GPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNEEGVVMFEEVGKKLR  434 (465)
Q Consensus       367 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~  434 (465)
                      .-..+..+|.....+|...+.+.-|     +|-...+.....-..-++..|...|-+++...+++.-.
T Consensus      1244 RKAns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1244 RKANSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL 1306 (1666)
T ss_pred             hhccchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh
Confidence            2223345555555555544443322     23222233344456677777877888888777776554

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.60  E-value=3.8e-06  Score=66.13  Aligned_cols=106  Identities=8%  Similarity=-0.180  Sum_probs=80.3

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHc
Q 048269           76 TFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQ  155 (465)
Q Consensus        76 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~  155 (465)
                      .+..+...+...|++++|...|+.....++.+..++..+...+.+.|++++|+..|+...+.. +.+...+..+..++..
T Consensus        26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~  104 (144)
T PRK15359         26 TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM  104 (144)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence            355567777888888888888888888877777888888888888888888888888888765 5677777778888888


Q ss_pred             CCCHHHHHHHHHHhhcCCCCCHHhHHH
Q 048269          156 RKLVVEAKYLILKLSEWIKPNEIAYGW  182 (465)
Q Consensus       156 ~~~~~~a~~~~~~m~~~~~~~~~~~~~  182 (465)
                      .|+.++|+..|+....-.+.+...+..
T Consensus       105 ~g~~~eAi~~~~~Al~~~p~~~~~~~~  131 (144)
T PRK15359        105 MGEPGLAREAFQTAIKMSYADASWSEI  131 (144)
T ss_pred             cCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence            888888888888876433444444433

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.59  E-value=0.00033  Score=60.70  Aligned_cols=285  Identities=12%  Similarity=0.052  Sum_probs=200.5

Q ss_pred             ChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 048269           52 SWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFF  131 (465)
Q Consensus        52 ~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  131 (465)
                      +...|+--|..++..++.   +-.++..-...|...|+-..|+.=+....+..+.-..+--.-...+.+.|.++.|..-|
T Consensus        53 Q~sDALt~yHaAve~dp~---~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF  129 (504)
T KOG0624|consen   53 QLSDALTHYHAAVEGDPN---NYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADF  129 (504)
T ss_pred             hHHHHHHHHHHHHcCCch---hHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHH
Confidence            445677777776343332   44444555668888888888888888887664421122223345678899999999999


Q ss_pred             HHhhhCCCCC--CHHH------------HHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHH
Q 048269          132 HIMNDCGCEY--SLEM------------LNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEAS  197 (465)
Q Consensus       132 ~~~~~~~~~~--~~~~------------~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~  197 (465)
                      +.........  ....            ....+..+...|+...|+.....+.+-.+.|...|..-..+|...|++..|+
T Consensus       130 ~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI  209 (504)
T KOG0624|consen  130 DQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAI  209 (504)
T ss_pred             HHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHH
Confidence            9988754211  1111            1233445667899999999999988666888999999999999999999998


Q ss_pred             HHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcc-h---HHHH---------HHHHHhcCCh
Q 048269          198 KIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLS-T---YRIV---------IDWMCKRGKI  264 (465)
Q Consensus       198 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-~---~~~l---------i~~~~~~~~~  264 (465)
                      .=++...+.. .-+..++..+-..+...|+.+.++...++..+.  .| +.. +   |..+         +......++|
T Consensus       210 ~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dp-dHK~Cf~~YKklkKv~K~les~e~~ie~~~~  285 (504)
T KOG0624|consen  210 HDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DP-DHKLCFPFYKKLKKVVKSLESAEQAIEEKHW  285 (504)
T ss_pred             HHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--Cc-chhhHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence            8777766543 235566677788888999999999999988765  44 332 1   2111         1223456777


Q ss_pred             HHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHhcC---CCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 048269          265 SQAYTMLEEMFKRGIEADNL---TLSSIIYGLLARGRLREAYKVVEEIEK---PDISLYHGLIKGLLRLRRAREATQVFR  338 (465)
Q Consensus       265 ~~a~~~~~~m~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~  338 (465)
                      .++..-.+...+........   .+..+..++...+++.+|++...++.+   .|+.++.--..+|.-..+++.|+.=|+
T Consensus       286 t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye  365 (504)
T KOG0624|consen  286 TECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYE  365 (504)
T ss_pred             HHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            78888887777764332233   344566778888999999999998887   347777777888999999999999999


Q ss_pred             HHHHc
Q 048269          339 EMIKR  343 (465)
Q Consensus       339 ~m~~~  343 (465)
                      ...+.
T Consensus       366 ~A~e~  370 (504)
T KOG0624|consen  366 KALEL  370 (504)
T ss_pred             HHHhc
Confidence            98854

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.57  E-value=0.00011  Score=73.64  Aligned_cols=237  Identities=9%  Similarity=0.075  Sum_probs=144.0

Q ss_pred             CHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH
Q 048269          142 SLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIET  221 (465)
Q Consensus       142 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~  221 (465)
                      +...+..|+..+...+++++|.++.+......+-....|-.+...+.+.++...+.-+                 .++..
T Consensus        30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l~~   92 (906)
T PRK14720         30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-----------------NLIDS   92 (906)
T ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-----------------hhhhh
Confidence            4455666777777777777777777755432233333333333345555553333222                 33334


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 048269          222 FFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLRE  301 (465)
Q Consensus       222 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~  301 (465)
                      .....++..+.-+...|...+   .+..++..+..+|-+.|+.+++..+|+++.+.. +-|+...|.+...|+.. ++++
T Consensus        93 ~~~~~~~~~ve~~~~~i~~~~---~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~K  167 (906)
T PRK14720         93 FSQNLKWAIVEHICDKILLYG---ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEK  167 (906)
T ss_pred             cccccchhHHHHHHHHHHhhh---hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHH
Confidence            444445544444444444432   144567777777777777777777777777765 33667777777777777 7777


Q ss_pred             HHHHHHHhcCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHhhcccCCCCCCCchHHHHHHHH
Q 048269          302 AYKVVEEIEKPDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMH-TYIMLLQGHLGKRGRKGPDPLVNFDTIFVG  380 (465)
Q Consensus       302 a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~~~~~~~~~~~li~  380 (465)
                      |..++.+.           +..|...+++..+.++|.++...  .|+.. .+..+++...+.   .+..--..++-.+..
T Consensus       168 A~~m~~KA-----------V~~~i~~kq~~~~~e~W~k~~~~--~~~d~d~f~~i~~ki~~~---~~~~~~~~~~~~l~~  231 (906)
T PRK14720        168 AITYLKKA-----------IYRFIKKKQYVGIEEIWSKLVHY--NSDDFDFFLRIERKVLGH---REFTRLVGLLEDLYE  231 (906)
T ss_pred             HHHHHHHH-----------HHHHHhhhcchHHHHHHHHHHhc--CcccchHHHHHHHHHHhh---hccchhHHHHHHHHH
Confidence            77766543           34466666777778888877754  34332 223333333222   123444556667778


Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHh
Q 048269          381 GLVKAGKSLDAAKYVERVMNRGVEV-PRFDYNKFLHYYS  418 (465)
Q Consensus       381 ~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~  418 (465)
                      .|-..++|+++..+++.+.+.  .| |.....-++.+|.
T Consensus       232 ~y~~~~~~~~~i~iLK~iL~~--~~~n~~a~~~l~~~y~  268 (906)
T PRK14720        232 PYKALEDWDEVIYILKKILEH--DNKNNKAREELIRFYK  268 (906)
T ss_pred             HHhhhhhhhHHHHHHHHHHhc--CCcchhhHHHHHHHHH
Confidence            889999999999999999974  44 5557777777776

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.57  E-value=8.5e-06  Score=77.11  Aligned_cols=237  Identities=13%  Similarity=0.083  Sum_probs=168.0

Q ss_pred             CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHH
Q 048269          139 CEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKM  218 (465)
Q Consensus       139 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l  218 (465)
                      .+|-...-..+...+...|-...|..+|+++.        .|..+|.+|+..|+..+|..+..+..++  +||...|..+
T Consensus       394 lpp~Wq~q~~laell~slGitksAl~I~Erle--------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~L  463 (777)
T KOG1128|consen  394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE--------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLL  463 (777)
T ss_pred             CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH--------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHh
Confidence            34444555667778888899999999998875        5777888899999999999888888774  6888888888


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048269          219 IETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGR  298 (465)
Q Consensus       219 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~  298 (465)
                      .+......-+++|.++.+.....        +-..+.....+.++++++.+.|+.-.+.+ +.-..+|-.+-.+..+.++
T Consensus       464 GDv~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek  534 (777)
T KOG1128|consen  464 GDVLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEK  534 (777)
T ss_pred             hhhccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhh
Confidence            88877777788888888765432        11122222234788888888888766553 2245667777777788889


Q ss_pred             HHHHHHHHHHhcC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccCCCCCCCchHHH
Q 048269          299 LREAYKVVEEIEK---PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFD  375 (465)
Q Consensus       299 ~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~  375 (465)
                      ++.|.+.|.....   .+...||.+-.+|.+.++-.+|...+++..+.+..+ ..                       .|
T Consensus       535 ~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~-w~-----------------------iW  590 (777)
T KOG1128|consen  535 EQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQH-WQ-----------------------IW  590 (777)
T ss_pred             hHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCC-Ce-----------------------ee
Confidence            9999988888776   445679999999999999999999999988765322 11                       12


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHhhHHHHHHHHh
Q 048269          376 TIFVGGLVKAGKSLDAAKYVERVMNRG-VEVPRFDYNKFLHYYS  418 (465)
Q Consensus       376 ~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~ll~~~~  418 (465)
                      ...+....+.|.+++|++.+.++.+.. ..-|..+...++....
T Consensus       591 ENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~~~~  634 (777)
T KOG1128|consen  591 ENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTVL  634 (777)
T ss_pred             echhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHHHHH
Confidence            223333478899999999888887522 1124444444444443

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.55  E-value=8e-05  Score=70.75  Aligned_cols=293  Identities=16%  Similarity=0.094  Sum_probs=170.6

Q ss_pred             HHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 048269           74 SITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTL  153 (465)
Q Consensus        74 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~  153 (465)
                      ...-.+.++++...|+-++|-++-+    .+-    --.+.|+.|.+.|.+.+|.+.-..-..  +..|......+..++
T Consensus       589 eklk~sy~q~l~dt~qd~ka~elk~----sdg----d~laaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~al  658 (1636)
T KOG3616|consen  589 EKLKRSYLQALMDTGQDEKAAELKE----SDG----DGLAAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAAL  658 (1636)
T ss_pred             HHHHHHHHHHHHhcCchhhhhhhcc----ccC----ccHHHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHH
Confidence            3444566677777777766654321    111    123456677777777666654322111  123444444444444


Q ss_pred             HcCCCHHHHHHHHHHhh-----------------------cCCCCCHHhH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 048269          154 CQRKLVVEAKYLILKLS-----------------------EWIKPNEIAY-GWLIKGYCDVGDLIEASKIWNLMTDEGFE  209 (465)
Q Consensus       154 ~~~~~~~~a~~~~~~m~-----------------------~~~~~~~~~~-~~li~~~~~~g~~~~a~~~~~~m~~~g~~  209 (465)
                      .+..-+++|-.+|+++.                       -.+|..+++. ......+...|+++.|+..|-+..     
T Consensus       659 ik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~-----  733 (1636)
T KOG3616|consen  659 IKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN-----  733 (1636)
T ss_pred             HhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh-----
Confidence            44433444444444332                       0011111111 112223334455555554443322     


Q ss_pred             CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048269          210 PSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSI  289 (465)
Q Consensus       210 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l  289 (465)
                          .....+.+.....+|.+|+.+++.+..+..   -...|..+...|+..|+++.|.++|.+.         ..++-.
T Consensus       734 ----~~~kaieaai~akew~kai~ildniqdqk~---~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~da  797 (1636)
T KOG3616|consen  734 ----CLIKAIEAAIGAKEWKKAISILDNIQDQKT---ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDA  797 (1636)
T ss_pred             ----hHHHHHHHHhhhhhhhhhHhHHHHhhhhcc---ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHH
Confidence                123455667778899999999998887743   3456888889999999999999998653         235567


Q ss_pred             HHHHHhcCCHHHHHHHHHHhcCCCH--hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccCCCC
Q 048269          290 IYGLLARGRLREAYKVVEEIEKPDI--SLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKG  367 (465)
Q Consensus       290 i~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~  367 (465)
                      |.+|.+.|++++|.++-.+...|..  ..|-+-..-+-++|++.+|.++|-.+.    .|+.                  
T Consensus       798 i~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~------------------  855 (1636)
T KOG3616|consen  798 IDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK------------------  855 (1636)
T ss_pred             HHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH------------------
Confidence            8889999999999999998887543  445555555778888888888876552    3442                  


Q ss_pred             CCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhccchHHHHHHHHH
Q 048269          368 PDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNEEGVVMFEEVGKK  432 (465)
Q Consensus       368 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~  432 (465)
                                .|..|-+.|..+..+++.++-...   .-..|-..+..-+...|+.+.|++-+-+
T Consensus       856 ----------aiqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~fle  907 (1636)
T KOG3616|consen  856 ----------AIQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLE  907 (1636)
T ss_pred             ----------HHHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHh
Confidence                      233457777777777776654311   1123455556666666776666655443

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.55  E-value=3.6e-05  Score=76.97  Aligned_cols=217  Identities=11%  Similarity=-0.009  Sum_probs=117.0

Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC--------------
Q 048269           73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCG--------------  138 (465)
Q Consensus        73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------------  138 (465)
                      +...+..|+..+...+++++|.++.+...+..+.....|-.+...+.+.++...+..+  .+...-              
T Consensus        30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~  107 (906)
T PRK14720         30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICD  107 (906)
T ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHH
Confidence            6777888889888999999999999877776665444555555566666665555444  222110              


Q ss_pred             ----CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHH
Q 048269          139 ----CEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDV  214 (465)
Q Consensus       139 ----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~  214 (465)
                          ..-+...+-.+..+|-+.|+.++|..+++++..-.+.|+.+.|.+...|+.. ++++|.+++.+....        
T Consensus       108 ~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~--------  178 (906)
T PRK14720        108 KILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR--------  178 (906)
T ss_pred             HHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH--------
Confidence                0011123333444444445555555555554422244444444444444444 444444444444332        


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHH
Q 048269          215 VDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKR-GIEADNLTLSSIIYGL  293 (465)
Q Consensus       215 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~  293 (465)
                             +...+++..+.+++..+...  .|                .+.+.-.++.+.+... |..--..++-.+-..|
T Consensus       179 -------~i~~kq~~~~~e~W~k~~~~--~~----------------~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y  233 (906)
T PRK14720        179 -------FIKKKQYVGIEEIWSKLVHY--NS----------------DDFDFFLRIERKVLGHREFTRLVGLLEDLYEPY  233 (906)
T ss_pred             -------HHhhhcchHHHHHHHHHHhc--Cc----------------ccchHHHHHHHHHHhhhccchhHHHHHHHHHHH
Confidence                   33334444444444444433  11                1222223333333322 2222334455566777


Q ss_pred             HhcCCHHHHHHHHHHhcC---CCHhhHHHHHHHHH
Q 048269          294 LARGRLREAYKVVEEIEK---PDISLYHGLIKGLL  325 (465)
Q Consensus       294 ~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~  325 (465)
                      ...++++++..+++.+.+   .|.....-++.+|.
T Consensus       234 ~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~  268 (906)
T PRK14720        234 KALEDWDEVIYILKKILEHDNKNNKAREELIRFYK  268 (906)
T ss_pred             hhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence            888888899888888887   55566666777765

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.54  E-value=7.1e-05  Score=67.98  Aligned_cols=203  Identities=15%  Similarity=0.107  Sum_probs=134.6

Q ss_pred             HHHHHHHHHHhh---cCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 048269          159 VVEAKYLILKLS---EWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVF  235 (465)
Q Consensus       159 ~~~a~~~~~~m~---~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~  235 (465)
                      +..+...-+++.   ....|+...+...+.+......-..+-.++.+..+.+  -...-| -....+...|+++.|+..+
T Consensus       253 Ia~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~aa~Y-G~A~~~~~~~~~d~A~~~l  329 (484)
T COG4783         253 IADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKRG--GLAAQY-GRALQTYLAGQYDEALKLL  329 (484)
T ss_pred             HHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCcc--chHHHH-HHHHHHHHhcccchHHHHH
Confidence            445555555555   2234555555555554444433333333333222211  112223 2333455678888888888


Q ss_pred             HHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhcC---
Q 048269          236 QMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEAD-NLTLSSIIYGLLARGRLREAYKVVEEIEK---  311 (465)
Q Consensus       236 ~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~---  311 (465)
                      +.+...  .|.|+..+......+.+.++.++|.+.++.+...  .|+ ....-.+..+|.+.|+..+|..+++....   
T Consensus       330 ~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p  405 (484)
T COG4783         330 QPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDP  405 (484)
T ss_pred             HHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Confidence            888766  5657777777788888888888888888888876  344 55556677888888888888888887766   


Q ss_pred             CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcCCHHHH
Q 048269          312 PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDA  391 (465)
Q Consensus       312 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A  391 (465)
                      .|+..|..|..+|...|+..++..-..++.                                         ...|+++.|
T Consensus       406 ~dp~~w~~LAqay~~~g~~~~a~~A~AE~~-----------------------------------------~~~G~~~~A  444 (484)
T COG4783         406 EDPNGWDLLAQAYAELGNRAEALLARAEGY-----------------------------------------ALAGRLEQA  444 (484)
T ss_pred             CCchHHHHHHHHHHHhCchHHHHHHHHHHH-----------------------------------------HhCCCHHHH
Confidence            677788888888888888888877766653                                         678999999


Q ss_pred             HHHHHHHHhCCCCCCHhhH
Q 048269          392 AKYVERVMNRGVEVPRFDY  410 (465)
Q Consensus       392 ~~~~~~m~~~~~~p~~~~~  410 (465)
                      ...+....+. ++++..+|
T Consensus       445 ~~~l~~A~~~-~~~~~~~~  462 (484)
T COG4783         445 IIFLMRASQQ-VKLGFPDW  462 (484)
T ss_pred             HHHHHHHHHh-ccCCcHHH
Confidence            9999888874 34444443

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.53  E-value=6.5e-06  Score=68.55  Aligned_cols=125  Identities=13%  Similarity=0.090  Sum_probs=89.5

Q ss_pred             cCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH-HcCCC--HHHHH
Q 048269           87 SRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTL-CQRKL--VVEAK  163 (465)
Q Consensus        87 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~--~~~a~  163 (465)
                      .++.+++...++...+.++.+...|..+...+...|++++|+..|+...+.. +.+...+..+..++ ...|+  .++|.
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~  130 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTR  130 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence            5666777777777777777777778888888888888888888888777764 44666666666653 55565  47788


Q ss_pred             HHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHH
Q 048269          164 YLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSID  213 (465)
Q Consensus       164 ~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~  213 (465)
                      +++++.....+.+..++..+...+.+.|++++|+..|+.+.+.. +|+..
T Consensus       131 ~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~~  179 (198)
T PRK10370        131 EMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRVN  179 (198)
T ss_pred             HHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcc
Confidence            88888775556677777777777788888888888888877653 34443

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.53  E-value=6.1e-06  Score=68.72  Aligned_cols=162  Identities=9%  Similarity=0.005  Sum_probs=121.0

Q ss_pred             HHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCH
Q 048269           80 MVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLV  159 (465)
Q Consensus        80 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~  159 (465)
                      -+..|...|+++.+....+.+....           ..+...++.++++..++...+.. +.|...|..+...|...|++
T Consensus        22 ~~~~Y~~~g~~~~v~~~~~~~~~~~-----------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~   89 (198)
T PRK10370         22 CVGSYLLSPKWQAVRAEYQRLADPL-----------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY   89 (198)
T ss_pred             HHHHHHHcchHHHHHHHHHHHhCcc-----------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence            3456788888887654443322111           11223667788888888877765 77889999999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCHHhHHHHHHH-HHhcCC--HHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048269          160 VEAKYLILKLSEWIKPNEIAYGWLIKG-YCDVGD--LIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQ  236 (465)
Q Consensus       160 ~~a~~~~~~m~~~~~~~~~~~~~li~~-~~~~g~--~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~  236 (465)
                      ++|...|++...-.+.+...+..+..+ +...|+  .++|.+++++..+.+ +-+..++..+...+.+.|++++|...|+
T Consensus        90 ~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~  168 (198)
T PRK10370         90 DNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQ  168 (198)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence            999999999885557788888888886 467677  599999999999875 3367888899999999999999999999


Q ss_pred             HHHHcCCCCCCcchHHHHHHH
Q 048269          237 MMRVKRMDDLGLSTYRIVIDW  257 (465)
Q Consensus       237 ~m~~~~~~~~~~~~~~~li~~  257 (465)
                      .+.+.  .|++..-+. +|.+
T Consensus       169 ~aL~l--~~~~~~r~~-~i~~  186 (198)
T PRK10370        169 KVLDL--NSPRVNRTQ-LVES  186 (198)
T ss_pred             HHHhh--CCCCccHHH-HHHH
Confidence            99876  332554444 4454

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.52  E-value=0.0014  Score=64.18  Aligned_cols=213  Identities=10%  Similarity=0.002  Sum_probs=135.3

Q ss_pred             HHhhhhhCCCCCCHHHHHHHHhcCCCChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCC
Q 048269           26 LHSSLSSCNFNLTHEFFLQICNNFPLSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRL  105 (465)
Q Consensus        26 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  105 (465)
                      +...|+++|..+..-.+..+...-.+..+.|+.+++.. ...++  .|..+...+-..|.+.|+.++|..+|+...+..+
T Consensus        32 ~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~-~~~~~--~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P  108 (932)
T KOG2053|consen   32 LGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEAL-YGLKG--TDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYP  108 (932)
T ss_pred             HHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhh-ccCCC--CchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCC
Confidence            67777778877766666665433334667777777774 32222  2888888888888889999999999988877655


Q ss_pred             CChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCC----------HHHHHHHHHHhh--cCC
Q 048269          106 VNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKL----------VVEAKYLILKLS--EWI  173 (465)
Q Consensus       106 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~m~--~~~  173 (465)
                      . ......+..+|+|.+.+.+-.++--++-+. .+-+...+=++++...+.-.          ..-|.+.++.+.  .|-
T Consensus       109 ~-eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk  186 (932)
T KOG2053|consen  109 S-EELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGK  186 (932)
T ss_pred             c-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCc
Confidence            4 666777777888877776554444444332 23445555556665554321          234556666665  221


Q ss_pred             CCCHHhHHHHHHHHHhcCCHHHHHHHH-HHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 048269          174 KPNEIAYGWLIKGYCDVGDLIEASKIW-NLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRM  243 (465)
Q Consensus       174 ~~~~~~~~~li~~~~~~g~~~~a~~~~-~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~  243 (465)
                      -.+..-...-.......|++++|..++ ....+.-...+...-+.-+..+...++|.+..++-.++...+.
T Consensus       187 ~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~  257 (932)
T KOG2053|consen  187 IESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN  257 (932)
T ss_pred             cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC
Confidence            112222222334455678899999988 4444432333444555677788888999999999999888753

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.51  E-value=5.2e-05  Score=75.04  Aligned_cols=148  Identities=11%  Similarity=0.020  Sum_probs=128.1

Q ss_pred             CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHH
Q 048269           69 CFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNK  148 (465)
Q Consensus        69 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  148 (465)
                      .+..++..+-.|..+..+.|.+++|..+++...+..+-+......++..+.+.+++++|+..+++..... +-+....+.
T Consensus        81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~  159 (694)
T PRK15179         81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILL  159 (694)
T ss_pred             hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHH
Confidence            3556899999999999999999999999999999988888899999999999999999999999999875 556777888


Q ss_pred             HHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHH
Q 048269          149 VVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKM  218 (465)
Q Consensus       149 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l  218 (465)
                      +..++.+.|++++|..+|+++....+.+..++..+..++...|+.++|...|+...+.- .+...-|+..
T Consensus       160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~  228 (694)
T PRK15179        160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRR  228 (694)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHH
Confidence            88999999999999999999986445668899999999999999999999999998752 2334444443

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.50  E-value=0.00043  Score=63.68  Aligned_cols=351  Identities=12%  Similarity=0.003  Sum_probs=226.6

Q ss_pred             HHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHHcCCCHH
Q 048269           82 DIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYS-LEMLNKVVKTLCQRKLVV  160 (465)
Q Consensus        82 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~  160 (465)
                      .+....|+++.|+.+|-+....++++...|..-..+|+..|++++|++=-.+-.+.  .|+ ...|.....++.-.|+++
T Consensus        10 naa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~   87 (539)
T KOG0548|consen   10 NAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYE   87 (539)
T ss_pred             HhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHH
Confidence            45677899999999999999988888888999999999999999998876666654  566 456888888899999999


Q ss_pred             HHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHH---HHHHHHHHHHHCC---CCCcHHHHHHHHHHHHhc---------
Q 048269          161 EAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLI---EASKIWNLMTDEG---FEPSIDVVDKMIETFFKI---------  225 (465)
Q Consensus       161 ~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~---~a~~~~~~m~~~g---~~~~~~~~~~li~~~~~~---------  225 (465)
                      +|+.-|.+-....+.|...++-+..++.......   .--.++..+...-   .......|..++...-+.         
T Consensus        88 eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~  167 (539)
T KOG0548|consen   88 EAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLN  167 (539)
T ss_pred             HHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccc
Confidence            9999999988666788888888888872110000   0001111111100   000112233333322111         


Q ss_pred             -CCHHHHHHHHHHH-----HHcC-------CCC----------C-----------CcchHHHHHHHHHhcCChHHHHHHH
Q 048269          226 -NKDDEAMKVFQMM-----RVKR-------MDD----------L-----------GLSTYRIVIDWMCKRGKISQAYTML  271 (465)
Q Consensus       226 -g~~~~A~~~~~~m-----~~~~-------~~~----------~-----------~~~~~~~li~~~~~~~~~~~a~~~~  271 (465)
                       .+...|.-.+...     ...+       ..|          .           -..-...+.++..+..+++.+.+-+
T Consensus       168 d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y  247 (539)
T KOG0548|consen  168 DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHY  247 (539)
T ss_pred             cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHH
Confidence             1122222222111     0001       001          0           0123556788888899999999999


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCC---Hh-------hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048269          272 EEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEKPD---IS-------LYHGLIKGLLRLRRAREATQVFREMI  341 (465)
Q Consensus       272 ~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~-------~~~~li~~~~~~~~~~~a~~~~~~m~  341 (465)
                      ....+..  -+..-++....+|...|.+......-+...+..   ..       .+..+..+|.+.++++.++..|.+..
T Consensus       248 ~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaL  325 (539)
T KOG0548|consen  248 AKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKAL  325 (539)
T ss_pred             HHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHh
Confidence            9888775  356666777788888888888877766655411   11       12223346777889999999999988


Q ss_pred             HcCCCCCHHHHHHHHHHhhcccC-CCCCCCch-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhh
Q 048269          342 KRGCEPTMHTYIMLLQGHLGKRG-RKGPDPLV-NFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSN  419 (465)
Q Consensus       342 ~~~~~p~~~~~~~ll~~~~~~~~-~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~  419 (465)
                      .....|+..+-.....--.+... ..-+.|.. .-...-...+.+.|++..|+..|.+++... +-|...|..-.-+|.+
T Consensus       326 te~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~k  404 (539)
T KOG0548|consen  326 TEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLK  404 (539)
T ss_pred             hhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHH
Confidence            76666665444333322211111 11122222 112223677889999999999999999864 3355689999999999


Q ss_pred             ccchHHHHHHHHHHHHcC
Q 048269          420 EEGVVMFEEVGKKLREVG  437 (465)
Q Consensus       420 ~g~~~~a~~~~~~~~~~g  437 (465)
                      .|.+..|+.-.+..++.+
T Consensus       405 L~~~~~aL~Da~~~ieL~  422 (539)
T KOG0548|consen  405 LGEYPEALKDAKKCIELD  422 (539)
T ss_pred             HhhHHHHHHHHHHHHhcC
Confidence            999999999888888773

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.50  E-value=0.00014  Score=66.20  Aligned_cols=139  Identities=12%  Similarity=0.027  Sum_probs=79.6

Q ss_pred             HHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHHcCCCHHH
Q 048269           83 IIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYS-LEMLNKVVKTLCQRKLVVE  161 (465)
Q Consensus        83 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~  161 (465)
                      .+...|++++|+..+..+...-+.|+..+......+.+.++.++|.+.++.+...  .|+ ....-.+..+|.+.|+..+
T Consensus       315 ~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~e  392 (484)
T COG4783         315 QTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQE  392 (484)
T ss_pred             HHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHH
Confidence            3344556666666666665555555555556666666666666666666666654  233 3444455566666666666


Q ss_pred             HHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048269          162 AKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVK  241 (465)
Q Consensus       162 a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  241 (465)
                      |+.+++......+.|+..|..|..+|...|+..++.....+                  .+...|+++.|...+....+.
T Consensus       393 ai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~~  454 (484)
T COG4783         393 AIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRASQQ  454 (484)
T ss_pred             HHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHHh
Confidence            66666666655556666666666666666665555443322                  334455666666555555443

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.46  E-value=0.00038  Score=68.65  Aligned_cols=149  Identities=11%  Similarity=-0.008  Sum_probs=82.9

Q ss_pred             ChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCC--ChHHHHHHHHHHHhcCCHHHHHH
Q 048269           52 SWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLV--NDKTFKIALMTLAEVRELKKMVN  129 (465)
Q Consensus        52 ~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~  129 (465)
                      +...|...|..+...+.+   +...+..+.+.|++..+++.|..+.-...+..+.  -...|....-.|.+.++...++.
T Consensus       507 Dm~RA~kCf~KAFeLDat---daeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~  583 (1238)
T KOG1127|consen  507 DMKRAKKCFDKAFELDAT---DAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVC  583 (1238)
T ss_pred             HHHHHHHHHHHHhcCCch---hhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHH
Confidence            445666667666555554   6666667777777777777776663333222221  11223334445556666666666


Q ss_pred             HHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048269          130 FFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMT  204 (465)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  204 (465)
                      -|+...+.. +.|...|..+..+|...|++..|.++|.+...--|.+...--...-.-+..|.+.+++..+....
T Consensus       584 ~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii  657 (1238)
T KOG1127|consen  584 EFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLII  657 (1238)
T ss_pred             HHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            666666544 44666677777777777777777777766652111121111112222345566666666655544

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.45  E-value=0.00032  Score=58.25  Aligned_cols=165  Identities=12%  Similarity=0.041  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHH
Q 048269          109 KTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYC  188 (465)
Q Consensus       109 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~  188 (465)
                      ..|..++-+....|+.+.|..+++.+...- +-+..+-..=.-.+-..|++++|+++|+.+....+-|.+++---+...-
T Consensus        53 ~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilk  131 (289)
T KOG3060|consen   53 TLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILK  131 (289)
T ss_pred             HHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHH
Confidence            345555555666666666776666665542 2222222111222334566777777777766444566666665555555


Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcC---ChH
Q 048269          189 DVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRG---KIS  265 (465)
Q Consensus       189 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~---~~~  265 (465)
                      ..|+-.+|++-+....+. +..|...|..+...|...|++++|.-+++++.-.  .|.++..+..+...+.-.|   +.+
T Consensus       132 a~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~--~P~n~l~f~rlae~~Yt~gg~eN~~  208 (289)
T KOG3060|consen  132 AQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI--QPFNPLYFQRLAEVLYTQGGAENLE  208 (289)
T ss_pred             HcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHH
Confidence            566666666666655554 4456677777777777777777777777776644  4545555555555544333   344


Q ss_pred             HHHHHHHHHHHC
Q 048269          266 QAYTMLEEMFKR  277 (465)
Q Consensus       266 ~a~~~~~~m~~~  277 (465)
                      .+.++|.+..+.
T Consensus       209 ~arkyy~~alkl  220 (289)
T KOG3060|consen  209 LARKYYERALKL  220 (289)
T ss_pred             HHHHHHHHHHHh
Confidence            566666666554

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.45  E-value=1.1e-05  Score=63.03  Aligned_cols=93  Identities=12%  Similarity=0.039  Sum_probs=36.5

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcC
Q 048269          112 KIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVG  191 (465)
Q Consensus       112 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g  191 (465)
                      ..+...+...|++++|.+.|+.+...+ +.+...+..+..++...|++++|..++++.....+.+...+..+...+...|
T Consensus        21 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g   99 (135)
T TIGR02552        21 YALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALG   99 (135)
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcC
Confidence            333333444444444444444433322 2233333334444444444444444444433222333333333344444444


Q ss_pred             CHHHHHHHHHHHHH
Q 048269          192 DLIEASKIWNLMTD  205 (465)
Q Consensus       192 ~~~~a~~~~~~m~~  205 (465)
                      ++++|...|+...+
T Consensus       100 ~~~~A~~~~~~al~  113 (135)
T TIGR02552       100 EPESALKALDLAIE  113 (135)
T ss_pred             CHHHHHHHHHHHHH
Confidence            44444444444333

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.43  E-value=0.00013  Score=72.37  Aligned_cols=240  Identities=12%  Similarity=0.072  Sum_probs=169.5

Q ss_pred             CCCCCCCHHhHHHHHHHHHhcCChhHH-HHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHH
Q 048269           67 QPCFAHNSITFNRMVDIIGKSRNIDLF-WETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEM  145 (465)
Q Consensus        67 ~~~~~~~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  145 (465)
                      ..|...++...+-+=.+++.-|..++| .+++.+.           ..++....+.....+++.-...... ....+...
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~   88 (694)
T PRK15179         21 TGGPASGPTILDLLEAALAEPGESEEAGRELLQQA-----------RQVLERHAAVHKPAAALPELLDYVR-RYPHTELF   88 (694)
T ss_pred             CCCCCCCcHHHhHHHHHhcCcccchhHHHHHHHHH-----------HHHHHHhhhhcchHhhHHHHHHHHH-hccccHHH
Confidence            334445566666666667777776666 3333333           2233444444444444443333333 34567888


Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhc
Q 048269          146 LNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKI  225 (465)
Q Consensus       146 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~  225 (465)
                      +-.|.....+.|..++|..+++....-.+.+......+...+.+.+++++|...++...... +-+......+..++.+.
T Consensus        89 ~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~~l~~~  167 (694)
T PRK15179         89 QVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAKSWDEI  167 (694)
T ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHh
Confidence            99999999999999999999999986667788889999999999999999999999998874 23566778888889999


Q ss_pred             CCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048269          226 NKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKV  305 (465)
Q Consensus       226 g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~  305 (465)
                      |++++|.++|+++...  .|.+..++..+..++...|+.++|...|+...+. ..+....|+..+.      ++..-..+
T Consensus       168 g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~~------~~~~~~~~  238 (694)
T PRK15179        168 GQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRLV------DLNADLAA  238 (694)
T ss_pred             cchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHHH------HHHHHHHH
Confidence            9999999999999974  4436789999999999999999999999998875 2334555555443      33444555


Q ss_pred             HHHhcC--------CCHhhHHHHHHHHHhcC
Q 048269          306 VEEIEK--------PDISLYHGLIKGLLRLR  328 (465)
Q Consensus       306 ~~~~~~--------~~~~~~~~li~~~~~~~  328 (465)
                      ++.+..        ..+.+...+|..|.+..
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (694)
T PRK15179        239 LRRLGVEGDGRDVPVSILVLEKMLQEIGRRR  269 (694)
T ss_pred             HHHcCcccccCCCceeeeeHHHHHHHHhhcC
Confidence            665543        23344556666665543

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.42  E-value=0.00051  Score=66.39  Aligned_cols=326  Identities=14%  Similarity=0.078  Sum_probs=157.9

Q ss_pred             CHHhHHHHHH--HHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhC-C--------CCC
Q 048269           73 NSITFNRMVD--IIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDC-G--------CEY  141 (465)
Q Consensus        73 ~~~~~~~l~~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~--------~~~  141 (465)
                      |..+-..+++  .|.--|+.+.|.+-.+-+.     +..+|..+.+.|.+..+++-|.-.+-.|... |        -.+
T Consensus       725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik-----S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~  799 (1416)
T KOG3617|consen  725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK-----SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNG  799 (1416)
T ss_pred             CHHHHHhhhceeEEEEeccHHHHHHHHHHHh-----hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCC
Confidence            4444444443  3445566666655554443     4446666666677666666666666655431 1        011


Q ss_pred             CHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH
Q 048269          142 SLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIET  221 (465)
Q Consensus       142 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~  221 (465)
                      + .+-..+.-.....|.+++|..+|.+-+        -|..|=+.|-..|.|++|.++-+.=-.-.   -..||..-..-
T Consensus       800 ~-e~eakvAvLAieLgMlEeA~~lYr~ck--------R~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~  867 (1416)
T KOG3617|consen  800 E-EDEAKVAVLAIELGMLEEALILYRQCK--------RYDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKY  867 (1416)
T ss_pred             c-chhhHHHHHHHHHhhHHHHHHHHHHHH--------HHHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHH
Confidence            1 111122222344566666666666554        24455555666666666666554322111   12344444444


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCC--------C----------CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 048269          222 FFKINKDDEAMKVFQMMRVKRMD--------D----------LGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADN  283 (465)
Q Consensus       222 ~~~~g~~~~A~~~~~~m~~~~~~--------~----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~  283 (465)
                      +-..++.+.|++.|++.......        |          .|...|.-...-+-..|+.+.|+.+|...+.       
T Consensus       868 Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-------  940 (1416)
T KOG3617|consen  868 LEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD-------  940 (1416)
T ss_pred             HHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-------
Confidence            55556666666666543211000        0          0111111111122222333333333322211       


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHhcCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccc
Q 048269          284 LTLSSIIYGLLARGRLREAYKVVEEIEKPDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKR  363 (465)
Q Consensus       284 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~  363 (465)
                        |-++++..|-.|+.++|-++-++-  .|....-.+.+.|-..|++.+|...|.+.+         +|...|+.| +..
T Consensus       941 --~fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnAIRlc-KEn 1006 (1416)
T KOG3617|consen  941 --YFSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNAIRLC-KEN 1006 (1416)
T ss_pred             --hhhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHHHHHH-Hhc
Confidence              222333333344444444443322  455556667888888899999998888764         222233322 111


Q ss_pred             C---------CCCCCCc-----------hHHHHHHHHHHHhcCCHHHHHHHHH--------HHHhCCCCC--CHhhHHHH
Q 048269          364 G---------RKGPDPL-----------VNFDTIFVGGLVKAGKSLDAAKYVE--------RVMNRGVEV--PRFDYNKF  413 (465)
Q Consensus       364 ~---------~~~~~~~-----------~~~~~~li~~~~~~g~~~~A~~~~~--------~m~~~~~~p--~~~~~~~l  413 (465)
                      +         ......|           ..-+...+..|-+.|.+.+|+++-=        +++..++.|  |+...+.-
T Consensus      1007 d~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~Rc 1086 (1416)
T KOG3617|consen 1007 DMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRC 1086 (1416)
T ss_pred             CHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHH
Confidence            1         0000000           0012234456677788888776521        122333433  55666666


Q ss_pred             HHHHhhccchHHHHHHHHHHHHc
Q 048269          414 LHYYSNEEGVVMFEEVGKKLREV  436 (465)
Q Consensus       414 l~~~~~~g~~~~a~~~~~~~~~~  436 (465)
                      .+-++...++++|..++-..++.
T Consensus      1087 adFF~~~~qyekAV~lL~~ar~~ 1109 (1416)
T KOG3617|consen 1087 ADFFENNQQYEKAVNLLCLAREF 1109 (1416)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHH
Confidence            66677788888888877655543

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.39  E-value=3.9e-05  Score=60.37  Aligned_cols=93  Identities=9%  Similarity=-0.156  Sum_probs=50.6

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCC
Q 048269          113 IALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGD  192 (465)
Q Consensus       113 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~  192 (465)
                      .....+...|++++|...|+...... +.+...|..+..++...|++++|...|++.....+.+..++..+..++...|+
T Consensus        29 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~  107 (144)
T PRK15359         29 ASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGE  107 (144)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCC
Confidence            34445555555555555555555543 33455555555555555555555555555553334455555555555555555


Q ss_pred             HHHHHHHHHHHHHC
Q 048269          193 LIEASKIWNLMTDE  206 (465)
Q Consensus       193 ~~~a~~~~~~m~~~  206 (465)
                      +++|...|+...+.
T Consensus       108 ~~eAi~~~~~Al~~  121 (144)
T PRK15359        108 PGLAREAFQTAIKM  121 (144)
T ss_pred             HHHHHHHHHHHHHh
Confidence            55555555555543

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.38  E-value=0.00038  Score=58.25  Aligned_cols=117  Identities=24%  Similarity=0.242  Sum_probs=63.3

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHh---
Q 048269          184 IKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCK---  260 (465)
Q Consensus       184 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~---  260 (465)
                      ...|+..|++++|++..+...      +......=+..+.+..+.+.|.+.++.|.+-.    +..|.+-|..++.+   
T Consensus       115 a~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id----ed~tLtQLA~awv~la~  184 (299)
T KOG3081|consen  115 AIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID----EDATLTQLAQAWVKLAT  184 (299)
T ss_pred             hHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc----hHHHHHHHHHHHHHHhc
Confidence            344566666666666555411      22333333344455556666666666665431    34455545554433   


Q ss_pred             -cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC
Q 048269          261 -RGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK  311 (465)
Q Consensus       261 -~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~  311 (465)
                       .+...+|.-+|++|-++ ..|++.+.+-...++...|++++|..+++....
T Consensus       185 ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~  235 (299)
T KOG3081|consen  185 GGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALD  235 (299)
T ss_pred             cchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHh
Confidence             23456666666666543 455666666666666666666666666666555

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.38  E-value=2e-05  Score=61.57  Aligned_cols=98  Identities=7%  Similarity=-0.067  Sum_probs=86.7

Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 048269           73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKT  152 (465)
Q Consensus        73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~  152 (465)
                      +......+...+...|++++|...|+.+...++.+...+..+...+...|++++|...++...+.+ +.+...+..+..+
T Consensus        16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~   94 (135)
T TIGR02552        16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAEC   94 (135)
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHH
Confidence            556677888889999999999999999988888788899999999999999999999999988765 5677888888899


Q ss_pred             HHcCCCHHHHHHHHHHhhc
Q 048269          153 LCQRKLVVEAKYLILKLSE  171 (465)
Q Consensus       153 ~~~~~~~~~a~~~~~~m~~  171 (465)
                      +...|++++|.+.|+....
T Consensus        95 ~~~~g~~~~A~~~~~~al~  113 (135)
T TIGR02552        95 LLALGEPESALKALDLAIE  113 (135)
T ss_pred             HHHcCCHHHHHHHHHHHHH
Confidence            9999999999999998873

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.36  E-value=0.00035  Score=68.86  Aligned_cols=182  Identities=14%  Similarity=0.052  Sum_probs=100.8

Q ss_pred             hhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHh
Q 048269           90 IDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKL  169 (465)
Q Consensus        90 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m  169 (465)
                      ...|...|-+..+.++.=...|..|...|....+...|...|+...+.+ ..+..........|+...+++.|..+.-..
T Consensus       474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~  552 (1238)
T KOG1127|consen  474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRA  552 (1238)
T ss_pred             HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence            4555555555555554334466666666666666667777777666654 445556666667777777777776663322


Q ss_pred             hcCCCCCH--HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC
Q 048269          170 SEWIKPNE--IAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLG  247 (465)
Q Consensus       170 ~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~  247 (465)
                      .+.-+.-.  ..|....-.|.+.++...++.-|+...... +-|...|..+..+|.++|++..|.++|.+....  .|.+
T Consensus       553 ~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s  629 (1238)
T KOG1127|consen  553 AQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS  629 (1238)
T ss_pred             hhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh
Confidence            21111111  122223334556666666666666665542 235566677777777777777777777665543  3312


Q ss_pred             cchHHHHHHHHHhcCChHHHHHHHHHHH
Q 048269          248 LSTYRIVIDWMCKRGKISQAYTMLEEMF  275 (465)
Q Consensus       248 ~~~~~~li~~~~~~~~~~~a~~~~~~m~  275 (465)
                      ...---....-+..|.+.++...+....
T Consensus       630 ~y~~fk~A~~ecd~GkYkeald~l~~ii  657 (1238)
T KOG1127|consen  630 KYGRFKEAVMECDNGKYKEALDALGLII  657 (1238)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            2222222233445666666666665554

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.36  E-value=0.00028  Score=67.25  Aligned_cols=139  Identities=18%  Similarity=0.198  Sum_probs=102.6

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcC
Q 048269          183 LIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRG  262 (465)
Q Consensus       183 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~  262 (465)
                      -+.+......|.+|+.+++.++...  .-..-|..+..-|...|+++.|.++|-+.          ..++-.|..|.+.|
T Consensus       738 aieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~----------~~~~dai~my~k~~  805 (1636)
T KOG3616|consen  738 AIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA----------DLFKDAIDMYGKAG  805 (1636)
T ss_pred             HHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc----------chhHHHHHHHhccc
Confidence            3455667788889999988887763  33455777888899999999999988642          24566788899999


Q ss_pred             ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 048269          263 KISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEKPDISLYHGLIKGLLRLRRAREATQVFREM  340 (465)
Q Consensus       263 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m  340 (465)
                      +|++|.++-.+..  |.......|..-..-+-+.|++.+|.+++-.+..|+.     .|..|-+.|..+..+++..+-
T Consensus       806 kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~  876 (1636)
T KOG3616|consen  806 KWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKH  876 (1636)
T ss_pred             cHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHh
Confidence            9999988876653  4444566666666677788889898888877776664     356677778777777776654

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.31  E-value=0.0011  Score=55.72  Aligned_cols=142  Identities=13%  Similarity=0.106  Sum_probs=64.4

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH--
Q 048269           77 FNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLC--  154 (465)
Q Consensus        77 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~--  154 (465)
                      ...-...|.+.|++++|++.....     .+......=..++.+..+++-|.+.++.|.+.   .+..+.+-|..++.  
T Consensus       111 ~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~l  182 (299)
T KOG3081|consen  111 LLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKL  182 (299)
T ss_pred             HHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHH
Confidence            333344555555555555554431     12222333334444555555555555555542   23333333333332  


Q ss_pred             --cCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCC
Q 048269          155 --QRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINK  227 (465)
Q Consensus       155 --~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~  227 (465)
                        ..+.+..|.-+|++|....+|+..+.+-+..++...|++++|..+++...... .-++.+...++-+-...|.
T Consensus       183 a~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gk  256 (299)
T KOG3081|consen  183 ATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGK  256 (299)
T ss_pred             hccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCC
Confidence              22345555555555554445555555555555555555555555555555442 1233444444433333333

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.29  E-value=1.4e-06  Score=49.65  Aligned_cols=34  Identities=26%  Similarity=0.466  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 048269          374 FDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPR  407 (465)
Q Consensus       374 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~  407 (465)
                      +|+++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~   35 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV   35 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence            6899999999999999999999999999999873

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.28  E-value=2.9e-05  Score=71.34  Aligned_cols=124  Identities=16%  Similarity=0.064  Sum_probs=100.2

Q ss_pred             CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh---cCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHH
Q 048269          137 CGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLS---EWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSID  213 (465)
Q Consensus       137 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~  213 (465)
                      .+.+.+......+++.+....+++.+..++-+..   .....-..|..++++.|.+.|..+.++.+++.=...|+-||..
T Consensus        60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~  139 (429)
T PF10037_consen   60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF  139 (429)
T ss_pred             cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence            3446677777888888888888888888888887   2333445566789999999999999999999888899999999


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhc
Q 048269          214 VVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKR  261 (465)
Q Consensus       214 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~  261 (465)
                      +++.|+..+.+.|++..|.++...|..++... +..|+...+.+|.+.
T Consensus       140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~-~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFD-NPSTQALALYSCYKY  186 (429)
T ss_pred             hHHHHHHHHhhcccHHHHHHHHHHHHHhhccC-CchHHHHHHHHHHHh
Confidence            99999999999999999999988888877666 777777777777666

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.24  E-value=2.1e-06  Score=48.97  Aligned_cols=33  Identities=36%  Similarity=0.735  Sum_probs=22.2

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCc
Q 048269          179 AYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPS  211 (465)
Q Consensus       179 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~  211 (465)
                      +|+++|.+|++.|++++|.++|++|.+.|+.||
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            566666666666666666666666666666665

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.22  E-value=2.4e-06  Score=48.31  Aligned_cols=33  Identities=24%  Similarity=0.513  Sum_probs=20.5

Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 048269          178 IAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEP  210 (465)
Q Consensus       178 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~  210 (465)
                      .+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            356666666666666666666666666666555

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.21  E-value=3.1e-06  Score=47.88  Aligned_cols=33  Identities=18%  Similarity=0.249  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 048269          373 NFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEV  405 (465)
Q Consensus       373 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p  405 (465)
                      .+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            468888888888888888888888888888877

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.19  E-value=0.00018  Score=56.79  Aligned_cols=126  Identities=10%  Similarity=-0.007  Sum_probs=75.9

Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCh---HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH--HHHHHH
Q 048269           75 ITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVND---KTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSL--EMLNKV  149 (465)
Q Consensus        75 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l  149 (465)
                      ..|..++..+ ..++...+...++.+....+.+.   ...-.+...+...|++++|...|+.+......++.  .....+
T Consensus        13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L   91 (145)
T PF09976_consen   13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL   91 (145)
T ss_pred             HHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence            3455555555 36677777777777776655442   23334556667777777777777777765422221  233345


Q ss_pred             HHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 048269          150 VKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNL  202 (465)
Q Consensus       150 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  202 (465)
                      ..++...|++++|+..++... ........+......|.+.|++++|...|+.
T Consensus        92 A~~~~~~~~~d~Al~~L~~~~-~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~  143 (145)
T PF09976_consen   92 ARILLQQGQYDEALATLQQIP-DEAFKALAAELLGDIYLAQGDYDEARAAYQK  143 (145)
T ss_pred             HHHHHHcCCHHHHHHHHHhcc-CcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            666677777777777776543 1223444556666777777777777777664

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.15  E-value=0.0032  Score=52.56  Aligned_cols=187  Identities=11%  Similarity=0.073  Sum_probs=144.3

Q ss_pred             ChhHHHHHHHHHhh-cCCC-CCCCHH-hHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHH
Q 048269           52 SWRPVYLFFQYTQK-AQPC-FAHNSI-TFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMV  128 (465)
Q Consensus        52 ~~~~a~~~f~~~~~-~~~~-~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  128 (465)
                      +++...++++.++. ...| ..++.. .|..++-+....|+.+.|..+++.+..+-+-+..+-..-.-.+-..|++++|+
T Consensus        27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~  106 (289)
T KOG3060|consen   27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAI  106 (289)
T ss_pred             CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHH
Confidence            78888888888732 1222 445543 46677888889999999999999988776545554444444556679999999


Q ss_pred             HHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 048269          129 NFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGF  208 (465)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~  208 (465)
                      ++|+.+.+.+ +.|..++..=+...-..|+--+|++-+.+....+..|...|.-+...|...|++++|.-.++++.-.  
T Consensus       107 e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~--  183 (289)
T KOG3060|consen  107 EYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI--  183 (289)
T ss_pred             HHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc--
Confidence            9999999977 6777888776667777888889999998888888999999999999999999999999999999875  


Q ss_pred             CC-cHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHc
Q 048269          209 EP-SIDVVDKMIETFFKIN---KDDEAMKVFQMMRVK  241 (465)
Q Consensus       209 ~~-~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~  241 (465)
                      .| +.-.+..+...+.-.|   +.+.|.+.|....+.
T Consensus       184 ~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl  220 (289)
T KOG3060|consen  184 QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL  220 (289)
T ss_pred             CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence            45 4444555555554444   567788999888766

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.15  E-value=0.00018  Score=65.94  Aligned_cols=121  Identities=16%  Similarity=0.205  Sum_probs=85.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048269          215 VDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLL  294 (465)
Q Consensus       215 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  294 (465)
                      ...|+..+...++++.|.++|+++.+.     ++.....++..+...++-.+|.+++++..+.. +-+......-...|.
T Consensus       172 v~~Ll~~l~~t~~~~~ai~lle~L~~~-----~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl  245 (395)
T PF09295_consen  172 VDTLLKYLSLTQRYDEAIELLEKLRER-----DPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLL  245 (395)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHhc-----CCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence            345556666677788888888887766     33355567777777777777888877777552 235555666666777


Q ss_pred             hcCCHHHHHHHHHHhcC--C-CHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048269          295 ARGRLREAYKVVEEIEK--P-DISLYHGLIKGLLRLRRAREATQVFREMI  341 (465)
Q Consensus       295 ~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~  341 (465)
                      +.++.+.|..+.+++..  | +..+|..|..+|...|+++.|+-.++.+-
T Consensus       246 ~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  246 SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP  295 (395)
T ss_pred             hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence            88888888888887777  4 44578888888888888888887777664

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.15  E-value=0.00011  Score=67.32  Aligned_cols=127  Identities=10%  Similarity=0.049  Sum_probs=84.6

Q ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHH
Q 048269          107 NDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKG  186 (465)
Q Consensus       107 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~  186 (465)
                      +-.....++..+...++++.|+++|+++.+..  |+.  ...+++.+...++-.+|.+++++.....+.+..........
T Consensus       168 ~NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~f  243 (395)
T PF09295_consen  168 NNYLVDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEF  243 (395)
T ss_pred             chHHHHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            44445556666666677777777777777653  443  33466666666777777777777664445566666666666


Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048269          187 YCDVGDLIEASKIWNLMTDEGFEPS-IDVVDKMIETFFKINKDDEAMKVFQMMR  239 (465)
Q Consensus       187 ~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~  239 (465)
                      +.+.++++.|+.+.+++.+.  .|+ -.+|..|..+|.+.|+++.|+..++.+.
T Consensus       244 Ll~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  244 LLSKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP  295 (395)
T ss_pred             HHhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence            77777777777777777765  344 3477777777777777777777776654

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.11  E-value=0.00022  Score=56.37  Aligned_cols=115  Identities=15%  Similarity=0.092  Sum_probs=51.7

Q ss_pred             CCCHHHHHHHHHHhhcCCCCC---HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcH--HHHHHHHHHHHhcCCHHH
Q 048269          156 RKLVVEAKYLILKLSEWIKPN---EIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSI--DVVDKMIETFFKINKDDE  230 (465)
Q Consensus       156 ~~~~~~a~~~~~~m~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~--~~~~~li~~~~~~g~~~~  230 (465)
                      .++...+...++.+....+.+   ....-.+...+...|++++|...|+........|+.  .....+...+...|++++
T Consensus        24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~  103 (145)
T PF09976_consen   24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE  103 (145)
T ss_pred             CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence            445555555555554222222   122223334455555555555555555554311111  122334445555555555


Q ss_pred             HHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 048269          231 AMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEE  273 (465)
Q Consensus       231 A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~  273 (465)
                      |+..++......  . ....+......|.+.|+.++|...|+.
T Consensus       104 Al~~L~~~~~~~--~-~~~~~~~~Gdi~~~~g~~~~A~~~y~~  143 (145)
T PF09976_consen  104 ALATLQQIPDEA--F-KALAAELLGDIYLAQGDYDEARAAYQK  143 (145)
T ss_pred             HHHHHHhccCcc--h-HHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            555554422211  1 233444445555555555555555543

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.03  E-value=0.0001  Score=67.87  Aligned_cols=125  Identities=10%  Similarity=0.107  Sum_probs=107.2

Q ss_pred             cCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCc
Q 048269          171 EWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDE--GFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGL  248 (465)
Q Consensus       171 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~  248 (465)
                      .+.+.+......+++.+....+++.+..++..++..  ....-..|..++++.|.+.|..+.+.+++..=...|+-| |.
T Consensus        60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~-D~  138 (429)
T PF10037_consen   60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFP-DN  138 (429)
T ss_pred             cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCC-Ch
Confidence            455778888899999999999999999999998875  222233455699999999999999999999999999999 99


Q ss_pred             chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048269          249 STYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLAR  296 (465)
Q Consensus       249 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~  296 (465)
                      .+++.|++.+.+.|++..|.++..+|...+...+..|+...+.+|.+.
T Consensus       139 ~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  139 FSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             hhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            999999999999999999999999999888777778877777766665

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.01  E-value=0.00019  Score=63.50  Aligned_cols=131  Identities=8%  Similarity=0.067  Sum_probs=88.3

Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHh-cCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 048269           75 ITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAE-VRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTL  153 (465)
Q Consensus        75 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~  153 (465)
                      .+|..+++..-+.+..+.|..+|.+..+.+..+..+|......-.+ .++.+.|..+|+...+. ++.+...|...++.+
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l   80 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL   80 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence            4677777777777778888888888876555566666665555333 56666688888877764 356667777777777


Q ss_pred             HcCCCHHHHHHHHHHhhcCCCCCH---HhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048269          154 CQRKLVVEAKYLILKLSEWIKPNE---IAYGWLIKGYCDVGDLIEASKIWNLMTDE  206 (465)
Q Consensus       154 ~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~  206 (465)
                      ...++.+.|..+|++....+.++.   ..|...+..=.+.|+++.+.++.+++.+.
T Consensus        81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~  136 (280)
T PF05843_consen   81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL  136 (280)
T ss_dssp             HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred             HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            778888888888888774444333   46777777777777777777777777664

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=97.99  E-value=0.014  Score=54.20  Aligned_cols=184  Identities=12%  Similarity=0.075  Sum_probs=126.1

Q ss_pred             HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH---cCCCHHHHHHHHHHhh--cCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 048269          124 LKKMVNFFHIMNDCGCEYSLEMLNKVVKTLC---QRKLVVEAKYLILKLS--EWIKPNEIAYGWLIKGYCDVGDLIEASK  198 (465)
Q Consensus       124 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~---~~~~~~~a~~~~~~m~--~~~~~~~~~~~~li~~~~~~g~~~~a~~  198 (465)
                      .+++.++++...+.-..-+..+|..+.+---   .....+.....++++.  ....|+ .+|..+|+.-.+..-++.|..
T Consensus       309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~  387 (656)
T KOG1914|consen  309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARK  387 (656)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHH
Confidence            3455556655554322233333433332111   1123566667777766  333443 467788888888888999999


Q ss_pred             HHHHHHHCCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 048269          199 IWNLMTDEGFEP-SIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKR  277 (465)
Q Consensus       199 ~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  277 (465)
                      +|.++.+.+..+ .+.++++++.-+| .++.+-|.++|+.=.+.  .+.++.--...+.-+...++-..+..+|+.....
T Consensus       388 iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s  464 (656)
T KOG1914|consen  388 IFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS  464 (656)
T ss_pred             HHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence            999999887777 7778888888776 56788899999875544  2324445566677778888889999999999888


Q ss_pred             CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhcC
Q 048269          278 GIEAD--NLTLSSIIYGLLARGRLREAYKVVEEIEK  311 (465)
Q Consensus       278 ~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~  311 (465)
                      ++.+|  ...|..++..-++-|+...+.++-+++..
T Consensus       465 ~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~  500 (656)
T KOG1914|consen  465 VLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT  500 (656)
T ss_pred             cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            66554  46788899888889998888887776654

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.99  E-value=0.00023  Score=53.97  Aligned_cols=95  Identities=8%  Similarity=-0.062  Sum_probs=46.7

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC--CCHHHHHHHH
Q 048269           76 TFNRMVDIIGKSRNIDLFWETLQEMGRRRLVN---DKTFKIALMTLAEVRELKKMVNFFHIMNDCGCE--YSLEMLNKVV  150 (465)
Q Consensus        76 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll  150 (465)
                      ++..+...+.+.|++++|.+.|+.+.+..+.+   ...+..+..++.+.|+++.|...|+.+......  .....+..+.
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~   83 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG   83 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence            34445555555555555555555555433311   234444555555555555555555555442100  1123344444


Q ss_pred             HHHHcCCCHHHHHHHHHHhh
Q 048269          151 KTLCQRKLVVEAKYLILKLS  170 (465)
Q Consensus       151 ~~~~~~~~~~~a~~~~~~m~  170 (465)
                      .++.+.|+.++|.+.++++.
T Consensus        84 ~~~~~~~~~~~A~~~~~~~~  103 (119)
T TIGR02795        84 MSLQELGDKEKAKATLQQVI  103 (119)
T ss_pred             HHHHHhCChHHHHHHHHHHH
Confidence            55555555555555555555

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=97.96  E-value=0.00013  Score=52.49  Aligned_cols=76  Identities=18%  Similarity=0.322  Sum_probs=41.5

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCC-CCcHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHcCCCCCCcchHHH
Q 048269          183 LIKGYCDVGDLIEASKIWNLMTDEGF-EPSIDVVDKMIETFFKIN--------KDDEAMKVFQMMRVKRMDDLGLSTYRI  253 (465)
Q Consensus       183 li~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~~~~~~~~~~~~~  253 (465)
                      .|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++..        +.-..+.+|+.|...++.| +..+|+.
T Consensus        31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP-~~etYni  109 (120)
T PF08579_consen   31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKP-NDETYNI  109 (120)
T ss_pred             HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCC-cHHHHHH
Confidence            34444445666666666666666666 566666666666555432        1223445555555555555 5555555


Q ss_pred             HHHHHH
Q 048269          254 VIDWMC  259 (465)
Q Consensus       254 li~~~~  259 (465)
                      ++..+.
T Consensus       110 vl~~Ll  115 (120)
T PF08579_consen  110 VLGSLL  115 (120)
T ss_pred             HHHHHH
Confidence            555443

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.93  E-value=0.0002  Score=51.49  Aligned_cols=92  Identities=8%  Similarity=-0.068  Sum_probs=46.5

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcC
Q 048269           77 FNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQR  156 (465)
Q Consensus        77 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~  156 (465)
                      +..+...+...|++++|...++...+..+.+..++..+...+...+++++|.+.|+...... +.+..++..+...+...
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHH
Confidence            33444455555555555555555555444444445555555555555555555555554432 22333444444555555


Q ss_pred             CCHHHHHHHHHHh
Q 048269          157 KLVVEAKYLILKL  169 (465)
Q Consensus       157 ~~~~~a~~~~~~m  169 (465)
                      |+.+.|...+...
T Consensus        82 ~~~~~a~~~~~~~   94 (100)
T cd00189          82 GKYEEALEAYEKA   94 (100)
T ss_pred             HhHHHHHHHHHHH
Confidence            5555555555444

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.93  E-value=1.4e-05  Score=43.94  Aligned_cols=29  Identities=38%  Similarity=0.843  Sum_probs=16.9

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 048269          179 AYGWLIKGYCDVGDLIEASKIWNLMTDEG  207 (465)
Q Consensus       179 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g  207 (465)
                      +|+.+|++|++.|++++|.++|++|.+.|
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g   30 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRERG   30 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence            45555566666666666666665555554

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.88  E-value=1.9e-05  Score=43.37  Aligned_cols=30  Identities=20%  Similarity=0.370  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 048269          374 FDTIFVGGLVKAGKSLDAAKYVERVMNRGV  403 (465)
Q Consensus       374 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~  403 (465)
                      +|+.++++|++.|++++|.++|++|.+.|+
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~   31 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRERGI   31 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence            677888888888888888888888887664

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.88  E-value=0.033  Score=55.04  Aligned_cols=102  Identities=14%  Similarity=0.062  Sum_probs=47.9

Q ss_pred             HhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 048269           85 GKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKY  164 (465)
Q Consensus        85 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~  164 (465)
                      .+.|+.++|..+++.....+..+..|...+-.+|...++.++|..+|+.....  .|+......+..+|.+.+++.+-.+
T Consensus        54 ~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQk  131 (932)
T KOG2053|consen   54 FRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQK  131 (932)
T ss_pred             HHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555444443344455555555555555555555555555443  3444444444455555544444333


Q ss_pred             HHHHhhcCCCCCHHhHHHHHHHHH
Q 048269          165 LILKLSEWIKPNEIAYGWLIKGYC  188 (465)
Q Consensus       165 ~~~~m~~~~~~~~~~~~~li~~~~  188 (465)
                      .--++-..++-+...|-.+++.+.
T Consensus       132 aa~~LyK~~pk~~yyfWsV~Slil  155 (932)
T KOG2053|consen  132 AALQLYKNFPKRAYYFWSVISLIL  155 (932)
T ss_pred             HHHHHHHhCCcccchHHHHHHHHH
Confidence            333333333344444444444443

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.87  E-value=0.0028  Score=56.39  Aligned_cols=211  Identities=12%  Similarity=0.166  Sum_probs=110.2

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHhhC----CCC--ChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 048269           77 FNRMVDIIGKSRNIDLFWETLQEMGRR----RLV--NDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVV  150 (465)
Q Consensus        77 ~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll  150 (465)
                      |......|-..|++++|.+.|.+....    +-+  ....|......+.+. ++++|++.++.               .+
T Consensus        38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~---------------A~  101 (282)
T PF14938_consen   38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEK---------------AI  101 (282)
T ss_dssp             HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHH---------------HH
T ss_pred             HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHH---------------HH
Confidence            444556667777777777777665321    111  112233333333222 44444444433               34


Q ss_pred             HHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhc-CCHHHHHHHHHHHHH----CCCCC--cHHHHHHHHHHHH
Q 048269          151 KTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDV-GDLIEASKIWNLMTD----EGFEP--SIDVVDKMIETFF  223 (465)
Q Consensus       151 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~----~g~~~--~~~~~~~li~~~~  223 (465)
                      ..|...|++..|-+++.++              ...|... |+++.|++.|.+..+    .| .+  -..++..+...+.
T Consensus       102 ~~y~~~G~~~~aA~~~~~l--------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~  166 (282)
T PF14938_consen  102 EIYREAGRFSQAAKCLKEL--------------AEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYA  166 (282)
T ss_dssp             HHHHHCT-HHHHHHHHHHH--------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCcHHHHHHHHHHH--------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHH
Confidence            4566666666665555544              3455555 777777777777654    22 11  1345667777788


Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCC----Cc-chHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCC--HHHHHHHHHHHH
Q 048269          224 KINKDDEAMKVFQMMRVKRMDDL----GL-STYRIVIDWMCKRGKISQAYTMLEEMFKRG--IEAD--NLTLSSIIYGLL  294 (465)
Q Consensus       224 ~~g~~~~A~~~~~~m~~~~~~~~----~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~~~--~~~~~~li~~~~  294 (465)
                      +.|++++|.++|+++.......+    +. ..|-..+-++...||+..|.+.+++.....  +..+  ......|+.+|-
T Consensus       167 ~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~  246 (282)
T PF14938_consen  167 RLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYE  246 (282)
T ss_dssp             HTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH
T ss_pred             HhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH
Confidence            88888888888888766433220    11 122333445666788888888888876542  2212  334455566654


Q ss_pred             h--cCCHHHHHHHHHHhcCCCHhhHH
Q 048269          295 A--RGRLREAYKVVEEIEKPDISLYH  318 (465)
Q Consensus       295 ~--~~~~~~a~~~~~~~~~~~~~~~~  318 (465)
                      .  ...+..+..-|+.+.+.|...-.
T Consensus       247 ~~D~e~f~~av~~~d~~~~ld~w~~~  272 (282)
T PF14938_consen  247 EGDVEAFTEAVAEYDSISRLDNWKTK  272 (282)
T ss_dssp             TT-CCCHHHHCHHHTTSS---HHHHH
T ss_pred             hCCHHHHHHHHHHHcccCccHHHHHH
Confidence            3  23466666666666655544333

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.86  E-value=0.00058  Score=51.78  Aligned_cols=17  Identities=12%  Similarity=0.288  Sum_probs=6.2

Q ss_pred             HHhcCCHHHHHHHHHHH
Q 048269          222 FFKINKDDEAMKVFQMM  238 (465)
Q Consensus       222 ~~~~g~~~~A~~~~~~m  238 (465)
                      +.+.|++++|.+.++++
T Consensus        86 ~~~~~~~~~A~~~~~~~  102 (119)
T TIGR02795        86 LQELGDKEKAKATLQQV  102 (119)
T ss_pred             HHHhCChHHHHHHHHHH
Confidence            33333333333333333

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=97.84  E-value=0.00036  Score=50.27  Aligned_cols=80  Identities=15%  Similarity=0.273  Sum_probs=67.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCCcchHHHHHHHHHhcC--------ChHHHHHHHHHHHHCCCCCCHHH
Q 048269          215 VDKMIETFFKINKDDEAMKVFQMMRVKRM-DDLGLSTYRIVIDWMCKRG--------KISQAYTMLEEMFKRGIEADNLT  285 (465)
Q Consensus       215 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~~li~~~~~~~--------~~~~a~~~~~~m~~~~~~~~~~~  285 (465)
                      -...|..+...+++.....+|+.+.+.|+ .| +..+|+.++.+.++..        +.-..+.+|+.|...+++|+..+
T Consensus        28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lP-sv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et  106 (120)
T PF08579_consen   28 QIDNINSCFENEDYNIINPLYQSLKRNGITLP-SVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET  106 (120)
T ss_pred             HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence            34566677777999999999999999999 67 9999999999987654        23467889999999999999999


Q ss_pred             HHHHHHHHHh
Q 048269          286 LSSIIYGLLA  295 (465)
Q Consensus       286 ~~~li~~~~~  295 (465)
                      |+.++..+.+
T Consensus       107 Ynivl~~Llk  116 (120)
T PF08579_consen  107 YNIVLGSLLK  116 (120)
T ss_pred             HHHHHHHHHH
Confidence            9999988765

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.81  E-value=0.00039  Score=49.92  Aligned_cols=91  Identities=13%  Similarity=0.023  Sum_probs=41.6

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCC
Q 048269          113 IALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGD  192 (465)
Q Consensus       113 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~  192 (465)
                      .+...+...|++++|+..++...+.. +.+...+..+..++...+++++|.+.++......+.+..++..+...+...|+
T Consensus         5 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (100)
T cd00189           5 NLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGK   83 (100)
T ss_pred             HHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHh
Confidence            34444445555555555555554432 22223444444444445555555555554442223333344444444444455


Q ss_pred             HHHHHHHHHHHH
Q 048269          193 LIEASKIWNLMT  204 (465)
Q Consensus       193 ~~~a~~~~~~m~  204 (465)
                      ++.|...+....
T Consensus        84 ~~~a~~~~~~~~   95 (100)
T cd00189          84 YEEALEAYEKAL   95 (100)
T ss_pred             HHHHHHHHHHHH
Confidence            555544444443

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.77  E-value=0.0008  Score=54.96  Aligned_cols=112  Identities=16%  Similarity=0.134  Sum_probs=83.2

Q ss_pred             HHHHHHh--cCCCHhhHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccCCCCCCCchHHH
Q 048269          303 YKVVEEI--EKPDISLYHGLIKGLLR-----LRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFD  375 (465)
Q Consensus       303 ~~~~~~~--~~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~  375 (465)
                      ...|+..  ...+-.+|..++..|.+     .|..+=....++.|.+.|+.-|..+|+.||..+-     +|.-.....+
T Consensus        34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFP-----Kg~fvp~n~f  108 (228)
T PF06239_consen   34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFP-----KGKFVPRNFF  108 (228)
T ss_pred             HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCC-----CCCcccccHH
Confidence            3455555  33677777777777764     4677888888899999999999999999999982     1222223334


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhcc
Q 048269          376 TIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNEE  421 (465)
Q Consensus       376 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g  421 (465)
                      .++...|-+  +-+-|++++++|...|+.||..++..+++.+.+.+
T Consensus       109 Q~~F~hyp~--Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s  152 (228)
T PF06239_consen  109 QAEFMHYPR--QQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS  152 (228)
T ss_pred             HHHhccCcH--HHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence            444444433  44669999999999999999999999999998764

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.75  E-value=0.013  Score=50.54  Aligned_cols=183  Identities=9%  Similarity=-0.074  Sum_probs=97.1

Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHH---HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHH
Q 048269           73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKT---FKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKV  149 (465)
Q Consensus        73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  149 (465)
                      ++..+-.....+.+.|++++|.+.|+.+....+-++.+   .-.++.++.+.+++++|...+++..+....-....|...
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y  110 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY  110 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence            44444445556666788888888888887766544333   245566777788888888888877764311111222222


Q ss_pred             HHHHHc--CC---------------CH---HHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 048269          150 VKTLCQ--RK---------------LV---VEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFE  209 (465)
Q Consensus       150 l~~~~~--~~---------------~~---~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~  209 (465)
                      +.+.+.  .+               +.   .+|++.|              ..+++-|-.+.-..+|...+..+...   
T Consensus       111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~--------------~~li~~yP~S~ya~~A~~rl~~l~~~---  173 (243)
T PRK10866        111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDF--------------SKLVRGYPNSQYTTDATKRLVFLKDR---  173 (243)
T ss_pred             HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHH--------------HHHHHHCcCChhHHHHHHHHHHHHHH---
Confidence            222221  00               11   1222222              23333333333344444444444321   


Q ss_pred             CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 048269          210 PSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDD---LGLSTYRIVIDWMCKRGKISQAYTMLEEMF  275 (465)
Q Consensus       210 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  275 (465)
                      .-.. -..+.+.|.+.|.+..|..-++.+.+.  -|   ........++.+|...|..+.|..+...+.
T Consensus       174 la~~-e~~ia~~Y~~~~~y~AA~~r~~~v~~~--Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~  239 (243)
T PRK10866        174 LAKY-ELSVAEYYTKRGAYVAVVNRVEQMLRD--YPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA  239 (243)
T ss_pred             HHHH-HHHHHHHHHHcCchHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence            1111 124556677777777777777777754  23   123345566677777777777777665543

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.73  E-value=0.0021  Score=50.08  Aligned_cols=97  Identities=5%  Similarity=-0.176  Sum_probs=76.1

Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 048269           73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKT  152 (465)
Q Consensus        73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~  152 (465)
                      +......+...+...|++++|..+|+.+...++.+..-|-.|..++-..|++++|+..|....... +-|+..+-.+..+
T Consensus        34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c  112 (157)
T PRK15363         34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAEC  112 (157)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence            344455566667778888888888888888887777778888888888888888888888887766 4667777778888


Q ss_pred             HHcCCCHHHHHHHHHHhh
Q 048269          153 LCQRKLVVEAKYLILKLS  170 (465)
Q Consensus       153 ~~~~~~~~~a~~~~~~m~  170 (465)
                      +...|+.+.|.+.|+...
T Consensus       113 ~L~lG~~~~A~~aF~~Ai  130 (157)
T PRK15363        113 YLACDNVCYAIKALKAVV  130 (157)
T ss_pred             HHHcCCHHHHHHHHHHHH
Confidence            888888888888888766

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.71  E-value=0.0028  Score=51.75  Aligned_cols=83  Identities=14%  Similarity=0.062  Sum_probs=40.7

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHH
Q 048269          179 AYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPS--IDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVID  256 (465)
Q Consensus       179 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~  256 (465)
                      .+..+...+...|++++|...|++..+.+..+.  ...+..+..++.+.|++++|...+++....  .|.+...+..+..
T Consensus        37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~  114 (172)
T PRK02603         37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNIAV  114 (172)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHH
Confidence            344444555555555555555555544321111  234555555555556666666555555543  2323444444444


Q ss_pred             HHHhcCC
Q 048269          257 WMCKRGK  263 (465)
Q Consensus       257 ~~~~~~~  263 (465)
                      .+...|+
T Consensus       115 ~~~~~g~  121 (172)
T PRK02603        115 IYHKRGE  121 (172)
T ss_pred             HHHHcCC
Confidence            5554444

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.71  E-value=0.0014  Score=60.31  Aligned_cols=89  Identities=7%  Similarity=-0.129  Sum_probs=59.1

Q ss_pred             HHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHH
Q 048269           81 VDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVV  160 (465)
Q Consensus        81 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~  160 (465)
                      ...+...|++++|++.|+++.+.++.+...|..+..++.+.|++++|+..++.+.... +.+...|..+..+|...|+++
T Consensus         9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~   87 (356)
T PLN03088          9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ   87 (356)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence            3445566677777777777776666666666666677777777777777777766653 345556666666666777777


Q ss_pred             HHHHHHHHhh
Q 048269          161 EAKYLILKLS  170 (465)
Q Consensus       161 ~a~~~~~~m~  170 (465)
                      +|+..|++..
T Consensus        88 eA~~~~~~al   97 (356)
T PLN03088         88 TAKAALEKGA   97 (356)
T ss_pred             HHHHHHHHHH
Confidence            7777776665

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.71  E-value=0.049  Score=52.32  Aligned_cols=121  Identities=9%  Similarity=0.013  Sum_probs=72.5

Q ss_pred             CCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhC-CCC---------ChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC
Q 048269           71 AHNSITFNRMVDIIGKSRNIDLFWETLQEMGRR-RLV---------NDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCE  140 (465)
Q Consensus        71 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  140 (465)
                      .|.+..|..+.......-.++.|...|-+...- |+.         +...-.+=+.  +-.|++++|+++|-++.+++  
T Consensus       689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~--~~~g~feeaek~yld~drrD--  764 (1189)
T KOG2041|consen  689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEAEKLYLDADRRD--  764 (1189)
T ss_pred             CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--hhhcchhHhhhhhhccchhh--
Confidence            368888988888888777788888777655432 221         1111111122  23588899999888777653  


Q ss_pred             CCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcC--CCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 048269          141 YSLEMLNKVVKTLCQRKLVVEAKYLILKLSEW--IKPNEIAYGWLIKGYCDVGDLIEASKIWNL  202 (465)
Q Consensus       141 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  202 (465)
                             ..+..+.+.|++-.+.++++.-..+  ...-..+|+.+...++....|++|.+.|..
T Consensus       765 -------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~  821 (1189)
T KOG2041|consen  765 -------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY  821 (1189)
T ss_pred             -------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                   3455666677776666665542211  112235666666666666666666666654

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.69  E-value=0.0013  Score=58.35  Aligned_cols=131  Identities=8%  Similarity=-0.013  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH-HHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHH
Q 048269          109 KTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKT-LCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGY  187 (465)
Q Consensus       109 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~  187 (465)
                      .+|..+++..-+.+..+.|..+|.+..+.+ ..+..+|-..... +...++.+.|.++|+.....++.+...|..-++.+
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l   80 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL   80 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence            367777788888888888888888887543 2334444444444 23356666688888887755677778888888888


Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCCcH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048269          188 CDVGDLIEASKIWNLMTDEGFEPSI---DVVDKMIETFFKINKDDEAMKVFQMMRVK  241 (465)
Q Consensus       188 ~~~g~~~~a~~~~~~m~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~  241 (465)
                      .+.++.+.|..+|+..... +.++.   ..|...++.=.+.|+.+.+.++.+.+.+.
T Consensus        81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~  136 (280)
T PF05843_consen   81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL  136 (280)
T ss_dssp             HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred             HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            8888888888888888765 32222   47777777777778888888887777664

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.66  E-value=0.0072  Score=49.28  Aligned_cols=88  Identities=10%  Similarity=-0.066  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHH
Q 048269          109 KTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYS--LEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKG  186 (465)
Q Consensus       109 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~  186 (465)
                      ..+..+...+...|++++|...|++..+....+.  ...+..+..++.+.|++++|...+++.....+.+...+..+...
T Consensus        36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~  115 (172)
T PRK02603         36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI  115 (172)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence            3455555556666666666666666654321111  24455555666666666666666666553233344455555555


Q ss_pred             HHhcCCHHHH
Q 048269          187 YCDVGDLIEA  196 (465)
Q Consensus       187 ~~~~g~~~~a  196 (465)
                      +...|+...+
T Consensus       116 ~~~~g~~~~a  125 (172)
T PRK02603        116 YHKRGEKAEE  125 (172)
T ss_pred             HHHcCChHhH
Confidence            5555554433

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.61  E-value=0.00012  Score=51.63  Aligned_cols=19  Identities=26%  Similarity=0.607  Sum_probs=7.7

Q ss_pred             HHHHHHhcCCHHHHHHHHH
Q 048269          218 MIETFFKINKDDEAMKVFQ  236 (465)
Q Consensus       218 li~~~~~~g~~~~A~~~~~  236 (465)
                      +..++.+.|++++|.++++
T Consensus        31 la~~~~~~~~y~~A~~~~~   49 (84)
T PF12895_consen   31 LAQCYFQQGKYEEAIELLQ   49 (84)
T ss_dssp             HHHHHHHTTHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHH
Confidence            3344444444444444443

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.60  E-value=0.0067  Score=50.94  Aligned_cols=190  Identities=8%  Similarity=-0.001  Sum_probs=100.3

Q ss_pred             CCCCHHHHHHHHhcCCCChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHH
Q 048269           35 FNLTHEFFLQICNNFPLSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIA  114 (465)
Q Consensus        35 ~~~~~~~~~~~l~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l  114 (465)
                      ++++-..+...+......|...+.-.... .         .....++..+-.....+..++.|++=..      .+.+.+
T Consensus       120 VPFsmR~lhAe~~~~lgnpqesLdRl~~L-~---------~~V~~ii~~~e~~~~~ESsv~lW~KRl~------~Vmy~~  183 (366)
T KOG2796|consen  120 VPFSMRILHAELQQYLGNPQESLDRLHKL-K---------TVVSKILANLEQGLAEESSIRLWRKRLG------RVMYSM  183 (366)
T ss_pred             ccHHHHHHHHHHHHhcCCcHHHHHHHHHH-H---------HHHHHHHHHHHhccchhhHHHHHHHHHH------HHHHHH
Confidence            45555555666656555555544443332 0         1122233333333333555555554321      245555


Q ss_pred             HHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh-cCCCCCHHhHHHH-----HHHHH
Q 048269          115 LMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLS-EWIKPNEIAYGWL-----IKGYC  188 (465)
Q Consensus       115 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~-~~~~~~~~~~~~l-----i~~~~  188 (465)
                      +..+.-.|.+.-....+.+..+...+.++.....|++.-.+.|+.+.|...|++.. ..-..|..+++.+     ...|.
T Consensus       184 ~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~l  263 (366)
T KOG2796|consen  184 ANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHL  263 (366)
T ss_pred             HHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhhee
Confidence            66666666666666666666665545566666666666666777777776666554 2223333333322     23344


Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048269          189 DVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVK  241 (465)
Q Consensus       189 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  241 (465)
                      -.+++.+|...|.+..... .-|+...|.-.-+..-.|+...|.+.++.|.+.
T Consensus       264 g~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~  315 (366)
T KOG2796|consen  264 GQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ  315 (366)
T ss_pred             cccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            5566666666666665543 223444444333444456667777777776654

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.58  E-value=0.0022  Score=58.93  Aligned_cols=91  Identities=11%  Similarity=-0.078  Sum_probs=70.6

Q ss_pred             HHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHH
Q 048269          115 LMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLI  194 (465)
Q Consensus       115 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~  194 (465)
                      ...+...|++++|++.|++..+.. +.+...|..+..+|.+.|++++|+..+++...-.+.+...|..+..+|...|+++
T Consensus         9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~   87 (356)
T PLN03088          9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ   87 (356)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence            455667788888888888888765 4566777777788888888888888888877444567777888888888888888


Q ss_pred             HHHHHHHHHHHC
Q 048269          195 EASKIWNLMTDE  206 (465)
Q Consensus       195 ~a~~~~~~m~~~  206 (465)
                      +|...|+...+.
T Consensus        88 eA~~~~~~al~l   99 (356)
T PLN03088         88 TAKAALEKGASL   99 (356)
T ss_pred             HHHHHHHHHHHh
Confidence            888888888775

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.58  E-value=0.005  Score=48.01  Aligned_cols=93  Identities=16%  Similarity=0.094  Sum_probs=54.8

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcC
Q 048269          112 KIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVG  191 (465)
Q Consensus       112 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g  191 (465)
                      -.+...+...|++++|..+|+.+.... +-+..-|-.|.-++-..|++++|+..|.....-.+.|+..+-.+..++...|
T Consensus        39 Y~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG  117 (157)
T PRK15363         39 YRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACD  117 (157)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcC
Confidence            334444556666666666666666543 3344445555566666666666666666655222455566666666666666


Q ss_pred             CHHHHHHHHHHHHH
Q 048269          192 DLIEASKIWNLMTD  205 (465)
Q Consensus       192 ~~~~a~~~~~~m~~  205 (465)
                      +.+.|.+.|+....
T Consensus       118 ~~~~A~~aF~~Ai~  131 (157)
T PRK15363        118 NVCYAIKALKAVVR  131 (157)
T ss_pred             CHHHHHHHHHHHHH
Confidence            66666666665554

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.57  E-value=0.0056  Score=54.45  Aligned_cols=139  Identities=17%  Similarity=0.177  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHhc-CCHHHHHHHHHHHHHc----CCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-----CCH
Q 048269          214 VVDKMIETFFKI-NKDDEAMKVFQMMRVK----RMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIE-----ADN  283 (465)
Q Consensus       214 ~~~~li~~~~~~-g~~~~A~~~~~~m~~~----~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-----~~~  283 (465)
                      ++..+...|-.. |+++.|.+.|++..+.    +....-..++..+...+.+.|++++|.++|++....-..     .+.
T Consensus       116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~  195 (282)
T PF14938_consen  116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA  195 (282)
T ss_dssp             HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence            445556667777 8999999988876542    211101345677888899999999999999998765322     122


Q ss_pred             H-HHHHHHHHHHhcCCHHHHHHHHHHhcC--C---C---HhhHHHHHHHHHhc--CCHHHHHHHHHHHHHcCCCCCHHHH
Q 048269          284 L-TLSSIIYGLLARGRLREAYKVVEEIEK--P---D---ISLYHGLIKGLLRL--RRAREATQVFREMIKRGCEPTMHTY  352 (465)
Q Consensus       284 ~-~~~~li~~~~~~~~~~~a~~~~~~~~~--~---~---~~~~~~li~~~~~~--~~~~~a~~~~~~m~~~~~~p~~~~~  352 (465)
                      . .+...+-++...|+...|.+.+++...  |   +   ......|+.+|-..  ..++.++.-|+.+.    +.|..--
T Consensus       196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~----~ld~w~~  271 (282)
T PF14938_consen  196 KEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS----RLDNWKT  271 (282)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS-------HHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC----ccHHHHH
Confidence            2 223344466778999999999999876  2   2   23345566666542  34666666666553    3455444


Q ss_pred             HHHH
Q 048269          353 IMLL  356 (465)
Q Consensus       353 ~~ll  356 (465)
                      ..|+
T Consensus       272 ~~l~  275 (282)
T PF14938_consen  272 KMLL  275 (282)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4443

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.57  E-value=0.0022  Score=52.18  Aligned_cols=80  Identities=9%  Similarity=-0.146  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC--CHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHH
Q 048269          109 KTFKIALMTLAEVRELKKMVNFFHIMNDCGCEY--SLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKG  186 (465)
Q Consensus       109 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~  186 (465)
                      ..+..+...+...|++++|+..|+........+  ...++..+..++...|+.++|+..+++.....+....++..+...
T Consensus        36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i  115 (168)
T CHL00033         36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVI  115 (168)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence            345555556666666666666666665432111  123555566666666666666666666553223334444444444


Q ss_pred             HH
Q 048269          187 YC  188 (465)
Q Consensus       187 ~~  188 (465)
                      +.
T Consensus       116 ~~  117 (168)
T CHL00033        116 CH  117 (168)
T ss_pred             HH
Confidence            44

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.52  E-value=0.00045  Score=48.60  Aligned_cols=79  Identities=18%  Similarity=0.190  Sum_probs=33.6

Q ss_pred             CCHHHHHHHHHHHHHcCCC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048269          226 NKDDEAMKVFQMMRVKRMD-DLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYK  304 (465)
Q Consensus       226 g~~~~A~~~~~~m~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~  304 (465)
                      |+++.|+.+++.+.+.... + +...+..+..+|.+.|++++|..+++. .+.+.. +....-.+..+|.+.|++++|++
T Consensus         3 ~~y~~Ai~~~~k~~~~~~~~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    3 GNYENAIKYYEKLLELDPTNP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             T-HHHHHHHHHHHHHHHCGTH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             ccHHHHHHHHHHHHHHCCCCh-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHH
Confidence            4555555555555544211 1 222333345555555555555555554 111111 11222233444555555555555


Q ss_pred             HHH
Q 048269          305 VVE  307 (465)
Q Consensus       305 ~~~  307 (465)
                      .++
T Consensus        80 ~l~   82 (84)
T PF12895_consen   80 ALE   82 (84)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            544

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.52  E-value=0.037  Score=46.68  Aligned_cols=155  Identities=13%  Similarity=0.029  Sum_probs=111.7

Q ss_pred             HHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh-cCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 048269          125 KKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLS-EWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLM  203 (465)
Q Consensus       125 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  203 (465)
                      +..++.|+.-.       ..+-+.++.++...|.+.-...++.++. ...+.++.....|++.-.+.||.+.|...|++.
T Consensus       166 ESsv~lW~KRl-------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~v  238 (366)
T KOG2796|consen  166 ESSIRLWRKRL-------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDV  238 (366)
T ss_pred             hhHHHHHHHHH-------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence            55555555433       2345667777778888888889999888 444678888899999999999999999999977


Q ss_pred             HHCCCCCcHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 048269          204 TDEGFEPSIDVV-----DKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRG  278 (465)
Q Consensus       204 ~~~g~~~~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~  278 (465)
                      .+..-..|..+.     ......|.-.+++..|...+.++...  .|.++...|.-.-+..-.|+..+|.+.++.|+.. 
T Consensus       239 ek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~--D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~-  315 (366)
T KOG2796|consen  239 EKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRM--DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ-  315 (366)
T ss_pred             HHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhcccc--CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc-
Confidence            664333444433     44445567778899999999888765  4436666666566666689999999999999876 


Q ss_pred             CCCCHHHHHHHH
Q 048269          279 IEADNLTLSSII  290 (465)
Q Consensus       279 ~~~~~~~~~~li  290 (465)
                       .|...+-++++
T Consensus       316 -~P~~~l~es~~  326 (366)
T KOG2796|consen  316 -DPRHYLHESVL  326 (366)
T ss_pred             -CCccchhhhHH
Confidence             44555544433

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.51  E-value=0.00048  Score=46.17  Aligned_cols=62  Identities=10%  Similarity=-0.013  Sum_probs=40.0

Q ss_pred             HhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHH
Q 048269           85 GKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNK  148 (465)
Q Consensus        85 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  148 (465)
                      ...|++++|+++|+.+....+.+..++..+..++.+.|++++|..+++.+...  .|+...|..
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~   63 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQ   63 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHH
Confidence            35667777777777777666666666667777777777777777777777664  344333333

...

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.48  E-value=0.0035  Score=50.97  Aligned_cols=95  Identities=9%  Similarity=-0.013  Sum_probs=70.3

Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCC---ChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHH
Q 048269           73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLV---NDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKV  149 (465)
Q Consensus        73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  149 (465)
                      ....|..+...+...|++++|+..|+........   ...++..+...+...|++++|+..++...... +.....+..+
T Consensus        34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~l  112 (168)
T CHL00033         34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNM  112 (168)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHH
Confidence            4666788888888999999999999999765432   23578889999999999999999999988753 3345556666


Q ss_pred             HHHHH-------cCCCHHHHHHHHHH
Q 048269          150 VKTLC-------QRKLVVEAKYLILK  168 (465)
Q Consensus       150 l~~~~-------~~~~~~~a~~~~~~  168 (465)
                      ...+.       ..|+++.|...+++
T Consensus       113 a~i~~~~~~~~~~~g~~~~A~~~~~~  138 (168)
T CHL00033        113 AVICHYRGEQAIEQGDSEIAEAWFDQ  138 (168)
T ss_pred             HHHHHHhhHHHHHcccHHHHHHHHHH
Confidence            66666       55565544444443

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.48  E-value=0.00089  Score=54.69  Aligned_cols=51  Identities=14%  Similarity=0.197  Sum_probs=37.8

Q ss_pred             CCCHHhHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHh
Q 048269          174 KPNEIAYGWLIKGYCDV-----GDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFK  224 (465)
Q Consensus       174 ~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~  224 (465)
                      ..|..+|..++..|.+.     |..+-....+..|.+-|+.-|..+|+.|++.+=+
T Consensus        44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK   99 (228)
T PF06239_consen   44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK   99 (228)
T ss_pred             cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC
Confidence            45667777777777643     6777777788888888888888888888877654

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.48  E-value=0.01  Score=57.16  Aligned_cols=144  Identities=11%  Similarity=0.009  Sum_probs=97.0

Q ss_pred             CCCCCHHhHHHHHHHHHhc-----CChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhc--------CCHHHHHHHHHHhh
Q 048269           69 CFAHNSITFNRMVDIIGKS-----RNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEV--------RELKKMVNFFHIMN  135 (465)
Q Consensus        69 ~~~~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~a~~~~~~~~  135 (465)
                      ..+.|...|...+++....     ++...|..+|++..+.++.....+..+..++...        .+...+.+..+...
T Consensus       332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~  411 (517)
T PRK10153        332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV  411 (517)
T ss_pred             cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence            3445778888777765443     2366888899998888876666666654444332        12334444444433


Q ss_pred             hC-CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHH
Q 048269          136 DC-GCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDV  214 (465)
Q Consensus       136 ~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~  214 (465)
                      .. ..+.+...|..+.-.+...|++++|...+++...- .|+...|..+...+...|+.++|...+++....  .|...+
T Consensus       412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L-~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~pt  488 (517)
T PRK10153        412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL-EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGENT  488 (517)
T ss_pred             hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCch
Confidence            32 12445567777766666778999999999998732 357888889999999999999999999888765  344444


Q ss_pred             H
Q 048269          215 V  215 (465)
Q Consensus       215 ~  215 (465)
                      |
T Consensus       489 ~  489 (517)
T PRK10153        489 L  489 (517)
T ss_pred             H
Confidence            4

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.46  E-value=0.044  Score=49.35  Aligned_cols=255  Identities=15%  Similarity=0.064  Sum_probs=131.8

Q ss_pred             HHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHH
Q 048269           82 DIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVE  161 (465)
Q Consensus        82 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~  161 (465)
                      ..+.+..++..|+..+....+..+.+..-|.--+..+...+++++++--.+.-.+.. +-....+.-.-+++...++..+
T Consensus        57 n~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~~~i~  135 (486)
T KOG0550|consen   57 NAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALSDLIE  135 (486)
T ss_pred             chHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhHHHHH
Confidence            345566677778888888877777666666666666777777777766655444422 1111122222333333333333


Q ss_pred             HHHHHH---------------Hhh--cCCCCCHHhHHHHH-HHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHH--H
Q 048269          162 AKYLIL---------------KLS--EWIKPNEIAYGWLI-KGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIE--T  221 (465)
Q Consensus       162 a~~~~~---------------~m~--~~~~~~~~~~~~li-~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~--~  221 (465)
                      |...++               .+.  ..-+|...+|..|- .++.-.|+.++|.+.-....+..   ....+...++  +
T Consensus       136 A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~~  212 (486)
T KOG0550|consen  136 AEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGLC  212 (486)
T ss_pred             HHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc---cchhHHHHhcccc
Confidence            333322               111  11123333443332 33445577777777666655542   1122223333  3


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCCCcchHH---HHHHH----------HHhcCChHHHHHHHHHHHHC---CCCCCHHH
Q 048269          222 FFKINKDDEAMKVFQMMRVKRMDDLGLSTYR---IVIDW----------MCKRGKISQAYTMLEEMFKR---GIEADNLT  285 (465)
Q Consensus       222 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~---~li~~----------~~~~~~~~~a~~~~~~m~~~---~~~~~~~~  285 (465)
                      +.-.++.+.|...|++.+..  .| +...-.   .....          ..+.|.+..|.+.|.+.+..   ++.++...
T Consensus       213 ~yy~~~~~ka~~hf~qal~l--dp-dh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~nakl  289 (486)
T KOG0550|consen  213 LYYNDNADKAINHFQQALRL--DP-DHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKL  289 (486)
T ss_pred             cccccchHHHHHHHhhhhcc--Ch-hhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHH
Confidence            33456777777777776644  33 222211   11111          23556667777777666543   23445555


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHhcCCCHhhHHH-HH--HHHHhcCCHHHHHHHHHHHHHc
Q 048269          286 LSSIIYGLLARGRLREAYKVVEEIEKPDISLYHG-LI--KGLLRLRRAREATQVFREMIKR  343 (465)
Q Consensus       286 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-li--~~~~~~~~~~~a~~~~~~m~~~  343 (465)
                      |........+.|+..+|+.--+....-|..-.-+ +.  .++...++|++|.+-|+...+.
T Consensus       290 Y~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~  350 (486)
T KOG0550|consen  290 YGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL  350 (486)
T ss_pred             HHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            5555556666677777777666666644332222 22  2344456666666666666544

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.46  E-value=0.029  Score=48.46  Aligned_cols=54  Identities=19%  Similarity=0.191  Sum_probs=35.8

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHhcC--CCH----hhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048269          288 SIIYGLLARGRLREAYKVVEEIEK--PDI----SLYHGLIKGLLRLRRAREATQVFREMI  341 (465)
Q Consensus       288 ~li~~~~~~~~~~~a~~~~~~~~~--~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~  341 (465)
                      .+...|.+.|.+..|..-++.+.+  |+.    .....++.+|...|..++|..+...+.
T Consensus       180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~  239 (243)
T PRK10866        180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA  239 (243)
T ss_pred             HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence            345567777777777777777766  333    334456677777788777777666553

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.43  E-value=0.024  Score=45.14  Aligned_cols=130  Identities=15%  Similarity=0.081  Sum_probs=67.9

Q ss_pred             CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHH
Q 048269          175 PNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIV  254 (465)
Q Consensus       175 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l  254 (465)
                      |++..--.|..+....|+..+|...|.+....-+--|......+.++....+++..|...++++.+....-.++.+.-.+
T Consensus        87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~  166 (251)
T COG4700          87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF  166 (251)
T ss_pred             hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence            44444445555555666666666666655544334455555555555566666666666666555443211233344455


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048269          255 IDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVV  306 (465)
Q Consensus       255 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~  306 (465)
                      .+.+...|.+.+|..-|+.....  -|+...-......+.+.|+.+++..-+
T Consensus       167 aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~  216 (251)
T COG4700         167 ARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQY  216 (251)
T ss_pred             HHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHH
Confidence            55666666666666666665554  334333333334445555555544333

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.42  E-value=0.017  Score=55.66  Aligned_cols=135  Identities=11%  Similarity=-0.054  Sum_probs=73.4

Q ss_pred             CCCHHHHHHHHHHHHcC-----CCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhc--------CCHHHHHHHHHHHHHC
Q 048269          140 EYSLEMLNKVVKTLCQR-----KLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDV--------GDLIEASKIWNLMTDE  206 (465)
Q Consensus       140 ~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~--------g~~~~a~~~~~~m~~~  206 (465)
                      +.+...|...+++....     ++...|..+|++.....+-+...|..+..++...        .++..+.+........
T Consensus       334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al  413 (517)
T PRK10153        334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL  413 (517)
T ss_pred             CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc
Confidence            45566666666553321     2255666666666643344444454443333221        1122333333332221


Q ss_pred             -CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 048269          207 -GFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKR  277 (465)
Q Consensus       207 -g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  277 (465)
                       ....+...|.++.-.+...|++++|...+++....  .| +...|..+...+...|+.++|...+++....
T Consensus       414 ~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L  482 (517)
T PRK10153        414 PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNL  482 (517)
T ss_pred             ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence             12334456666655555667777777777777655  34 5666777777777777777777777766654

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.41  E-value=0.053  Score=45.52  Aligned_cols=181  Identities=10%  Similarity=-0.021  Sum_probs=96.1

Q ss_pred             HHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCC---ChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH--HHHHH
Q 048269           74 SITFNRMVDIIGKSRNIDLFWETLQEMGRRRLV---NDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSL--EMLNK  148 (465)
Q Consensus        74 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~  148 (465)
                      ...+-.....+...|++++|.+.|+.+....+.   ...+.-.++.++.+.|+++.|...++...+.-  |+.  ..+..
T Consensus         5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y--P~~~~~~~A~   82 (203)
T PF13525_consen    5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY--PNSPKADYAL   82 (203)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCcchhhHH
Confidence            344445566777888899999999888876542   34566777888888889999988888877642  222  11222


Q ss_pred             HHHHHHcCCCHHHHHHHHHHhhcC---CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhc
Q 048269          149 VVKTLCQRKLVVEAKYLILKLSEW---IKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKI  225 (465)
Q Consensus       149 ll~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~  225 (465)
                      .+.+.+.........    .....   ...-...+..++.-|-.+.-..+|...+..+.+.   . ...-..+...|.+.
T Consensus        83 Y~~g~~~~~~~~~~~----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~---l-a~~e~~ia~~Y~~~  154 (203)
T PF13525_consen   83 YMLGLSYYKQIPGIL----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR---L-AEHELYIARFYYKR  154 (203)
T ss_dssp             HHHHHHHHHHHHHHH-----TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH---H-HHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHhCccch----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHc
Confidence            222222111111110    00000   0000123445555555555566666655555432   1 11122356667888


Q ss_pred             CCHHHHHHHHHHHHHcCCCCCCc----chHHHHHHHHHhcCChHHH
Q 048269          226 NKDDEAMKVFQMMRVKRMDDLGL----STYRIVIDWMCKRGKISQA  267 (465)
Q Consensus       226 g~~~~A~~~~~~m~~~~~~~~~~----~~~~~li~~~~~~~~~~~a  267 (465)
                      |.+..|..-++.+.+.  -| ++    .....++.+|.+.|..+.+
T Consensus       155 ~~y~aA~~r~~~v~~~--yp-~t~~~~~al~~l~~~y~~l~~~~~a  197 (203)
T PF13525_consen  155 GKYKAAIIRFQYVIEN--YP-DTPAAEEALARLAEAYYKLGLKQAA  197 (203)
T ss_dssp             T-HHHHHHHHHHHHHH--ST-TSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred             ccHHHHHHHHHHHHHH--CC-CCchHHHHHHHHHHHHHHhCChHHH
Confidence            8888888888887766  44 32    2345666777777776643

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.40  E-value=0.01  Score=51.30  Aligned_cols=128  Identities=15%  Similarity=0.159  Sum_probs=98.0

Q ss_pred             hhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcC---CCHHHHHHHH
Q 048269           90 IDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQR---KLVVEAKYLI  166 (465)
Q Consensus        90 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---~~~~~a~~~~  166 (465)
                      ++....-++.-.+.++.+...|-.|...|...|++..|...|....+.. .++...+..+..++..+   ....++..+|
T Consensus       138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll  216 (287)
T COG4235         138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALL  216 (287)
T ss_pred             HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence            3444455666677788888899999999999999999999999888754 56677776666665443   3467888999


Q ss_pred             HHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHH
Q 048269          167 LKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIE  220 (465)
Q Consensus       167 ~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~  220 (465)
                      +++....+-|+.+...|...+...|++.+|...|+.|.+..  |....+..+|.
T Consensus       217 ~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie  268 (287)
T COG4235         217 RQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIE  268 (287)
T ss_pred             HHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHH
Confidence            99887677888888888899999999999999999998863  44444445544

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.39  E-value=0.01  Score=51.28  Aligned_cols=114  Identities=11%  Similarity=-0.047  Sum_probs=88.8

Q ss_pred             CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCcHHHHH
Q 048269          140 EYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDV---GDLIEASKIWNLMTDEGFEPSIDVVD  216 (465)
Q Consensus       140 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~g~~~~~~~~~  216 (465)
                      +-|...|-.|...|...|+.+.|...|.+...-.++|...+..+..++...   .+..++..+|+++.... +-|..+..
T Consensus       153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~  231 (287)
T COG4235         153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALS  231 (287)
T ss_pred             CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHH
Confidence            678999999999999999999999999998844466666666666655443   34578999999998863 33667777


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHH
Q 048269          217 KMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDW  257 (465)
Q Consensus       217 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~  257 (465)
                      .|...+...|++.+|...|+.|.+.  .| ....+..+|..
T Consensus       232 lLA~~afe~g~~~~A~~~Wq~lL~~--lp-~~~~rr~~ie~  269 (287)
T COG4235         232 LLAFAAFEQGDYAEAAAAWQMLLDL--LP-ADDPRRSLIER  269 (287)
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHhc--CC-CCCchHHHHHH
Confidence            7888899999999999999999976  44 33455555554

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.39  E-value=0.00088  Score=44.36  Aligned_cols=58  Identities=5%  Similarity=0.066  Sum_probs=41.6

Q ss_pred             HHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 048269           80 MVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDC  137 (465)
Q Consensus        80 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  137 (465)
                      +...+.+.|++++|...|+.+.+..+.+...+..+..++.+.|++++|...|+.+.+.
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~   60 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL   60 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            3456677777777777777777777666677777777777777777777777777654

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.38  E-value=0.0018  Score=57.73  Aligned_cols=135  Identities=7%  Similarity=-0.123  Sum_probs=89.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHhcC---------CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 048269          284 LTLSSIIYGLLARGRLREAYKVVEEIEK---------PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIM  354 (465)
Q Consensus       284 ~~~~~li~~~~~~~~~~~a~~~~~~~~~---------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~  354 (465)
                      ..|..|-+.|.-.|+++.|+..-+.=..         ..-..+..+..+++-.|+++.|.+.|+.-....+.....+.. 
T Consensus       196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vE-  274 (639)
T KOG1130|consen  196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVE-  274 (639)
T ss_pred             chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHH-
Confidence            3456666667777888888765543222         334556777788888899999998888765332222222211 


Q ss_pred             HHHHhhcccCCCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CC-CCCCHhhHHHHHHHHhhccchHHHHHH
Q 048269          355 LLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMN----RG-VEVPRFDYNKFLHYYSNEEGVVMFEEV  429 (465)
Q Consensus       355 ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~-~~p~~~~~~~ll~~~~~~g~~~~a~~~  429 (465)
                                       ..+.-+|...|.-..++++|+.++.+-..    .+ ..-....+.+|..++...|..++|..+
T Consensus       275 -----------------AQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~f  337 (639)
T KOG1130|consen  275 -----------------AQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYF  337 (639)
T ss_pred             -----------------HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHH
Confidence                             11223567777888889999988876543    11 223445888999999999999999988


Q ss_pred             HHHHHHc
Q 048269          430 GKKLREV  436 (465)
Q Consensus       430 ~~~~~~~  436 (465)
                      .+.-++.
T Consensus       338 ae~hl~~  344 (639)
T KOG1130|consen  338 AELHLRS  344 (639)
T ss_pred             HHHHHHH
Confidence            8877665

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.33  E-value=0.019  Score=43.10  Aligned_cols=89  Identities=8%  Similarity=-0.096  Sum_probs=42.8

Q ss_pred             HHHHHHhcCChhHHHHHHHHHhhCCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC----HHHHHHHHHH
Q 048269           80 MVDIIGKSRNIDLFWETLQEMGRRRLVN---DKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYS----LEMLNKVVKT  152 (465)
Q Consensus        80 l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~  152 (465)
                      +..++-..|+.++|+.+|++....|...   ...+-.+...+...|++++|+.+|+......  |+    ......+..+
T Consensus         7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~   84 (120)
T PF12688_consen    7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALA   84 (120)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHH
Confidence            3444555556666666666655555432   2244445555555566666666555554431  22    1111122234


Q ss_pred             HHcCCCHHHHHHHHHHhh
Q 048269          153 LCQRKLVVEAKYLILKLS  170 (465)
Q Consensus       153 ~~~~~~~~~a~~~~~~m~  170 (465)
                      +...|+.++|++.+-...
T Consensus        85 L~~~gr~~eAl~~~l~~l  102 (120)
T PF12688_consen   85 LYNLGRPKEALEWLLEAL  102 (120)
T ss_pred             HHHCCCHHHHHHHHHHHH
Confidence            445555555555554433

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.32  E-value=0.11  Score=46.63  Aligned_cols=23  Identities=9%  Similarity=0.068  Sum_probs=13.8

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHH
Q 048269           76 TFNRMVDIIGKSRNIDLFWETLQ   98 (465)
Q Consensus        76 ~~~~l~~~~~~~g~~~~a~~~~~   98 (465)
                      +|..+.....+.|+.+-|..+++
T Consensus         2 S~a~IA~~A~~~GR~~LA~~LL~   24 (319)
T PF04840_consen    2 SYAEIARKAYEEGRPKLATKLLE   24 (319)
T ss_pred             CHHHHHHHHHHcChHHHHHHHHH
Confidence            35555666666666666666554

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.31  E-value=0.0011  Score=44.58  Aligned_cols=64  Identities=8%  Similarity=0.040  Sum_probs=45.7

Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcC-CHHHHHHHHHHhhh
Q 048269           73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVR-ELKKMVNFFHIMND  136 (465)
Q Consensus        73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~  136 (465)
                      ++..|..+...+.+.|++++|+..|++..+.++.+..+|..+..++.+.| ++++|++.++...+
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~   66 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK   66 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence            45667777777777777777777777777776666667777777777777 57777777776654

...

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=97.31  E-value=0.12  Score=46.41  Aligned_cols=317  Identities=11%  Similarity=0.059  Sum_probs=207.0

Q ss_pred             HHHHhcCCCChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHh--cCChhHHHHHHHHHhhCCCCChHHHHHHH--HHH
Q 048269           43 LQICNNFPLSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGK--SRNIDLFWETLQEMGRRRLVNDKTFKIAL--MTL  118 (465)
Q Consensus        43 ~~~l~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~l~--~~~  118 (465)
                      -.++..+-.+|..+.+.|... +++.|       |..|-..+.-  .|+-..|.++-.+..+.=..+....-.++  ++-
T Consensus        59 wwlv~~iw~sP~t~~Ryfr~r-KRdrg-------yqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaa  130 (531)
T COG3898          59 WWLVRSIWESPYTARRYFRER-KRDRG-------YQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAA  130 (531)
T ss_pred             HHHHHHHHhCcHHHHHHHHHH-HhhhH-------HHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHH
Confidence            344555666888999999987 77777       5566555544  47777887777654322112323333333  344


Q ss_pred             HhcCCHHHHHHHHHHhhhCCCCCCHHH--HHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHH
Q 048269          119 AEVRELKKMVNFFHIMNDCGCEYSLEM--LNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEA  196 (465)
Q Consensus       119 ~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a  196 (465)
                      .-.|+++.|.+-|+.|..   .|....  ...|.-..-+.|+.+.|.++-++.-..-+.-...+...+...|..|+|+.|
T Consensus       131 l~eG~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~A  207 (531)
T COG3898         131 LLEGDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGA  207 (531)
T ss_pred             HhcCchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHH
Confidence            567999999999999987   233322  223333345689999999998887744455678899999999999999999


Q ss_pred             HHHHHHHHHCC-CCCcHH--HHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCCc-chHHHHHHHHHhcCChHHHHH
Q 048269          197 SKIWNLMTDEG-FEPSID--VVDKMIETFFK---INKDDEAMKVFQMMRVKRMDDLGL-STYRIVIDWMCKRGKISQAYT  269 (465)
Q Consensus       197 ~~~~~~m~~~g-~~~~~~--~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~  269 (465)
                      +++++.-++.. +.++..  .-..|+.+-..   ..+...|.+.-.+..+  +.| +. ..-..-..++.+.|+..++-.
T Consensus       208 lkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~p-dlvPaav~AAralf~d~~~rKg~~  284 (531)
T COG3898         208 LKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAP-DLVPAAVVAARALFRDGNLRKGSK  284 (531)
T ss_pred             HHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCC-ccchHHHHHHHHHHhccchhhhhh
Confidence            99999887643 233332  12223322111   2345556665555443  355 32 234455678999999999999


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH----HHHHHHhcCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 048269          270 MLEEMFKRGIEADNLTLSSIIYGLLARGRLREA----YKVVEEIEKPDISLYHGLIKGLLRLRRAREATQVFREMIKRGC  345 (465)
Q Consensus       270 ~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a----~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~  345 (465)
                      +++.+-+....|+.  ..  +..+.+.|+....    .+-+..|+..+..+.-.+..+-...|++..|..--+...  ..
T Consensus       285 ilE~aWK~ePHP~i--a~--lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~--r~  358 (531)
T COG3898         285 ILETAWKAEPHPDI--AL--LYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA--RE  358 (531)
T ss_pred             HHHHHHhcCCChHH--HH--HHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh--hh
Confidence            99999888555543  22  2234555553222    123445555777788888888888999988877666555  34


Q ss_pred             CCCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048269          346 EPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNR  401 (465)
Q Consensus       346 ~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  401 (465)
                      .|....|..+-..-                      -...||-.++...+.+....
T Consensus       359 ~pres~~lLlAdIe----------------------eAetGDqg~vR~wlAqav~A  392 (531)
T COG3898         359 APRESAYLLLADIE----------------------EAETGDQGKVRQWLAQAVKA  392 (531)
T ss_pred             CchhhHHHHHHHHH----------------------hhccCchHHHHHHHHHHhcC
Confidence            67777776655543                      15669999999999888753

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.29  E-value=0.024  Score=42.57  Aligned_cols=90  Identities=13%  Similarity=0.087  Sum_probs=47.7

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---CcchHHHHHHHH
Q 048269          184 IKGYCDVGDLIEASKIWNLMTDEGFEPS--IDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDL---GLSTYRIVIDWM  258 (465)
Q Consensus       184 i~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~~li~~~  258 (465)
                      ..++-..|+.++|+.+|+.....|+...  ...+-.+.+.+...|++++|..++++....  .|.   +......+..++
T Consensus         8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~Al~L   85 (120)
T PF12688_consen    8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFLALAL   85 (120)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHH
Confidence            3445555666666666666666665433  234445556666666666666666666544  221   111222223344


Q ss_pred             HhcCChHHHHHHHHHHH
Q 048269          259 CKRGKISQAYTMLEEMF  275 (465)
Q Consensus       259 ~~~~~~~~a~~~~~~m~  275 (465)
                      ...|+.++|...+-...
T Consensus        86 ~~~gr~~eAl~~~l~~l  102 (120)
T PF12688_consen   86 YNLGRPKEALEWLLEAL  102 (120)
T ss_pred             HHCCCHHHHHHHHHHHH
Confidence            55566666666554443

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.28  E-value=0.13  Score=46.33  Aligned_cols=113  Identities=19%  Similarity=0.247  Sum_probs=75.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc
Q 048269          283 NLTLSSIIYGLLARGRLREAYKVVEEIEKPDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGK  362 (465)
Q Consensus       283 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~  362 (465)
                      ..+.+..+.-+...|+...|.++..+..-|+-..|...+.+++..++|++-.++-..    .  -++..|..++.+|   
T Consensus       177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s----k--KsPIGyepFv~~~---  247 (319)
T PF04840_consen  177 GLSLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS----K--KSPIGYEPFVEAC---  247 (319)
T ss_pred             cCCHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC----C--CCCCChHHHHHHH---
Confidence            345556667777888888888888888778888888889999999998876665332    1  1224444444444   


Q ss_pred             cCCCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhccchHHHHHHHHHHH
Q 048269          363 RGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNEEGVVMFEEVGKKLR  434 (465)
Q Consensus       363 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~  434 (465)
                                          .+.|...+|..+..++     .+     ..-+..|.+.|++.+|.+..-+..
T Consensus       248 --------------------~~~~~~~eA~~yI~k~-----~~-----~~rv~~y~~~~~~~~A~~~A~~~k  289 (319)
T PF04840_consen  248 --------------------LKYGNKKEASKYIPKI-----PD-----EERVEMYLKCGDYKEAAQEAFKEK  289 (319)
T ss_pred             --------------------HHCCCHHHHHHHHHhC-----Ch-----HHHHHHHHHCCCHHHHHHHHHHcC
Confidence                                7778888888777762     11     333455666777777666544433

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.27  E-value=0.0059  Score=52.42  Aligned_cols=101  Identities=12%  Similarity=0.052  Sum_probs=55.3

Q ss_pred             HHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHH
Q 048269          116 MTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIE  195 (465)
Q Consensus       116 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~  195 (465)
                      .-+.+.+++++|+..|.+.++.. +-|.+-|..-..+|++.|.++.|++-.+....-.+....+|..|..+|...|++++
T Consensus        89 N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~  167 (304)
T KOG0553|consen   89 NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE  167 (304)
T ss_pred             HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence            34455566666666666666543 33444455555566666666666655555443233344556666666666666666


Q ss_pred             HHHHHHHHHHCCCCCcHHHHHHHH
Q 048269          196 ASKIWNLMTDEGFEPSIDVVDKMI  219 (465)
Q Consensus       196 a~~~~~~m~~~g~~~~~~~~~~li  219 (465)
                      |++.|++..+.  .|+-.+|-.=+
T Consensus       168 A~~aykKaLel--dP~Ne~~K~nL  189 (304)
T KOG0553|consen  168 AIEAYKKALEL--DPDNESYKSNL  189 (304)
T ss_pred             HHHHHHhhhcc--CCCcHHHHHHH
Confidence            66666655543  45544443333

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.22  E-value=0.0024  Score=42.80  Aligned_cols=64  Identities=13%  Similarity=-0.034  Sum_probs=55.9

Q ss_pred             chHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHhhcc-chHHHHHHHHHHHHc
Q 048269          371 LVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVP-RFDYNKFLHYYSNEE-GVVMFEEVGKKLREV  436 (465)
Q Consensus       371 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~  436 (465)
                      ++..|..+...+...|++++|+..|++.++.  .|+ ...|..+..++...| ++++|.+.+++.++.
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l   67 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL   67 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence            4567888999999999999999999999984  564 458999999999999 899999999998865

...

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=97.21  E-value=0.19  Score=48.16  Aligned_cols=221  Identities=12%  Similarity=0.070  Sum_probs=107.8

Q ss_pred             CCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCC------------CChHHHHHHHHHHHhcCC--HHHHHHHHHHhhh
Q 048269           71 AHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRL------------VNDKTFKIALMTLAEVRE--LKKMVNFFHIMND  136 (465)
Q Consensus        71 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~------------~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~  136 (465)
                      .+.+..+.+-+..|...|.+++|.++--    .|+            ...--++..-.+|.+.++  +-+.+.-++++++
T Consensus       553 ~~~evp~~~~m~q~Ieag~f~ea~~iac----lgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~  628 (1081)
T KOG1538|consen  553 SAVEVPQSAPMYQYIERGLFKEAYQIAC----LGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKK  628 (1081)
T ss_pred             ecccccccccchhhhhccchhhhhcccc----cceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            3444455555566666777666654321    111            011124444455655544  3344555667777


Q ss_pred             CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh-cCCCCCHHhHH-----HHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 048269          137 CGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLS-EWIKPNEIAYG-----WLIKGYCDVGDLIEASKIWNLMTDEGFEP  210 (465)
Q Consensus       137 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~-~~~~~~~~~~~-----~li~~~~~~g~~~~a~~~~~~m~~~g~~~  210 (465)
                      +|-.|+...   +...++-.|.+.+|-++|.+-- ++-.  ...|+     -+..-|...|+.++-..+.++-.+..  -
T Consensus       629 rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~enRA--lEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WA--r  701 (1081)
T KOG1538|consen  629 RGETPNDLL---LADVFAYQGKFHEAAKLFKRSGHENRA--LEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWA--R  701 (1081)
T ss_pred             cCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCchhhH--HHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHh--h
Confidence            886677654   3344566677777777776543 1000  00011     11222333343333333322221110  0


Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHH------HHH--cCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 048269          211 SIDVVDKMIETFFKINKDDEAMKVFQM------MRV--KRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEAD  282 (465)
Q Consensus       211 ~~~~~~~li~~~~~~g~~~~A~~~~~~------m~~--~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~  282 (465)
                      +..--.+....+...|+.++|..+..+      +.+  ..+...+..+...+..-+.+...+.-|.++|.+|-..     
T Consensus       702 ~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~-----  776 (1081)
T KOG1538|consen  702 NIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL-----  776 (1081)
T ss_pred             hcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH-----
Confidence            000012334445556666666654321      111  1111113344445555555566666777777766432     


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHhcC
Q 048269          283 NLTLSSIIYGLLARGRLREAYKVVEEIEK  311 (465)
Q Consensus       283 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~  311 (465)
                          ..++......+++++|..+-+..++
T Consensus       777 ----ksiVqlHve~~~W~eAFalAe~hPe  801 (1081)
T KOG1538|consen  777 ----KSLVQLHVETQRWDEAFALAEKHPE  801 (1081)
T ss_pred             ----HHHhhheeecccchHhHhhhhhCcc
Confidence                3456667778888888888887777

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.20  E-value=0.0045  Score=53.10  Aligned_cols=88  Identities=9%  Similarity=-0.084  Sum_probs=55.4

Q ss_pred             HHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHH
Q 048269           82 DIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVE  161 (465)
Q Consensus        82 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~  161 (465)
                      .-+.+.+++.+|+..|.+.++..+.++..|..-..+|.+.|.++.|++-.+.....+ +-...+|..|..+|...|++++
T Consensus        89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~  167 (304)
T KOG0553|consen   89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEE  167 (304)
T ss_pred             HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHH
Confidence            344556666666666666666666666666666666666666666666666655543 3345566666666666666666


Q ss_pred             HHHHHHHhh
Q 048269          162 AKYLILKLS  170 (465)
Q Consensus       162 a~~~~~~m~  170 (465)
                      |++.|++..
T Consensus       168 A~~aykKaL  176 (304)
T KOG0553|consen  168 AIEAYKKAL  176 (304)
T ss_pred             HHHHHHhhh
Confidence            666666655

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.19  E-value=0.0011  Score=44.34  Aligned_cols=22  Identities=18%  Similarity=0.166  Sum_probs=8.2

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHh
Q 048269          148 KVVKTLCQRKLVVEAKYLILKL  169 (465)
Q Consensus       148 ~ll~~~~~~~~~~~a~~~~~~m  169 (465)
                      .+..+|.+.|++++|..+++++
T Consensus        30 ~la~~~~~~g~~~~A~~~l~~~   51 (68)
T PF14559_consen   30 LLAQCYLKQGQYDEAEELLERL   51 (68)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHCC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHH
Confidence            3333333333333333333333

...

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.16  E-value=0.14  Score=46.62  Aligned_cols=31  Identities=16%  Similarity=0.154  Sum_probs=22.0

Q ss_pred             CcchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 048269          247 GLSTYRIVIDWMCKRGKISQAYTMLEEMFKR  277 (465)
Q Consensus       247 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  277 (465)
                      +-..+.+++.++.-.|+.++|.+..++|.+.
T Consensus       304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l  334 (374)
T PF13281_consen  304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL  334 (374)
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence            3345667777777777777777777777765

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=97.15  E-value=0.2  Score=45.95  Aligned_cols=375  Identities=11%  Similarity=0.072  Sum_probs=197.1

Q ss_pred             ChhHHHHHHHHHhhcCCC--CCCC-HHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHH--HHHhcCCHHH
Q 048269           52 SWRPVYLFFQYTQKAQPC--FAHN-SITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALM--TLAEVRELKK  126 (465)
Q Consensus        52 ~~~~a~~~f~~~~~~~~~--~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~  126 (465)
                      +...|..+|..+......  +... ...-+.++++|... +.+.....+....+....+.  |-.+..  .+.+.+.+.+
T Consensus        21 ~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~~~s~--~l~LF~~L~~Y~~k~~~k   97 (549)
T PF07079_consen   21 KFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQFGKSA--YLPLFKALVAYKQKEYRK   97 (549)
T ss_pred             hhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhcCCch--HHHHHHHHHHHHhhhHHH
Confidence            667899999987322211  1111 22234566666543 56666666666655544332  333333  3467788999


Q ss_pred             HHHHHHHhhhC--CCCCCH------------HHHHHHHHHHHcCCCHHHHHHHHHHhh-c----CCCCCHHhHHHHHHHH
Q 048269          127 MVNFFHIMNDC--GCEYSL------------EMLNKVVKTLCQRKLVVEAKYLILKLS-E----WIKPNEIAYGWLIKGY  187 (465)
Q Consensus       127 a~~~~~~~~~~--~~~~~~------------~~~~~ll~~~~~~~~~~~a~~~~~~m~-~----~~~~~~~~~~~li~~~  187 (465)
                      |++.+....+.  +..+..            ..-+..++++...|++.+++.+++++. .    ...-+..+|+.++-.+
T Consensus        98 al~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlml  177 (549)
T PF07079_consen   98 ALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLML  177 (549)
T ss_pred             HHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHH
Confidence            99888877664  323211            112456778888999999999999887 2    2336888888866665


Q ss_pred             HhcCC---------------HHHHHHHHHHHHHC------CCCCcHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHcCCC
Q 048269          188 CDVGD---------------LIEASKIWNLMTDE------GFEPSIDVVDKMIETFFKI--NKDDEAMKVFQMMRVKRMD  244 (465)
Q Consensus       188 ~~~g~---------------~~~a~~~~~~m~~~------g~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~~~~  244 (465)
                      .+.=-               ++.+.-..+++...      .+.|.......++.-..-.  .+..--.+++......-+.
T Consensus       178 srSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~  257 (549)
T PF07079_consen  178 SRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVH  257 (549)
T ss_pred             hHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccC
Confidence            54311               11222222222211      1223333333333322211  1122223333333334444


Q ss_pred             CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHhcC--CCHhhHH
Q 048269          245 DLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEA----DNLTLSSIIYGLLARGRLREAYKVVEEIEK--PDISLYH  318 (465)
Q Consensus       245 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~  318 (465)
                      |...-....+...+.+  +.+++..+-+.+....+.+    =..++..++....+.++...|.+.+.-+..  |+...-.
T Consensus       258 p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~  335 (549)
T PF07079_consen  258 PNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSE  335 (549)
T ss_pred             CchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhh
Confidence            5223334444444444  6677777776665443211    234566777777888888888887776655  5544333


Q ss_pred             HH-------HHHHHhc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---hhcccC--------------------
Q 048269          319 GL-------IKGLLRL----RRAREATQVFREMIKRGCEPTMHTYIMLLQG---HLGKRG--------------------  364 (465)
Q Consensus       319 ~l-------i~~~~~~----~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~---~~~~~~--------------------  364 (465)
                      .+       -...+..    -+...-+.+|.+.....+.-.. -...++.+   +...++                    
T Consensus       336 Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQ-Lvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~  414 (549)
T PF07079_consen  336 KLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQ-LVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDI  414 (549)
T ss_pred             hhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHH-HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccH
Confidence            33       2233311    1122223333333322211000 00001100   000000                    


Q ss_pred             ----------------------------------CCCCCCch----HHHHHHHHH--HHhcCCHHHHHHHHHHHHhCCCC
Q 048269          365 ----------------------------------RKGPDPLV----NFDTIFVGG--LVKAGKSLDAAKYVERVMNRGVE  404 (465)
Q Consensus       365 ----------------------------------~~~~~~~~----~~~~~li~~--~~~~g~~~~A~~~~~~m~~~~~~  404 (465)
                                                        ..|++|-.    ..-|.|-++  +...|++.++.-.-.-+.+  +.
T Consensus       415 ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--ia  492 (549)
T PF07079_consen  415 ECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IA  492 (549)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hC
Confidence                                              55555532    344444433  5578888888766555554  78


Q ss_pred             CCHhhHHHHHHHHhhccchHHHHHHHHHHH
Q 048269          405 VPRFDYNKFLHYYSNEEGVVMFEEVGKKLR  434 (465)
Q Consensus       405 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~  434 (465)
                      |++.+|..+.-++....++++|..++.++-
T Consensus       493 PS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP  522 (549)
T PF07079_consen  493 PSPQAYRLLGLCLMENKRYQEAWEYLQKLP  522 (549)
T ss_pred             CcHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence            999999999999999999999999987653

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.13  E-value=0.0028  Score=41.92  Aligned_cols=25  Identities=20%  Similarity=0.053  Sum_probs=8.8

Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHH
Q 048269          178 IAYGWLIKGYCDVGDLIEASKIWNL  202 (465)
Q Consensus       178 ~~~~~li~~~~~~g~~~~a~~~~~~  202 (465)
                      ..+..+..++...|++++|..+|+.
T Consensus        32 ~a~~~lg~~~~~~g~~~~A~~~~~~   56 (65)
T PF13432_consen   32 EAWYLLGRILYQQGRYDEALAYYER   56 (65)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            3333333333333333333333333

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.08  E-value=0.1  Score=43.81  Aligned_cols=42  Identities=17%  Similarity=0.203  Sum_probs=20.2

Q ss_pred             HHHHHhcCCHHHHHHHHHHhcC--CCHhh----HHHHHHHHHhcCCHH
Q 048269          290 IYGLLARGRLREAYKVVEEIEK--PDISL----YHGLIKGLLRLRRAR  331 (465)
Q Consensus       290 i~~~~~~~~~~~a~~~~~~~~~--~~~~~----~~~li~~~~~~~~~~  331 (465)
                      ...|.+.|.+..|..-++.+.+  |++..    .-.++.+|.+.|..+
T Consensus       148 a~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~  195 (203)
T PF13525_consen  148 ARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ  195 (203)
T ss_dssp             HHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence            4445555555555555555554  33322    234455555555544

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.04  E-value=0.0072  Score=47.76  Aligned_cols=71  Identities=13%  Similarity=0.171  Sum_probs=45.8

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhh-----CCCCCCHHHH
Q 048269           76 TFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMND-----CGCEYSLEML  146 (465)
Q Consensus        76 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~  146 (465)
                      +...++..+...|++++|..+.+.+...++.+...|..+|.++...|+...|+++|+.+..     .|+.|+..+-
T Consensus        64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~  139 (146)
T PF03704_consen   64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR  139 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence            4455666666777777777777777777777777777777777777777777777776643     5666766553

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.03  E-value=0.018  Score=50.18  Aligned_cols=94  Identities=9%  Similarity=-0.005  Sum_probs=40.9

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHhhCCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC--CCCCHHHHHHHHH
Q 048269           77 FNRMVDIIGKSRNIDLFWETLQEMGRRRLVN---DKTFKIALMTLAEVRELKKMVNFFHIMNDCG--CEYSLEMLNKVVK  151 (465)
Q Consensus        77 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~  151 (465)
                      |...+..+.+.|++++|...|+.+.+..+.+   +.++..+...+...|++++|...|+.+.+.-  -+.....+-.+..
T Consensus       146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~  225 (263)
T PRK10803        146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV  225 (263)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence            3333333344455555555555555443322   2344445555555555555555555544321  0111222223333


Q ss_pred             HHHcCCCHHHHHHHHHHhh
Q 048269          152 TLCQRKLVVEAKYLILKLS  170 (465)
Q Consensus       152 ~~~~~~~~~~a~~~~~~m~  170 (465)
                      ++...|+.++|..+|+++.
T Consensus       226 ~~~~~g~~~~A~~~~~~vi  244 (263)
T PRK10803        226 IMQDKGDTAKAKAVYQQVI  244 (263)
T ss_pred             HHHHcCCHHHHHHHHHHHH
Confidence            4444455555555554444

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.01  E-value=0.015  Score=52.18  Aligned_cols=261  Identities=10%  Similarity=-0.031  Sum_probs=150.5

Q ss_pred             HHHHhcCChhHHHHHHHHHhhCCCCCh----HHHHHHHHHHHhcCCHHHHHHHHHHh--hh--CCC-CCCHHHHHHHHHH
Q 048269           82 DIIGKSRNIDLFWETLQEMGRRRLVND----KTFKIALMTLAEVRELKKMVNFFHIM--ND--CGC-EYSLEMLNKVVKT  152 (465)
Q Consensus        82 ~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~--~~--~~~-~~~~~~~~~ll~~  152 (465)
                      .-+++.|+....+.+|+...+.|..+.    .+|..+..+|.-.+++++|+++...=  ..  .|- .-.......|...
T Consensus        25 ERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt  104 (639)
T KOG1130|consen   25 ERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT  104 (639)
T ss_pred             HHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence            457888999999999999888887543    35667777888888888888865321  11  010 0011111223333


Q ss_pred             HHcCCCHHHHHHHHHHhh-----cCC-CCCHHhHHHHHHHHHhcCC--------------------HHHHHHHHHHHHH-
Q 048269          153 LCQRKLVVEAKYLILKLS-----EWI-KPNEIAYGWLIKGYCDVGD--------------------LIEASKIWNLMTD-  205 (465)
Q Consensus       153 ~~~~~~~~~a~~~~~~m~-----~~~-~~~~~~~~~li~~~~~~g~--------------------~~~a~~~~~~m~~-  205 (465)
                      +--.|.+++|+-.-.+-.     -|. ......+-.+...|...|+                    ++.|.++|.+=.+ 
T Consensus       105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l  184 (639)
T KOG1130|consen  105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL  184 (639)
T ss_pred             hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence            333455555543322211     000 0112233334444443332                    2334444433221 


Q ss_pred             ---CCCC-CcHHHHHHHHHHHHhcCCHHHHHHHHHHH----HHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHH-
Q 048269          206 ---EGFE-PSIDVVDKMIETFFKINKDDEAMKVFQMM----RVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFK-  276 (465)
Q Consensus       206 ---~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-  276 (465)
                         .|-. .-...|..|.+.|.-.|+++.|+..-+.-    .+-|-.......+..+..++.-.|+++.|.+.|+.... 
T Consensus       185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L  264 (639)
T KOG1130|consen  185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL  264 (639)
T ss_pred             HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence               1100 11234555666666678888887654432    22232222445778888899999999999988876542 


Q ss_pred             ---CC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC---------CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048269          277 ---RG-IEADNLTLSSIIYGLLARGRLREAYKVVEEIEK---------PDISLYHGLIKGLLRLRRAREATQVFREMIK  342 (465)
Q Consensus       277 ---~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  342 (465)
                         .| -.....+.-+|.+.|.-..++++|+..+.+-..         -....|-.|..+|...|..++|+.+...-++
T Consensus       265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~  343 (639)
T KOG1130|consen  265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR  343 (639)
T ss_pred             HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence               22 122455666778888888888888887775443         4456778888888888888888877665543

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=96.98  E-value=0.015  Score=44.14  Aligned_cols=100  Identities=14%  Similarity=0.079  Sum_probs=77.0

Q ss_pred             CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcCCHHHHH
Q 048269          313 DISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAA  392 (465)
Q Consensus       313 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~  392 (465)
                      |..++..+|.++++.|+.+....+++..-  |+.++...-..-      ........|+..+..+++.+|+..|++..|+
T Consensus         1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~~~~~------~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al   72 (126)
T PF12921_consen    1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKKKEGD------YPPSSPLYPTSRLLIAIVHSFGYNGDIFSAL   72 (126)
T ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCccccCc------cCCCCCCCCCHHHHHHHHHHHHhcccHHHHH
Confidence            45678889999999999998888887664  555443111000      2236778899999999999999999999999


Q ss_pred             HHHHHHHh-CCCCCCHhhHHHHHHHHhhc
Q 048269          393 KYVERVMN-RGVEVPRFDYNKFLHYYSNE  420 (465)
Q Consensus       393 ~~~~~m~~-~~~~p~~~~~~~ll~~~~~~  420 (465)
                      ++++...+ -++..+..+|..|++-+...
T Consensus        73 ~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~  101 (126)
T PF12921_consen   73 KLVDFFSRKYPIPIPKEFWRRLLEWAYVL  101 (126)
T ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence            99999987 45777788999999877654

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=96.96  E-value=0.26  Score=44.97  Aligned_cols=159  Identities=14%  Similarity=0.079  Sum_probs=84.0

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCC---CCCcHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCCcchHHHHH
Q 048269          182 WLIKGYCDVGDLIEASKIWNLMTDEG---FEPSIDVVDKMIETFFK---INKDDEAMKVFQMMRVKRMDDLGLSTYRIVI  255 (465)
Q Consensus       182 ~li~~~~~~g~~~~a~~~~~~m~~~g---~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li  255 (465)
                      .|+-.|....+++..+++++.+....   +.-+..+-....-++.+   .|+.++|++++..+......+ ++.+|..+.
T Consensus       146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~-~~d~~gL~G  224 (374)
T PF13281_consen  146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENP-DPDTLGLLG  224 (374)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCC-ChHHHHHHH
Confidence            34445666666777777766665531   11122222233344445   566677777766644444444 666666666


Q ss_pred             HHHHh---------cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH----HHHHHHH---HHhc--C------
Q 048269          256 DWMCK---------RGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRL----REAYKVV---EEIE--K------  311 (465)
Q Consensus       256 ~~~~~---------~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~----~~a~~~~---~~~~--~------  311 (465)
                      ..|-.         ....++|...|.+.-+.  .||.+.--.++..+.-.|..    .+..++-   ..+.  +      
T Consensus       225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~  302 (374)
T PF13281_consen  225 RIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM  302 (374)
T ss_pred             HHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence            55431         11255666666654433  23333322222222223321    1112222   1110  0      


Q ss_pred             CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048269          312 PDISLYHGLIKGLLRLRRAREATQVFREMIKR  343 (465)
Q Consensus       312 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  343 (465)
                      .+-.-+.+++.++.-.|+.++|.+.+++|.+.
T Consensus       303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l  334 (374)
T PF13281_consen  303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKL  334 (374)
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence            55566778888999999999999999999865

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=96.92  E-value=0.0069  Score=41.08  Aligned_cols=58  Identities=7%  Similarity=-0.024  Sum_probs=46.3

Q ss_pred             HHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 048269           81 VDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCG  138 (465)
Q Consensus        81 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  138 (465)
                      -..|.+.+++++|+++++.+...++.+...+.....++.+.|++++|.+.|+...+.+
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~   59 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS   59 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence            3567778888888888888888877777778888888888888888888888887753

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=96.85  E-value=0.37  Score=44.22  Aligned_cols=129  Identities=16%  Similarity=0.187  Sum_probs=95.6

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHhhcccC---------CCCCCCchHHH-HHHHHHHH
Q 048269          315 SLYHGLIKGLLRLRRAREATQVFREMIKRG-CEPTMHTYIMLLQGHLGKRG---------RKGPDPLVNFD-TIFVGGLV  383 (465)
Q Consensus       315 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~---------~~~~~~~~~~~-~~li~~~~  383 (465)
                      .+|...+..-.+..-.+.|..+|.+..+.| +.++...++.++..++....         ....-||...| +..+..+.
T Consensus       398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi  477 (660)
T COG5107         398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLI  477 (660)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence            446667777777788899999999999888 67888888999988865555         12223444444 67788888


Q ss_pred             hcCCHHHHHHHHHHHHhCCCCCC--HhhHHHHHHHHhhccchHHHHHHHHHHHHcCCCCchhHHH
Q 048269          384 KAGKSLDAAKYVERVMNRGVEVP--RFDYNKFLHYYSNEEGVVMFEEVGKKLREVGLADLADIFQ  446 (465)
Q Consensus       384 ~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~  446 (465)
                      +.++-+.|..+|+..... +..+  ..+|..+|..-.+-|+...+..+-++|.+.  .|-.++.+
T Consensus       478 ~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~e  539 (660)
T COG5107         478 RINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIE  539 (660)
T ss_pred             HhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHH
Confidence            999999999999976653 3333  458999999999999999998888888875  33444443

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.85  E-value=0.53  Score=46.05  Aligned_cols=336  Identities=11%  Similarity=0.096  Sum_probs=195.7

Q ss_pred             HHHHHHHHhhcCCCCCCCHHhHH-----HHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCH--HHHH
Q 048269           56 VYLFFQYTQKAQPCFAHNSITFN-----RMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVREL--KKMV  128 (465)
Q Consensus        56 a~~~f~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a~  128 (465)
                      -+++++......-|+..+..-|.     .+++-+...+.+..|+++-..+...-.....+|......+.+..+.  ++++
T Consensus       414 ~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vl  493 (829)
T KOG2280|consen  414 ELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVL  493 (829)
T ss_pred             HHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHH
Confidence            34555555556667777776665     4577788889999999999887544333356777777777776433  2233


Q ss_pred             HHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh-cCC----CCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 048269          129 NFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLS-EWI----KPNEIAYGWLIKGYCDVGDLIEASKIWNLM  203 (465)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~-~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  203 (465)
                      +..++=..... .....|..+.......|+.+.|..+++.=. .+.    -.+..-+..-+.-+.+.||.+-...++-++
T Consensus       494 d~I~~kls~~~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhl  572 (829)
T KOG2280|consen  494 DKIDEKLSAKL-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHL  572 (829)
T ss_pred             HHHHHHhcccC-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHH
Confidence            33322222222 344567777777788999999999887543 111    112334556677788889988888888777


Q ss_pred             HHCCCCCcHHHHHHHH----------HHHHh------------cCCHHHHHHHH--HHHHH-cCCCCCCcchHHHHHHHH
Q 048269          204 TDEGFEPSIDVVDKMI----------ETFFK------------INKDDEAMKVF--QMMRV-KRMDDLGLSTYRIVIDWM  258 (465)
Q Consensus       204 ~~~g~~~~~~~~~~li----------~~~~~------------~g~~~~A~~~~--~~m~~-~~~~~~~~~~~~~li~~~  258 (465)
                      ...   .+...+...+          .-+++            .++-..+...|  +.... ..+.+ -.........++
T Consensus       573 k~~---~~~s~l~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~-r~~~lk~~a~~~  648 (829)
T KOG2280|consen  573 KNK---LNRSSLFMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEG-RIPALKTAANAF  648 (829)
T ss_pred             HHH---HHHHHHHHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcc-cchhHHHHHHHH
Confidence            653   1222222211          11111            11111111111  11000 00111 111233334444


Q ss_pred             HhcCChHH----------HHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCHhhHHHHHHHHHhc
Q 048269          259 CKRGKISQ----------AYTMLEEMF-KRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEKPDISLYHGLIKGLLRL  327 (465)
Q Consensus       259 ~~~~~~~~----------a~~~~~~m~-~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~  327 (465)
                      .+.....-          -.++.+.+. +.|.....-+.+--+.-+...|+-.+|.++-.+.+-||-..|-.=+.+++..
T Consensus       649 a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~  728 (829)
T KOG2280|consen  649 AKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADI  728 (829)
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhh
Confidence            44433111          112222222 1233444555666667778889999999998888889999988888999999


Q ss_pred             CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 048269          328 RRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPR  407 (465)
Q Consensus       328 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~  407 (465)
                      ++|++-+++-+.+..      +..|.-++.+|                       .+.|+.++|.+++-+...  .   .
T Consensus       729 ~kweeLekfAkskks------PIGy~PFVe~c-----------------------~~~~n~~EA~KYiprv~~--l---~  774 (829)
T KOG2280|consen  729 KKWEELEKFAKSKKS------PIGYLPFVEAC-----------------------LKQGNKDEAKKYIPRVGG--L---Q  774 (829)
T ss_pred             hhHHHHHHHHhccCC------CCCchhHHHHH-----------------------HhcccHHHHhhhhhccCC--h---H
Confidence            999887776665531      23344444444                       889999999988876532  1   1


Q ss_pred             hhHHHHHHHHhhccchHHHHHHHHHHH
Q 048269          408 FDYNKFLHYYSNEEGVVMFEEVGKKLR  434 (465)
Q Consensus       408 ~~~~~ll~~~~~~g~~~~a~~~~~~~~  434 (465)
                          -...+|.+.|++.+|.+..-+-+
T Consensus       775 ----ekv~ay~~~~~~~eAad~A~~~r  797 (829)
T KOG2280|consen  775 ----EKVKAYLRVGDVKEAADLAAEHR  797 (829)
T ss_pred             ----HHHHHHHHhccHHHHHHHHHHhc
Confidence                34567777788877777655433

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=96.84  E-value=0.029  Score=48.92  Aligned_cols=86  Identities=14%  Similarity=0.094  Sum_probs=38.4

Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCCcH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---CcchHHHHHHHHHh
Q 048269          188 CDVGDLIEASKIWNLMTDEGFEPSI----DVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDL---GLSTYRIVIDWMCK  260 (465)
Q Consensus       188 ~~~g~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~~li~~~~~  260 (465)
                      .+.|++++|...|+.+.+.  .|+.    ..+..+..+|...|++++|...|+.+...  .|.   ....+-.+...+..
T Consensus       154 ~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~~~~dAl~klg~~~~~  229 (263)
T PRK10803        154 QDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--YPKSPKAADAMFKVGVIMQD  229 (263)
T ss_pred             HhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhHHHHHHHHHHHH
Confidence            3344555555555555443  1221    23444445555555555555555555433  121   12223333344445


Q ss_pred             cCChHHHHHHHHHHHHC
Q 048269          261 RGKISQAYTMLEEMFKR  277 (465)
Q Consensus       261 ~~~~~~a~~~~~~m~~~  277 (465)
                      .|+.++|..+|+.+.+.
T Consensus       230 ~g~~~~A~~~~~~vi~~  246 (263)
T PRK10803        230 KGDTAKAKAVYQQVIKK  246 (263)
T ss_pred             cCCHHHHHHHHHHHHHH
Confidence            55555555555555443

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=96.73  E-value=0.019  Score=43.52  Aligned_cols=97  Identities=11%  Similarity=0.034  Sum_probs=50.6

Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 048269           73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKT  152 (465)
Q Consensus        73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~  152 (465)
                      |..++..+|-++++.|+.+....+++..-.-++....          ..+.         .-......|+..+..+++.+
T Consensus         1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~----------~~~~---------~~~~spl~Pt~~lL~AIv~s   61 (126)
T PF12921_consen    1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKK----------KEGD---------YPPSSPLYPTSRLLIAIVHS   61 (126)
T ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCcc----------ccCc---------cCCCCCCCCCHHHHHHHHHH
Confidence            3455666666666666666666666544322211000          0000         11223345666666666666


Q ss_pred             HHcCCCHHHHHHHHHHhh--cCCCCCHHhHHHHHHHHH
Q 048269          153 LCQRKLVVEAKYLILKLS--EWIKPNEIAYGWLIKGYC  188 (465)
Q Consensus       153 ~~~~~~~~~a~~~~~~m~--~~~~~~~~~~~~li~~~~  188 (465)
                      |+..|++..|.++++...  .+++.+..+|..|+.-..
T Consensus        62 f~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~   99 (126)
T PF12921_consen   62 FGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY   99 (126)
T ss_pred             HHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            666666666666666655  445555666666655443

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=96.68  E-value=0.21  Score=39.00  Aligned_cols=85  Identities=18%  Similarity=0.052  Sum_probs=37.9

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCC
Q 048269           78 NRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRK  157 (465)
Q Consensus        78 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~  157 (465)
                      ..++..+...+.+......++.+...+..+...++.++..|++.. ..+.++.++.      ..+......+++.|.+.+
T Consensus        11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~   83 (140)
T smart00299       11 SEVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAK   83 (140)
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence            344444444555555555555555444444445555555555432 2222333321      011222233444455555


Q ss_pred             CHHHHHHHHHHh
Q 048269          158 LVVEAKYLILKL  169 (465)
Q Consensus       158 ~~~~a~~~~~~m  169 (465)
                      .++++.-++.++
T Consensus        84 l~~~~~~l~~k~   95 (140)
T smart00299       84 LYEEAVELYKKD   95 (140)
T ss_pred             cHHHHHHHHHhh
Confidence            555555555444

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=96.65  E-value=0.25  Score=39.55  Aligned_cols=132  Identities=14%  Similarity=0.098  Sum_probs=103.4

Q ss_pred             CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCHHHHH
Q 048269          209 EPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIE-ADNLTLS  287 (465)
Q Consensus       209 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~  287 (465)
                      -|+...-..|..+..+.|+..+|...|++... |+...|....-.+.++....+++..|...++++.+.+.. -++.+.-
T Consensus        86 ApTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L  164 (251)
T COG4700          86 APTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL  164 (251)
T ss_pred             chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence            57888888899999999999999999999874 665558888888999999999999999999998876411 1233455


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHhcC--CCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048269          288 SIIYGLLARGRLREAYKVVEEIEK--PDISLYHGLIKGLLRLRRAREATQVFREMI  341 (465)
Q Consensus       288 ~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  341 (465)
                      .+.+.|...|+..+|..-|+....  |+...-......+.+.|+.+++..-+.++.
T Consensus       165 l~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~  220 (251)
T COG4700         165 LFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVAVV  220 (251)
T ss_pred             HHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence            677889999999999999999888  776655555566677787776665444443

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.63  E-value=0.087  Score=49.73  Aligned_cols=169  Identities=10%  Similarity=0.073  Sum_probs=104.9

Q ss_pred             CCCCHHHHHHHHhcCCCChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHH
Q 048269           35 FNLTHEFFLQICNNFPLSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIA  114 (465)
Q Consensus        35 ~~~~~~~~~~~l~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l  114 (465)
                      ..+++..+..-..-+.++.+.+....... ..-+.+  .....+.++..+-+.|..+.|+++..+-..           -
T Consensus       259 ~~ld~~~~~fk~av~~~d~~~v~~~i~~~-~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~-----------r  324 (443)
T PF04053_consen  259 YELDLSELEFKTAVLRGDFEEVLRMIAAS-NLLPNI--PKDQGQSIARFLEKKGYPELALQFVTDPDH-----------R  324 (443)
T ss_dssp             EE--HHHHHHHHHHHTT-HHH-----HHH-HTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH-----------H
T ss_pred             EEECHHHHHHHHHHHcCChhhhhhhhhhh-hhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcCChHH-----------H
Confidence            34566666666655666666655555422 111222  255588888888888888888877655322           2


Q ss_pred             HHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHH
Q 048269          115 LMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLI  194 (465)
Q Consensus       115 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~  194 (465)
                      .....+.|+++.|.++.+.      ..+...|..|.....++|+++-|++.|.+..        -|..|+-.|.-.|+.+
T Consensus       325 FeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~  390 (443)
T PF04053_consen  325 FELALQLGNLDIALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAK--------DFSGLLLLYSSTGDRE  390 (443)
T ss_dssp             HHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HH
T ss_pred             hHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc--------CccccHHHHHHhCCHH
Confidence            4455667888888776433      3367788888888888888888888888876        3666777788888888


Q ss_pred             HHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048269          195 EASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQM  237 (465)
Q Consensus       195 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  237 (465)
                      ...++.+.....|-      ++....++.-.|+.++..+++.+
T Consensus       391 ~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~  427 (443)
T PF04053_consen  391 KLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLIE  427 (443)
T ss_dssp             HHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence            88888777776652      45556666667777777776654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.60  E-value=0.029  Score=44.25  Aligned_cols=75  Identities=13%  Similarity=0.161  Sum_probs=57.2

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHhhccchHHHHHHHHHHHHc-----CCCCchhHHHHH
Q 048269          375 DTIFVGGLVKAGKSLDAAKYVERVMNRGVEV-PRFDYNKFLHYYSNEEGVVMFEEVGKKLREV-----GLADLADIFQRY  448 (465)
Q Consensus       375 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----g~~~~~~~~~~~  448 (465)
                      ...++..+...|++++|.++++++...  .| |...|..++.++...|+...|.+.++++.+.     |..|...+-..|
T Consensus        65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~--dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l~  142 (146)
T PF03704_consen   65 LERLAEALLEAGDYEEALRLLQRALAL--DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRALY  142 (146)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHHH
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHHH
Confidence            455677788999999999999999984  45 6679999999999999999999999988644     898888887776


Q ss_pred             HHH
Q 048269          449 GKK  451 (465)
Q Consensus       449 ~~~  451 (465)
                      .++
T Consensus       143 ~~i  145 (146)
T PF03704_consen  143 REI  145 (146)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            654

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=96.59  E-value=0.59  Score=45.40  Aligned_cols=250  Identities=16%  Similarity=0.121  Sum_probs=155.2

Q ss_pred             CChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH----------HHcCCCHHHHHHHHHHhhcCCCC
Q 048269          106 VNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKT----------LCQRKLVVEAKYLILKLSEWIKP  175 (465)
Q Consensus       106 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~----------~~~~~~~~~a~~~~~~m~~~~~~  175 (465)
                      |.+..|..+.......-.++.|+..|-+....   +.......|-..          -+--|.+++|+++|-+|..    
T Consensus       690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY---~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~dr----  762 (1189)
T KOG2041|consen  690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDY---AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADR----  762 (1189)
T ss_pred             CchHHHHHHHHHHHHHHhhhhHhhhhhhhccc---cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccch----
Confidence            56677888888877777888888888665542   222111111111          1224788888888887752    


Q ss_pred             CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHH
Q 048269          176 NEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGF--EPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRI  253 (465)
Q Consensus       176 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~  253 (465)
                          -...|..+.+.|||-.+.++++.-- .+.  +.-...|+.+...+.....|++|.+.|..-.       +   -..
T Consensus       763 ----rDLAielr~klgDwfrV~qL~r~g~-~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~-------~---~e~  827 (1189)
T KOG2041|consen  763 ----RDLAIELRKKLGDWFRVYQLIRNGG-SDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCG-------D---TEN  827 (1189)
T ss_pred             ----hhhhHHHHHhhhhHHHHHHHHHccC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------c---hHh
Confidence                1334677778888877776664321 111  1124578888888888888999988887532       1   123


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCHhhHHHHHHHHHhcCCHHHH
Q 048269          254 VIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEKPDISLYHGLIKGLLRLRRAREA  333 (465)
Q Consensus       254 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a  333 (465)
                      .+.++.+..++++...+...+.     -+....-.+..++.+.|.-++|.+.+-+...|.     +.+..|...++|.+|
T Consensus       828 ~~ecly~le~f~~LE~la~~Lp-----e~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv~tCv~LnQW~~a  897 (1189)
T KOG2041|consen  828 QIECLYRLELFGELEVLARTLP-----EDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAVHTCVELNQWGEA  897 (1189)
T ss_pred             HHHHHHHHHhhhhHHHHHHhcC-----cccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHHHHHHHHHHHHHH
Confidence            4667777777766665555443     345556677888899999999988876665543     345677888899999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048269          334 TQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMN  400 (465)
Q Consensus       334 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  400 (465)
                      .++-++..    -|...|...--.+.+        -.+.. .-.-|..+.+.|+.-.|.+++.+|.+
T Consensus       898 velaq~~~----l~qv~tliak~aaql--------l~~~~-~~eaIe~~Rka~~~~daarll~qmae  951 (1189)
T KOG2041|consen  898 VELAQRFQ----LPQVQTLIAKQAAQL--------LADAN-HMEAIEKDRKAGRHLDAARLLSQMAE  951 (1189)
T ss_pred             HHHHHhcc----chhHHHHHHHHHHHH--------Hhhcc-hHHHHHHhhhcccchhHHHHHHHHhH
Confidence            88877653    344433322111110        00000 01235566788888888888888865

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.48  E-value=0.018  Score=39.58  Aligned_cols=63  Identities=14%  Similarity=0.038  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCC---CC-HhhHHHHHHHHhhccchHHHHHHHHHHHH
Q 048269          373 NFDTIFVGGLVKAGKSLDAAKYVERVMNR--GVE---VP-RFDYNKFLHYYSNEEGVVMFEEVGKKLRE  435 (465)
Q Consensus       373 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~---p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  435 (465)
                      .+|+.+...|...|++++|+..|++..+.  ...   |+ ..++..+...+...|++++|.+++++..+
T Consensus         6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen    6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            56788899999999999999999998753  122   22 34788889999999999999999998775

...

>PRK15331 chaperone protein SicA; Provisional

Probab=96.46  E-value=0.044  Score=43.14  Aligned_cols=88  Identities=5%  Similarity=-0.116  Sum_probs=46.8

Q ss_pred             HHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHH
Q 048269           82 DIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVE  161 (465)
Q Consensus        82 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~  161 (465)
                      .-+-..|++++|..+|.-+.-.++.+..-|..|..++-..+++++|+..|......+ .-|+..+-....++...|+.+.
T Consensus        45 y~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~  123 (165)
T PRK15331         45 YEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAK  123 (165)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHH
Confidence            334455666666666665555555555555555555555566666666555544433 2233333344555555555566


Q ss_pred             HHHHHHHhh
Q 048269          162 AKYLILKLS  170 (465)
Q Consensus       162 a~~~~~~m~  170 (465)
                      |.+.|+...
T Consensus       124 A~~~f~~a~  132 (165)
T PRK15331        124 ARQCFELVN  132 (165)
T ss_pred             HHHHHHHHH
Confidence            655555554

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=96.44  E-value=0.061  Score=45.90  Aligned_cols=113  Identities=17%  Similarity=0.044  Sum_probs=81.9

Q ss_pred             HHHHHHhc--CCCHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccCCCCCCCchHHH
Q 048269          303 YKVVEEIE--KPDISLYHGLIKGLLRL-----RRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFD  375 (465)
Q Consensus       303 ~~~~~~~~--~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~  375 (465)
                      ...|..+.  +.|-.+|-..+..+...     +.++-....++.|.+.|+.-|..+|+.|+..+-     ++.-.....+
T Consensus        54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfP-----KgkfiP~nvf  128 (406)
T KOG3941|consen   54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFP-----KGKFIPQNVF  128 (406)
T ss_pred             hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCc-----ccccccHHHH
Confidence            44555555  26666777777766543     567777778899999999999999999999872     2222223344


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhccc
Q 048269          376 TIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNEEG  422 (465)
Q Consensus       376 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~  422 (465)
                      ....-.|=+..  +-++.++++|...|+.||..+-..|++++.+.+-
T Consensus       129 Q~~F~HYP~QQ--~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~  173 (406)
T KOG3941|consen  129 QKVFLHYPQQQ--NCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF  173 (406)
T ss_pred             HHHHhhCchhh--hHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence            44444454443  4589999999999999999999999999988653

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=96.40  E-value=0.52  Score=42.01  Aligned_cols=167  Identities=13%  Similarity=0.023  Sum_probs=98.3

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHhcC---------CCHhh
Q 048269          250 TYRIVIDWMCKRGKISQAYTMLEEMFKR-GIEA---DNLTLSSIIYGLLARGRLREAYKVVEEIEK---------PDISL  316 (465)
Q Consensus       250 ~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---------~~~~~  316 (465)
                      .|..+.+++.+..++.+++.+-+.-... |..|   ......++..++...+.++++.+.|+...+         ....+
T Consensus        85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv  164 (518)
T KOG1941|consen   85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV  164 (518)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence            4445555555555555555554433321 2222   122334455666666777777777776655         22346


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcCCHHHHH
Q 048269          317 YHGLIKGLLRLRRAREATQVFREMIKR----GCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAA  392 (465)
Q Consensus       317 ~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~  392 (465)
                      |-.|-..|.+..++++|.-+..+..+.    ++.-=..-|..+...                  -|..++...|....|.
T Consensus       165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~ly------------------hmaValR~~G~LgdA~  226 (518)
T KOG1941|consen  165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLY------------------HMAVALRLLGRLGDAM  226 (518)
T ss_pred             hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHH------------------HHHHHHHHhcccccHH
Confidence            777778888888888887766655432    222212223333222                  2455677888888888


Q ss_pred             HHHHHHHh----CCCCCC-HhhHHHHHHHHhhccchHHHHHHHHHHH
Q 048269          393 KYVERVMN----RGVEVP-RFDYNKFLHYYSNEEGVVMFEEVGKKLR  434 (465)
Q Consensus       393 ~~~~~m~~----~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~  434 (465)
                      +..++..+    .|-.+. ......+.+.|...|+.|.|..-++...
T Consensus       227 e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am  273 (518)
T KOG1941|consen  227 ECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM  273 (518)
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence            88887654    343333 2356677888888999998877666544

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=96.33  E-value=0.8  Score=41.67  Aligned_cols=249  Identities=12%  Similarity=-0.016  Sum_probs=147.8

Q ss_pred             ChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 048269           52 SWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFF  131 (465)
Q Consensus        52 ~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  131 (465)
                      .+..|+..+..++..-+.   +..-|..-+..+...|++++|.--.+.-.+...-........-+++...++..+|.+.+
T Consensus        64 ~Y~nal~~yt~Ai~~~pd---~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~  140 (486)
T KOG0550|consen   64 TYGNALKNYTFAIDMCPD---NASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKL  140 (486)
T ss_pred             hHHHHHHHHHHHHHhCcc---chhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHHh
Confidence            445677777777444433   56667777777777788888776665554433211223333334444444444444333


Q ss_pred             H---------------HhhhCCC-CCCHHHHHHHH-HHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHH
Q 048269          132 H---------------IMNDCGC-EYSLEMLNKVV-KTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLI  194 (465)
Q Consensus       132 ~---------------~~~~~~~-~~~~~~~~~ll-~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~  194 (465)
                      +               .+..... +|....+..+- .++.-.|+.++|.+.--.+..-...+....-.=-.++.-.++.+
T Consensus       141 ~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~  220 (486)
T KOG0550|consen  141 KSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNAD  220 (486)
T ss_pred             hhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchH
Confidence            3               1111111 23334443332 45667899999998877776322333322222223344668899


Q ss_pred             HHHHHHHHHHHCCCCCcHHHHHH---HHHH----------HHhcCCHHHHHHHHHHHHHcCCCCC----CcchHHHHHHH
Q 048269          195 EASKIWNLMTDEGFEPSIDVVDK---MIET----------FFKINKDDEAMKVFQMMRVKRMDDL----GLSTYRIVIDW  257 (465)
Q Consensus       195 ~a~~~~~~m~~~g~~~~~~~~~~---li~~----------~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~~li~~  257 (465)
                      .+...|.+....+  |+...--.   +...          ..+.|++..|.+.|.+.+..  .|.    +...|-....+
T Consensus       221 ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~i--dP~n~~~naklY~nra~v  296 (486)
T KOG0550|consen  221 KAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNI--DPSNKKTNAKLYGNRALV  296 (486)
T ss_pred             HHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcC--CccccchhHHHHHHhHhh
Confidence            9999999988763  55433222   2222          35679999999999998743  442    33345566667


Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH---HHHHHhcCCHHHHHHHHHHhcC
Q 048269          258 MCKRGKISQAYTMLEEMFKRGIEADNLTLSSI---IYGLLARGRLREAYKVVEEIEK  311 (465)
Q Consensus       258 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l---i~~~~~~~~~~~a~~~~~~~~~  311 (465)
                      ..+.|+..+|+.--+...+.    |..-.-.+   ..++...+++++|.+-|+...+
T Consensus       297 ~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~le~~e~AV~d~~~a~q  349 (486)
T KOG0550|consen  297 NIRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQ  349 (486)
T ss_pred             hcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            78899999999988877654    44333222   3355667889999988888766

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.32  E-value=0.96  Score=44.38  Aligned_cols=295  Identities=11%  Similarity=0.057  Sum_probs=138.1

Q ss_pred             hCCCCCCHHHHHHH-----HhcCC--CChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChh--HHH-HHHHHHh
Q 048269           32 SCNFNLTHEFFLQI-----CNNFP--LSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNID--LFW-ETLQEMG  101 (465)
Q Consensus        32 ~~~~~~~~~~~~~~-----l~~~~--~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~a~-~~~~~~~  101 (465)
                      +.|++++...+..+     +.++.  ..+..|.++-.|+  .-+... +..+|......+.+..+..  +++ .+-+++.
T Consensus       425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l--~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls  501 (829)
T KOG2280|consen  425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLL--NLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLS  501 (829)
T ss_pred             ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHh--CCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhc
Confidence            45677776655432     32322  2567788888885  222222 2566666666666663221  222 3333332


Q ss_pred             hCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC----CCHHHHHHHHHHHHcCCCHHHHHHHHHHhh-------
Q 048269          102 RRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCE----YSLEMLNKVVKTLCQRKLVVEAKYLILKLS-------  170 (465)
Q Consensus       102 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~-------  170 (465)
                      .. ..+...|..+.+.....|+++-|..+++.=...+..    .+..-+...+.-+...|+.+....++-.+.       
T Consensus       502 ~~-~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~  580 (829)
T KOG2280|consen  502 AK-LTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSS  580 (829)
T ss_pred             cc-CCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH
Confidence            22 234445777777777778888777776543332211    122234445555556666555554444432       


Q ss_pred             -----cCCCCCHHhHHHHHH--------HHHhcCCHHHHHHHHHHHH------HCCCCCcHHHHHHHHHHHHhcCCHH--
Q 048269          171 -----EWIKPNEIAYGWLIK--------GYCDVGDLIEASKIWNLMT------DEGFEPSIDVVDKMIETFFKINKDD--  229 (465)
Q Consensus       171 -----~~~~~~~~~~~~li~--------~~~~~g~~~~a~~~~~~m~------~~g~~~~~~~~~~li~~~~~~g~~~--  229 (465)
                           ...+.....|..+++        .+.+.++-..+...|..=.      ..|..|+..   .....+.+.....  
T Consensus       581 l~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk---~~a~~~a~sk~~s~e  657 (829)
T KOG2280|consen  581 LFMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALK---TAANAFAKSKEKSFE  657 (829)
T ss_pred             HHHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHH---HHHHHHhhhhhhhhH
Confidence                 112333444444443        1122233222222221110      122233322   2223333332211  


Q ss_pred             --------HHHHHHHHHHHc-CCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 048269          230 --------EAMKVFQMMRVK-RMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLR  300 (465)
Q Consensus       230 --------~A~~~~~~m~~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~  300 (465)
                              +-+++.+.+..+ |..- ..-+.+--+.-+...|+..+|.++-.+.+    -||-..|-.=+.+++..++++
T Consensus       658 ~ka~ed~~kLl~lQ~~Le~q~~~~f-~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kwe  732 (829)
T KOG2280|consen  658 AKALEDQMKLLKLQRTLEDQFGGSF-VDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWE  732 (829)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccc-ccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHH
Confidence                    111222222211 1111 22234444455556666666666555543    345666666666666666666


Q ss_pred             HHHHHHHHhcCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 048269          301 EAYKVVEEIEKPDISLYHGLIKGLLRLRRAREATQVFREM  340 (465)
Q Consensus       301 ~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m  340 (465)
                      +-+++-+..+.  +.-|.-++.+|.+.|+.++|.+++-+.
T Consensus       733 eLekfAkskks--PIGy~PFVe~c~~~~n~~EA~KYiprv  770 (829)
T KOG2280|consen  733 ELEKFAKSKKS--PIGYLPFVEACLKQGNKDEAKKYIPRV  770 (829)
T ss_pred             HHHHHHhccCC--CCCchhHHHHHHhcccHHHHhhhhhcc
Confidence            65555444332  455566666666666666666665544

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=96.31  E-value=0.15  Score=47.28  Aligned_cols=66  Identities=8%  Similarity=-0.129  Sum_probs=57.0

Q ss_pred             CCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCh---HHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 048269           72 HNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVND---KTFKIALMTLAEVRELKKMVNFFHIMNDC  137 (465)
Q Consensus        72 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  137 (465)
                      .+...|+.+..+|.+.|++++|+..|++..+.++.+.   .+|..+..+|...|+.++|+..++...+.
T Consensus        73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3678899999999999999999999999888877554   45889999999999999999999988875

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=96.27  E-value=0.03  Score=37.86  Aligned_cols=52  Identities=13%  Similarity=0.176  Sum_probs=20.0

Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048269          187 YCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMR  239 (465)
Q Consensus       187 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  239 (465)
                      |.+.++++.|.++++.+...+ +.+...+.....++.+.|++++|.+.|+...
T Consensus         5 ~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l   56 (73)
T PF13371_consen    5 YLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERAL   56 (73)
T ss_pred             HHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence            333344444444444443332 1123333333344444444444444444443

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.23  E-value=0.71  Score=44.35  Aligned_cols=91  Identities=10%  Similarity=0.024  Sum_probs=46.0

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHhhCCCC-ChH------HHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCCHHH
Q 048269           77 FNRMVDIIGKSRNIDLFWETLQEMGRRRLV-NDK------TFKIALMTLAE----VRELKKMVNFFHIMNDCGCEYSLEM  145 (465)
Q Consensus        77 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~------~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~  145 (465)
                      +..++...+=.|+-+.+++.+....+.+-. .+.      +|+.++..++.    ..+.+.|.++++.+.+.  -|+...
T Consensus       191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l  268 (468)
T PF10300_consen  191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL  268 (468)
T ss_pred             HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence            445555555666666776666665443322 211      23333333322    34455666666666554  345444


Q ss_pred             HHHH-HHHHHcCCCHHHHHHHHHHh
Q 048269          146 LNKV-VKTLCQRKLVVEAKYLILKL  169 (465)
Q Consensus       146 ~~~l-l~~~~~~~~~~~a~~~~~~m  169 (465)
                      |... .+.+...|++++|++.|++.
T Consensus       269 fl~~~gR~~~~~g~~~~Ai~~~~~a  293 (468)
T PF10300_consen  269 FLFFEGRLERLKGNLEEAIESFERA  293 (468)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHh
Confidence            4332 23444556666666666653

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PRK11906 transcriptional regulator; Provisional

Probab=96.22  E-value=0.37  Score=44.82  Aligned_cols=149  Identities=12%  Similarity=0.001  Sum_probs=96.6

Q ss_pred             ChhHHHHHHHHHhhcCCCCCC-CHHhHHHHHHHHHh---------cCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhc
Q 048269           52 SWRPVYLFFQYTQKAQPCFAH-NSITFNRMVDIIGK---------SRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEV  121 (465)
Q Consensus        52 ~~~~a~~~f~~~~~~~~~~~~-~~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~  121 (465)
                      +.+.|+.+|..++ ......| ....|..+..++..         .....+|.++.+...+.+..++.+...+..+..-.
T Consensus       273 ~~~~Al~lf~ra~-~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~  351 (458)
T PRK11906        273 SIYRAMTIFDRLQ-NKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLS  351 (458)
T ss_pred             HHHHHHHHHHHHh-hcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhh
Confidence            4567999999995 2222233 34555544443322         23445677888888888888888888888888888


Q ss_pred             CCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh--cCCCCCHHhHHHHHHHHHhcCCHHHHHHH
Q 048269          122 RELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLS--EWIKPNEIAYGWLIKGYCDVGDLIEASKI  199 (465)
Q Consensus       122 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~--~~~~~~~~~~~~li~~~~~~g~~~~a~~~  199 (465)
                      ++++.|...|++....+ +-...+|......+.-.|+.++|.+.+++..  +-...-.......++.|+..+ ++.|+++
T Consensus       352 ~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~  429 (458)
T PRK11906        352 GQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKL  429 (458)
T ss_pred             cchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHH
Confidence            88999999999888764 3344555555556667888999988888844  322333344444455666544 5667766


Q ss_pred             HHHH
Q 048269          200 WNLM  203 (465)
Q Consensus       200 ~~~m  203 (465)
                      |-+-
T Consensus       430 ~~~~  433 (458)
T PRK11906        430 YYKE  433 (458)
T ss_pred             Hhhc
Confidence            6543

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=96.21  E-value=1  Score=41.62  Aligned_cols=113  Identities=11%  Similarity=0.055  Sum_probs=68.4

Q ss_pred             hcCC-HHHHHHHHHHhcC---CCHhhHHHHHH----HHHh---cCCHHHHHHHHHHHHHcCCCCCHHH----HHHHHHH-
Q 048269          295 ARGR-LREAYKVVEEIEK---PDISLYHGLIK----GLLR---LRRAREATQVFREMIKRGCEPTMHT----YIMLLQG-  358 (465)
Q Consensus       295 ~~~~-~~~a~~~~~~~~~---~~~~~~~~li~----~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~----~~~ll~~-  358 (465)
                      +.|. -++|.++++.+..   -|...-|.+..    +|.+   ...+.+-+.+-+-+.+.|+.|-...    -|.+-.+ 
T Consensus       391 ~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAE  470 (549)
T PF07079_consen  391 EIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAE  470 (549)
T ss_pred             hcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHH
Confidence            3344 6777777777776   44444443322    2222   2334444455455556677764322    2222222 


Q ss_pred             -hhcccC----------CCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHH
Q 048269          359 -HLGKRG----------RKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNK  412 (465)
Q Consensus       359 -~~~~~~----------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~  412 (465)
                       +...++          -..+.|++.+|..++-++....++++|..++..+     +|+..++++
T Consensus       471 yLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~ds  530 (549)
T PF07079_consen  471 YLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDS  530 (549)
T ss_pred             HHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHH
Confidence             112222          4567899999999999999999999999999875     566666653

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=96.19  E-value=0.7  Score=44.51  Aligned_cols=56  Identities=25%  Similarity=0.256  Sum_probs=29.8

Q ss_pred             hHHHHHHHHHhcCCH--HHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048269          179 AYGWLIKGYCDVGDL--IEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQM  237 (465)
Q Consensus       179 ~~~~li~~~~~~g~~--~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  237 (465)
                      .++..=++|.+..+.  -+.+.-+++++++|-.|+...   +...|+-.|++.+|-++|.+
T Consensus       600 ~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~  657 (1081)
T KOG1538|consen  600 DFETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR  657 (1081)
T ss_pred             hhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence            344444555555443  344445566677776676543   23344445566666665543

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.17  E-value=0.57  Score=40.68  Aligned_cols=143  Identities=8%  Similarity=0.049  Sum_probs=75.1

Q ss_pred             HHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCC-CCHHhHHHHHHHHHhcCCHHH
Q 048269          117 TLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIK-PNEIAYGWLIKGYCDVGDLIE  195 (465)
Q Consensus       117 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~li~~~~~~g~~~~  195 (465)
                      .....|++.+|...|....... +-+...--.+..+|...|+.+.|..++..+..... ........-|..+.+.....+
T Consensus       143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~  221 (304)
T COG3118         143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE  221 (304)
T ss_pred             hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence            4455666666666666666543 23344445566666777777777777766652111 111111222333444444444


Q ss_pred             HHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcC
Q 048269          196 ASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRG  262 (465)
Q Consensus       196 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~  262 (465)
                      ...+-...-..  +-|...-..+...+...|+.+.|.+.+-.+......-.|...-..++..+.-.|
T Consensus       222 ~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g  286 (304)
T COG3118         222 IQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG  286 (304)
T ss_pred             HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence            44444444332  124555556666666677777776666655554333335555556666555555

>PRK15331 chaperone protein SicA; Provisional

Probab=96.16  E-value=0.35  Score=38.22  Aligned_cols=93  Identities=11%  Similarity=0.029  Sum_probs=69.8

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCC
Q 048269          113 IALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGD  192 (465)
Q Consensus       113 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~  192 (465)
                      .....+...|++++|..+|.-+.-.+ +-+..-+..|..++-..+++++|+..|.....-..-|+..+-....+|...|+
T Consensus        42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~  120 (165)
T PRK15331         42 AHAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRK  120 (165)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCC
Confidence            33445667899999999998887765 44566677788888888899999999888662223455556667788888899


Q ss_pred             HHHHHHHHHHHHHC
Q 048269          193 LIEASKIWNLMTDE  206 (465)
Q Consensus       193 ~~~a~~~~~~m~~~  206 (465)
                      .+.|...|....++
T Consensus       121 ~~~A~~~f~~a~~~  134 (165)
T PRK15331        121 AAKARQCFELVNER  134 (165)
T ss_pred             HHHHHHHHHHHHhC
Confidence            99999988888773

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.14  E-value=0.021  Score=39.26  Aligned_cols=60  Identities=18%  Similarity=0.222  Sum_probs=30.0

Q ss_pred             chHHHHHHHHHhcCChHHHHHHHHHHHHC----CCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048269          249 STYRIVIDWMCKRGKISQAYTMLEEMFKR----GIE-AD-NLTLSSIIYGLLARGRLREAYKVVEE  308 (465)
Q Consensus       249 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~-~~-~~~~~~li~~~~~~~~~~~a~~~~~~  308 (465)
                      .+++.+...|...|++++|+..|++..+.    |.. |+ ..++..+..+|...|++++|.+.+++
T Consensus         6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~   71 (78)
T PF13424_consen    6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK   71 (78)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            35566666666666666666666665432    110 11 23344444445555555555555443

...

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.92  E-value=1  Score=39.23  Aligned_cols=149  Identities=13%  Similarity=0.016  Sum_probs=102.6

Q ss_pred             HHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCH
Q 048269           80 MVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLV  159 (465)
Q Consensus        80 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~  159 (465)
                      -.......|++.+|..+|.........+...-..++.+|...|+.+.|..++..+...--.........-|..+.+....
T Consensus       140 ~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~  219 (304)
T COG3118         140 EAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT  219 (304)
T ss_pred             HhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence            34456678899999999999888877677788888999999999999999999887643222222222334555555555


Q ss_pred             HHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCcHHHHHHHHHHHHhcCCHHH
Q 048269          160 VEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDE--GFEPSIDVVDKMIETFFKINKDDE  230 (465)
Q Consensus       160 ~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~  230 (465)
                      .+...+-.+.-. .+.|...-..+...+...|+.+.|.+.+-.+.+.  |. -|...-..++..+.-.|.-+.
T Consensus       220 ~~~~~l~~~~aa-dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~-~d~~~Rk~lle~f~~~g~~Dp  290 (304)
T COG3118         220 PEIQDLQRRLAA-DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGF-EDGEARKTLLELFEAFGPADP  290 (304)
T ss_pred             CCHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc-cCcHHHHHHHHHHHhcCCCCH
Confidence            555555554442 2457777888888899999999998876666553  33 355566677777766664443

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.90  E-value=0.89  Score=38.31  Aligned_cols=25  Identities=8%  Similarity=0.206  Sum_probs=11.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHh
Q 048269          110 TFKIALMTLAEVRELKKMVNFFHIM  134 (465)
Q Consensus       110 ~~~~l~~~~~~~~~~~~a~~~~~~~  134 (465)
                      .|.....+|....++++|...+...
T Consensus        33 ~yekAAvafRnAk~feKakdcLlkA   57 (308)
T KOG1585|consen   33 LYEKAAVAFRNAKKFEKAKDCLLKA   57 (308)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHH
Confidence            3444444444455555555444443

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.86  E-value=0.39  Score=45.47  Aligned_cols=131  Identities=10%  Similarity=0.046  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHH
Q 048269          109 KTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYC  188 (465)
Q Consensus       109 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~  188 (465)
                      .-.+.++..+-+.|..+.|+++-.         |+.   .-.....+.|+++.|.++.++..     +...|..|.....
T Consensus       296 ~~~~~i~~fL~~~G~~e~AL~~~~---------D~~---~rFeLAl~lg~L~~A~~~a~~~~-----~~~~W~~Lg~~AL  358 (443)
T PF04053_consen  296 DQGQSIARFLEKKGYPELALQFVT---------DPD---HRFELALQLGNLDIALEIAKELD-----DPEKWKQLGDEAL  358 (443)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HHHHHHHCCCCS-----THHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHCCCHHHHHhhcC---------ChH---HHhHHHHhcCCHHHHHHHHHhcC-----cHHHHHHHHHHHH
Confidence            334555555555555555555421         111   11223344555555555433332     4445555555555


Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHH
Q 048269          189 DVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAY  268 (465)
Q Consensus       189 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~  268 (465)
                      +.|+++-|++.|.+...         |..|+-.|.-.|+.+...++.+.....|       -++....++...|+.++..
T Consensus       359 ~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~-------~~n~af~~~~~lgd~~~cv  422 (443)
T PF04053_consen  359 RQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG-------DINIAFQAALLLGDVEECV  422 (443)
T ss_dssp             HTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT--------HHHHHHHHHHHT-HHHHH
T ss_pred             HcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc-------CHHHHHHHHHHcCCHHHHH
Confidence            55555555555554432         3344444455555554444444443332       1333344444445555544


Q ss_pred             HHHH
Q 048269          269 TMLE  272 (465)
Q Consensus       269 ~~~~  272 (465)
                      +++.
T Consensus       423 ~lL~  426 (443)
T PF04053_consen  423 DLLI  426 (443)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.82  E-value=0.94  Score=45.06  Aligned_cols=76  Identities=12%  Similarity=0.246  Sum_probs=33.2

Q ss_pred             cCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 048269          155 QRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKV  234 (465)
Q Consensus       155 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~  234 (465)
                      +.|++++|...|-+-..-+.|.     .+|.-|........--.+++.+.+.|+. +...-+.|+.+|.+.++.++-.++
T Consensus       380 ~Kgdf~~A~~qYI~tI~~le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~ef  453 (933)
T KOG2114|consen  380 GKGDFDEATDQYIETIGFLEPS-----EVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEF  453 (933)
T ss_pred             hcCCHHHHHHHHHHHcccCChH-----HHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHH
Confidence            3455555554444433222221     2233334444444444444455444432 333334455555555555554444


Q ss_pred             HH
Q 048269          235 FQ  236 (465)
Q Consensus       235 ~~  236 (465)
                      .+
T Consensus       454 I~  455 (933)
T KOG2114|consen  454 IS  455 (933)
T ss_pred             Hh
Confidence            43

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=95.79  E-value=0.57  Score=35.26  Aligned_cols=63  Identities=22%  Similarity=0.129  Sum_probs=47.6

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhccchHHHHHHHHHHHHcCC
Q 048269          375 DTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNEEGVVMFEEVGKKLREVGL  438 (465)
Q Consensus       375 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~  438 (465)
                      ++..+..+...|+-+.-.+++.++.+. -.+++...-.+..+|.+.|+..++.+++.+..+.|+
T Consensus        89 vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~  151 (161)
T PF09205_consen   89 VDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL  151 (161)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence            444555668999999999999998763 468889999999999999999999999999999985

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=95.71  E-value=1.1  Score=38.12  Aligned_cols=59  Identities=14%  Similarity=0.324  Sum_probs=42.6

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCCCCc---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048269          182 WLIKGYCDVGDLIEASKIWNLMTDEGFEPS---IDVVDKMIETFFKINKDDEAMKVFQMMRVK  241 (465)
Q Consensus       182 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  241 (465)
                      .+.+-|.+.|.+..|..-++.|.+. .+-+   ...+-.+..+|...|-.++|.+.-.-+...
T Consensus       172 ~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N  233 (254)
T COG4105         172 AIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN  233 (254)
T ss_pred             HHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence            3456788888888888888888876 2222   334566777888888888888777666544

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=95.70  E-value=0.83  Score=36.48  Aligned_cols=136  Identities=15%  Similarity=0.162  Sum_probs=88.3

Q ss_pred             HHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048269          197 SKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFK  276 (465)
Q Consensus       197 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  276 (465)
                      .++++.+.+.|++|+...+..+++.+.+.|++.....++.    .++.+ |.......+-.+.  +....+.++--+|.+
T Consensus        14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq----~~Vi~-DSk~lA~~LLs~~--~~~~~~~Ql~lDMLk   86 (167)
T PF07035_consen   14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQ----YHVIP-DSKPLACQLLSLG--NQYPPAYQLGLDMLK   86 (167)
T ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHh----hcccC-CcHHHHHHHHHhH--ccChHHHHHHHHHHH
Confidence            3556666778888999999999999999988766555443    56666 5544444443332  233344444444443


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048269          277 RGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEKPDISLYHGLIKGLLRLRRAREATQVFREMIKR  343 (465)
Q Consensus       277 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  343 (465)
                      .    =...+..++..+...|++-+|.++.+.....+......++.+..+.++...-..+|+-..+.
T Consensus        87 R----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~  149 (167)
T PF07035_consen   87 R----LGTAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFEER  149 (167)
T ss_pred             H----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3    01135667778888999999999988876654455566777777777776666666666543

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=95.68  E-value=0.18  Score=43.20  Aligned_cols=89  Identities=15%  Similarity=0.162  Sum_probs=54.1

Q ss_pred             CCCHHhHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhc----------------CCHHHHH
Q 048269          174 KPNEIAYGWLIKGYCD-----VGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKI----------------NKDDEAM  232 (465)
Q Consensus       174 ~~~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~----------------g~~~~A~  232 (465)
                      ..|..+|-+.+..+..     .+.++-....++.|.+-|+.-|..+|+.|++.+-+-                .+-+-++
T Consensus        64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I  143 (406)
T KOG3941|consen   64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI  143 (406)
T ss_pred             cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence            3344455555544432     245555556666666667777777776666655332                1223466


Q ss_pred             HHHHHHHHcCCCCCCcchHHHHHHHHHhcCC
Q 048269          233 KVFQMMRVKRMDDLGLSTYRIVIDWMCKRGK  263 (465)
Q Consensus       233 ~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~  263 (465)
                      +++++|...|+.| |..+-..+++++.+.+.
T Consensus       144 ~vLeqME~hGVmP-dkE~e~~lvn~FGr~~~  173 (406)
T KOG3941|consen  144 KVLEQMEWHGVMP-DKEIEDILVNAFGRWNF  173 (406)
T ss_pred             HHHHHHHHcCCCC-chHHHHHHHHHhccccc
Confidence            7777777777777 77777777777766664

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.67  E-value=0.83  Score=36.25  Aligned_cols=133  Identities=11%  Similarity=0.013  Sum_probs=79.7

Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHH---H
Q 048269           73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVN--DKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEML---N  147 (465)
Q Consensus        73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~  147 (465)
                      +...|..-+. +.+.+..++|+.-|..+.+.|.-+  .-............|+...|...|+++-...-.|-..--   .
T Consensus        58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl  136 (221)
T COG4649          58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL  136 (221)
T ss_pred             chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence            3344444443 345566778888888777776532  222333344566777788888888777664333332211   1


Q ss_pred             HHHHHHHcCCCHHHHHHHHHHhh-cCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048269          148 KVVKTLCQRKLVVEAKYLILKLS-EWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDE  206 (465)
Q Consensus       148 ~ll~~~~~~~~~~~a~~~~~~m~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  206 (465)
                      .-...+...|.++......+.+. .+.+.....-..|.-+-.+.|++..|.+.|..+...
T Consensus       137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D  196 (221)
T COG4649         137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND  196 (221)
T ss_pred             HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence            11223456777777777777766 555555566666766777777777777777777653

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=95.66  E-value=2.2  Score=41.06  Aligned_cols=85  Identities=12%  Similarity=-0.019  Sum_probs=41.6

Q ss_pred             CCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--C-CCcHHHHHHHHHHHHhcCCHHHHHH
Q 048269          157 KLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEG--F-EPSIDVVDKMIETFFKINKDDEAMK  233 (465)
Q Consensus       157 ~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~-~~~~~~~~~li~~~~~~g~~~~A~~  233 (465)
                      ...+.|.++++.+....|-...-.-.-.+.+...|++++|++.|+......  . +.....+-.+.-++.-..+|++|.+
T Consensus       247 ~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~  326 (468)
T PF10300_consen  247 VPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE  326 (468)
T ss_pred             CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence            345566666666653333222222223344455566666666666543210  0 1122233344445555666666666


Q ss_pred             HHHHHHHc
Q 048269          234 VFQMMRVK  241 (465)
Q Consensus       234 ~~~~m~~~  241 (465)
                      .|..+.+.
T Consensus       327 ~f~~L~~~  334 (468)
T PF10300_consen  327 YFLRLLKE  334 (468)
T ss_pred             HHHHHHhc
Confidence            66666654

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=95.63  E-value=0.46  Score=44.13  Aligned_cols=65  Identities=12%  Similarity=-0.119  Sum_probs=33.6

Q ss_pred             CCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCH---HhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048269          141 YSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNE---IAYGWLIKGYCDVGDLIEASKIWNLMTD  205 (465)
Q Consensus       141 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~  205 (465)
                      .+...++.+..+|.+.|++++|+..|++...-.+-+.   .+|..+..+|...|+.++|+..+++..+
T Consensus        73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe  140 (453)
T PLN03098         73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR  140 (453)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3445555555555555555555555555442111122   2355555555555555555555555554

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=95.54  E-value=0.043  Score=32.72  Aligned_cols=39  Identities=5%  Similarity=-0.058  Sum_probs=24.5

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHH
Q 048269           76 TFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIA  114 (465)
Q Consensus        76 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l  114 (465)
                      ++..+...|.+.|++++|.++|+++.+..+.+...+..+
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~L   41 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRAL   41 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence            455666666666777777777766666666555555444

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=95.50  E-value=2.1  Score=39.64  Aligned_cols=143  Identities=13%  Similarity=0.107  Sum_probs=105.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH-HHHH
Q 048269          212 IDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTL-SSII  290 (465)
Q Consensus       212 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~li  290 (465)
                      ..+|...++.-.+..-.+.|..+|-+..+.++...++..+++++.-++ .|+...|.++|+--...  -||...| .-.+
T Consensus       397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl  473 (660)
T COG5107         397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL  473 (660)
T ss_pred             hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence            456777888888888889999999999988855448888999988776 56778899999865544  3344444 4566


Q ss_pred             HHHHhcCCHHHHHHHHHHhcC---CC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 048269          291 YGLLARGRLREAYKVVEEIEK---PD--ISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGH  359 (465)
Q Consensus       291 ~~~~~~~~~~~a~~~~~~~~~---~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~  359 (465)
                      ..+...++-..|..+|+....   .+  ...|..+|.-=..-|+...+..+=++|..  +.|...+.......+
T Consensus       474 ~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry  545 (660)
T COG5107         474 LFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRY  545 (660)
T ss_pred             HHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHH
Confidence            777888999999999986554   22  56788888887888888888888777774  356665555555555

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=95.48  E-value=1.4  Score=37.60  Aligned_cols=181  Identities=8%  Similarity=-0.068  Sum_probs=108.4

Q ss_pred             HHHHHHhcCChhHHHHHHHHHhhCCCC---ChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcC
Q 048269           80 MVDIIGKSRNIDLFWETLQEMGRRRLV---NDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQR  156 (465)
Q Consensus        80 l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~  156 (465)
                      =...-.+.|++++|.+.|+.+....+.   +..+.-.++.++.+.++++.|+...++....-.......|-.-|.+++..
T Consensus        40 ~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~  119 (254)
T COG4105          40 EGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYF  119 (254)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHh
Confidence            344556788899999999988876653   45567777788888889999988888877743222223344445544421


Q ss_pred             -------CCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHH
Q 048269          157 -------KLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDD  229 (465)
Q Consensus       157 -------~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~  229 (465)
                             .+...+...+..+.           .++.-|=.+.-...|......+...    =...=..+.+.|.+.|.+.
T Consensus       120 ~~i~~~~rDq~~~~~A~~~f~-----------~~i~ryPnS~Ya~dA~~~i~~~~d~----LA~~Em~IaryY~kr~~~~  184 (254)
T COG4105         120 FQIDDVTRDQSAARAAFAAFK-----------ELVQRYPNSRYAPDAKARIVKLNDA----LAGHEMAIARYYLKRGAYV  184 (254)
T ss_pred             ccCCccccCHHHHHHHHHHHH-----------HHHHHCCCCcchhhHHHHHHHHHHH----HHHHHHHHHHHHHHhcChH
Confidence                   23333333333332           1122121111122222222222110    0000125667899999999


Q ss_pred             HHHHHHHHHHHcCCCCCCcc---hHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 048269          230 EAMKVFQMMRVKRMDDLGLS---TYRIVIDWMCKRGKISQAYTMLEEMFKR  277 (465)
Q Consensus       230 ~A~~~~~~m~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~  277 (465)
                      .|..-++.|.+.  .|.+..   .+-.+..+|...|-.+.|.+.-.-+...
T Consensus       185 AA~nR~~~v~e~--y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N  233 (254)
T COG4105         185 AAINRFEEVLEN--YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN  233 (254)
T ss_pred             HHHHHHHHHHhc--cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence            999999999987  442444   4556678899999999998887766654

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=95.32  E-value=0.53  Score=42.71  Aligned_cols=97  Identities=10%  Similarity=0.031  Sum_probs=64.9

Q ss_pred             HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcCCHHHHHH
Q 048269          314 ISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAK  393 (465)
Q Consensus       314 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~  393 (465)
                      ..++..+..+|.+.+++..|++.-...+..+ ++|....   .+                    =..++...|+++.|+.
T Consensus       257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL---yR--------------------rG~A~l~~~e~~~A~~  312 (397)
T KOG0543|consen  257 LACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL---YR--------------------RGQALLALGEYDLARD  312 (397)
T ss_pred             HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH---HH--------------------HHHHHHhhccHHHHHH
Confidence            3457778888889999999998888887553 2233222   11                    1345688899999999


Q ss_pred             HHHHHHhCCCCCCHhhHHHHHHHHh-hcc-chHHHHHHHHHHHHc
Q 048269          394 YVERVMNRGVEVPRFDYNKFLHYYS-NEE-GVVMFEEVGKKLREV  436 (465)
Q Consensus       394 ~~~~m~~~~~~p~~~~~~~ll~~~~-~~g-~~~~a~~~~~~~~~~  436 (465)
                      .|+++++  +.|+......=+..|. +.. ..+...++|..|...
T Consensus       313 df~ka~k--~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k  355 (397)
T KOG0543|consen  313 DFQKALK--LEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAK  355 (397)
T ss_pred             HHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            9999987  6786665444444443 333 344557788888765

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=95.22  E-value=1.4  Score=39.34  Aligned_cols=130  Identities=11%  Similarity=0.233  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHc--C----CCHHHHHHHHHHhhcC----CCCCHHhHHHHHHHHHhcCCH
Q 048269          124 LKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQ--R----KLVVEAKYLILKLSEW----IKPNEIAYGWLIKGYCDVGDL  193 (465)
Q Consensus       124 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~----~~~~~a~~~~~~m~~~----~~~~~~~~~~li~~~~~~g~~  193 (465)
                      +++.+.+++.|.+.|+.-+..+|-+..-....  .    .....|..+|+.|++.    -.++-..+..|+..  ..++.
T Consensus        78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~  155 (297)
T PF13170_consen   78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV  155 (297)
T ss_pred             HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence            45667788899999888888777654433333  2    2356788999999822    23455566666554  33333


Q ss_pred             ----HHHHHHHHHHHHCCCCCcHH--HHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCCCcchHHHHHH
Q 048269          194 ----IEASKIWNLMTDEGFEPSID--VVDKMIETFFKINK--DDEAMKVFQMMRVKRMDDLGLSTYRIVID  256 (465)
Q Consensus       194 ----~~a~~~~~~m~~~g~~~~~~--~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~~~~~~~~~~li~  256 (465)
                          +.++.+|+.+.+.|+..+-.  ....++..+....+  ...+.++++.+.+.|+++ ....|..+.-
T Consensus       156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~ki-k~~~yp~lGl  225 (297)
T PF13170_consen  156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKI-KYMHYPTLGL  225 (297)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCcc-ccccccHHHH
Confidence                56778888888878765432  33333333222222  447888888899888887 6555655443

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=95.21  E-value=0.36  Score=43.74  Aligned_cols=96  Identities=19%  Similarity=0.038  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHH-HHHHHHHH
Q 048269          143 LEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSID-VVDKMIET  221 (465)
Q Consensus       143 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~-~~~~li~~  221 (465)
                      ..+++.+.-++.+.+++..|++.-++...-.++|+...--=..++...|+++.|+..|+.+++.  .|+.. +-+.++.+
T Consensus       257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l  334 (397)
T KOG0543|consen  257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKL  334 (397)
T ss_pred             HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHH
Confidence            3445566667777777777777777766444666666666667777777777777777777764  44433 33344444


Q ss_pred             HHhcCCH-HHHHHHHHHHHH
Q 048269          222 FFKINKD-DEAMKVFQMMRV  240 (465)
Q Consensus       222 ~~~~g~~-~~A~~~~~~m~~  240 (465)
                      .-+..+. +...++|..|-.
T Consensus       335 ~~k~~~~~~kekk~y~~mF~  354 (397)
T KOG0543|consen  335 KQKIREYEEKEKKMYANMFA  354 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHhh
Confidence            3333333 334566666654

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=95.13  E-value=4.5  Score=42.24  Aligned_cols=77  Identities=22%  Similarity=0.262  Sum_probs=46.4

Q ss_pred             HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCHhhH---HHHHHHHHhcCCHHH
Q 048269          256 DWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEKPDISLY---HGLIKGLLRLRRARE  332 (465)
Q Consensus       256 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~li~~~~~~~~~~~  332 (465)
                      ..+.....+++|.-.|+..-+         ..-.+.+|..+|++.+|..+..++..+-....   ..|+.-+...++.-+
T Consensus       947 ~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~e 1017 (1265)
T KOG1920|consen  947 DHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYE 1017 (1265)
T ss_pred             HHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchh
Confidence            334445566666655554322         12345667777777777777777666322222   556666777777777


Q ss_pred             HHHHHHHHH
Q 048269          333 ATQVFREMI  341 (465)
Q Consensus       333 a~~~~~~m~  341 (465)
                      |-++..+..
T Consensus      1018 Aa~il~e~~ 1026 (1265)
T KOG1920|consen 1018 AAKILLEYL 1026 (1265)
T ss_pred             HHHHHHHHh
Confidence            777777764

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=95.02  E-value=2.4  Score=37.65  Aligned_cols=122  Identities=11%  Similarity=-0.029  Sum_probs=62.5

Q ss_pred             HhcCChhHHHHHHHHHhhCC-CCChHH-------HHHHHHHHHhcC-CHHHHHHHHHHhhhC--------CCCCCH----
Q 048269           85 GKSRNIDLFWETLQEMGRRR-LVNDKT-------FKIALMTLAEVR-ELKKMVNFFHIMNDC--------GCEYSL----  143 (465)
Q Consensus        85 ~~~g~~~~a~~~~~~~~~~~-~~~~~~-------~~~l~~~~~~~~-~~~~a~~~~~~~~~~--------~~~~~~----  143 (465)
                      .+.|+++.|..++.+..... ..++..       +-.+.......+ +++.|...+++..+.        ...|+.    
T Consensus         4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr   83 (278)
T PF08631_consen    4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR   83 (278)
T ss_pred             hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence            46788888888888776544 222222       222222333444 776666666554432        112222    


Q ss_pred             -HHHHHHHHHHHcCCCH---HHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048269          144 -EMLNKVVKTLCQRKLV---VEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDE  206 (465)
Q Consensus       144 -~~~~~ll~~~~~~~~~---~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  206 (465)
                       .++..++.+|...+..   ++|.++++.+....+-.+..+..-++.+.+.++.+.+.+.+..|...
T Consensus        84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~  150 (278)
T PF08631_consen   84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS  150 (278)
T ss_pred             HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence             2344555556555543   33444444444222223444444455555566666676766666654

It is also involved in sporulation [].

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=94.97  E-value=1.3  Score=34.45  Aligned_cols=40  Identities=15%  Similarity=0.069  Sum_probs=15.8

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHh
Q 048269          184 IKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFK  224 (465)
Q Consensus       184 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~  224 (465)
                      +..+...+.......+++.+...| ..+...++.++..|++
T Consensus        14 v~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~   53 (140)
T smart00299       14 VELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK   53 (140)
T ss_pred             HHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence            333333344444444444443333 1333344444444443

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=94.93  E-value=0.79  Score=35.35  Aligned_cols=82  Identities=5%  Similarity=-0.054  Sum_probs=54.2

Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCC---CChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHH
Q 048269           73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRL---VNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKV  149 (465)
Q Consensus        73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  149 (465)
                      ++..+-.-.....+.|++++|.+.|+.+..+-+   -...+.-.++.++.+.+++++|...+++..+....--...|-..
T Consensus         9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y   88 (142)
T PF13512_consen    9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY   88 (142)
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence            344444455566678888888888888877654   24567777888888888888888888888875422222334444


Q ss_pred             HHHHH
Q 048269          150 VKTLC  154 (465)
Q Consensus       150 l~~~~  154 (465)
                      +.+++
T Consensus        89 ~~gL~   93 (142)
T PF13512_consen   89 MRGLS   93 (142)
T ss_pred             HHHHH
Confidence            44444

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=94.91  E-value=0.38  Score=41.92  Aligned_cols=76  Identities=8%  Similarity=-0.007  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh------cCCCCCHHhHHHH
Q 048269          110 TFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLS------EWIKPNEIAYGWL  183 (465)
Q Consensus       110 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~------~~~~~~~~~~~~l  183 (465)
                      ++..++..+...|+++.+.+.++++.... +-+...|..++.+|.+.|+...|+..|+++.      .|+.|-..+....
T Consensus       155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y  233 (280)
T COG3629         155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY  233 (280)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence            34444555555555555555555555443 3444555555555555555555555555443      3444554444444


Q ss_pred             HHH
Q 048269          184 IKG  186 (465)
Q Consensus       184 i~~  186 (465)
                      ...
T Consensus       234 ~~~  236 (280)
T COG3629         234 EEI  236 (280)
T ss_pred             HHH
Confidence            443

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=94.66  E-value=1  Score=33.91  Aligned_cols=86  Identities=14%  Similarity=0.030  Sum_probs=46.0

Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHH---HHHHHHhc
Q 048269          221 TFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKR-GIEADNLTLSS---IIYGLLAR  296 (465)
Q Consensus       221 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~---li~~~~~~  296 (465)
                      +....|+.+.|++.|.+....  .|.....||.-..++.-.|+.++|++=+++..+. |.+ +.....+   -...|...
T Consensus        52 alaE~g~Ld~AlE~F~qal~l--~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~  128 (175)
T KOG4555|consen   52 ALAEAGDLDGALELFGQALCL--APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLL  128 (175)
T ss_pred             HHHhccchHHHHHHHHHHHHh--cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHh
Confidence            345556666666666665533  4445666666666666666666666666655543 221 2222222   22234555


Q ss_pred             CCHHHHHHHHHHh
Q 048269          297 GRLREAYKVVEEI  309 (465)
Q Consensus       297 ~~~~~a~~~~~~~  309 (465)
                      |+-+.|..-|+..
T Consensus       129 g~dd~AR~DFe~A  141 (175)
T KOG4555|consen  129 GNDDAARADFEAA  141 (175)
T ss_pred             CchHHHHHhHHHH
Confidence            6666666655544

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=94.56  E-value=3.5  Score=37.46  Aligned_cols=292  Identities=9%  Similarity=-0.004  Sum_probs=185.3

Q ss_pred             HHHhcCCCChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHH--HHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhc
Q 048269           44 QICNNFPLSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDI--IGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEV  121 (465)
Q Consensus        44 ~~l~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~  121 (465)
                      .+|..-..+...|.+.-... .  .-+..|..-.-.++.+  -.-.|+++.|.+-|+.|...--...--...|.-.--+.
T Consensus        91 GliAagAGda~lARkmt~~~-~--~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~  167 (531)
T COG3898          91 GLIAAGAGDASLARKMTARA-S--KLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRL  167 (531)
T ss_pred             hhhhhccCchHHHHHHHHHH-H--hhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhc
Confidence            44544455777777766554 1  1233455555555544  34569999999999999743111111233344444677


Q ss_pred             CCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh--cCCCCCHHh--HHHHHHHHHh---cCCHH
Q 048269          122 RELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLS--EWIKPNEIA--YGWLIKGYCD---VGDLI  194 (465)
Q Consensus       122 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~--~~~~~~~~~--~~~li~~~~~---~g~~~  194 (465)
                      |+.+.|..+-+..-+.- +.-...+...+...+..|+++.|+++++.-.  .-+.+++.-  -..|+.+-..   ..|..
T Consensus       168 GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~  246 (531)
T COG3898         168 GAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPA  246 (531)
T ss_pred             ccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChH
Confidence            99999998888876643 3345677889999999999999999999876  445555432  2233333221   23455


Q ss_pred             HHHHHHHHHHHCCCCCcHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 048269          195 EASKIWNLMTDEGFEPSIDV-VDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEE  273 (465)
Q Consensus       195 ~a~~~~~~m~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~  273 (465)
                      .|...-.+..+  +.||... -..-..++.+.|+..++-.+++.+-+....|   ..+  .+..+.+.|+.  +..-++.
T Consensus       247 ~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP---~ia--~lY~~ar~gdt--a~dRlkR  317 (531)
T COG3898         247 SARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP---DIA--LLYVRARSGDT--ALDRLKR  317 (531)
T ss_pred             HHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh---HHH--HHHHHhcCCCc--HHHHHHH
Confidence            55554444433  4565432 2344578899999999999999999874433   333  23344566654  3333333


Q ss_pred             HHHC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhcC--CCHhhHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCC
Q 048269          274 MFKR-GIEA-DNLTLSSIIYGLLARGRLREAYKVVEEIEK--PDISLYHGLIKGLL-RLRRAREATQVFREMIKRGCEPT  348 (465)
Q Consensus       274 m~~~-~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~-~~~~~~~a~~~~~~m~~~~~~p~  348 (465)
                      ..+. ..+| +......+..+-...|++..|..--+....  |....|-.|...-. ..|+-.++...+.+.++..-.|.
T Consensus       318 a~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPa  397 (531)
T COG3898         318 AKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPA  397 (531)
T ss_pred             HHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCc
Confidence            3221 1233 455666677888889999998887777766  77777777766543 45999999999988887644443

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=94.44  E-value=1.5  Score=32.99  Aligned_cols=87  Identities=5%  Similarity=-0.133  Sum_probs=51.6

Q ss_pred             HHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHH---HHHHHHHcCCCH
Q 048269           83 IIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLN---KVVKTLCQRKLV  159 (465)
Q Consensus        83 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~ll~~~~~~~~~  159 (465)
                      +++..|+.+.|++.|.+....-+....+||.-..++.-.|+.++|++-+++..+..-........   .-...|-..|+.
T Consensus        52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d  131 (175)
T KOG4555|consen   52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND  131 (175)
T ss_pred             HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence            55667777777777777766655566677777777777777777777777666632122222222   222234455666


Q ss_pred             HHHHHHHHHh
Q 048269          160 VEAKYLILKL  169 (465)
Q Consensus       160 ~~a~~~~~~m  169 (465)
                      +.|..=|+..
T Consensus       132 d~AR~DFe~A  141 (175)
T KOG4555|consen  132 DAARADFEAA  141 (175)
T ss_pred             HHHHHhHHHH
Confidence            6666555554

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.43  E-value=3.2  Score=36.84  Aligned_cols=154  Identities=6%  Similarity=-0.162  Sum_probs=95.7

Q ss_pred             HhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHH----HHHHHHHHcCCCHH
Q 048269           85 GKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEML----NKVVKTLCQRKLVV  160 (465)
Q Consensus        85 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~ll~~~~~~~~~~  160 (465)
                      .-.|++.+|-..++++.+.-+.+.-++...-.+|.-.|+.......++.+... ..+|...|    ..+.-++...|-++
T Consensus       114 ~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~  192 (491)
T KOG2610|consen  114 WGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD  192 (491)
T ss_pred             hccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence            34567777777777777766666666777777777788877777777777653 13343332    23334455678888


Q ss_pred             HHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048269          161 EAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDE---GFEPSIDVVDKMIETFFKINKDDEAMKVFQM  237 (465)
Q Consensus       161 ~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  237 (465)
                      +|++.-++..+-.+-|..+-.++....-..|++.++.++..+-...   +.-.-..-|=-..-.+...+.++.|+++|+.
T Consensus       193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~  272 (491)
T KOG2610|consen  193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR  272 (491)
T ss_pred             hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence            8888877776545667777777777777788888877765543221   0000111122223344556788888888865


Q ss_pred             HH
Q 048269          238 MR  239 (465)
Q Consensus       238 m~  239 (465)
                      =.
T Consensus       273 ei  274 (491)
T KOG2610|consen  273 EI  274 (491)
T ss_pred             HH
Confidence            43

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.37  E-value=6.3  Score=39.60  Aligned_cols=184  Identities=13%  Similarity=0.027  Sum_probs=119.6

Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 048269           73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKT  152 (465)
Q Consensus        73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~  152 (465)
                      .......-+..+.+..-++.|+.+.+.-....-.-..........+.+.|++++|...|-+-... +.|.     .++.-
T Consensus       333 ~ek~le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~k  406 (933)
T KOG2114|consen  333 IEKDLETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKK  406 (933)
T ss_pred             eeccHHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHH
Confidence            34455667788888888888877765432111112234455556677889999999988665542 2332     35666


Q ss_pred             HHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CcHHHHHHHHHHHHhcCCHHHH
Q 048269          153 LCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFE-PSIDVVDKMIETFFKINKDDEA  231 (465)
Q Consensus       153 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A  231 (465)
                      |....++.+-..+++.+...--.+...-..|+.+|.+.++.++-.++.+..- .|.. -|   ....+..+.+.+-.++|
T Consensus       407 fLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd---~e~al~Ilr~snyl~~a  482 (933)
T KOG2114|consen  407 FLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFD---VETALEILRKSNYLDEA  482 (933)
T ss_pred             hcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccceeee---HHHHHHHHHHhChHHHH
Confidence            6777778888888888883334566677889999999999998887776654 3321 12   34556666777777777


Q ss_pred             HHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 048269          232 MKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMF  275 (465)
Q Consensus       232 ~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  275 (465)
                      .-+-.....      +......+   +-..+++++|++++..+.
T Consensus       483 ~~LA~k~~~------he~vl~il---le~~~ny~eAl~yi~slp  517 (933)
T KOG2114|consen  483 ELLATKFKK------HEWVLDIL---LEDLHNYEEALRYISSLP  517 (933)
T ss_pred             HHHHHHhcc------CHHHHHHH---HHHhcCHHHHHHHHhcCC
Confidence            666554321      22333333   445688999999998763

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.32  E-value=1.3  Score=38.12  Aligned_cols=105  Identities=12%  Similarity=0.023  Sum_probs=80.6

Q ss_pred             HHhHHHHHHHHHhcCChhHHHHHHHHHhhCCC---CChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-C-CCCHHHHHH
Q 048269           74 SITFNRMVDIIGKSRNIDLFWETLQEMGRRRL---VNDKTFKIALMTLAEVRELKKMVNFFHIMNDCG-C-EYSLEMLNK  148 (465)
Q Consensus        74 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~-~~~~~~~~~  148 (465)
                      ...|+.-+..+ +.|++..|...|....+..+   ..+.++..|..++...|++++|..+|..+.+.- - +--+..+-.
T Consensus       142 ~~~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK  220 (262)
T COG1729         142 TKLYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK  220 (262)
T ss_pred             hHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence            34677666555 56669999999999988766   356788899999999999999999999887732 1 223466777


Q ss_pred             HHHHHHcCCCHHHHHHHHHHhhcCCCCCHHh
Q 048269          149 VVKTLCQRKLVVEAKYLILKLSEWIKPNEIA  179 (465)
Q Consensus       149 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~  179 (465)
                      |..+..+.|+.++|...|+++....|-+..+
T Consensus       221 lg~~~~~l~~~d~A~atl~qv~k~YP~t~aA  251 (262)
T COG1729         221 LGVSLGRLGNTDEACATLQQVIKRYPGTDAA  251 (262)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence            8888899999999999999998555544443

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.32  E-value=1.8  Score=37.29  Aligned_cols=97  Identities=12%  Similarity=0.020  Sum_probs=74.2

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC---CHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCC---CCHHhHH
Q 048269          108 DKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEY---SLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIK---PNEIAYG  181 (465)
Q Consensus       108 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~---~~~~~~~  181 (465)
                      ...|+..+.. .+.|++..|...|....+.. +-   ....+--|..++...|+++.|..+|..+....+   --+..+-
T Consensus       142 ~~~Y~~A~~~-~ksgdy~~A~~~F~~fi~~Y-P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdall  219 (262)
T COG1729         142 TKLYNAALDL-YKSGDYAEAEQAFQAFIKKY-PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALL  219 (262)
T ss_pred             hHHHHHHHHH-HHcCCHHHHHHHHHHHHHcC-CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHH
Confidence            3466666654 56678999999999988853 22   223455588999999999999999999883322   2346677


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHC
Q 048269          182 WLIKGYCDVGDLIEASKIWNLMTDE  206 (465)
Q Consensus       182 ~li~~~~~~g~~~~a~~~~~~m~~~  206 (465)
                      -|.....+.|+.++|...|++..+.
T Consensus       220 Klg~~~~~l~~~d~A~atl~qv~k~  244 (262)
T COG1729         220 KLGVSLGRLGNTDEACATLQQVIKR  244 (262)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            7888888999999999999999886

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=94.22  E-value=0.65  Score=40.51  Aligned_cols=77  Identities=19%  Similarity=0.179  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCcHHHHHHHH
Q 048269          145 MLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTD-----EGFEPSIDVVDKMI  219 (465)
Q Consensus       145 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~~~~~li  219 (465)
                      ++..++..+...|+++.+.+.++++..-.+-+...|..+|.+|.+.|+...|+..|+.+.+     .|+.|...+.....
T Consensus       155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~  234 (280)
T COG3629         155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE  234 (280)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence            3455566666667777777777776655566667777777777777777777777766654     46666665555444


Q ss_pred             HH
Q 048269          220 ET  221 (465)
Q Consensus       220 ~~  221 (465)
                      ..
T Consensus       235 ~~  236 (280)
T COG3629         235 EI  236 (280)
T ss_pred             HH
Confidence            44

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=94.01  E-value=2.6  Score=33.73  Aligned_cols=136  Identities=10%  Similarity=0.096  Sum_probs=82.5

Q ss_pred             HHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 048269          128 VNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEG  207 (465)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g  207 (465)
                      .++++.+.+.+++|+...+..+++.+.+.|++....+++.-   ++-+|.......+-.+.  +....+.++=-+|.++ 
T Consensus        14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~---~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR-   87 (167)
T PF07035_consen   14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQY---HVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR-   87 (167)
T ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhh---cccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH-
Confidence            45566667778888888888888888888887666555543   33444444333332222  2223333333333332 


Q ss_pred             CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 048269          208 FEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKR  277 (465)
Q Consensus       208 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  277 (465)
                         =...+..+++.+...|++-+|.++.+.....     +......++.+-.+.+|...-..+++-....
T Consensus        88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~~~~-----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~  149 (167)
T PF07035_consen   88 ---LGTAYEEIIEVLLSKGQVLEALRYARQYHKV-----DSVPARKFLEAAANSNDDQLFYAVFRFFEER  149 (167)
T ss_pred             ---hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc-----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence               0113567778888889999888888765322     3334456777777777777666666655543

>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex

Probab=93.97  E-value=7.2  Score=39.10  Aligned_cols=43  Identities=14%  Similarity=0.078  Sum_probs=29.4

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhc
Q 048269           79 RMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEV  121 (465)
Q Consensus        79 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~  121 (465)
                      .+|-.|.|+|++++|.++.......-......|...+..+...
T Consensus       116 a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s  158 (613)
T PF04097_consen  116 ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASS  158 (613)
T ss_dssp             HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTT
T ss_pred             HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhC
Confidence            4778889999999999999655443334445677777777664

It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=93.97  E-value=0.21  Score=29.73  Aligned_cols=37  Identities=3%  Similarity=-0.075  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHH
Q 048269          110 TFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLN  147 (465)
Q Consensus       110 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  147 (465)
                      ++..+...+.+.|++++|+++|+++.+.. +-|...+.
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~   39 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWR   39 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHH
Confidence            45556666666666666666666666643 33444443

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=93.95  E-value=1.3  Score=45.91  Aligned_cols=199  Identities=13%  Similarity=0.133  Sum_probs=128.2

Q ss_pred             CCCCHHHHHHHHhcCCCChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHH
Q 048269           35 FNLTHEFFLQICNNFPLSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIA  114 (465)
Q Consensus        35 ~~~~~~~~~~~l~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l  114 (465)
                      --.+.++...+......+|+.-+.+++.. ...++   +..-|  .|+.|  .++++.|+.-+..+.      ...|.-.
T Consensus       849 gtYDl~Lal~VAq~SqkDPkEyLP~L~el-~~m~~---~~rkF--~ID~~--L~ry~~AL~hLs~~~------~~~~~e~  914 (1265)
T KOG1920|consen  849 GTYDLDLALLVAQKSQKDPKEYLPFLNEL-KKMET---LLRKF--KIDDY--LKRYEDALSHLSECG------ETYFPEC  914 (1265)
T ss_pred             cccchHHHHHHHHHhccChHHHHHHHHHH-hhchh---hhhhe--eHHHH--HHHHHHHHHHHHHcC------ccccHHH
Confidence            34577788888888888999999999886 32221   11111  12222  356777777776664      2235555


Q ss_pred             HHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHH----HHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhc
Q 048269          115 LMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVV----KTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDV  190 (465)
Q Consensus       115 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll----~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~  190 (465)
                      +..--+.+.+.+|+.++        .|+...+....    .-+...+.+++|.-.|+..-.        ...-+.+|...
T Consensus       915 ~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk--------lekAl~a~~~~  978 (1265)
T KOG1920|consen  915 KNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK--------LEKALKAYKEC  978 (1265)
T ss_pred             HHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc--------HHHHHHHHHHh
Confidence            66666778888888876        45555544444    444556788888877776541        23456788888


Q ss_pred             CCHHHHHHHHHHHHHCCCCCcHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHH
Q 048269          191 GDLIEASKIWNLMTDEGFEPSID--VVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAY  268 (465)
Q Consensus       191 g~~~~a~~~~~~m~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~  268 (465)
                      |+|++|+.+..++...   -+..  +-..|+.-+...+++-+|-++..+....   |  ...    +..|++...+++|.
T Consensus       979 ~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~--~~a----v~ll~ka~~~~eAl 1046 (1265)
T KOG1920|consen  979 GDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---P--EEA----VALLCKAKEWEEAL 1046 (1265)
T ss_pred             ccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---H--HHH----HHHHhhHhHHHHHH
Confidence            9999999988877532   1222  2256777888888888888888777654   2  222    34455666778887


Q ss_pred             HHHHHHH
Q 048269          269 TMLEEMF  275 (465)
Q Consensus       269 ~~~~~m~  275 (465)
                      ++.....
T Consensus      1047 rva~~~~ 1053 (1265)
T KOG1920|consen 1047 RVASKAK 1053 (1265)
T ss_pred             HHHHhcc
Confidence            7766544

>PRK11906 transcriptional regulator; Provisional

Probab=93.88  E-value=5.7  Score=37.29  Aligned_cols=130  Identities=7%  Similarity=-0.034  Sum_probs=72.7

Q ss_pred             HhH--HHHHHHHHhc-----CChhHHHHHHHHHh---hCCCCChHHHHHHHHHHHhc---------CCHHHHHHHHHHhh
Q 048269           75 ITF--NRMVDIIGKS-----RNIDLFWETLQEMG---RRRLVNDKTFKIALMTLAEV---------RELKKMVNFFHIMN  135 (465)
Q Consensus        75 ~~~--~~l~~~~~~~-----g~~~~a~~~~~~~~---~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~  135 (465)
                      ..|  ...+++..+.     ...+.|+.+|.+..   ..++.....|..+..++...         ....+|.+.-+...
T Consensus       252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv  331 (458)
T PRK11906        252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS  331 (458)
T ss_pred             cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence            445  5555555442     23457888899888   44433344555544443221         23445556666666


Q ss_pred             hCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048269          136 DCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTD  205 (465)
Q Consensus       136 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  205 (465)
                      +.+ +-|......+..+..-.++++.|..+|++...-.+-...+|....-...-.|+.++|.+.+++..+
T Consensus       332 eld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr  400 (458)
T PRK11906        332 DIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ  400 (458)
T ss_pred             hcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            655 556666666666666666677777777776522233334444444444455777777777776544

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.88  E-value=2.5  Score=37.47  Aligned_cols=152  Identities=9%  Similarity=-0.063  Sum_probs=96.0

Q ss_pred             cCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCcHHHHHHHHHHHHhcCCHHHH
Q 048269          155 QRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDE---GFEPSIDVVDKMIETFFKINKDDEA  231 (465)
Q Consensus       155 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~~~~~~~~~li~~~~~~g~~~~A  231 (465)
                      ..|...+|-..++++....|.|..++..-=.+|.-.|+.......+++..-.   +++..+.+-....-++...|-+++|
T Consensus       115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA  194 (491)
T KOG2610|consen  115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA  194 (491)
T ss_pred             ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence            4567777777778877667778888887788888888888777777777643   2322334444455566677888888


Q ss_pred             HHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048269          232 MKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIE---ADNLTLSSIIYGLLARGRLREAYKVVEE  308 (465)
Q Consensus       232 ~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~  308 (465)
                      ++.-++..+-  .+.|.-.-.+....+-..|+..++.++..+-...--.   .-...|-...-.+...+.++.|+++|+.
T Consensus       195 Ek~A~ralqi--N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~  272 (491)
T KOG2610|consen  195 EKQADRALQI--NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR  272 (491)
T ss_pred             HHHHHhhccC--CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence            8887776644  3435556666777777788888887776654322100   0111122223334555777788887764

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=93.56  E-value=0.19  Score=28.27  Aligned_cols=26  Identities=15%  Similarity=0.057  Sum_probs=19.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048269          374 FDTIFVGGLVKAGKSLDAAKYVERVM  399 (465)
Q Consensus       374 ~~~~li~~~~~~g~~~~A~~~~~~m~  399 (465)
                      +|..|...|.+.|++++|++++++..
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            35677788888888888888888854

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=93.40  E-value=2  Score=35.33  Aligned_cols=71  Identities=8%  Similarity=0.027  Sum_probs=32.7

Q ss_pred             hHHHHHHHHHhhCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhhh---CCCCCCHHHHHHHHHHHHcCCCHHHH
Q 048269           91 DLFWETLQEMGRRRLV-NDKTFKIALMTLAEVRELKKMVNFFHIMND---CGCEYSLEMLNKVVKTLCQRKLVVEA  162 (465)
Q Consensus        91 ~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~ll~~~~~~~~~~~a  162 (465)
                      +.|.+.|-.+...+.. ++.....+...|. ..+.++++.++....+   .+-.+|+..+.+|+..+.+.|+.+.|
T Consensus       123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A  197 (203)
T PF11207_consen  123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA  197 (203)
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence            3455555555444442 2333333333332 4455555555554444   11234555555555555555555544

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=93.26  E-value=5.7  Score=35.28  Aligned_cols=62  Identities=6%  Similarity=0.201  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHhcCCHH---HHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 048269          214 VVDKMIETFFKINKDD---EAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKR  277 (465)
Q Consensus       214 ~~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  277 (465)
                      ++..++.+|...+..+   +|.++++.+...  .|..+..+-.-+..+.+.++.+.+.+.+..|...
T Consensus        86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e--~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~  150 (278)
T PF08631_consen   86 ILRLLANAYLEWDTYESVEKALNALRLLESE--YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS  150 (278)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh--CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence            4455555555555433   344444444433  2212344444455555566666666666666654

It is also involved in sporulation [].

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=93.22  E-value=0.11  Score=28.82  Aligned_cols=30  Identities=10%  Similarity=0.171  Sum_probs=17.3

Q ss_pred             HHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHH
Q 048269           62 YTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFW   94 (465)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~   94 (465)
                      .++..+|.   |..+|+.+...|...|++++|+
T Consensus         4 kAie~~P~---n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    4 KAIELNPN---NAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             HHHHHCCC---CHHHHHHHHHHHHHCcCHHhhc
Confidence            33344444   6666666666666666666654

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=92.99  E-value=4.9  Score=33.83  Aligned_cols=187  Identities=13%  Similarity=0.038  Sum_probs=81.8

Q ss_pred             CChhHHHHHHHHHhhCCCC--ChHHHHHHHHHHHhcCCHHHHHHHHHHhhhC-CCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 048269           88 RNIDLFWETLQEMGRRRLV--NDKTFKIALMTLAEVRELKKMVNFFHIMNDC-GCEYSLEMLNKVVKTLCQRKLVVEAKY  164 (465)
Q Consensus        88 g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~  164 (465)
                      +....+...+.........  ....+......+...+.+..+...+...... ........+......+...+....+.+
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (291)
T COG0457          37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE  116 (291)
T ss_pred             hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence            3344444444444433332  2344555555555555555555555555431 113333444444445555555555555


Q ss_pred             HHHHhhcCCCCCHHhHHHHHH-HHHhcCCHHHHHHHHHHHHHCCC--CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048269          165 LILKLSEWIKPNEIAYGWLIK-GYCDVGDLIEASKIWNLMTDEGF--EPSIDVVDKMIETFFKINKDDEAMKVFQMMRVK  241 (465)
Q Consensus       165 ~~~~m~~~~~~~~~~~~~li~-~~~~~g~~~~a~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  241 (465)
                      .+.........+......... .+...|+++.+...+........  ......+......+...++.+.+...+......
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  196 (291)
T COG0457         117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL  196 (291)
T ss_pred             HHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh
Confidence            555554211111111222222 45555555555555555533110  012222222233344445555555555555443


Q ss_pred             CCCCC-CcchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048269          242 RMDDL-GLSTYRIVIDWMCKRGKISQAYTMLEEMFK  276 (465)
Q Consensus       242 ~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  276 (465)
                        .+. ....+..+...+...++++.+...+.....
T Consensus       197 --~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  230 (291)
T COG0457         197 --NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALE  230 (291)
T ss_pred             --CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHh
Confidence              221 133344444444444455555555544443

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=92.99  E-value=1.7  Score=35.50  Aligned_cols=97  Identities=11%  Similarity=-0.033  Sum_probs=52.2

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHhcC------CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 048269          286 LSSIIYGLLARGRLREAYKVVEEIEK------PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGH  359 (465)
Q Consensus       286 ~~~li~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~  359 (465)
                      +..+...|.+.|+.+.|.+.|.++.+      .-...+-.+|......+++..+...+.+....--.+.......=+.++
T Consensus        39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~  118 (177)
T PF10602_consen   39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVY  118 (177)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence            44455555555666666555555554      122334456666666777777777666665432222222222222222


Q ss_pred             hcccCCCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048269          360 LGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMN  400 (465)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  400 (465)
                                        -.-.+...+++.+|.+.|-+...
T Consensus       119 ------------------~gL~~l~~r~f~~AA~~fl~~~~  141 (177)
T PF10602_consen  119 ------------------EGLANLAQRDFKEAAELFLDSLS  141 (177)
T ss_pred             ------------------HHHHHHHhchHHHHHHHHHccCc
Confidence                              11234567889998888776653

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF13929 mRNA_stabil: mRNA stabilisation

Probab=92.89  E-value=6.1  Score=34.61  Aligned_cols=137  Identities=9%  Similarity=0.097  Sum_probs=90.6

Q ss_pred             CChhHHHHHHHHHhhC-CC-CChHHHHHHHHHHHhc-C-CHHHHHHHHHHhhh-CCCCCCHHHHHHHHHHHHcCCCHHHH
Q 048269           88 RNIDLFWETLQEMGRR-RL-VNDKTFKIALMTLAEV-R-ELKKMVNFFHIMND-CGCEYSLEMLNKVVKTLCQRKLVVEA  162 (465)
Q Consensus        88 g~~~~a~~~~~~~~~~-~~-~~~~~~~~l~~~~~~~-~-~~~~a~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~a  162 (465)
                      ..+.+|+.+|+...-. .+ .++.+...+++..... + ....--++.+-+.. .|-.++..+...++..++..+++.+-
T Consensus       142 ~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl  221 (292)
T PF13929_consen  142 KIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKL  221 (292)
T ss_pred             HHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHH
Confidence            3456777777743322 23 5777777777777662 2 22222233333332 33467788888889999999999999


Q ss_pred             HHHHHHhh--cCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH-----HHHCCCCCcHHHHHHHHHHHHh
Q 048269          163 KYLILKLS--EWIKPNEIAYGWLIKGYCDVGDLIEASKIWNL-----MTDEGFEPSIDVVDKMIETFFK  224 (465)
Q Consensus       163 ~~~~~~m~--~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~-----m~~~g~~~~~~~~~~li~~~~~  224 (465)
                      .++++.-.  .+...|...|..+|+.....||..-..++.++     +++.|+..+...-.++-+.+-+
T Consensus       222 ~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~~  290 (292)
T PF13929_consen  222 FQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFKK  290 (292)
T ss_pred             HHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHHh
Confidence            99988877  35667888899999999999998877776654     2445667776666665555443

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=92.69  E-value=7.3  Score=35.89  Aligned_cols=201  Identities=11%  Similarity=0.048  Sum_probs=108.2

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCC----CCCHHHHHHHHHHH
Q 048269          218 MIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGI----EADNLTLSSIIYGL  293 (465)
Q Consensus       218 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~----~~~~~~~~~li~~~  293 (465)
                      ...+.-+.|+|+...+........  .+ +...+.++...  +.++.+++...++.....-.    ......|.......
T Consensus         4 ~~eaaWrl~~Wd~l~~~~~~~~~~--~~-~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l   78 (352)
T PF02259_consen    4 AAEAAWRLGDWDLLEEYLSQSNED--SP-EYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSL   78 (352)
T ss_pred             HHHHHHhcCChhhHHHHHhhccCC--Ch-hHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence            356777888888866655544322  22 34444444433  77888888888877664310    01122233333333


Q ss_pred             HhcCCHHHHHHHHHHhcCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccC-CCCCCCch
Q 048269          294 LARGRLREAYKVVEEIEKPDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRG-RKGPDPLV  372 (465)
Q Consensus       294 ~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-~~~~~~~~  372 (465)
                      .+...+.+..++.+-.......           ..+.....+.|++=.. ...++..++..++..-...-. ........
T Consensus        79 ~~lq~L~Elee~~~~~~~~~~~-----------~~~~~~l~~~W~~Rl~-~~~~~~~~~~~il~~R~~~l~~~~~~~~~~  146 (352)
T PF02259_consen   79 VKLQQLVELEEIIELKSNLSQN-----------PQDLKSLLKRWRSRLP-NMQDDFSVWEPILSLRRLVLSLILLPEELA  146 (352)
T ss_pred             HHHhHHHHHHHHHHHHHhhccc-----------HHHHHHHHHHHHHHHH-HhccchHHHHHHHHHHHHHHhcccchhHHH
Confidence            3333333333332222110000           1112222333332221 345566666555543211111 01122345


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHhhHHHHHHHHhhccchHHHHHHHHHHHH
Q 048269          373 NFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEV---PRFDYNKFLHYYSNEEGVVMFEEVGKKLRE  435 (465)
Q Consensus       373 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  435 (465)
                      .+|..+...+.+.|.++.|...+.++...+...   ++.+.-.-.+.+...|+.++|...++...+
T Consensus       147 ~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~  212 (352)
T PF02259_consen  147 ETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK  212 (352)
T ss_pred             HHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            678888999999999999999999998743221   334444556677788999999999998888

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=92.67  E-value=3.5  Score=31.26  Aligned_cols=135  Identities=14%  Similarity=0.186  Sum_probs=64.3

Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHH
Q 048269          189 DVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAY  268 (465)
Q Consensus       189 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~  268 (465)
                      -.|..++..++..+....   .+..-+|.+|--....-+-+...++++.+-+-   - |...          .|++....
T Consensus        14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki---F-Dis~----------C~NlKrVi   76 (161)
T PF09205_consen   14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI---F-DISK----------CGNLKRVI   76 (161)
T ss_dssp             HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S--GGG-----------S-THHHH
T ss_pred             HhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh---c-Cchh----------hcchHHHH
Confidence            346666666666666553   24455555555555555555555555544321   1 2211          12222222


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 048269          269 TMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK---PDISLYHGLIKGLLRLRRAREATQVFREMIKRGC  345 (465)
Q Consensus       269 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~  345 (465)
                      ..+-.+   |  .+.......+..+...|+-+.-.++..++.+   +++...-.+..+|.+.|+..++.+++++.-+.|+
T Consensus        77 ~C~~~~---n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~  151 (161)
T PF09205_consen   77 ECYAKR---N--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL  151 (161)
T ss_dssp             HHHHHT---T-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred             HHHHHh---c--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence            222111   1  1223344445556666666666666666652   6666666666677777777777777777666664

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=92.55  E-value=5.4  Score=33.20  Aligned_cols=183  Identities=11%  Similarity=0.049  Sum_probs=92.1

Q ss_pred             CChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 048269           88 RNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLIL  167 (465)
Q Consensus        88 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~  167 (465)
                      |-+.-|.-=|.+.....+.-+.+||-+.-.+...|+++.|.+.|+...+.+..-+-...|.-|. +.-.|++..|.+=+.
T Consensus        79 GL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~~  157 (297)
T COG4785          79 GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDLL  157 (297)
T ss_pred             hHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHHH
Confidence            3344444445555555554556788888888888888888888888777653323233333332 234577777776666


Q ss_pred             HhhcCCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCC-
Q 048269          168 KLSEWIKPN--EIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIET-FFKINKDDEAMKVFQMMRVKRM-  243 (465)
Q Consensus       168 ~m~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~~~-  243 (465)
                      +.-...+.|  ...|--++.   ..-++.+|..-+.+--+   ..|..-|...|-. |...=..+.+.+-...--..+- 
T Consensus       158 ~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~---~~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n~~  231 (297)
T COG4785         158 AFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAE---KSDKEQWGWNIVEFYLGKISEETLMERLKADATDNTS  231 (297)
T ss_pred             HHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHH---hccHhhhhHHHHHHHHhhccHHHHHHHHHhhccchHH
Confidence            655222222  233333322   33345555543332221   1243334332222 2211111111111111100000 


Q ss_pred             --CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 048269          244 --DDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRG  278 (465)
Q Consensus       244 --~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~  278 (465)
                        .. -+.||--+..-+...|+.+.|..+|+-.+..+
T Consensus       232 ~Ae~-LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann  267 (297)
T COG4785         232 LAEH-LTETYFYLGKYYLSLGDLDEATALFKLAVANN  267 (297)
T ss_pred             HHHH-HHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence              00 24577778888888888888888888777663

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=92.45  E-value=0.34  Score=26.65  Aligned_cols=28  Identities=14%  Similarity=0.186  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048269          373 NFDTIFVGGLVKAGKSLDAAKYVERVMN  400 (465)
Q Consensus       373 ~~~~~li~~~~~~g~~~~A~~~~~~m~~  400 (465)
                      .+|..+...|...|++++|+..|++.++
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALE   29 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence            4577788888899999999999988886

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=92.25  E-value=0.097  Score=41.09  Aligned_cols=83  Identities=12%  Similarity=0.173  Sum_probs=45.1

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcC
Q 048269          183 LIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRG  262 (465)
Q Consensus       183 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~  262 (465)
                      ++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++.       . +..-...++..|.+.|
T Consensus        13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~-~~yd~~~~~~~c~~~~   84 (143)
T PF00637_consen   13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------S-NNYDLDKALRLCEKHG   84 (143)
T ss_dssp             CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------S-SSS-CTHHHHHHHTTT
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------c-cccCHHHHHHHHHhcc
Confidence            4455555666666666666666555445566666666666666665666655541       1 2233344555555555


Q ss_pred             ChHHHHHHHHH
Q 048269          263 KISQAYTMLEE  273 (465)
Q Consensus       263 ~~~~a~~~~~~  273 (465)
                      .++.+.-++.+
T Consensus        85 l~~~a~~Ly~~   95 (143)
T PF00637_consen   85 LYEEAVYLYSK   95 (143)
T ss_dssp             SHHHHHHHHHC
T ss_pred             hHHHHHHHHHH
Confidence            55555555544

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=92.08  E-value=11  Score=35.71  Aligned_cols=80  Identities=14%  Similarity=0.129  Sum_probs=53.8

Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHH
Q 048269          178 IAYGWLIKGYCDVGDLIEASKIWNLMTDEG-FEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVID  256 (465)
Q Consensus       178 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~  256 (465)
                      .+-..|..++-+.|+.++|++.|++|.+.. ..-+..+...|+.++...+.+.++..++.+..+...+..-...|+..+-
T Consensus       260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALL  339 (539)
T PF04184_consen  260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALL  339 (539)
T ss_pred             hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHH
Confidence            333456666778899999999999987642 1113446778899999999999999999887543332212345666553


Q ss_pred             H
Q 048269          257 W  257 (465)
Q Consensus       257 ~  257 (465)
                      -
T Consensus       340 k  340 (539)
T PF04184_consen  340 K  340 (539)
T ss_pred             H
Confidence            3

The molecular function of this protein is uncertain.

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.04  E-value=0.91  Score=39.73  Aligned_cols=102  Identities=14%  Similarity=0.104  Sum_probs=72.5

Q ss_pred             CCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCC---CChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHH
Q 048269           68 PCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRL---VNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLE  144 (465)
Q Consensus        68 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  144 (465)
                      .|...+..+...++..-....++++++..+-++...--   ....+-...++.+.+ -+.++++.++..=...|+-||..
T Consensus        58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf  136 (418)
T KOG4570|consen   58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQF  136 (418)
T ss_pred             cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHc-cChHHHHHHHhCcchhccccchh
Confidence            35566777777777777778888888888777654321   111223333443333 36678888888888888888888


Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHhh
Q 048269          145 MLNKVVKTLCQRKLVVEAKYLILKLS  170 (465)
Q Consensus       145 ~~~~ll~~~~~~~~~~~a~~~~~~m~  170 (465)
                      +++.+|+.+.+.+++.+|.++...|.
T Consensus       137 ~~c~l~D~flk~~n~~~aa~vvt~~~  162 (418)
T KOG4570|consen  137 TFCLLMDSFLKKENYKDAASVVTEVM  162 (418)
T ss_pred             hHHHHHHHHHhcccHHHHHHHHHHHH
Confidence            88888888888888888888888876

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.97  E-value=5.4  Score=31.89  Aligned_cols=134  Identities=7%  Similarity=-0.005  Sum_probs=93.8

Q ss_pred             CCCCHHHHHHHHhcCCC-ChhHHHHHHHHHhhcCCCCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCC-CChH--
Q 048269           35 FNLTHEFFLQICNNFPL-SWRPVYLFFQYTQKAQPCFAH-NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRL-VNDK--  109 (465)
Q Consensus        35 ~~~~~~~~~~~l~~~~~-~~~~a~~~f~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~--  109 (465)
                      .+-+.+.+...|..... .++.|+.-|... ... |... -.-.--.........|+...|+..|.++-.... |-..  
T Consensus        55 as~sgd~flaAL~lA~~~k~d~Alaaf~~l-ekt-g~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd  132 (221)
T COG4649          55 ASKSGDAFLAALKLAQENKTDDALAAFTDL-EKT-GYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRD  132 (221)
T ss_pred             cccchHHHHHHHHHHHcCCchHHHHHHHHH-Hhc-CCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhH
Confidence            34466777777755544 788999999996 433 3332 222233445667888999999999999876554 3211  


Q ss_pred             -HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh
Q 048269          110 -TFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLS  170 (465)
Q Consensus       110 -~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~  170 (465)
                       .--.-.-.+...|.++....-.+-+-..+-+.....-..|.-+-.+.|++.+|.+.|..+.
T Consensus       133 ~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia  194 (221)
T COG4649         133 LARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIA  194 (221)
T ss_pred             HHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHH
Confidence             1112233457789999998888888776655556666778778889999999999999988

>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human

Probab=91.87  E-value=12  Score=37.27  Aligned_cols=155  Identities=12%  Similarity=0.075  Sum_probs=38.6

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC--CCHhhHHHHHHHHHhc
Q 048269          250 TYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK--PDISLYHGLIKGLLRL  327 (465)
Q Consensus       250 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~  327 (465)
                      .|..-+..+..+++..  ....+.+...-.-.+......++..|.+.|-.+.|..+.+.+-.  -...-|..-+..+.+.
T Consensus       374 lW~vai~yL~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~~~~~~g~AL~~~~ra  451 (566)
T PF07575_consen  374 LWQVAIGYLSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLLKEGRYGEALSWFIRA  451 (566)
T ss_dssp             THHHHHHHHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred             hHHHHHHHHHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHC
Confidence            3444444444333322  44444444443334556667777888888888888887776554  2233455555666666


Q ss_pred             CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHH--HHhcCCHHHHHHHHHHHHhCCCCC
Q 048269          328 RRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGG--LVKAGKSLDAAKYVERVMNRGVEV  405 (465)
Q Consensus       328 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~~~~p  405 (465)
                      |+...+-.+-..+.+.....+......++......   ..+.+....|..+=+.  ..+.|++.+|.+.+-.+...++.|
T Consensus       452 ~d~~~v~~i~~~ll~~~~~~~~~~~~~ll~~i~~~---~~~~~~L~fla~yreF~~~~~~~~~~~Aa~~Lv~Ll~~~~~P  528 (566)
T PF07575_consen  452 GDYSLVTRIADRLLEEYCNNGEPLDDDLLDNIGSP---MLLSQRLSFLAKYREFYELYDEGDFREAASLLVSLLKSPIAP  528 (566)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCHHHHHHHHHHHHHHHhcCCCcccHHHHHHhcch---hhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHCCCCCc
Confidence            66666555555554332222222222222211000   0011111111111111  134477777777777777666656


Q ss_pred             CHhh
Q 048269          406 PRFD  409 (465)
Q Consensus       406 ~~~~  409 (465)
                      ...-
T Consensus       529 k~f~  532 (566)
T PF07575_consen  529 KSFW  532 (566)
T ss_dssp             ----
T ss_pred             HHHH
Confidence            5443

Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=91.75  E-value=15  Score=36.45  Aligned_cols=183  Identities=10%  Similarity=-0.016  Sum_probs=106.2

Q ss_pred             hhHHHHHHHHHhhCCCCChHHHHHHHHH---HHhcCCHHHHHHHHHHhhh-------CCCCCCHHHHHHHHHHHHcCC--
Q 048269           90 IDLFWETLQEMGRRRLVNDKTFKIALMT---LAEVRELKKMVNFFHIMND-------CGCEYSLEMLNKVVKTLCQRK--  157 (465)
Q Consensus        90 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~ll~~~~~~~--  157 (465)
                      ...|.+.++.....|..........+..   .....+.+.|+.+|+.+.+       .|   .......+..+|.+..  
T Consensus       228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~  304 (552)
T KOG1550|consen  228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV  304 (552)
T ss_pred             hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence            4568888888777776443333333322   4466788889998888866       44   3334556666666643  


Q ss_pred             ---CHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHH--hcCCHHHH
Q 048269          158 ---LVVEAKYLILKLSEWIKPNEIAYGWLIKGYCD-VGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFF--KINKDDEA  231 (465)
Q Consensus       158 ---~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~--~~g~~~~A  231 (465)
                         +.+.|..++.+....-.|+....-..+..... ..+...|.++|....+.|.. ....+..++....  -..+.+.|
T Consensus       305 ~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~~A  383 (552)
T KOG1550|consen  305 EKIDYEKALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLELA  383 (552)
T ss_pred             ccccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHHHH
Confidence               56678888887764335555544443333333 34677888888888887732 3332322222222  23467788


Q ss_pred             HHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 048269          232 MKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGI  279 (465)
Q Consensus       232 ~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~  279 (465)
                      ..++.+.-+.| .| ....-...+..+.. ++++.+.-.+..+.+.|.
T Consensus       384 ~~~~k~aA~~g-~~-~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~  428 (552)
T KOG1550|consen  384 FAYYKKAAEKG-NP-SAAYLLGAFYEYGV-GRYDTALALYLYLAELGY  428 (552)
T ss_pred             HHHHHHHHHcc-Ch-hhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence            88888887776 22 21112222233333 667777777766666654

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=91.50  E-value=5.4  Score=30.89  Aligned_cols=85  Identities=6%  Similarity=-0.006  Sum_probs=62.1

Q ss_pred             HHHHHHHHhcCCC-ChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCh-HHHHHHHH
Q 048269           39 HEFFLQICNNFPL-SWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVND-KTFKIALM  116 (465)
Q Consensus        39 ~~~~~~~l~~~~~-~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~l~~  116 (465)
                      ...+..-...+.. +++.|...|+.+..+-|.-.-...+.-.++.+|.+.+++++|...+++..+.++.++ .-|...+.
T Consensus        11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~   90 (142)
T PF13512_consen   11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMR   90 (142)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHH
Confidence            3444444445544 899999999998555555556778888999999999999999999999999887432 34555555


Q ss_pred             HHHhcCC
Q 048269          117 TLAEVRE  123 (465)
Q Consensus       117 ~~~~~~~  123 (465)
                      +++....
T Consensus        91 gL~~~~~   97 (142)
T PF13512_consen   91 GLSYYEQ   97 (142)
T ss_pred             HHHHHHH
Confidence            5554433

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=91.46  E-value=0.45  Score=26.77  Aligned_cols=23  Identities=13%  Similarity=0.167  Sum_probs=11.3

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHH
Q 048269           77 FNRMVDIIGKSRNIDLFWETLQE   99 (465)
Q Consensus        77 ~~~l~~~~~~~g~~~~a~~~~~~   99 (465)
                      |+.|...|.+.|++++|++++++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~   24 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQ   24 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHH
Confidence            44455555555555555555554

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=91.21  E-value=0.28  Score=27.23  Aligned_cols=31  Identities=3%  Similarity=-0.011  Sum_probs=16.1

Q ss_pred             HHHhhCCCCChHHHHHHHHHHHhcCCHHHHH
Q 048269           98 QEMGRRRLVNDKTFKIALMTLAEVRELKKMV  128 (465)
Q Consensus        98 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  128 (465)
                      ++..+.++.+..+|+.+...+...|++++|+
T Consensus         3 ~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    3 KKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             HHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            3444444445555555555555555555543

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=91.15  E-value=0.57  Score=25.61  Aligned_cols=28  Identities=14%  Similarity=0.173  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048269          373 NFDTIFVGGLVKAGKSLDAAKYVERVMN  400 (465)
Q Consensus       373 ~~~~~li~~~~~~g~~~~A~~~~~~m~~  400 (465)
                      ..|..+...|...|++++|++.|++..+
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            3466677788888888888888888876

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF13929 mRNA_stabil: mRNA stabilisation

Probab=91.03  E-value=10  Score=33.26  Aligned_cols=137  Identities=13%  Similarity=0.132  Sum_probs=90.3

Q ss_pred             CCHHHHHHHHHHhh--cCCCCCHHhHHHHHHHHHh-cC-CHHHHHHHHHHHHH-CCCCCcHHHHHHHHHHHHhcCCHHHH
Q 048269          157 KLVVEAKYLILKLS--EWIKPNEIAYGWLIKGYCD-VG-DLIEASKIWNLMTD-EGFEPSIDVVDKMIETFFKINKDDEA  231 (465)
Q Consensus       157 ~~~~~a~~~~~~m~--~~~~~~~~~~~~li~~~~~-~g-~~~~a~~~~~~m~~-~g~~~~~~~~~~li~~~~~~g~~~~A  231 (465)
                      ..+.+|+++|+...  +.+--|..+...+++.... .+ ....-.++.+.+.. .|-.++..+...++..+++.++|.+-
T Consensus       142 ~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl  221 (292)
T PF13929_consen  142 KIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKL  221 (292)
T ss_pred             HHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHH
Confidence            34566777777443  2345566777777776665 22 23333444444443 24567888888899999999999999


Q ss_pred             HHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHH-----HHHCCCCCCHHHHHHHHHHH
Q 048269          232 MKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEE-----MFKRGIEADNLTLSSIIYGL  293 (465)
Q Consensus       232 ~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~-----m~~~~~~~~~~~~~~li~~~  293 (465)
                      .++++..........|...|..+|+.-...|+..-..++.++     +++.|+..+...-..+-..+
T Consensus       222 ~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF  288 (292)
T PF13929_consen  222 FQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELF  288 (292)
T ss_pred             HHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHH
Confidence            999888766522333788899999999999998777777654     33455666665555554443

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=90.76  E-value=9  Score=32.16  Aligned_cols=220  Identities=18%  Similarity=0.110  Sum_probs=158.9

Q ss_pred             cCCHHHHHHHHHHhhhCCCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHHhhc--CCCCCHHhHHHHHHHHHhcCCHHHHH
Q 048269          121 VRELKKMVNFFHIMNDCGCE-YSLEMLNKVVKTLCQRKLVVEAKYLILKLSE--WIKPNEIAYGWLIKGYCDVGDLIEAS  197 (465)
Q Consensus       121 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~~~~li~~~~~~g~~~~a~  197 (465)
                      .+....+...+......... .....+......+...+.+..+...+.....  ........+......+...+++..+.
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (291)
T COG0457          36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL  115 (291)
T ss_pred             HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence            45666666776666664322 1356777788888899999999999888763  45666777888888888889999999


Q ss_pred             HHHHHHHHCCCCCcHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCC---CCcchHHHHHHHHHhcCChHHHHHHHHH
Q 048269          198 KIWNLMTDEGFEPSIDVVDKMIE-TFFKINKDDEAMKVFQMMRVKRMDD---LGLSTYRIVIDWMCKRGKISQAYTMLEE  273 (465)
Q Consensus       198 ~~~~~m~~~g~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~  273 (465)
                      ..+.........+ ......... .+...|+++.|...+......  .|   .....+......+...++.+.+...+..
T Consensus       116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  192 (291)
T COG0457         116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALEL--DPELNELAEALLALGALLEALGRYEEALELLEK  192 (291)
T ss_pred             HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHH
Confidence            9999988754333 222223333 788999999999999998552  22   1333444444556778899999999999


Q ss_pred             HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC--CC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048269          274 MFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK--PD-ISLYHGLIKGLLRLRRAREATQVFREMIKR  343 (465)
Q Consensus       274 m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  343 (465)
                      ............+..+...+...++.+.+...+.....  ++ ...+..+...+...+..+.+...+......
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (291)
T COG0457         193 ALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL  265 (291)
T ss_pred             HHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            88763321467778888888999999999999998887  43 344445555555667789999888888754

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=90.50  E-value=1.5  Score=35.73  Aligned_cols=63  Identities=11%  Similarity=-0.104  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh--hHHHHHHHHhhccchHHHHHHHHHHHHc
Q 048269          374 FDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRF--DYNKFLHYYSNEEGVVMFEEVGKKLREV  436 (465)
Q Consensus       374 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~  436 (465)
                      .+..+...|++.|+.++|.+.|.++.+....+...  .+-.+++...-.+++..+...+.+....
T Consensus        38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~  102 (177)
T PF10602_consen   38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL  102 (177)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            34567788899999999999999999865555443  6778888888899999999988887765

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=90.38  E-value=7.6  Score=30.73  Aligned_cols=51  Identities=6%  Similarity=-0.104  Sum_probs=23.6

Q ss_pred             hcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048269           86 KSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMND  136 (465)
Q Consensus        86 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  136 (465)
                      +.++.+++..++..+.-..+-....-..-...+.+.|++.+|+.+|+.+.+
T Consensus        22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~   72 (160)
T PF09613_consen   22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEE   72 (160)
T ss_pred             ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence            344555555555555443332222222222334455555555555555544

>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]

Probab=90.22  E-value=12  Score=32.88  Aligned_cols=33  Identities=18%  Similarity=0.076  Sum_probs=19.2

Q ss_pred             HHHHhhcCCCCchhHHhhhhhCCCCCCHHHHHHH
Q 048269           12 CTILYQQQYSPESRLHSSLSSCNFNLTHEFFLQI   45 (465)
Q Consensus        12 ~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~   45 (465)
                      ..++.... ..-..+...|++.|..++..-|..+
T Consensus        36 vq~~~~~~-gdle~vak~ldssg~~l~~~rYgd~   68 (412)
T KOG2297|consen   36 VQGLEDNA-GDLELVAKSLDSSGNDLDYRRYGDI   68 (412)
T ss_pred             HHHHHhcC-ccHHHHHHHHHhccccccHHHHHHH
Confidence            33444333 3444577788888888776555443

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.08  E-value=11  Score=32.10  Aligned_cols=206  Identities=13%  Similarity=0.119  Sum_probs=104.8

Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 048269           73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKT  152 (465)
Q Consensus        73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~  152 (465)
                      -...|..-..+|....++++|...+.+..+---.+..-|+       ..+.++.|.-+.+++.+.  +--...|+.....
T Consensus        30 aas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~l  100 (308)
T KOG1585|consen   30 AASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASEL  100 (308)
T ss_pred             hHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHH
Confidence            3556667778888899999999988877632111211121       123345555555555542  1223345666677


Q ss_pred             HHcCCCHHHHHHHHHHhh---cCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC---C--CCCcHHHHHHHHHHHHh
Q 048269          153 LCQRKLVVEAKYLILKLS---EWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDE---G--FEPSIDVVDKMIETFFK  224 (465)
Q Consensus       153 ~~~~~~~~~a~~~~~~m~---~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g--~~~~~~~~~~li~~~~~  224 (465)
                      |..+|..+.|-..+++.-   +++.|                  +.|+++|.+...-   +  .+.-...+...-+.+++
T Consensus       101 Y~E~GspdtAAmaleKAak~lenv~P------------------d~AlqlYqralavve~~dr~~ma~el~gk~sr~lVr  162 (308)
T KOG1585|consen  101 YVECGSPDTAAMALEKAAKALENVKP------------------DDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVR  162 (308)
T ss_pred             HHHhCCcchHHHHHHHHHHHhhcCCH------------------HHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhh
Confidence            888888887777776643   43444                  4444444433220   0  01112233444455666


Q ss_pred             cCCHHHHHHHHHHHHHc----CCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcC
Q 048269          225 INKDDEAMKVFQMMRVK----RMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRG---IEADNLTLSSIIYGLLARG  297 (465)
Q Consensus       225 ~g~~~~A~~~~~~m~~~----~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~li~~~~~~~  297 (465)
                      ..++++|-..+..-...    .-.+.--..|-..|-.+.-..|+..|.+.++.--+.+   -.-+..+...|+.+| ..|
T Consensus       163 l~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~g  241 (308)
T KOG1585|consen  163 LEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEG  241 (308)
T ss_pred             hHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccC
Confidence            66666665554332110    0011011224444445555667777777776643322   112444555555554 345


Q ss_pred             CHHHHHHHH
Q 048269          298 RLREAYKVV  306 (465)
Q Consensus       298 ~~~~a~~~~  306 (465)
                      +.+++.+++
T Consensus       242 D~E~~~kvl  250 (308)
T KOG1585|consen  242 DIEEIKKVL  250 (308)
T ss_pred             CHHHHHHHH
Confidence            555554443

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.01  E-value=3.7  Score=36.12  Aligned_cols=103  Identities=17%  Similarity=0.139  Sum_probs=62.8

Q ss_pred             CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcC----CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcH
Q 048269          137 CGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEW----IKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSI  212 (465)
Q Consensus       137 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~  212 (465)
                      .|.+....+...++..-....+++.++.++-+++..    ..|+. +-.+.++.+.+ -+.++++.++..=++.|+-||-
T Consensus        58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dq  135 (418)
T KOG4570|consen   58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQ  135 (418)
T ss_pred             cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHHc-cChHHHHHHHhCcchhccccch
Confidence            344455555555655555566777777777766621    12221 22223333332 3556777777777777777787


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048269          213 DVVDKMIETFFKINKDDEAMKVFQMMRVK  241 (465)
Q Consensus       213 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~  241 (465)
                      .+++.+|+.+.+.+++.+|.++.-.|..+
T Consensus       136 f~~c~l~D~flk~~n~~~aa~vvt~~~~q  164 (418)
T KOG4570|consen  136 FTFCLLMDSFLKKENYKDAASVVTEVMMQ  164 (418)
T ss_pred             hhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            78888888888877777777776666554

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=89.95  E-value=18  Score=34.42  Aligned_cols=93  Identities=8%  Similarity=0.008  Sum_probs=54.1

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048269          211 SIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSII  290 (465)
Q Consensus       211 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li  290 (465)
                      |.....+++..+..+-.+.-.+.+..+|..-|-   +...|..++.+|..+ ..++-..+|+++.+..+. |...-..|+
T Consensus        65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e---~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa  139 (711)
T COG1747          65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE---SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA  139 (711)
T ss_pred             cchHHHHHHHHhccchHHHHHHHHHHHHHHhcc---hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence            444555666666666666666666666665532   455666777777666 456666777766665442 333333444


Q ss_pred             HHHHhcCCHHHHHHHHHHh
Q 048269          291 YGLLARGRLREAYKVVEEI  309 (465)
Q Consensus       291 ~~~~~~~~~~~a~~~~~~~  309 (465)
                      ..|.+ ++.+.+...|.++
T Consensus       140 ~~yEk-ik~sk~a~~f~Ka  157 (711)
T COG1747         140 DKYEK-IKKSKAAEFFGKA  157 (711)
T ss_pred             HHHHH-hchhhHHHHHHHH
Confidence            44443 5555665555544

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=89.85  E-value=15  Score=33.29  Aligned_cols=46  Identities=11%  Similarity=0.046  Sum_probs=21.0

Q ss_pred             HHhcCCHHHHHHHHHHhhhC--CCCCCHHHHHHHHHHHHcCCCHHHHH
Q 048269          118 LAEVRELKKMVNFFHIMNDC--GCEYSLEMLNKVVKTLCQRKLVVEAK  163 (465)
Q Consensus       118 ~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~  163 (465)
                      +....+.++|+..+..-...  +......+|..+..+.++.|.+++++
T Consensus        16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL   63 (518)
T KOG1941|consen   16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEML   63 (518)
T ss_pred             HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHH
Confidence            34445566666655544431  01112233444555555555555544

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=89.61  E-value=2.2  Score=30.15  Aligned_cols=44  Identities=16%  Similarity=0.172  Sum_probs=25.6

Q ss_pred             HHHHHHHHHhhCCC-CChHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 048269           92 LFWETLQEMGRRRL-VNDKTFKIALMTLAEVRELKKMVNFFHIMN  135 (465)
Q Consensus        92 ~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  135 (465)
                      ++.+-++.+...+. |++.+..+.+++|.+.+++..|+++|+.++
T Consensus        25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK   69 (103)
T cd00923          25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK   69 (103)
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            44555555555554 555666666666666666666666666555

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=89.59  E-value=9  Score=30.35  Aligned_cols=17  Identities=18%  Similarity=0.249  Sum_probs=7.9

Q ss_pred             hcCCHHHHHHHHHHHHH
Q 048269          189 DVGDLIEASKIWNLMTD  205 (465)
Q Consensus       189 ~~g~~~~a~~~~~~m~~  205 (465)
                      ..|+|.+|.++|+.+.+
T Consensus        56 ~r~~w~dA~rlLr~l~~   72 (160)
T PF09613_consen   56 VRGDWDDALRLLRELEE   72 (160)
T ss_pred             HhCCHHHHHHHHHHHhc
Confidence            44444444444444433

>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.36  E-value=29  Score=35.97  Aligned_cols=116  Identities=18%  Similarity=0.174  Sum_probs=66.7

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCcHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHcCCCCCCcchHHH
Q 048269          179 AYGWLIKGYCDVGDLIEASKIWNLMTDEG---FEPSIDVVDKMIETFFKINKD--DEAMKVFQMMRVKRMDDLGLSTYRI  253 (465)
Q Consensus       179 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g---~~~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~~~~~~~~~~~~~  253 (465)
                      -|..|+..|...|+.++|+++|.+....-   -.--..-+..+++-+.+.+..  +.++++-+......... ....+..
T Consensus       506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~-gi~Ift~  584 (877)
T KOG2063|consen  506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEA-GIQIFTS  584 (877)
T ss_pred             cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchh-heeeeec
Confidence            47788888999999999999998887631   011112233345544444444  55555555444332111 1111111


Q ss_pred             ------------HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048269          254 ------------VIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLA  295 (465)
Q Consensus       254 ------------li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  295 (465)
                                  .+-.|......+-+..+++.+....-.++....+.++..|+.
T Consensus       585 ~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e  638 (877)
T KOG2063|consen  585 EDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE  638 (877)
T ss_pred             cChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence                        223345566667777888887776666667777777776654

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=89.34  E-value=4.4  Score=33.37  Aligned_cols=78  Identities=12%  Similarity=-0.026  Sum_probs=49.8

Q ss_pred             HHcCCCHHHHHHHHHHhh-cCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCcHHHHHHHHHHHHhcCCH
Q 048269          153 LCQRKLVVEAKYLILKLS-EWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDE---GFEPSIDVVDKMIETFFKINKD  228 (465)
Q Consensus       153 ~~~~~~~~~a~~~~~~m~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~~~~~~~~~li~~~~~~g~~  228 (465)
                      +.+.|+ +.|.+.|-++. .+.--++.....|...|. ..|.+++..++....+.   +-.+|+..+..|++.+.+.|++
T Consensus       117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~  194 (203)
T PF11207_consen  117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY  194 (203)
T ss_pred             hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence            444454 56666676766 444445555555555444 56777777777776652   2356777888888888888887


Q ss_pred             HHHH
Q 048269          229 DEAM  232 (465)
Q Consensus       229 ~~A~  232 (465)
                      +.|.
T Consensus       195 e~AY  198 (203)
T PF11207_consen  195 EQAY  198 (203)
T ss_pred             hhhh
Confidence            7763

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=89.33  E-value=8.8  Score=29.90  Aligned_cols=52  Identities=8%  Similarity=-0.103  Sum_probs=27.8

Q ss_pred             hcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 048269           86 KSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDC  137 (465)
Q Consensus        86 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  137 (465)
                      ..++++++..+++.|.-..+.....-..-...+...|++.+|..+|+++.+.
T Consensus        22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~   73 (153)
T TIGR02561        22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSS   73 (153)
T ss_pred             hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence            3566666666666665443322222222233345666666666666666654

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=89.10  E-value=16  Score=32.67  Aligned_cols=150  Identities=14%  Similarity=0.200  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--c----CCHHHHHHHHHHhcC-------CCHhhHHHHHHHHHhcCC--
Q 048269          265 SQAYTMLEEMFKRGIEADNLTLSSIIYGLLA--R----GRLREAYKVVEEIEK-------PDISLYHGLIKGLLRLRR--  329 (465)
Q Consensus       265 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~--~----~~~~~a~~~~~~~~~-------~~~~~~~~li~~~~~~~~--  329 (465)
                      +....+++.|.+.|+.-+..+|-+.......  .    .....|..+++.|++       ++-.++..++..  ..++  
T Consensus        79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e  156 (297)
T PF13170_consen   79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE  156 (297)
T ss_pred             HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence            4456677788888877777666553333222  1    235677788888877       444555555544  2222  


Q ss_pred             --HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 048269          330 --AREATQVFREMIKRGCEPTMH-TYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVP  406 (465)
Q Consensus       330 --~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~  406 (465)
                        .+.+..+|+.+.+.|+..+.. -+.+-+-++.                   ..-.... ...+.++++.+.+.|+++.
T Consensus       157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~-------------------~~~~~~~-v~r~~~l~~~l~~~~~kik  216 (297)
T PF13170_consen  157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALS-------------------EGDDQEK-VARVIELYNALKKNGVKIK  216 (297)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhc-------------------cccchHH-HHHHHHHHHHHHHcCCccc
Confidence              456778888888878776533 2222222220                   0001112 5578889999999998887


Q ss_pred             HhhHHHHHHHHhhccc----hHHHHHHHHHHHHc
Q 048269          407 RFDYNKFLHYYSNEEG----VVMFEEVGKKLREV  436 (465)
Q Consensus       407 ~~~~~~ll~~~~~~g~----~~~a~~~~~~~~~~  436 (465)
                      ...|..+.-...-.+.    .+...++.+.+.+.
T Consensus       217 ~~~yp~lGlLall~~~~~~~~~~i~ev~~~L~~~  250 (297)
T PF13170_consen  217 YMHYPTLGLLALLEDPEEKIVEEIKEVIDELKEQ  250 (297)
T ss_pred             cccccHHHHHHhcCCchHHHHHHHHHHHHHHhhC
Confidence            7766655433332222    34444555555544

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=88.81  E-value=2.2  Score=30.52  Aligned_cols=45  Identities=18%  Similarity=0.171  Sum_probs=22.7

Q ss_pred             HHHHHHHHHhhCCC-CChHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048269           92 LFWETLQEMGRRRL-VNDKTFKIALMTLAEVRELKKMVNFFHIMND  136 (465)
Q Consensus        92 ~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  136 (465)
                      +..+-++.+...+. |++.+..+.+++|.+.+++..|+++|+.++.
T Consensus        28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~   73 (108)
T PF02284_consen   28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD   73 (108)
T ss_dssp             HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            34444444444444 5555555555666555666666655555544

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=88.70  E-value=1.2  Score=25.68  Aligned_cols=28  Identities=11%  Similarity=0.145  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048269          373 NFDTIFVGGLVKAGKSLDAAKYVERVMN  400 (465)
Q Consensus       373 ~~~~~li~~~~~~g~~~~A~~~~~~m~~  400 (465)
                      .+++.|...|...|++++|..++++..+
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~   30 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALE   30 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence            4567777788888888888888887764

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=88.36  E-value=14  Score=30.93  Aligned_cols=178  Identities=14%  Similarity=-0.014  Sum_probs=96.6

Q ss_pred             CCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048269          157 KLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQ  236 (465)
Q Consensus       157 ~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~  236 (465)
                      |-+..|.-=|.+...-.|.-+.+||-|.-.+...|+++.|.+.|+...+....-+ .+...-.-++.--|++..|.+=|.
T Consensus        79 GL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~-Ya~lNRgi~~YY~gR~~LAq~d~~  157 (297)
T COG4785          79 GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN-YAHLNRGIALYYGGRYKLAQDDLL  157 (297)
T ss_pred             hHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch-HHHhccceeeeecCchHhhHHHHH
Confidence            4444444445544422244457788888888889999999999998887632212 222222222334588888887776


Q ss_pred             HHHHcCCCCCCcchHHHH-HHHHHhcCChHHHHHHH-HHHHHCCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHhcC--
Q 048269          237 MMRVKRMDDLGLSTYRIV-IDWMCKRGKISQAYTML-EEMFKRGIEADNLTLSSII-YGLLARGRLREAYKVVEEIEK--  311 (465)
Q Consensus       237 ~m~~~~~~~~~~~~~~~l-i~~~~~~~~~~~a~~~~-~~m~~~~~~~~~~~~~~li-~~~~~~~~~~~a~~~~~~~~~--  311 (465)
                      ..-+.  .|.|+  |.++ +-.-...-++.+|..-+ ++..+.    |..-|...| ..|...=..+.+.+-...-..  
T Consensus       158 ~fYQ~--D~~DP--fR~LWLYl~E~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n  229 (297)
T COG4785         158 AFYQD--DPNDP--FRSLWLYLNEQKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYLGKISEETLMERLKADATDN  229 (297)
T ss_pred             HHHhc--CCCCh--HHHHHHHHHHhhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHHhhccHHHHHHHHHhhccch
Confidence            66655  33122  2221 22222344566665443 333322    434443333 233222222222222221111  


Q ss_pred             -----CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048269          312 -----PDISLYHGLIKGLLRLRRAREATQVFREMIKR  343 (465)
Q Consensus       312 -----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  343 (465)
                           .=..+|-.+.+-+...|+.++|..+|+-.+..
T Consensus       230 ~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian  266 (297)
T COG4785         230 TSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN  266 (297)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence                 22456777888888999999999999988754

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=87.81  E-value=1.2  Score=24.32  Aligned_cols=27  Identities=0%  Similarity=0.112  Sum_probs=13.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048269          110 TFKIALMTLAEVRELKKMVNFFHIMND  136 (465)
Q Consensus       110 ~~~~l~~~~~~~~~~~~a~~~~~~~~~  136 (465)
                      +|..+..++...|++++|+..|++..+
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALE   29 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence            344445555555555555555555444

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=87.73  E-value=33  Score=34.57  Aligned_cols=354  Identities=11%  Similarity=0.031  Sum_probs=182.6

Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC----hHHHHHHHHHHH-hcCCHHHHHHHHHHhhhCCCCCCHH---
Q 048269           73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVN----DKTFKIALMTLA-EVRELKKMVNFFHIMNDCGCEYSLE---  144 (465)
Q Consensus        73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~---  144 (465)
                      +...|..||         ..|++.++.+.+...++    ..++-.+...+. ...+++.|+..+++....--.++..   
T Consensus        29 ~l~~Y~kLI---------~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k   99 (608)
T PF10345_consen   29 QLKQYYKLI---------ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLK   99 (608)
T ss_pred             hHHHHHHHH---------HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHH
Confidence            566677775         45677787777533332    235566666665 6788999999998775533223322   


Q ss_pred             --HHHHHHHHHHcCCCHHHHHHHHHHhh---cC--CCCCHHhHHHH-HHHHHhcCCHHHHHHHHHHHHHCC---CCCcHH
Q 048269          145 --MLNKVVKTLCQRKLVVEAKYLILKLS---EW--IKPNEIAYGWL-IKGYCDVGDLIEASKIWNLMTDEG---FEPSID  213 (465)
Q Consensus       145 --~~~~ll~~~~~~~~~~~a~~~~~~m~---~~--~~~~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~g---~~~~~~  213 (465)
                        ....++..+.+.+... |.+.+++..   .+  ..+-...|..+ +..+...+|...|.+.++.+...-   ..|-..
T Consensus       100 ~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~  178 (608)
T PF10345_consen  100 FRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVF  178 (608)
T ss_pred             HHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHH
Confidence              1234566777776666 888888865   22  22333444444 333434489999999998886632   244555


Q ss_pred             HHHHHHHHHH--hcCCHHHHHHHHHHHHHcCC--------CCCCcchHHHHHHHHH--hcCChHHHHHHHHHHHHC---C
Q 048269          214 VVDKMIETFF--KINKDDEAMKVFQMMRVKRM--------DDLGLSTYRIVIDWMC--KRGKISQAYTMLEEMFKR---G  278 (465)
Q Consensus       214 ~~~~li~~~~--~~g~~~~A~~~~~~m~~~~~--------~~~~~~~~~~li~~~~--~~~~~~~a~~~~~~m~~~---~  278 (465)
                      ++..++.+..  +.+..+++.+.++.+.....        .++...+|..+++.++  ..|+++.+...++++...   .
T Consensus       179 v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~  258 (608)
T PF10345_consen  179 VLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEI  258 (608)
T ss_pred             HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            5556665544  34556777777766633211        1224556777776654  567776777766665431   1


Q ss_pred             CCCC-HHHH--HHHHHHHHhcCCHH--HHHHHHHHhcCCCHhhHHHHHHH--HHhcCCHHHHHHHHHHHHHc--------
Q 048269          279 IEAD-NLTL--SSIIYGLLARGRLR--EAYKVVEEIEKPDISLYHGLIKG--LLRLRRAREATQVFREMIKR--------  343 (465)
Q Consensus       279 ~~~~-~~~~--~~li~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~~m~~~--------  343 (465)
                      .... ...+  ...+..-...+...  ...-+|.-+.+.+......++.+  ++..+..++|.+.+.+..+.        
T Consensus       259 ~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~  338 (608)
T PF10345_consen  259 KKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKS  338 (608)
T ss_pred             hcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccC
Confidence            1100 0000  00000000000000  00122222222333333333333  23334444554444443321        


Q ss_pred             CCCCC--------HHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC-----Hhh
Q 048269          344 GCEPT--------MHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGV-EVP-----RFD  409 (465)
Q Consensus       344 ~~~p~--------~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~-----~~~  409 (465)
                      ...+.        ...+...+..+              +.-..+...+-.+++..|...++.|.+..- .|+     ...
T Consensus       339 ~~~~~~sl~~~~~~~~~~~~l~~~--------------~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~  404 (608)
T PF10345_consen  339 PSAPSESLSEASERIQWLRYLQCY--------------LLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYP  404 (608)
T ss_pred             CCCCCcCHHHHHHhHHHHHHHHHH--------------HHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhH
Confidence            11111        11122222221              111223344567889999999999886311 121     224


Q ss_pred             HHHHHHHHh--hccchHHHHHHHH--------HHHHcCCCCchhHHHHHHH
Q 048269          410 YNKFLHYYS--NEEGVVMFEEVGK--------KLREVGLADLADIFQRYGK  450 (465)
Q Consensus       410 ~~~ll~~~~--~~g~~~~a~~~~~--------~~~~~g~~~~~~~~~~~~~  450 (465)
                      +..++.|..  ..|+.+.|+..|.        .....+....-.++..+..
T Consensus       405 ~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl  455 (608)
T PF10345_consen  405 LLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNL  455 (608)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHH
Confidence            444444443  3599999999997        5555566666666666654

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=87.04  E-value=36  Score=34.30  Aligned_cols=57  Identities=16%  Similarity=0.088  Sum_probs=33.2

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCC-CCC--CHhhHHHHHH-----HHhhccchHHHHHHHHHHHH
Q 048269          378 FVGGLVKAGKSLDAAKYVERVMNRG-VEV--PRFDYNKFLH-----YYSNEEGVVMFEEVGKKLRE  435 (465)
Q Consensus       378 li~~~~~~g~~~~A~~~~~~m~~~~-~~p--~~~~~~~ll~-----~~~~~g~~~~a~~~~~~~~~  435 (465)
                      |...+. .|+..+..+......... -.|  ....|..+..     .+...|+.++|....++...
T Consensus       541 m~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~  605 (608)
T PF10345_consen  541 MGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR  605 (608)
T ss_pred             HHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence            333344 788887766655543311 123  3346644443     35567999999988887654

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=86.97  E-value=28  Score=32.91  Aligned_cols=110  Identities=7%  Similarity=0.007  Sum_probs=74.8

Q ss_pred             HHhhhhhCCCCCCHHHHHHHHhcCCCChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCC
Q 048269           26 LHSSLSSCNFNLTHEFFLQICNNFPLSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRL  105 (465)
Q Consensus        26 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  105 (465)
                      +...|+.-+..|+.-.+..++...-.+++.+++....+ ...  +.....+...+++.....|++++|..+.+-|....+
T Consensus       312 ~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~-~~~--~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~ei  388 (831)
T PRK15180        312 LFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDV-EKI--IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEI  388 (831)
T ss_pred             HHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhch-hhh--hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhcccc
Confidence            56666666666666566666655555777777777665 333  234566677788888888888888888888877766


Q ss_pred             CChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 048269          106 VNDKTFKIALMTLAEVRELKKMVNFFHIMNDCG  138 (465)
Q Consensus       106 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  138 (465)
                      .++.+........-..|-++++.-.++++....
T Consensus       389 e~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~  421 (831)
T PRK15180        389 EDEEVLTVAAGSADALQLFDKSYHYWKRVLLLN  421 (831)
T ss_pred             CChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence            666666655555566677788888777776543

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.83  E-value=13  Score=36.04  Aligned_cols=74  Identities=12%  Similarity=0.096  Sum_probs=35.1

Q ss_pred             HcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 048269          154 CQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMK  233 (465)
Q Consensus       154 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~  233 (465)
                      .+.|+++.|.++..+..     +..-|..|.++....+++..|.+.|.....         |..|+-.+...|+-+....
T Consensus       648 l~lgrl~iA~~la~e~~-----s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~  713 (794)
T KOG0276|consen  648 LKLGRLDIAFDLAVEAN-----SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAV  713 (794)
T ss_pred             hhcCcHHHHHHHHHhhc-----chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHH
Confidence            34455555555544443     334455555555555555555555554432         2234444444444444434


Q ss_pred             HHHHHHHc
Q 048269          234 VFQMMRVK  241 (465)
Q Consensus       234 ~~~~m~~~  241 (465)
                      +-....+.
T Consensus       714 la~~~~~~  721 (794)
T KOG0276|consen  714 LASLAKKQ  721 (794)
T ss_pred             HHHHHHhh
Confidence            44444333

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=86.69  E-value=5.1  Score=33.36  Aligned_cols=50  Identities=4%  Similarity=-0.011  Sum_probs=20.3

Q ss_pred             HHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 048269           82 DIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFF  131 (465)
Q Consensus        82 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  131 (465)
                      ..+.+.++..+++...+.-.+..+.+...-..+++.++-.|++++|..-+
T Consensus         9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql   58 (273)
T COG4455           9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQL   58 (273)
T ss_pred             HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHH
Confidence            33334444444444444443333333333334444444444444443333

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=86.40  E-value=6.1  Score=32.93  Aligned_cols=79  Identities=14%  Similarity=0.032  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH---hhcCCCCCHHhHHHHHHH
Q 048269          110 TFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILK---LSEWIKPNEIAYGWLIKG  186 (465)
Q Consensus       110 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~---m~~~~~~~~~~~~~li~~  186 (465)
                      |.+..+..+.+.+.+.+++...++-.+.+ +.|...-..+++.++-.|++++|..-++-   |.....+-..+|..+|.+
T Consensus         3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~   81 (273)
T COG4455           3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC   81 (273)
T ss_pred             chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence            34556777888889999999888777764 56677778888999999999999765554   335566777888888886


Q ss_pred             HHh
Q 048269          187 YCD  189 (465)
Q Consensus       187 ~~~  189 (465)
                      -.-
T Consensus        82 ea~   84 (273)
T COG4455          82 EAA   84 (273)
T ss_pred             HHH
Confidence            553

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=86.34  E-value=1.8  Score=24.89  Aligned_cols=27  Identities=15%  Similarity=0.117  Sum_probs=14.7

Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHh
Q 048269           75 ITFNRMVDIIGKSRNIDLFWETLQEMG  101 (465)
Q Consensus        75 ~~~~~l~~~~~~~g~~~~a~~~~~~~~  101 (465)
                      .+++.+...|...|++++|..++++..
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al   29 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEAL   29 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence            345555556666666666665555543

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=86.14  E-value=14  Score=28.78  Aligned_cols=18  Identities=17%  Similarity=0.394  Sum_probs=8.6

Q ss_pred             HhcCCHHHHHHHHHHHHh
Q 048269          383 VKAGKSLDAAKYVERVMN  400 (465)
Q Consensus       383 ~~~g~~~~A~~~~~~m~~  400 (465)
                      ...|+|++|+++|++..+
T Consensus        55 i~rg~w~eA~rvlr~l~~   72 (153)
T TIGR02561        55 IARGNYDEAARILRELLS   72 (153)
T ss_pred             HHcCCHHHHHHHHHhhhc
Confidence            344445555555544443

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=86.11  E-value=32  Score=32.80  Aligned_cols=55  Identities=11%  Similarity=-0.006  Sum_probs=25.9

Q ss_pred             HHHHHHcCCCHHHHHHHHHHhhcCCCC--CHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 048269          149 VVKTLCQRKLVVEAKYLILKLSEWIKP--NEIAYGWLIKGYCDVGDLIEASKIWNLM  203 (465)
Q Consensus       149 ll~~~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m  203 (465)
                      +..++-+.|+.++|++.+.+|.+..+.  +......|+.++...+.+.++..++.+-
T Consensus       265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY  321 (539)
T PF04184_consen  265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY  321 (539)
T ss_pred             HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence            444444455555555555555421111  2234445555555555555555555554

The molecular function of this protein is uncertain.

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=85.98  E-value=5.4  Score=34.77  Aligned_cols=59  Identities=7%  Similarity=-0.058  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHh
Q 048269          110 TFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKL  169 (465)
Q Consensus       110 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m  169 (465)
                      +++...+.|..+|.+.+|.++.+...... +.+...+..++..+...|+--.+.+-++++
T Consensus       281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery  339 (361)
T COG3947         281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY  339 (361)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence            34445555666666666666666655544 445555555666666666655554444443

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.63  E-value=28  Score=33.96  Aligned_cols=132  Identities=13%  Similarity=0.038  Sum_probs=78.0

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhc
Q 048269          146 LNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKI  225 (465)
Q Consensus       146 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~  225 (465)
                      .+.+.+.+.+.|..++|+++        .+|....   .....+.|+++.|.++..+..      +..-|..|.++..+.
T Consensus       617 rt~va~Fle~~g~~e~AL~~--------s~D~d~r---Felal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~  679 (794)
T KOG0276|consen  617 RTKVAHFLESQGMKEQALEL--------STDPDQR---FELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSA  679 (794)
T ss_pred             hhhHHhHhhhccchHhhhhc--------CCChhhh---hhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhc
Confidence            44555556666666666553        2222211   123345677777776655542      456677777777777


Q ss_pred             CCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048269          226 NKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKV  305 (465)
Q Consensus       226 g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~  305 (465)
                      +++..|.+.|....          -|..|+-.+...|+.+....+-....+.|..      |....+|...|+++++.++
T Consensus       680 ~~l~lA~EC~~~a~----------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~------N~AF~~~~l~g~~~~C~~l  743 (794)
T KOG0276|consen  680 GELPLASECFLRAR----------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKN------NLAFLAYFLSGDYEECLEL  743 (794)
T ss_pred             ccchhHHHHHHhhc----------chhhhhhhhhhcCChhHHHHHHHHHHhhccc------chHHHHHHHcCCHHHHHHH
Confidence            88777777776432          3555666666777766666666665555532      2233456667777777777


Q ss_pred             HHHhc
Q 048269          306 VEEIE  310 (465)
Q Consensus       306 ~~~~~  310 (465)
                      +..-.
T Consensus       744 Li~t~  748 (794)
T KOG0276|consen  744 LISTQ  748 (794)
T ss_pred             HHhcC
Confidence            65543

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=85.37  E-value=24  Score=30.91  Aligned_cols=22  Identities=27%  Similarity=0.267  Sum_probs=15.8

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHH
Q 048269          377 IFVGGLVKAGKSLDAAKYVERV  398 (465)
Q Consensus       377 ~li~~~~~~g~~~~A~~~~~~m  398 (465)
                      .+|..+.+.|.+.+|+.+...+
T Consensus       130 Kli~l~y~~~~YsdalalIn~l  151 (421)
T COG5159         130 KLIYLLYKTGKYSDALALINPL  151 (421)
T ss_pred             HHHHHHHhcccHHHHHHHHHHH
Confidence            3677778888888888765443

>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]

Probab=85.32  E-value=26  Score=31.00  Aligned_cols=16  Identities=19%  Similarity=0.553  Sum_probs=8.1

Q ss_pred             hHHHHHHHHHhcCChH
Q 048269          250 TYRIVIDWMCKRGKIS  265 (465)
Q Consensus       250 ~~~~li~~~~~~~~~~  265 (465)
                      +|..|+.+++..|+.+
T Consensus       323 ~yaPLL~af~s~g~sE  338 (412)
T KOG2297|consen  323 QYAPLLAAFCSQGQSE  338 (412)
T ss_pred             hhhHHHHHHhcCChHH
Confidence            3444555555555544

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=85.27  E-value=39  Score=32.96  Aligned_cols=133  Identities=8%  Similarity=-0.037  Sum_probs=84.0

Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 048269           73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKT  152 (465)
Q Consensus        73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~  152 (465)
                      +-..|+.+|.--......+.+..++..+...-+.--.-|......=.+.|..+.+.++|++-.. |++.+...|...+..
T Consensus        44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f  122 (577)
T KOG1258|consen   44 DFDAWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAF  122 (577)
T ss_pred             cccchHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHH
Confidence            3444555555444444556666666666655444344556666666777888888888887775 456666666665544


Q ss_pred             HH-cCCCHHHHHHHHHHhh--cC-CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048269          153 LC-QRKLVVEAKYLILKLS--EW-IKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDE  206 (465)
Q Consensus       153 ~~-~~~~~~~a~~~~~~m~--~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  206 (465)
                      +. ..|+.+.....|+...  -| .--....|...|.--...+++.....++++..+.
T Consensus       123 ~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei  180 (577)
T KOG1258|consen  123 LKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI  180 (577)
T ss_pred             HhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence            43 4567777777777766  22 1223455667777667777788888888887764

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=85.05  E-value=2.4  Score=23.02  Aligned_cols=26  Identities=4%  Similarity=0.144  Sum_probs=12.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048269          111 FKIALMTLAEVRELKKMVNFFHIMND  136 (465)
Q Consensus       111 ~~~l~~~~~~~~~~~~a~~~~~~~~~  136 (465)
                      +..+...+...|++++|++.|++..+
T Consensus         4 ~~~lg~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF07719_consen    4 WYYLGQAYYQLGNYEEAIEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            44444455555555555555554443

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=84.92  E-value=32  Score=31.65  Aligned_cols=31  Identities=10%  Similarity=0.195  Sum_probs=19.7

Q ss_pred             CCHHHHHHHHHHHHhCCCCCCH-hhHHHHHHHHh
Q 048269          386 GKSLDAAKYVERVMNRGVEVPR-FDYNKFLHYYS  418 (465)
Q Consensus       386 g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~  418 (465)
                      +..+++...|++..+  +.|+. ..|..+...+.
T Consensus       272 ~~~~~~~~~~~~a~~--~~~~~~k~~~~~a~~~~  303 (352)
T PF02259_consen  272 ESSDEILKYYKEATK--LDPSWEKAWHSWALFND  303 (352)
T ss_pred             ccHHHHHHHHHHHHH--hChhHHHHHHHHHHHHH
Confidence            778888888888876  44533 35555544443

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=84.60  E-value=0.49  Score=37.04  Aligned_cols=53  Identities=11%  Similarity=0.231  Sum_probs=24.5

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 048269          219 IETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLE  272 (465)
Q Consensus       219 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~  272 (465)
                      +..+.+.+.++....+++.+...+... +....+.++..|++.++.++..++++
T Consensus        14 i~~~~~~~~~~~l~~yLe~~~~~~~~~-~~~~~~~L~~ly~~~~~~~~l~~~L~   66 (143)
T PF00637_consen   14 ISAFEERNQPEELIEYLEALVKENKEN-NPDLHTLLLELYIKYDPYEKLLEFLK   66 (143)
T ss_dssp             HHHCTTTT-GGGCTCCHHHHHHTSTC--SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred             HHHHHhCCCHHHHHHHHHHHHhccccc-CHHHHHHHHHHHHhcCCchHHHHHcc
Confidence            344444445555555555555433222 44455555555555544444444444

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=84.10  E-value=3.4  Score=22.41  Aligned_cols=27  Identities=15%  Similarity=0.091  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048269          374 FDTIFVGGLVKAGKSLDAAKYVERVMN  400 (465)
Q Consensus       374 ~~~~li~~~~~~g~~~~A~~~~~~m~~  400 (465)
                      +|..+...|...|++++|.+.|++..+
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~   29 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            466677778888888888888888775

...

>PF13762 MNE1: Mitochondrial splicing apparatus component

Probab=83.28  E-value=20  Score=27.99  Aligned_cols=80  Identities=9%  Similarity=0.128  Sum_probs=43.9

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHhh--cC----CCCCHHhHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCcHHHHHHH
Q 048269          146 LNKVVKTLCQRKLVVEAKYLILKLS--EW----IKPNEIAYGWLIKGYCDVGD-LIEASKIWNLMTDEGFEPSIDVVDKM  218 (465)
Q Consensus       146 ~~~ll~~~~~~~~~~~a~~~~~~m~--~~----~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~~~~~~~~~l  218 (465)
                      .|.++.-....+++....++++.+.  ..    -..+...|..++++..+..- --.+..+|..|++.+.+++..-|..+
T Consensus        42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l  121 (145)
T PF13762_consen   42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL  121 (145)
T ss_pred             HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence            3444444444455555555554443  00    12344556666666655544 34456666777666666677777777


Q ss_pred             HHHHHhc
Q 048269          219 IETFFKI  225 (465)
Q Consensus       219 i~~~~~~  225 (465)
                      +.++.+-
T Consensus       122 i~~~l~g  128 (145)
T PF13762_consen  122 IKAALRG  128 (145)
T ss_pred             HHHHHcC
Confidence            7665544

>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]

Probab=83.00  E-value=28  Score=29.59  Aligned_cols=91  Identities=22%  Similarity=0.311  Sum_probs=55.6

Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH----------------hcCCCHhhHHHHH
Q 048269          258 MCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEE----------------IEKPDISLYHGLI  321 (465)
Q Consensus       258 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~----------------~~~~~~~~~~~li  321 (465)
                      |.+..+.+-..++.+-....++..+..-...++  +...|+..+|...++.                .-.|.+.....++
T Consensus       169 ysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml  246 (333)
T KOG0991|consen  169 YSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKML  246 (333)
T ss_pred             hcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHH
Confidence            334444443444444444444444444444433  3445555555554443                3337888788888


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 048269          322 KGLLRLRRAREATQVFREMIKRGCEPTMHT  351 (465)
Q Consensus       322 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~  351 (465)
                      ..|.+ +++++|.+++.++-+.|+.|....
T Consensus       247 ~~~~~-~~~~~A~~il~~lw~lgysp~Dii  275 (333)
T KOG0991|consen  247 QACLK-RNIDEALKILAELWKLGYSPEDII  275 (333)
T ss_pred             HHHHh-ccHHHHHHHHHHHHHcCCCHHHHH
Confidence            77654 689999999999999999887544

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=82.89  E-value=3.2  Score=24.65  Aligned_cols=25  Identities=20%  Similarity=0.403  Sum_probs=18.8

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCC
Q 048269          378 FVGGLVKAGKSLDAAKYVERVMNRG  402 (465)
Q Consensus       378 li~~~~~~g~~~~A~~~~~~m~~~~  402 (465)
                      |..+|...|+.+.|.+++++....|
T Consensus         5 LA~ayie~Gd~e~Ar~lL~evl~~~   29 (44)
T TIGR03504         5 LARAYIEMGDLEGARELLEEVIEEG   29 (44)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHcC
Confidence            4567788888888888888887643

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=82.65  E-value=62  Score=33.32  Aligned_cols=221  Identities=14%  Similarity=0.071  Sum_probs=109.3

Q ss_pred             hcCCHHHHHHHHHHHHHCCCCC----cH---HHHHHHHH-HHHhcCCHHHHHHHHHHHHHc----CCCCCCcchHHHHHH
Q 048269          189 DVGDLIEASKIWNLMTDEGFEP----SI---DVVDKMIE-TFFKINKDDEAMKVFQMMRVK----RMDDLGLSTYRIVID  256 (465)
Q Consensus       189 ~~g~~~~a~~~~~~m~~~g~~~----~~---~~~~~li~-~~~~~g~~~~A~~~~~~m~~~----~~~~~~~~~~~~li~  256 (465)
                      ...++.+|..+..++...--.|    ..   ..++.+-. .....|+++.|.++.+.....    ...+ ....+..+..
T Consensus       427 s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~-r~~~~sv~~~  505 (894)
T COG2909         427 SQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRS-RIVALSVLGE  505 (894)
T ss_pred             HccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchh-hhhhhhhhhH
Confidence            3456666666666654421111    11   12222221 223457778887777766543    1112 3445666677


Q ss_pred             HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH-----HHHHhcCCH--HHHHHHHHHhcC----------CCHhhHHH
Q 048269          257 WMCKRGKISQAYTMLEEMFKRGIEADNLTLSSII-----YGLLARGRL--REAYKVVEEIEK----------PDISLYHG  319 (465)
Q Consensus       257 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li-----~~~~~~~~~--~~a~~~~~~~~~----------~~~~~~~~  319 (465)
                      +..-.|++++|..+..+..+..-..+...+....     ..+...|+.  .+....|.....          +-..++..
T Consensus       506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~  585 (894)
T COG2909         506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ  585 (894)
T ss_pred             HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence            7777888888888877665542233333332222     224455532  222233332222          12233444


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048269          320 LIKGLLRLRRAREATQVFREMIKRG--CEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVER  397 (465)
Q Consensus       320 li~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  397 (465)
                      +..++.+   .+.+..-...-.+-|  ..|........+                   ..|...+...|+.++|...+.+
T Consensus       586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~-------------------~~LA~l~~~~Gdl~~A~~~l~~  643 (894)
T COG2909         586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLAL-------------------SMLAELEFLRGDLDKALAQLDE  643 (894)
T ss_pred             HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHH-------------------HHHHHHHHhcCCHHHHHHHHHH
Confidence            4444444   333332222222211  123322222221                   1467778999999999999999


Q ss_pred             HHhCCCCC----CHhhHHHHHHHH--hhccchHHHHHHHHH
Q 048269          398 VMNRGVEV----PRFDYNKFLHYY--SNEEGVVMFEEVGKK  432 (465)
Q Consensus       398 m~~~~~~p----~~~~~~~ll~~~--~~~g~~~~a~~~~~~  432 (465)
                      +......+    +...-...+...  ...|+.+.+.....+
T Consensus       644 ~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~  684 (894)
T COG2909         644 LERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK  684 (894)
T ss_pred             HHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence            88743333    222222222222  235888877777666

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=81.97  E-value=16  Score=26.04  Aligned_cols=62  Identities=5%  Similarity=0.048  Sum_probs=48.1

Q ss_pred             CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhccchHHHHHHHHHHHHc-CCCCchhHHHHHHH
Q 048269          387 KSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNEEGVVMFEEVGKKLREV-GLADLADIFQRYGK  450 (465)
Q Consensus       387 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-g~~~~~~~~~~~~~  450 (465)
                      |.-++.+-++.+....+.|++.+..+.+++|.+.+++..|..+++.++.+ |-  ...+|..+.+
T Consensus        22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq   84 (103)
T cd00923          22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ   84 (103)
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence            44566777777777788899999999999999999999999999988844 32  3446666654

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=81.38  E-value=37  Score=29.90  Aligned_cols=67  Identities=16%  Similarity=0.169  Sum_probs=50.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHhcC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHH
Q 048269          286 LSSIIYGLLARGRLREAYKVVEEIEK---PDISLYHGLIKGLLRLRRAREATQVFREMIK-----RGCEPTMHTY  352 (465)
Q Consensus       286 ~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~~  352 (465)
                      ++.....|..+|.+.+|.++.+....   .+...+-.++..++..|+--.|.+-++++.+     .|+..+...+
T Consensus       282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie  356 (361)
T COG3947         282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE  356 (361)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence            45566788899999999999988887   5667788888899999987777777766642     2666655443

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=80.85  E-value=3.1  Score=21.19  Aligned_cols=21  Identities=14%  Similarity=0.290  Sum_probs=14.2

Q ss_pred             HHHHHHHHhcCCHHHHHHHHH
Q 048269          376 TIFVGGLVKAGKSLDAAKYVE  396 (465)
Q Consensus       376 ~~li~~~~~~g~~~~A~~~~~  396 (465)
                      ..+...+...|++++|..+++
T Consensus         5 ~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    5 LALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHcCCHHHHHHHHh
Confidence            345566677777777777665

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF13762 MNE1: Mitochondrial splicing apparatus component

Probab=80.77  E-value=25  Score=27.45  Aligned_cols=73  Identities=19%  Similarity=0.216  Sum_probs=50.7

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHhcC---------CCHhhHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 048269          287 SSIIYGLLARGRLREAYKVVEEIEK---------PDISLYHGLIKGLLRLRR-AREATQVFREMIKRGCEPTMHTYIMLL  356 (465)
Q Consensus       287 ~~li~~~~~~~~~~~a~~~~~~~~~---------~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~ll  356 (465)
                      +.++.-....++......+++.+..         .+...|++++.+..+..- ---+..+|.-|.+.+.+++...|..++
T Consensus        43 N~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li  122 (145)
T PF13762_consen   43 NCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLI  122 (145)
T ss_pred             HHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            4555555555555555555555433         456678888888866555 445677888888878889999999888


Q ss_pred             HHh
Q 048269          357 QGH  359 (465)
Q Consensus       357 ~~~  359 (465)
                      .++
T Consensus       123 ~~~  125 (145)
T PF13762_consen  123 KAA  125 (145)
T ss_pred             HHH
Confidence            887

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=80.49  E-value=46  Score=30.33  Aligned_cols=77  Identities=10%  Similarity=-0.029  Sum_probs=46.5

Q ss_pred             hHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHc---CCCHHHHHHHHH
Q 048269           91 DLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQ---RKLVVEAKYLIL  167 (465)
Q Consensus        91 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~---~~~~~~a~~~~~  167 (465)
                      +.-+.+++++.+.++.+.......+..+.+..+.++..+-++.+.... +-+...|...+.....   .-.++....+|.
T Consensus        48 E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~  126 (321)
T PF08424_consen   48 ERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVYE  126 (321)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence            445667777766666666667777777777777777777777777653 3355566655554433   123444444444


Q ss_pred             H
Q 048269          168 K  168 (465)
Q Consensus       168 ~  168 (465)
                      +
T Consensus       127 ~  127 (321)
T PF08424_consen  127 K  127 (321)
T ss_pred             H
Confidence            4

>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins

Probab=80.48  E-value=22  Score=31.05  Aligned_cols=56  Identities=7%  Similarity=0.102  Sum_probs=24.2

Q ss_pred             HHHHHhcCChhHHHHHHHHHhh-CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048269           81 VDIIGKSRNIDLFWETLQEMGR-RRLVNDKTFKIALMTLAEVRELKKMVNFFHIMND  136 (465)
Q Consensus        81 ~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  136 (465)
                      |.++++.++|.+++...-+--+ ....++.+...-|-.|.+.+.+..+.++-.....
T Consensus        90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~  146 (309)
T PF07163_consen   90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQ  146 (309)
T ss_pred             HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence            4455555555544433222111 1112344444445555555555555555444443

Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	465
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	2e-10
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	5e-05
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	4e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 75.3 bits (184), Expect = 2e-14
 Identities = 56/410 (13%), Positives = 119/410 (29%), Gaps = 109/410 (26%)

Query: 2   PVDPGHLVRVCTI------LYQQQYSPESRLH-------SSL--SSCNFNLTHEFFLQIC 46
                ++ R+         L + + +    +        + +    C       + +Q  
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL-----SYKVQCK 179

Query: 47  NNFPLSW-------RPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQE 99
            +F + W        P  +     +  Q         +    D    S NI L   ++Q 
Sbjct: 180 MDFKIFWLNLKNCNSPETVL----EMLQKLLYQIDPNWTSRSDH---SSNIKLRIHSIQA 232

Query: 100 MGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGC------------------EY 141
              RRL+  K ++  L+ L  V+   K  N F    +  C                    
Sbjct: 233 -ELRRLLKSKPYENCLLVLLNVQN-AKAWNAF----NLSCKILLTTRFKQVTDFLSAATT 286

Query: 142 SLEMLNKVVKTLCQRK-LVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVG----DLIEA 196
           +   L+    TL   +   +  KYL  +  +   P E+                  +I  
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDL--PREV---------LTTNPRRLSIIAE 335

Query: 197 SKIWNLMTDEGFE-PSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVI 255
           S    L T + ++  + D +  +IE+   + +  E  K+F  + V       + T  + +
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP-PSAHIPTILLSL 394

Query: 256 DWMCKRGKISQAYTMLEEMFKRG-IEADNLTLSSIIYGLLAR------------GRLREA 302
            W            ++ ++ K   +E      +  I  +                 + + 
Sbjct: 395 IWFDVIKSDVM--VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH 452

Query: 303 YKVVEEIEKPDISL------------YHGLIKGLLRLRRAREATQVFREM 340
           Y + +  +  D+              +H     L  +    E   +FR +
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYFYSHIGHH-----LKNIEHP-ERMTLFRMV 496

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 3e-04
 Identities = 26/158 (16%), Positives = 59/158 (37%), Gaps = 32/158 (20%)

Query: 125 KKMVNFFH--IMNDCGCEYSLEML-----NKVVKTLCQRKLVVEAKYLILKLSEWI---K 174
           K +++ F    +++  C+   +M       + +  +   K  V     +     W    K
Sbjct: 19  KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF----WTLLSK 74

Query: 175 PNEIAYGWLIKGYCDVGDLIEASKIWNLMT---DEGFEPSIDVVDKMIETFFKINKDDEA 231
             E+   +       V +++  +  + LM+    E  +PS+      IE   ++  D++ 
Sbjct: 75  QEEMVQKF-------VEEVLRINYKF-LMSPIKTEQRQPSMM-TRMYIEQRDRLYNDNQV 125

Query: 232 MKVFQMMRVKRMDDL--GLSTYR----IVIDWMCKRGK 263
              + + R++    L   L   R    ++ID +   GK
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK 163

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 62.1 bits (149), Expect = 2e-10
 Identities = 15/114 (13%), Positives = 38/114 (33%), Gaps = 8/114 (7%)

Query: 260 KRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK-------P 312
            +  +        +  +  +      L +     L   +L  A+ ++             
Sbjct: 104 GKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL 163

Query: 313 DISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRK 366
            + +Y+ ++ G  R    +E   V   +   G  P + +Y   LQ  +G++ + 
Sbjct: 164 TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQC-MGRQDQD 216

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 44.8 bits (104), Expect = 5e-05
 Identities = 22/193 (11%), Positives = 61/193 (31%), Gaps = 8/193 (4%)

Query: 134 MNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIK----PNEIAYGWLIKGYCD 189
            +        + L    K       +  A +L++      +         Y  ++ G+  
Sbjct: 118 HSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWAR 177

Query: 190 VGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAM-KVFQMMRVKRMDDLGL 248
            G   E   +  ++ D G  P +      ++   + ++D   + +  + M  + +    L
Sbjct: 178 QGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQAL 237

Query: 249 STYRIVIDWMCKRGKISQAYTMLEEMFK-RGIEADNLTLSSIIYGLLARGRLREAYKVVE 307
            T  ++ +    R  + +A   ++  F         +  S ++  + A+       K+  
Sbjct: 238 FTAVLLSEED--RATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHL 295

Query: 308 EIEKPDISLYHGL 320
            ++         L
Sbjct: 296 PLKTLQCLFEKQL 308

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 47.4 bits (112), Expect = 4e-06
 Identities = 29/195 (14%), Positives = 60/195 (30%), Gaps = 12/195 (6%)

Query: 153 LCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKG--YCDVGDLIEASKIWNLMTDEGFEP 210
           L            + +              L+    Y    +   A +  +         
Sbjct: 75  LASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDS----- 129

Query: 211 SIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTM 270
            ++ +   ++   K+++ D A K  + M+ +  D          +       K+  AY +
Sbjct: 130 -LECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYI 188

Query: 271 LEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEKPDIS---LYHGLIKGLLRL 327
            +EM  +      L L+      +A+GR   A  V++E    D         L+     L
Sbjct: 189 FQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHL 247

Query: 328 RRAREATQVFREMIK 342
            +  E T  +   +K
Sbjct: 248 GKPPEVTNRYLSQLK 262

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	465
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	100.0
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	99.98
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.97
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.96
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.93
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.92
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.92
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.9
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.9
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.89
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.89
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.87
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.86
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.85
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.84
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.82
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.82
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.81
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.81
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.79
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.78
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.78
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.77
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.77
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.77
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.76
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.75
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.75
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.75
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.74
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.74
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.72
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.72
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.71
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.68
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.67
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.67
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.67
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.66
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.66
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.65
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.65
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.65
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.63
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.63
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.63
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.61
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.6
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.6
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.6
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.59
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.59
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.58
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.58
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.57
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.54
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.54
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.54
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.53
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.51
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.51
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.51
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.5
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.49
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.48
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.45
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.45
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.45
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.43
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.42
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.41
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.41
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.39
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.37
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.35
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.34
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.33
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.33
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.32
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.28
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.27
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.25
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.23
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.21
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.18
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.18
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.17
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.16
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.11
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.1
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.1
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.09
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.04
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.04
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.02
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.0
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.0
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.0
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.0
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.99
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.98
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.97
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.95
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.95
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.94
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.93
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.93
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.92
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.89
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.88
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.88
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.85
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.84
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.79
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.78
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.76
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.75
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.75
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.75
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.75
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.74
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.74
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.74
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.74
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.73
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.71
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.7
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.69
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.69
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.67
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.66
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.65
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.64
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.64
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.64
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.63
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.62
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.61
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.61
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.61
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.6
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.6
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.58
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.56
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.56
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.56
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.55
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.54
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.54
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.49
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.46
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.45
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.45
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.44
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.44
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.44
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.4
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.39
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.37
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.37
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.37
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.33
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.33
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.32
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.32
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.32
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.31
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.31
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.3
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.29
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.26
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.23
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.16
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.15
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.14
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.13
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.13
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.13
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.12
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.07
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.06
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	97.98
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.98
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.97
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	97.97
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.96
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.94
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.93
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.92
3k9i_A	117	BH0479 protein; putative protein binding protein,	97.9
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.85
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.83
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.77
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.76
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.75
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.74
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.71
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.7
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.65
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.59
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.57
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.51
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.5
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.48
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.42
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.28
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.08
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.02
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	96.95
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.81
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.81
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	96.64
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.56
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.51
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	96.49
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	96.47
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	96.41
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	96.37
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	96.17
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	96.15
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	95.95
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	95.83
1pc2_A	152	Mitochondria fission protein; unknown function; NM	95.82
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	95.79
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	95.68
1pc2_A	152	Mitochondria fission protein; unknown function; NM	95.52
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	95.48
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	94.88
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	94.7
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	94.43
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	94.14
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	94.13
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	93.73
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	93.65
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	93.54
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	93.43
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	93.08
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	91.34
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	91.24
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	90.46
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	90.31
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	90.3
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	88.91
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	87.67
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	87.64
3esl_A	202	Checkpoint serine/threonine-protein kinase BUB1; m	86.66
4a1g_A	152	Mitotic checkpoint serine/threonine-protein kinas;	86.18
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	85.93
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	85.62
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	85.59
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	85.51
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	85.41
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	85.26
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	84.92
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	84.9
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	84.36
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	83.8
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	83.7
2nsz_A	129	Programmed cell death protein 4; PDCD4, tumor supp	83.12
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	83.1
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	82.91
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	82.79
2wvi_A	164	Mitotic checkpoint serine/threonine-protein kinase	81.67
2uwj_G	115	Type III export protein PSCG; virulence, chaperone	81.46
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	81.24
2p58_C	116	Putative type III secretion protein YSCG; type III	80.97
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	80.64

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.6e-33  Score=277.27  Aligned_cols=405  Identities=9%  Similarity=0.002  Sum_probs=311.8

Q ss_pred             HHHHHHHhcCC--CChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHH
Q 048269           40 EFFLQICNNFP--LSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMT  117 (465)
Q Consensus        40 ~~~~~~l~~~~--~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~  117 (465)
                      ..+..++..+.  ++++.|+.+|+.++.    ..|+..++..++.+|.+.|++++|..+|+.+... ..+..+++.++.+
T Consensus        85 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~  159 (597)
T 2xpi_A           85 DYLRLWRHDALMQQQYKCAAFVGEKVLD----ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRYLAAFC  159 (597)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH----HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCchHHHHHHHHHHh----hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccchhHHHHHHHH
Confidence            33444444333  378889999988732    3457788888999999999999999999887543 3567788999999


Q ss_pred             HHhcCCHHHHHHHHHHhhh-C--------------CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHH
Q 048269          118 LAEVRELKKMVNFFHIMND-C--------------GCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGW  182 (465)
Q Consensus       118 ~~~~~~~~~a~~~~~~~~~-~--------------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~  182 (465)
                      |.+.|++++|+++|+++.. .              +.+.+..+|+.++.+|.+.|++++|+++|++|....+.+...+..
T Consensus       160 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~  239 (597)
T 2xpi_A          160 LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQ  239 (597)
T ss_dssp             HHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHH
Confidence            9999999999999985332 1              234467889999999999999999999999987322333333333


Q ss_pred             H--------------------------------------HHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHh
Q 048269          183 L--------------------------------------IKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFK  224 (465)
Q Consensus       183 l--------------------------------------i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~  224 (465)
                      +                                      +..|.+.|++++|.++|+++.+.  +++..+|+.++.+|.+
T Consensus       240 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~  317 (597)
T 2xpi_A          240 LVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFV  317 (597)
T ss_dssp             HHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHH
T ss_pred             HHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHH
Confidence            2                                      45566778888888888888765  5788899999999999


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048269          225 INKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYK  304 (465)
Q Consensus       225 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~  304 (465)
                      .|++++|.++|+++.+.+  |.+..++..++.+|.+.|++++|..+++++.+.. +.+..++..++..|.+.|++++|.+
T Consensus       318 ~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~  394 (597)
T 2xpi_A          318 RSRFIDVLAITTKILEID--PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARR  394 (597)
T ss_dssp             TTCHHHHHHHHHHHHHHC--TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHH
Confidence            999999999999988763  4477888999999999999999999999888653 4467888888899999999999999


Q ss_pred             HHHHhcC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccC-----------CCCCCC
Q 048269          305 VVEEIEK---PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRG-----------RKGPDP  370 (465)
Q Consensus       305 ~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-----------~~~~~~  370 (465)
                      +|+++.+   .+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..+...+...+.           ....+.
T Consensus       395 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  473 (597)
T 2xpi_A          395 YFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY  473 (597)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            9988865   557788899999999999999999999888653 3467778888777766555           122344


Q ss_pred             chHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC--HhhHHHHHHHHhhccchHHHHHHHHHHHHcCCCCchhH
Q 048269          371 LVNFDTIFVGGLVKAGKSLDAAKYVERVMNR----GVEVP--RFDYNKFLHYYSNEEGVVMFEEVGKKLREVGLADLADI  444 (465)
Q Consensus       371 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~  444 (465)
                      ++.+|+.++..|.+.|++++|.++|+++.+.    +..|+  ..+|..+..+|.+.|++++|.++++++.+.+ .....+
T Consensus       474 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~  552 (597)
T 2xpi_A          474 DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANV  552 (597)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHH
T ss_pred             ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHH
Confidence            6788889999999999999999999988775    66777  5688899999999999999999999988876 234566


Q ss_pred             HHHHHHHHhHHh
Q 048269          445 FQRYGKKMATRE  456 (465)
Q Consensus       445 ~~~~~~~~~~~~  456 (465)
                      |..++......+
T Consensus       553 ~~~l~~~~~~~g  564 (597)
T 2xpi_A          553 HTAIALVYLHKK  564 (597)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhC
Confidence            666665544443

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.7e-32  Score=270.04  Aligned_cols=387  Identities=7%  Similarity=-0.073  Sum_probs=318.6

Q ss_pred             CChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCC----------------CCChHHHHHH
Q 048269           51 LSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRR----------------LVNDKTFKIA  114 (465)
Q Consensus        51 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----------------~~~~~~~~~l  114 (465)
                      ++++.|..+|+.+ ..   ..++..+++.++.+|.+.|++++|.++|+++....                ..+..+|+.+
T Consensus       131 g~~~~A~~~~~~~-~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  206 (597)
T 2xpi_A          131 GDYARAKCLLTKE-DL---YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLR  206 (597)
T ss_dssp             TCHHHHHHHHHHT-CG---GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHH
T ss_pred             CcHHHHHHHHHHH-hc---cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHH
Confidence            3788999999986 22   25689999999999999999999999999643332                1246789999


Q ss_pred             HHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHH--------------------------------------HHHHHHcC
Q 048269          115 LMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNK--------------------------------------VVKTLCQR  156 (465)
Q Consensus       115 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--------------------------------------ll~~~~~~  156 (465)
                      +.+|.+.|++++|+++|+++.+.+ +.+...+..                                      ++..|.+.
T Consensus       207 ~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (597)
T 2xpi_A          207 GQVYTNLSNFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHE  285 (597)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCc
Confidence            999999999999999999998865 223333332                                      35566788


Q ss_pred             CCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048269          157 KLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQ  236 (465)
Q Consensus       157 ~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~  236 (465)
                      |++++|.++|+++... +++..+++.++.+|.+.|++++|.++|+++.+.+ +.+..+++.++.++.+.|++++|.++++
T Consensus       286 g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~  363 (597)
T 2xpi_A          286 DELRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISN  363 (597)
T ss_dssp             HHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             chHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            9999999999998732 6889999999999999999999999999998765 3367788999999999999999999999


Q ss_pred             HHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC---CC
Q 048269          237 MMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK---PD  313 (465)
Q Consensus       237 ~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~  313 (465)
                      .+...  .|.+..+++.++..|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+   .+
T Consensus       364 ~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  440 (597)
T 2xpi_A          364 DLVDR--HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGT  440 (597)
T ss_dssp             HHHHH--CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTC
T ss_pred             HHHhh--CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence            99865  45478889999999999999999999999988753 23677899999999999999999999998876   57


Q ss_pred             HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccC----------------CCCCCCc--hHHH
Q 048269          314 ISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRG----------------RKGPDPL--VNFD  375 (465)
Q Consensus       314 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~----------------~~~~~~~--~~~~  375 (465)
                      ..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|..+...+...+.                ..+..|+  ..+|
T Consensus       441 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~  519 (597)
T 2xpi_A          441 HLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATW  519 (597)
T ss_dssp             SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHH
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHH
Confidence            7889999999999999999999999998753 3467888888888876666                2256777  7899


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhccchHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 048269          376 TIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNEEGVVMFEEVGKKLREVGLADLADIFQRYGK  450 (465)
Q Consensus       376 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~~~~  450 (465)
                      ..++.+|.+.|++++|.++++++.+.+ ..+..+|..+..+|.+.|++++|.+.++++.+..-. ....+..++.
T Consensus       520 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~  592 (597)
T 2xpi_A          520 ANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN-EIMASDLLKR  592 (597)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-ChHHHHHHHH
Confidence            999999999999999999999999854 336789999999999999999999999999997532 3444444443

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=100.00  E-value=2.9e-32  Score=259.51  Aligned_cols=204  Identities=11%  Similarity=0.071  Sum_probs=174.3

Q ss_pred             HHHHHHHHHhhCCC-CC-hHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCC---------HH
Q 048269           92 LFWETLQEMGRRRL-VN-DKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKL---------VV  160 (465)
Q Consensus        92 ~a~~~~~~~~~~~~-~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---------~~  160 (465)
                      .+..+.+.+.+.+. .+ ...++.+|.+|++.|++++|+++|++|.+.|+.||..+||+||.+|++.+.         ++
T Consensus         8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~   87 (501)
T 4g26_A            8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS   87 (501)
T ss_dssp             ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred             hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence            44555666766666 33 346888999999999999999999999999999999999999999987654         68


Q ss_pred             HHHHHHHHhh-cCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048269          161 EAKYLILKLS-EWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMR  239 (465)
Q Consensus       161 ~a~~~~~~m~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  239 (465)
                      .|.++|++|. .|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.
T Consensus        88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~  167 (501)
T 4g26_A           88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV  167 (501)
T ss_dssp             HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence            8999999999 899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048269          240 VKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLAR  296 (465)
Q Consensus       240 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~  296 (465)
                      +.|+.| |..||++||.+|++.|+.++|.+++++|.+.|..|+..||+.++..|+..
T Consensus       168 ~~G~~P-d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~  223 (501)
T 4g26_A          168 ESEVVP-EEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE  223 (501)
T ss_dssp             HTTCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred             hcCCCC-CHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence            999999 99999999999999999999999999999999999999999999988753

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=99.98  E-value=3.4e-31  Score=252.12  Aligned_cols=202  Identities=13%  Similarity=0.155  Sum_probs=174.7

Q ss_pred             HHHHHHHHHhhhCCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHhh-cCCCCCHHhHHHHHHHHHhcCC---------H
Q 048269          125 KKMVNFFHIMNDCGCEYSL-EMLNKVVKTLCQRKLVVEAKYLILKLS-EWIKPNEIAYGWLIKGYCDVGD---------L  193 (465)
Q Consensus       125 ~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~-~~~~~~~~~~~~li~~~~~~g~---------~  193 (465)
                      ..+..+.+.+.+.+..+.+ ..++.+|++|++.|++++|.++|++|. .|+.||..||++||.+|++.+.         +
T Consensus         7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l   86 (501)
T 4g26_A            7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL   86 (501)
T ss_dssp             -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred             chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence            3455666777777766554 458889999999999999999999999 9999999999999999987654         6


Q ss_pred             HHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 048269          194 IEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEE  273 (465)
Q Consensus       194 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~  273 (465)
                      +.|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.| |..+|+++|.+|++.|++++|.++|++
T Consensus        87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~  165 (501)
T 4g26_A           87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQP-RLRSYGPALFGFCRKGDADKAYEVDAH  165 (501)
T ss_dssp             HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ccceehHHHHHHHHCCCHHHHHHHHHH
Confidence            8899999999999999999999999999999999999999999999999999 999999999999999999999999999


Q ss_pred             HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC----CCHhhHHHHHHHHHhc
Q 048269          274 MFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK----PDISLYHGLIKGLLRL  327 (465)
Q Consensus       274 m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~  327 (465)
                      |.+.|+.||..||+.||.+|++.|+.++|.++|++|.+    |+..||+.++..|+..
T Consensus       166 M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~  223 (501)
T 4g26_A          166 MVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE  223 (501)
T ss_dssp             HHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred             HHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999987    9999999999988764

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.97  E-value=3.6e-26  Score=213.63  Aligned_cols=367  Identities=9%  Similarity=-0.020  Sum_probs=313.9

Q ss_pred             CChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 048269           51 LSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNF  130 (465)
Q Consensus        51 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  130 (465)
                      ++++.|...|..++...|.   +...+..+...+...|++++|...++...+.++.+..+|..+...+.+.|++++|+..
T Consensus        13 g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~   89 (388)
T 1w3b_A           13 GDFEAAERHCMQLWRQEPD---NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEH   89 (388)
T ss_dssp             TCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHH
Confidence            4788999999998666655   7888888999999999999999999999998888889999999999999999999999


Q ss_pred             HHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 048269          131 FHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEP  210 (465)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~  210 (465)
                      |+.+.+.. +.+..+|..+..++.+.|++++|.+.|+++....+.+...+..+...+...|++++|.+.|+++.+.. +-
T Consensus        90 ~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~  167 (388)
T 1w3b_A           90 YRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PN  167 (388)
T ss_dssp             HHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TT
T ss_pred             HHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CC
Confidence            99998864 55677899999999999999999999999884445567788889999999999999999999998863 33


Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048269          211 SIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSII  290 (465)
Q Consensus       211 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li  290 (465)
                      +..+|..+...+.+.|++++|.+.|+++...  .|.+...|..+...+...|++++|...+++...... .+..++..+.
T Consensus       168 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~  244 (388)
T 1w3b_A          168 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL--DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAVVHGNLA  244 (388)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CCHHHHHHHH
Confidence            5788999999999999999999999999876  555778899999999999999999999999887632 3578899999


Q ss_pred             HHHHhcCCHHHHHHHHHHhcC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccCCCC
Q 048269          291 YGLLARGRLREAYKVVEEIEK---PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKG  367 (465)
Q Consensus       291 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~  367 (465)
                      ..|.+.|++++|...|+++.+   .+..+|..+...+.+.|++++|.+.|+++.+.. +.+..                 
T Consensus       245 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~-----------------  306 (388)
T 1w3b_A          245 CVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHAD-----------------  306 (388)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHH-----------------
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHH-----------------
Confidence            999999999999999999876   457789999999999999999999999998652 22333                 


Q ss_pred             CCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHhhccchHHHHHHHHHHHHcCCCCchhHHH
Q 048269          368 PDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEV-PRFDYNKFLHYYSNEEGVVMFEEVGKKLREVGLADLADIFQ  446 (465)
Q Consensus       368 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~  446 (465)
                            +|..+...+.+.|++++|.+.++++.+.  .| +..++..+...+.+.|++++|...++++.+.. +.....|.
T Consensus       307 ------~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~a~~  377 (388)
T 1w3b_A          307 ------SLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYS  377 (388)
T ss_dssp             ------HHHHHHHHHHTTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHH
T ss_pred             ------HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHH
Confidence                  3445566679999999999999999873  45 46689999999999999999999999999864 23455565


Q ss_pred             HHHHHH
Q 048269          447 RYGKKM  452 (465)
Q Consensus       447 ~~~~~~  452 (465)
                      .+|...
T Consensus       378 ~lg~~~  383 (388)
T 1w3b_A          378 NMGNTL  383 (388)
T ss_dssp             HHHHHH
T ss_pred             hHHHHH
Confidence            666543

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.96  E-value=1.6e-25  Score=209.29  Aligned_cols=361  Identities=11%  Similarity=0.008  Sum_probs=301.6

Q ss_pred             HhhhhhCCCCCCHHHHHHHHhcCCCChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCC
Q 048269           27 HSSLSSCNFNLTHEFFLQICNNFPLSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLV  106 (465)
Q Consensus        27 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  106 (465)
                      ...++..|...........+....++.+.|..+++.++...+.   +..+|..+...+.+.|++++|.+.|+++.+..+.
T Consensus        23 ~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~   99 (388)
T 1w3b_A           23 MQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL---LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPD   99 (388)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---chHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcc
Confidence            3344444444334444444444456889999999998666554   8999999999999999999999999999988877


Q ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHH
Q 048269          107 NDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKG  186 (465)
Q Consensus       107 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~  186 (465)
                      +..+|..+..++.+.|++++|++.|+.+.+.. +.+...+..+...+...|++++|.+.|+++....+.+..+|..+...
T Consensus       100 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  178 (388)
T 1w3b_A          100 FIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCV  178 (388)
T ss_dssp             CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            78899999999999999999999999999865 44566778888999999999999999999985456678999999999


Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHH
Q 048269          187 YCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQ  266 (465)
Q Consensus       187 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~  266 (465)
                      +...|++++|...|+++.+.+ +.+...|..+...+...|++++|.+.|++....  .|.+..++..+..+|...|++++
T Consensus       179 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~  255 (388)
T 1w3b_A          179 FNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAVVHGNLACVYYEQGLIDL  255 (388)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCHHHHHHHHHHHHHcCCHHH
Confidence            999999999999999999864 335788999999999999999999999999876  56578899999999999999999


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048269          267 AYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK---PDISLYHGLIKGLLRLRRAREATQVFREMIKR  343 (465)
Q Consensus       267 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  343 (465)
                      |...|+++.+.+. .+..++..+...+.+.|++++|...|+++.+   .+..++..+...+.+.|++++|...|+++.+.
T Consensus       256 A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  334 (388)
T 1w3b_A          256 AIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV  334 (388)
T ss_dssp             HHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            9999999998743 3577899999999999999999999999887   67788999999999999999999999999853


Q ss_pred             CCCCCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHhhcc
Q 048269          344 GCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVP-RFDYNKFLHYYSNEE  421 (465)
Q Consensus       344 ~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g  421 (465)
                        .|+.                      ..+|..+...|.+.|++++|.+.|+++.+  +.|+ ...|..+...+...|
T Consensus       335 --~p~~----------------------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~a~~~lg~~~~~~~  387 (388)
T 1w3b_A          335 --FPEF----------------------AAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQ  387 (388)
T ss_dssp             --CTTC----------------------HHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTC
T ss_pred             --CCCc----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHhHHHHHHHcc
Confidence              4432                      22344556667999999999999999997  5665 446766666665544

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.93  E-value=7.2e-23  Score=195.12  Aligned_cols=329  Identities=12%  Similarity=0.020  Sum_probs=269.9

Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 048269           73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKT  152 (465)
Q Consensus        73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~  152 (465)
                      +...+..+...+.+.|++++|+.+|+.+.+..+.+..++..+..++...|++++|+..|+.+.+.+ +.+..++..+..+
T Consensus        25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~  103 (450)
T 2y4t_A           25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHL  103 (450)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHH
Confidence            788899999999999999999999999998887788999999999999999999999999999875 5678889999999


Q ss_pred             HHcCCCHHHHHHHHHHhhcCCCCCH---HhHHHHHH------------HHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHH
Q 048269          153 LCQRKLVVEAKYLILKLSEWIKPNE---IAYGWLIK------------GYCDVGDLIEASKIWNLMTDEGFEPSIDVVDK  217 (465)
Q Consensus       153 ~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~li~------------~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~  217 (465)
                      |.+.|++++|.+.|+++....+.+.   ..+..+..            .+...|++++|...|+.+.+.. +.+..++..
T Consensus       104 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~  182 (450)
T 2y4t_A          104 LLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELREL  182 (450)
T ss_dssp             HHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHH
Confidence            9999999999999999985445555   66666644            4889999999999999998764 447888999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH--------
Q 048269          218 MIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSI--------  289 (465)
Q Consensus       218 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l--------  289 (465)
                      +..+|.+.|++++|.++|+.+...  .|.+..++..+..+|...|++++|...|+++..... .+...+..+        
T Consensus       183 l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~  259 (450)
T 2y4t_A          183 RAECFIKEGEPRKAISDLKAASKL--KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQVKKLNK  259 (450)
T ss_dssp             HHHHHHHTTCGGGGHHHHHHHHHH--HCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHH
Confidence            999999999999999999999876  444788999999999999999999999999987632 234444444        


Q ss_pred             ----HHHHHhcCCHHHHHHHHHHhcC--CC-----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 048269          290 ----IYGLLARGRLREAYKVVEEIEK--PD-----ISLYHGLIKGLLRLRRAREATQVFREMIKRGCEP-TMHTYIMLLQ  357 (465)
Q Consensus       290 ----i~~~~~~~~~~~a~~~~~~~~~--~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~  357 (465)
                          ...|.+.|++++|...|+++..  |+     ...|..+...+.+.|++++|+..++++.+.  .| +...      
T Consensus       260 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~------  331 (450)
T 2y4t_A          260 LIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM--EPDNVNA------  331 (450)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHH------
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHH------
Confidence                7889999999999999999977  54     447888899999999999999999998865  34 3333      


Q ss_pred             HhhcccCCCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh-hHHHHHHH------------Hhhcc---
Q 048269          358 GHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRF-DYNKFLHY------------YSNEE---  421 (465)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~------------~~~~g---  421 (465)
                                       |..+..+|...|++++|.+.++++.+  +.|+.. .+..+..+            |...|   
T Consensus       332 -----------------~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~  392 (450)
T 2y4t_A          332 -----------------LKDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKR  392 (450)
T ss_dssp             -----------------HHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSST
T ss_pred             -----------------HHHHHHHHHHhcCHHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCc
Confidence                             34455556999999999999999997  567544 55555532            32233   


Q ss_pred             --chHHHHHHHHHH
Q 048269          422 --GVVMFEEVGKKL  433 (465)
Q Consensus       422 --~~~~a~~~~~~~  433 (465)
                        +.+++.+.++++
T Consensus       393 ~~~~~~~~~~y~~~  406 (450)
T 2y4t_A          393 NAKKQEIIKAYRKL  406 (450)
T ss_dssp             TCCTTHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHH
Confidence              556677777763

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.92  E-value=9.6e-22  Score=187.31  Aligned_cols=333  Identities=14%  Similarity=0.035  Sum_probs=265.7

Q ss_pred             hhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHh
Q 048269           90 IDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKL  169 (465)
Q Consensus        90 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m  169 (465)
                      ...+...+......++.+..++..++..+.+.|++++|+.+|+.+.+.. +.+..++..+..++...|++++|+..|+++
T Consensus         8 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a   86 (450)
T 2y4t_A            8 SSGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKV   86 (450)
T ss_dssp             ---------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cccccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            3445556666666666677889999999999999999999999998864 567899999999999999999999999999


Q ss_pred             hcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCc-H---HHHHHH------------HHHHHhcCCHHHHHH
Q 048269          170 SEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPS-I---DVVDKM------------IETFFKINKDDEAMK  233 (465)
Q Consensus       170 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~---~~~~~l------------i~~~~~~g~~~~A~~  233 (465)
                      ....+.+..++..+..+|.+.|++++|...|+.+.+..  |+ .   ..+..+            ...+.+.|++++|.+
T Consensus        87 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~  164 (450)
T 2y4t_A           87 IQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIA  164 (450)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            84446778999999999999999999999999998863  43 3   555555            445899999999999


Q ss_pred             HHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC--
Q 048269          234 VFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK--  311 (465)
Q Consensus       234 ~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--  311 (465)
                      .|+.+...  .|.+..++..+..+|.+.|++++|..+|+++.+.. +.+..++..+...|...|++++|...|+++..  
T Consensus       165 ~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  241 (450)
T 2y4t_A          165 FLDKILEV--CVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD  241 (450)
T ss_dssp             HHHHHHHH--CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHh--CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            99999876  45478899999999999999999999999998763 34688999999999999999999999999877  


Q ss_pred             C-CHhhHHHH------------HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccCCCCCCCchHHHHHH
Q 048269          312 P-DISLYHGL------------IKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIF  378 (465)
Q Consensus       312 ~-~~~~~~~l------------i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~l  378 (465)
                      | +...+..+            ...|.+.|++++|...|+++.+.  .|+...+..                  ..|..+
T Consensus       242 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~------------------~~~~~l  301 (450)
T 2y4t_A          242 QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTV------------------RSKERI  301 (450)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHH------------------HHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHH------------------HHHHHH
Confidence            4 34444444            78899999999999999999864  455322111                  124456


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHhhccchHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 048269          379 VGGLVKAGKSLDAAKYVERVMNRGVEV-PRFDYNKFLHYYSNEEGVVMFEEVGKKLREVGLADLADIFQRYGKK  451 (465)
Q Consensus       379 i~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~~~~~  451 (465)
                      ...+.+.|++++|++.++++.+.  .| +...|..+..+|...|++++|...++++.+..- -....+..++..
T Consensus       302 ~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~  372 (450)
T 2y4t_A          302 CHCFSKDEKPVEAIRVCSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNE-NDQQIREGLEKA  372 (450)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS-SCHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-chHHHHHHHHHH
Confidence            77789999999999999999874  45 567999999999999999999999999998642 235556666643

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.92  E-value=5.1e-22  Score=192.51  Aligned_cols=358  Identities=8%  Similarity=-0.043  Sum_probs=293.9

Q ss_pred             CChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 048269           51 LSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNF  130 (465)
Q Consensus        51 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  130 (465)
                      ++++.|+..|+.++...    |+..+|..+..++.+.|++++|...++++.+.++.+..++..+..++.+.|++++|+..
T Consensus        20 g~~~~A~~~~~~al~~~----p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~   95 (514)
T 2gw1_A           20 KKYDDAIKYYNWALELK----EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFD   95 (514)
T ss_dssp             SCHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhcC----ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            48899999999985544    58999999999999999999999999999998888888999999999999999999999


Q ss_pred             HHHhhhCCCCCC--------------------------------------------------------------------
Q 048269          131 FHIMNDCGCEYS--------------------------------------------------------------------  142 (465)
Q Consensus       131 ~~~~~~~~~~~~--------------------------------------------------------------------  142 (465)
                      |+.+.+.+. ++                                                                    
T Consensus        96 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (514)
T 2gw1_A           96 LSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPE  174 (514)
T ss_dssp             HHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCC
T ss_pred             HHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHH
Confidence            999877541 11                                                                    


Q ss_pred             -----------HHHHHHHHHHHHc---CCCHHHHHHHHHHhhc-----C--C-------CCCHHhHHHHHHHHHhcCCHH
Q 048269          143 -----------LEMLNKVVKTLCQ---RKLVVEAKYLILKLSE-----W--I-------KPNEIAYGWLIKGYCDVGDLI  194 (465)
Q Consensus       143 -----------~~~~~~ll~~~~~---~~~~~~a~~~~~~m~~-----~--~-------~~~~~~~~~li~~~~~~g~~~  194 (465)
                                 ...+......+..   .|++++|+.+|+++..     .  .       +.+..++..+...+...|+++
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (514)
T 2gw1_A          175 LTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPL  254 (514)
T ss_dssp             CCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHH
T ss_pred             HHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHH
Confidence                       2333333333443   8999999999999874     2  1       334677888899999999999


Q ss_pred             HHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 048269          195 EASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEM  274 (465)
Q Consensus       195 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m  274 (465)
                      +|...|+.+.+..  |+...+..+..++...|++++|.+.++.+...  .|.+..++..+...+...|++++|...++++
T Consensus       255 ~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  330 (514)
T 2gw1_A          255 GAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKL--DSNNSSVYYHRGQMNFILQNYDQAGKDFDKA  330 (514)
T ss_dssp             HHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTT--CTTCTHHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred             HHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhc--CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            9999999998874  44888899999999999999999999999865  4547788999999999999999999999999


Q ss_pred             HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 048269          275 FKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK---PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHT  351 (465)
Q Consensus       275 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~  351 (465)
                      .+.... +...+..+...+...|++++|...++++.+   .+...+..+...|...|++++|...|+++.+..  |+.. 
T Consensus       331 ~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~-  406 (514)
T 2gw1_A          331 KELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELE--NKLD-  406 (514)
T ss_dssp             HHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HTSS-
T ss_pred             HHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh--hccc-
Confidence            887433 677888899999999999999999998876   456788889999999999999999999987541  1110 


Q ss_pred             HHHHHHHhhcccCCCCCCCchHHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhccchHHHHH
Q 048269          352 YIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVK---AGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNEEGVVMFEE  428 (465)
Q Consensus       352 ~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~  428 (465)
                                     ........|..+...+..   .|++++|.+.++++.+.. ..+..++..+...+.+.|++++|..
T Consensus       407 ---------------~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~  470 (514)
T 2gw1_A          407 ---------------GIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAIT  470 (514)
T ss_dssp             ---------------SCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             ---------------hHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHH
Confidence                           000012245566677789   999999999999998742 2356688999999999999999999


Q ss_pred             HHHHHHHcC
Q 048269          429 VGKKLREVG  437 (465)
Q Consensus       429 ~~~~~~~~g  437 (465)
                      .+++..+.+
T Consensus       471 ~~~~a~~~~  479 (514)
T 2gw1_A          471 LFEESADLA  479 (514)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHhc
Confidence            999999985

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.90  E-value=8.4e-21  Score=185.03  Aligned_cols=360  Identities=9%  Similarity=-0.019  Sum_probs=282.2

Q ss_pred             CChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 048269           51 LSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNF  130 (465)
Q Consensus        51 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  130 (465)
                      ++++.|+..|+.++...|.   ++..|..+..++.+.|++++|++.|+++.+.++.+..++..+..++...|++++|+..
T Consensus        39 g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~  115 (537)
T 3fp2_A           39 KNFNEAIKYYQYAIELDPN---EPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFD  115 (537)
T ss_dssp             TCCC-CHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhhCCC---CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence            4788999999999776655   8999999999999999999999999999998888888999999999999999999999


Q ss_pred             HHHhhhCCCC------------------------------------CCHH------------------------------
Q 048269          131 FHIMNDCGCE------------------------------------YSLE------------------------------  144 (465)
Q Consensus       131 ~~~~~~~~~~------------------------------------~~~~------------------------------  144 (465)
                      |+.+....-.                                    |+..                              
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (537)
T 3fp2_A          116 LSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYAL  195 (537)
T ss_dssp             HHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHH
T ss_pred             HHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHH
Confidence            9644221100                                    1110                              


Q ss_pred             HHHHHHHHHHcC--------CCHHHHHHHHHHhhcCCCCCH-------HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 048269          145 MLNKVVKTLCQR--------KLVVEAKYLILKLSEWIKPNE-------IAYGWLIKGYCDVGDLIEASKIWNLMTDEGFE  209 (465)
Q Consensus       145 ~~~~ll~~~~~~--------~~~~~a~~~~~~m~~~~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~  209 (465)
                      ....+...+...        |++++|..+++++....+.+.       .++..+...+...|++++|...|+.+.+.  .
T Consensus       196 ~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~  273 (537)
T 3fp2_A          196 LSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--H  273 (537)
T ss_dssp             HHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--C
Confidence            111222222221        478899999999884444443       35667778888999999999999999986  4


Q ss_pred             CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048269          210 PSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSI  289 (465)
Q Consensus       210 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l  289 (465)
                      |+...+..+...+...|++++|.+.++.+...  .|.+..++..+...+...|++++|...++++.+... .+...+..+
T Consensus       274 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l  350 (537)
T 3fp2_A          274 PTPNSYIFLALTLADKENSQEFFKFFQKAVDL--NPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP-ENVYPYIQL  350 (537)
T ss_dssp             CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCSHHHHHH
T ss_pred             CCchHHHHHHHHHHHhcCHHHHHHHHHHHhcc--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCHHHHHHH
Confidence            66888999999999999999999999999876  454788899999999999999999999999988643 256788889


Q ss_pred             HHHHHhcCCHHHHHHHHHHhcC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccCCC
Q 048269          290 IYGLLARGRLREAYKVVEEIEK---PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRK  366 (465)
Q Consensus       290 i~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~  366 (465)
                      ...|...|++++|...++++.+   .+...+..+...+...|++++|...|+++.+..  |+...               
T Consensus       351 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~--~~~~~---------------  413 (537)
T 3fp2_A          351 ACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE--EVQEK---------------  413 (537)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHCSS---------------
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--Ccchh---------------
Confidence            9999999999999999999877   556788899999999999999999999987642  11000               


Q ss_pred             CCCCchHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHhhccchHHHHHHHHHHHH
Q 048269          367 GPDPLVNFDTIFVGGLVKA----------GKSLDAAKYVERVMNRGVEV-PRFDYNKFLHYYSNEEGVVMFEEVGKKLRE  435 (465)
Q Consensus       367 ~~~~~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  435 (465)
                       .......+..+...+...          |++++|...++++.+.  .| +...+..+...+.+.|++++|.+.+++..+
T Consensus       414 -~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  490 (537)
T 3fp2_A          414 -IHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL--DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI  490 (537)
T ss_dssp             -CSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             -hHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence             000111122334455677          9999999999999974  44 566899999999999999999999999998


Q ss_pred             cCC
Q 048269          436 VGL  438 (465)
Q Consensus       436 ~g~  438 (465)
                      ..-
T Consensus       491 ~~~  493 (537)
T 3fp2_A          491 LAR  493 (537)
T ss_dssp             HC-
T ss_pred             hCC
Confidence            853

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.90  E-value=1.9e-20  Score=181.39  Aligned_cols=352  Identities=10%  Similarity=-0.053  Sum_probs=268.6

Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 048269           73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKT  152 (465)
Q Consensus        73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~  152 (465)
                      +...+......+.+.|++++|+..|+++.+.+ |+..++..+..++.+.|++++|+..++.+.+.+ +.+..++..+..+
T Consensus         5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~   82 (514)
T 2gw1_A            5 YALALKDKGNQFFRNKKYDDAIKYYNWALELK-EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA   82 (514)
T ss_dssp             HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence            34567788899999999999999999999877 478899999999999999999999999999875 6678899999999


Q ss_pred             HHcCCCHHHHHHHHHHhhcCCCCC--------------------------------------------------------
Q 048269          153 LCQRKLVVEAKYLILKLSEWIKPN--------------------------------------------------------  176 (465)
Q Consensus       153 ~~~~~~~~~a~~~~~~m~~~~~~~--------------------------------------------------------  176 (465)
                      +...|++++|...|+++....+++                                                        
T Consensus        83 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (514)
T 2gw1_A           83 NEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT  162 (514)
T ss_dssp             HHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred             HHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence            999999999999999987222222                                                        


Q ss_pred             -----------------------HHhHHHHHHHHHh---cCCHHHHHHHHHHHHH-----CCC--------CCcHHHHHH
Q 048269          177 -----------------------EIAYGWLIKGYCD---VGDLIEASKIWNLMTD-----EGF--------EPSIDVVDK  217 (465)
Q Consensus       177 -----------------------~~~~~~li~~~~~---~g~~~~a~~~~~~m~~-----~g~--------~~~~~~~~~  217 (465)
                                             ...+..+...+..   .|++++|...|+++.+     ..-        +.+..++..
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (514)
T 2gw1_A          163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH  242 (514)
T ss_dssp             HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence                                   2222233333333   7888888888888877     211        123566777


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048269          218 MIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARG  297 (465)
Q Consensus       218 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~  297 (465)
                      +...+...|++++|.+.|+.+...  .| +..++..+..++...|++++|...++++..... .+...+..+...|...|
T Consensus       243 ~~~~~~~~~~~~~A~~~~~~~l~~--~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~  318 (514)
T 2gw1_A          243 TGIFKFLKNDPLGAHEDIKKAIEL--FP-RVNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQ  318 (514)
T ss_dssp             HHHHHHHSSCHHHHHHHHHHHHHH--CC-CHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTT
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhh--Cc-cHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhC
Confidence            888888888888888888888766  45 367778888888888888888888888876632 35667778888888888


Q ss_pred             CHHHHHHHHHHhcC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccCCCCCCCchHH
Q 048269          298 RLREAYKVVEEIEK---PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNF  374 (465)
Q Consensus       298 ~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~  374 (465)
                      ++++|...++++..   .+...+..+...|...|++++|...++++.+.  .|+                      +...
T Consensus       319 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~----------------------~~~~  374 (514)
T 2gw1_A          319 NYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPE----------------------APEV  374 (514)
T ss_dssp             CTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STT----------------------CSHH
T ss_pred             CHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--ccc----------------------CHHH
Confidence            88888888888765   45667777888888888888888888888754  222                      2334


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HhhHHHHHHHHhh---ccchHHHHHHHHHHHHcCCCCchhHHH
Q 048269          375 DTIFVGGLVKAGKSLDAAKYVERVMNRGV-EVP----RFDYNKFLHYYSN---EEGVVMFEEVGKKLREVGLADLADIFQ  446 (465)
Q Consensus       375 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~g~~~~~~~~~  446 (465)
                      |..+...|...|++++|.+.++++.+..- .++    ...+..+...+..   .|++++|...+++..+..- .....+.
T Consensus       375 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~  453 (514)
T 2gw1_A          375 PNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDP-RSEQAKI  453 (514)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCc-ccHHHHH
Confidence            55566777999999999999999986321 111    3388899999999   9999999999999998752 2344555


Q ss_pred             HHHHHHhHH
Q 048269          447 RYGKKMATR  455 (465)
Q Consensus       447 ~~~~~~~~~  455 (465)
                      .++......
T Consensus       454 ~la~~~~~~  462 (514)
T 2gw1_A          454 GLAQMKLQQ  462 (514)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHh
Confidence            555544433

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.89  E-value=2e-19  Score=165.62  Aligned_cols=318  Identities=11%  Similarity=0.005  Sum_probs=197.8

Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 048269           73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKT  152 (465)
Q Consensus        73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~  152 (465)
                      |+..+..+...+...|++++|+..|+++.+.++.+..++..+...+...|++++|+..|+.+.+.. +.+...+..+..+
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~   80 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL   80 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence            456778888889999999999999999988877778888889999999999999999999888764 4467888888888


Q ss_pred             HHcCCCHHHHHHHHHHhhcCCC---CCHHhHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHH
Q 048269          153 LCQRKLVVEAKYLILKLSEWIK---PNEIAYGWL------------IKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDK  217 (465)
Q Consensus       153 ~~~~~~~~~a~~~~~~m~~~~~---~~~~~~~~l------------i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~  217 (465)
                      +...|++++|...|++.....+   .+...+..+            ...+...|++++|...++.+.+.. +.+...+..
T Consensus        81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~  159 (359)
T 3ieg_A           81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELREL  159 (359)
T ss_dssp             HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred             HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHH
Confidence            9999999999999998874334   355555544            456666677777777777766543 235566666


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048269          218 MIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARG  297 (465)
Q Consensus       218 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~  297 (465)
                      +..++...|++++|.+.++.+...  .|.+..++..+...+...|++++|...+++..+.... +...+..+...-    
T Consensus       160 ~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~----  232 (359)
T 3ieg_A          160 RAECFIKEGEPRKAISDLKAASKL--KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVK----  232 (359)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTT--CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH----
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHH----
Confidence            667777777777777777766654  3435666666667777777777777777666654221 222221110000    


Q ss_pred             CHHHHHHHHHHhcCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccCCCCCCCchHHHHH
Q 048269          298 RLREAYKVVEEIEKPDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTI  377 (465)
Q Consensus       298 ~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~  377 (465)
                                     .......+...+.+.|++++|...++++.+..  |+...+.......                  
T Consensus       233 ---------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~------------------  277 (359)
T 3ieg_A          233 ---------------KLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKER------------------  277 (359)
T ss_dssp             ---------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHH------------------
T ss_pred             ---------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHH------------------
Confidence                           00001112334555555555555555555432  2222111111110                  


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHhhccchHHHHHHHHHHHHc
Q 048269          378 FVGGLVKAGKSLDAAKYVERVMNRGVEV-PRFDYNKFLHYYSNEEGVVMFEEVGKKLREV  436 (465)
Q Consensus       378 li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  436 (465)
                      +...+...|++++|.+.+++..+.  .| +..++..+...+...|++++|...+++..+.
T Consensus       278 la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~  335 (359)
T 3ieg_A          278 ICHCFSKDEKPVEAIRICSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH  335 (359)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            122345555666666666555542  23 3445555555555556666666666655554

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.89  E-value=7.3e-19  Score=161.78  Aligned_cols=300  Identities=13%  Similarity=0.063  Sum_probs=176.9

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHH
Q 048269          108 DKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGY  187 (465)
Q Consensus       108 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~  187 (465)
                      ...+..+...+...|++++|+..|+.+.+.. +.+..++..+..++...|++++|...++++....+.+...+..+...+
T Consensus         3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~   81 (359)
T 3ieg_A            3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL   81 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence            3456667777777788888888887777654 445677777777777777777777777777633355667777777777


Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCC----cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCC
Q 048269          188 CDVGDLIEASKIWNLMTDEGFEP----SIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGK  263 (465)
Q Consensus       188 ~~~g~~~~a~~~~~~m~~~g~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~  263 (465)
                      ...|++++|...|+.+.+.  .|    +...+..+.....                        ...+..+...+...|+
T Consensus        82 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~------------------------~~~~~~~a~~~~~~~~  135 (359)
T 3ieg_A           82 LKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADE------------------------MQRLRSQALDAFDGAD  135 (359)
T ss_dssp             HHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHTTC
T ss_pred             HHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHH------------------------HHHHHHHHHHHHHccC
Confidence            7777777777777777765  23    2333333310000                        0001112334444444


Q ss_pred             hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 048269          264 ISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK---PDISLYHGLIKGLLRLRRAREATQVFREM  340 (465)
Q Consensus       264 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m  340 (465)
                      +++|..+++++.+.. +.+...+..+...+...|++++|...++++..   .+...+..+...+...|++++|...|++.
T Consensus       136 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  214 (359)
T 3ieg_A          136 YTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVREC  214 (359)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            555555444444432 12344444444445555555555555554443   33444555555555556666666666555


Q ss_pred             HHcCCCCCH-HHHHHHH-----HHhhcccCCCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh-----h
Q 048269          341 IKRGCEPTM-HTYIMLL-----QGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRF-----D  409 (465)
Q Consensus       341 ~~~~~~p~~-~~~~~ll-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-----~  409 (465)
                      .+.  .|+. ..+..+.     ...                ..+...+.+.|++++|.+.++++.+.  .|+..     .
T Consensus       215 ~~~--~~~~~~~~~~~~~~~~~~~~----------------~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~  274 (359)
T 3ieg_A          215 LKL--DQDHKRCFAHYKQVKKLNKL----------------IESAEELIRDGRYTDATSKYESVMKT--EPSVAEYTVRS  274 (359)
T ss_dssp             HHH--CTTCHHHHHHHHHHHHHHHH----------------HHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHH
T ss_pred             Hhh--CccchHHHHHHHHHHHHHHH----------------HHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHH
Confidence            543  2221 1111110     001                01234568999999999999999984  34432     3


Q ss_pred             HHHHHHHHhhccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHhHHh
Q 048269          410 YNKFLHYYSNEEGVVMFEEVGKKLREVGLADLADIFQRYGKKMATRE  456 (465)
Q Consensus       410 ~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  456 (465)
                      +..+...+...|++++|...+++..+.. ......+..+|......+
T Consensus       275 ~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g  320 (359)
T 3ieg_A          275 KERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEE  320 (359)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcC
Confidence            5567788999999999999999999874 224556666665544433

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.87  E-value=2.1e-18  Score=168.08  Aligned_cols=352  Identities=11%  Similarity=-0.021  Sum_probs=265.8

Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 048269           73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKT  152 (465)
Q Consensus        73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~  152 (465)
                      ....|..+...+.+.|++++|++.|+++.+.++.+..++..+..++.+.|++++|++.|+.+.+.+ +.+..++..+..+
T Consensus        24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~  102 (537)
T 3fp2_A           24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA  102 (537)
T ss_dssp             HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence            346678888999999999999999999999988889999999999999999999999999999875 5678899999999


Q ss_pred             HHcCCCHHHHHHHHHHhh-cCCCCC------------------------------------HH-----------------
Q 048269          153 LCQRKLVVEAKYLILKLS-EWIKPN------------------------------------EI-----------------  178 (465)
Q Consensus       153 ~~~~~~~~~a~~~~~~m~-~~~~~~------------------------------------~~-----------------  178 (465)
                      +...|++++|+..|+.+. ....++                                    ..                 
T Consensus       103 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (537)
T 3fp2_A          103 NESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSS  182 (537)
T ss_dssp             HHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHT
T ss_pred             HHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHH
Confidence            999999999999997553 111111                                    00                 


Q ss_pred             -------------hHHHHHHHHHh--------cCCHHHHHHHHHHHHHCCCCCc--------HHHHHHHHHHHHhcCCHH
Q 048269          179 -------------AYGWLIKGYCD--------VGDLIEASKIWNLMTDEGFEPS--------IDVVDKMIETFFKINKDD  229 (465)
Q Consensus       179 -------------~~~~li~~~~~--------~g~~~~a~~~~~~m~~~g~~~~--------~~~~~~li~~~~~~g~~~  229 (465)
                                   ....+...+..        .|++++|..+|+.+.+..  |+        ..++..+...+...|+++
T Consensus       183 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~  260 (537)
T 3fp2_A          183 VNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKNNLL  260 (537)
T ss_dssp             SCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcccHH
Confidence                         11111111111        147888888888887753  33        335677777888889999


Q ss_pred             HHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 048269          230 EAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEI  309 (465)
Q Consensus       230 ~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~  309 (465)
                      +|.+.|+.....  .| +..++..+...+...|++++|...++++.+... .+..++..+...+...|++++|...|+++
T Consensus       261 ~A~~~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  336 (537)
T 3fp2_A          261 DAQVLLQESINL--HP-TPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKEDFQKA  336 (537)
T ss_dssp             HHHHHHHHHHHH--CC-CHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc--CC-CchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            999999998876  56 577888888889999999999999998887643 36778888889999999999999999988


Q ss_pred             cC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcC
Q 048269          310 EK---PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAG  386 (465)
Q Consensus       310 ~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g  386 (465)
                      ..   .+...+..+...|...|++++|...++++.+..  |+                      +...|..+...+...|
T Consensus       337 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~----------------------~~~~~~~l~~~~~~~g  392 (537)
T 3fp2_A          337 QSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF--PT----------------------LPEVPTFFAEILTDRG  392 (537)
T ss_dssp             HHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT----------------------CTHHHHHHHHHHHHTT
T ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC----------------------ChHHHHHHHHHHHHhC
Confidence            76   456778888889999999999999999988652  32                      2233445566679999


Q ss_pred             CHHHHHHHHHHHHhCCC-----CCCHhhHHHHHHHHhhc----------cchHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 048269          387 KSLDAAKYVERVMNRGV-----EVPRFDYNKFLHYYSNE----------EGVVMFEEVGKKLREVGLADLADIFQRYGKK  451 (465)
Q Consensus       387 ~~~~A~~~~~~m~~~~~-----~p~~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~g~~~~~~~~~~~~~~  451 (465)
                      ++++|.+.++++.+..-     ......+......+...          |++++|...+++..+..- .....+..++..
T Consensus       393 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~  471 (537)
T 3fp2_A          393 DFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDP-RSEQAKIGLAQL  471 (537)
T ss_dssp             CHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence            99999999999876321     11112244455667777          999999999999998753 234556566654


Q ss_pred             HhHHh
Q 048269          452 MATRE  456 (465)
Q Consensus       452 ~~~~~  456 (465)
                      ....+
T Consensus       472 ~~~~g  476 (537)
T 3fp2_A          472 KLQME  476 (537)
T ss_dssp             HHHTT
T ss_pred             HHHhc
Confidence            44433

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.86  E-value=4.9e-19  Score=161.05  Aligned_cols=274  Identities=9%  Similarity=-0.055  Sum_probs=228.5

Q ss_pred             CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHH
Q 048269           70 FAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKV  149 (465)
Q Consensus        70 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  149 (465)
                      ...+...+..+...+...|++++|.++|+++.+.++.+..++..++..+...|++++|...++.+.+.. +.+...+..+
T Consensus        18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l   96 (330)
T 3hym_B           18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV   96 (330)
T ss_dssp             --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence            345677788888899999999999999999988887777778888888899999999999999988864 5567788888


Q ss_pred             HHHHHcCC-CHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCH
Q 048269          150 VKTLCQRK-LVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKD  228 (465)
Q Consensus       150 l~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~  228 (465)
                      ...+...| ++++|.+.|++.....+.+...|..+...+...|++++|...|+.+.+.. +.+...+..+...+...|++
T Consensus        97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~  175 (330)
T 3hym_B           97 GCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNS  175 (330)
T ss_dssp             HHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhH
Confidence            89999999 89999999999885556677889999999999999999999999988764 23456677788999999999


Q ss_pred             HHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHhcCCHH
Q 048269          229 DEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRG--------IEADNLTLSSIIYGLLARGRLR  300 (465)
Q Consensus       229 ~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--------~~~~~~~~~~li~~~~~~~~~~  300 (465)
                      ++|.+.+++..+.  .|.+..++..+...+...|++++|...++++.+..        .+....++..+...|...|+++
T Consensus       176 ~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  253 (330)
T 3hym_B          176 KLAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA  253 (330)
T ss_dssp             HHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence            9999999998865  45477889999999999999999999998887631        1334578888999999999999


Q ss_pred             HHHHHHHHhcC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 048269          301 EAYKVVEEIEK---PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTM  349 (465)
Q Consensus       301 ~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~  349 (465)
                      +|...+++..+   .+...+..+...|...|++++|.+.|++..+  +.|+.
T Consensus       254 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~  303 (330)
T 3hym_B          254 EALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG--LRRDD  303 (330)
T ss_dssp             HHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT--TCSCC
T ss_pred             HHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc--cCCCc
Confidence            99999998876   5667888889999999999999999998874  45643

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.85  E-value=2.1e-18  Score=156.84  Aligned_cols=300  Identities=10%  Similarity=-0.030  Sum_probs=243.1

Q ss_pred             HHhhhhhCCCCCCHHHHHHHHhcCCCChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCC
Q 048269           26 LHSSLSSCNFNLTHEFFLQICNNFPLSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRL  105 (465)
Q Consensus        26 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  105 (465)
                      +...+...+..++............++++.|+.+|+.++...+.   +...+..++..+.+.|++++|...++++.+.++
T Consensus        11 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~   87 (330)
T 3hym_B           11 IPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF---HASCLPVHIGTLVELNKANELFYLSHKLVDLYP   87 (330)
T ss_dssp             ---------CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred             hHHHHhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc
Confidence            45555555555554444444434446899999999998666654   667788888999999999999999999999888


Q ss_pred             CChHHHHHHHHHHHhcC-CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHH
Q 048269          106 VNDKTFKIALMTLAEVR-ELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLI  184 (465)
Q Consensus       106 ~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li  184 (465)
                      .+..++..+...+...| ++++|+..|+...+.. +.+...|..+..++...|++++|.+.+++.....+.+...+..+.
T Consensus        88 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~  166 (330)
T 3hym_B           88 SNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIG  166 (330)
T ss_dssp             TSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHH
Confidence            78889999999999999 9999999999999865 556788999999999999999999999998844455677888899


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-------CCCCcchHHHHHHH
Q 048269          185 KGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRM-------DDLGLSTYRIVIDW  257 (465)
Q Consensus       185 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-------~~~~~~~~~~li~~  257 (465)
                      ..|...|++++|...++...+.. +.+..++..+...+...|++++|.+.+++......       .|....++..+..+
T Consensus       167 ~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~  245 (330)
T 3hym_B          167 LEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHV  245 (330)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHH
Confidence            99999999999999999998864 44678899999999999999999999999876421       13356789999999


Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC---CCHhhHHHHHHHH-HhcCCHH
Q 048269          258 MCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK---PDISLYHGLIKGL-LRLRRAR  331 (465)
Q Consensus       258 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~-~~~~~~~  331 (465)
                      +...|++++|...+++..+... .+...+..+...|...|++++|...|+++.+   .+...+..+..++ ...|+.+
T Consensus       246 ~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~  322 (330)
T 3hym_B          246 CRKLKKYAEALDYHRQALVLIP-QNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE  322 (330)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred             HHHhcCHHHHHHHHHHHHhhCc-cchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence            9999999999999999988643 3678899999999999999999999999987   4566777777777 3455543

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.84  E-value=1e-18  Score=161.70  Aligned_cols=286  Identities=8%  Similarity=-0.060  Sum_probs=235.0

Q ss_pred             CChhHHHH-HHHHHhhcCCCCC-CCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHH
Q 048269           51 LSWRPVYL-FFQYTQKAQPCFA-HNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMV  128 (465)
Q Consensus        51 ~~~~~a~~-~f~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  128 (465)
                      .+.+.|+. .|+.++...+..+ .+...+..+...+.+.|++++|...|+++.+.++.+..++..+..++.+.|++++|+
T Consensus        39 ~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~  118 (368)
T 1fch_A           39 SDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAI  118 (368)
T ss_dssp             -------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence            36677887 8887644333321 145678899999999999999999999999998888899999999999999999999


Q ss_pred             HHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHH---------------HHHHHHhcCCH
Q 048269          129 NFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGW---------------LIKGYCDVGDL  193 (465)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~---------------li~~~~~~g~~  193 (465)
                      ..|+.+.+.. +.+..++..+..++...|++++|...++++....+.+...+..               .+..+...|++
T Consensus       119 ~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (368)
T 1fch_A          119 SALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLF  197 (368)
T ss_dssp             HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHH
T ss_pred             HHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccH
Confidence            9999999875 5688899999999999999999999999988433444444332               23444488999


Q ss_pred             HHHHHHHHHHHHCCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 048269          194 IEASKIWNLMTDEGFEP-SIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLE  272 (465)
Q Consensus       194 ~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~  272 (465)
                      ++|...|+.+.+..... +..++..+...+.+.|++++|.+.|+++...  .|.+..++..+...+...|++++|...|+
T Consensus       198 ~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  275 (368)
T 1fch_A          198 LEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYR  275 (368)
T ss_dssp             HHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            99999999998864221 5889999999999999999999999999876  45477899999999999999999999999


Q ss_pred             HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC--C-C-----------HhhHHHHHHHHHhcCCHHHHHHHHH
Q 048269          273 EMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK--P-D-----------ISLYHGLIKGLLRLRRAREATQVFR  338 (465)
Q Consensus       273 ~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~-----------~~~~~~li~~~~~~~~~~~a~~~~~  338 (465)
                      ++.+.. +.+...+..+..+|.+.|++++|...|+++..  | +           ..+|..+..+|...|++++|..+++
T Consensus       276 ~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  354 (368)
T 1fch_A          276 RALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA  354 (368)
T ss_dssp             HHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred             HHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence            998763 34678899999999999999999999999877  2 2           5789999999999999999998877


Q ss_pred             HH
Q 048269          339 EM  340 (465)
Q Consensus       339 ~m  340 (465)
                      +.
T Consensus       355 ~~  356 (368)
T 1fch_A          355 RD  356 (368)
T ss_dssp             TC
T ss_pred             HH
Confidence            43

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.82  E-value=1.5e-18  Score=160.36  Aligned_cols=263  Identities=8%  Similarity=-0.059  Sum_probs=220.9

Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 048269           73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKT  152 (465)
Q Consensus        73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~  152 (465)
                      +...+..+...+.+.|++++|+..|+++.+..+.+..++..+...+.+.|++++|+..|+++.+.. +.+..++..+..+
T Consensus        64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~  142 (365)
T 4eqf_A           64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS  142 (365)
T ss_dssp             TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence            456689999999999999999999999999888888999999999999999999999999999875 5678899999999


Q ss_pred             HHcCCCHHHHHHHHHHhhcCCCCCH----------HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CcHHHHHHHHHH
Q 048269          153 LCQRKLVVEAKYLILKLSEWIKPNE----------IAYGWLIKGYCDVGDLIEASKIWNLMTDEGFE-PSIDVVDKMIET  221 (465)
Q Consensus       153 ~~~~~~~~~a~~~~~~m~~~~~~~~----------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~  221 (465)
                      |...|++++|+..|+++....+.+.          ..+..+...+...|++++|...|+++.+.... ++..++..+...
T Consensus       143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~  222 (365)
T 4eqf_A          143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL  222 (365)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred             HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence            9999999999999999872212222          23344588899999999999999999986422 168899999999


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 048269          222 FFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLRE  301 (465)
Q Consensus       222 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~  301 (465)
                      +.+.|++++|.+.|++..+.  .|.+..+|..+..+|...|++++|...|+++.+.. +.+..++..+..+|...|++++
T Consensus       223 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~  299 (365)
T 4eqf_A          223 FHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYRE  299 (365)
T ss_dssp             HHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred             HHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence            99999999999999999876  45478899999999999999999999999998863 2358889999999999999999


Q ss_pred             HHHHHHHhcC--CC-------------HhhHHHHHHHHHhcCCHHHHHHHHHH
Q 048269          302 AYKVVEEIEK--PD-------------ISLYHGLIKGLLRLRRAREATQVFRE  339 (465)
Q Consensus       302 a~~~~~~~~~--~~-------------~~~~~~li~~~~~~~~~~~a~~~~~~  339 (465)
                      |...|+++.+  |+             ...|..+..++...|+.+.+..+.++
T Consensus       300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  352 (365)
T 4eqf_A          300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG  352 (365)
T ss_dssp             HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred             HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence            9999999876  22             67789999999999999988877654

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.82  E-value=2.6e-18  Score=158.92  Aligned_cols=285  Identities=8%  Similarity=-0.026  Sum_probs=191.9

Q ss_pred             cCCHHHHHH-HHHHhhhCCC-CC--CHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHH
Q 048269          121 VRELKKMVN-FFHIMNDCGC-EY--SLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEA  196 (465)
Q Consensus       121 ~~~~~~a~~-~~~~~~~~~~-~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a  196 (465)
                      .|++++|++ .|+....... .|  +...+..+...+.+.|++++|...|+++....+.+..++..+...+...|++++|
T Consensus        38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A  117 (368)
T 1fch_A           38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLA  117 (368)
T ss_dssp             --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHH
Confidence            356666666 6655443211 01  2344556666666777777777777776644455666677777777777777777


Q ss_pred             HHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHH---------------HHHHHHhc
Q 048269          197 SKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRI---------------VIDWMCKR  261 (465)
Q Consensus       197 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~---------------li~~~~~~  261 (465)
                      ...|+.+.+.. +.+..++..+..++...|++++|.+.++.+....  |.+...+..               .+..+...
T Consensus       118 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (368)
T 1fch_A          118 ISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD  194 (368)
T ss_dssp             HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHH
T ss_pred             HHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence            77777766653 2356667777777777777777777777776542  212222221               23334488


Q ss_pred             CChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhcC---CCHhhHHHHHHHHHhcCCHHHHHHHH
Q 048269          262 GKISQAYTMLEEMFKRGIEA-DNLTLSSIIYGLLARGRLREAYKVVEEIEK---PDISLYHGLIKGLLRLRRAREATQVF  337 (465)
Q Consensus       262 ~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~  337 (465)
                      |++++|...++++.+..... +..++..+...|...|++++|...|+++..   .+...|..+...+...|++++|...|
T Consensus       195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  274 (368)
T 1fch_A          195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAY  274 (368)
T ss_dssp             HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            88999999998888764322 577888888889999999999999988776   45678888889999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----------
Q 048269          338 REMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVP-----------  406 (465)
Q Consensus       338 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-----------  406 (465)
                      +++.+.  .|+.                      ...|..+...|.+.|++++|.+.|+++.+.  .|+           
T Consensus       275 ~~al~~--~~~~----------------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~  328 (368)
T 1fch_A          275 RRALEL--QPGY----------------------IRSRYNLGISCINLGAHREAVEHFLEALNM--QRKSRGPRGEGGAM  328 (368)
T ss_dssp             HHHHHH--CTTC----------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHTC------CCCC
T ss_pred             HHHHHh--CCCc----------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCCCccccccch
Confidence            998764  3332                      223444556678999999999999988763  222           


Q ss_pred             -HhhHHHHHHHHhhccchHHHHHHHHHHH
Q 048269          407 -RFDYNKFLHYYSNEEGVVMFEEVGKKLR  434 (465)
Q Consensus       407 -~~~~~~ll~~~~~~g~~~~a~~~~~~~~  434 (465)
                       ..+|..+..++...|+.++|..++++-.
T Consensus       329 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l  357 (368)
T 1fch_A          329 SENIWSTLRLALSMLGQSDAYGAADARDL  357 (368)
T ss_dssp             CHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred             hhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence             5688999999999999999988876433

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.81  E-value=1e-17  Score=152.05  Aligned_cols=264  Identities=6%  Similarity=-0.093  Sum_probs=222.7

Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 048269           73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKT  152 (465)
Q Consensus        73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~  152 (465)
                      +...+..+...+...|++++|..+|+++.+..+.+..++..+...+...|++++|...|+.+.+.. +.+..++..+..+
T Consensus        20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~   98 (327)
T 3cv0_A           20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS   98 (327)
T ss_dssp             GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence            445677888899999999999999999998887788899999999999999999999999998865 5678889999999


Q ss_pred             HHcCCCHHHHHHHHHHhhcCCCCCHHhHHHH--------------HH-HHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHH
Q 048269          153 LCQRKLVVEAKYLILKLSEWIKPNEIAYGWL--------------IK-GYCDVGDLIEASKIWNLMTDEGFEPSIDVVDK  217 (465)
Q Consensus       153 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~l--------------i~-~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~  217 (465)
                      +...|++++|.+.++++....+.+...+..+              .. .+...|++++|...++++.+.. +.+..++..
T Consensus        99 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~  177 (327)
T 3cv0_A           99 HTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHAS  177 (327)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHH
Confidence            9999999999999999884334444444444              33 3778899999999999998864 347888999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048269          218 MIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARG  297 (465)
Q Consensus       218 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~  297 (465)
                      +...+.+.|++++|.+.++++.+.  .|.+..++..+...+...|++++|...++++.+.. +.+...+..+...|...|
T Consensus       178 la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g  254 (327)
T 3cv0_A          178 LGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMS  254 (327)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhc
Confidence            999999999999999999999876  45477889999999999999999999999988764 336788899999999999


Q ss_pred             CHHHHHHHHHHhcC--CC-------------HhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048269          298 RLREAYKVVEEIEK--PD-------------ISLYHGLIKGLLRLRRAREATQVFREMI  341 (465)
Q Consensus       298 ~~~~a~~~~~~~~~--~~-------------~~~~~~li~~~~~~~~~~~a~~~~~~m~  341 (465)
                      ++++|...++++..  |+             ...|..+..++.+.|++++|..++++..
T Consensus       255 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l  313 (327)
T 3cv0_A          255 QYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV  313 (327)
T ss_dssp             CHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred             cHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            99999999998877  44             6788889999999999999999887554

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.81  E-value=6.4e-15  Score=141.62  Aligned_cols=339  Identities=10%  Similarity=-0.013  Sum_probs=247.8

Q ss_pred             CCChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHh----cCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHh----c
Q 048269           50 PLSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGK----SRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAE----V  121 (465)
Q Consensus        50 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~  121 (465)
                      ..+.+.|+..|+.+. .. |   ++..+..|...|..    .+++++|.+.|++..+.+  +...+..+...|..    .
T Consensus        56 ~~~~~~A~~~~~~a~-~~-~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~  128 (490)
T 2xm6_A           56 TKDLTQAMDWFRRAA-EQ-G---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--LPQAQQNLGVMYHEGNGVK  128 (490)
T ss_dssp             CCCHHHHHHHHHHHH-HT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSC
T ss_pred             CcCHHHHHHHHHHHH-HC-C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCC
Confidence            347778888888873 22 3   67777778888877    788888888888877765  44566667777777    6


Q ss_pred             CCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHh----cCCH
Q 048269          122 RELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQ----RKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCD----VGDL  193 (465)
Q Consensus       122 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~----~g~~  193 (465)
                      +++++|+..|+...+.|   +...+..+...|..    .++.++|++.|++....  .+...+..|...|..    .++.
T Consensus       129 ~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~  203 (490)
T 2xm6_A          129 VDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERND  203 (490)
T ss_dssp             CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCH
T ss_pred             CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCH
Confidence            78888888888877754   55666677777766    67788888888877621  356777777777777    7888


Q ss_pred             HHHHHHHHHHHHCCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHh----cCChH
Q 048269          194 IEASKIWNLMTDEGFEPSIDVVDKMIETFFK----INKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCK----RGKIS  265 (465)
Q Consensus       194 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~----~~~~~  265 (465)
                      ++|.+.|+...+.|   +...+..+...|..    .+++++|.+.|+...+.+    +...+..+...|..    .++.+
T Consensus       204 ~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~y~~g~~~~~d~~  276 (490)
T 2xm6_A          204 AISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG----NSIAQFRLGYILEQGLAGAKEPL  276 (490)
T ss_dssp             HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT----CHHHHHHHHHHHHHTTTSSCCHH
T ss_pred             HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHCCCCCCCCHH
Confidence            88888888887764   55666677777765    678888888888777653    44566666777776    77888


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHhcC-CCHhhHHHHHHHHHhcC---CHHHHHHH
Q 048269          266 QAYTMLEEMFKRGIEADNLTLSSIIYGLLAR-----GRLREAYKVVEEIEK-PDISLYHGLIKGLLRLR---RAREATQV  336 (465)
Q Consensus       266 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~~---~~~~a~~~  336 (465)
                      +|..+|++..+.|   +...+..+...|...     ++.++|...|++..+ .+...+..+...|...|   ++++|.+.
T Consensus       277 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~~g~~~~~~~A~~~  353 (490)
T 2xm6_A          277 KALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIYFRLGSEEEHKKAVEW  353 (490)
T ss_dssp             HHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHH
Confidence            8888888877654   455666677777766     788888888887766 55666666777776655   67788888


Q ss_pred             HHHHHHcCCCCCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHhhHHH
Q 048269          337 FREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVK----AGKSLDAAKYVERVMNRGVEVPRFDYNK  412 (465)
Q Consensus       337 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~  412 (465)
                      |++..+.|   +.                       ..+..|...|..    .+++++|.+.|++..+.|   +...+..
T Consensus       354 ~~~a~~~~---~~-----------------------~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~  404 (490)
T 2xm6_A          354 FRKAAAKG---EK-----------------------AAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQ  404 (490)
T ss_dssp             HHHHHHTT---CH-----------------------HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred             HHHHHHCC---CH-----------------------HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHH
Confidence            88877653   22                       233445555666    799999999999999865   4667888


Q ss_pred             HHHHHhh----ccchHHHHHHHHHHHHcCCC
Q 048269          413 FLHYYSN----EEGVVMFEEVGKKLREVGLA  439 (465)
Q Consensus       413 ll~~~~~----~g~~~~a~~~~~~~~~~g~~  439 (465)
                      |...|..    .++.++|...+++..+.|..
T Consensus       405 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~  435 (490)
T 2xm6_A          405 LGEIYYYGLGVERDYVQAWAWFDTASTNDMN  435 (490)
T ss_dssp             HHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence            8888887    79999999999999998743

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.79  E-value=5.6e-18  Score=156.55  Aligned_cols=262  Identities=8%  Similarity=-0.013  Sum_probs=172.1

Q ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHH
Q 048269          144 EMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFF  223 (465)
Q Consensus       144 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~  223 (465)
                      ..+..+...+.+.|++++|+.+|+++....+.+..++..+...|...|++++|+..|+++.+.. +.+..++..+..+|.
T Consensus        66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~  144 (365)
T 4eqf_A           66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYT  144 (365)
T ss_dssp             TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence            3455566666666666666666666663335556666666666666677777777766666542 234566666667777


Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCCCc----------chHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHH
Q 048269          224 KINKDDEAMKVFQMMRVKRMDDLGL----------STYRIVIDWMCKRGKISQAYTMLEEMFKRGIE-ADNLTLSSIIYG  292 (465)
Q Consensus       224 ~~g~~~~A~~~~~~m~~~~~~~~~~----------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~  292 (465)
                      ..|++++|.+.|+++.+.  .|.+.          ..+..+...+...|++++|..+++++.+.... ++..++..+...
T Consensus       145 ~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~  222 (365)
T 4eqf_A          145 NTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL  222 (365)
T ss_dssp             HTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence            777777777777666654  22122          22334467777888888888888887776322 157777888888


Q ss_pred             HHhcCCHHHHHHHHHHhcC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccCCCCCC
Q 048269          293 LLARGRLREAYKVVEEIEK---PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPD  369 (465)
Q Consensus       293 ~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~  369 (465)
                      |...|++++|...|+++.+   .+..+|..+..+|...|++++|...|+++.+.  .|+.                    
T Consensus       223 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~--------------------  280 (365)
T 4eqf_A          223 FHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEI--QPGF--------------------  280 (365)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC--------------------
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCc--------------------
Confidence            8888888888888888766   45677888888888888888888888888764  3432                    


Q ss_pred             CchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CC--------CCHhhHHHHHHHHhhccchHHHHHHHHH
Q 048269          370 PLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRG---VE--------VPRFDYNKFLHYYSNEEGVVMFEEVGKK  432 (465)
Q Consensus       370 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~--------p~~~~~~~ll~~~~~~g~~~~a~~~~~~  432 (465)
                        ...|..+...|.+.|++++|.+.|+++.+..   ..        .+..+|..+..++...|+.+.+..+.++
T Consensus       281 --~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  352 (365)
T 4eqf_A          281 --IRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG  352 (365)
T ss_dssp             --HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred             --hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence              2233445556688899999999998887621   00        0256788888888888988887776654

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.78  E-value=5.5e-14  Score=135.10  Aligned_cols=344  Identities=8%  Similarity=0.023  Sum_probs=281.1

Q ss_pred             HHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHh----cCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHh----cCCHHH
Q 048269           55 PVYLFFQYTQKAQPCFAHNSITFNRMVDIIGK----SRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAE----VRELKK  126 (465)
Q Consensus        55 ~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~  126 (465)
                      .++..+..+  .+.|   ++..+..+...|..    .+++++|...|++..+.|  +...+..+...|..    .+++++
T Consensus        25 ~~~~~~~~~--a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~   97 (490)
T 2xm6_A           25 VNLEQLKQK--AESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG--YTPAEYVLGLRYMNGEGVPQDYAQ   97 (490)
T ss_dssp             CCHHHHHHH--HHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred             HHHHHHHHH--HHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHH
Confidence            345556654  3344   88999999999988    899999999999998875  56678888999998    899999


Q ss_pred             HHHHHHHhhhCCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHh----cCCHHHHHH
Q 048269          127 MVNFFHIMNDCGCEYSLEMLNKVVKTLCQ----RKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCD----VGDLIEASK  198 (465)
Q Consensus       127 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~----~g~~~~a~~  198 (465)
                      |+..|+...+.|   +...+..|...|..    .+++++|+..|++...  .-+...+..|...|..    .+++++|.+
T Consensus        98 A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~  172 (490)
T 2xm6_A           98 AVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAE--QGRDSGQQSMGDAYFEGDGVTRDYVMARE  172 (490)
T ss_dssp             HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred             HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence            999999998865   66777788888888    7899999999999873  1367788888888887    789999999


Q ss_pred             HHHHHHHCCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHh----cCChHHHHHH
Q 048269          199 IWNLMTDEGFEPSIDVVDKMIETFFK----INKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCK----RGKISQAYTM  270 (465)
Q Consensus       199 ~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~  270 (465)
                      .|++..+.|   +...+..+...|..    .+++++|.+.|+...+.+    +...+..+...|..    .+++++|..+
T Consensus       173 ~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~y~~g~g~~~~~~~A~~~  245 (490)
T 2xm6_A          173 WYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG----DELGQLHLADMYYFGIGVTQDYTQSRVL  245 (490)
T ss_dssp             HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred             HHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence            999999875   67888889999888    899999999999988764    55678888888886    7899999999


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhcC-CCHhhHHHHHHHHHhc-----CCHHHHHHHHHHH
Q 048269          271 LEEMFKRGIEADNLTLSSIIYGLLA----RGRLREAYKVVEEIEK-PDISLYHGLIKGLLRL-----RRAREATQVFREM  340 (465)
Q Consensus       271 ~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m  340 (465)
                      |++..+.|   +...+..+...|..    .++.++|...|++..+ .+...+..+...|...     +++++|...|++.
T Consensus       246 ~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a  322 (490)
T 2xm6_A          246 FSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKS  322 (490)
T ss_dssp             HHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHH
T ss_pred             HHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHH
Confidence            99998775   45677777778887    8999999999999887 6777788888888887     8999999999999


Q ss_pred             HHcCCCCCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 048269          341 IKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAG---KSLDAAKYVERVMNRGVEVPRFDYNKFLHYY  417 (465)
Q Consensus       341 ~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~  417 (465)
                      .+.|.   ...+                       ..+...|...|   ++++|+++|++..+.|   +...+..|...|
T Consensus       323 ~~~~~---~~a~-----------------------~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y  373 (490)
T 2xm6_A          323 AEQGD---ATAQ-----------------------ANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNAL  373 (490)
T ss_dssp             HHTTC---HHHH-----------------------HHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred             HhcCC---HHHH-----------------------HHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence            87652   2222                       22334445545   8899999999999863   567888888888


Q ss_pred             hh----ccchHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 048269          418 SN----EEGVVMFEEVGKKLREVGLADLADIFQRYGKKM  452 (465)
Q Consensus       418 ~~----~g~~~~a~~~~~~~~~~g~~~~~~~~~~~~~~~  452 (465)
                      ..    .++.++|...+++..+.|.   ...+..+|.+.
T Consensus       374 ~~g~g~~~~~~~A~~~~~~A~~~~~---~~a~~~Lg~~y  409 (490)
T 2xm6_A          374 LQGKGVKKDEQQAAIWMRKAAEQGL---SAAQVQLGEIY  409 (490)
T ss_dssp             HHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHH
T ss_pred             HcCCCCCCCHHHHHHHHHHHHhCCC---HHHHHHHHHHH
Confidence            88    7999999999999999873   44555555544

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.78  E-value=2.6e-19  Score=175.62  Aligned_cols=113  Identities=11%  Similarity=0.100  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHhh----cCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHH
Q 048269          144 EMLNKVVKTLCQRKLVVEAKYLILKLS----EWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMI  219 (465)
Q Consensus       144 ~~~~~ll~~~~~~~~~~~a~~~~~~m~----~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li  219 (465)
                      .+||++|++|++.|++++|.++|++|.    .|..||+.|||+||++||+.|++++|.++|++|.+.|+.||..||+++|
T Consensus       128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI  207 (1134)
T 3spa_A          128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL  207 (1134)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence            345555555555555555555554432    2445555555555555555555555555555555555555555555555


Q ss_pred             HHHHhcCC-HHHHHHHHHHHHHcCCCCCCcchHHHHHHH
Q 048269          220 ETFFKINK-DDEAMKVFQMMRVKRMDDLGLSTYRIVIDW  257 (465)
Q Consensus       220 ~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~~~~~li~~  257 (465)
                      .++++.|+ .++|.++|++|...|+.| |..+|+.++.+
T Consensus       208 ~glcK~G~~~e~A~~Ll~EM~~kG~~P-D~vtY~~ll~~  245 (1134)
T 3spa_A          208 QCMGRQDQDAGTIERCLEQMSQEGLKL-QALFTAVLLSE  245 (1134)
T ss_dssp             HHHHHHTCCHHHHHHHHHHHHHHTCCS-HHHHHHSCCCH
T ss_pred             HHHHhCCCcHHHHHHHHHHHHHcCCCC-ChhhcccccCh
Confidence            55555544 244455555555555555 55555544443

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.77  E-value=2.6e-19  Score=175.59  Aligned_cols=150  Identities=11%  Similarity=0.133  Sum_probs=126.4

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHhhh---CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh-cCCCCCHHhHHHH
Q 048269          108 DKTFKIALMTLAEVRELKKMVNFFHIMND---CGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLS-EWIKPNEIAYGWL  183 (465)
Q Consensus       108 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~-~~~~~~~~~~~~l  183 (465)
                      ..||+++|.+|++.|++++|.++|+.|.+   .|+.||..+||+||++|++.|++++|.++|++|. .|+.||.+||++|
T Consensus       127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL  206 (1134)
T 3spa_A          127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA  206 (1134)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence            35899999999999999999999988764   5899999999999999999999999999999999 9999999999999


Q ss_pred             HHHHHhcCC-HHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----CCcchHHHHHHH
Q 048269          184 IKGYCDVGD-LIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDD-----LGLSTYRIVIDW  257 (465)
Q Consensus       184 i~~~~~~g~-~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-----~~~~~~~~li~~  257 (465)
                      |.++++.|+ .++|.++|++|.+.|+.||..+|+.++..+.+.    .+++.++.+ ..+..|     +...+...|.+.
T Consensus       207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~dl  281 (1134)
T 3spa_A          207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRDV  281 (1134)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHHH
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHHH
Confidence            999999998 478999999999999999999999998766554    444444444 233333     125566667777


Q ss_pred             HHhcC
Q 048269          258 MCKRG  262 (465)
Q Consensus       258 ~~~~~  262 (465)
                      |.+.+
T Consensus       282 ~s~d~  286 (1134)
T 3spa_A          282 YAKDG  286 (1134)
T ss_dssp             HCCCS
T ss_pred             HccCC
Confidence            77655

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.77  E-value=9.7e-17  Score=145.57  Aligned_cols=256  Identities=8%  Similarity=-0.092  Sum_probs=216.2

Q ss_pred             CCCChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHH
Q 048269           49 FPLSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMV  128 (465)
Q Consensus        49 ~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  128 (465)
                      ..++++.|..+|+.++...+.   +...+..+...+.+.|++++|.+.++++.+.++.+..++..+...+...|++++|+
T Consensus        33 ~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~  109 (327)
T 3cv0_A           33 KLANLAEAALAFEAVCQAAPE---REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAAL  109 (327)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HhccHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHH
Confidence            345889999999998666654   88999999999999999999999999999988878889999999999999999999


Q ss_pred             HHHHHhhhCCCCCCHHHHHHH--------------HH-HHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCH
Q 048269          129 NFFHIMNDCGCEYSLEMLNKV--------------VK-TLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDL  193 (465)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~l--------------l~-~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~  193 (465)
                      +.++.+.+.. +.+...+..+              .. .+...|++++|...++++....+.+..++..+...+...|++
T Consensus       110 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~  188 (327)
T 3cv0_A          110 ASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNY  188 (327)
T ss_dssp             HHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccH
Confidence            9999998864 2233333333              22 377789999999999998844566889999999999999999


Q ss_pred             HHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 048269          194 IEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEE  273 (465)
Q Consensus       194 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~  273 (465)
                      ++|...++.+.+.. +.+..++..+...+...|++++|.+.++++.+.  .|.+..++..+..+|...|++++|...+++
T Consensus       189 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  265 (327)
T 3cv0_A          189 DSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDI--NPGYVRVMYNMAVSYSNMSQYDLAAKQLVR  265 (327)
T ss_dssp             HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            99999999998864 346788999999999999999999999999876  454778899999999999999999999999


Q ss_pred             HHHCCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHHhcC
Q 048269          274 MFKRGIEA-----------DNLTLSSIIYGLLARGRLREAYKVVEEIEK  311 (465)
Q Consensus       274 m~~~~~~~-----------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~  311 (465)
                      +.+.....           +...+..+..++.+.|+.++|..++++...
T Consensus       266 a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~  314 (327)
T 3cv0_A          266 AIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE  314 (327)
T ss_dssp             HHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred             HHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            88753321           467888999999999999999999876543

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.77  E-value=1.5e-17  Score=151.39  Aligned_cols=293  Identities=10%  Similarity=0.063  Sum_probs=136.1

Q ss_pred             HHHHHhcCCCChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhc
Q 048269           42 FLQICNNFPLSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEV  121 (465)
Q Consensus        42 ~~~~l~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~  121 (465)
                      +..+|..+ .+.+.|.++++..        +++.+|..+..++.+.|++++|++.|.+.     ++..+|..++.++...
T Consensus         9 ~~~ll~~~-~~ld~A~~fae~~--------~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~   74 (449)
T 1b89_A            9 VQVLIEHI-GNLDRAYEFAERC--------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTS   74 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHc-cCHHHHHHHHHhC--------CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhC
Confidence            34445333 3578899998884        34569999999999999999999999653     3566899999999999


Q ss_pred             CCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 048269          122 RELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWN  201 (465)
Q Consensus       122 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~  201 (465)
                      |++++|+.+++...+.  .+++.+.+.++.+|.+.|+++++.++++      .|+..+|..+...|...|.+++|...|.
T Consensus        75 g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~  146 (449)
T 1b89_A           75 GNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN------GPNNAHIQQVGDRCYDEKMYDAAKLLYN  146 (449)
T ss_dssp             ------------------------------------CHHHHTTTTT------CC----------------CTTTHHHHHH
T ss_pred             CCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc------CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            9999999988777664  5667888999999999999999888775      4777899999999999999999999999


Q ss_pred             HHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 048269          202 LMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEA  281 (465)
Q Consensus       202 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~  281 (465)
                      .+         ..|..++.++.+.|++++|.+.+..+      . ++.+|..++.+|...|+++.|......     +..
T Consensus       147 ~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~-~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~  205 (449)
T 1b89_A          147 NV---------SNFGRLASTLVHLGEYQAAVDGARKA------N-STRTWKEVCFACVDGKEFRLAQMCGLH-----IVV  205 (449)
T ss_dssp             HT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------T-CHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTT
T ss_pred             Hh---------hhHHHHHHHHHHhccHHHHHHHHHHc------C-CchhHHHHHHHHHHcCcHHHHHHHHHH-----HHh
Confidence            76         36899999999999999999999987      2 778999999999999999999655443     223


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHhcC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 048269          282 DNLTLSSIIYGLLARGRLREAYKVVEEIEK---PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQG  358 (465)
Q Consensus       282 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~  358 (465)
                      .+.-...++..|.+.|++++|..+++....   .....|+-+.-.|++- ++++..+.++....   +.+   ..-++++
T Consensus       206 ~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~---~in---i~k~~~~  278 (449)
T 1b89_A          206 HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHLELFWS---RVN---IPKVLRA  278 (449)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT-CHHHHHHHHHHHST---TSC---HHHHHHH
T ss_pred             CHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHH---Hhc---CcHHHHH
Confidence            444466788999999999999999999887   4566677777777765 34444444433321   112   2346666


Q ss_pred             hhcccCCCCCCCchHHHHHHHHHHHhcCCHHHHHHH
Q 048269          359 HLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKY  394 (465)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~  394 (465)
                      |          -+...|..++..|...++++.|...
T Consensus       279 ~----------~~~~~w~e~~~ly~~~~e~d~A~~t  304 (449)
T 1b89_A          279 A----------EQAHLWAELVFLYDKYEEYDNAIIT  304 (449)
T ss_dssp             H----------HTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred             H----------HHHHHHHHHHHHHHhhchHHHHHHH
Confidence            6          3567899999999999999999875

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.76  E-value=2.5e-14  Score=138.91  Aligned_cols=354  Identities=12%  Similarity=0.064  Sum_probs=214.0

Q ss_pred             CChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHH-HhcCCHHHHHH
Q 048269           51 LSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTL-AEVRELKKMVN  129 (465)
Q Consensus        51 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~  129 (465)
                      ++.+.|..+|+.++...|.   +...|..++..+.+.|++++|..+|+++....+ +...|...+... ...|+.+.|.+
T Consensus        26 ~~~~~a~~~~e~al~~~P~---~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~~lw~~~~~~~~~~~~~~~~a~~  101 (530)
T 2ooe_A           26 QPIDKARKTYERLVAQFPS---SGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HIDLWKCYLSYVRETKGKLPSYKE  101 (530)
T ss_dssp             SCHHHHHHHHHHHHTTCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CHHHHHHHHHHHHHHTTTSTTHHH
T ss_pred             CCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHccchhhHHH
Confidence            4677888888887544443   777888888888888888888888888877654 555666665433 34466655544


Q ss_pred             ----HHHHhhh-CCCC-CCHHHHHHHHHHHHc---------CCCHHHHHHHHHHhhcCCCCC--HHhHHHHHHHHH----
Q 048269          130 ----FFHIMND-CGCE-YSLEMLNKVVKTLCQ---------RKLVVEAKYLILKLSEWIKPN--EIAYGWLIKGYC----  188 (465)
Q Consensus       130 ----~~~~~~~-~~~~-~~~~~~~~ll~~~~~---------~~~~~~a~~~~~~m~~~~~~~--~~~~~~li~~~~----  188 (465)
                          +|+.... .|.. ++...|...+....+         .|+++.|..+|++... .+.+  ...|........    
T Consensus       102 ~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~~~~~~~~~~~~~e~~~~~  180 (530)
T 2ooe_A          102 KMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMINIEQLWRDYNKYEEGINI  180 (530)
T ss_dssp             HHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCTTHHHHHHHHHHHHHHHCH
T ss_pred             HHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chhhhHHHHHHHHHHHHHhhch
Confidence                6665544 2433 345666666665544         5778888888888774 2211  223333222111    


Q ss_pred             ---------hcCCHHHHHHHHHHHH------HCC---CCCc--------HHHHHHHHHHHHhc----CCH----HHHHHH
Q 048269          189 ---------DVGDLIEASKIWNLMT------DEG---FEPS--------IDVVDKMIETFFKI----NKD----DEAMKV  234 (465)
Q Consensus       189 ---------~~g~~~~a~~~~~~m~------~~g---~~~~--------~~~~~~li~~~~~~----g~~----~~A~~~  234 (465)
                               +.+++..|..++..+.      +..   ++|+        ...|...+......    ++.    +.|..+
T Consensus       181 ~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~  260 (530)
T 2ooe_A          181 HLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFA  260 (530)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHH
T ss_pred             hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHH
Confidence                     1234555666555522      111   2333        23455544333221    222    366677


Q ss_pred             HHHHHHcCCCCCCcchHHHHHHHHHh-------cCChH-------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 048269          235 FQMMRVKRMDDLGLSTYRIVIDWMCK-------RGKIS-------QAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLR  300 (465)
Q Consensus       235 ~~~m~~~~~~~~~~~~~~~li~~~~~-------~~~~~-------~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~  300 (465)
                      |++....  .|.+...|...+..+.+       .|+++       +|..+|++..+.-.+-+...+..++..+.+.|+++
T Consensus       261 y~~al~~--~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~  338 (530)
T 2ooe_A          261 YEQCLLV--LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYE  338 (530)
T ss_dssp             HHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHh--CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHH
Confidence            7777765  44466777777777765       67776       78888888775222335677777788888888888


Q ss_pred             HHHHHHHHhcC--CC-H-hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhhcccCCCCCCCchHHH
Q 048269          301 EAYKVVEEIEK--PD-I-SLYHGLIKGLLRLRRAREATQVFREMIKRGCEPT-MHTYIMLLQGHLGKRGRKGPDPLVNFD  375 (465)
Q Consensus       301 ~a~~~~~~~~~--~~-~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~~~~~~~~~  375 (465)
                      +|..+|+++.+  |+ . ..|..++..+.+.|++++|.++|++..+.  .|+ ...+....                   
T Consensus       339 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a-------------------  397 (530)
T 2ooe_A          339 KVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAA-------------------  397 (530)
T ss_dssp             HHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHH-------------------
T ss_pred             HHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHH-------------------
Confidence            88888887776  33 2 46777777777788888888888888754  332 11111111                   


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHhhccchHHHHHHHHHHHHcC
Q 048269          376 TIFVGGLVKAGKSLDAAKYVERVMNRGVEV-PRFDYNKFLHYYSNEEGVVMFEEVGKKLREVG  437 (465)
Q Consensus       376 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g  437 (465)
                        ++ .+...|++++|..+|++..+.  .| +...|..++..+.+.|+.++|..++++..+.+
T Consensus       398 --~~-~~~~~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~  455 (530)
T 2ooe_A          398 --LM-EYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG  455 (530)
T ss_dssp             --HH-HHHHTCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred             --HH-HHHHcCChhHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence              11 122466677777777766653  24 34566666666666677777777777766653

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.75  E-value=9.2e-15  Score=139.88  Aligned_cols=343  Identities=11%  Similarity=-0.064  Sum_probs=230.6

Q ss_pred             CCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhC---------CCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----
Q 048269           71 AHNSITFNRMVDIIGKSRNIDLFWETLQEMGRR---------RLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDC----  137 (465)
Q Consensus        71 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----  137 (465)
                      ......||.+..++...|++++|++.|++..+.         .+....+|+.+...|...|++++|+..+++..+.    
T Consensus        48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~  127 (472)
T 4g1t_A           48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF  127 (472)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred             hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence            345678999999999999999999999887542         2234568899999999999999999999887652    


Q ss_pred             -C--CCCCHHHHHHHHHHHHc--CCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHH---HhcCCHHHHHHHHHHHHHCCCC
Q 048269          138 -G--CEYSLEMLNKVVKTLCQ--RKLVVEAKYLILKLSEWIKPNEIAYGWLIKGY---CDVGDLIEASKIWNLMTDEGFE  209 (465)
Q Consensus       138 -~--~~~~~~~~~~ll~~~~~--~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~---~~~g~~~~a~~~~~~m~~~g~~  209 (465)
                       +  ......++.....++..  .+++++|+..|++.....|.++..+..+..++   ...++.++|++.+++..+.. +
T Consensus       128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p  206 (472)
T 4g1t_A          128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-P  206 (472)
T ss_dssp             CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-S
T ss_pred             ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-C
Confidence             1  11234566655555544  45799999999998743355666666655553   45577788999998887753 2


Q ss_pred             CcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 048269          210 PSIDVVDKMIETFFK----INKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLT  285 (465)
Q Consensus       210 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~  285 (465)
                      .+..++..+...+..    .|++++|.+.+++....  .|.+..++..+...|...|++++|...+++..+... -+..+
T Consensus       207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~  283 (472)
T 4g1t_A          207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK--APGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIP-NNAYL  283 (472)
T ss_dssp             SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHH
T ss_pred             cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh--CccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC-ChHHH
Confidence            355666666555544    46788999999988766  454778899999999999999999999999887643 25666


Q ss_pred             HHHHHHHHHhc-------------------CCHHHHHHHHHHhcC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048269          286 LSSIIYGLLAR-------------------GRLREAYKVVEEIEK---PDISLYHGLIKGLLRLRRAREATQVFREMIKR  343 (465)
Q Consensus       286 ~~~li~~~~~~-------------------~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  343 (465)
                      +..+..+|...                   +..+.|...++....   .+...+..+...|...|++++|.+.|++.++.
T Consensus       284 ~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~  363 (472)
T 4g1t_A          284 HCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSK  363 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc
Confidence            66666555322                   235667777776655   55667888999999999999999999999865


Q ss_pred             CCCCCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---------------------
Q 048269          344 GCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRG---------------------  402 (465)
Q Consensus       344 ~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---------------------  402 (465)
                      .  |+......+...+                  -.-.+...|++++|+..|++..+..                     
T Consensus       364 ~--~~~~~~~~~~~~~------------------~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l  423 (472)
T 4g1t_A          364 E--LTPVAKQLLHLRY------------------GNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRL  423 (472)
T ss_dssp             C--CCHHHHHHHHHHH------------------HHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             C--CCChHHHHHHHHH------------------HHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHH
Confidence            4  4333221111111                  0012346788888888887776521                     


Q ss_pred             -CCC-CHhhHHHHHHHHhhccchHHHHHHHHHHHHcC
Q 048269          403 -VEV-PRFDYNKFLHYYSNEEGVVMFEEVGKKLREVG  437 (465)
Q Consensus       403 -~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g  437 (465)
                       ..| +..+|..+...+...|++++|.+.+++.++.|
T Consensus       424 ~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~  460 (472)
T 4g1t_A          424 SKNGADSEALHVLAFLQELNEKMQQADEDSERGLESG  460 (472)
T ss_dssp             HHCC-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence             123 45588889999999999999999999999886

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.75  E-value=7.3e-16  Score=137.02  Aligned_cols=253  Identities=13%  Similarity=0.048  Sum_probs=192.6

Q ss_pred             HHHHHhcCChhHHHHHHHHHhhCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCH
Q 048269           81 VDIIGKSRNIDLFWETLQEMGRRRLVN-DKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLV  159 (465)
Q Consensus        81 ~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~  159 (465)
                      ++.....|++..|+..++.....++.+ ......+.++|...|+++.|+..++.   . -+|+..++..+...+...++.
T Consensus         6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~   81 (291)
T 3mkr_A            6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRR   81 (291)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTH
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcH
Confidence            445567788999988887765544422 34556678889999999888876644   2 366777888888888888999


Q ss_pred             HHHHHHHHHhh-cC-CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048269          160 VEAKYLILKLS-EW-IKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQM  237 (465)
Q Consensus       160 ~~a~~~~~~m~-~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  237 (465)
                      ++|++.++++. .+ .+.+...+..+...+...|++++|++.++.      +.+...+..++..+.+.|++++|.+.|+.
T Consensus        82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~  155 (291)
T 3mkr_A           82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK  155 (291)
T ss_dssp             HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            99999999887 44 344666777777888899999999998887      45778888888999999999999999999


Q ss_pred             HHHcCCCCCCcchHHH----HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC--
Q 048269          238 MRVKRMDDLGLSTYRI----VIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK--  311 (465)
Q Consensus       238 m~~~~~~~~~~~~~~~----li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--  311 (465)
                      +.+.  .| +. +...    .+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|...|+++..  
T Consensus       156 ~~~~--~p-~~-~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~  230 (291)
T 3mkr_A          156 MQDQ--DE-DA-TLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD  230 (291)
T ss_dssp             HHHH--CT-TC-HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHhh--Cc-Cc-HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            8876  34 32 2222    223344558899999999998877 345788888888899999999999999998776  


Q ss_pred             -CCHhhHHHHHHHHHhcCCHHH-HHHHHHHHHHcCCCCCHH
Q 048269          312 -PDISLYHGLIKGLLRLRRARE-ATQVFREMIKRGCEPTMH  350 (465)
Q Consensus       312 -~~~~~~~~li~~~~~~~~~~~-a~~~~~~m~~~~~~p~~~  350 (465)
                       .+..++..++..+...|+.++ +.++++++.+.  .|+..
T Consensus       231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~~~  269 (291)
T 3mkr_A          231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA--HRSHP  269 (291)
T ss_dssp             TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCH
T ss_pred             CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCCCh
Confidence             567788888888888888865 56888888754  45543

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.75  E-value=1.2e-15  Score=135.60  Aligned_cols=270  Identities=12%  Similarity=0.089  Sum_probs=201.7

Q ss_pred             HHHHHhcCCHHHHHHHHHHhhhCCCCCCH--HHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCC
Q 048269          115 LMTLAEVRELKKMVNFFHIMNDCGCEYSL--EMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGD  192 (465)
Q Consensus       115 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~  192 (465)
                      ++.....|++..|+..++.....  .|+.  .....+.++|...|+++.|+..++.   ..+|+..++..+...+...|+
T Consensus         6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~   80 (291)
T 3mkr_A            6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSR   80 (291)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTT
T ss_pred             HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCc
Confidence            34556679999999998877654  3443  4556678899999999999876644   246778888999999999999


Q ss_pred             HHHHHHHHHHHHHCCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHH
Q 048269          193 LIEASKIWNLMTDEGFEP-SIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTML  271 (465)
Q Consensus       193 ~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~  271 (465)
                      .++|++.++++...+..| +...+..+...+...|++++|++.++.       |.+...+..++..+.+.|++++|.+.+
T Consensus        81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~l  153 (291)
T 3mkr_A           81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------GDSLECMAMTVQILLKLDRLDLARKEL  153 (291)
T ss_dssp             HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            999999999998876545 566677778899999999999999986       337888999999999999999999999


Q ss_pred             HHHHHCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHhcC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 048269          272 EEMFKRGIEADNLTL---SSIIYGLLARGRLREAYKVVEEIEK---PDISLYHGLIKGLLRLRRAREATQVFREMIKRGC  345 (465)
Q Consensus       272 ~~m~~~~~~~~~~~~---~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~  345 (465)
                      +++.+..  |+....   ...+..+...|++++|..+|+++.+   .+...++.+..++.+.|++++|...|++.++.  
T Consensus       154 ~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~--  229 (291)
T 3mkr_A          154 KKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK--  229 (291)
T ss_dssp             HHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred             HHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence            9998774  443211   2233444556889999999998877   56778888899999999999999999998865  


Q ss_pred             CCC-HHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcCCHHH-HHHHHHHHHhCCCCCCHhhHHHHHHHHhhccch
Q 048269          346 EPT-MHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLD-AAKYVERVMNRGVEVPRFDYNKFLHYYSNEEGV  423 (465)
Q Consensus       346 ~p~-~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~  423 (465)
                      .|+ ..++                       ..++..+...|+.++ +.++++++.+  +.|+....   .....+.+.+
T Consensus       230 ~p~~~~~l-----------------------~~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~~~~~---~d~~~~~~~f  281 (291)
T 3mkr_A          230 DSGHPETL-----------------------INLVVLSQHLGKPPEVTNRYLSQLKD--AHRSHPFI---KEYRAKENDF  281 (291)
T ss_dssp             CTTCHHHH-----------------------HHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCHHH---HHHHHHHHHH
T ss_pred             CCCCHHHH-----------------------HHHHHHHHHcCCCHHHHHHHHHHHHH--hCCCChHH---HHHHHHHHHH
Confidence            343 3333                       334444577888865 5688888887  45665432   2334555555


Q ss_pred             HHHHH
Q 048269          424 VMFEE  428 (465)
Q Consensus       424 ~~a~~  428 (465)
                      +++..
T Consensus       282 d~~~~  286 (291)
T 3mkr_A          282 DRLVL  286 (291)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55443

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.74  E-value=1.1e-16  Score=145.80  Aligned_cols=248  Identities=13%  Similarity=0.075  Sum_probs=139.7

Q ss_pred             ChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 048269           52 SWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFF  131 (465)
Q Consensus        52 ~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  131 (465)
                      +.+.|.+.|..+        +|...|..++.++...|++++|+..++...+ ..+++.+.+.++.+|.+.|+++++.+++
T Consensus        47 ~~~eAIdsfika--------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark-~~~~~~i~~~Li~~Y~Klg~l~e~e~f~  117 (449)
T 1b89_A           47 MVKEAIDSYIKA--------DDPSSYMEVVQAANTSGNWEELVKYLQMARK-KARESYVETELIFALAKTNRLAELEEFI  117 (449)
T ss_dssp             -----------------------------------------------------------------------CHHHHTTTT
T ss_pred             CHHHHHHHHHcC--------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-hCccchhHHHHHHHHHHhCCHHHHHHHH
Confidence            678899998764        4888999999999999999999997776655 4556778999999999999999998887


Q ss_pred             HHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCc
Q 048269          132 HIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPS  211 (465)
Q Consensus       132 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~  211 (465)
                      +       .|+..+|+.+...|...|.+++|..+|..+        ..|..|+.++.+.|++++|.+.+.++      .+
T Consensus       118 ~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~  176 (449)
T 1b89_A          118 N-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA------NS  176 (449)
T ss_dssp             T-------CC----------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH------TC
T ss_pred             c-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc------CC
Confidence            4       377789999999999999999999999988        37999999999999999999999998      27


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048269          212 IDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIY  291 (465)
Q Consensus       212 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~  291 (465)
                      +.+|..++.+|+..|+++.|......+     .. .+.-...++..|.+.|.+++|..+++...... +-....|+.+.-
T Consensus       177 ~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~-~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~i  249 (449)
T 1b89_A          177 TRTWKEVCFACVDGKEFRLAQMCGLHI-----VV-HADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAI  249 (449)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHTTTTT-----TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHH
T ss_pred             chhHHHHHHHHHHcCcHHHHHHHHHHH-----Hh-CHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHH
Confidence            899999999999999999997666542     22 44446678999999999999999999988664 446777887777


Q ss_pred             HHHhc--CCHHHHHHHHHHhcC--------CCHhhHHHHHHHHHhcCCHHHHHHH
Q 048269          292 GLLAR--GRLREAYKVVEEIEK--------PDISLYHGLIKGLLRLRRAREATQV  336 (465)
Q Consensus       292 ~~~~~--~~~~~a~~~~~~~~~--------~~~~~~~~li~~~~~~~~~~~a~~~  336 (465)
                      +|++-  +++.+..+.|..-..        -+...|..+...|.+.++++.|...
T Consensus       250 l~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t  304 (449)
T 1b89_A          250 LYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT  304 (449)
T ss_dssp             HHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence            77754  556666666654443        3577899999999999999998874

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.74  E-value=1.1e-13  Score=134.52  Aligned_cols=401  Identities=10%  Similarity=0.028  Sum_probs=272.6

Q ss_pred             CCCChhHHHHHHHHHhhcCCCCchh----HHhhhhhCCCCCCHHHHHHHHhcCCCChhHHHHHHHHHhhcCCCCCCCHHh
Q 048269            1 APVDPGHLVRVCTILYQQQYSPESR----LHSSLSSCNFNLTHEFFLQICNNFPLSWRPVYLFFQYTQKAQPCFAHNSIT   76 (465)
Q Consensus         1 ~p~~~~~~~~~~~~l~~~~~~~~~~----~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~   76 (465)
                      .|.+.+.-..+... .+.+  ....    ++..+...|..........-+..-.++.+.|..+|+.++...    |+...
T Consensus         9 ~P~~~~~w~~l~~~-~~~~--~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~----p~~~l   81 (530)
T 2ooe_A            9 NPYDLDAWSILIRE-AQNQ--PIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV----LHIDL   81 (530)
T ss_dssp             CTTCHHHHHHHHHH-HHSS--CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC----CCHHH
T ss_pred             CCCCHHHHHHHHHH-HHhC--CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CChHH
Confidence            47777777777775 3333  2222    444555554443322222222222358899999999984332    57788


Q ss_pred             HHHHHHHH-HhcCChhHHHH----HHHHHhhC-C--CCChHHHHHHHHHHHh---------cCCHHHHHHHHHHhhhCCC
Q 048269           77 FNRMVDII-GKSRNIDLFWE----TLQEMGRR-R--LVNDKTFKIALMTLAE---------VRELKKMVNFFHIMNDCGC  139 (465)
Q Consensus        77 ~~~l~~~~-~~~g~~~~a~~----~~~~~~~~-~--~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~  139 (465)
                      |...+... ...|+.+.|.+    +|+..... |  +.+...|...+....+         .|+++.|..+|++..+...
T Consensus        82 w~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~  161 (530)
T 2ooe_A           82 WKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPM  161 (530)
T ss_dssp             HHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCC
T ss_pred             HHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchh
Confidence            88888644 45688877665    77766542 3  3466788888776655         7899999999999988321


Q ss_pred             CCCHHHHHHHHHHH-------------HcCCCHHHHHHHHHHhh------c----CCCCC--------HHhHHHHHHHHH
Q 048269          140 EYSLEMLNKVVKTL-------------CQRKLVVEAKYLILKLS------E----WIKPN--------EIAYGWLIKGYC  188 (465)
Q Consensus       140 ~~~~~~~~~ll~~~-------------~~~~~~~~a~~~~~~m~------~----~~~~~--------~~~~~~li~~~~  188 (465)
                      ......|.......             ...+++..|..++.++.      .    .++|+        ...|...+....
T Consensus       162 ~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~  241 (530)
T 2ooe_A          162 INIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEK  241 (530)
T ss_dssp             TTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHH
Confidence            11123443322211             13456777877777631      1    13444        245555554333


Q ss_pred             hc----CCH----HHHHHHHHHHHHCCCCCcHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHcCCCCC
Q 048269          189 DV----GDL----IEASKIWNLMTDEGFEPSIDVVDKMIETFFK-------INKDD-------EAMKVFQMMRVKRMDDL  246 (465)
Q Consensus       189 ~~----g~~----~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~m~~~~~~~~  246 (465)
                      ..    ++.    +.+..+|++..... +-+...|..++..+.+       .|+++       +|.++|+..... +.|.
T Consensus       242 ~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~-~~p~  319 (530)
T 2ooe_A          242 SNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKK  319 (530)
T ss_dssp             HCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT-TCSS
T ss_pred             cCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH-hCcc
Confidence            22    232    47788899888752 3468888888888876       68987       899999998752 3565


Q ss_pred             CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-H-HHHHHHHHHHHhcCCHHHHHHHHHHhcC--CC-HhhHHHHH
Q 048269          247 GLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEAD-N-LTLSSIIYGLLARGRLREAYKVVEEIEK--PD-ISLYHGLI  321 (465)
Q Consensus       247 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~-~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~li  321 (465)
                      +...|..++..+.+.|++++|..+|+++.+.  .|+ . ..|..++..+.+.|++++|..+|++..+  |+ ...|....
T Consensus       320 ~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a  397 (530)
T 2ooe_A          320 NMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAA  397 (530)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHH
T ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHH
Confidence            7889999999999999999999999999986  443 3 5788888889999999999999999987  22 22222222


Q ss_pred             H-HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048269          322 K-GLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMN  400 (465)
Q Consensus       322 ~-~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  400 (465)
                      . .+...|+.++|..+|++.++.  .|+.                      +..|..++..+.+.|+.++|..+|++...
T Consensus       398 ~~~~~~~~~~~~A~~~~e~al~~--~p~~----------------------~~~~~~~~~~~~~~g~~~~Ar~~~~~al~  453 (530)
T 2ooe_A          398 LMEYYCSKDKSVAFKIFELGLKK--YGDI----------------------PEYVLAYIDYLSHLNEDNNTRVLFERVLT  453 (530)
T ss_dssp             HHHHHHTCCHHHHHHHHHHHHHH--HTTC----------------------HHHHHHHHHHHTTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCChhHHHHHHHHHHHH--CCCC----------------------HHHHHHHHHHHHhCCCHhhHHHHHHHHHh
Confidence            2 233689999999999998865  3432                      22344455556889999999999999998


Q ss_pred             CC-CCCC--HhhHHHHHHHHhhccchHHHHHHHHHHHHc
Q 048269          401 RG-VEVP--RFDYNKFLHYYSNEEGVVMFEEVGKKLREV  436 (465)
Q Consensus       401 ~~-~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  436 (465)
                      .+ ..|+  ...|...+......|+.+.+..+.+++.+.
T Consensus       454 ~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~  492 (530)
T 2ooe_A          454 SGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA  492 (530)
T ss_dssp             SCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            53 2332  337888888888899999999999998876

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.72  E-value=6.7e-14  Score=142.05  Aligned_cols=349  Identities=10%  Similarity=0.014  Sum_probs=259.1

Q ss_pred             CCCCCHHHHHHHHhcCC--CChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHH
Q 048269           34 NFNLTHEFFLQICNNFP--LSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTF  111 (465)
Q Consensus        34 ~~~~~~~~~~~~l~~~~--~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~  111 (465)
                      +...+|+.+....+.+.  ..+..|+++++.++.....|.-+...-+.++.+..+. +..+..+..+......      .
T Consensus       980 ~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d------~ 1052 (1630)
T 1xi4_A          980 SETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD------A 1052 (1630)
T ss_pred             ccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc------H
Confidence            44556666655555443  3788888998888433333555677777777777777 5566666666654221      3


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcC
Q 048269          112 KIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVG  191 (465)
Q Consensus       112 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g  191 (465)
                      ..+...+...|.+++|..+|++..     -.....+.++.   ..+++++|.++.++..     +..+|..+..++...|
T Consensus      1053 ~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn-----~p~vWsqLAKAql~~G 1119 (1630)
T 1xi4_A         1053 PDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCN-----EPAVWSQLAKAQLQKG 1119 (1630)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcC-----CHHHHHHHHHHHHhCC
Confidence            447788888999999999998853     12222233332   6788999999998774     5778999999999999


Q ss_pred             CHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHH
Q 048269          192 DLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTML  271 (465)
Q Consensus       192 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~  271 (465)
                      ++++|++.|.+.      -|...|..++.+|.+.|++++|.+.+....+..  + ++...+.++.+|++.++++....+.
T Consensus      1120 ~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~-e~~Idt~LafaYAKl~rleele~fI 1190 (1630)
T 1xi4_A         1120 MVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--R-ESYVETELIFALAKTNRLAELEEFI 1190 (1630)
T ss_pred             CHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--c-cccccHHHHHHHHhhcCHHHHHHHH
Confidence            999999999664      478888999999999999999999999877654  3 4445556999999999988644443


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 048269          272 EEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEKPDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHT  351 (465)
Q Consensus       272 ~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~  351 (465)
                          .   .++...+..+...|...|++++|..+|..+     ..|..+..+|.+.|++++|.+.+++.      .+..+
T Consensus      1191 ----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~a 1252 (1630)
T 1xi4_A         1191 ----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRT 1252 (1630)
T ss_pred             ----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHH
Confidence                2   345667778999999999999999999985     58999999999999999999999987      34577


Q ss_pred             HHHHHHHhhcccC-------CCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHhhc--c
Q 048269          352 YIMLLQGHLGKRG-------RKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVP-RFDYNKFLHYYSNE--E  421 (465)
Q Consensus       352 ~~~ll~~~~~~~~-------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~--g  421 (465)
                      |..+-.+|...+.       ..++..++..+..++..|.+.|.+++|+.+++....  +.+. ...|+-|...+.+.  +
T Consensus      1253 Wkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~--LeraH~gmftELaiLyaKy~pe 1330 (1630)
T 1xi4_A         1253 WKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALG--LERAHMGMFTELAILYSKFKPQ 1330 (1630)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cChhHhHHHHHHHHHHHhCCHH
Confidence            7666666644444       234566788889999999999999999999988874  4443 33676666666553  4


Q ss_pred             chHHHHHHHH
Q 048269          422 GVVMFEEVGK  431 (465)
Q Consensus       422 ~~~~a~~~~~  431 (465)
                      +..++.+++.
T Consensus      1331 klmEhlk~f~ 1340 (1630)
T 1xi4_A         1331 KMREHLELFW 1340 (1630)
T ss_pred             HHHHHHHHHH
Confidence            5555555544

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.72  E-value=8.6e-16  Score=130.49  Aligned_cols=200  Identities=8%  Similarity=-0.068  Sum_probs=151.0

Q ss_pred             CCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 048269           71 AHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVV  150 (465)
Q Consensus        71 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll  150 (465)
                      ++++..+..+...+.+.|++++|...|++..+.++.+..++..+...+.+.|++++|+..|++..+.. +.+...+..+.
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg   80 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS   80 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence            45777888888999999999999999999998888888889999999999999999999999988865 55677888888


Q ss_pred             HHHHcC-----------CCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHH
Q 048269          151 KTLCQR-----------KLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMI  219 (465)
Q Consensus       151 ~~~~~~-----------~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li  219 (465)
                      .++...           |++++|+..|++.....+.+...+..+...+...|++++|+..|++..+..  .+...+..+.
T Consensus        81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la  158 (217)
T 2pl2_A           81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA  158 (217)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred             HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence            888888           888888888888774445667778888888888888888888888887776  5777788888


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 048269          220 ETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMF  275 (465)
Q Consensus       220 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  275 (465)
                      .++...|++++|.+.|+...+.  .|.+...+..+...+...|++++|...+++..
T Consensus       159 ~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  212 (217)
T 2pl2_A          159 ELYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAALEH  212 (217)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC---------------
T ss_pred             HHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence            8888888888888888887765  45467777778888888888888888777654

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.71  E-value=7.3e-15  Score=140.58  Aligned_cols=360  Identities=8%  Similarity=-0.086  Sum_probs=237.2

Q ss_pred             HHHhcCCCChhHHHHHHHHHhhc------CCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhC-----C---CCChH
Q 048269           44 QICNNFPLSWRPVYLFFQYTQKA------QPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRR-----R---LVNDK  109 (465)
Q Consensus        44 ~~l~~~~~~~~~a~~~f~~~~~~------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~---~~~~~  109 (465)
                      ..+....++.+.|+..|+.++..      ...-.....+|+.+..+|...|++++|...+++..+.     +   .....
T Consensus        58 g~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~  137 (472)
T 4g1t_A           58 AYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPE  137 (472)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHH
Confidence            34444556889999999887432      1112235788999999999999999999999887542     1   12456


Q ss_pred             HHHHHHHHHHhc--CCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH---HHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHH
Q 048269          110 TFKIALMTLAEV--RELKKMVNFFHIMNDCGCEYSLEMLNKVVKT---LCQRKLVVEAKYLILKLSEWIKPNEIAYGWLI  184 (465)
Q Consensus       110 ~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li  184 (465)
                      ++.....++...  +++++|++.|++..+.. +-+...+..+..+   +...++.++|++.+++...-.+.+..++..+.
T Consensus       138 ~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~  216 (472)
T 4g1t_A          138 LDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLA  216 (472)
T ss_dssp             HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHH
Confidence            777776666654  46999999999998864 4455566555544   44567888999999887743456677776666


Q ss_pred             HHHHh----cCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHh
Q 048269          185 KGYCD----VGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCK  260 (465)
Q Consensus       185 ~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~  260 (465)
                      ..+..    .|++++|.+.+++..... +.+..++..+...|...|++++|.+.+++..+.  .|.+..++..+..+|..
T Consensus       217 ~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~y~~  293 (472)
T 4g1t_A          217 LKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHCQIGCCYRA  293 (472)
T ss_dssp             HHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHHHHHHHHHH
Confidence            55554    467889999999988764 446788999999999999999999999999876  56467777777666543


Q ss_pred             c-------------------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC--CCHhh---
Q 048269          261 R-------------------GKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK--PDISL---  316 (465)
Q Consensus       261 ~-------------------~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~---  316 (465)
                      .                   +..+.|...+++..+... .+...+..+...|...|++++|...|++...  ++...   
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~  372 (472)
T 4g1t_A          294 KVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQL  372 (472)
T ss_dssp             HHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred             HHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHH
Confidence            2                   235677778877776532 3566788899999999999999999998865  33322   


Q ss_pred             -HHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccC--CCCCCCchHHHHHHHHHHHhcCCHHHHH
Q 048269          317 -YHGLIK-GLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRG--RKGPDPLVNFDTIFVGGLVKAGKSLDAA  392 (465)
Q Consensus       317 -~~~li~-~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~--~~~~~~~~~~~~~li~~~~~~g~~~~A~  392 (465)
                       +..+.. .+...|++++|+..|++.++.  .|+.......+........  ...-+.++.+|..+...|...|++++|+
T Consensus       373 ~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~  450 (472)
T 4g1t_A          373 LHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQAD  450 (472)
T ss_dssp             HHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC---
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence             222222 245679999999999998854  5654433333222211000  1112456788999999999999999999


Q ss_pred             HHHHHHHhCC-CCCCHhhH
Q 048269          393 KYVERVMNRG-VEVPRFDY  410 (465)
Q Consensus       393 ~~~~~m~~~~-~~p~~~~~  410 (465)
                      +.|++.++.| ..|+..+|
T Consensus       451 ~~y~kALe~~~~~p~a~~~  469 (472)
T 4g1t_A          451 EDSERGLESGSLIPSASSW  469 (472)
T ss_dssp             -------------------
T ss_pred             HHHHHHHhcCCCCCcHhhc
Confidence            9999999854 33444443

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.68  E-value=1.6e-14  Score=126.01  Aligned_cols=222  Identities=11%  Similarity=0.007  Sum_probs=109.8

Q ss_pred             HHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC--CCC----HHHHH
Q 048269           74 SITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGC--EYS----LEMLN  147 (465)
Q Consensus        74 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~  147 (465)
                      ...|..+...+...|++++|...|+++.+.+ .+..++..+..++...|++++|+..++...+...  .++    ..++.
T Consensus         5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~   83 (258)
T 3uq3_A            5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA   83 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence            3445555555555666666666665555554 4555555555555555555555555555544210  001    34444


Q ss_pred             HHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCC
Q 048269          148 KVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINK  227 (465)
Q Consensus       148 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~  227 (465)
                      .+..++...|++++|...|++..                                  +.  .|+.       ..+.+.|+
T Consensus        84 ~l~~~~~~~~~~~~A~~~~~~a~----------------------------------~~--~~~~-------~~~~~~~~  120 (258)
T 3uq3_A           84 RIGNAYHKLGDLKKTIEYYQKSL----------------------------------TE--HRTA-------DILTKLRN  120 (258)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHH----------------------------------HH--CCCH-------HHHHHHHH
T ss_pred             HHHHHHHHcccHHHHHHHHHHHH----------------------------------hc--Cchh-------HHHHHHhH
Confidence            45555555555555555555544                                  32  1221       12333344


Q ss_pred             HHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048269          228 DDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVE  307 (465)
Q Consensus       228 ~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~  307 (465)
                      +++|.+.++.+...  .|.+...+..+...+...|++++|...+++..+... .+...+..+...|...|++++|...++
T Consensus       121 ~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~  197 (258)
T 3uq3_A          121 AEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCN  197 (258)
T ss_dssp             HHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            44444444444433  222334444444455555555555555555444321 134444455555555555555555555


Q ss_pred             HhcC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048269          308 EIEK---PDISLYHGLIKGLLRLRRAREATQVFREMIK  342 (465)
Q Consensus       308 ~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  342 (465)
                      +..+   .+...|..+...+...|++++|...|++..+
T Consensus       198 ~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  235 (258)
T 3uq3_A          198 KAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART  235 (258)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            4443   2344455555556666666666666655553

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.67  E-value=2.3e-12  Score=131.13  Aligned_cols=270  Identities=11%  Similarity=0.007  Sum_probs=173.2

Q ss_pred             hcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 048269           86 KSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYL  165 (465)
Q Consensus        86 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~  165 (465)
                      ..|++++|.++.++.     .++.+|..+..++...|++++|++.|...      -|...|..++.+|.+.|++++|.++
T Consensus      1088 ~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIey 1156 (1630)
T 1xi4_A         1088 HIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKY 1156 (1630)
T ss_pred             HHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHH
Confidence            445555555555533     24556777777777777777777777442      3556666677777777777777777


Q ss_pred             HHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 048269          166 ILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDD  245 (465)
Q Consensus       166 ~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~  245 (465)
                      |....... +++...+.++.+|++.+++++...+.    +   .++...|..+...|...|++++|..+|...       
T Consensus      1157 L~mArk~~-~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA------- 1221 (1630)
T 1xi4_A         1157 LQMARKKA-RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------- 1221 (1630)
T ss_pred             HHHHHhhc-ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-------
Confidence            76655211 23223334666777776666433322    2   245555666777777777777777777653       


Q ss_pred             CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCHhhHHHHHHHHH
Q 048269          246 LGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEKPDISLYHGLIKGLL  325 (465)
Q Consensus       246 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~  325 (465)
                         ..|..+..+|.+.|+++.|.+.+++.      .+..+|..+..+|...|++..|...... ...+...+..++..|.
T Consensus      1222 ---~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv~~deLeeli~yYe 1291 (1630)
T 1xi4_A         1222 ---SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADELEELINYYQ 1291 (1630)
T ss_pred             ---hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hhcCHHHHHHHHHHHH
Confidence               26777777777777777777777665      2456677777777777777777766654 3345566778889999


Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHhhcccC------------CCCCCC------chHHHHHHHHHHHhcC
Q 048269          326 RLRRAREATQVFREMIKRGCEPTMH-TYIMLLQGHLGKRG------------RKGPDP------LVNFDTIFVGGLVKAG  386 (465)
Q Consensus       326 ~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~------------~~~~~~------~~~~~~~li~~~~~~g  386 (465)
                      +.|.+++|+.+++..+  |+.+... .|..+-..+++-..            +..+++      +...|..++..|.+.|
T Consensus      1292 ~~G~feEAI~LlE~aL--~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~ 1369 (1630)
T 1xi4_A         1292 DRGYFEELITMLEAAL--GLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYE 1369 (1630)
T ss_pred             HcCCHHHHHHHHHHHh--ccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcc
Confidence            9999999999998877  4444332 33333333333222            333333      5678999999999999


Q ss_pred             CHHHHHH
Q 048269          387 KSLDAAK  393 (465)
Q Consensus       387 ~~~~A~~  393 (465)
                      +++.|..
T Consensus      1370 e~dnA~~ 1376 (1630)
T 1xi4_A         1370 EYDNAII 1376 (1630)
T ss_pred             cHHHHHH
Confidence            9999984

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.67  E-value=1.7e-15  Score=133.76  Aligned_cols=245  Identities=11%  Similarity=-0.075  Sum_probs=140.8

Q ss_pred             cCChhHHHHHHHHHhhCCC----CChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHH
Q 048269           87 SRNIDLFWETLQEMGRRRL----VNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEA  162 (465)
Q Consensus        87 ~g~~~~a~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a  162 (465)
                      .|++++|+..|+++.+...    .+..++..+...+...|++++|+..|+.+.+.. +.+..++..+..++...|++++|
T Consensus        18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A   96 (275)
T 1xnf_A           18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA   96 (275)
T ss_dssp             CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence            3556666666666665432    123456666666666666666666666666543 34556666666666666666666


Q ss_pred             HHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048269          163 KYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKR  242 (465)
Q Consensus       163 ~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~  242 (465)
                      ...|++.....+.+..++..+...|...|++++|...|+.+.+.  .|+.......+..+...|++++|...++..... 
T Consensus        97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-  173 (275)
T 1xnf_A           97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK-  173 (275)
T ss_dssp             HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence            66666666333445566666666666777777777777666654  233333333444445566777777777665554 


Q ss_pred             CCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCHhhHHH
Q 048269          243 MDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEA---DNLTLSSIIYGLLARGRLREAYKVVEEIEKPDISLYHG  319 (465)
Q Consensus       243 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  319 (465)
                       .|.+...+ .++..+...++.++|...+.+........   +...+..+...|...|++++|...|+++...++..+..
T Consensus       174 -~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  251 (275)
T 1xnf_A          174 -SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE  251 (275)
T ss_dssp             -SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH
T ss_pred             -CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH
Confidence             22133333 35555666666666776666665432110   13556666667777777777777777776633333334


Q ss_pred             HHHHHHhcCCHHHHHHHH
Q 048269          320 LIKGLLRLRRAREATQVF  337 (465)
Q Consensus       320 li~~~~~~~~~~~a~~~~  337 (465)
                      ...++...|++++|++-+
T Consensus       252 ~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          252 HRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             HHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHHhhHHHH
Confidence            445555666666666554

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.67  E-value=5.3e-14  Score=122.43  Aligned_cols=200  Identities=10%  Similarity=-0.038  Sum_probs=164.9

Q ss_pred             HHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 048269           74 SITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTL  153 (465)
Q Consensus        74 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~  153 (465)
                      ...|..+...+...|++++|.+.|+++.+.++.+..++..+...+...|++++|++.|+.+.+.. +.+...+..+..++
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~  115 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL  115 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence            56778888889999999999999999888777777888888999999999999999999888764 45777888888888


Q ss_pred             HcCCCHHHHHHHHHHhhc--CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHH
Q 048269          154 CQRKLVVEAKYLILKLSE--WIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEA  231 (465)
Q Consensus       154 ~~~~~~~~a~~~~~~m~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A  231 (465)
                      ...|++++|.++++++..  ..+.+...+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|
T Consensus       116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A  194 (252)
T 2ho1_A          116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPA  194 (252)
T ss_dssp             HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHH
Confidence            899999999999998874  444467778888888888899999999988887753 33577788888888888999999


Q ss_pred             HHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 048269          232 MKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKR  277 (465)
Q Consensus       232 ~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  277 (465)
                      .+.++.+.+.  .|.+...+..+...+...|+.++|.++++++.+.
T Consensus       195 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~  238 (252)
T 2ho1_A          195 RQYYDLFAQG--GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL  238 (252)
T ss_dssp             HHHHHHHHTT--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHh--CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            9888888764  4436677888888888888888888888888775

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.66  E-value=8e-14  Score=118.82  Aligned_cols=202  Identities=11%  Similarity=-0.040  Sum_probs=153.0

Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 048269           73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKT  152 (465)
Q Consensus        73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~  152 (465)
                      +...+..+...+...|++++|.+.|+.+.+..+.+..++..+...+...|++++|.+.++.+.+.. +.+..++..+..+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~   85 (225)
T 2vq2_A            7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF   85 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence            566778888888888888888888888887776677788888888888888888888888887754 4567777778888


Q ss_pred             HHcC-CCHHHHHHHHHHhhc--CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHH
Q 048269          153 LCQR-KLVVEAKYLILKLSE--WIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDD  229 (465)
Q Consensus       153 ~~~~-~~~~~a~~~~~~m~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~  229 (465)
                      +... |++++|...++++..  ..+.+...+..+...+...|++++|...|+++.+.. +.+...+..+...+.+.|+++
T Consensus        86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~  164 (225)
T 2vq2_A           86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLG  164 (225)
T ss_dssp             HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHH
Confidence            8888 888888888888774  333446677777888888888888888888877653 234677777788888888888


Q ss_pred             HHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 048269          230 EAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKR  277 (465)
Q Consensus       230 ~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  277 (465)
                      +|.+.++.+...... .+...+..+...+...|+.+.+..+++.+.+.
T Consensus       165 ~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  211 (225)
T 2vq2_A          165 DADYYFKKYQSRVEV-LQADDLLLGWKIAKALGNAQAAYEYEAQLQAN  211 (225)
T ss_dssp             HHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence            888888877765221 36666777777777888888888887777654

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.66  E-value=4.1e-14  Score=123.46  Aligned_cols=212  Identities=11%  Similarity=-0.004  Sum_probs=176.3

Q ss_pred             CCChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC-------hHHHHHHHHHHHhcC
Q 048269           50 PLSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVN-------DKTFKIALMTLAEVR  122 (465)
Q Consensus        50 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~  122 (465)
                      .++++.|+..|+.++...    .+...|..+..++...|++++|.+.+++..+..+.+       ..++..+...+...|
T Consensus        18 ~~~~~~A~~~~~~a~~~~----~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   93 (258)
T 3uq3_A           18 ARQFDEAIEHYNKAWELH----KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLG   93 (258)
T ss_dssp             TTCHHHHHHHHHHHHHHS----CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred             hccHHHHHHHHHHHHHhh----ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcc
Confidence            358899999999985544    588999999999999999999999999988755422       578999999999999


Q ss_pred             CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 048269          123 ELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNL  202 (465)
Q Consensus       123 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  202 (465)
                      ++++|+..|+...+.  .|+.       ..+...|++++|...++++....+.+...+..+...+...|++++|...|+.
T Consensus        94 ~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  164 (258)
T 3uq3_A           94 DLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTE  164 (258)
T ss_dssp             CHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            999999999999985  4554       3455668889999999998854556677888888899999999999999999


Q ss_pred             HHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 048269          203 MTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKR  277 (465)
Q Consensus       203 m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  277 (465)
                      ..+.. +.+..++..+..++.+.|++++|.+.++...+.  .|.+..+|..+..++...|++++|...+++..+.
T Consensus       165 a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  236 (258)
T 3uq3_A          165 MIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNFVRAYIRKATAQIAVKEYASALETLDAARTK  236 (258)
T ss_dssp             HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence            88764 346788888888999999999999999888876  4546778888888888999999999888887764

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.65  E-value=4.1e-14  Score=124.66  Aligned_cols=236  Identities=10%  Similarity=-0.044  Sum_probs=157.5

Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC--HHHHHHHH
Q 048269           73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYS--LEMLNKVV  150 (465)
Q Consensus        73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll  150 (465)
                      |+..+......+...|++++|+..|+++.+.++.+..++..+..++...|++++|+..++...+.+..++  ...|..+.
T Consensus         2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg   81 (272)
T 3u4t_A            2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG   81 (272)
T ss_dssp             ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence            4455666777888888888888888888887776666788888888888888888888888877331111  23477777


Q ss_pred             HHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHH
Q 048269          151 KTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDE  230 (465)
Q Consensus       151 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~  230 (465)
                      .++...|++++|+..|++.....+.+..++..+...|...|++++|...|++..+.. +.+...+..+...+...+++++
T Consensus        82 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~  160 (272)
T 3u4t_A           82 KILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVK  160 (272)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHH
Confidence            888888888888888888774345566778888888888888888888888777652 3355666666634444458888


Q ss_pred             HHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCC---hHHHHHHHHHHHHCC-CCCCH------HHHHHHHHHHHhcCCHH
Q 048269          231 AMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGK---ISQAYTMLEEMFKRG-IEADN------LTLSSIIYGLLARGRLR  300 (465)
Q Consensus       231 A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~-~~~~~------~~~~~li~~~~~~~~~~  300 (465)
                      |.+.|+...+.  .|.+...+..+..++...|+   ++.|...+++..+.. -.|+.      ..|..+...|...|+++
T Consensus       161 A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  238 (272)
T 3u4t_A          161 ADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV  238 (272)
T ss_dssp             HHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence            88888877765  44355666667777777776   666777776665431 11221      33444455555555555


Q ss_pred             HHHHHHHHhcC
Q 048269          301 EAYKVVEEIEK  311 (465)
Q Consensus       301 ~a~~~~~~~~~  311 (465)
                      +|...|+++.+
T Consensus       239 ~A~~~~~~al~  249 (272)
T 3u4t_A          239 KADAAWKNILA  249 (272)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            55555555443

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.65  E-value=1.8e-14  Score=122.30  Aligned_cols=196  Identities=13%  Similarity=0.038  Sum_probs=96.9

Q ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHH
Q 048269          107 NDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKG  186 (465)
Q Consensus       107 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~  186 (465)
                      +...+..+...+.+.|++++|+..|+...+.. +.+...+..+..++.+.|++++|+..|++.....+.+...+..+...
T Consensus         4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~   82 (217)
T 2pl2_A            4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEA   82 (217)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            34455556666666666666666666665543 44555566666666666666666666666553334455556666666


Q ss_pred             HHhc-----------CCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHH
Q 048269          187 YCDV-----------GDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVI  255 (465)
Q Consensus       187 ~~~~-----------g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li  255 (465)
                      +...           |++++|+..|++..+.. +-+...+..+..++...|++++|++.|++..+..  . +...+..+.
T Consensus        83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~-~~~~~~~la  158 (217)
T 2pl2_A           83 YVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--D-TPEIRSALA  158 (217)
T ss_dssp             HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--C-CHHHHHHHH
T ss_pred             HHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--c-chHHHHHHH
Confidence            6555           55555555555554432 1134444555555555555555555555554443  2 444555555


Q ss_pred             HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048269          256 DWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEE  308 (465)
Q Consensus       256 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~  308 (465)
                      .+|...|++++|...|++..+... .+...+..+...+...|++++|...|++
T Consensus       159 ~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~  210 (217)
T 2pl2_A          159 ELYLSMGRLDEALAQYAKALEQAP-KDLDLRVRYASALLLKGKAEEAARAAAL  210 (217)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTC-------------
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            555555555555555555544321 1344444444445555555555544443

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.65  E-value=1.6e-14  Score=124.84  Aligned_cols=204  Identities=12%  Similarity=-0.003  Sum_probs=151.9

Q ss_pred             CCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 048269           71 AHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVV  150 (465)
Q Consensus        71 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll  150 (465)
                      ..+...|..+...+...|++++|...|+++.+..+.+..++..+...+...|++++|+..|+.+.+.. +.+...+..+.
T Consensus        20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la   98 (243)
T 2q7f_A           20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG   98 (243)
T ss_dssp             ----------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence            34667788888888999999999999999988777778888889999999999999999999888764 45778888888


Q ss_pred             HHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHH
Q 048269          151 KTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDE  230 (465)
Q Consensus       151 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~  230 (465)
                      ..+...|++++|.+.++++....+.+...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++
T Consensus        99 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~  177 (243)
T 2q7f_A           99 NVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE  177 (243)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence            889999999999999998874446677888888888999999999999998887753 3467788888888889999999


Q ss_pred             HHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 048269          231 AMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRG  278 (465)
Q Consensus       231 A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~  278 (465)
                      |.+.++.+...  .|.+..++..+..+|...|++++|...++++.+..
T Consensus       178 A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  223 (243)
T 2q7f_A          178 ALSQFAAVTEQ--DPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ  223 (243)
T ss_dssp             HHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHh--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence            99999888766  34367788888888888999999999988887753

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.63  E-value=1.6e-13  Score=119.36  Aligned_cols=198  Identities=10%  Similarity=-0.080  Sum_probs=99.6

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHH
Q 048269          109 KTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYC  188 (465)
Q Consensus       109 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~  188 (465)
                      ..+..+...+...|++++|+..|+.+.+.. +.+...+..+..++...|++++|.+.++++....+.+...+..+...|.
T Consensus        38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~  116 (252)
T 2ho1_A           38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY  116 (252)
T ss_dssp             HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH
Confidence            345555555556666666666666555543 3345555555555555566666666555555222334555555555555


Q ss_pred             hcCCHHHHHHHHHHHHHCCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHH
Q 048269          189 DVGDLIEASKIWNLMTDEGFEP-SIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQA  267 (465)
Q Consensus       189 ~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a  267 (465)
                      ..|++++|...|+.+.+.+..| +...+..+...+...|++++|.+.+++..+.  .|.+...+..+...+...|++++|
T Consensus       117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A  194 (252)
T 2ho1_A          117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--NRNQPSVALEMADLLYKEREYVPA  194 (252)
T ss_dssp             HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHH
Confidence            5555555555555555422222 3344455555555555555555555555443  222344455555555555555555


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 048269          268 YTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIE  310 (465)
Q Consensus       268 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~  310 (465)
                      ...++++.+.. +.+...+..+...+...|+.++|...++++.
T Consensus       195 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~  236 (252)
T 2ho1_A          195 RQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLK  236 (252)
T ss_dssp             HHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            55555544432 1233344444444444444444444444443

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.63  E-value=9.1e-14  Score=127.74  Aligned_cols=233  Identities=9%  Similarity=0.017  Sum_probs=194.8

Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCC-HHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 048269           73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRE-LKKMVNFFHIMNDCGCEYSLEMLNKVVK  151 (465)
Q Consensus        73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ll~  151 (465)
                      +...|+.+..++.+.|++++|++.++++.+.++.+..+|+.+..++...|+ +++|+..|+++.+.. +-+...|+.+..
T Consensus        96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~  174 (382)
T 2h6f_A           96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV  174 (382)
T ss_dssp             HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence            356788888899999999999999999999988888899999999999997 999999999999875 557888999999


Q ss_pred             HHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHh-cCCHHH
Q 048269          152 TLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFK-INKDDE  230 (465)
Q Consensus       152 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~~  230 (465)
                      ++...|++++|+..|+++..-.+-+..+|..+..++...|++++|+..|+++.+.. +-+...|+.+..++.+ .|..++
T Consensus       175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~e  253 (382)
T 2h6f_A          175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR  253 (382)
T ss_dssp             HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred             HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchH
Confidence            99999999999999999885557788999999999999999999999999999874 2367889999999888 566577


Q ss_pred             H-----HHHHHHHHHcCCCCCCcchHHHHHHHHHhcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC------
Q 048269          231 A-----MKVFQMMRVKRMDDLGLSTYRIVIDWMCKRG--KISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARG------  297 (465)
Q Consensus       231 A-----~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~------  297 (465)
                      |     ++.|+.....  .|.+...|..+...+...|  ++++|.+.+.++ +. .+.+...+..+..+|.+.|      
T Consensus       254 A~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~  329 (382)
T 2h6f_A          254 AVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDN  329 (382)
T ss_dssp             HHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred             HHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccc
Confidence            7     4788888765  5657788888888888887  688999988887 33 3345677888888888764      


Q ss_pred             ---CHHHHHHHHHHh-cC
Q 048269          298 ---RLREAYKVVEEI-EK  311 (465)
Q Consensus       298 ---~~~~a~~~~~~~-~~  311 (465)
                         ..++|..+++++ .+
T Consensus       330 ~~~~~~~A~~~~~~l~~~  347 (382)
T 2h6f_A          330 KEDILNKALELCEILAKE  347 (382)
T ss_dssp             HHHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHHHH
Confidence               257888888888 55

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.63  E-value=1.5e-13  Score=117.06  Aligned_cols=200  Identities=8%  Similarity=-0.121  Sum_probs=116.5

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHH
Q 048269          108 DKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGY  187 (465)
Q Consensus       108 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~  187 (465)
                      ..++..+...+...|++++|+..|+.+.+.. +.+...+..+..++...|++++|.+.+++.....+.+..++..+...+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~   86 (225)
T 2vq2_A            8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFL   86 (225)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence            3456666666666677777777766666543 344556666666666666666666666666533344556666666666


Q ss_pred             Hhc-CCHHHHHHHHHHHHHCCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChH
Q 048269          188 CDV-GDLIEASKIWNLMTDEGFEP-SIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKIS  265 (465)
Q Consensus       188 ~~~-g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~  265 (465)
                      ... |++++|...++.+.+.+..| +...+..+..++...|++++|.+.++++.+.  .|.+...+..+...+...|+++
T Consensus        87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~  164 (225)
T 2vq2_A           87 CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLG  164 (225)
T ss_dssp             HTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHH
Confidence            666 66666666666666522222 2455566666666666666666666666554  2324555666666666666666


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 048269          266 QAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIE  310 (465)
Q Consensus       266 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~  310 (465)
                      +|...++++.+.....+...+..+...+...|+.+.+..+++.+.
T Consensus       165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  209 (225)
T 2vq2_A          165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ  209 (225)
T ss_dssp             HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            666666665554221244444444555555555555555555543

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.61  E-value=3e-12  Score=112.84  Aligned_cols=220  Identities=8%  Similarity=-0.059  Sum_probs=140.2

Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCCHHHHHH
Q 048269           73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAE----VRELKKMVNFFHIMNDCGCEYSLEMLNK  148 (465)
Q Consensus        73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~  148 (465)
                      ++.++..+...+...|++++|.+.|++..+.+  +..++..+...+..    .+++++|+..|++..+.+   +...+..
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~   79 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK--ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL   79 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence            56667777777777777777777777776633  34566667777777    777777777777777654   5666666


Q ss_pred             HHHHHHc----CCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCcHHHHHHHHH
Q 048269          149 VVKTLCQ----RKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCD----VGDLIEASKIWNLMTDEGFEPSIDVVDKMIE  220 (465)
Q Consensus       149 ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~  220 (465)
                      +...|..    .+++++|+..|++....  .+..++..+...|..    .+++++|+..|++..+.+   +...+..+..
T Consensus        80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~  154 (273)
T 1ouv_A           80 LGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGS  154 (273)
T ss_dssp             HHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred             HHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHH
Confidence            6677766    77777777777776621  255666666666666    677777777777766654   4455556666


Q ss_pred             HHHh----cCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048269          221 TFFK----INKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCK----RGKISQAYTMLEEMFKRGIEADNLTLSSIIYG  292 (465)
Q Consensus       221 ~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~  292 (465)
                      .|..    .+++++|.+.|+...+.+    +...+..+...|..    .+++++|...|++..+.+.   ...+..+...
T Consensus       155 ~~~~~~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~l~~~  227 (273)
T 1ouv_A          155 LYDAGRGTPKDLKKALASYDKACDLK----DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCFNLGAM  227 (273)
T ss_dssp             HHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHH
T ss_pred             HHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHHHHHHH
Confidence            6665    666677777666666542    34455566666666    6666666666666665532   3444445555


Q ss_pred             HHh----cCCHHHHHHHHHHh
Q 048269          293 LLA----RGRLREAYKVVEEI  309 (465)
Q Consensus       293 ~~~----~~~~~~a~~~~~~~  309 (465)
                      |.+    .+++++|...|++.
T Consensus       228 ~~~g~~~~~~~~~A~~~~~~a  248 (273)
T 1ouv_A          228 QYNGEGVTRNEKQAIENFKKG  248 (273)
T ss_dssp             HHTTSSSSCCSTTHHHHHHHH
T ss_pred             HHcCCCcccCHHHHHHHHHHH
Confidence            554    55555555555443

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.60  E-value=4.8e-13  Score=117.73  Aligned_cols=247  Identities=11%  Similarity=0.025  Sum_probs=162.1

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--cHHHHHHHHHHH
Q 048269          145 MLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEP--SIDVVDKMIETF  222 (465)
Q Consensus       145 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~--~~~~~~~li~~~  222 (465)
                      .+......+...|++++|+..|++.....+.+...+..+...|...|++++|+..++...+.+-.+  ....|..+...+
T Consensus         5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~   84 (272)
T 3u4t_A            5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL   84 (272)
T ss_dssp             CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence            344455666677777777777777664344455567777777777777777777777776632111  233467777777


Q ss_pred             HhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048269          223 FKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREA  302 (465)
Q Consensus       223 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a  302 (465)
                      ...|++++|.+.|+...+.  .|.+..++..+...|...|++++|...+++..+.. +.+...+..+...+...+++++|
T Consensus        85 ~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A  161 (272)
T 3u4t_A           85 MKKGQDSLAIQQYQAAVDR--DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKA  161 (272)
T ss_dssp             HHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHcccHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHH
Confidence            7777777777777777765  34356677777778888888888888887776652 23455666666233344588888


Q ss_pred             HHHHHHhcC---CCHhhHHHHHHHHHhcCC---HHHHHHHHHHHHHcC-CCCCHHHHHHHHHHhhcccCCCCCCCchHHH
Q 048269          303 YKVVEEIEK---PDISLYHGLIKGLLRLRR---AREATQVFREMIKRG-CEPTMHTYIMLLQGHLGKRGRKGPDPLVNFD  375 (465)
Q Consensus       303 ~~~~~~~~~---~~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~  375 (465)
                      ...|+++.+   .+...+..+...+...|+   +++|...|++..+.. -.|+.. -..+.                ..|
T Consensus       162 ~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~~----------------~~~  224 (272)
T 3u4t_A          162 DSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY-KDELI----------------EAN  224 (272)
T ss_dssp             HHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGG-HHHHH----------------HHH
T ss_pred             HHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccc-hHHHH----------------HHH
Confidence            888887776   335566667777777777   777888888877541 113211 11111                234


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh-hHHHH
Q 048269          376 TIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRF-DYNKF  413 (465)
Q Consensus       376 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l  413 (465)
                      ..+...|...|++++|.+.++++.+  +.|+.. .+..+
T Consensus       225 ~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~~~l  261 (272)
T 3u4t_A          225 EYIAYYYTINRDKVKADAAWKNILA--LDPTNKKAIDGL  261 (272)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHh--cCccHHHHHHHh
Confidence            5667778999999999999999997  456544 44433

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.60  E-value=8.9e-14  Score=130.45  Aligned_cols=270  Identities=9%  Similarity=-0.071  Sum_probs=211.6

Q ss_pred             HHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCh----HHHHHHHHHHHhcCCHHHHHHHHHHhhhC----C-CCCCHH
Q 048269           74 SITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVND----KTFKIALMTLAEVRELKKMVNFFHIMNDC----G-CEYSLE  144 (465)
Q Consensus        74 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~  144 (465)
                      ...+..+...+...|++++|+..|+++.+.++.+.    .++..+...+...|++++|+..|++..+.    + .+....
T Consensus        48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  127 (411)
T 4a1s_A           48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK  127 (411)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence            34455677888999999999999999998776554    47888999999999999999999987663    1 123456


Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHhhc-----C-CCCCHHhHHHHHHHHHhcCC-----------------HHHHHHHHH
Q 048269          145 MLNKVVKTLCQRKLVVEAKYLILKLSE-----W-IKPNEIAYGWLIKGYCDVGD-----------------LIEASKIWN  201 (465)
Q Consensus       145 ~~~~ll~~~~~~~~~~~a~~~~~~m~~-----~-~~~~~~~~~~li~~~~~~g~-----------------~~~a~~~~~  201 (465)
                      ++..+...|...|++++|...+++...     + .+....++..+...|...|+                 +++|...++
T Consensus       128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~  207 (411)
T 4a1s_A          128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ  207 (411)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence            788888999999999999999998761     1 22335678888999999999                 999999988


Q ss_pred             HHHHC----CCC-CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC----cchHHHHHHHHHhcCChHHHHHHHH
Q 048269          202 LMTDE----GFE-PSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLG----LSTYRIVIDWMCKRGKISQAYTMLE  272 (465)
Q Consensus       202 ~m~~~----g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~  272 (465)
                      +..+.    +-. ....++..+...+...|++++|.+.+++..+......+    ..++..+...|...|++++|...++
T Consensus       208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  287 (411)
T 4a1s_A          208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK  287 (411)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence            87542    111 13457888999999999999999999988654211001    2378889999999999999999999


Q ss_pred             HHHHCCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC-----CC----HhhHHHHHHHHHhcCCHHHHHHHHH
Q 048269          273 EMFKRGIE-----ADNLTLSSIIYGLLARGRLREAYKVVEEIEK-----PD----ISLYHGLIKGLLRLRRAREATQVFR  338 (465)
Q Consensus       273 ~m~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~  338 (465)
                      +.......     ....++..+...|...|++++|...+++...     .+    ...+..+...|...|++++|.+.|+
T Consensus       288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  367 (411)
T 4a1s_A          288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE  367 (411)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            87753211     1246678888999999999999999998876     22    3467788889999999999999999


Q ss_pred             HHHHc
Q 048269          339 EMIKR  343 (465)
Q Consensus       339 ~m~~~  343 (465)
                      +..+.
T Consensus       368 ~al~~  372 (411)
T 4a1s_A          368 QHLQL  372 (411)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99854

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.60  E-value=3.3e-12  Score=112.56  Aligned_cols=223  Identities=11%  Similarity=-0.010  Sum_probs=196.9

Q ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHhhcCCCCCHHhHHH
Q 048269          107 NDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQ----RKLVVEAKYLILKLSEWIKPNEIAYGW  182 (465)
Q Consensus       107 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~  182 (465)
                      ++.++..+...+...|++++|+..|+...+   +.+...+..+...|..    .+++++|...|++....  .+...+..
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~---~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~   79 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD---LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--NYSNGCHL   79 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHH
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC--CCHHHHHH
Confidence            566788899999999999999999999998   3466788889999999    99999999999998832  27888999


Q ss_pred             HHHHHHh----cCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCCcchHHHH
Q 048269          183 LIKGYCD----VGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFK----INKDDEAMKVFQMMRVKRMDDLGLSTYRIV  254 (465)
Q Consensus       183 li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l  254 (465)
                      +...|..    .+++++|+..|++..+.+   +...+..+...|..    .+++++|.+.|+...+.+    +...+..+
T Consensus        80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~----~~~a~~~l  152 (273)
T 1ouv_A           80 LGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN----DGDGCTIL  152 (273)
T ss_dssp             HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT----CHHHHHHH
T ss_pred             HHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC----cHHHHHHH
Confidence            9999999    999999999999999875   77889999999999    999999999999998864    45678888


Q ss_pred             HHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhcC-CCHhhHHHHHHHHH
Q 048269          255 IDWMCK----RGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLA----RGRLREAYKVVEEIEK-PDISLYHGLIKGLL  325 (465)
Q Consensus       255 i~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~  325 (465)
                      ...|..    .+++++|...|++..+.+   +...+..+...|..    .+++++|...|++..+ .+...+..+...|.
T Consensus       153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~  229 (273)
T 1ouv_A          153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQY  229 (273)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            888888    999999999999998875   56778888899999    9999999999998877 55778888888999


Q ss_pred             h----cCCHHHHHHHHHHHHHcC
Q 048269          326 R----LRRAREATQVFREMIKRG  344 (465)
Q Consensus       326 ~----~~~~~~a~~~~~~m~~~~  344 (465)
                      .    .+++++|.+.|++..+.|
T Consensus       230 ~g~~~~~~~~~A~~~~~~a~~~~  252 (273)
T 1ouv_A          230 NGEGVTRNEKQAIENFKKGCKLG  252 (273)
T ss_dssp             TTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             cCCCcccCHHHHHHHHHHHHHcC
Confidence            8    899999999999999775

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.59  E-value=1.1e-13  Score=122.15  Aligned_cols=247  Identities=9%  Similarity=-0.028  Sum_probs=191.7

Q ss_pred             ChhHHHHHHHHHhhcCCCCC-CCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 048269           52 SWRPVYLFFQYTQKAQPCFA-HNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNF  130 (465)
Q Consensus        52 ~~~~a~~~f~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  130 (465)
                      +++.|+..|+.++...+.-. .+..+|..+...+...|++++|...|+++.+.++.+..++..+...+...|++++|+..
T Consensus        20 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~   99 (275)
T 1xnf_A           20 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEA   99 (275)
T ss_dssp             HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHH
Confidence            67899999999844322111 25788999999999999999999999999998888889999999999999999999999


Q ss_pred             HHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 048269          131 FHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEP  210 (465)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~  210 (465)
                      |+.+.+.. +.+..++..+..++...|++++|...|+++... .|+.......+..+...|++++|...+....... ++
T Consensus       100 ~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~  176 (275)
T 1xnf_A          100 FDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD-DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DK  176 (275)
T ss_dssp             HHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CC
T ss_pred             HHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-Cc
Confidence            99999864 456888999999999999999999999998832 2333344445556677799999999998877653 33


Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 048269          211 SIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMD--DLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSS  288 (465)
Q Consensus       211 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~  288 (465)
                      +...+ .++..+...++.++|.+.++........  |.+..++..+...|...|++++|...|++.....  |+.  +..
T Consensus       177 ~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~--~~~  251 (275)
T 1xnf_A          177 EQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN--FVE  251 (275)
T ss_dssp             CSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT--CHH
T ss_pred             chHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh--HHH
Confidence            43334 4777888889999999999988654211  1125788899999999999999999999998763  322  223


Q ss_pred             HHHHHHhcCCHHHHHHHH
Q 048269          289 IIYGLLARGRLREAYKVV  306 (465)
Q Consensus       289 li~~~~~~~~~~~a~~~~  306 (465)
                      ...++...|++++|...+
T Consensus       252 ~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          252 HRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             HHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHHhhHHHH
Confidence            355677778888887665

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.59  E-value=2.8e-13  Score=126.58  Aligned_cols=273  Identities=10%  Similarity=-0.030  Sum_probs=212.7

Q ss_pred             CCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCCC-
Q 048269           71 AHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVN----DKTFKIALMTLAEVRELKKMVNFFHIMNDC----GCEY-  141 (465)
Q Consensus        71 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-  141 (465)
                      ......+......+...|++++|...|+++.+.++.+    ..++..+...+...|++++|+..++.....    +..| 
T Consensus         6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   85 (406)
T 3sf4_A            6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG   85 (406)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence            3466777888899999999999999999998876654    357888899999999999999999987552    2122 


Q ss_pred             CHHHHHHHHHHHHcCCCHHHHHHHHHHhhc--CCCCC----HHhHHHHHHHHHhcCC--------------------HHH
Q 048269          142 SLEMLNKVVKTLCQRKLVVEAKYLILKLSE--WIKPN----EIAYGWLIKGYCDVGD--------------------LIE  195 (465)
Q Consensus       142 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~--~~~~~----~~~~~~li~~~~~~g~--------------------~~~  195 (465)
                      ...++..+...+...|++++|...+++...  ...++    ..++..+...|...|+                    +++
T Consensus        86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~  165 (406)
T 3sf4_A           86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA  165 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence            255678888999999999999999998761  11112    4578888999999999                    999


Q ss_pred             HHHHHHHHHHC----CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-C---CCcchHHHHHHHHHhcCChHH
Q 048269          196 ASKIWNLMTDE----GFEP-SIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMD-D---LGLSTYRIVIDWMCKRGKISQ  266 (465)
Q Consensus       196 a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~---~~~~~~~~li~~~~~~~~~~~  266 (465)
                      |...+....+.    +..+ ...++..+...+...|++++|.+.+++..+.... +   ....++..+...|...|++++
T Consensus       166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  245 (406)
T 3sf4_A          166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET  245 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence            99998887542    2111 2457888899999999999999999987654111 1   012378888999999999999


Q ss_pred             HHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhcC-----CC----HhhHHHHHHHHHhcCCHHH
Q 048269          267 AYTMLEEMFKR----GIEA-DNLTLSSIIYGLLARGRLREAYKVVEEIEK-----PD----ISLYHGLIKGLLRLRRARE  332 (465)
Q Consensus       267 a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~  332 (465)
                      |...+++....    +..+ ...++..+...|...|++++|...+++...     .+    ..++..+...|...|++++
T Consensus       246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  325 (406)
T 3sf4_A          246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ  325 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence            99999987643    1111 145678888999999999999999998876     22    5567788889999999999


Q ss_pred             HHHHHHHHHHc
Q 048269          333 ATQVFREMIKR  343 (465)
Q Consensus       333 a~~~~~~m~~~  343 (465)
                      |...+++..+.
T Consensus       326 A~~~~~~al~~  336 (406)
T 3sf4_A          326 AMHFAEKHLEI  336 (406)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988753

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.58  E-value=1.2e-13  Score=119.27  Aligned_cols=200  Identities=11%  Similarity=-0.004  Sum_probs=121.4

Q ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHH
Q 048269          107 NDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKG  186 (465)
Q Consensus       107 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~  186 (465)
                      ...+|..+...+...|++++|+..|+.+.+.. +.+...+..+..++...|++++|+..+++.....+.+..++..+...
T Consensus        22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~  100 (243)
T 2q7f_A           22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNV  100 (243)
T ss_dssp             --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            34456667777777777777777777777643 44666777777777777777777777777763335566777777777


Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHH
Q 048269          187 YCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQ  266 (465)
Q Consensus       187 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~  266 (465)
                      +...|++++|.+.++++.+.. +.+...+..+...+.+.|++++|.+.++++.+.  .|.+...+..+...+...|++++
T Consensus       101 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~  177 (243)
T 2q7f_A          101 YVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDE  177 (243)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHH
T ss_pred             HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHH
Confidence            777777777777777776653 335666777777777777777777777777655  33355666677777777777777


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC
Q 048269          267 AYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK  311 (465)
Q Consensus       267 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~  311 (465)
                      |...++++.+.. +.+..++..+..+|...|++++|...++++.+
T Consensus       178 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  221 (243)
T 2q7f_A          178 ALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAID  221 (243)
T ss_dssp             HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence            777777766543 22455566666666666666666666665544

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.58  E-value=2.9e-13  Score=122.84  Aligned_cols=269  Identities=10%  Similarity=-0.037  Sum_probs=205.4

Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCC-CCHHH
Q 048269           75 ITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVN----DKTFKIALMTLAEVRELKKMVNFFHIMNDC----GCE-YSLEM  145 (465)
Q Consensus        75 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~  145 (465)
                      ..+......+...|++++|...|+++.+.++.+    ..++..+...+...|++++|++.++...+.    +.. ....+
T Consensus         6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~   85 (338)
T 3ro2_A            6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA   85 (338)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence            345556778889999999999999998876644    357788889999999999999999887552    111 23556


Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHhh--cCCCCC----HHhHHHHHHHHHhcCC--------------------HHHHHHH
Q 048269          146 LNKVVKTLCQRKLVVEAKYLILKLS--EWIKPN----EIAYGWLIKGYCDVGD--------------------LIEASKI  199 (465)
Q Consensus       146 ~~~ll~~~~~~~~~~~a~~~~~~m~--~~~~~~----~~~~~~li~~~~~~g~--------------------~~~a~~~  199 (465)
                      +..+...+...|++++|...+++..  ....++    ..++..+...|...|+                    +++|...
T Consensus        86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~  165 (338)
T 3ro2_A           86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL  165 (338)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence            7888889999999999999999866  111122    3478888889999999                    9999998


Q ss_pred             HHHHHHC----CCC-CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCCCCcchHHHHHHHHHhcCChHHHHHH
Q 048269          200 WNLMTDE----GFE-PSIDVVDKMIETFFKINKDDEAMKVFQMMRVKR----MDDLGLSTYRIVIDWMCKRGKISQAYTM  270 (465)
Q Consensus       200 ~~~m~~~----g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~~~~~~~~~~li~~~~~~~~~~~a~~~  270 (465)
                      +++..+.    +.. ....++..+...+...|++++|.+.+++..+..    ..+....++..+...+...|++++|...
T Consensus       166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  245 (338)
T 3ro2_A          166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY  245 (338)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            8877542    111 124578888899999999999999998876531    1111123788888999999999999999


Q ss_pred             HHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHhcC-----CC----HhhHHHHHHHHHhcCCHHHHHHH
Q 048269          271 LEEMFKRGIE-AD----NLTLSSIIYGLLARGRLREAYKVVEEIEK-----PD----ISLYHGLIKGLLRLRRAREATQV  336 (465)
Q Consensus       271 ~~~m~~~~~~-~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~  336 (465)
                      +++....... .+    ..++..+...|...|++++|...+++...     .+    ..++..+...|...|++++|...
T Consensus       246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  325 (338)
T 3ro2_A          246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF  325 (338)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence            9887643111 11    45677888899999999999999998866     22    44677888899999999999999


Q ss_pred             HHHHHHc
Q 048269          337 FREMIKR  343 (465)
Q Consensus       337 ~~~m~~~  343 (465)
                      +++..+.
T Consensus       326 ~~~a~~~  332 (338)
T 3ro2_A          326 AEKHLEI  332 (338)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHHH
Confidence            9998854

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.57  E-value=8.3e-13  Score=121.35  Aligned_cols=239  Identities=9%  Similarity=-0.031  Sum_probs=201.6

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCC-HHHHHHHHHHhhcCCCCCHHhHHHHHHH
Q 048269          108 DKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKL-VVEAKYLILKLSEWIKPNEIAYGWLIKG  186 (465)
Q Consensus       108 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~li~~  186 (465)
                      ..+|..+...+.+.|++++|+..|+.+.+.. +-+..+|+.+..++...|+ +++|+..|++.....+.+...|..+..+
T Consensus        97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~  175 (382)
T 2h6f_A           97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL  175 (382)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            4578888899999999999999999999875 5678899999999999997 9999999999985557789999999999


Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHh-cCChH
Q 048269          187 YCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCK-RGKIS  265 (465)
Q Consensus       187 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~-~~~~~  265 (465)
                      +...|++++|+..|+++.+.. +-+...|..+..++.+.|++++|++.|+++.+.  .|.+...|+.+..++.. .|..+
T Consensus       176 ~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~  252 (382)
T 2h6f_A          176 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYND  252 (382)
T ss_dssp             HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred             HHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcch
Confidence            999999999999999999874 347889999999999999999999999999987  56588899999999999 66657


Q ss_pred             HH-----HHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHhcC--CCHhhHHHHHHHHHhcC--------
Q 048269          266 QA-----YTMLEEMFKRGIEADNLTLSSIIYGLLARG--RLREAYKVVEEIEK--PDISLYHGLIKGLLRLR--------  328 (465)
Q Consensus       266 ~a-----~~~~~~m~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~--------  328 (465)
                      +|     +..+++...... -+...|..+...+...|  ++++|...+.++..  .+...+..+...|.+.|        
T Consensus       253 eA~~~~el~~~~~Al~l~P-~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~  331 (382)
T 2h6f_A          253 RAVLEREVQYTLEMIKLVP-HNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKE  331 (382)
T ss_dssp             HHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred             HHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence            77     588888887643 26778888888888888  68999999998822  55677888888888864        


Q ss_pred             -CHHHHHHHHHHH-HHcCCCCCHHHHH
Q 048269          329 -RAREATQVFREM-IKRGCEPTMHTYI  353 (465)
Q Consensus       329 -~~~~a~~~~~~m-~~~~~~p~~~~~~  353 (465)
                       ..++|+++|+++ .+  +.|....|.
T Consensus       332 ~~~~~A~~~~~~l~~~--~DP~r~~~w  356 (382)
T 2h6f_A          332 DILNKALELCEILAKE--KDTIRKEYW  356 (382)
T ss_dssp             HHHHHHHHHHHHHHHT--TCGGGHHHH
T ss_pred             HHHHHHHHHHHHHHHH--hCchhHHHH
Confidence             358999999998 63  466554443

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.54  E-value=9.3e-13  Score=123.05  Aligned_cols=297  Identities=10%  Similarity=-0.055  Sum_probs=221.5

Q ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC----HHHHHHHHHHHHcCCCHHHHHHHHHHhh---c--CC-CCC
Q 048269          107 NDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYS----LEMLNKVVKTLCQRKLVVEAKYLILKLS---E--WI-KPN  176 (465)
Q Consensus       107 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~---~--~~-~~~  176 (465)
                      ....+......+...|++++|+..|+.+.+.+ +.+    ..++..+...+...|++++|...+++..   .  +. +..
T Consensus         8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   86 (406)
T 3sf4_A            8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE   86 (406)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence            44567778889999999999999999998864 333    3578888999999999999999999865   1  11 223


Q ss_pred             HHhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CcHHHHHHHHHHHHhcCC--------------------HHHH
Q 048269          177 EIAYGWLIKGYCDVGDLIEASKIWNLMTDE----GFE-PSIDVVDKMIETFFKINK--------------------DDEA  231 (465)
Q Consensus       177 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~-~~~~~~~~li~~~~~~g~--------------------~~~A  231 (465)
                      ..++..+...|...|++++|...+++..+.    +-. ....++..+...+...|+                    +++|
T Consensus        87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A  166 (406)
T 3sf4_A           87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA  166 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence            567888899999999999999999988763    101 124578889999999999                    9999


Q ss_pred             HHHHHHHHHc----CCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHH
Q 048269          232 MKVFQMMRVK----RMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGI-EAD----NLTLSSIIYGLLARGRLREA  302 (465)
Q Consensus       232 ~~~~~~m~~~----~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~~~~li~~~~~~~~~~~a  302 (465)
                      .+.+++....    +..+....++..+...|...|++++|...+++..+... .++    ..++..+...|...|++++|
T Consensus       167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  246 (406)
T 3sf4_A          167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA  246 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence            9998876542    21221345788889999999999999999998875311 112    33678888899999999999


Q ss_pred             HHHHHHhcC-----CC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHhhcccCCCCCCCch
Q 048269          303 YKVVEEIEK-----PD----ISLYHGLIKGLLRLRRAREATQVFREMIKRGC-EPTMHTYIMLLQGHLGKRGRKGPDPLV  372 (465)
Q Consensus       303 ~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~~~~~~~~~~  372 (465)
                      ...+++...     .+    ..++..+...|...|++++|...+++..+..- ..+....                   .
T Consensus       247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~-------------------~  307 (406)
T 3sf4_A          247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGE-------------------G  307 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH-------------------H
T ss_pred             HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHH-------------------H
Confidence            999998876     22    55778888899999999999999999875411 1111111                   1


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HhhHHHHHHHHhhccch
Q 048269          373 NFDTIFVGGLVKAGKSLDAAKYVERVMNR----GVEVP-RFDYNKFLHYYSNEEGV  423 (465)
Q Consensus       373 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~ll~~~~~~g~~  423 (465)
                      .++..+...|...|++++|.+.+++..+.    +..+. ..++..+...+...|+.
T Consensus       308 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  363 (406)
T 3sf4_A          308 RACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS  363 (406)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence            23455677789999999999999988752    22222 33667777777777765

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.54  E-value=3.9e-13  Score=126.08  Aligned_cols=279  Identities=12%  Similarity=0.025  Sum_probs=151.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH----HHHHHHHHHHHcCCCHHHHHHHHHHhhc---C---CCCCHHh
Q 048269          110 TFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSL----EMLNKVVKTLCQRKLVVEAKYLILKLSE---W---IKPNEIA  179 (465)
Q Consensus       110 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~---~---~~~~~~~  179 (465)
                      .+..+...+...|++++|+..|+++.+.+ +.+.    ..+..+..+|...|++++|+..+++...   .   .+....+
T Consensus        50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  128 (411)
T 4a1s_A           50 ELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS  128 (411)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence            34455556666677777777777666643 2222    3455566666666666666666666541   0   1222344


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCcHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCC
Q 048269          180 YGWLIKGYCDVGDLIEASKIWNLMTDE----GF-EPSIDVVDKMIETFFKINK----------DDEAMKVFQMMRVKRMD  244 (465)
Q Consensus       180 ~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~~~  244 (465)
                      +..+...|...|++++|...+++..+.    +- .....++..+...|...|+          +++|.+.          
T Consensus       129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~----------  198 (411)
T 4a1s_A          129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA----------  198 (411)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHH----------
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHH----------
Confidence            555555555556666666555554432    00 1112344444444555555          0000000          


Q ss_pred             CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC-----CC-
Q 048269          245 DLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKR----GI-EADNLTLSSIIYGLLARGRLREAYKVVEEIEK-----PD-  313 (465)
Q Consensus       245 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~-  313 (465)
                                         +++|...+++..+.    +. ......+..+...|...|++++|...+++..+     .+ 
T Consensus       199 -------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  259 (411)
T 4a1s_A          199 -------------------LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDR  259 (411)
T ss_dssp             -------------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred             -------------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCc
Confidence                               44444444433221    10 01123444555555566666666666655544     11 


Q ss_pred             ---HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcCCHH
Q 048269          314 ---ISLYHGLIKGLLRLRRAREATQVFREMIKRGCE-PTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSL  389 (465)
Q Consensus       314 ---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  389 (465)
                         ...+..+...|...|++++|...|++..+.... .+...                   ...++..+...|...|+++
T Consensus       260 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-------------------~~~~~~~la~~~~~~g~~~  320 (411)
T 4a1s_A          260 AAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREV-------------------EAQSCYSLGNTYTLLHEFN  320 (411)
T ss_dssp             HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHH-------------------HHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHH-------------------HHHHHHHHHHHHHHcCCHH
Confidence               225666777777788888888888777643110 11110                   0123445666778888888


Q ss_pred             HHHHHHHHHHhC----CCCC-CHhhHHHHHHHHhhccchHHHHHHHHHHHHcC
Q 048269          390 DAAKYVERVMNR----GVEV-PRFDYNKFLHYYSNEEGVVMFEEVGKKLREVG  437 (465)
Q Consensus       390 ~A~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g  437 (465)
                      +|.+.+++..+.    +..+ ...++..+...+...|++++|...+++..+..
T Consensus       321 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  373 (411)
T 4a1s_A          321 TAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA  373 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            888888887652    1111 12367777888888888888888888888763

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.54  E-value=6.6e-12  Score=112.70  Aligned_cols=218  Identities=10%  Similarity=-0.003  Sum_probs=124.8

Q ss_pred             hHHHHHHHHHhhCCCCChHHHHHHHHHHHh-------cCCH-------HHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcC
Q 048269           91 DLFWETLQEMGRRRLVNDKTFKIALMTLAE-------VREL-------KKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQR  156 (465)
Q Consensus        91 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~  156 (465)
                      ++|..+|+++....+.++..|..++..+..       .|++       ++|..+|++..+.-.+-+...|..++..+.+.
T Consensus        33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~  112 (308)
T 2ond_A           33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR  112 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence            566677777776666666666666666543       3554       66666666666521133455666666666666


Q ss_pred             CCHHHHHHHHHHhhcCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHH-hcCCHHHHHHH
Q 048269          157 KLVVEAKYLILKLSEWIKPNEI-AYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFF-KINKDDEAMKV  234 (465)
Q Consensus       157 ~~~~~a~~~~~~m~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~-~~g~~~~A~~~  234 (465)
                      |++++|..+|++.....+.+.. +|..+...+.+.|++++|..+|++..+.+ +.+...|........ ..|++++|.++
T Consensus       113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~  191 (308)
T 2ond_A          113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKI  191 (308)
T ss_dssp             TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            6666666666666632222232 56666666666666666666666666543 223333433322221 24666666666


Q ss_pred             HHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHhcC
Q 048269          235 FQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRG-IEA--DNLTLSSIIYGLLARGRLREAYKVVEEIEK  311 (465)
Q Consensus       235 ~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~  311 (465)
                      |+...+.  .|.+...|..++..+.+.|++++|..+|++..... ..|  ....|..++..+.+.|+.+.|..+++++.+
T Consensus       192 ~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~  269 (308)
T 2ond_A          192 FELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT  269 (308)
T ss_dssp             HHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            6666554  33355566666666666666666666666666542 233  244555555555555666666655555544

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.53  E-value=5.8e-12  Score=113.07  Aligned_cols=219  Identities=10%  Similarity=0.010  Sum_probs=181.2

Q ss_pred             hHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHH-------hcCCh-------hHHHHHHHHHhh-CCCCChHHHHHHHHHH
Q 048269           54 RPVYLFFQYTQKAQPCFAHNSITFNRMVDIIG-------KSRNI-------DLFWETLQEMGR-RRLVNDKTFKIALMTL  118 (465)
Q Consensus        54 ~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~a~~~~~~~~~-~~~~~~~~~~~l~~~~  118 (465)
                      +.|...|+.++...+.   ++..|..+...+.       +.|++       ++|..+|++..+ ..+.+...|..++..+
T Consensus        33 ~~a~~~~~~al~~~p~---~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~  109 (308)
T 2ond_A           33 KRVMFAYEQCLLVLGH---HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYE  109 (308)
T ss_dssp             HHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCC---CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            6788899998766655   8999999988876       35886       899999999998 4666778999999999


Q ss_pred             HhcCCHHHHHHHHHHhhhCCCCCC-HH-HHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHH-hcCCHHH
Q 048269          119 AEVRELKKMVNFFHIMNDCGCEYS-LE-MLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYC-DVGDLIE  195 (465)
Q Consensus       119 ~~~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~-~~g~~~~  195 (465)
                      .+.|++++|..+|+++.+.  .|+ .. +|..++..+.+.|++++|..+|++.....+.+...|........ ..|++++
T Consensus       110 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~  187 (308)
T 2ond_A          110 ESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSV  187 (308)
T ss_dssp             HHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred             HhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHH
Confidence            9999999999999999985  443 43 89999999999999999999999998544555566654444322 3699999


Q ss_pred             HHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCC-CcchHHHHHHHHHhcCChHHHHHHHHH
Q 048269          196 ASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKR-MDDL-GLSTYRIVIDWMCKRGKISQAYTMLEE  273 (465)
Q Consensus       196 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~  273 (465)
                      |..+|+...+.. +-+...|..++..+.+.|++++|..+|+...... ..|. ....|..++....+.|+.+.|..++++
T Consensus       188 A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~  266 (308)
T 2ond_A          188 AFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR  266 (308)
T ss_dssp             HHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            999999998753 3367889999999999999999999999999863 3441 456888899999999999999999999


Q ss_pred             HHHCC
Q 048269          274 MFKRG  278 (465)
Q Consensus       274 m~~~~  278 (465)
                      +.+..
T Consensus       267 a~~~~  271 (308)
T 2ond_A          267 RFTAF  271 (308)
T ss_dssp             HHHHT
T ss_pred             HHHHc
Confidence            88763

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.51  E-value=3.4e-12  Score=105.15  Aligned_cols=167  Identities=13%  Similarity=-0.031  Sum_probs=99.9

Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 048269           73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKT  152 (465)
Q Consensus        73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~  152 (465)
                      ++.+|..+...+.+.|++++|++.|++..+.++.+..++..+..++.+.|++++|+..+....... +.+...+..+...
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~   82 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA   82 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence            455666666666666666666666666666666566666666666666666666666666665543 3345555555556


Q ss_pred             HHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 048269          153 LCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAM  232 (465)
Q Consensus       153 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~  232 (465)
                      +...++++.|...+.+.....+.+...+..+...|.+.|++++|++.|++..+.. +-+..+|..+..+|.+.|++++|.
T Consensus        83 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~  161 (184)
T 3vtx_A           83 NFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEAV  161 (184)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHHH
Confidence            6666666666666666553334455555666666666666666666666655542 224455555556666666666666


Q ss_pred             HHHHHHHHc
Q 048269          233 KVFQMMRVK  241 (465)
Q Consensus       233 ~~~~~m~~~  241 (465)
                      +.|++..+.
T Consensus       162 ~~~~~al~~  170 (184)
T 3vtx_A          162 KYFKKALEK  170 (184)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHhC
Confidence            666555543

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.51  E-value=1.1e-12  Score=119.09  Aligned_cols=278  Identities=12%  Similarity=0.011  Sum_probs=151.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC----HHHHHHHHHHHHcCCCHHHHHHHHHHhh-----cC-CCCCHHh
Q 048269          110 TFKIALMTLAEVRELKKMVNFFHIMNDCGCEYS----LEMLNKVVKTLCQRKLVVEAKYLILKLS-----EW-IKPNEIA  179 (465)
Q Consensus       110 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~-----~~-~~~~~~~  179 (465)
                      .+......+...|++++|+..|+++.+.. +.+    ...+..+...+...|++++|.+.+++..     .+ .+....+
T Consensus         7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~   85 (338)
T 3ro2_A            7 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA   85 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence            34445556666677777777777666643 222    2445556666666666666666666643     01 1112334


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCc----HHHHHHHHHHHHhcCC-------------HHHHHHHHHHHHHc
Q 048269          180 YGWLIKGYCDVGDLIEASKIWNLMTDEGF-EPS----IDVVDKMIETFFKINK-------------DDEAMKVFQMMRVK  241 (465)
Q Consensus       180 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~----~~~~~~li~~~~~~g~-------------~~~A~~~~~~m~~~  241 (465)
                      +..+...|...|++++|...+++..+..- .++    ..++..+...+...|+             .+++.+.       
T Consensus        86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-------  158 (338)
T 3ro2_A           86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNA-------  158 (338)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHH-------
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHH-------
Confidence            45555555555555555555555443100 001    2234444444444444             0000000       


Q ss_pred             CCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC-----
Q 048269          242 RMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKR----GIE-ADNLTLSSIIYGLLARGRLREAYKVVEEIEK-----  311 (465)
Q Consensus       242 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----  311 (465)
                                            +++|...+++....    +.. .....+..+...+...|++++|...+++..+     
T Consensus       159 ----------------------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~  216 (338)
T 3ro2_A          159 ----------------------LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF  216 (338)
T ss_dssp             ----------------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred             ----------------------HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence                                  44444444433221    100 1123444555556666666666666665543     


Q ss_pred             CC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcC
Q 048269          312 PD----ISLYHGLIKGLLRLRRAREATQVFREMIKRGC-EPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAG  386 (465)
Q Consensus       312 ~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g  386 (465)
                      ++    ...+..+...+...|++++|...+++..+... ..+....                   ..++..+...|...|
T Consensus       217 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------------------~~~~~~la~~~~~~g  277 (338)
T 3ro2_A          217 GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE-------------------AQSCYSLGNTYTLLQ  277 (338)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH-------------------HHHHHHHHHHHHHTT
T ss_pred             CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHH-------------------HHHHHHHHHHHHHhc
Confidence            11    22566677777788888888888877764310 1111110                   123445667778889


Q ss_pred             CHHHHHHHHHHHHhC----CCCC-CHhhHHHHHHHHhhccchHHHHHHHHHHHHc
Q 048269          387 KSLDAAKYVERVMNR----GVEV-PRFDYNKFLHYYSNEEGVVMFEEVGKKLREV  436 (465)
Q Consensus       387 ~~~~A~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  436 (465)
                      ++++|.+.++++.+.    +-.+ ...++..+...+.+.|++++|...+++..+.
T Consensus       278 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  332 (338)
T 3ro2_A          278 DYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI  332 (338)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            999999988887652    1111 1336777888888899999999999888765

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.51  E-value=1.6e-11  Score=116.23  Aligned_cols=334  Identities=10%  Similarity=-0.038  Sum_probs=222.8

Q ss_pred             ChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcC-----ChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHH
Q 048269           52 SWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSR-----NIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKK  126 (465)
Q Consensus        52 ~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  126 (465)
                      +.+.|+..|+.+ ...     ++..+..+...+...+     ++++|...|++..+.|.+.  .+..+...|...+..+.
T Consensus        53 d~~~A~~~~~~A-~~~-----~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~--A~~~Lg~~y~~~~~~~~  124 (452)
T 3e4b_A           53 QIKQAEATYRAA-ADT-----SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGN--TLIPLAMLYLQYPHSFP  124 (452)
T ss_dssp             ------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSS--CHHHHHHHHHHCGGGCT
T ss_pred             CHHHHHHHHHHH-HhC-----CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHhCCCCCC
Confidence            337888888887 211     6667777777555555     7789999999998887655  56677777766655433


Q ss_pred             ---HHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHH----HHHHHhhcCCCCCHHhHHHHHHHHHhcC---CHHHH
Q 048269          127 ---MVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAK----YLILKLSEWIKPNEIAYGWLIKGYCDVG---DLIEA  196 (465)
Q Consensus       127 ---a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~----~~~~~m~~~~~~~~~~~~~li~~~~~~g---~~~~a  196 (465)
                         +.+.+......|   +...+..+...|...+.++++.    .++.....   .++..+..|...|...|   +.++|
T Consensus       125 ~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~---~~~~a~~~Lg~~~~~~g~~~~~~~A  198 (452)
T 3e4b_A          125 NVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALN---TTDICYVELATVYQKKQQPEQQAEL  198 (452)
T ss_dssp             TCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTT---TCTTHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHc---CCHHHHHHHHHHHHHcCCcccHHHH
Confidence               444555544444   3455666777777777554444    44444433   33348888888999999   99999


Q ss_pred             HHHHHHHHHCCCCCcHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCCCCCcchHHHHHHH-H--HhcCChHHHHH
Q 048269          197 SKIWNLMTDEGFEPSIDVVDKMIETFFKI----NKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDW-M--CKRGKISQAYT  269 (465)
Q Consensus       197 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~-~--~~~~~~~~a~~  269 (465)
                      ++.|+...+.| .++...+..+...|...    +++++|.+.|+... .    .+...+..+... +  ...+++++|..
T Consensus       199 ~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~----g~~~a~~~Lg~~~~~~~~~~d~~~A~~  272 (452)
T 3e4b_A          199 LKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P----GYPASWVSLAQLLYDFPELGDVEQMMK  272 (452)
T ss_dssp             HHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G----GSTHHHHHHHHHHHHSGGGCCHHHHHH
T ss_pred             HHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C----CCHHHHHHHHHHHHhCCCCCCHHHHHH
Confidence            99999999887 45666667777777665    78999999999986 3    266677777776 4  46889999999


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHhcCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHH
Q 048269          270 MLEEMFKRGIEADNLTLSSIIYGLLARG-----RLREAYKVVEEIEKPDISLYHGLIKGLLR----LRRAREATQVFREM  340 (465)
Q Consensus       270 ~~~~m~~~~~~~~~~~~~~li~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m  340 (465)
                      +|++..+.|   +...+..+...|. .|     ++++|...|++....+...+..|...|..    ..++++|...|++.
T Consensus       273 ~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A  348 (452)
T 3e4b_A          273 YLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAVGREVAADYYLGQIYRRGYLGKVYPQKALDHLLTA  348 (452)
T ss_dssp             HHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTTTTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHH
T ss_pred             HHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHH
Confidence            999998877   6677777777777 55     99999999998885556667777777766    34899999999999


Q ss_pred             HHcCCCCCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHH----hcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 048269          341 IKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLV----KAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHY  416 (465)
Q Consensus       341 ~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~  416 (465)
                      .+.|. |+...  .                       |...|.    ...+.++|..+|+...+.|. ++.......+..
T Consensus       349 a~~g~-~~A~~--~-----------------------Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~-~~a~~~l~~l~~  401 (452)
T 3e4b_A          349 ARNGQ-NSADF--A-----------------------IAQLFSQGKGTKPDPLNAYVFSQLAKAQDT-PEANDLATQLEA  401 (452)
T ss_dssp             HTTTC-TTHHH--H-----------------------HHHHHHSCTTBCCCHHHHHHHHHHHHTTCC-HHHHHHHHHHHT
T ss_pred             HhhCh-HHHHH--H-----------------------HHHHHHhCCCCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHH
Confidence            87764 22211  1                       222222    35689999999999988763 333333333344


Q ss_pred             HhhccchHHHHHHHHHHHHc
Q 048269          417 YSNEEGVVMFEEVGKKLREV  436 (465)
Q Consensus       417 ~~~~g~~~~a~~~~~~~~~~  436 (465)
                      ....++.++|..+.++..+.
T Consensus       402 ~~~~~~~~~a~~~~~~~~~~  421 (452)
T 3e4b_A          402 PLTPAQRAEGQRLVQQELAA  421 (452)
T ss_dssp             TCCHHHHHHHHHHHHHHHHH
T ss_pred             hCCHHHHHHHHHHHHHHHHh
Confidence            44557788888888887765

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.50  E-value=1.3e-12  Score=124.45  Aligned_cols=213  Identities=8%  Similarity=-0.041  Sum_probs=101.1

Q ss_pred             hhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCH-HHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 048269           90 IDLFWETLQEMGRRRLVNDKTFKIALMTLAEVREL-KKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILK  168 (465)
Q Consensus        90 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~  168 (465)
                      +++++..++........+...+..+...+...|++ ++|++.|++..+.. +.+...|..+..+|...|++++|++.|++
T Consensus        84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~  162 (474)
T 4abn_A           84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSG  162 (474)
T ss_dssp             HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            34444444444433333444444555555555555 55555555544432 22344455555555555555555555555


Q ss_pred             hhcCCCCCHHhHHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhc--------CCHHHH
Q 048269          169 LSEWIKPNEIAYGWLIKGYCDV---------GDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKI--------NKDDEA  231 (465)
Q Consensus       169 m~~~~~~~~~~~~~li~~~~~~---------g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~--------g~~~~A  231 (465)
                      ...- .|+...+..+...+...         |++++|+..|++..+.. +-+...|..+..+|...        |++++|
T Consensus       163 al~~-~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A  240 (474)
T 4abn_A          163 ALTH-CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQA  240 (474)
T ss_dssp             HHTT-CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHhh-CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence            4411 23344444455555554         55555555555554432 12344455555555544        555555


Q ss_pred             HHHHHHHHHcCCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048269          232 MKVFQMMRVKRMDD---LGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEE  308 (465)
Q Consensus       232 ~~~~~~m~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~  308 (465)
                      .+.|++..+.  .|   .+...|..+..+|...|++++|...|++..+... -+...+..+..++...|++++|...+..
T Consensus       241 ~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~a~~~l~~~~~~lg~~~eAi~~~~~  317 (474)
T 4abn_A          241 LSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP-AWPEPQQREQQLLEFLSRLTSLLESKGK  317 (474)
T ss_dssp             HHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            5555555443  22   2444555555555555555555555555544321 1334444455555555555555544433

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.49  E-value=8e-12  Score=118.33  Aligned_cols=338  Identities=10%  Similarity=-0.051  Sum_probs=199.2

Q ss_pred             ChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCCh---hHHHHHHHHHhhCCCCChHHHHHHHHHHHhcC-----C
Q 048269           52 SWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNI---DLFWETLQEMGRRRLVNDKTFKIALMTLAEVR-----E  123 (465)
Q Consensus        52 ~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~  123 (465)
                      +++.|+..|..+..  .|   ++..+..+...|...|+.   ++|...|++..+.   ++..+..+...+...+     +
T Consensus        18 ~~~~A~~~~~~aa~--~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~~~~~~~~~   89 (452)
T 3e4b_A           18 DTVTAQQNYQQLAE--LG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAAKPGATEAE   89 (452)
T ss_dssp             HHHHHHHHHHHHHH--HT---CCTGGGTCC-------------------------------CHHHHHHHHHTC--CCHHH
T ss_pred             CHHHHHHHHHHHHH--CC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHhCCCCCCcC
Confidence            67788888888632  23   455666677777777777   7888888877755   4445666666454444     6


Q ss_pred             HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHH---HHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHH
Q 048269          124 LKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEA---KYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIW  200 (465)
Q Consensus       124 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a---~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~  200 (465)
                      +++|+..|+...+.|. ++  .+..|...|...+..+++   .+.+.....  ..+...+..|...|...+.++.+....
T Consensus        90 ~~~A~~~~~~Aa~~g~-~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~--~g~~~a~~~Lg~~y~~~~~~~~~~~~a  164 (452)
T 3e4b_A           90 HHEAESLLKKAFANGE-GN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQA--AGYPEAGLAQVLLYRTQGTYDQHLDDV  164 (452)
T ss_dssp             HHHHHHHHHHHHHTTC-SS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHH--HTCTTHHHHHHHHHHHHTCGGGGHHHH
T ss_pred             HHHHHHHHHHHHHCCC-HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcccCHHHH
Confidence            7788888888887662 22  566666677665554433   333333331  123456667777777777554444433


Q ss_pred             HHHHHCCCCCcHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhc----CChHHHHHHHHH
Q 048269          201 NLMTDEGFEPSIDVVDKMIETFFKIN---KDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKR----GKISQAYTMLEE  273 (465)
Q Consensus       201 ~~m~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~----~~~~~a~~~~~~  273 (465)
                      ..+.+.-...+...+..|...|.+.|   +.++|++.|+...+.|..  +...+..+...|...    +++++|..+|++
T Consensus       165 ~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~--~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~  242 (452)
T 3e4b_A          165 ERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV--TAQRVDSVARVLGDATLGTPDEKTAQALLEK  242 (452)
T ss_dssp             HHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS--CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHH
Confidence            22222111223337777788888888   788888888888776532  444445666666554    688888888888


Q ss_pred             HHHCCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHhcC-CCHhhHHHHHHHHHhcC-----CHHHHHHHHHHHHHcC
Q 048269          274 MFKRGIEADNLTLSSIIYG-L--LARGRLREAYKVVEEIEK-PDISLYHGLIKGLLRLR-----RAREATQVFREMIKRG  344 (465)
Q Consensus       274 m~~~~~~~~~~~~~~li~~-~--~~~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~~-----~~~~a~~~~~~m~~~~  344 (465)
                      .. .|   ++..+..+... |  ...++.++|...|++..+ .+...+..|...|. .|     ++++|...|++.. .|
T Consensus       243 aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g  316 (452)
T 3e4b_A          243 IA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR  316 (452)
T ss_dssp             HG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT
T ss_pred             Hc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC
Confidence            77 33   44555556555 3  457888888888887766 56667777777776 44     8888888888765 22


Q ss_pred             CCCCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhh-
Q 048269          345 CEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVK----AGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSN-  419 (465)
Q Consensus       345 ~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~-  419 (465)
                         +....                       ..|...|..    ..++++|.++|++..+.|.   ......|...|.. 
T Consensus       317 ---~~~A~-----------------------~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G  367 (452)
T 3e4b_A          317 ---EVAAD-----------------------YYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQG  367 (452)
T ss_dssp             ---CHHHH-----------------------HHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSC
T ss_pred             ---CHHHH-----------------------HHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhC
Confidence               22222                       223333343    4599999999999998663   3344555555654 


Q ss_pred             ---ccchHHHHHHHHHHHHcCCC
Q 048269          420 ---EEGVVMFEEVGKKLREVGLA  439 (465)
Q Consensus       420 ---~g~~~~a~~~~~~~~~~g~~  439 (465)
                         ..+.++|...+++..+.|..
T Consensus       368 ~g~~~d~~~A~~~~~~A~~~g~~  390 (452)
T 3e4b_A          368 KGTKPDPLNAYVFSQLAKAQDTP  390 (452)
T ss_dssp             TTBCCCHHHHHHHHHHHHTTCCH
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCH
Confidence               46899999999999988854

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.48  E-value=1.2e-11  Score=101.73  Aligned_cols=167  Identities=11%  Similarity=0.023  Sum_probs=132.5

Q ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHH
Q 048269          107 NDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKG  186 (465)
Q Consensus       107 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~  186 (465)
                      +..+|..+...+.+.|++++|++.|++..+.. +-+..++..+..+|.+.|++++|...+.......+.+...+..+...
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~   82 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA   82 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence            45678888888888888888888888888765 55677888888888888888888888888774446667777778888


Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHH
Q 048269          187 YCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQ  266 (465)
Q Consensus       187 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~  266 (465)
                      +...++++.+...+....+.. +-+...+..+..++.+.|++++|++.|++..+.  .|.+..+|..+..+|.+.|++++
T Consensus        83 ~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~lg~~~~~~g~~~~  159 (184)
T 3vtx_A           83 NFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI--KPGFIRAYQSIGLAYEGKGLRDE  159 (184)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh--cchhhhHHHHHHHHHHHCCCHHH
Confidence            888888888888888877653 335677788888888888888888888888765  45467788888888888888888


Q ss_pred             HHHHHHHHHHC
Q 048269          267 AYTMLEEMFKR  277 (465)
Q Consensus       267 a~~~~~~m~~~  277 (465)
                      |...|++..+.
T Consensus       160 A~~~~~~al~~  170 (184)
T 3vtx_A          160 AVKYFKKALEK  170 (184)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHhC
Confidence            88888887765

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.45  E-value=6.6e-13  Score=119.21  Aligned_cols=241  Identities=10%  Similarity=-0.008  Sum_probs=117.5

Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHhhC--------CCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhC------C
Q 048269           73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRR--------RLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDC------G  138 (465)
Q Consensus        73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~  138 (465)
                      +..++..+...+...|++++|..+++++.+.        ......++..+...+...|++++|+..++...+.      +
T Consensus        26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  105 (311)
T 3nf1_A           26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK  105 (311)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence            4566777777777777777777777777652        2223456666677777777777777777666543      1


Q ss_pred             C-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhc-------CC-CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC---
Q 048269          139 C-EYSLEMLNKVVKTLCQRKLVVEAKYLILKLSE-------WI-KPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDE---  206 (465)
Q Consensus       139 ~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~-------~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---  206 (465)
                      - +....++..+...+...|++++|...+++...       +. +....++..+...+...|++++|..+|+++.+.   
T Consensus       106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~  185 (311)
T 3nf1_A          106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT  185 (311)
T ss_dssp             TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            1 22234455566666666666666666665541       11 112333444555555555555555555554432   


Q ss_pred             ---CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 048269          207 ---GFEP-SIDVVDKMIETFFKINKDDEAMKVFQMMRVK-------RMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMF  275 (465)
Q Consensus       207 ---g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  275 (465)
                         +..| ...++..+..++...|++++|.+.++++...       ...+.....+. .                     
T Consensus       186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~-~---------------------  243 (311)
T 3nf1_A          186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWM-H---------------------  243 (311)
T ss_dssp             TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHH-H---------------------
T ss_pred             HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH-H---------------------
Confidence               1111 1233444444455555555555555444432       01110000000 0                     


Q ss_pred             HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048269          276 KRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK---PDISLYHGLIKGLLRLRRAREATQVFREMIK  342 (465)
Q Consensus       276 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  342 (465)
                             ...+..+...+...+.+.++...+.....   .+..++..+...|.+.|++++|.+.|++..+
T Consensus       244 -------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  306 (311)
T 3nf1_A          244 -------AEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR  306 (311)
T ss_dssp             -------HHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             -------HHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence                   01111112222333444444444544443   3345566677777777888888877777654

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.45  E-value=1.8e-12  Score=116.34  Aligned_cols=246  Identities=11%  Similarity=0.008  Sum_probs=114.9

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHhhc--------CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC------CC
Q 048269          143 LEMLNKVVKTLCQRKLVVEAKYLILKLSE--------WIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDE------GF  208 (465)
Q Consensus       143 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~--------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~  208 (465)
                      ..++..+...+...|++++|..+++++..        ..+....++..+...|...|++++|...+++..+.      +-
T Consensus        27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  106 (311)
T 3nf1_A           27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD  106 (311)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence            34455555556666666666666655541        22223344555555555555555555555555432      11


Q ss_pred             -CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHC----
Q 048269          209 -EPSIDVVDKMIETFFKINKDDEAMKVFQMMRVK------RMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKR----  277 (465)
Q Consensus       209 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----  277 (465)
                       +....++..+...+...|++++|.+.+++..+.      +..|....++..+...+...|++++|..+++++.+.    
T Consensus       107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~  186 (311)
T 3nf1_A          107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK  186 (311)
T ss_dssp             CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred             ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence             112334455555555555555555555554432      111212233444444444555555555554444332    


Q ss_pred             --CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCCC
Q 048269          278 --GIEADNLTLSSIIYGLLARGRLREAYKVVEEIEKPDISLYHGLIKGLLRLRRAREATQVFREMIKR-------GCEPT  348 (465)
Q Consensus       278 --~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-------~~~p~  348 (465)
                        +..|                              .....+..+...|...|++++|.+.++++.+.       ...+.
T Consensus       187 ~~~~~~------------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  236 (311)
T 3nf1_A          187 LGPDDP------------------------------NVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDE  236 (311)
T ss_dssp             SCTTCH------------------------------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred             hCCCCH------------------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence              0000                              11223555566666666677666666666542       11111


Q ss_pred             HHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHhhccchHHHH
Q 048269          349 MHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEV-PRFDYNKFLHYYSNEEGVVMFE  427 (465)
Q Consensus       349 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~  427 (465)
                      ..........                +..+...+...+.+.+|...+++....  .| +..++..+...|.+.|++++|.
T Consensus       237 ~~~~~~~~~~----------------~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~  298 (311)
T 3nf1_A          237 NKPIWMHAEE----------------REECKGKQKDGTSFGEYGGWYKACKVD--SPTVTTTLKNLGALYRRQGKFEAAE  298 (311)
T ss_dssp             -CCHHHHHHH----------------HHHC-------CCSCCCC-----------CHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             hHHHHHHHHH----------------HHHhcCchhhHHHHHHHHHHHhhcCCC--CchHHHHHHHHHHHHHHCCCHHHHH
Confidence            1111111111                222334445666777777777776642  33 3447778888888888888888


Q ss_pred             HHHHHHHHc
Q 048269          428 EVGKKLREV  436 (465)
Q Consensus       428 ~~~~~~~~~  436 (465)
                      .++++..+.
T Consensus       299 ~~~~~al~l  307 (311)
T 3nf1_A          299 TLEEAAMRS  307 (311)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888877654

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.45  E-value=3.8e-12  Score=121.28  Aligned_cols=213  Identities=12%  Similarity=-0.031  Sum_probs=184.2

Q ss_pred             CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCH-HHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 048269          123 ELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLV-VEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWN  201 (465)
Q Consensus       123 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~  201 (465)
                      .+++++..++...... +.+...+..+..++...|++ ++|++.|++.....+.+..+|..+...|...|++++|...|+
T Consensus        83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~  161 (474)
T 4abn_A           83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS  161 (474)
T ss_dssp             HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            4667777887766643 45788899999999999999 999999999884446678999999999999999999999999


Q ss_pred             HHHHCCCCCcHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhc--------CCh
Q 048269          202 LMTDEGFEPSIDVVDKMIETFFKI---------NKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKR--------GKI  264 (465)
Q Consensus       202 ~m~~~g~~~~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~--------~~~  264 (465)
                      ...+.  .|+...+..+...+...         |++++|.+.|++..+.  .|.+...|..+..+|...        |++
T Consensus       162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~  237 (474)
T 4abn_A          162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKIS  237 (474)
T ss_dssp             HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred             HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence            99987  47788999999999999         9999999999999876  565788999999999998        999


Q ss_pred             HHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC---CCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 048269          265 SQAYTMLEEMFKRGIE--ADNLTLSSIIYGLLARGRLREAYKVVEEIEK---PDISLYHGLIKGLLRLRRAREATQVFRE  339 (465)
Q Consensus       265 ~~a~~~~~~m~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~  339 (465)
                      ++|...|++..+....  -+...+..+..+|...|++++|...|++..+   .+...+..+...+...|++++|++.+.+
T Consensus       238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~  317 (474)
T 4abn_A          238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK  317 (474)
T ss_dssp             HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9999999999886321  3788899999999999999999999999877   4566788888889999999999876654


Q ss_pred             H
Q 048269          340 M  340 (465)
Q Consensus       340 m  340 (465)
                      +
T Consensus       318 ~  318 (474)
T 4abn_A          318 T  318 (474)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.43  E-value=3e-11  Score=112.05  Aligned_cols=293  Identities=9%  Similarity=-0.021  Sum_probs=207.5

Q ss_pred             CChhHHHHHHHHHhhcCCCCCCCH--HhHHHHHHHH--HhcCChhHHH-----------HHHHHHhhCCCCC-----hHH
Q 048269           51 LSWRPVYLFFQYTQKAQPCFAHNS--ITFNRMVDII--GKSRNIDLFW-----------ETLQEMGRRRLVN-----DKT  110 (465)
Q Consensus        51 ~~~~~a~~~f~~~~~~~~~~~~~~--~~~~~l~~~~--~~~g~~~~a~-----------~~~~~~~~~~~~~-----~~~  110 (465)
                      .+.+.|..+++.+...-.....|.  ..|..++..-  .-.++++.+.           +.++.+.....+.     ...
T Consensus        26 ~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l~~~~  105 (383)
T 3ulq_A           26 FSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLEYYF  105 (383)
T ss_dssp             TCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHHHHHH
Confidence            377888888888733333333343  3334443321  1223333333           5666554322111     112


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHhhhC----CCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHhh---cCCC----CCHH
Q 048269          111 FKIALMTLAEVRELKKMVNFFHIMNDC----GCEY-SLEMLNKVVKTLCQRKLVVEAKYLILKLS---EWIK----PNEI  178 (465)
Q Consensus       111 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~---~~~~----~~~~  178 (465)
                      +......+...|++++|+..|+...+.    +-.+ ...++..+..+|...|++++|...+++..   ....    ....
T Consensus       106 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  185 (383)
T 3ulq_A          106 NFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQ  185 (383)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHH
Confidence            333667788999999999999998763    2112 34678889999999999999999999976   2221    1245


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCCcc
Q 048269          179 AYGWLIKGYCDVGDLIEASKIWNLMTDE----GFEP-SIDVVDKMIETFFKINKDDEAMKVFQMMRVK----RMDDLGLS  249 (465)
Q Consensus       179 ~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~~~~  249 (465)
                      +++.+...|...|++++|...|++..+.    +-.+ ...++..+..+|...|++++|.+.+++..+.    +..|....
T Consensus       186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  265 (383)
T 3ulq_A          186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQ  265 (383)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHH
Confidence            7888899999999999999999988753    1111 2347888999999999999999999988762    22243567


Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHhcC--CCHhhHHHH
Q 048269          250 TYRIVIDWMCKRGKISQAYTMLEEMFKR----GIEADNLTLSSIIYGLLARGR---LREAYKVVEEIEK--PDISLYHGL  320 (465)
Q Consensus       250 ~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~--~~~~~~~~l  320 (465)
                      ++..+...|.+.|++++|...+++..+.    +.+.....+..+...|...|+   +++|..++++...  .....+..+
T Consensus       266 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~l  345 (383)
T 3ulq_A          266 AYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDV  345 (383)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence            7899999999999999999999987653    111122335667778888898   8899999988865  334567778


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHc
Q 048269          321 IKGLLRLRRAREATQVFREMIKR  343 (465)
Q Consensus       321 i~~~~~~~~~~~a~~~~~~m~~~  343 (465)
                      ...|...|++++|...|++..+.
T Consensus       346 a~~y~~~g~~~~A~~~~~~al~~  368 (383)
T 3ulq_A          346 AKYYHERKNFQKASAYFLKVEQV  368 (383)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHH
Confidence            89999999999999999998753

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.42  E-value=5.1e-11  Score=110.52  Aligned_cols=290  Identities=9%  Similarity=-0.035  Sum_probs=203.2

Q ss_pred             HHhcCChhHHHHHHHHHhhCC--C-CChH--HHHHHHH--HHHhcCCHHHHH-----------HHHHHhhhCCCCCCHHH
Q 048269           84 IGKSRNIDLFWETLQEMGRRR--L-VNDK--TFKIALM--TLAEVRELKKMV-----------NFFHIMNDCGCEYSLEM  145 (465)
Q Consensus        84 ~~~~g~~~~a~~~~~~~~~~~--~-~~~~--~~~~l~~--~~~~~~~~~~a~-----------~~~~~~~~~~~~~~~~~  145 (465)
                      +.+.+++++|..+++++.+.-  . .+..  .|..++.  .....+.++.+.           +.++.+....  .+...
T Consensus        22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~~   99 (383)
T 3ulq_A           22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLTG   99 (383)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHHH
T ss_pred             HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCchh
Confidence            456899999999999886532  1 2332  2333322  222233444444           6666665422  12121


Q ss_pred             ------HHHHHHHHHcCCCHHHHHHHHHHhhc---CCCC---CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-
Q 048269          146 ------LNKVVKTLCQRKLVVEAKYLILKLSE---WIKP---NEIAYGWLIKGYCDVGDLIEASKIWNLMTDE----GF-  208 (465)
Q Consensus       146 ------~~~ll~~~~~~~~~~~a~~~~~~m~~---~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-  208 (465)
                            +......+...|++++|+..|++...   ..+.   ...++..+...|...|+++.|...+.+..+.    +- 
T Consensus       100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~  179 (383)
T 3ulq_A          100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY  179 (383)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence                  22255677889999999999999872   1222   3467889999999999999999999988763    11 


Q ss_pred             -CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHC----CC
Q 048269          209 -EPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRM----DDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKR----GI  279 (465)
Q Consensus       209 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~  279 (465)
                       .....+++.+...|...|++++|.+.|++..+...    .+....++..+..+|...|++++|...+++..+.    +.
T Consensus       180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~  259 (383)
T 3ulq_A          180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI  259 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence             11246788899999999999999999988765411    1111247888999999999999999999988762    23


Q ss_pred             -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC-----CCH---hhHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCC
Q 048269          280 -EADNLTLSSIIYGLLARGRLREAYKVVEEIEK-----PDI---SLYHGLIKGLLRLRR---AREATQVFREMIKRGCEP  347 (465)
Q Consensus       280 -~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~---~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~p  347 (465)
                       +....++..+...|.+.|++++|...+++...     .+.   ..+..+...|...|+   +++|+.++++.   +..|
T Consensus       260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~  336 (383)
T 3ulq_A          260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYA  336 (383)
T ss_dssp             GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHH
T ss_pred             chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHH
Confidence             33467788899999999999999999998876     232   224566777888888   77777777765   3223


Q ss_pred             CHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048269          348 TMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMN  400 (465)
Q Consensus       348 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  400 (465)
                      +...                      .+..+...|...|++++|.+.+++..+
T Consensus       337 ~~~~----------------------~~~~la~~y~~~g~~~~A~~~~~~al~  367 (383)
T 3ulq_A          337 DLED----------------------FAIDVAKYYHERKNFQKASAYFLKVEQ  367 (383)
T ss_dssp             HHHH----------------------HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHH----------------------HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            2221                      234466678999999999999999876

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.41  E-value=2.9e-11  Score=99.26  Aligned_cols=164  Identities=10%  Similarity=-0.014  Sum_probs=95.0

Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 048269           75 ITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLC  154 (465)
Q Consensus        75 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~  154 (465)
                      ..|..+...+...|++++|...++++.+..+.+..++..+...+...|++++|...++.+.+.. +.+...+..+...+.
T Consensus         9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~   87 (186)
T 3as5_A            9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV   87 (186)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence            3455556666666666666666666665555555566666666666666666666666665543 334555555566666


Q ss_pred             cCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 048269          155 QRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKV  234 (465)
Q Consensus       155 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~  234 (465)
                      ..|++++|.+.++++....+.+...+..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|.+.
T Consensus        88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~  166 (186)
T 3as5_A           88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPH  166 (186)
T ss_dssp             HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHH
Confidence            66666666666666553334455555555555666666666666665555442 22345555555555555566655555


Q ss_pred             HHHHHH
Q 048269          235 FQMMRV  240 (465)
Q Consensus       235 ~~~m~~  240 (465)
                      ++...+
T Consensus       167 ~~~~~~  172 (186)
T 3as5_A          167 FKKANE  172 (186)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555543

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.41  E-value=4.6e-09  Score=103.07  Aligned_cols=375  Identities=9%  Similarity=0.037  Sum_probs=218.4

Q ss_pred             HHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCC---HHHHHHHHH
Q 048269           56 VYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRE---LKKMVNFFH  132 (465)
Q Consensus        56 a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~  132 (465)
                      ....|+..+...+.   |...|..++..+.+.+.++.+..+|+.+...-+.+...|...+..-.+.++   ++.+..+|+
T Consensus        51 ~i~~lE~~l~~np~---d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfe  127 (679)
T 4e6h_A           51 VIGKLNDMIEEQPT---DIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLA  127 (679)
T ss_dssp             HHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHCcC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHH
Confidence            34444444455544   777777777777777777777777777776666666666666666666666   777777777


Q ss_pred             HhhhCC-CCCCHHHHHHHHHHHHcCCCH--------HHHHHHHHHhh--cCC-CC-CHHhHHHHHHHHH---------hc
Q 048269          133 IMNDCG-CEYSLEMLNKVVKTLCQRKLV--------VEAKYLILKLS--EWI-KP-NEIAYGWLIKGYC---------DV  190 (465)
Q Consensus       133 ~~~~~~-~~~~~~~~~~ll~~~~~~~~~--------~~a~~~~~~m~--~~~-~~-~~~~~~~li~~~~---------~~  190 (465)
                      +..... .+|++..|...+....+.++.        +.+.++|+...  -|. .+ +...|...+....         ..
T Consensus       128 Ral~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq  207 (679)
T 4e6h_A          128 RCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQ  207 (679)
T ss_dssp             HHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHH
T ss_pred             HHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHH
Confidence            766642 126666666655544333322        23345666544  333 33 3445555554332         12


Q ss_pred             CCHHHHHHHHHHHHHCCCCCcHHHH-------------------------------------------------------
Q 048269          191 GDLIEASKIWNLMTDEGFEPSIDVV-------------------------------------------------------  215 (465)
Q Consensus       191 g~~~~a~~~~~~m~~~g~~~~~~~~-------------------------------------------------------  215 (465)
                      ++++.+.++|+.........-..+|                                                       
T Consensus       208 ~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~  287 (679)
T 4e6h_A          208 QRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQAT  287 (679)
T ss_dssp             HHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCC
T ss_pred             hHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccch
Confidence            3345566666666542111111222                                                       


Q ss_pred             ------------------HHHHHHHHhcC-------CHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHH-H
Q 048269          216 ------------------DKMIETFFKIN-------KDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAY-T  269 (465)
Q Consensus       216 ------------------~~li~~~~~~g-------~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~-~  269 (465)
                                        ...+..--..+       ..+.+..+|++....  .|.....|-..+.-+...|+.+.|. .
T Consensus       288 ~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~--~p~~~~lW~~ya~~~~~~~~~~~a~r~  365 (679)
T 4e6h_A          288 ESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH--VCFAPEIWFNMANYQGEKNTDSTVITK  365 (679)
T ss_dssp             TTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH--TTTCHHHHHHHHHHHHHHSCCTTHHHH
T ss_pred             hccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHhcCcHHHHHHH
Confidence                              11111111110       011223334444433  2224445555555566677777886 8


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC-------------CC------------HhhHHHHHHHH
Q 048269          270 MLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK-------------PD------------ISLYHGLIKGL  324 (465)
Q Consensus       270 ~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-------------~~------------~~~~~~li~~~  324 (465)
                      +|+..... ++.+...+...+....+.|+++.|..+|+.+..             |+            ..+|...+...
T Consensus       366 il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~e  444 (679)
T 4e6h_A          366 YLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTM  444 (679)
T ss_dssp             HHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHH
Confidence            88888764 344566667777788888899999988887764             21            23566667777


Q ss_pred             HhcCCHHHHHHHHHHHHHc-C-CCCCHHHHHHHHHHhhccc-C---------CCCCCCchHHHHHHHHHHHhcCCHHHHH
Q 048269          325 LRLRRAREATQVFREMIKR-G-CEPTMHTYIMLLQGHLGKR-G---------RKGPDPLVNFDTIFVGGLVKAGKSLDAA  392 (465)
Q Consensus       325 ~~~~~~~~a~~~~~~m~~~-~-~~p~~~~~~~ll~~~~~~~-~---------~~~~~~~~~~~~~li~~~~~~g~~~~A~  392 (465)
                      .+.|+.+.|..+|.+.++. + ..+........+....... +         -..++.+...|...+......|+.+.|.
T Consensus       445 rR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR  524 (679)
T 4e6h_A          445 KRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVK  524 (679)
T ss_dssp             HHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHH
Confidence            7788889999999888765 2 2222333333333222111 1         1123445667778888788888888999


Q ss_pred             HHHHHHHhCCCCC--CHhhHHHHHHHHhhccchHHHHHHHHHHHHc
Q 048269          393 KYVERVMNRGVEV--PRFDYNKFLHYYSNEEGVVMFEEVGKKLREV  436 (465)
Q Consensus       393 ~~~~~m~~~~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  436 (465)
                      .+|++.......+  ....|..++.--.+.|+.+.+..+.+++.+.
T Consensus       525 ~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~  570 (679)
T 4e6h_A          525 SLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK  570 (679)
T ss_dssp             HHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            9998888643211  2347777777777788888888888888876

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.39  E-value=3.5e-10  Score=104.39  Aligned_cols=266  Identities=13%  Similarity=0.000  Sum_probs=184.5

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHhhCCCCC-h----HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-CCC----HHHH
Q 048269           77 FNRMVDIIGKSRNIDLFWETLQEMGRRRLVN-D----KTFKIALMTLAEVRELKKMVNFFHIMNDCGC-EYS----LEML  146 (465)
Q Consensus        77 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~  146 (465)
                      .......+...|++++|...+++.......+ .    .++..+...+...|++++|...+++...... ..+    ..++
T Consensus        17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~   96 (373)
T 1hz4_A           17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL   96 (373)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            3444556677899999999998877655422 2    2456667778888999999998888765210 112    2335


Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHhh-----cCCC--C-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----CcHHH
Q 048269          147 NKVVKTLCQRKLVVEAKYLILKLS-----EWIK--P-NEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFE----PSIDV  214 (465)
Q Consensus       147 ~~ll~~~~~~~~~~~a~~~~~~m~-----~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~----~~~~~  214 (465)
                      ..+...+...|++++|...+++..     .+..  | ....+..+...+...|++++|...+++..+..-.    ....+
T Consensus        97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  176 (373)
T 1hz4_A           97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC  176 (373)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence            667778888999999999988865     1221  2 3455667788888999999999999888763211    12456


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHH-----HHHHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHH
Q 048269          215 VDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYR-----IVIDWMCKRGKISQAYTMLEEMFKRGIEA---DNLTL  286 (465)
Q Consensus       215 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~-----~li~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~  286 (465)
                      +..+...+...|++++|...+++.......+.....+.     ..+..+...|++++|...+++.......+   ....+
T Consensus       177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  256 (373)
T 1hz4_A          177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW  256 (373)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence            77888888999999999999988765422221211222     23344778999999999998876543221   12245


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHhcC-----C---CH-hhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048269          287 SSIIYGLLARGRLREAYKVVEEIEK-----P---DI-SLYHGLIKGLLRLRRAREATQVFREMIK  342 (465)
Q Consensus       287 ~~li~~~~~~~~~~~a~~~~~~~~~-----~---~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~  342 (465)
                      ..+...+...|++++|...++....     .   +. ..+..+..++...|+.++|...+++...
T Consensus       257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~  321 (373)
T 1hz4_A          257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK  321 (373)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            6777888899999999999988765     1   11 2455567778889999999999988864

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.37  E-value=9.2e-11  Score=96.23  Aligned_cols=165  Identities=11%  Similarity=0.030  Sum_probs=113.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHH
Q 048269          109 KTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYC  188 (465)
Q Consensus       109 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~  188 (465)
                      ..+..+...+...|++++|+..|+.+.+.. +.+...+..+...+...|++++|...++++....+.+...+..+...+.
T Consensus         9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~   87 (186)
T 3as5_A            9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV   87 (186)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            355666677777777777777777776643 4456667777777777777777777777766333556667777777777


Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHH
Q 048269          189 DVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAY  268 (465)
Q Consensus       189 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~  268 (465)
                      ..|++++|.+.++.+.+.. +.+...+..+...+...|++++|.+.++.....  .|.+..++..+...+...|++++|.
T Consensus        88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~  164 (186)
T 3as5_A           88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGL--RPNEGKVHRAIAFSYEQMGRHEEAL  164 (186)
T ss_dssp             HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHcCCHHHHH
Confidence            7777777777777776653 335666677777777777777777777776655  2335566777777777777777777


Q ss_pred             HHHHHHHHC
Q 048269          269 TMLEEMFKR  277 (465)
Q Consensus       269 ~~~~~m~~~  277 (465)
                      ..+++..+.
T Consensus       165 ~~~~~~~~~  173 (186)
T 3as5_A          165 PHFKKANEL  173 (186)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHc
Confidence            777766543

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.35  E-value=2.4e-10  Score=105.75  Aligned_cols=305  Identities=10%  Similarity=-0.038  Sum_probs=201.5

Q ss_pred             CCCCHHhHHHHHHHH--HhcCChhHHHHHHHHHhhCC--C-CChH--HHHHHHHH--HHhcCCHHHHH---------HHH
Q 048269           70 FAHNSITFNRMVDII--GKSRNIDLFWETLQEMGRRR--L-VNDK--TFKIALMT--LAEVRELKKMV---------NFF  131 (465)
Q Consensus        70 ~~~~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~~~--~-~~~~--~~~~l~~~--~~~~~~~~~a~---------~~~  131 (465)
                      ..|+..+-+.|-..|  .+.+++++|..+++++.+..  . .+..  .|-.++..  ..-.+.+..+.         +.+
T Consensus         6 ~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l   85 (378)
T 3q15_A            6 AIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELL   85 (378)
T ss_dssp             CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHH
Confidence            345667777777777  78899999999998875532  1 2222  22333321  11112222222         555


Q ss_pred             HHhhhCCCCCCH-H---HHHHHHHHHHcCCCHHHHHHHHHHhhcC--CCC----CHHhHHHHHHHHHhcCCHHHHHHHHH
Q 048269          132 HIMNDCGCEYSL-E---MLNKVVKTLCQRKLVVEAKYLILKLSEW--IKP----NEIAYGWLIKGYCDVGDLIEASKIWN  201 (465)
Q Consensus       132 ~~~~~~~~~~~~-~---~~~~ll~~~~~~~~~~~a~~~~~~m~~~--~~~----~~~~~~~li~~~~~~g~~~~a~~~~~  201 (465)
                      +.+.....+.+. .   .+......+...|++++|+..|++...-  ..+    ...++..+...|...|+++.|...+.
T Consensus        86 ~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~  165 (378)
T 3q15_A           86 ETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHIL  165 (378)
T ss_dssp             HHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence            555432211111 1   1223445567889999999999997611  112    24578888899999999999999998


Q ss_pred             HHHHC----CC-CC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCCcchHHHHHHHHHhcCChHHHHHHH
Q 048269          202 LMTDE----GF-EP-SIDVVDKMIETFFKINKDDEAMKVFQMMRVK----RMDDLGLSTYRIVIDWMCKRGKISQAYTML  271 (465)
Q Consensus       202 ~m~~~----g~-~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~~~~~~~~li~~~~~~~~~~~a~~~~  271 (465)
                      +..+.    +- .+ ...+++.+..+|...|++++|.+.|++..+.    +..+....++..+..+|...|++++|...+
T Consensus       166 ~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~  245 (378)
T 3q15_A          166 QALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHF  245 (378)
T ss_dssp             HHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            87652    11 11 2567888899999999999999999887653    111112346778888999999999999999


Q ss_pred             HHHHH-----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC-----CC---HhhHHHHHHHHHhcCC---HHHHHH
Q 048269          272 EEMFK-----RGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK-----PD---ISLYHGLIKGLLRLRR---AREATQ  335 (465)
Q Consensus       272 ~~m~~-----~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~---~~~~~~li~~~~~~~~---~~~a~~  335 (465)
                      ++...     ... ....++..+...|.+.|++++|...+++...     .+   ...+..+...|...++   +++|+.
T Consensus       246 ~~al~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~  324 (378)
T 3q15_A          246 QKAAKVSREKVPD-LLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLS  324 (378)
T ss_dssp             HHHHHHHHHHCGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred             HHHHHHHHhhCCh-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            98876     432 2367788888999999999999999998765     12   2234555556666777   777777


Q ss_pred             HHHHHHHcCCCCCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048269          336 VFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMN  400 (465)
Q Consensus       336 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  400 (465)
                      .+++.   +..|+...                      .+..+...|...|++++|.+.|++..+
T Consensus       325 ~~~~~---~~~~~~~~----------------------~~~~la~~y~~~g~~~~A~~~~~~al~  364 (378)
T 3q15_A          325 YFEKK---NLHAYIEA----------------------CARSAAAVFESSCHFEQAAAFYRKVLK  364 (378)
T ss_dssp             HHHHT---TCHHHHHH----------------------HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHhC---CChhHHHH----------------------HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            77652   22222221                      133466778999999999999998864

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.34  E-value=1.9e-09  Score=99.48  Aligned_cols=271  Identities=11%  Similarity=-0.011  Sum_probs=191.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHH----HHHHHHHHHHcCCCHHHHHHHHHHhh--cCCCCC----HHhH
Q 048269          111 FKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLE----MLNKVVKTLCQRKLVVEAKYLILKLS--EWIKPN----EIAY  180 (465)
Q Consensus       111 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~m~--~~~~~~----~~~~  180 (465)
                      .......+...|++++|...+++........+..    +++.+...+...|++++|...+++..  .....+    ..++
T Consensus        17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~   96 (373)
T 1hz4_A           17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL   96 (373)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            4445566778999999999999987754222222    46667778888999999999999876  111122    2346


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHC----CCC--C-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CCcch
Q 048269          181 GWLIKGYCDVGDLIEASKIWNLMTDE----GFE--P-SIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDD---LGLST  250 (465)
Q Consensus       181 ~~li~~~~~~g~~~~a~~~~~~m~~~----g~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~---~~~~~  250 (465)
                      ..+...+...|++++|...+++..+.    +..  | ....+..+...+...|++++|.+.+++........   ....+
T Consensus        97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  176 (373)
T 1hz4_A           97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC  176 (373)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence            67788899999999999999988652    222  3 34566778889999999999999999987643221   01245


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHH----HHHHHHHhcCCHHHHHHHHHHhcCCC-------HhhH
Q 048269          251 YRIVIDWMCKRGKISQAYTMLEEMFKRGIEAD--NLTLS----SIIYGLLARGRLREAYKVVEEIEKPD-------ISLY  317 (465)
Q Consensus       251 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~----~li~~~~~~~~~~~a~~~~~~~~~~~-------~~~~  317 (465)
                      +..+...+...|++++|...+++.......++  .....    ..+..+...|+.++|...+++...+.       ...+
T Consensus       177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  256 (373)
T 1hz4_A          177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW  256 (373)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence            77788889999999999999998875321111  12111    23345779999999999999988722       2245


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcCCHHHHHHHHH
Q 048269          318 HGLIKGLLRLRRAREATQVFREMIKRGCE-PTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVE  396 (465)
Q Consensus       318 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~  396 (465)
                      ..+...+...|++++|...+++.....-. +.....   .                ..+..+...+...|+.++|...++
T Consensus       257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~---~----------------~~~~~la~~~~~~g~~~~A~~~l~  317 (373)
T 1hz4_A          257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDL---N----------------RNLLLLNQLYWQAGRKSDAQRVLL  317 (373)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH---H----------------HHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhH---H----------------HHHHHHHHHHHHhCCHHHHHHHHH
Confidence            66778899999999999999988643111 111100   0                122334566789999999999999


Q ss_pred             HHHh
Q 048269          397 RVMN  400 (465)
Q Consensus       397 ~m~~  400 (465)
                      +...
T Consensus       318 ~al~  321 (373)
T 1hz4_A          318 DALK  321 (373)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9875

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.33  E-value=6.3e-11  Score=117.56  Aligned_cols=166  Identities=10%  Similarity=-0.044  Sum_probs=149.1

Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 048269           73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKT  152 (465)
Q Consensus        73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~  152 (465)
                      +..+|+.+..++.+.|++++|++.|++..+.++.+..++..+...+.+.|++++|+..|++..+.. +-+...|+.+..+
T Consensus         8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~   86 (723)
T 4gyw_A            8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNT   86 (723)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence            578899999999999999999999999999888888999999999999999999999999999875 5568899999999


Q ss_pred             HHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 048269          153 LCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAM  232 (465)
Q Consensus       153 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~  232 (465)
                      |...|++++|++.|++...-.+-+..+|+.+..+|.+.|++++|++.|++..+.. +-+...+..+..++...|++++|.
T Consensus        87 l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A~  165 (723)
T 4gyw_A           87 LKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDYD  165 (723)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHHH
Confidence            9999999999999999884446678999999999999999999999999998863 235788999999999999999999


Q ss_pred             HHHHHHHH
Q 048269          233 KVFQMMRV  240 (465)
Q Consensus       233 ~~~~~m~~  240 (465)
                      +.+++..+
T Consensus       166 ~~~~kal~  173 (723)
T 4gyw_A          166 ERMKKLVS  173 (723)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88887654

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.33  E-value=2.6e-10  Score=97.36  Aligned_cols=195  Identities=12%  Similarity=0.037  Sum_probs=152.7

Q ss_pred             CCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCC-CChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 048269           72 HNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRL-VNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVV  150 (465)
Q Consensus        72 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll  150 (465)
                      .|+..+......+.+.|++++|+..|++..+.++ ++...+..+..++...|++++|+..|+...+.. +.+...+..+.
T Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~   83 (228)
T 4i17_A            5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS   83 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence            4678899999999999999999999999998887 777788889999999999999999999998865 44677888899


Q ss_pred             HHHHcCCCHHHHHHHHHHhhcCCCCCH-------HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCc---HHHHHHHHH
Q 048269          151 KTLCQRKLVVEAKYLILKLSEWIKPNE-------IAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPS---IDVVDKMIE  220 (465)
Q Consensus       151 ~~~~~~~~~~~a~~~~~~m~~~~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~li~  220 (465)
                      .++...|++++|+..+++.....+.+.       ..|..+...+...|++++|+..|+...+.  .|+   ...+..+..
T Consensus        84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~  161 (228)
T 4i17_A           84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGV  161 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHH
Confidence            999999999999999999884445555       56888888899999999999999999876  454   567777777


Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 048269          221 TFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRG  278 (465)
Q Consensus       221 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~  278 (465)
                      ++...|     ...++.+...+  +.+...|....  ....+.+++|...+++..+..
T Consensus       162 ~~~~~~-----~~~~~~a~~~~--~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~  210 (228)
T 4i17_A          162 LFYNNG-----ADVLRKATPLA--SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS  210 (228)
T ss_dssp             HHHHHH-----HHHHHHHGGGT--TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHH-----HHHHHHHHhcc--cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence            776544     34445554432  21333443333  334566889999999988763

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.32  E-value=6.8e-10  Score=102.67  Aligned_cols=292  Identities=11%  Similarity=0.006  Sum_probs=201.9

Q ss_pred             CChhHHHHHHHHHhhcCCCCCCC--HHhHHHHHHHH--HhcCChhHHH---------HHHHHHhhCCCC-C----hHHHH
Q 048269           51 LSWRPVYLFFQYTQKAQPCFAHN--SITFNRMVDII--GKSRNIDLFW---------ETLQEMGRRRLV-N----DKTFK  112 (465)
Q Consensus        51 ~~~~~a~~~f~~~~~~~~~~~~~--~~~~~~l~~~~--~~~g~~~~a~---------~~~~~~~~~~~~-~----~~~~~  112 (465)
                      .+.+.|..+++.+...-.....|  ...|-.++..-  .-.+.++.+.         +.++.+.....+ +    ...+.
T Consensus        26 ~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~l~~~~~~  105 (378)
T 3q15_A           26 FSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYYSLF  105 (378)
T ss_dssp             TCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCCCccHHHHHHHH
Confidence            37788888888763322233223  33444444321  1112222222         555555432221 1    11344


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHhhhCCC-CC----CHHHHHHHHHHHHcCCCHHHHHHHHHHhh---cCCC----CCHHhH
Q 048269          113 IALMTLAEVRELKKMVNFFHIMNDCGC-EY----SLEMLNKVVKTLCQRKLVVEAKYLILKLS---EWIK----PNEIAY  180 (465)
Q Consensus       113 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~m~---~~~~----~~~~~~  180 (465)
                      .....+...|++++|+..|+...+... .+    ...++..+..+|...|+++.|...+++..   ....    ....++
T Consensus       106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  185 (378)
T 3q15_A          106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL  185 (378)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence            456677889999999999999876311 12    24567888999999999999999999876   2211    125678


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCCcchHH
Q 048269          181 GWLIKGYCDVGDLIEASKIWNLMTDE----GFE-PSIDVVDKMIETFFKINKDDEAMKVFQMMRVK---RMDDLGLSTYR  252 (465)
Q Consensus       181 ~~li~~~~~~g~~~~a~~~~~~m~~~----g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~~~~~  252 (465)
                      +.+...|...|++++|...|++..+.    |-. ....++..+..+|...|++++|.+.+++....   ...|....++.
T Consensus       186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  265 (378)
T 3q15_A          186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLF  265 (378)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHH
Confidence            88999999999999999999988762    211 12457888999999999999999999988761   01332466788


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHhcC--CCHhhHHHHHHH
Q 048269          253 IVIDWMCKRGKISQAYTMLEEMFKRG----IEADNLTLSSIIYGLLARGR---LREAYKVVEEIEK--PDISLYHGLIKG  323 (465)
Q Consensus       253 ~li~~~~~~~~~~~a~~~~~~m~~~~----~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~--~~~~~~~~li~~  323 (465)
                      .+...|.+.|++++|...+++..+..    .+.....+..+...|...++   +.+|...+++...  .....+..+...
T Consensus       266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~  345 (378)
T 3q15_A          266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAV  345 (378)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHH
Confidence            89999999999999999999987642    12223345556666777788   8889888888655  233456678889


Q ss_pred             HHhcCCHHHHHHHHHHHHH
Q 048269          324 LLRLRRAREATQVFREMIK  342 (465)
Q Consensus       324 ~~~~~~~~~a~~~~~~m~~  342 (465)
                      |...|++++|...|++..+
T Consensus       346 y~~~g~~~~A~~~~~~al~  364 (378)
T 3q15_A          346 FESSCHFEQAAAFYRKVLK  364 (378)
T ss_dssp             HHHTTCHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHH
Confidence            9999999999999998864

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.28  E-value=6.8e-11  Score=104.27  Aligned_cols=155  Identities=10%  Similarity=-0.000  Sum_probs=86.5

Q ss_pred             hcCChhHHHHHHHHHhh-------CCC-CChHHHHHHHHHHHhcCCHHHHHHHHHHhhhC------CC-CCCHHHHHHHH
Q 048269           86 KSRNIDLFWETLQEMGR-------RRL-VNDKTFKIALMTLAEVRELKKMVNFFHIMNDC------GC-EYSLEMLNKVV  150 (465)
Q Consensus        86 ~~g~~~~a~~~~~~~~~-------~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~ll  150 (465)
                      ..|++++|+..+++..+       .+. ....++..+...+...|++++|+..|+...+.      +- +....++..+.
T Consensus        13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~   92 (283)
T 3edt_B           13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA   92 (283)
T ss_dssp             CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence            45666666666655543       121 23456666777777777777777777766543      11 22344566666


Q ss_pred             HHHHcCCCHHHHHHHHHHhhcC--------CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-cHHHH
Q 048269          151 KTLCQRKLVVEAKYLILKLSEW--------IKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDE------GFEP-SIDVV  215 (465)
Q Consensus       151 ~~~~~~~~~~~a~~~~~~m~~~--------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~~-~~~~~  215 (465)
                      .+|...|++++|...+++....        .+....++..+...|...|++++|...|++..+.      +-.| ...++
T Consensus        93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  172 (283)
T 3edt_B           93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK  172 (283)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            6666777777777766665411        1223445555566666666666666666665543      1111 23445


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHH
Q 048269          216 DKMIETFFKINKDDEAMKVFQMMRV  240 (465)
Q Consensus       216 ~~li~~~~~~g~~~~A~~~~~~m~~  240 (465)
                      ..+..++...|++++|.+.+++...
T Consensus       173 ~~la~~~~~~g~~~~A~~~~~~~l~  197 (283)
T 3edt_B          173 NNLASCYLKQGKYQDAETLYKEILT  197 (283)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            5555555566666666665555543

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.27  E-value=2.5e-10  Score=113.27  Aligned_cols=166  Identities=8%  Similarity=-0.023  Sum_probs=148.8

Q ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHH
Q 048269          107 NDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKG  186 (465)
Q Consensus       107 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~  186 (465)
                      +..+++.+...+.+.|++++|++.|++..+.. +-+..+|+.+..+|.+.|++++|++.|++...-.+-+..+|..+..+
T Consensus         8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~   86 (723)
T 4gyw_A            8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT   86 (723)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            45789999999999999999999999999875 55688999999999999999999999999884446678999999999


Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHH
Q 048269          187 YCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQ  266 (465)
Q Consensus       187 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~  266 (465)
                      |.+.|++++|++.|++..+.. +-+...|+.+..+|.+.|++++|++.|++..+.  .|.+...+..+..++...|++++
T Consensus        87 l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~~~  163 (723)
T 4gyw_A           87 LKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDWTD  163 (723)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCCTT
T ss_pred             HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccHHH
Confidence            999999999999999998863 236789999999999999999999999999876  56578899999999999999999


Q ss_pred             HHHHHHHHHH
Q 048269          267 AYTMLEEMFK  276 (465)
Q Consensus       267 a~~~~~~m~~  276 (465)
                      |.+.++++.+
T Consensus       164 A~~~~~kal~  173 (723)
T 4gyw_A          164 YDERMKKLVS  173 (723)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9998887754

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.25  E-value=1.2e-10  Score=102.70  Aligned_cols=201  Identities=14%  Similarity=0.017  Sum_probs=99.2

Q ss_pred             CHHHHHHHHHHHHcCCCHHHHHHHHHHhh-c------CC-CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC------C
Q 048269          142 SLEMLNKVVKTLCQRKLVVEAKYLILKLS-E------WI-KPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDE------G  207 (465)
Q Consensus       142 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~-~------~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g  207 (465)
                      ...++..+..+|...|++++|+..+++.. .      +. +....++..+...|...|++++|...|.+..+.      .
T Consensus        42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  121 (283)
T 3edt_B           42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK  121 (283)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence            34455566666666666666666666654 1      11 223445566666666666666666666665543      1


Q ss_pred             C-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHC---
Q 048269          208 F-EPSIDVVDKMIETFFKINKDDEAMKVFQMMRVK------RMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKR---  277 (465)
Q Consensus       208 ~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---  277 (465)
                      - +....++..+...+...|++++|.+.+++....      +..|....++..+...|...|++++|..++++..+.   
T Consensus       122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~  201 (283)
T 3edt_B          122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE  201 (283)
T ss_dssp             TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            1 123445566666666666666666666665543      112223445566666666666666666666655532   


Q ss_pred             ----CCCCC-HHHHHHHHHHHHhcCC------HHHHHHHHHHhcC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048269          278 ----GIEAD-NLTLSSIIYGLLARGR------LREAYKVVEEIEK---PDISLYHGLIKGLLRLRRAREATQVFREMIK  342 (465)
Q Consensus       278 ----~~~~~-~~~~~~li~~~~~~~~------~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  342 (465)
                          ...+. ...+..+...+...+.      +..+...++....   .....+..+...|...|++++|..+|++.++
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  280 (283)
T 3edt_B          202 KEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR  280 (283)
T ss_dssp             HHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             hcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                11122 1222222222222111      2233333333322   2233455566666667777777777666553

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.23  E-value=1.5e-09  Score=92.55  Aligned_cols=195  Identities=9%  Similarity=-0.101  Sum_probs=154.0

Q ss_pred             CChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHH
Q 048269          106 VNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIK  185 (465)
Q Consensus       106 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~  185 (465)
                      .++..+......+...|++++|+..|+...+...+++...+..+..++...|++++|++.|++.....+.+..++..+..
T Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~   84 (228)
T 4i17_A            5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA   84 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence            35678888999999999999999999999987633788888889999999999999999999988555667889999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCcH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--CcchHHHHHH
Q 048269          186 GYCDVGDLIEASKIWNLMTDEGFEPSI-------DVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDL--GLSTYRIVID  256 (465)
Q Consensus       186 ~~~~~g~~~~a~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~~li~  256 (465)
                      .|...|++++|...|++..+.. +.+.       ..|..+...+...|++++|.+.|++..+.  .|.  +...+..+..
T Consensus        85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~  161 (228)
T 4i17_A           85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGV  161 (228)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHH
Confidence            9999999999999999998863 2234       56888888899999999999999999865  664  4567777777


Q ss_pred             HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC
Q 048269          257 WMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK  311 (465)
Q Consensus       257 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~  311 (465)
                      +|...|     ..+++++...+. .+...|....  ....+.+++|...+++..+
T Consensus       162 ~~~~~~-----~~~~~~a~~~~~-~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~  208 (228)
T 4i17_A          162 LFYNNG-----ADVLRKATPLAS-SNKEKYASEK--AKADAAFKKAVDYLGEAVT  208 (228)
T ss_dssp             HHHHHH-----HHHHHHHGGGTT-TCHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHH-----HHHHHHHHhccc-CCHHHHHHHH--HHHHHHHHHHHHHHHHHhh
Confidence            775543     444556555432 2444454433  3345668999999999887

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.21  E-value=1.5e-09  Score=96.31  Aligned_cols=98  Identities=11%  Similarity=0.028  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCCC----cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-----
Q 048269          214 VVDKMIETFFKI-NKDDEAMKVFQMMRVKRMDDLG----LSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADN-----  283 (465)
Q Consensus       214 ~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-----  283 (465)
                      +++.+...|... |++++|++.|++..+......+    ..++..+...+...|++++|...|++..+.......     
T Consensus       119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  198 (292)
T 1qqe_A          119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL  198 (292)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred             HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHH
Confidence            444455555553 5555555555554432100000    223455555555555555555555555543222111     


Q ss_pred             -HHHHHHHHHHHhcCCHHHHHHHHHHhcC
Q 048269          284 -LTLSSIIYGLLARGRLREAYKVVEEIEK  311 (465)
Q Consensus       284 -~~~~~li~~~~~~~~~~~a~~~~~~~~~  311 (465)
                       ..+..+..++...|++++|...|++...
T Consensus       199 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~  227 (292)
T 1qqe_A          199 KDYFLKKGLCQLAATDAVAAARTLQEGQS  227 (292)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence             1344445555555666666666655554

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.18  E-value=4.4e-09  Score=93.35  Aligned_cols=213  Identities=14%  Similarity=-0.071  Sum_probs=141.3

Q ss_pred             ChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCCCC-HHHHHHHHHHHHcCCCHHHHH
Q 048269           89 NIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDC----GCEYS-LEMLNKVVKTLCQRKLVVEAK  163 (465)
Q Consensus        89 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~ll~~~~~~~~~~~a~  163 (465)
                      ++++|...|+..              ...+...|++++|+..|++..+.    |-+++ ..+|+.+..+|...|++++|+
T Consensus        32 ~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~   97 (292)
T 1qqe_A           32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV   97 (292)
T ss_dssp             HHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence            366777766665              34566677777777777766542    21122 456777778888888888888


Q ss_pred             HHHHHhh--cCCCCC----HHhHHHHHHHHHhc-CCHHHHHHHHHHHHHCC----CCC-cHHHHHHHHHHHHhcCCHHHH
Q 048269          164 YLILKLS--EWIKPN----EIAYGWLIKGYCDV-GDLIEASKIWNLMTDEG----FEP-SIDVVDKMIETFFKINKDDEA  231 (465)
Q Consensus       164 ~~~~~m~--~~~~~~----~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~g----~~~-~~~~~~~li~~~~~~g~~~~A  231 (465)
                      ..|++..  .....+    ..+++.+...|... |++++|+..|++..+..    -.+ ...++..+...+.+.|++++|
T Consensus        98 ~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A  177 (292)
T 1qqe_A           98 DSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEA  177 (292)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHH
Confidence            8887765  100111    35677888888886 99999999998887631    000 135688889999999999999


Q ss_pred             HHHHHHHHHcCCCCCCcc-----hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-C---HHHHHHHHHHHH--hcCCHH
Q 048269          232 MKVFQMMRVKRMDDLGLS-----TYRIVIDWMCKRGKISQAYTMLEEMFKRGIEA-D---NLTLSSIIYGLL--ARGRLR  300 (465)
Q Consensus       232 ~~~~~~m~~~~~~~~~~~-----~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-~---~~~~~~li~~~~--~~~~~~  300 (465)
                      ++.|++............     .|..+..++...|++++|...|++..+..... +   ...+..++.+|.  ..++++
T Consensus       178 ~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~  257 (292)
T 1qqe_A          178 SDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLS  257 (292)
T ss_dssp             HHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHH
T ss_pred             HHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHH
Confidence            999999887643321111     46677788889999999999999887542110 1   112344555554  456788


Q ss_pred             HHHHHHHHhcCCCHh
Q 048269          301 EAYKVVEEIEKPDIS  315 (465)
Q Consensus       301 ~a~~~~~~~~~~~~~  315 (465)
                      +|...|+.+...++.
T Consensus       258 ~A~~~~~~~~~l~~~  272 (292)
T 1qqe_A          258 EHCKEFDNFMRLDKW  272 (292)
T ss_dssp             HHHHHHTTSSCCCHH
T ss_pred             HHHHHhccCCccHHH
Confidence            888888777664443

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.18  E-value=1.5e-09  Score=83.68  Aligned_cols=128  Identities=13%  Similarity=0.027  Sum_probs=65.4

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcC
Q 048269           77 FNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQR  156 (465)
Q Consensus        77 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~  156 (465)
                      |..+...+...|++++|..+++++.+.++.+..++..+...+...|++++|...++.+...+ +.+...+..+...+...
T Consensus         4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~   82 (136)
T 2fo7_A            4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQ   82 (136)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHh
Confidence            44555555555666666666655555444444555555555555555555555555555433 33344444555555555


Q ss_pred             CCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048269          157 KLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTD  205 (465)
Q Consensus       157 ~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  205 (465)
                      |++++|.+.++++....+.+..++..+...+...|++++|...++.+.+
T Consensus        83 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  131 (136)
T 2fo7_A           83 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE  131 (136)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence            5555555555554422233344444444455555555555555544443

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.17  E-value=1.9e-09  Score=94.05  Aligned_cols=109  Identities=5%  Similarity=-0.163  Sum_probs=84.4

Q ss_pred             CCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC--CCCHHHH
Q 048269           72 HNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVN---DKTFKIALMTLAEVRELKKMVNFFHIMNDCGC--EYSLEML  146 (465)
Q Consensus        72 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~  146 (465)
                      .+...+..+...+.+.|++++|+..|+.+.+..+.+   ..++..+..++.+.|++++|+..|+...+...  +.....+
T Consensus        13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~   92 (261)
T 3qky_A           13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE   92 (261)
T ss_dssp             SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence            367778888888999999999999999998877655   67888889999999999999999999888531  1224566


Q ss_pred             HHHHHHHHc--------CCCHHHHHHHHHHhhcCCCCCHHhH
Q 048269          147 NKVVKTLCQ--------RKLVVEAKYLILKLSEWIKPNEIAY  180 (465)
Q Consensus       147 ~~ll~~~~~--------~~~~~~a~~~~~~m~~~~~~~~~~~  180 (465)
                      ..+..++..        .|++++|+..|+++....+.+....
T Consensus        93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~  134 (261)
T 3qky_A           93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVD  134 (261)
T ss_dssp             HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHH
T ss_pred             HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHH
Confidence            777778887        8999999999998873333333333

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.16  E-value=3.8e-07  Score=89.63  Aligned_cols=218  Identities=10%  Similarity=-0.032  Sum_probs=127.0

Q ss_pred             HHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 048269          195 EASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAM-KVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEE  273 (465)
Q Consensus       195 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~  273 (465)
                      .+..+|++.... ++-+...|...+..+...|+.++|. ++|+.....  .|.+...|-..+....+.|+++.|..+|+.
T Consensus       327 Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~--~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek  403 (679)
T 4e6h_A          327 RMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC--IPNSAVLAFSLSEQYELNTKIPEIETTILS  403 (679)
T ss_dssp             HHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            345566666654 2335666766666666677777775 777776653  343555566666666777777777777776


Q ss_pred             HHHCC---------CCCC------------HHHHHHHHHHHHhcCCHHHHHHHHHHhcCC----CHhhHHHHHHHHHhc-
Q 048269          274 MFKRG---------IEAD------------NLTLSSIIYGLLARGRLREAYKVVEEIEKP----DISLYHGLIKGLLRL-  327 (465)
Q Consensus       274 m~~~~---------~~~~------------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~li~~~~~~-  327 (465)
                      +....         ..|+            ...|...+....+.|..+.|..+|....+.    ....|-..+..-.+. 
T Consensus       404 ~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~  483 (679)
T 4e6h_A          404 CIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHIS  483 (679)
T ss_dssp             HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhC
Confidence            66431         0121            234666666666667777777777766541    222232222222222 


Q ss_pred             CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccC-----------CCCCC---CchHHHHHHHHHHHhcCCHHHHHH
Q 048269          328 RRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRG-----------RKGPD---PLVNFDTIFVGGLVKAGKSLDAAK  393 (465)
Q Consensus       328 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-----------~~~~~---~~~~~~~~li~~~~~~g~~~~A~~  393 (465)
                      ++.+.|..+|+..++. .+-+...+...+......++           ....+   -....|..++..-.+.|+.+.+.+
T Consensus       484 ~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~  562 (679)
T 4e6h_A          484 KDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRT  562 (679)
T ss_dssp             SCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHH
T ss_pred             CCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            3467777777777655 22233333333333322222           11111   134578888888899999999999


Q ss_pred             HHHHHHhCCCCCCHhhHHHHHHHHh
Q 048269          394 YVERVMNRGVEVPRFDYNKFLHYYS  418 (465)
Q Consensus       394 ~~~~m~~~~~~p~~~~~~~ll~~~~  418 (465)
                      +.+++.+.  .|+......+..-|.
T Consensus       563 v~~R~~~~--~P~~~~~~~f~~ry~  585 (679)
T 4e6h_A          563 LEKRFFEK--FPEVNKLEEFTNKYK  585 (679)
T ss_dssp             HHHHHHHH--STTCCHHHHHHHHTC
T ss_pred             HHHHHHHh--CCCCcHHHHHHHHhc
Confidence            99999984  566555555555553

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.11  E-value=2.8e-09  Score=89.39  Aligned_cols=114  Identities=11%  Similarity=0.010  Sum_probs=59.9

Q ss_pred             HHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHH----------------HHHHHHhcCCHHHHHHHHHHhhhC
Q 048269           74 SITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKI----------------ALMTLAEVRELKKMVNFFHIMNDC  137 (465)
Q Consensus        74 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~~  137 (465)
                      ...+......+.+.|++++|+..|++..+.++.+...+..                +..++.+.|++++|+..|+...+.
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   83 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK   83 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            3344445556677778888888887777665544444444                444455555555555555554443


Q ss_pred             CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHH
Q 048269          138 GCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYC  188 (465)
Q Consensus       138 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~  188 (465)
                      . +-+...+..+..++...|++++|+..|++...-.+.+..++..+...|.
T Consensus        84 ~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~  133 (208)
T 3urz_A           84 A-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYY  133 (208)
T ss_dssp             C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            2 2344444445555555555555555555544222334444444444443

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.10  E-value=5.3e-08  Score=85.03  Aligned_cols=242  Identities=12%  Similarity=0.019  Sum_probs=135.2

Q ss_pred             HHHHhcCChhHHHHHHHHHhhCCC-CChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHH
Q 048269           82 DIIGKSRNIDLFWETLQEMGRRRL-VNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVV  160 (465)
Q Consensus        82 ~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~  160 (465)
                      +-..-.|++..++.-..   +... .....-..+.+++...|++...         ..-.|....+..+...+ ..+   
T Consensus        21 kn~fy~G~yq~~i~e~~---~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~---   84 (310)
T 3mv2_B           21 KQNYYTGNFVQCLQEIE---KFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK---   84 (310)
T ss_dssp             HHHHTTTCHHHHTHHHH---TSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT---
T ss_pred             HHHHHhhHHHHHHHHHH---hcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc---
Confidence            33444566666665222   2222 1223333445666666666531         11133333333333322 222   


Q ss_pred             HHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048269          161 EAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGF-EPSIDVVDKMIETFFKINKDDEAMKVFQMMR  239 (465)
Q Consensus       161 ~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  239 (465)
                       |+..|++....-+++..++..+..++...|++++|++++......|- .-+...+..++..+.+.|+.+.|.+.++.|.
T Consensus        85 -a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~  163 (310)
T 3mv2_B           85 -NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT  163 (310)
T ss_dssp             -CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence             56667766632245555556777777777777777777777665542 1256667777777777777777777777776


Q ss_pred             HcCCCCC----CcchHHHHHHH--HHhcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC
Q 048269          240 VKRMDDL----GLSTYRIVIDW--MCKRG--KISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK  311 (465)
Q Consensus       240 ~~~~~~~----~~~~~~~li~~--~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~  311 (465)
                      +.  .|.    +..+...++.+  ....|  +...|..+|+++...  .|+..+...++.++.+.|++++|...++.+.+
T Consensus       164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~  239 (310)
T 3mv2_B          164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS  239 (310)
T ss_dssp             HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred             hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            55  220    13444445544  22223  777777777777654  34433334444477777777777777765543


Q ss_pred             -------------CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 048269          312 -------------PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPT  348 (465)
Q Consensus       312 -------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~  348 (465)
                                   .|..+...+|......|+  +|.++++++.+.  .|+
T Consensus       240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~--~P~  285 (310)
T 3mv2_B          240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL--DHE  285 (310)
T ss_dssp             HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT--TCC
T ss_pred             hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh--CCC
Confidence                         244555344444444565  677777777754  454

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.10  E-value=6.9e-09  Score=79.78  Aligned_cols=129  Identities=15%  Similarity=0.087  Sum_probs=74.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHh
Q 048269          110 TFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCD  189 (465)
Q Consensus       110 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~  189 (465)
                      ++..+...+...|++++|+.+|+.+.+.. +.+...+..+...+...|++++|..+++++....+.+...+..+...+..
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~   81 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK   81 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence            34555666666666666666666665543 33455555566666666666666666666552224445555556666666


Q ss_pred             cCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048269          190 VGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRV  240 (465)
Q Consensus       190 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  240 (465)
                      .|++++|.+.++.+.+.. +.+..++..+...+.+.|++++|.+.++++..
T Consensus        82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  131 (136)
T 2fo7_A           82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE  131 (136)
T ss_dssp             TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence            666666666666655542 22345555555566666666666666655544

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.09  E-value=5.3e-09  Score=91.19  Aligned_cols=99  Identities=12%  Similarity=0.039  Sum_probs=54.4

Q ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC---HHHHHHHHHHHHcCCCHHHHHHHHHHhhcC---CCCCHHhH
Q 048269          107 NDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYS---LEMLNKVVKTLCQRKLVVEAKYLILKLSEW---IKPNEIAY  180 (465)
Q Consensus       107 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~~  180 (465)
                      +...+..+...+.+.|++++|+..|+.+.+.. +.+   ...+..+..++.+.|++++|+..|++....   .+....++
T Consensus        14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~   92 (261)
T 3qky_A           14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE   92 (261)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence            44555555666666666666666666666542 222   445555666666666666666666665511   11223344


Q ss_pred             HHHHHHHHh--------cCCHHHHHHHHHHHHHC
Q 048269          181 GWLIKGYCD--------VGDLIEASKIWNLMTDE  206 (465)
Q Consensus       181 ~~li~~~~~--------~g~~~~a~~~~~~m~~~  206 (465)
                      ..+..++..        .|++++|...|+++.+.
T Consensus        93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~  126 (261)
T 3qky_A           93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR  126 (261)
T ss_dssp             HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence            455555555        55566666666655553

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.04  E-value=2.2e-08  Score=87.37  Aligned_cols=177  Identities=11%  Similarity=0.021  Sum_probs=106.1

Q ss_pred             HHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh-cCC-CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048269          127 MVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLS-EWI-KPNEIAYGWLIKGYCDVGDLIEASKIWNLMT  204 (465)
Q Consensus       127 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~-~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  204 (465)
                      |+..|++..+.+ .++..++..+..++...|++++|++++.+.. .+. .-+...+..++..+.+.|+.+.|.+.++.|.
T Consensus        85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~  163 (310)
T 3mv2_B           85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT  163 (310)
T ss_dssp             CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            566676666554 4455555566677777777777777777764 221 2455666677777777777777777777776


Q ss_pred             HCCCCC-----cHHHHHHHHHHH--HhcC--CHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 048269          205 DEGFEP-----SIDVVDKMIETF--FKIN--KDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMF  275 (465)
Q Consensus       205 ~~g~~~-----~~~~~~~li~~~--~~~g--~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  275 (465)
                      +.  .|     +..+...|..++  ...|  ++.+|..+|+++.+.  .| +..+-..++.++.+.|++++|.+.++.+.
T Consensus       164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p-~~~~~~lLln~~~~~g~~~eAe~~L~~l~  238 (310)
T 3mv2_B          164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FP-TWKTQLGLLNLHLQQRNIAEAQGIVELLL  238 (310)
T ss_dssp             HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SC-SHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CC-CcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            64  44     245555555552  2223  677777777777544  33 32233444446777777777777777554


Q ss_pred             HCC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC
Q 048269          276 KRG---------IEADNLTLSSIIYGLLARGRLREAYKVVEEIEK  311 (465)
Q Consensus       276 ~~~---------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~  311 (465)
                      +.-         -+-++.++..+|......|+  +|.++++++.+
T Consensus       239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~  281 (310)
T 3mv2_B          239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK  281 (310)
T ss_dssp             SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred             HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence            320         02245555455555555565  66677777666

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.04  E-value=2.1e-09  Score=107.12  Aligned_cols=152  Identities=7%  Similarity=-0.084  Sum_probs=72.3

Q ss_pred             HhcCChhHHHHHHHHHh--------hCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcC
Q 048269           85 GKSRNIDLFWETLQEMG--------RRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQR  156 (465)
Q Consensus        85 ~~~g~~~~a~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~  156 (465)
                      ...|++++|++.+++..        +..+.+...+..+...+.+.|++++|+..|+...+.. +.+...|..+..++...
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~  480 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT  480 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence            44455555555555554        3333344445555555555555555555555554432 23444444455555555


Q ss_pred             CCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048269          157 KLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQ  236 (465)
Q Consensus       157 ~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~  236 (465)
                      |++++|+..|++...-.+.+...+..+..+|.+.|++++ +..|++..+.. +-+...|..+..++.+.|++++|.+.|+
T Consensus       481 g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~  558 (681)
T 2pzi_A          481 GDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTLD  558 (681)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            555555555555442223344444455555555555555 55555544432 1233444445555555555555555554


Q ss_pred             HHH
Q 048269          237 MMR  239 (465)
Q Consensus       237 ~m~  239 (465)
                      +..
T Consensus       559 ~al  561 (681)
T 2pzi_A          559 EVP  561 (681)
T ss_dssp             TSC
T ss_pred             hhc
Confidence            443

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.02  E-value=2.7e-08  Score=84.51  Aligned_cols=187  Identities=6%  Similarity=-0.132  Sum_probs=124.4

Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC-CCH-HHHH
Q 048269           73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVN---DKTFKIALMTLAEVRELKKMVNFFHIMNDCGCE-YSL-EMLN  147 (465)
Q Consensus        73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~-~~~~  147 (465)
                      ++..+..+...+.+.|++++|+..|+++.+..+.+   ..++..+..++.+.|++++|+..|+.+.+.... +.. ..+.
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~   82 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY   82 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence            45667777788888999999999999988765532   357788888999999999999999998875311 111 2343


Q ss_pred             HHHHHHHc------------------CCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 048269          148 KVVKTLCQ------------------RKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFE  209 (465)
Q Consensus       148 ~ll~~~~~------------------~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~  209 (465)
                      .+..++..                  .|+.++|+..|+++....|-+..++........          +...+      
T Consensus        83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~----------~~~~~------  146 (225)
T 2yhc_A           83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVF----------LKDRL------  146 (225)
T ss_dssp             HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHH----------HHHHH------
T ss_pred             HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHH----------HHHHH------
Confidence            44444433                  567788888888877444444443332211100          00010      


Q ss_pred             CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCc---chHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 048269          210 PSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGL---STYRIVIDWMCKRGKISQAYTMLEEMFKRGI  279 (465)
Q Consensus       210 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~  279 (465)
                        ......+...+.+.|++++|...|+.+.+.  .|.+.   ..+..+..+|.+.|+.++|.+.++.+...+.
T Consensus       147 --~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~  215 (225)
T 2yhc_A          147 --AKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS  215 (225)
T ss_dssp             --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred             --HHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence              011235567788888999999988888876  44222   4677888888889999999988888877643

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.00  E-value=6.4e-09  Score=84.64  Aligned_cols=160  Identities=9%  Similarity=-0.020  Sum_probs=77.8

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH-HHc
Q 048269           77 FNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKT-LCQ  155 (465)
Q Consensus        77 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~~  155 (465)
                      +......+.+.|++++|...|++..+.++.+...+..+...+.+.|++++|+..|+...+..  |+...+..+... +..
T Consensus         9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~   86 (176)
T 2r5s_A            9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQ   86 (176)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHh
Confidence            44455556666666666666666655555555566666666666666666666666655432  233322221111 111


Q ss_pred             CCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-cHHHHHHHHHHHHhcCCHHHHHHH
Q 048269          156 RKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEP-SIDVVDKMIETFFKINKDDEAMKV  234 (465)
Q Consensus       156 ~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~  234 (465)
                      .+....|+..+++.....+.+...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.++|...
T Consensus        87 ~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~  166 (176)
T 2r5s_A           87 QAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK  166 (176)
T ss_dssp             HHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred             hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence            1112234444444442223344555555555555555555555555554432111 133444555555555555555555


Q ss_pred             HHHH
Q 048269          235 FQMM  238 (465)
Q Consensus       235 ~~~m  238 (465)
                      |++.
T Consensus       167 y~~a  170 (176)
T 2r5s_A          167 YRRQ  170 (176)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5443

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.00  E-value=9.6e-09  Score=83.58  Aligned_cols=163  Identities=9%  Similarity=0.053  Sum_probs=110.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHH-HH
Q 048269          110 TFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKG-YC  188 (465)
Q Consensus       110 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~-~~  188 (465)
                      .+......+.+.|++++|+..|+...+.. +.+...+..+..++...|++++|+..+++.....+ +...+..+... +.
T Consensus         8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~   85 (176)
T 2r5s_A            8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELH   85 (176)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHH
Confidence            45566777888888888888888877654 45677788888888888888888888888763223 44433332211 12


Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHH
Q 048269          189 DVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAY  268 (465)
Q Consensus       189 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~  268 (465)
                      ..++...|...++...+.. +-+...+..+..++...|++++|.+.|+++.+....+.+...+..+...+...|+.++|.
T Consensus        86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~  164 (176)
T 2r5s_A           86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA  164 (176)
T ss_dssp             HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred             hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence            2223334677777776652 224677777888888888888888888887765332223457777778888888888888


Q ss_pred             HHHHHHH
Q 048269          269 TMLEEMF  275 (465)
Q Consensus       269 ~~~~~m~  275 (465)
                      ..|++..
T Consensus       165 ~~y~~al  171 (176)
T 2r5s_A          165 SKYRRQL  171 (176)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7777654

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.00  E-value=5.2e-09  Score=104.25  Aligned_cols=170  Identities=8%  Similarity=-0.135  Sum_probs=145.2

Q ss_pred             CChhHHHHHHHHHh--------hcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcC
Q 048269           51 LSWRPVYLFFQYTQ--------KAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVR  122 (465)
Q Consensus        51 ~~~~~a~~~f~~~~--------~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  122 (465)
                      .+++.|++.|+.++        ...+   .+...+..+..++.+.|++++|++.|+++.+.++.+...|..+..++...|
T Consensus       405 ~~~~~A~~~~~~al~~~~~~~~~~~p---~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g  481 (681)
T 2pzi_A          405 SQPVQTLDSLRAARHGALDADGVDFS---ESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG  481 (681)
T ss_dssp             CCHHHHHHHHHHHHTC-------CCT---TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred             cCHHHHHHHHHHhhhhcccccccccc---cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence            48899999999985        3333   377889999999999999999999999999988888999999999999999


Q ss_pred             CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 048269          123 ELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNL  202 (465)
Q Consensus       123 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  202 (465)
                      ++++|+..|++..+.. +.+...+..+..++.+.|++++ ++.|++...-.+.+...|..+..++.+.|++++|++.|++
T Consensus       482 ~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~  559 (681)
T 2pzi_A          482 DYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDE  559 (681)
T ss_dssp             CHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence            9999999999999875 4567888999999999999999 9999998854577888999999999999999999999999


Q ss_pred             HHHCCCCCc-HHHHHHHHHHHHhcCC
Q 048269          203 MTDEGFEPS-IDVVDKMIETFFKINK  227 (465)
Q Consensus       203 m~~~g~~~~-~~~~~~li~~~~~~g~  227 (465)
                      ..+.  .|+ ...+..+..++...++
T Consensus       560 al~l--~P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          560 VPPT--SRHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             SCTT--STTHHHHHHHHHHHTC----
T ss_pred             hccc--CcccHHHHHHHHHHHHccCC
Confidence            8775  454 5677778888766555

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.00  E-value=3.1e-07  Score=81.00  Aligned_cols=220  Identities=5%  Similarity=-0.084  Sum_probs=143.8

Q ss_pred             ChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcC--ChhHHHHHHHHHhhCCCCChHHHHHHHHHH----Hhc---C
Q 048269           52 SWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSR--NIDLFWETLQEMGRRRLVNDKTFKIALMTL----AEV---R  122 (465)
Q Consensus        52 ~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~  122 (465)
                      ..+.|+..++.++...|.   +..+|+.--.++...|  +++++++.++.+...++.+..+|+.-...+    ...   +
T Consensus        48 ~s~~aL~~t~~~L~~nP~---~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~  124 (306)
T 3dra_A           48 YSERALHITELGINELAS---HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDF  124 (306)
T ss_dssp             CSHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred             CCHHHHHHHHHHHHHCcH---HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccC
Confidence            445778888777777766   6777777777777777  788888888887777776666666554444    444   6


Q ss_pred             CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHH--HHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCC------HH
Q 048269          123 ELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVV--EAKYLILKLSEWIKPNEIAYGWLIKGYCDVGD------LI  194 (465)
Q Consensus       123 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~--~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~------~~  194 (465)
                      ++++++.+++.+.+.. +-+-.+|+.-..++.+.|.++  +++++++++....+-|...|+.-.......+.      ++
T Consensus       125 ~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~  203 (306)
T 3dra_A          125 DPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTID  203 (306)
T ss_dssp             CTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred             CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHH
Confidence            7777777777777754 556777777666666677766  77777777774445666677666655555555      66


Q ss_pred             HHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHcC-CCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 048269          195 EASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDE-AMKVFQMMRVKR-MDDLGLSTYRIVIDWMCKRGKISQAYTMLE  272 (465)
Q Consensus       195 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~  272 (465)
                      ++++.++.+.... +-|...|+-+-..+.+.|+... +.++..++...+ ..|.++..+..+..+|.+.|+.++|.++++
T Consensus       204 eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~  282 (306)
T 3dra_A          204 EELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD  282 (306)
T ss_dssp             HHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence            7777777666653 2356666666666666665333 444555444322 113355666667777777777777777777


Q ss_pred             HHHH
Q 048269          273 EMFK  276 (465)
Q Consensus       273 ~m~~  276 (465)
                      .+.+
T Consensus       283 ~l~~  286 (306)
T 3dra_A          283 LLKS  286 (306)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            7664

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.99  E-value=2e-08  Score=84.07  Aligned_cols=74  Identities=9%  Similarity=0.174  Sum_probs=35.3

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHH
Q 048269          183 LIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMC  259 (465)
Q Consensus       183 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~  259 (465)
                      +..+|.+.|++++|+..|++..+.. +-+...+..+..++...|++++|.+.|++..+.  .|.+..++..+..+|.
T Consensus        60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~  133 (208)
T 3urz_A           60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYY  133 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHH
Confidence            4444555555555555555554432 123444555555555555555555555555443  3334444444444443

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.98  E-value=1.8e-08  Score=98.57  Aligned_cols=151  Identities=7%  Similarity=-0.115  Sum_probs=82.8

Q ss_pred             ChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 048269           52 SWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFF  131 (465)
Q Consensus        52 ~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  131 (465)
                      +.+.|...|+.++...++   +...|..+...+.+.|++++|.+.+++..+.++.+..++..+...+...|++++|++.|
T Consensus         4 ~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~   80 (568)
T 2vsy_A            4 DGPRELLQLRAAVRHRPQ---DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL   80 (568)
T ss_dssp             -----------------C---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            445566666665333333   55666666666666666666666666666665555566666666666666666666666


Q ss_pred             HHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhc---CCHHHHHHHHHHHHHC
Q 048269          132 HIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDV---GDLIEASKIWNLMTDE  206 (465)
Q Consensus       132 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~  206 (465)
                      ++..+.. +.+...+..+..++.+.|++++|.+.|++.....+.+...+..+...+...   |+.++|.+.+++..+.
T Consensus        81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~  157 (568)
T 2vsy_A           81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ  157 (568)
T ss_dssp             HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence            6666543 334556666666666666666666666665532344555666666666666   6666666666666554

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.97  E-value=3e-07  Score=81.11  Aligned_cols=219  Identities=7%  Similarity=-0.048  Sum_probs=142.4

Q ss_pred             CChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcC--CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH----HcC---CC
Q 048269           88 RNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVR--ELKKMVNFFHIMNDCGCEYSLEMLNKVVKTL----CQR---KL  158 (465)
Q Consensus        88 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~----~~~---~~  158 (465)
                      ...++|+++++.+...++....+|+.-...+...+  +++++++.++.+.... +-+..+|+.--.++    ...   ++
T Consensus        47 e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~  125 (306)
T 3dra_A           47 EYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFD  125 (306)
T ss_dssp             CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred             CCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCC
Confidence            34468999999999888888888888888888888  8999999998888764 44556666544444    444   67


Q ss_pred             HHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHH--HHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCC------HHH
Q 048269          159 VVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLI--EASKIWNLMTDEGFEPSIDVVDKMIETFFKINK------DDE  230 (465)
Q Consensus       159 ~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~--~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~------~~~  230 (465)
                      +++++.+++++....+.|..+|+.-.-.+.+.|.++  ++++.++.+.+... -|...|+.....+.+.+.      +++
T Consensus       126 ~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~~~e  204 (306)
T 3dra_A          126 PYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNTIDE  204 (306)
T ss_dssp             THHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhhHHH
Confidence            788888888877555667777777777777777776  77777777777643 356666666555555555      666


Q ss_pred             HHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHH-HHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048269          231 AMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQ-AYTMLEEMFKRG--IEADNLTLSSIIYGLLARGRLREAYKVVE  307 (465)
Q Consensus       231 A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~-a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~  307 (465)
                      +++.++.+...  .|.|...|+-+-..+.+.|+... +..+..++...+  -..+...+..+...|.+.|+.++|.++++
T Consensus       205 El~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~  282 (306)
T 3dra_A          205 ELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD  282 (306)
T ss_dssp             HHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence            77777666655  44466667666666666665332 334444443322  12244455555555555555555555555


Q ss_pred             Hhc
Q 048269          308 EIE  310 (465)
Q Consensus       308 ~~~  310 (465)
                      .+.
T Consensus       283 ~l~  285 (306)
T 3dra_A          283 LLK  285 (306)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            544

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.95  E-value=3.6e-08  Score=87.17  Aligned_cols=161  Identities=7%  Similarity=-0.030  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHh-HHHHHHHHH
Q 048269          110 TFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIA-YGWLIKGYC  188 (465)
Q Consensus       110 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~li~~~~  188 (465)
                      .+..+...+.+.|++++|+..|+...+.. +-+...+..+..++.+.|++++|...++++... .|+... .......+.
T Consensus       119 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~-~p~~~~~~~~~~~~l~  196 (287)
T 3qou_A          119 LXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ-DQDTRYQGLVAQIELL  196 (287)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG-GCSHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh-hcchHHHHHHHHHHHH
Confidence            34444444444555555555555444432 233444444444555555555555555544311 112211 111122233


Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHH
Q 048269          189 DVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAY  268 (465)
Q Consensus       189 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~  268 (465)
                      ..++.+.|...+++..+.. +.+...+..+...+...|++++|.+.|..+.+......+...+..++..+...|+.+.|.
T Consensus       197 ~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~  275 (287)
T 3qou_A          197 XQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALA  275 (287)
T ss_dssp             HHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHH
T ss_pred             hhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHH
Confidence            4444444555555444432 223444555555555555555555555555544211111344555555555555555555


Q ss_pred             HHHHH
Q 048269          269 TMLEE  273 (465)
Q Consensus       269 ~~~~~  273 (465)
                      ..|++
T Consensus       276 ~~~r~  280 (287)
T 3qou_A          276 SXYRR  280 (287)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55444

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.95  E-value=4e-07  Score=80.67  Aligned_cols=201  Identities=8%  Similarity=0.011  Sum_probs=100.7

Q ss_pred             hhCCCCCCHHHHHHHHhcCCCChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCh--
Q 048269           31 SSCNFNLTHEFFLQICNNFPLSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVND--  108 (465)
Q Consensus        31 ~~~~~~~~~~~~~~~l~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--  108 (465)
                      +.-...|+...+..++..+..+++.-.......   .   ......+...+..+...|++++|.+.++...+......  
T Consensus        38 e~g~~~~~~~~l~~l~~~l~~~~~~l~~~~~~~---~---~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~  111 (293)
T 2qfc_A           38 ESGAVYPSMDILQGIAAKLQIPIIHFYEVLIYS---D---IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEF  111 (293)
T ss_dssp             HTSSSCCCHHHHHHHTTTSCCCTHHHHHHHHHH---H---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred             HCCCCCCCHHHHHHHHHHhCcCHHHHhcccccc---c---hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhH
Confidence            333445677777777766665554433332221   0   01234455566677777777777777776665443221  


Q ss_pred             ----HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC---CCC--HHHHHHHHHHHHcCCCHHHHHHHHHHhh---cCCCCC
Q 048269          109 ----KTFKIALMTLAEVRELKKMVNFFHIMNDCGC---EYS--LEMLNKVVKTLCQRKLVVEAKYLILKLS---EWIKPN  176 (465)
Q Consensus       109 ----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~---~~~~~~  176 (465)
                          ..+..+...+...|++++|+..++...+...   .+.  ..+++.+...|...|++++|...|++..   ...+.+
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~  191 (293)
T 2qfc_A          112 QQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDN  191 (293)
T ss_dssp             HHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCcc
Confidence                1223344445555666666666666554211   111  3355555666666666666666665544   111111


Q ss_pred             ----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCC-cHHHHHHHHHHHHhcCCHHHH-HHHHHH
Q 048269          177 ----EIAYGWLIKGYCDVGDLIEASKIWNLMTDEG----FEP-SIDVVDKMIETFFKINKDDEA-MKVFQM  237 (465)
Q Consensus       177 ----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g----~~~-~~~~~~~li~~~~~~g~~~~A-~~~~~~  237 (465)
                          ..++..+...|...|++++|...+++..+..    ... -..+|..+..+|.+.|++++| ...++.
T Consensus       192 ~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~  262 (293)
T 2qfc_A          192 EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKK  262 (293)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             ccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence                1345555555555555555555555544321    000 134455555555555555555 443443

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.94  E-value=4.6e-08  Score=86.47  Aligned_cols=166  Identities=11%  Similarity=0.017  Sum_probs=113.6

Q ss_pred             CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHH-H
Q 048269          140 EYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDK-M  218 (465)
Q Consensus       140 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~-l  218 (465)
                      +.+...+..+...+...|++++|+..|++.....+.+...+..+...+.+.|++++|...++.+...  .|+...... .
T Consensus       114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~  191 (287)
T 3qou_A          114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVA  191 (287)
T ss_dssp             CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHH
T ss_pred             CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHH
Confidence            3445556667777777888888888888777444666777777778888888888888888777654  344433222 2


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC
Q 048269          219 IETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEA-DNLTLSSIIYGLLARG  297 (465)
Q Consensus       219 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~~  297 (465)
                      ...+...++.+.|.+.+++....  .|.+...+..+...+...|++++|...|.++.+..... +...+..+...+...|
T Consensus       192 ~~~l~~~~~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g  269 (287)
T 3qou_A          192 QIELLXQAADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG  269 (287)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred             HHHHHhhcccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence            23355666777777777777765  45467777777788888888888888888777653321 2556777777777788


Q ss_pred             CHHHHHHHHHHh
Q 048269          298 RLREAYKVVEEI  309 (465)
Q Consensus       298 ~~~~a~~~~~~~  309 (465)
                      +.++|...+++.
T Consensus       270 ~~~~a~~~~r~a  281 (287)
T 3qou_A          270 TGDALASXYRRQ  281 (287)
T ss_dssp             TTCHHHHHHHHH
T ss_pred             CCCcHHHHHHHH
Confidence            777777766653

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.93  E-value=4e-09  Score=83.24  Aligned_cols=54  Identities=7%  Similarity=-0.120  Sum_probs=20.0

Q ss_pred             HHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 048269          114 ALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILK  168 (465)
Q Consensus       114 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~  168 (465)
                      +...|.+.|++++|++.|+...+.. +-+..+|..+..+|...|++++|+..|++
T Consensus        37 la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~   90 (150)
T 4ga2_A           37 FAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVECYRR   90 (150)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHHHHHH
Confidence            3333333333333333333333322 22333333333333333333333333333

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.93  E-value=9.6e-08  Score=81.06  Aligned_cols=186  Identities=9%  Similarity=-0.053  Sum_probs=117.4

Q ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC-C-CHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCH---HhHH
Q 048269          107 NDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCE-Y-SLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNE---IAYG  181 (465)
Q Consensus       107 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~  181 (465)
                      ++..+..+...+.+.|++++|+..|+.+.+.... | ....+..+..++.+.|++++|+..|+++....+.+.   .++.
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~   82 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY   82 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence            3455666777888889999999999998875311 1 135677788888999999999999999872222222   2344


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchH----------
Q 048269          182 WLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTY----------  251 (465)
Q Consensus       182 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~----------  251 (465)
                      .+..++...|..     .+            ..|..+...+...|++++|.+.|+.+.+.  .|.+..++          
T Consensus        83 ~~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~  143 (225)
T 2yhc_A           83 MRGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLK  143 (225)
T ss_dssp             HHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHH
Confidence            444444432210     00            01112222233345555555555555543  33222222          


Q ss_pred             -------HHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHhcC
Q 048269          252 -------RIVIDWMCKRGKISQAYTMLEEMFKRGIEA--DNLTLSSIIYGLLARGRLREAYKVVEEIEK  311 (465)
Q Consensus       252 -------~~li~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~  311 (465)
                             ..+...|.+.|++++|...|+++.+.....  ....+..+..+|.+.|+.++|...++.+..
T Consensus       144 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~  212 (225)
T 2yhc_A          144 DRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA  212 (225)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence                   356788999999999999999998863221  125678889999999999999999998765

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.92  E-value=3.2e-08  Score=96.71  Aligned_cols=154  Identities=9%  Similarity=-0.054  Sum_probs=111.5

Q ss_pred             cCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 048269           87 SRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLI  166 (465)
Q Consensus        87 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~  166 (465)
                      .|++++|.+.+++..+.++.+...+..+...+.+.|++++|++.|++..+.. +.+...+..+..+|...|++++|.+.+
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~   80 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL   80 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            4778888888888888777777888888888889999999999998888764 456778888888888899999999999


Q ss_pred             HHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHcC
Q 048269          167 LKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKI---NKDDEAMKVFQMMRVKR  242 (465)
Q Consensus       167 ~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~~  242 (465)
                      ++.....+.+...+..+..+|.+.|++++|.+.|++..+.. +.+...+..+..++...   |++++|.+.+++..+.+
T Consensus        81 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~  158 (568)
T 2vsy_A           81 QQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG  158 (568)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence            88874446677888888888999999999999998888763 23567788888888888   88999999988887763

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.89  E-value=4.8e-07  Score=80.20  Aligned_cols=159  Identities=8%  Similarity=-0.071  Sum_probs=77.3

Q ss_pred             HHHHHHhcCChhHHHHHHHHHhhCCCCChH------HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC-CC----HHHHHH
Q 048269           80 MVDIIGKSRNIDLFWETLQEMGRRRLVNDK------TFKIALMTLAEVRELKKMVNFFHIMNDCGCE-YS----LEMLNK  148 (465)
Q Consensus        80 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~  148 (465)
                      .+..+...|++++|..++++..+....++.      .+..+...+...+++++|+..|+...+.... ++    ..+++.
T Consensus        81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~  160 (293)
T 3u3w_A           81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA  160 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence            355666667777777776666554332211      2223444445555666666666666552211 11    224555


Q ss_pred             HHHHHHcCCCHHHHHHHHHHhh---c---CCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-cHHHHH
Q 048269          149 VVKTLCQRKLVVEAKYLILKLS---E---WIKPN-EIAYGWLIKGYCDVGDLIEASKIWNLMTDE----GFEP-SIDVVD  216 (465)
Q Consensus       149 ll~~~~~~~~~~~a~~~~~~m~---~---~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~-~~~~~~  216 (465)
                      +..+|...|++++|+..|++..   .   +..+. ..++..+...|.+.|++++|...+++..+.    +..+ -..+|.
T Consensus       161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~  240 (293)
T 3u3w_A          161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY  240 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence            5566666666666666665554   1   11111 124445555555555555555555544431    1111 134445


Q ss_pred             HHHHHHHhcCC-HHHHHHHHHHH
Q 048269          217 KMIETFFKINK-DDEAMKVFQMM  238 (465)
Q Consensus       217 ~li~~~~~~g~-~~~A~~~~~~m  238 (465)
                      .+..++.+.|+ +++|.+.+++.
T Consensus       241 ~lg~~~~~~g~~~~~A~~~~~~A  263 (293)
T 3u3w_A          241 QRGECLRKLEYEEAEIEDAYKKA  263 (293)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHH
Confidence            55555555552 35555544443

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.88  E-value=2.9e-07  Score=77.23  Aligned_cols=92  Identities=10%  Similarity=-0.008  Sum_probs=42.8

Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcC----CHHHHHHHHHHhhhCCCCCCHHHHHH
Q 048269           73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVR----ELKKMVNFFHIMNDCGCEYSLEMLNK  148 (465)
Q Consensus        73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~  148 (465)
                      ++..+..+...|...+++++|.+.|++..+.|  ++.++..+...|.. +    ++++|+..|+...+.|   +...+..
T Consensus        17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g--~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~   90 (212)
T 3rjv_A           17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG--DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIV   90 (212)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred             CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence            45555555555555555555555555554443  23334444444444 3    4555555555444432   3334444


Q ss_pred             HHHHHHc----CCCHHHHHHHHHHhh
Q 048269          149 VVKTLCQ----RKLVVEAKYLILKLS  170 (465)
Q Consensus       149 ll~~~~~----~~~~~~a~~~~~~m~  170 (465)
                      |...|..    .+++++|+.+|++..
T Consensus        91 Lg~~y~~g~g~~~d~~~A~~~~~~A~  116 (212)
T 3rjv_A           91 LARVLVNRQAGATDVAHAITLLQDAA  116 (212)
T ss_dssp             HHHHHTCGGGSSCCHHHHHHHHHHHT
T ss_pred             HHHHHHcCCCCccCHHHHHHHHHHHH
Confidence            4444443    444444444444444

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.88  E-value=1.8e-08  Score=79.48  Aligned_cols=137  Identities=9%  Similarity=0.033  Sum_probs=113.4

Q ss_pred             ChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 048269           52 SWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFF  131 (465)
Q Consensus        52 ~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  131 (465)
                      +.+.|+..|..++...+.   +...+..+...|.+.|++++|++.|++..+.++.+..+|..+..++.+.|++++|+..|
T Consensus        12 ~~e~ai~~~~~a~~~~p~---~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~   88 (150)
T 4ga2_A           12 DVERYIASVQGSTPSPRQ---KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECY   88 (150)
T ss_dssp             HHHHHHHHHHHHSCSHHH---HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hHHHHHHHHHHhcccCcc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHH
Confidence            677888888887332222   56677789999999999999999999999999889999999999999999999999999


Q ss_pred             HHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHH-HHHhhcCCCCCHHhHHHHHHHHHhcCC
Q 048269          132 HIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYL-ILKLSEWIKPNEIAYGWLIKGYCDVGD  192 (465)
Q Consensus       132 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~-~~~m~~~~~~~~~~~~~li~~~~~~g~  192 (465)
                      +...+.. +-+..++..+..+|.+.|+.++|.+. +++...-.|-++.+|......+...|+
T Consensus        89 ~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A           89 RRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             HHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred             HHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence            9999875 55788899999999999999877665 577664446677888877777777664

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.85  E-value=4.9e-07  Score=75.81  Aligned_cols=178  Identities=11%  Similarity=-0.023  Sum_probs=147.4

Q ss_pred             HHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCC----CHHHHHHHHH
Q 048269           92 LFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRK----LVVEAKYLIL  167 (465)
Q Consensus        92 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----~~~~a~~~~~  167 (465)
                      +|.+.|++..+.|  ++.++..+...+...+++++|+..|+...+.|   +...+..+...|.. +    +.++|.++|+
T Consensus         4 eA~~~~~~aa~~g--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~   77 (212)
T 3rjv_A            4 EPGSQYQQQAEAG--DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE   77 (212)
T ss_dssp             CTTHHHHHHHHTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred             hHHHHHHHHHHCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence            4677888887775  56688889999999999999999999999865   67778888888887 6    8999999999


Q ss_pred             HhhcCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-CcHHHHHHHHHHHHh----cCCHHHHHHHHHHH
Q 048269          168 KLSEWIKPNEIAYGWLIKGYCD----VGDLIEASKIWNLMTDEGFE-PSIDVVDKMIETFFK----INKDDEAMKVFQMM  238 (465)
Q Consensus       168 ~m~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m  238 (465)
                      +...  ..+...+..|...|..    .+++++|+.+|++..+.|.. .+...+..|...|..    .+++++|.+.|+..
T Consensus        78 ~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A  155 (212)
T 3rjv_A           78 KAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS  155 (212)
T ss_dssp             HHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred             HHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence            9873  3467788889888887    89999999999999987621 127788889999988    88999999999999


Q ss_pred             HHcCCCCCCcchHHHHHHHHHhc-C-----ChHHHHHHHHHHHHCCCC
Q 048269          239 RVKRMDDLGLSTYRIVIDWMCKR-G-----KISQAYTMLEEMFKRGIE  280 (465)
Q Consensus       239 ~~~~~~~~~~~~~~~li~~~~~~-~-----~~~~a~~~~~~m~~~~~~  280 (465)
                      .+.+  . +...+..|...|... |     +.++|..+|+...+.|..
T Consensus       156 ~~~~--~-~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~  200 (212)
T 3rjv_A          156 SSLS--R-TGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD  200 (212)
T ss_dssp             HHTS--C-TTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred             HHcC--C-CHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence            8762  2 556788888888754 3     899999999999988753

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.84  E-value=1.1e-05  Score=76.79  Aligned_cols=354  Identities=11%  Similarity=0.006  Sum_probs=218.7

Q ss_pred             CHHHHHHHHhcCC-CChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCC-hhHHHHHHHHHhhC-C--CCChHHHH
Q 048269           38 THEFFLQICNNFP-LSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRN-IDLFWETLQEMGRR-R--LVNDKTFK  112 (465)
Q Consensus        38 ~~~~~~~~l~~~~-~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~-~--~~~~~~~~  112 (465)
                      ....+...+..++ ++.+.+..+|+.+ ...   .|+...|...+....+.++ .+....+|+..... |  +.+...|.
T Consensus        14 aR~vyer~l~~~P~~~~e~~~~ifera-l~~---~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~   89 (493)
T 2uy1_A           14 PSAIMEHARRLYMSKDYRSLESLFGRC-LKK---SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYK   89 (493)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHH-STT---CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHH
T ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHHHH-hcc---CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHH
Confidence            3455566666666 4889999999998 332   3699999999998888774 45677788877653 3  45677888


Q ss_pred             HHHHHHH----hcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH-------------cCCCHHHHHHHHHHhhcCCC-
Q 048269          113 IALMTLA----EVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLC-------------QRKLVVEAKYLILKLSEWIK-  174 (465)
Q Consensus       113 ~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-------------~~~~~~~a~~~~~~m~~~~~-  174 (465)
                      ..+..+.    ..++.+.+..+|+.........-...|......-.             ..+.+..|..+++++....+ 
T Consensus        90 ~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~  169 (493)
T 2uy1_A           90 EYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRG  169 (493)
T ss_dssp             HHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Confidence            8777654    34678889999999987422111222222221110             01223344555555441111 


Q ss_pred             CCHHhHHHHHHHHHhcC--C-----HHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC
Q 048269          175 PNEIAYGWLIKGYCDVG--D-----LIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLG  247 (465)
Q Consensus       175 ~~~~~~~~li~~~~~~g--~-----~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~  247 (465)
                      .+...|...+.--...+  -     .+.+..+|+++.... +.+...|...+..+.+.|+.+.|.++++.....   |.+
T Consensus       170 ~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~  245 (493)
T 2uy1_A          170 WSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDG  245 (493)
T ss_dssp             CSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCS
T ss_pred             ccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCc
Confidence            13345655554432211  1     345778899888753 456888988888899999999999999999977   524


Q ss_pred             cchHHHHHHHHHhcCChHHHHHHHHHHHHCC---------CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCC--
Q 048269          248 LSTYRIVIDWMCKRGKISQAYTMLEEMFKRG---------IEA---DNLTLSSIIYGLLARGRLREAYKVVEEIEKPD--  313 (465)
Q Consensus       248 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---------~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--  313 (465)
                      ...|.    .|+...+.++.   ++.+.+.-         ..+   ....|...+..+.+.+..+.|..+|+....|.  
T Consensus       246 ~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~~~  318 (493)
T 2uy1_A          246 MFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELGNEGVG  318 (493)
T ss_dssp             SHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSCCC
T ss_pred             HHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhhCCCCC
Confidence            43332    23332222222   22222110         001   12446666777777888999999999993343  


Q ss_pred             HhhHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcCCHHHHH
Q 048269          314 ISLYHGLIKGLL-RLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAA  392 (465)
Q Consensus       314 ~~~~~~li~~~~-~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~  392 (465)
                      ...|......-. ..++.+.|..+|+...+.-  |+...+                      |...+....+.|+.+.|.
T Consensus       319 ~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~--~~~~~~----------------------~~~yid~e~~~~~~~~aR  374 (493)
T 2uy1_A          319 PHVFIYCAFIEYYATGSRATPYNIFSSGLLKH--PDSTLL----------------------KEEFFLFLLRIGDEENAR  374 (493)
T ss_dssp             HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC--TTCHHH----------------------HHHHHHHHHHHTCHHHHH
T ss_pred             hHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--CCCHHH----------------------HHHHHHHHHHcCCHHHHH
Confidence            233322111111 2346999999999988752  332221                      222344457889999999


Q ss_pred             HHHHHHHhCCCCCCHhhHHHHHHHHhhccchHHHHHHHHHHHH
Q 048269          393 KYVERVMNRGVEVPRFDYNKFLHYYSNEEGVVMFEEVGKKLRE  435 (465)
Q Consensus       393 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  435 (465)
                      .+|+++.     .....|...+.--...|+.+.+..++++..+
T Consensus       375 ~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~  412 (493)
T 2uy1_A          375 ALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD  412 (493)
T ss_dssp             HHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            9999973     2456788888777778999999998888774

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.79  E-value=2.1e-07  Score=74.42  Aligned_cols=94  Identities=3%  Similarity=-0.166  Sum_probs=49.3

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHc
Q 048269           76 TFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQ  155 (465)
Q Consensus        76 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~  155 (465)
                      .+..+...+...|++++|...|++..+..+.+..++..+...+...|++++|+..++...+.. +.+...+..+..++..
T Consensus        15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~   93 (166)
T 1a17_A           15 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA   93 (166)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence            344455555555555555555555555444445555555555555555555555555555432 2344444455555555


Q ss_pred             CCCHHHHHHHHHHhh
Q 048269          156 RKLVVEAKYLILKLS  170 (465)
Q Consensus       156 ~~~~~~a~~~~~~m~  170 (465)
                      .|++++|...|++..
T Consensus        94 ~~~~~~A~~~~~~a~  108 (166)
T 1a17_A           94 LGKFRAALRDYETVV  108 (166)
T ss_dssp             TTCHHHHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHH
Confidence            555555555555544

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.78  E-value=1.7e-07  Score=83.77  Aligned_cols=174  Identities=13%  Similarity=0.047  Sum_probs=95.7

Q ss_pred             cCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCCC-CHHHHHHHHHHHHcCCCHHH
Q 048269           87 SRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDC----GCEY-SLEMLNKVVKTLCQRKLVVE  161 (465)
Q Consensus        87 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~~~  161 (465)
                      .+++++|...|+..              ...|...|++++|...|.+..+.    +-.. -..+|+.+..+|...|++++
T Consensus        29 ~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~   94 (307)
T 2ifu_A           29 KPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPE   94 (307)
T ss_dssp             SCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred             CCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHH
Confidence            35555555555543              34566677777777777766542    1001 13356666677777777777


Q ss_pred             HHHHHHHhh---cC-CCC--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-cHHHHHHHHHHHHhcCCHHH
Q 048269          162 AKYLILKLS---EW-IKP--NEIAYGWLIKGYCDVGDLIEASKIWNLMTDE----GFEP-SIDVVDKMIETFFKINKDDE  230 (465)
Q Consensus       162 a~~~~~~m~---~~-~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~  230 (465)
                      |+..|++..   .. -.+  -..++..+...|.. |++++|+..|++..+.    |-.. ...++..+...|.+.|++++
T Consensus        95 A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~  173 (307)
T 2ifu_A           95 AVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDE  173 (307)
T ss_dssp             GHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHH
Confidence            777777654   11 011  13455566666666 7777777666665542    1000 13455666666666677777


Q ss_pred             HHHHHHHHHHcC----CCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 048269          231 AMKVFQMMRVKR----MDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMF  275 (465)
Q Consensus       231 A~~~~~~m~~~~----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  275 (465)
                      |++.|++.....    ..+....++..+..++...|++++|...|++..
T Consensus       174 A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al  222 (307)
T 2ifu_A          174 AAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY  222 (307)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            666666655421    000001234444555555666666666666665

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.76  E-value=4.4e-06  Score=74.44  Aligned_cols=172  Identities=9%  Similarity=-0.085  Sum_probs=104.8

Q ss_pred             CChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcC-CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcC-C-CHHHHHH
Q 048269           88 RNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVR-ELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQR-K-LVVEAKY  164 (465)
Q Consensus        88 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~-~~~~a~~  164 (465)
                      +..++|+++++.+...++.+..+|+.--..+...+ .+++++++++.+.... +-+..+|+.-..++.+. + +.+++++
T Consensus        68 e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~  146 (349)
T 3q7a_A           68 EKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEIE  146 (349)
T ss_dssp             CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred             CCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence            33456777777777666666666666666666666 4777777777776654 44556666655555544 4 6667777


Q ss_pred             HHHHhhcCCCCCHHhHHHHHHHHHhcCCHH--------HHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCC-------HH
Q 048269          165 LILKLSEWIKPNEIAYGWLIKGYCDVGDLI--------EASKIWNLMTDEGFEPSIDVVDKMIETFFKINK-------DD  229 (465)
Q Consensus       165 ~~~~m~~~~~~~~~~~~~li~~~~~~g~~~--------~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-------~~  229 (465)
                      +++++....+.|..+|+.-.-...+.|.++        ++++.++++.+... -|...|+-....+.+.++       ++
T Consensus       147 ~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~~~~~~~~~~~  225 (349)
T 3q7a_A          147 YIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRPGAETSSRSLQ  225 (349)
T ss_dssp             HHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTSTTCCCCHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccccchHHHH
Confidence            777766555556666665544444444444        66677776666542 356666666666666554       56


Q ss_pred             HHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCC
Q 048269          230 EAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGK  263 (465)
Q Consensus       230 ~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~  263 (465)
                      ++++.+++....  .|.|...|+-+-..+.+.|.
T Consensus       226 eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~  257 (349)
T 3q7a_A          226 DELIYILKSIHL--IPHNVSAWNYLRGFLKHFSL  257 (349)
T ss_dssp             HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCC
Confidence            677777666654  44466666666555555554

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.75  E-value=3.3e-07  Score=69.06  Aligned_cols=113  Identities=12%  Similarity=-0.039  Sum_probs=67.2

Q ss_pred             HHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 048269           74 SITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTL  153 (465)
Q Consensus        74 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~  153 (465)
                      ...+..+...+...|++++|.+.++++.+..+.+..++..+...+.+.|++++|+..|+.+.+.. +.+..++..+..++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~   87 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY   87 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence            45566666666667777777777766666555555566666666666666666666666665543 34455556666666


Q ss_pred             HcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHH
Q 048269          154 CQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGY  187 (465)
Q Consensus       154 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~  187 (465)
                      ...|++++|...++++....+.+...+..+...+
T Consensus        88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  121 (125)
T 1na0_A           88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK  121 (125)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            6666666666666665522233444444444333

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.75  E-value=2.4e-07  Score=70.43  Aligned_cols=108  Identities=10%  Similarity=-0.064  Sum_probs=70.0

Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 048269           75 ITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLC  154 (465)
Q Consensus        75 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~  154 (465)
                      ..+......+.+.|++++|++.|++..+.++.+..+|..+..++.+.|++++|+..|+...+.. +.+...|..+..++.
T Consensus        14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~   92 (126)
T 4gco_A           14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV   92 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence            3455556667777777777777777776666666677777777777777777777777766654 445666666667777


Q ss_pred             cCCCHHHHHHHHHHhhcCCCCCHHhHHHH
Q 048269          155 QRKLVVEAKYLILKLSEWIKPNEIAYGWL  183 (465)
Q Consensus       155 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~l  183 (465)
                      ..|++++|++.|++...-.|-+...+..|
T Consensus        93 ~~~~~~~A~~~~~~al~l~P~~~~a~~~l  121 (126)
T 4gco_A           93 AMREWSKAQRAYEDALQVDPSNEEAREGV  121 (126)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHCcCCHHHHHHH
Confidence            77777777777776653234444444433

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.75  E-value=7.7e-07  Score=74.55  Aligned_cols=127  Identities=6%  Similarity=-0.099  Sum_probs=91.5

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHc
Q 048269           76 TFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQ  155 (465)
Q Consensus        76 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~  155 (465)
                      .+..+...+...|++++|...|++...   ++..++..+...+.+.|++++|+..|+...+.. +.+...+..+..++..
T Consensus         8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~   83 (213)
T 1hh8_A            8 SLWNEGVLAADKKDWKGALDAFSAVQD---PHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ   83 (213)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTSSS---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHcC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence            345566677777888888888877642   356677777888888888888888888777654 4566777777778888


Q ss_pred             CCCHHHHHHHHHHhhcCCCCCH----------------HhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048269          156 RKLVVEAKYLILKLSEWIKPNE----------------IAYGWLIKGYCDVGDLIEASKIWNLMTDE  206 (465)
Q Consensus       156 ~~~~~~a~~~~~~m~~~~~~~~----------------~~~~~li~~~~~~g~~~~a~~~~~~m~~~  206 (465)
                      .|++++|+..|++.....+.+.                ..+..+..+|...|++++|...|+...+.
T Consensus        84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  150 (213)
T 1hh8_A           84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM  150 (213)
T ss_dssp             TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence            8888888888877763223322                66777777777778888888888777765

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.75  E-value=6e-06  Score=73.59  Aligned_cols=222  Identities=7%  Similarity=-0.019  Sum_probs=168.9

Q ss_pred             CChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcC-ChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhc-C-CHHHH
Q 048269           51 LSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSR-NIDLFWETLQEMGRRRLVNDKTFKIALMTLAEV-R-ELKKM  127 (465)
Q Consensus        51 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~a  127 (465)
                      ...+.|+++++.++...+.   +..+|+.--.++...| .++++++.++.+...++.+..+|+.-...+.+. + +++++
T Consensus        68 e~se~AL~lt~~~L~~nP~---~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~E  144 (349)
T 3q7a_A           68 EKSERALELTEIIVRMNPA---HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSE  144 (349)
T ss_dssp             CCSHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHH
T ss_pred             CCCHHHHHHHHHHHHhCch---hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHH
Confidence            3556799999999888877   8889999888888888 599999999999999998989999888888777 7 89999


Q ss_pred             HHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHH--------HHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCC-------
Q 048269          128 VNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVV--------EAKYLILKLSEWIKPNEIAYGWLIKGYCDVGD-------  192 (465)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~--------~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~-------  192 (465)
                      +++++.+.+.. +.|..+|+.-..++.+.|.++        ++++.++++....+-|..+|+.....+.+.+.       
T Consensus       145 L~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~  223 (349)
T 3q7a_A          145 IEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRS  223 (349)
T ss_dssp             HHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred             HHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHH
Confidence            99999999875 668888887666666666565        89999999885567789999998888888876       


Q ss_pred             HHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHHcC----CCCCCc
Q 048269          193 LIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKD--------------------DEAMKVFQMMRVKR----MDDLGL  248 (465)
Q Consensus       193 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~m~~~~----~~~~~~  248 (465)
                      ++++++.++.+.... +-|...|+-+-..+.+.|+.                    ....++..++...+    ..+.++
T Consensus       224 ~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  302 (349)
T 3q7a_A          224 LQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVP  302 (349)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCH
T ss_pred             HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcH
Confidence            688999998888764 34777887776666666553                    23333333333221    113366


Q ss_pred             chHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 048269          249 STYRIVIDWMCKRGKISQAYTMLEEMFKR  277 (465)
Q Consensus       249 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~  277 (465)
                      .....++..|...|+.++|.++++.+.+.
T Consensus       303 ~al~~l~d~~~~~~~~~~a~~~~~~l~~~  331 (349)
T 3q7a_A          303 LALEYLADSFIEQNRVDDAAKVFEKLSSE  331 (349)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence            77778888888888888888888887644

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.74  E-value=2.6e-07  Score=70.68  Aligned_cols=120  Identities=8%  Similarity=-0.092  Sum_probs=77.7

Q ss_pred             CCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 048269           71 AHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVV  150 (465)
Q Consensus        71 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll  150 (465)
                      ..+...|..+...+.+.|++++|...|++..+..+.+..++..+...+...|++++|+..++...+.. +.+...+..+.
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la   91 (133)
T 2lni_A           13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKA   91 (133)
T ss_dssp             SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence            34566677777777777777777777777776666566677777777777777777777777766653 34566666666


Q ss_pred             HHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcC
Q 048269          151 KTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVG  191 (465)
Q Consensus       151 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g  191 (465)
                      .++...|++++|.+.|++.....+.+...+..+...+...|
T Consensus        92 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~  132 (133)
T 2lni_A           92 AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY  132 (133)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred             HHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence            67777777777777777665222333444555555544433

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.74  E-value=9.7e-07  Score=73.92  Aligned_cols=89  Identities=13%  Similarity=-0.057  Sum_probs=41.7

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCC
Q 048269          113 IALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGD  192 (465)
Q Consensus       113 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~  192 (465)
                      .+...+...|++++|+..|+...    .|+...+..+..++...|++++|+..|++.....+.+...+..+..+|...|+
T Consensus        11 ~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~   86 (213)
T 1hh8_A           11 NEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEK   86 (213)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHccc
Confidence            33444444555555555554442    33444444455555555555555555554442223344444444444444444


Q ss_pred             HHHHHHHHHHHHH
Q 048269          193 LIEASKIWNLMTD  205 (465)
Q Consensus       193 ~~~a~~~~~~m~~  205 (465)
                      +++|...|+...+
T Consensus        87 ~~~A~~~~~~al~   99 (213)
T 1hh8_A           87 YDLAIKDLKEALI   99 (213)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            4444444444444

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.74  E-value=5.2e-08  Score=85.78  Aligned_cols=97  Identities=5%  Similarity=-0.113  Sum_probs=56.2

Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 048269           73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKT  152 (465)
Q Consensus        73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~  152 (465)
                      +...+..+...+.+.|++++|+..|++..+..+.+...+..+..++.+.|++++|+..++...+.. +.+...+..+..+
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~   81 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC   81 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence            344555555666666666666666666655555555556666666666666666666666655543 3345555555555


Q ss_pred             HHcCCCHHHHHHHHHHhh
Q 048269          153 LCQRKLVVEAKYLILKLS  170 (465)
Q Consensus       153 ~~~~~~~~~a~~~~~~m~  170 (465)
                      +...|++++|+..|++..
T Consensus        82 ~~~~g~~~~A~~~~~~al   99 (281)
T 2c2l_A           82 QLEMESYDEAIANLQRAY   99 (281)
T ss_dssp             HHHTTCHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHH
Confidence            556666666665555544

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.74  E-value=1.8e-06  Score=76.41  Aligned_cols=159  Identities=11%  Similarity=0.094  Sum_probs=101.5

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCC-CCCcH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCc----chHHH
Q 048269          183 LIKGYCDVGDLIEASKIWNLMTDEG-FEPSI----DVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGL----STYRI  253 (465)
Q Consensus       183 li~~~~~~g~~~~a~~~~~~m~~~g-~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~----~~~~~  253 (465)
                      .+..+...|++++|...++...+.. ..|+.    ..+..+...+...|++++|++.|++.........+.    .+++.
T Consensus        81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~  160 (293)
T 3u3w_A           81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA  160 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence            3556677777777777777776532 12221    123345566666677788888777777643222121    25777


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHH----C-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhcC--------C-CHhhHH
Q 048269          254 VIDWMCKRGKISQAYTMLEEMFK----R-GIEA-DNLTLSSIIYGLLARGRLREAYKVVEEIEK--------P-DISLYH  318 (465)
Q Consensus       254 li~~~~~~~~~~~a~~~~~~m~~----~-~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--------~-~~~~~~  318 (465)
                      +...|...|++++|...|+++.+    . +..+ ...++..+...|.+.|++++|...+++..+        . -...|.
T Consensus       161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~  240 (293)
T 3u3w_A          161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY  240 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence            77777788888888887777663    1 1111 123566777778888888888887777665        1 145677


Q ss_pred             HHHHHHHhcCC-HHHHHHHHHHHH
Q 048269          319 GLIKGLLRLRR-AREATQVFREMI  341 (465)
Q Consensus       319 ~li~~~~~~~~-~~~a~~~~~~m~  341 (465)
                      .+..+|.+.|+ +++|.+.|++..
T Consensus       241 ~lg~~~~~~g~~~~~A~~~~~~Al  264 (293)
T 3u3w_A          241 QRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHH
Confidence            77777888884 588888877765

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.73  E-value=2.9e-07  Score=82.15  Aligned_cols=189  Identities=10%  Similarity=0.001  Sum_probs=135.4

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHhhCCC----C--ChHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCCC-CHH
Q 048269           76 TFNRMVDIIGKSRNIDLFWETLQEMGRRRL----V--NDKTFKIALMTLAEVRELKKMVNFFHIMNDC----GCEY-SLE  144 (465)
Q Consensus        76 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~  144 (465)
                      .|+.....|...|++++|...|.+..+...    +  ...+|..+...|.+.|++++|+..|++..+.    |-.. ...
T Consensus        38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~  117 (307)
T 2ifu_A           38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAM  117 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            344456788899999999999988765322    1  1357888999999999999999999987653    2111 245


Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHhh---cCCC-C--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCc-HH
Q 048269          145 MLNKVVKTLCQRKLVVEAKYLILKLS---EWIK-P--NEIAYGWLIKGYCDVGDLIEASKIWNLMTDE----GFEPS-ID  213 (465)
Q Consensus       145 ~~~~ll~~~~~~~~~~~a~~~~~~m~---~~~~-~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~~-~~  213 (465)
                      +++.+..+|.. |++++|+..|++..   .... +  ...++..+...|.+.|++++|+..|++..+.    +..+. ..
T Consensus       118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  196 (307)
T 2ifu_A          118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYK  196 (307)
T ss_dssp             HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHH
Confidence            67888889988 99999999999976   1111 1  1467888999999999999999999998763    22222 23


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcc-----hHHHHHHHHHhcCChHHHHH
Q 048269          214 VVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLS-----TYRIVIDWMCKRGKISQAYT  269 (465)
Q Consensus       214 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-----~~~~li~~~~~~~~~~~a~~  269 (465)
                      .+..+..++...|++++|...|++.. .  .|....     ....++.++ ..|+.+.+..
T Consensus       197 ~~~~~g~~~~~~g~~~~A~~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~  253 (307)
T 2ifu_A          197 KCIAQVLVQLHRADYVAAQKCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLR  253 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence            67777788888899999999999987 4  341111     233344444 4566655544

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.71  E-value=3.3e-07  Score=69.71  Aligned_cols=119  Identities=12%  Similarity=-0.091  Sum_probs=66.7

Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 048269           73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKT  152 (465)
Q Consensus        73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~  152 (465)
                      +...+..+...+...|++++|...|++.....+.+..++..+...+...|++++|+..++...+.. +.+...+..+..+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~   89 (131)
T 2vyi_A           11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA   89 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence            344555556666666666666666666655555455556666666666666666666666655543 3345555555555


Q ss_pred             HHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCC
Q 048269          153 LCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGD  192 (465)
Q Consensus       153 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~  192 (465)
                      +...|++++|...|++.....+.+...+..+..++...|+
T Consensus        90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  129 (131)
T 2vyi_A           90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE  129 (131)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred             HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence            6666666666666655552223344455555555544443

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.70  E-value=1.1e-06  Score=75.66  Aligned_cols=190  Identities=7%  Similarity=-0.144  Sum_probs=101.4

Q ss_pred             hcCChhHHHHHHHHHhhCCCCChHHHHHH-------HHHHHhcCCHHHHHHHHHHhhh------------CCCC------
Q 048269           86 KSRNIDLFWETLQEMGRRRLVNDKTFKIA-------LMTLAEVRELKKMVNFFHIMND------------CGCE------  140 (465)
Q Consensus        86 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~------------~~~~------  140 (465)
                      ..++...|.+.|.++.+.++-....|..+       ...+.+.++..+++..+..-.+            .|.-      
T Consensus        18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~   97 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP   97 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE
T ss_pred             cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccc
Confidence            35666666666666666666555566555       3444444444555544444433            1100      


Q ss_pred             --CCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--cHHHHH
Q 048269          141 --YSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEP--SIDVVD  216 (465)
Q Consensus       141 --~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~--~~~~~~  216 (465)
                        --...+-.+...+...|++++|.++|+.+..+.+-+. ....+...+.+.+++++|+..|+...+.. .|  ....+.
T Consensus        98 v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~  175 (282)
T 4f3v_A           98 VTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGV  175 (282)
T ss_dssp             CSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHH
T ss_pred             cCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHH
Confidence              0012233344556666667777666666653222222 44445556666667777766666443321 11  123455


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-CcchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 048269          217 KMIETFFKINKDDEAMKVFQMMRVKRMDDL-GLSTYRIVIDWMCKRGKISQAYTMLEEMFKR  277 (465)
Q Consensus       217 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  277 (465)
                      .+..++.+.|++++|++.|++.......|. ..........++.+.|+.++|..+|+++...
T Consensus       176 ~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~  237 (282)
T 4f3v_A          176 AHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT  237 (282)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            666666666777777777666653322131 1224445555666666667777766666654

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.69  E-value=3e-06  Score=75.01  Aligned_cols=163  Identities=10%  Similarity=0.044  Sum_probs=104.4

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCc-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC----cc
Q 048269          179 AYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPS-----IDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLG----LS  249 (465)
Q Consensus       179 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~  249 (465)
                      .+...+..+...|++++|.+.+....+......     ...+..+...+...|++++|.+.+++.........+    ..
T Consensus        77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  156 (293)
T 2qfc_A           77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY  156 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence            444556667777777777777776665422111     122334555566777888888888777643221111    23


Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHH---C-CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHhcC--CC-------H
Q 048269          250 TYRIVIDWMCKRGKISQAYTMLEEMFK---R-GIEA--DNLTLSSIIYGLLARGRLREAYKVVEEIEK--PD-------I  314 (465)
Q Consensus       250 ~~~~li~~~~~~~~~~~a~~~~~~m~~---~-~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~-------~  314 (465)
                      +++.+...|...|++++|...|++..+   . +..+  ...++..+...|.+.|++++|...+++..+  ++       .
T Consensus       157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~  236 (293)
T 2qfc_A          157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG  236 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            677777788888888888888877662   1 1111  124677777788888888888888877655  11       4


Q ss_pred             hhHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 048269          315 SLYHGLIKGLLRLRRAREA-TQVFREMI  341 (465)
Q Consensus       315 ~~~~~li~~~~~~~~~~~a-~~~~~~m~  341 (465)
                      .+|..+...|.+.|++++| ...+++..
T Consensus       237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al  264 (293)
T 2qfc_A          237 QLYYQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence            5677777788888888888 66676654

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.69  E-value=3.3e-07  Score=78.92  Aligned_cols=190  Identities=7%  Similarity=-0.080  Sum_probs=147.4

Q ss_pred             CCCChhHHHHHHHHHhhcCCCCCCCHHhHHHH-------HHHHHhcCChhHHHHHHHHHhh------------CCC----
Q 048269           49 FPLSWRPVYLFFQYTQKAQPCFAHNSITFNRM-------VDIIGKSRNIDLFWETLQEMGR------------RRL----  105 (465)
Q Consensus        49 ~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~a~~~~~~~~~------------~~~----  105 (465)
                      .+.++..|++.|..++..+|+   ....|+.+       ..++.+.++..++...+..-..            .|.    
T Consensus        18 ~~~d~~~A~~~F~~a~~~dP~---~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~   94 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNYDES---ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDI   94 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCC
T ss_pred             cCCCHHHHHHHHHHHHHhChh---hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccc
Confidence            456899999999999888888   88999888       5777777777777777766555            221    


Q ss_pred             ----CC-hHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCC--HH
Q 048269          106 ----VN-DKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPN--EI  178 (465)
Q Consensus       106 ----~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~--~~  178 (465)
                          .+ ..........+...|++++|.++|+.+...+  |+......+...+.+.+++++|+..|+....-..|.  ..
T Consensus        95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~  172 (282)
T 4f3v_A           95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA  172 (282)
T ss_dssp             EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred             ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence                01 2345567788899999999999999998754  444366666778999999999999998665321221  34


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 048269          179 AYGWLIKGYCDVGDLIEASKIWNLMTDEGFEP--SIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDD  245 (465)
Q Consensus       179 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~  245 (465)
                      .+..+..++...|++++|+..|++.......|  ..........++.+.|+.++|..+|+++...  .|
T Consensus       173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P  239 (282)
T 4f3v_A          173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HP  239 (282)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SC
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CC
Confidence            67888999999999999999999998654325  3456777888899999999999999999987  55

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.67  E-value=9.5e-07  Score=70.51  Aligned_cols=127  Identities=9%  Similarity=-0.027  Sum_probs=77.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHh
Q 048269          110 TFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCD  189 (465)
Q Consensus       110 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~  189 (465)
                      .+..+...+...|++++|...|+...+.. +.+..++..+..++...|++++|...+++.....+.+..++..+...+..
T Consensus        15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~   93 (166)
T 1a17_A           15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA   93 (166)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            45566666677777777777777766643 34566666666667777777777777776663334556666666666666


Q ss_pred             cCCHHHHHHHHHHHHHCCCCCcHHHH--HHHHHHHHhcCCHHHHHHHHHHH
Q 048269          190 VGDLIEASKIWNLMTDEGFEPSIDVV--DKMIETFFKINKDDEAMKVFQMM  238 (465)
Q Consensus       190 ~g~~~~a~~~~~~m~~~g~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m  238 (465)
                      .|++++|...|++..+.. +.+...+  ..++..+.+.|++++|.+.+...
T Consensus        94 ~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  143 (166)
T 1a17_A           94 LGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK  143 (166)
T ss_dssp             TTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence            677777777666666542 1133333  22333355566666666666544

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.66  E-value=1.1e-07  Score=77.19  Aligned_cols=120  Identities=12%  Similarity=0.052  Sum_probs=64.4

Q ss_pred             hcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH-HHcCCCH--HHH
Q 048269           86 KSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKT-LCQRKLV--VEA  162 (465)
Q Consensus        86 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~~~~--~~a  162 (465)
                      ..|++++|...++...+.++.+..++..+...+...|++++|+..|+...+.. +.+...+..+..+ +...|++  ++|
T Consensus        22 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A  100 (177)
T 2e2e_A           22 SQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQT  100 (177)
T ss_dssp             -----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred             hccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHH
Confidence            34555566666666555555555556666666666666666666666555543 2344455555555 4455555  666


Q ss_pred             HHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048269          163 KYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDE  206 (465)
Q Consensus       163 ~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  206 (465)
                      ...+++.....+.+...+..+...|...|++++|...|+.+.+.
T Consensus       101 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  144 (177)
T 2e2e_A          101 RAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL  144 (177)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence            66666555223344555555555566666666666666655554

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.65  E-value=4.1e-07  Score=71.37  Aligned_cols=99  Identities=8%  Similarity=-0.003  Sum_probs=63.8

Q ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHH
Q 048269          107 NDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKG  186 (465)
Q Consensus       107 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~  186 (465)
                      +...+..+...+.+.|++++|+..|+...+.. +.+...|..+..+|...|++++|+..|++...-.+.+...|..+..+
T Consensus        35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~  113 (151)
T 3gyz_A           35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQC  113 (151)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHH
Confidence            34456666666666677777777776666654 44566666666666666777777776666663334555666666666


Q ss_pred             HHhcCCHHHHHHHHHHHHHC
Q 048269          187 YCDVGDLIEASKIWNLMTDE  206 (465)
Q Consensus       187 ~~~~g~~~~a~~~~~~m~~~  206 (465)
                      |...|++++|...|+...+.
T Consensus       114 ~~~lg~~~eA~~~~~~al~l  133 (151)
T 3gyz_A          114 QLRLKAPLKAKECFELVIQH  133 (151)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHh
Confidence            66777777777777666664

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.64  E-value=1.7e-07  Score=73.60  Aligned_cols=97  Identities=6%  Similarity=-0.102  Sum_probs=88.4

Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 048269           73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKT  152 (465)
Q Consensus        73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~  152 (465)
                      +...+..+...+.+.|++++|+..|+.....++.+...|..+..++...|++++|+..|+...+.. +.+...|..+..+
T Consensus        35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~  113 (151)
T 3gyz_A           35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQC  113 (151)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence            566788888899999999999999999999998889999999999999999999999999999875 5567888899999


Q ss_pred             HHcCCCHHHHHHHHHHhh
Q 048269          153 LCQRKLVVEAKYLILKLS  170 (465)
Q Consensus       153 ~~~~~~~~~a~~~~~~m~  170 (465)
                      |...|++++|+..|++..
T Consensus       114 ~~~lg~~~eA~~~~~~al  131 (151)
T 3gyz_A          114 QLRLKAPLKAKECFELVI  131 (151)
T ss_dssp             HHHTTCHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHH
Confidence            999999999999999987

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.64  E-value=4.3e-07  Score=75.36  Aligned_cols=51  Identities=8%  Similarity=-0.001  Sum_probs=21.6

Q ss_pred             hcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048269           86 KSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMND  136 (465)
Q Consensus        86 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  136 (465)
                      ..|++++|.++++.+.........++..+...+...|++++|+..+++..+
T Consensus         4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~   54 (203)
T 3gw4_A            4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQ   54 (203)
T ss_dssp             ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence            345555555533333221112234445555555555555555555554443

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.64  E-value=1.1e-06  Score=72.84  Aligned_cols=156  Identities=8%  Similarity=-0.108  Sum_probs=84.2

Q ss_pred             hcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhc------CCCCCHHhHHHHHHHHHhcCCH
Q 048269          120 EVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSE------WIKPNEIAYGWLIKGYCDVGDL  193 (465)
Q Consensus       120 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~------~~~~~~~~~~~li~~~~~~g~~  193 (465)
                      ..|++++|.+.++.+... ......++..+...+...|++++|...+++...      ..+....++..+...|...|++
T Consensus         4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~   82 (203)
T 3gw4_A            4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW   82 (203)
T ss_dssp             ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence            456666666644443331 123445566666666666777777666666541      1122344556666666666777


Q ss_pred             HHHHHHHHHHHHC----CCCC--cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCCcchHHHHHHHHHhcCC
Q 048269          194 IEASKIWNLMTDE----GFEP--SIDVVDKMIETFFKINKDDEAMKVFQMMRVK----RMDDLGLSTYRIVIDWMCKRGK  263 (465)
Q Consensus       194 ~~a~~~~~~m~~~----g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~~~~~~~~li~~~~~~~~  263 (465)
                      ++|...+++..+.    |-.+  ....+..+...+...|++++|.+.+++....    +.......++..+...+...|+
T Consensus        83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~  162 (203)
T 3gw4_A           83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN  162 (203)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence            7766666665442    2111  2344566666666667777776666665421    1111012335566666666777


Q ss_pred             hHHHHHHHHHHHH
Q 048269          264 ISQAYTMLEEMFK  276 (465)
Q Consensus       264 ~~~a~~~~~~m~~  276 (465)
                      +++|...+++..+
T Consensus       163 ~~~A~~~~~~al~  175 (203)
T 3gw4_A          163 LLEAQQHWLRARD  175 (203)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            7777666665553

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.63  E-value=0.00018  Score=68.36  Aligned_cols=310  Identities=7%  Similarity=-0.011  Sum_probs=188.2

Q ss_pred             CChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCC-HHHHHHHHHHhhh-CCC-CCCHHHHHHHHHHHHc----CCCHH
Q 048269           88 RNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRE-LKKMVNFFHIMND-CGC-EYSLEMLNKVVKTLCQ----RKLVV  160 (465)
Q Consensus        88 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~-~~~-~~~~~~~~~ll~~~~~----~~~~~  160 (465)
                      |+++.+..+|++.... .|+...|...+....+.+. .+....+|+.... .|. ..+...|...+..+..    .++.+
T Consensus        28 ~~~e~~~~iferal~~-~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~  106 (493)
T 2uy1_A           28 KDYRSLESLFGRCLKK-SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIE  106 (493)
T ss_dssp             TCHHHHHHHHHHHSTT-CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHH
T ss_pred             CCHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHH
Confidence            8899999999999874 4688889888888877764 4556778887665 343 3467888888876543    46788


Q ss_pred             HHHHHHHHhhcCCCCC--HHhHHHHHHHHH-------------hcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhc
Q 048269          161 EAKYLILKLSEWIKPN--EIAYGWLIKGYC-------------DVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKI  225 (465)
Q Consensus       161 ~a~~~~~~m~~~~~~~--~~~~~~li~~~~-------------~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~  225 (465)
                      .+.++|++... +++.  ...|......-.             ..+.+..|..+++.+...--..+...|...+..-...
T Consensus       107 ~vR~iy~rAL~-~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~  185 (493)
T 2uy1_A          107 KIRNGYMRALQ-TPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMEN  185 (493)
T ss_dssp             HHHHHHHHHHT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHh-ChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcC
Confidence            89999999874 2222  112221111100             0122333444444443210001344666655543322


Q ss_pred             C--C-----HHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048269          226 N--K-----DDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGR  298 (465)
Q Consensus       226 g--~-----~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~  298 (465)
                      +  -     .+.+..+|+++...  .|.+...|-..+.-+.+.|+.+.|..++++....  +.+...+.    .|....+
T Consensus       186 ~~~~~~~~~~~Rv~~~ye~al~~--~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e  257 (493)
T 2uy1_A          186 GMKLGGRPHESRMHFIHNYILDS--FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMD  257 (493)
T ss_dssp             TTCCCHHHHHHHHHHHHHHHHHH--TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTT
T ss_pred             CccCcchhhHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcc
Confidence            1  1     34567889988875  3436788888888889999999999999999987  33333222    2222211


Q ss_pred             HHHHH-HHHHHhc----------C--CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccCC
Q 048269          299 LREAY-KVVEEIE----------K--PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGR  365 (465)
Q Consensus       299 ~~~a~-~~~~~~~----------~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~  365 (465)
                      .++.. .+.+...          .  .....|...+....+.++.+.|..+|.+. ... ..+...|...          
T Consensus       258 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~----------  325 (493)
T 2uy1_A          258 EEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYC----------  325 (493)
T ss_dssp             CTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHH----------
T ss_pred             hhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHH----------
Confidence            11211 1221110          0  12245666667777788899999999998 321 1233333211          


Q ss_pred             CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHhhccchHHHHHHHHHH
Q 048269          366 KGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVP-RFDYNKFLHYYSNEEGVVMFEEVGKKL  433 (465)
Q Consensus       366 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~  433 (465)
                                 +.+.. ...++.+.|..+|+...+. . |+ ...|...++-..+.|+.+.|..+++++
T Consensus       326 -----------A~lE~-~~~~d~~~ar~ife~al~~-~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~  380 (493)
T 2uy1_A          326 -----------AFIEY-YATGSRATPYNIFSSGLLK-H-PDSTLLKEEFFLFLLRIGDEENARALFKRL  380 (493)
T ss_dssp             -----------HHHHH-HHHCCSHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred             -----------HHHHH-HHCCChHHHHHHHHHHHHH-C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence                       11111 2234799999999999874 2 43 446666777777889999999999887

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.62  E-value=7.6e-07  Score=69.78  Aligned_cols=97  Identities=7%  Similarity=-0.090  Sum_probs=69.8

Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 048269           73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKT  152 (465)
Q Consensus        73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~  152 (465)
                      +...+..+...+.+.|++++|+..|+.....++.+...|..+..++...|++++|+..|+...... +.+...+..+..+
T Consensus        20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~   98 (148)
T 2vgx_A           20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAEC   98 (148)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence            455566667777777777777777777777776677777777777777777777777777777654 4455666667777


Q ss_pred             HHcCCCHHHHHHHHHHhh
Q 048269          153 LCQRKLVVEAKYLILKLS  170 (465)
Q Consensus       153 ~~~~~~~~~a~~~~~~m~  170 (465)
                      |...|++++|+..|++..
T Consensus        99 ~~~~g~~~~A~~~~~~al  116 (148)
T 2vgx_A           99 LLQXGELAEAESGLFLAQ  116 (148)
T ss_dssp             HHHTTCHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHH
Confidence            777777777777777765

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.61  E-value=1.8e-06  Score=64.95  Aligned_cols=95  Identities=14%  Similarity=0.055  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHh
Q 048269          110 TFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCD  189 (465)
Q Consensus       110 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~  189 (465)
                      ++..+...+...|++++|++.|+.+.+.. +.+..++..+..++...|++++|..+++++....+.+..++..+...+..
T Consensus        11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~   89 (125)
T 1na0_A           11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK   89 (125)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence            34444444555555555555555544432 22344444444444444455555444444442223334444444444444


Q ss_pred             cCCHHHHHHHHHHHHH
Q 048269          190 VGDLIEASKIWNLMTD  205 (465)
Q Consensus       190 ~g~~~~a~~~~~~m~~  205 (465)
                      .|++++|...|+.+.+
T Consensus        90 ~~~~~~A~~~~~~~~~  105 (125)
T 1na0_A           90 QGDYDEAIEYYQKALE  105 (125)
T ss_dssp             TTCHHHHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHH
Confidence            4444444444444443

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.61  E-value=1.1e-06  Score=66.79  Aligned_cols=90  Identities=8%  Similarity=-0.077  Sum_probs=35.6

Q ss_pred             HHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCH
Q 048269          149 VVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKD  228 (465)
Q Consensus       149 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~  228 (465)
                      ....|.+.|++++|++.|++.....+.+..+|..+..+|.+.|++++|+..|+...+.. +.+...|..+..++...|++
T Consensus        19 ~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~   97 (126)
T 4gco_A           19 KGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVAMREW   97 (126)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHCCCH
Confidence            33334444444444444444332223333444444444444444444444444443321 11233344444444444444


Q ss_pred             HHHHHHHHHHH
Q 048269          229 DEAMKVFQMMR  239 (465)
Q Consensus       229 ~~A~~~~~~m~  239 (465)
                      ++|.+.|++..
T Consensus        98 ~~A~~~~~~al  108 (126)
T 4gco_A           98 SKAQRAYEDAL  108 (126)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            44444444443

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.61  E-value=1.9e-07  Score=73.25  Aligned_cols=97  Identities=8%  Similarity=-0.126  Sum_probs=47.2

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHH
Q 048269          108 DKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGY  187 (465)
Q Consensus       108 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~  187 (465)
                      ...+..+...+.+.|++++|+..|+...... +.+...|..+..+|...|++++|+..|++.....+.+...+..+..+|
T Consensus        21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~   99 (148)
T 2vgx_A           21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL   99 (148)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence            3344444555555555555555555554433 334444444555555555555555555554422233444444455555


Q ss_pred             HhcCCHHHHHHHHHHHHH
Q 048269          188 CDVGDLIEASKIWNLMTD  205 (465)
Q Consensus       188 ~~~g~~~~a~~~~~~m~~  205 (465)
                      ...|++++|...|+...+
T Consensus       100 ~~~g~~~~A~~~~~~al~  117 (148)
T 2vgx_A          100 LQXGELAEAESGLFLAQE  117 (148)
T ss_dssp             HHTTCHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHH
Confidence            555555555555544443

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.60  E-value=1.4e-06  Score=66.44  Aligned_cols=92  Identities=12%  Similarity=-0.031  Sum_probs=34.6

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcC
Q 048269          147 NKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKIN  226 (465)
Q Consensus       147 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g  226 (465)
                      ..+...+...|++++|...|++.....+.+...+..+...+...|++++|...+++..+.. +.+...+..+..++.+.|
T Consensus        20 ~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~   98 (133)
T 2lni_A           20 KNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAALEAMK   98 (133)
T ss_dssp             HHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHHh
Confidence            3333333333333444333333332222233333333333334444444444443333321 112333333444444444


Q ss_pred             CHHHHHHHHHHHH
Q 048269          227 KDDEAMKVFQMMR  239 (465)
Q Consensus       227 ~~~~A~~~~~~m~  239 (465)
                      ++++|.+.|++..
T Consensus        99 ~~~~A~~~~~~~~  111 (133)
T 2lni_A           99 DYTKAMDVYQKAL  111 (133)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHH
Confidence            4444444444433

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.60  E-value=4.2e-07  Score=79.91  Aligned_cols=97  Identities=12%  Similarity=-0.050  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHH
Q 048269          143 LEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETF  222 (465)
Q Consensus       143 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~  222 (465)
                      ...+..+...+.+.|++++|+..|++.....+.+...|..+..+|.+.|++++|...++...+.. +-+...+..+..++
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~   82 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ   82 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence            33444455555555555555555555542223345555555555555555555555555555432 22345555555556


Q ss_pred             HhcCCHHHHHHHHHHHHH
Q 048269          223 FKINKDDEAMKVFQMMRV  240 (465)
Q Consensus       223 ~~~g~~~~A~~~~~~m~~  240 (465)
                      ...|++++|.+.|+...+
T Consensus        83 ~~~g~~~~A~~~~~~al~  100 (281)
T 2c2l_A           83 LEMESYDEAIANLQRAYS  100 (281)
T ss_dssp             HHTTCHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHH
Confidence            666666666666655544

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.58  E-value=2.5e-06  Score=63.38  Aligned_cols=108  Identities=12%  Similarity=-0.145  Sum_probs=69.8

Q ss_pred             HHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 048269           74 SITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTL  153 (465)
Q Consensus        74 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~  153 (465)
                      ...+..+...+...|++++|...|+......+.+...+..+...+...|++++|...++...+.. +.+...+..+..++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~   82 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence            45566666777777777777777777766665566666777777777777777777777766653 33556666666666


Q ss_pred             HcCCCHHHHHHHHHHhhcCCCCCHHhHHH
Q 048269          154 CQRKLVVEAKYLILKLSEWIKPNEIAYGW  182 (465)
Q Consensus       154 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~  182 (465)
                      ...|++++|.+.+++.....+.+...+..
T Consensus        83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  111 (118)
T 1elw_A           83 EFLNRFEEAKRTYEEGLKHEANNPQLKEG  111 (118)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHcCCCCHHHHHH
Confidence            67777777777776665333334444433

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.56  E-value=2.2e-06  Score=65.02  Aligned_cols=95  Identities=11%  Similarity=0.019  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHh
Q 048269          110 TFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCD  189 (465)
Q Consensus       110 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~  189 (465)
                      .+..+...+...|++++|+..|+...+.. +.+...+..+..++...|++++|...+++.....+.+...+..+...+..
T Consensus        14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (131)
T 2vyi_A           14 RLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSS   92 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHH
Confidence            34444444555555555555555544432 22344444444444445555555555444442223334444444444444


Q ss_pred             cCCHHHHHHHHHHHHH
Q 048269          190 VGDLIEASKIWNLMTD  205 (465)
Q Consensus       190 ~g~~~~a~~~~~~m~~  205 (465)
                      .|++++|...|+...+
T Consensus        93 ~~~~~~A~~~~~~~~~  108 (131)
T 2vyi_A           93 LNKHVEAVAYYKKALE  108 (131)
T ss_dssp             TTCHHHHHHHHHHHHH
T ss_pred             hCCHHHHHHHHHHHHh
Confidence            4444444444444443

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.56  E-value=3.6e-07  Score=71.15  Aligned_cols=97  Identities=5%  Similarity=-0.184  Sum_probs=74.4

Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 048269           73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKT  152 (465)
Q Consensus        73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~  152 (465)
                      +...+..+...+.+.|++++|...|+.....++.+...|..+..++.+.|++++|+..|+...+.. +.+...+..+..+
T Consensus        17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~   95 (142)
T 2xcb_A           17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAEC   95 (142)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHH
Confidence            345556666777788888888888888887777777778888888888888888888888877764 4556667777778


Q ss_pred             HHcCCCHHHHHHHHHHhh
Q 048269          153 LCQRKLVVEAKYLILKLS  170 (465)
Q Consensus       153 ~~~~~~~~~a~~~~~~m~  170 (465)
                      +...|++++|...|++..
T Consensus        96 ~~~~g~~~~A~~~~~~al  113 (142)
T 2xcb_A           96 HLQLGDLDGAESGFYSAR  113 (142)
T ss_dssp             HHHTTCHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHH
Confidence            888888888888887766

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.56  E-value=1.2e-06  Score=79.27  Aligned_cols=87  Identities=10%  Similarity=-0.104  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHH
Q 048269          144 EMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFF  223 (465)
Q Consensus       144 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~  223 (465)
                      ..|..+..+|.+.|++++|+..+++...-.+.+...|..+..+|...|++++|...|++..+.. +-+...+..+..++.
T Consensus       197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~  275 (336)
T 1p5q_A          197 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQ  275 (336)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
Confidence            4444455555555555555555555442223344555555555555555555555555554432 123444455555555


Q ss_pred             hcCCHHHH
Q 048269          224 KINKDDEA  231 (465)
Q Consensus       224 ~~g~~~~A  231 (465)
                      +.|+.++|
T Consensus       276 ~~~~~~~a  283 (336)
T 1p5q_A          276 RIRRQLAR  283 (336)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55555544

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.55  E-value=1.2e-07  Score=85.78  Aligned_cols=96  Identities=10%  Similarity=-0.067  Sum_probs=73.5

Q ss_pred             HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHH
Q 048269          177 EIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVID  256 (465)
Q Consensus       177 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~  256 (465)
                      ..+|..+..+|.+.|++++|+..|+...+.. +.+...|..+..+|...|++++|.+.|++..+.  .|.+...+..+..
T Consensus       196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~  272 (336)
T 1p5q_A          196 LASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAV  272 (336)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence            4677788888888888888888888887763 336777888888888888888888888888765  4546777888888


Q ss_pred             HHHhcCChHHH-HHHHHHHH
Q 048269          257 WMCKRGKISQA-YTMLEEMF  275 (465)
Q Consensus       257 ~~~~~~~~~~a-~~~~~~m~  275 (465)
                      ++.+.|+.+++ ...|+.|.
T Consensus       273 ~~~~~~~~~~a~~~~~~~~~  292 (336)
T 1p5q_A          273 CQQRIRRQLAREKKLYANMF  292 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            88888888777 44555554

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.54  E-value=1.6e-06  Score=65.74  Aligned_cols=96  Identities=7%  Similarity=-0.098  Sum_probs=63.9

Q ss_pred             HHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 048269           74 SITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTL  153 (465)
Q Consensus        74 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~  153 (465)
                      ...|..+...+.+.|++++|+..|++..+.++.+...|..+..++.+.|++++|+..|+...+.. +.+...|..+..++
T Consensus         4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~   82 (126)
T 3upv_A            4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ   82 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence            34556666666777777777777777766666666667777777777777777777777666654 34556666666666


Q ss_pred             HcCCCHHHHHHHHHHhh
Q 048269          154 CQRKLVVEAKYLILKLS  170 (465)
Q Consensus       154 ~~~~~~~~a~~~~~~m~  170 (465)
                      ...|++++|...|++..
T Consensus        83 ~~~~~~~~A~~~~~~al   99 (126)
T 3upv_A           83 IAVKEYASALETLDAAR   99 (126)
T ss_dssp             HHTTCHHHHHHHHHHHH
T ss_pred             HHHhCHHHHHHHHHHHH
Confidence            66677777766666655

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.54  E-value=9.9e-07  Score=71.49  Aligned_cols=120  Identities=8%  Similarity=-0.022  Sum_probs=74.1

Q ss_pred             hcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHH-HHhcCCH--HHH
Q 048269          120 EVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKG-YCDVGDL--IEA  196 (465)
Q Consensus       120 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~-~~~~g~~--~~a  196 (465)
                      ..|++++|+..++...+.. +.+...+..+..+|...|++++|+..|++.....+.+...+..+..+ +...|++  ++|
T Consensus        22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A  100 (177)
T 2e2e_A           22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT  100 (177)
T ss_dssp             -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred             hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence            4566666777776666543 44566666677777777777777777777663234455666666666 5566666  777


Q ss_pred             HHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048269          197 SKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVK  241 (465)
Q Consensus       197 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  241 (465)
                      ...|+...+.. +.+...+..+...+...|++++|...|+.....
T Consensus       101 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  144 (177)
T 2e2e_A          101 RAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL  144 (177)
T ss_dssp             HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence            77777766643 224556666666677777777777777766654

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.49  E-value=3.1e-06  Score=67.54  Aligned_cols=97  Identities=6%  Similarity=-0.156  Sum_probs=81.8

Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 048269           73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKT  152 (465)
Q Consensus        73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~  152 (465)
                      +...|..+...+.+.|++++|++.|++..+.++.+...|..+..++.+.|++++|+..|+...+.. +.+...|..+..+
T Consensus        10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~   88 (164)
T 3sz7_A           10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA   88 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence            566778888888888999999999998888877778888888888888999999999988888765 4567788888888


Q ss_pred             HHcCCCHHHHHHHHHHhh
Q 048269          153 LCQRKLVVEAKYLILKLS  170 (465)
Q Consensus       153 ~~~~~~~~~a~~~~~~m~  170 (465)
                      |...|++++|+..|++..
T Consensus        89 ~~~~g~~~~A~~~~~~al  106 (164)
T 3sz7_A           89 RFDMADYKGAKEAYEKGI  106 (164)
T ss_dssp             HHHTTCHHHHHHHHHHHH
T ss_pred             HHHccCHHHHHHHHHHHH
Confidence            888888888888888877

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.46  E-value=7.4e-06  Score=62.89  Aligned_cols=98  Identities=5%  Similarity=-0.115  Sum_probs=76.4

Q ss_pred             CCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 048269           72 HNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVK  151 (465)
Q Consensus        72 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~  151 (465)
                      .+...|..+...+...|++++|...|+.....++.+..++..+..++...|++++|+..++...+.. +.+...+..+..
T Consensus         7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~   85 (137)
T 3q49_B            7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ   85 (137)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence            3677778888888888888888888888877777677778888888888888888888888877754 446677777777


Q ss_pred             HHHcCCCHHHHHHHHHHhh
Q 048269          152 TLCQRKLVVEAKYLILKLS  170 (465)
Q Consensus       152 ~~~~~~~~~~a~~~~~~m~  170 (465)
                      ++...|++++|+..|++..
T Consensus        86 ~~~~~~~~~~A~~~~~~a~  104 (137)
T 3q49_B           86 CQLEMESYDEAIANLQRAY  104 (137)
T ss_dssp             HHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHH
Confidence            8888888888888887765

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.45  E-value=2e-06  Score=63.26  Aligned_cols=97  Identities=10%  Similarity=0.002  Sum_probs=68.0

Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC--CHHHHHHHH
Q 048269           73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEY--SLEMLNKVV  150 (465)
Q Consensus        73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll  150 (465)
                      +...+..+...+.+.|++++|...|++..+..+.+..++..+...+...|++++|+..|+...+.. +.  +...+..+.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~   83 (112)
T 2kck_A            5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA   83 (112)
T ss_dssp             STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence            445566677777777777777777777776666666677777777777777777777777776653 33  466666777


Q ss_pred             HHHHcC-CCHHHHHHHHHHhh
Q 048269          151 KTLCQR-KLVVEAKYLILKLS  170 (465)
Q Consensus       151 ~~~~~~-~~~~~a~~~~~~m~  170 (465)
                      .++... |++++|.+.+++..
T Consensus        84 ~~~~~~~~~~~~A~~~~~~~~  104 (112)
T 2kck_A           84 DALRYIEGKEVEAEIAEARAK  104 (112)
T ss_dssp             HHHTTCSSCSHHHHHHHHHHG
T ss_pred             HHHHHHhCCHHHHHHHHHHHh
Confidence            777777 77777777777766

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.45  E-value=1.2e-06  Score=68.09  Aligned_cols=92  Identities=12%  Similarity=-0.080  Sum_probs=42.3

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCC
Q 048269          148 KVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINK  227 (465)
Q Consensus       148 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~  227 (465)
                      .+...+.+.|++++|+..|++.....+.+...|..+..+|...|++++|+..|+...+.. +-+...+..+..++...|+
T Consensus        23 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~  101 (142)
T 2xcb_A           23 ALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHLQLGD  101 (142)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCC
Confidence            334444444444555444444442223344444444444455555555555555444432 1233344444445555555


Q ss_pred             HHHHHHHHHHHHH
Q 048269          228 DDEAMKVFQMMRV  240 (465)
Q Consensus       228 ~~~A~~~~~~m~~  240 (465)
                      +++|.+.|+....
T Consensus       102 ~~~A~~~~~~al~  114 (142)
T 2xcb_A          102 LDGAESGFYSARA  114 (142)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            5555555554443

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.44  E-value=0.00012  Score=64.93  Aligned_cols=188  Identities=9%  Similarity=-0.040  Sum_probs=120.4

Q ss_pred             hcCChh-HHHHHHHHHhhCCCCChHHHHHHHHHHHhcCC----------HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 048269           86 KSRNID-LFWETLQEMGRRRLVNDKTFKIALMTLAEVRE----------LKKMVNFFHIMNDCGCEYSLEMLNKVVKTLC  154 (465)
Q Consensus        86 ~~g~~~-~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~  154 (465)
                      +.|.++ +|+++++.+...++.+..+|+.--..+...+.          +++++.+++.+.... +-+..+|+.-..++.
T Consensus        41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~  119 (331)
T 3dss_A           41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLS  119 (331)
T ss_dssp             HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHh
Confidence            455555 68888888888877666666654444433332          567777777777654 556777777666666


Q ss_pred             cCC--CHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhc------
Q 048269          155 QRK--LVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGD-LIEASKIWNLMTDEGFEPSIDVVDKMIETFFKI------  225 (465)
Q Consensus       155 ~~~--~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~------  225 (465)
                      +.+  .+++++.+++++....+-|..+|+.-.-.....|. ++++++.++.+.+..+ -|...|+.....+.+.      
T Consensus       120 ~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p-~N~SAW~~R~~ll~~l~~~~~~  198 (331)
T 3dss_A          120 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDS  198 (331)
T ss_dssp             HCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHHSCCC--
T ss_pred             ccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhhhcccc
Confidence            666  37788888888775456677777776666667776 5778888887777642 3666666655555444      


Q ss_pred             --------CCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhc-----------CChHHHHHHHHHHHHC
Q 048269          226 --------NKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKR-----------GKISQAYTMLEEMFKR  277 (465)
Q Consensus       226 --------g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~-----------~~~~~a~~~~~~m~~~  277 (465)
                              +.++++++.+......  .|.|...|+-+-..+.+.           +.++++++.++++.+.
T Consensus       199 ~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~  267 (331)
T 3dss_A          199 GPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL  267 (331)
T ss_dssp             ----CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh
Confidence                    3466777777777655  455666776554444443           2345555555555544

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.44  E-value=2.3e-07  Score=76.89  Aligned_cols=95  Identities=15%  Similarity=-0.082  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC----------------HHHHHHHHHHHHcCCCHHHHHHHHHHhhcCC
Q 048269          110 TFKIALMTLAEVRELKKMVNFFHIMNDCGCEYS----------------LEMLNKVVKTLCQRKLVVEAKYLILKLSEWI  173 (465)
Q Consensus       110 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~  173 (465)
                      .+..+...+.+.|++++|+..|+...+.. +.+                ...+..+..+|...|++++|+..+++.....
T Consensus        40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  118 (198)
T 2fbn_A           40 DIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID  118 (198)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence            45555556666666666666666665532 111                1334444444444455555555544444222


Q ss_pred             CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048269          174 KPNEIAYGWLIKGYCDVGDLIEASKIWNLMTD  205 (465)
Q Consensus       174 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  205 (465)
                      +.+...+..+..+|...|++++|...|+...+
T Consensus       119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~  150 (198)
T 2fbn_A          119 KNNVKALYKLGVANMYFGFLEEAKENLYKAAS  150 (198)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            33444444444444444444444444444443

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.44  E-value=3e-06  Score=70.08  Aligned_cols=132  Identities=10%  Similarity=-0.054  Sum_probs=103.1

Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCh----------------HHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048269           73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVND----------------KTFKIALMTLAEVRELKKMVNFFHIMND  136 (465)
Q Consensus        73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~  136 (465)
                      ....+..+...+.+.|++++|+..|++..+..+.+.                .++..+..++.+.|++++|+..++...+
T Consensus        37 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  116 (198)
T 2fbn_A           37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK  116 (198)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            345677788899999999999999999988665333                7888899999999999999999999988


Q ss_pred             CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHH-HHHHHHHH
Q 048269          137 CGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEAS-KIWNLMTD  205 (465)
Q Consensus       137 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~-~~~~~m~~  205 (465)
                      .. +.+...+..+..+|...|++++|+..|++.....+.+...+..+..++...++.+++. ..|..+..
T Consensus       117 ~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~  185 (198)
T 2fbn_A          117 ID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD  185 (198)
T ss_dssp             HS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred             hC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            74 5678889999999999999999999999987444667788888888887777776666 45555544

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.40  E-value=8.2e-06  Score=63.49  Aligned_cols=111  Identities=6%  Similarity=-0.101  Sum_probs=73.7

Q ss_pred             CCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHH
Q 048269           72 HNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVN---DKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNK  148 (465)
Q Consensus        72 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  148 (465)
                      .+...+..+...+...|++++|.+.|++..+..+.+   ..++..+..++...|++++|+..++...+.. +.+...+..
T Consensus        26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~  104 (148)
T 2dba_A           26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYR  104 (148)
T ss_dssp             CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHH
Confidence            366777777777778888888888888777665543   5566677777777777777777777766653 335666666


Q ss_pred             HHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHH
Q 048269          149 VVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWL  183 (465)
Q Consensus       149 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~l  183 (465)
                      +..++...|++++|...|++.....+.+...+..+
T Consensus       105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  139 (148)
T 2dba_A          105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEAL  139 (148)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHH
Confidence            66777777777777777777653223344444333

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.39  E-value=1.5e-05  Score=74.68  Aligned_cols=196  Identities=9%  Similarity=-0.029  Sum_probs=140.4

Q ss_pred             HHHHHhcCChhHHHHHHHHHhhCCCCC-----------------hHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCCC
Q 048269           81 VDIIGKSRNIDLFWETLQEMGRRRLVN-----------------DKTFKIALMTLAEVRELKKMVNFFHIMNDCG-CEYS  142 (465)
Q Consensus        81 ~~~~~~~g~~~~a~~~~~~~~~~~~~~-----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~  142 (465)
                      .+.+.+.|++++|++.|..+.+.....                 ..++..+...|...|++++|.+.+..+.+.- ..++
T Consensus        11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~   90 (434)
T 4b4t_Q           11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK   90 (434)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence            456788899999999999988765421                 1247788999999999999999999876621 1122


Q ss_pred             H----HHHHHHHHHHHcCCCHHHHHHHHHHhh-----cCC-CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC--
Q 048269          143 L----EMLNKVVKTLCQRKLVVEAKYLILKLS-----EWI-KPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDE--GF--  208 (465)
Q Consensus       143 ~----~~~~~ll~~~~~~~~~~~a~~~~~~m~-----~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~--  208 (465)
                      .    .+.+.+-..+...|+.++|.+++++..     .+. ..-..++..|...|...|++++|..++..+...  +.  
T Consensus        91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~  170 (434)
T 4b4t_Q           91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD  170 (434)
T ss_dssp             HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred             hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence            2    223334444556789999999998865     222 223567888999999999999999999988652  11  


Q ss_pred             CC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CC-CCC--cchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048269          209 EP-SIDVVDKMIETFFKINKDDEAMKVFQMMRVKR--MD-DLG--LSTYRIVIDWMCKRGKISQAYTMLEEMFK  276 (465)
Q Consensus       209 ~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~-~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~  276 (465)
                      .+ ...++..++..|...|++++|..+++......  .. |+.  ...+..+...+...++++.|...|.+...
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~  244 (434)
T 4b4t_Q          171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE  244 (434)
T ss_dssp             STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            12 35678899999999999999999998875431  11 101  23456666777788999999988877654

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.37  E-value=1.3e-05  Score=60.59  Aligned_cols=95  Identities=12%  Similarity=-0.085  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHh
Q 048269          110 TFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCD  189 (465)
Q Consensus       110 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~  189 (465)
                      .+..+...+.+.|++++|+..|+...+.. +.+...|..+..++.+.|++++|+..+++.....+.+...|..+..++..
T Consensus         6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~   84 (126)
T 3upv_A            6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA   84 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            45555566666666666666666666543 34555666666666666666666666666553334455566666666666


Q ss_pred             cCCHHHHHHHHHHHHH
Q 048269          190 VGDLIEASKIWNLMTD  205 (465)
Q Consensus       190 ~g~~~~a~~~~~~m~~  205 (465)
                      .|++++|...|++..+
T Consensus        85 ~~~~~~A~~~~~~al~  100 (126)
T 3upv_A           85 VKEYASALETLDAART  100 (126)
T ss_dssp             TTCHHHHHHHHHHHHH
T ss_pred             HhCHHHHHHHHHHHHH
Confidence            6666666666666554

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.37  E-value=1.9e-05  Score=58.46  Aligned_cols=95  Identities=7%  Similarity=-0.074  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHh
Q 048269          110 TFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCD  189 (465)
Q Consensus       110 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~  189 (465)
                      .+..+...+...|++++|...|+...... +.+...+..+..++...|++++|...+++.....+.+...+..+..++..
T Consensus         6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~   84 (118)
T 1elw_A            6 ELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF   84 (118)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            34444444555555555555555544432 22344444444444444555555555544442223334444444444444


Q ss_pred             cCCHHHHHHHHHHHHH
Q 048269          190 VGDLIEASKIWNLMTD  205 (465)
Q Consensus       190 ~g~~~~a~~~~~~m~~  205 (465)
                      .|++++|...++...+
T Consensus        85 ~~~~~~A~~~~~~~~~  100 (118)
T 1elw_A           85 LNRFEEAKRTYEEGLK  100 (118)
T ss_dssp             TTCHHHHHHHHHHHHT
T ss_pred             HhhHHHHHHHHHHHHH
Confidence            4444444444444443

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.37  E-value=0.00018  Score=63.84  Aligned_cols=217  Identities=6%  Similarity=-0.091  Sum_probs=160.2

Q ss_pred             ChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCC----------hhHHHHHHHHHhhCCCCChHHHHHHHHHHHhc
Q 048269           52 SWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRN----------IDLFWETLQEMGRRRLVNDKTFKIALMTLAEV  121 (465)
Q Consensus        52 ~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~  121 (465)
                      -.+.|+..++.++...|.   +..+|+.--.++...+.          +++++.+++.+...++.+..+|+.-...+.+.
T Consensus        45 ~s~eaL~~t~~~L~~nP~---~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l  121 (331)
T 3dss_A           45 LDESVLELTSQILGANPD---FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL  121 (331)
T ss_dssp             CSHHHHHHHHHHHTTCTT---CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHCch---hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcc
Confidence            456799999998776666   77778766555554443          67899999999999888888999888888888


Q ss_pred             C--CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCC-HHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhc--------
Q 048269          122 R--ELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKL-VVEAKYLILKLSEWIKPNEIAYGWLIKGYCDV--------  190 (465)
Q Consensus       122 ~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~--------  190 (465)
                      +  .+++++.+++.+.+.. +-|..+|+.-..++...|. ++++++.++++....+-|..+|+.....+.+.        
T Consensus       122 ~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~  200 (331)
T 3dss_A          122 PEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP  200 (331)
T ss_dssp             SSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC----
T ss_pred             CcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcccccc
Confidence            8  4899999999999876 6788888888888888888 68999999999855577888888777766655        


Q ss_pred             ------CCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHcCCCCCCcchHHH
Q 048269          191 ------GDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKI-----------NKDDEAMKVFQMMRVKRMDDLGLSTYRI  253 (465)
Q Consensus       191 ------g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~~~~~~~~~~~~~  253 (465)
                            +.++++++.+....... +-|...|+-+-..+.+.           +.++++++.++++.+.  .| +. .|..
T Consensus       201 ~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~--~p-d~-~w~l  275 (331)
T 3dss_A          201 QGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL--EP-EN-KWCL  275 (331)
T ss_dssp             --CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH--CT-TC-HHHH
T ss_pred             ccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh--Cc-cc-chHH
Confidence                  45788999999888763 34677776554444444           4578899999999876  56 32 3432


Q ss_pred             HHHHH-----HhcCChHHHHHHHHHHHHC
Q 048269          254 VIDWM-----CKRGKISQAYTMLEEMFKR  277 (465)
Q Consensus       254 li~~~-----~~~~~~~~a~~~~~~m~~~  277 (465)
                      +..+.     ...+..+++...+.++.+.
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~  304 (331)
T 3dss_A          276 LTIILLMRALDPLLYEKETLQYFSTLKAV  304 (331)
T ss_dssp             HHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence            22211     1345566677777777654

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.33  E-value=4.9e-06  Score=63.06  Aligned_cols=96  Identities=8%  Similarity=-0.002  Sum_probs=53.8

Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC--CCC----HHHHHH
Q 048269           75 ITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGC--EYS----LEMLNK  148 (465)
Q Consensus        75 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~  148 (465)
                      ..|..+...+...|++++|...|++..+..+.+..++..+...+...|++++|+..++...+...  .++    ..++..
T Consensus         5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (131)
T 1elr_A            5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR   84 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence            44555566666666666666666666655555555566666666666666666666665554320  011    444445


Q ss_pred             HHHHHHcCCCHHHHHHHHHHhh
Q 048269          149 VVKTLCQRKLVVEAKYLILKLS  170 (465)
Q Consensus       149 ll~~~~~~~~~~~a~~~~~~m~  170 (465)
                      +..++...|++++|.+.|++..
T Consensus        85 la~~~~~~~~~~~A~~~~~~~~  106 (131)
T 1elr_A           85 IGNSYFKEEKYKDAIHFYNKSL  106 (131)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHH
Confidence            5555555555555555555544

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.33  E-value=1.4e-05  Score=60.57  Aligned_cols=93  Identities=9%  Similarity=-0.147  Sum_probs=58.9

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCh---HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC---HHHHHHHH
Q 048269           77 FNRMVDIIGKSRNIDLFWETLQEMGRRRLVND---KTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYS---LEMLNKVV  150 (465)
Q Consensus        77 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll  150 (465)
                      +..+...+.+.|++++|...|+.+.+..+.+.   .++..+..++.+.|++++|+..|+...+.. +.+   ...+..+.
T Consensus         5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la   83 (129)
T 2xev_A            5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLG   83 (129)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHH
Confidence            33455566667777777777777666555333   466666667777777777777777666643 222   45556666


Q ss_pred             HHHHcCCCHHHHHHHHHHhh
Q 048269          151 KTLCQRKLVVEAKYLILKLS  170 (465)
Q Consensus       151 ~~~~~~~~~~~a~~~~~~m~  170 (465)
                      .++...|++++|...|+++.
T Consensus        84 ~~~~~~g~~~~A~~~~~~~~  103 (129)
T 2xev_A           84 LSQYGEGKNTEAQQTLQQVA  103 (129)
T ss_dssp             HHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHH
Confidence            66666777777777776665

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.32  E-value=2.3e-05  Score=59.32  Aligned_cols=55  Identities=9%  Similarity=0.022  Sum_probs=22.9

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 048269          113 IALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILK  168 (465)
Q Consensus       113 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~  168 (465)
                      .+...+.+.|++++|+..|++..+.. +.+...|+.+..+|...|++++|++.+++
T Consensus        13 ~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~   67 (127)
T 4gcn_A           13 DLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEK   67 (127)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHH
Confidence            33444444444444444444444332 22333444444444444444444444444

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.32  E-value=8.1e-06  Score=59.87  Aligned_cols=98  Identities=15%  Similarity=-0.020  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--cHHHHHHHHH
Q 048269          143 LEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEP--SIDVVDKMIE  220 (465)
Q Consensus       143 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~--~~~~~~~li~  220 (465)
                      ...+..+...+...|++++|...|++.....+.+...+..+...+...|++++|...|++..+.. +.  +...+..+..
T Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~   84 (112)
T 2kck_A            6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKAD   84 (112)
T ss_dssp             TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHH
Confidence            33444555556666666666666666553234455566666666666666666666666666542 12  3556666666


Q ss_pred             HHHhc-CCHHHHHHHHHHHHHc
Q 048269          221 TFFKI-NKDDEAMKVFQMMRVK  241 (465)
Q Consensus       221 ~~~~~-g~~~~A~~~~~~m~~~  241 (465)
                      ++.+. |++++|.+.++.....
T Consensus        85 ~~~~~~~~~~~A~~~~~~~~~~  106 (112)
T 2kck_A           85 ALRYIEGKEVEAEIAEARAKLE  106 (112)
T ss_dssp             HHTTCSSCSHHHHHHHHHHGGG
T ss_pred             HHHHHhCCHHHHHHHHHHHhhc
Confidence            66666 6666666666666654

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.32  E-value=5.2e-06  Score=62.93  Aligned_cols=97  Identities=10%  Similarity=0.077  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcC---CCCC----HHhHH
Q 048269          109 KTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEW---IKPN----EIAYG  181 (465)
Q Consensus       109 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~----~~~~~  181 (465)
                      ..+..+...+...|++++|+..|+...+.. +.+...+..+..++...|++++|...+++....   ..++    ..++.
T Consensus         5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (131)
T 1elr_A            5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence            345556666666677777777776666543 345556666666666666666666666665511   1112    45555


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHC
Q 048269          182 WLIKGYCDVGDLIEASKIWNLMTDE  206 (465)
Q Consensus       182 ~li~~~~~~g~~~~a~~~~~~m~~~  206 (465)
                      .+...+...|++++|.+.|+...+.
T Consensus        84 ~la~~~~~~~~~~~A~~~~~~~~~~  108 (131)
T 1elr_A           84 RIGNSYFKEEKYKDAIHFYNKSLAE  108 (131)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHh
Confidence            5666666666666666666666554

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.31  E-value=3.5e-05  Score=72.21  Aligned_cols=167  Identities=8%  Similarity=-0.126  Sum_probs=75.7

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHhcC---------CCHhh
Q 048269          251 YRIVIDWMCKRGKISQAYTMLEEMFKRG-IEADNL----TLSSIIYGLLARGRLREAYKVVEEIEK---------PDISL  316 (465)
Q Consensus       251 ~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~----~~~~li~~~~~~~~~~~a~~~~~~~~~---------~~~~~  316 (465)
                      +..+...|...|++++|.+.+..+...- ..++..    +.+.+-..+...|+.+.|..+++....         .-..+
T Consensus        58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  137 (434)
T 4b4t_Q           58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL  137 (434)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence            3445555555555555555555443210 001111    111122222334555555555554433         11234


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcCCHHHHHHHHH
Q 048269          317 YHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVE  396 (465)
Q Consensus       317 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~  396 (465)
                      +..+...|...|++++|..++++....-...+...                  ....+|..++..|...|++++|..+++
T Consensus       138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~A~~~~~  199 (434)
T 4b4t_Q          138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKP------------------SLVDVHLLESKVYHKLRNLAKSKASLT  199 (434)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCST------------------HHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccch------------------hHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence            45555666666666666666665543211110000                  001123444555566666666666666


Q ss_pred             HHHhC--CCC-C-C--HhhHHHHHHHHhhccchHHHHHHHHHHHH
Q 048269          397 RVMNR--GVE-V-P--RFDYNKFLHYYSNEEGVVMFEEVGKKLRE  435 (465)
Q Consensus       397 ~m~~~--~~~-p-~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  435 (465)
                      +....  .+. | .  ...+..+...+...|++++|...+.+..+
T Consensus       200 ~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~  244 (434)
T 4b4t_Q          200 AARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE  244 (434)
T ss_dssp             HHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred             HHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            65431  111 1 1  12344445555556666666666555543

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.31  E-value=6.1e-06  Score=61.99  Aligned_cols=93  Identities=6%  Similarity=-0.108  Sum_probs=66.8

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcC
Q 048269           77 FNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQR  156 (465)
Q Consensus        77 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~  156 (465)
                      +..+...+.+.|++++|+..|++..+.++.+...|..+..++...|++++|+..|++..+.. +.+...+..+..++...
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~   98 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE   98 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence            44556667777777777777777777776667777777777777777777777777777654 34566667777777777


Q ss_pred             CCHHHHHHHHHHhh
Q 048269          157 KLVVEAKYLILKLS  170 (465)
Q Consensus       157 ~~~~~a~~~~~~m~  170 (465)
                      |++++|+..+++..
T Consensus        99 g~~~~A~~~~~~al  112 (121)
T 1hxi_A           99 HNANAALASLRAWL  112 (121)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHH
Confidence            77777777777765

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.30  E-value=1.4e-05  Score=60.49  Aligned_cols=106  Identities=8%  Similarity=-0.007  Sum_probs=81.6

Q ss_pred             HHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC--CCC----HHHHH
Q 048269           74 SITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGC--EYS----LEMLN  147 (465)
Q Consensus        74 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~  147 (465)
                      ...+..+-..+.+.|++++|++.|++..+.++.+..+|..+..++.+.|++++|++.++...+...  .++    ..+|.
T Consensus         8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~   87 (127)
T 4gcn_A            8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS   87 (127)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence            456778889999999999999999999998888888999999999999999999999998876421  111    23566


Q ss_pred             HHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhH
Q 048269          148 KVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAY  180 (465)
Q Consensus       148 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~  180 (465)
                      .+..++...|++++|++.|++... ..||..+.
T Consensus        88 ~lg~~~~~~~~~~~A~~~~~kal~-~~~~~~~~  119 (127)
T 4gcn_A           88 RAGNAFQKQNDLSLAVQWFHRSLS-EFRDPELV  119 (127)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHH-HSCCHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHh-hCcCHHHH
Confidence            666777777788888877777652 13454433

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.29  E-value=1.7e-05  Score=60.79  Aligned_cols=98  Identities=9%  Similarity=-0.136  Sum_probs=48.4

Q ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHH
Q 048269          107 NDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKG  186 (465)
Q Consensus       107 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~  186 (465)
                      +...+..+...+...|++++|+..|+...+.. +.+...+..+..++...|++++|...+++.....+.+...+..+..+
T Consensus         8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~   86 (137)
T 3q49_B            8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC   86 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence            34445555555555555555555555554433 23344455555555555555555555555442223344444555555


Q ss_pred             HHhcCCHHHHHHHHHHHHH
Q 048269          187 YCDVGDLIEASKIWNLMTD  205 (465)
Q Consensus       187 ~~~~g~~~~a~~~~~~m~~  205 (465)
                      +...|++++|...|+...+
T Consensus        87 ~~~~~~~~~A~~~~~~a~~  105 (137)
T 3q49_B           87 QLEMESYDEAIANLQRAYS  105 (137)
T ss_dssp             HHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHH
Confidence            5555555555555544443

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.26  E-value=1.3e-05  Score=63.81  Aligned_cols=97  Identities=14%  Similarity=0.017  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHH
Q 048269          144 EMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFF  223 (465)
Q Consensus       144 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~  223 (465)
                      ..+..+...+.+.|++++|+..|++.....+.+...|..+..+|.+.|++++|+..|+...+.. +-+...|..+..++.
T Consensus        12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~   90 (164)
T 3sz7_A           12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLARF   90 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence            3444444455555555555555555442223344555555555555555555555555555432 123445555555555


Q ss_pred             hcCCHHHHHHHHHHHHHc
Q 048269          224 KINKDDEAMKVFQMMRVK  241 (465)
Q Consensus       224 ~~g~~~~A~~~~~~m~~~  241 (465)
                      ..|++++|.+.|++..+.
T Consensus        91 ~~g~~~~A~~~~~~al~~  108 (164)
T 3sz7_A           91 DMADYKGAKEAYEKGIEA  108 (164)
T ss_dssp             HTTCHHHHHHHHHHHHHH
T ss_pred             HccCHHHHHHHHHHHHHh
Confidence            555555555555555443

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.23  E-value=4.2e-05  Score=59.30  Aligned_cols=26  Identities=15%  Similarity=0.121  Sum_probs=10.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048269          214 VVDKMIETFFKINKDDEAMKVFQMMR  239 (465)
Q Consensus       214 ~~~~li~~~~~~g~~~~A~~~~~~m~  239 (465)
                      .+..+..++...|++++|.+.|++..
T Consensus       101 ~~~~~a~~~~~~~~~~~A~~~~~~al  126 (148)
T 2dba_A          101 ALYRRSQALEKLGRLDQAVLDLQRCV  126 (148)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            33333333444444444444443333

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.16  E-value=1.6e-05  Score=59.58  Aligned_cols=94  Identities=7%  Similarity=-0.155  Sum_probs=51.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhc
Q 048269          111 FKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDV  190 (465)
Q Consensus       111 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~  190 (465)
                      +..+...+.+.|++++|+..|+...+.. +.+...|..+..++...|++++|+..|++...-.+.+...+..+..++...
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~   98 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   98 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            3344455555566666666666555543 334555555555555566666666666555532234455555555555555


Q ss_pred             CCHHHHHHHHHHHHH
Q 048269          191 GDLIEASKIWNLMTD  205 (465)
Q Consensus       191 g~~~~a~~~~~~m~~  205 (465)
                      |++++|...|+...+
T Consensus        99 g~~~~A~~~~~~al~  113 (121)
T 1hxi_A           99 HNANAALASLRAWLL  113 (121)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHH
Confidence            555555555555544

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.15  E-value=2.8e-05  Score=73.42  Aligned_cols=88  Identities=8%  Similarity=-0.112  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHH
Q 048269          144 EMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFF  223 (465)
Q Consensus       144 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~  223 (465)
                      ..|..+..+|.+.|++++|+..+++.....+.+...|..+..+|...|++++|...|++..+.. +-+...+..+..++.
T Consensus       318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~  396 (457)
T 1kt0_A          318 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQK  396 (457)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence            3444455555555555555555555442223444555555555555555555555555554431 112334444445555


Q ss_pred             hcCCHHHHH
Q 048269          224 KINKDDEAM  232 (465)
Q Consensus       224 ~~g~~~~A~  232 (465)
                      +.++.+++.
T Consensus       397 ~~~~~~~a~  405 (457)
T 1kt0_A          397 KAKEHNERD  405 (457)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            555544443

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.14  E-value=5.3e-06  Score=78.73  Aligned_cols=121  Identities=4%  Similarity=-0.209  Sum_probs=80.0

Q ss_pred             HHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCH
Q 048269           80 MVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLV  159 (465)
Q Consensus        80 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~  159 (465)
                      +...+.+.|++++|++.|++..+..+.+..++..+..++.+.|++++|++.+++..+.. +.+...+..+..+|...|++
T Consensus        12 lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~   90 (477)
T 1wao_1           12 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF   90 (477)
T ss_dssp             SSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence            33445567777777777777777766667777777777777788888877777777764 44566777777777777778


Q ss_pred             HHHHHHHHHhhcCCCCCHHhHHHHHHH--HHhcCCHHHHHHHHH
Q 048269          160 VEAKYLILKLSEWIKPNEIAYGWLIKG--YCDVGDLIEASKIWN  201 (465)
Q Consensus       160 ~~a~~~~~~m~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~  201 (465)
                      ++|++.|++.....+.+...+..+..+  +.+.|++++|++.++
T Consensus        91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            888777777662223334444444444  667777777777776

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.13  E-value=4.3e-06  Score=62.42  Aligned_cols=82  Identities=9%  Similarity=-0.166  Sum_probs=37.5

Q ss_pred             CChhHHHHHHHHHhhCC---CCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 048269           88 RNIDLFWETLQEMGRRR---LVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKY  164 (465)
Q Consensus        88 g~~~~a~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~  164 (465)
                      |++++|+..|++..+.+   +.+..++..+..++...|++++|+..|++..+.. +-+...+..+..++...|++++|+.
T Consensus         4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~   82 (117)
T 3k9i_A            4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGVE   82 (117)
T ss_dssp             ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHHH
Confidence            44455555555554443   1223344444555555555555555555544432 2334444444455555555555555


Q ss_pred             HHHHhh
Q 048269          165 LILKLS  170 (465)
Q Consensus       165 ~~~~m~  170 (465)
                      .+++..
T Consensus        83 ~~~~al   88 (117)
T 3k9i_A           83 LLLKII   88 (117)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555444

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.13  E-value=1.8e-05  Score=62.43  Aligned_cols=62  Identities=5%  Similarity=-0.143  Sum_probs=33.3

Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHhhCCC--CC----hHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048269           75 ITFNRMVDIIGKSRNIDLFWETLQEMGRRRL--VN----DKTFKIALMTLAEVRELKKMVNFFHIMND  136 (465)
Q Consensus        75 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  136 (465)
                      .++..+...+...|++++|+..+++..+...  .+    ..++..+...+...|++++|...++...+
T Consensus        10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~   77 (164)
T 3ro3_A           10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLL   77 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3455566666666666666666666543211  11    12445555555555666555555555443

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.13  E-value=2.2e-05  Score=61.92  Aligned_cols=57  Identities=11%  Similarity=-0.070  Sum_probs=30.7

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHhcC-----CC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048269          286 LSSIIYGLLARGRLREAYKVVEEIEK-----PD----ISLYHGLIKGLLRLRRAREATQVFREMIK  342 (465)
Q Consensus       286 ~~~li~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~  342 (465)
                      +..+...+...|++++|...+++...     .+    ...+..+...+...|++++|.+.+++..+
T Consensus        92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  157 (164)
T 3ro3_A           92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE  157 (164)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            34444445555555555555544433     11    23345556666677777777777766653

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.12  E-value=2.3e-05  Score=71.68  Aligned_cols=138  Identities=11%  Similarity=-0.044  Sum_probs=71.3

Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 048269           75 ITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLC  154 (465)
Q Consensus        75 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~  154 (465)
                      ..+..+...+.+.|++++|++.|++..+....           ......       .+...+.. +.+..+|..+..+|.
T Consensus       224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~-----------~~~~~~-------~~~~~~~~-~~~~~~~~nla~~~~  284 (370)
T 1ihg_A          224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEG-----------SRAAAE-------DADGAKLQ-PVALSCVLNIGACKL  284 (370)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----------HHHHSC-------HHHHGGGH-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc-----------CccccC-------hHHHHHHH-HHHHHHHHHHHHHHH
Confidence            34666677777777777777777776541000           000000       00000010 223445555555666


Q ss_pred             cCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 048269          155 QRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAM  232 (465)
Q Consensus       155 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~  232 (465)
                      +.|++++|+..+++.....+.+...+..+..+|...|++++|...|++..+.. +-+...+..+..++...++.+++.
T Consensus       285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~  361 (370)
T 1ihg_A          285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKE  361 (370)
T ss_dssp             HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666666666553334455556666666666666666666666655542 124445555555555555555443

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.07  E-value=7.1e-05  Score=56.52  Aligned_cols=93  Identities=9%  Similarity=-0.046  Sum_probs=46.5

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH---HHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCC---HHhHHHHHHH
Q 048269          113 IALMTLAEVRELKKMVNFFHIMNDCGCEYSL---EMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPN---EIAYGWLIKG  186 (465)
Q Consensus       113 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~li~~  186 (465)
                      .+...+...|++++|+..|+.+.+.. +.+.   ..+..+..++...|++++|+..|++.....+.+   ..++..+..+
T Consensus         7 ~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~   85 (129)
T 2xev_A            7 NVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS   85 (129)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence            34445555566666666666555532 1122   344445555555555555555555554222222   3444455555


Q ss_pred             HHhcCCHHHHHHHHHHHHHC
Q 048269          187 YCDVGDLIEASKIWNLMTDE  206 (465)
Q Consensus       187 ~~~~g~~~~a~~~~~~m~~~  206 (465)
                      +...|++++|...|+.+.+.
T Consensus        86 ~~~~g~~~~A~~~~~~~~~~  105 (129)
T 2xev_A           86 QYGEGKNTEAQQTLQQVATQ  105 (129)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHH
Confidence            55555555555555555443

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.06  E-value=4.5e-05  Score=60.53  Aligned_cols=96  Identities=9%  Similarity=-0.065  Sum_probs=53.8

Q ss_pred             HHhHHHHHHHHHhcCChhHHHHHHHHHhhC------------------CCCChHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 048269           74 SITFNRMVDIIGKSRNIDLFWETLQEMGRR------------------RLVNDKTFKIALMTLAEVRELKKMVNFFHIMN  135 (465)
Q Consensus        74 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  135 (465)
                      ...+......+.+.|++++|+..|+.....                  ++....+|..+..++.+.|++++|+..++...
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al   90 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL   90 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            445666777777888888888888777654                  11122344455555555555555555555555


Q ss_pred             hCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh
Q 048269          136 DCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLS  170 (465)
Q Consensus       136 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~  170 (465)
                      +.. +.+...|..+..+|...|++++|...|++..
T Consensus        91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al  124 (162)
T 3rkv_A           91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLL  124 (162)
T ss_dssp             HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHH
Confidence            443 3344445555555555555555555555544

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=97.98  E-value=2.9e-05  Score=73.71  Aligned_cols=113  Identities=7%  Similarity=-0.022  Sum_probs=93.9

Q ss_pred             CChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 048269           51 LSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNF  130 (465)
Q Consensus        51 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  130 (465)
                      .+++.|...|+.++...+.   +..+|..+..++.+.|++++|++.+++..+.++.+..++..+..++.+.|++++|++.
T Consensus        20 g~~~~A~~~~~~Al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~   96 (477)
T 1wao_1           20 KDYENAIKFYSQAIELNPS---NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRD   96 (477)
T ss_dssp             TCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCc---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            3789999999999777655   7999999999999999999999999999999888889999999999999999999999


Q ss_pred             HHHhhhCCCCCCHHHHHHHHHH--HHcCCCHHHHHHHHH
Q 048269          131 FHIMNDCGCEYSLEMLNKVVKT--LCQRKLVVEAKYLIL  167 (465)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~ll~~--~~~~~~~~~a~~~~~  167 (465)
                      |++..+.. +.+...+..+..+  +.+.|++++|++.++
T Consensus        97 ~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           97 YETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            99998864 3344455555555  888899999999998

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.98  E-value=0.00049  Score=66.53  Aligned_cols=172  Identities=9%  Similarity=-0.062  Sum_probs=116.3

Q ss_pred             hhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCC----------HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCC--
Q 048269           90 IDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRE----------LKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRK--  157 (465)
Q Consensus        90 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--  157 (465)
                      -++|++.++.+...++....+|+.--.++...++          ++++++.++.+.+.. +-+..+|+.-..++.+.+  
T Consensus        45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~  123 (567)
T 1dce_A           45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEP  123 (567)
T ss_dssp             SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSC
T ss_pred             CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccc
Confidence            3466777777777777666677666666666555          777777777777654 456667777666677777  


Q ss_pred             CHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhc-----------
Q 048269          158 LVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVG-DLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKI-----------  225 (465)
Q Consensus       158 ~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~-----------  225 (465)
                      +++++++.++++....+-|..+|+.-...+.+.| .++++++.++++.+... -+...|+.....+.+.           
T Consensus       124 ~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p-~n~saW~~r~~ll~~l~~~~~~~~~~~  202 (567)
T 1dce_A          124 NWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQGR  202 (567)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred             cHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC-CCccHHHHHHHHHHhhccccccccccc
Confidence            5677777777777444666777777666666667 67777777777766542 2566666655555442           


Q ss_pred             ---CCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChH
Q 048269          226 ---NKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKIS  265 (465)
Q Consensus       226 ---g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~  265 (465)
                         +.++++++.+++....  .|.+...|.-.-..+.+.+..+
T Consensus       203 ~~~~~~~eel~~~~~ai~~--~P~~~saW~y~~~ll~~~~~~~  243 (567)
T 1dce_A          203 LPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGRAEPHD  243 (567)
T ss_dssp             SCHHHHHHHHHHHHHHHHH--CSSCSHHHHHHHHHHSCCCCCS
T ss_pred             ccHHHHHHHHHHHHHHHhh--CCCCccHHHHHHHHHhcCCCcc
Confidence               4567788888777765  5657778877777776666533

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.97  E-value=9.5e-06  Score=59.58  Aligned_cols=96  Identities=7%  Similarity=-0.081  Sum_probs=69.9

Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC------HHHH
Q 048269           73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYS------LEML  146 (465)
Q Consensus        73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~  146 (465)
                      +...+..+...+.+.|++++|++.|++..+..+.+..++..+..++.+.|++++|+..|+...+.. +.+      ...+
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~   81 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHVAIRSKLQ   81 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHHHHHHHHH
Confidence            556777888888888888888888888888777777888888888888888888888888887753 222      4455


Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHh
Q 048269          147 NKVVKTLCQRKLVVEAKYLILKL  169 (465)
Q Consensus       147 ~~ll~~~~~~~~~~~a~~~~~~m  169 (465)
                      ..+..++...|+.+.|...++++
T Consensus        82 ~~~~~~~~~~~~~~~a~~~~~~~  104 (111)
T 2l6j_A           82 YRLELAQGAVGSVQIPVVEVDEL  104 (111)
T ss_dssp             HHHHHHHHHHHCCCCCSSSSSSC
T ss_pred             HHHHHHHHHHHhHhhhHhHHHHh
Confidence            55556666666655555544443

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=97.97  E-value=0.00011  Score=69.33  Aligned_cols=122  Identities=10%  Similarity=0.013  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCC---------------HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 048269          144 EMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPN---------------EIAYGWLIKGYCDVGDLIEASKIWNLMTDEGF  208 (465)
Q Consensus       144 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~---------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~  208 (465)
                      ..+..+...+.+.|++++|+..|++...-.+.+               ...|..+..+|.+.|++++|+..+++..+.. 
T Consensus       269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-  347 (457)
T 1kt0_A          269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-  347 (457)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-
Confidence            344555555556666666666666554111111               3455555555556666666666665555542 


Q ss_pred             CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHH
Q 048269          209 EPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAY  268 (465)
Q Consensus       209 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~  268 (465)
                      +.+...|..+..+|...|++++|...|+...+.  .|.+...+..+..++.+.++.+++.
T Consensus       348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~  405 (457)
T 1kt0_A          348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEHNERD  405 (457)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            224555555555555566666666666555543  3334455555555555555554443

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.96  E-value=0.00011  Score=67.20  Aligned_cols=139  Identities=5%  Similarity=-0.133  Sum_probs=100.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHh
Q 048269          110 TFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCD  189 (465)
Q Consensus       110 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~  189 (465)
                      .+..+...+.+.|++++|+..|++..+.-  ++..          ....       .++.....+.+..+|..+..+|.+
T Consensus       225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~~----------~~~~-------~~~~~~~~~~~~~~~~nla~~~~~  285 (370)
T 1ihg_A          225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGSR----------AAAE-------DADGAKLQPVALSCVLNIGACKLK  285 (370)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHHH----------HHSC-------HHHHGGGHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcCc----------cccC-------hHHHHHHHHHHHHHHHHHHHHHHh
Confidence            35566667777777777777777666520  1000          0001       111111123456788999999999


Q ss_pred             cCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHH
Q 048269          190 VGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYT  269 (465)
Q Consensus       190 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~  269 (465)
                      .|++++|+..+++..+.. +-+...|..+..+|...|++++|.+.|++..+.  .|.+...+..+..++...++.+++.+
T Consensus       286 ~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~~~~~~~~~~~a~k  362 (370)
T 1ihg_A          286 MSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVKQKIKAQKDKEK  362 (370)
T ss_dssp             TTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999864 336788999999999999999999999999876  56477788888888888888877765


Q ss_pred             H
Q 048269          270 M  270 (465)
Q Consensus       270 ~  270 (465)
                      .
T Consensus       363 ~  363 (370)
T 1ihg_A          363 A  363 (370)
T ss_dssp             C
T ss_pred             H
Confidence            3

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.94  E-value=0.00011  Score=58.11  Aligned_cols=99  Identities=12%  Similarity=-0.002  Sum_probs=61.2

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHhhhC-------CC----------CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh
Q 048269          108 DKTFKIALMTLAEVRELKKMVNFFHIMNDC-------GC----------EYSLEMLNKVVKTLCQRKLVVEAKYLILKLS  170 (465)
Q Consensus       108 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~----------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~  170 (465)
                      ...+......+.+.|++++|+..|......       +-          +.+...|..+..+|.+.|++++|+..+++..
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al   90 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL   90 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            345677788888999999999999887764       00          1122445555555666666666666666655


Q ss_pred             cCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048269          171 EWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDE  206 (465)
Q Consensus       171 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  206 (465)
                      .-.+.+...|..+..+|...|++++|...|+...+.
T Consensus        91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  126 (162)
T 3rkv_A           91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN  126 (162)
T ss_dssp             HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence            333445555556666666666666666666655554

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.93  E-value=3.5e-05  Score=69.57  Aligned_cols=148  Identities=8%  Similarity=-0.117  Sum_probs=71.5

Q ss_pred             HHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 048269           74 SITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTL  153 (465)
Q Consensus        74 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~  153 (465)
                      ...+..+...+.+.|++++|...|++.....+.+.        .+...++.+++...+.          ...|..+..+|
T Consensus       179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~--------~~~~~~~~~~~~~~l~----------~~~~~nla~~~  240 (338)
T 2if4_A          179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF--------MFQLYGKYQDMALAVK----------NPCHLNIAACL  240 (338)
T ss_dssp             HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH--------HHTCCHHHHHHHHHHH----------THHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch--------hhhhcccHHHHHHHHH----------HHHHHHHHHHH
Confidence            34466677777788888888888888765543211        0111222222222110          12566677777


Q ss_pred             HcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-cHHHHHHHHHH-HHhcCCHHHH
Q 048269          154 CQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEP-SIDVVDKMIET-FFKINKDDEA  231 (465)
Q Consensus       154 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~-~~~~g~~~~A  231 (465)
                      .+.|++++|+..+++.....+.+...|..+..+|...|++++|...|+...+.  .| +...+..+... ....+..+.+
T Consensus       241 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~~a  318 (338)
T 2if4_A          241 IKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQKQ  318 (338)
T ss_dssp             HTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777777777776434556777777777777777777777777777654  23 33344444444 2334556667


Q ss_pred             HHHHHHHHHc
Q 048269          232 MKVFQMMRVK  241 (465)
Q Consensus       232 ~~~~~~m~~~  241 (465)
                      .+.|..|...
T Consensus       319 ~~~~~~~l~~  328 (338)
T 2if4_A          319 KEMYKGIFKG  328 (338)
T ss_dssp             ----------
T ss_pred             HHHHHHhhCC
Confidence            7777776644

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.92  E-value=0.00075  Score=65.24  Aligned_cols=178  Identities=8%  Similarity=-0.083  Sum_probs=148.1

Q ss_pred             cCCCChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCC----------hhHHHHHHHHHhhCCCCChHHHHHHHHH
Q 048269           48 NFPLSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRN----------IDLFWETLQEMGRRRLVNDKTFKIALMT  117 (465)
Q Consensus        48 ~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~l~~~  117 (465)
                      ......+.|++.++.++...+.   +..+|+.--.++.+.|+          ++++++.++.+.+.++.+..+|+.-...
T Consensus        40 ~~~~~~eeal~~~~~~l~~nP~---~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~  116 (567)
T 1dce_A           40 QAGELDESVLELTSQILGANPD---FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWL  116 (567)
T ss_dssp             HTTCCSHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HcCCCCHHHHHHHHHHHHHCch---hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            3344567899999999888877   88889888888877777          9999999999999999899999999999


Q ss_pred             HHhcC--CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCC-CHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhc----
Q 048269          118 LAEVR--ELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRK-LVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDV----  190 (465)
Q Consensus       118 ~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~----  190 (465)
                      +.+.+  +++++++.++.+.+.. +-+..+|+.-..++.+.| .++++++.++++....+-|..+|+.....+.+.    
T Consensus       117 l~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~  195 (567)
T 1dce_A          117 LSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP  195 (567)
T ss_dssp             HHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCC
T ss_pred             HHHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccc
Confidence            99999  7799999999999976 668899998888888888 899999999999866688899999888777663    


Q ss_pred             ----------CCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHH
Q 048269          191 ----------GDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDE  230 (465)
Q Consensus       191 ----------g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~  230 (465)
                                +.++++++.++...... +-+...|.-+-..+.+.++.++
T Consensus       196 ~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~  244 (567)
T 1dce_A          196 DSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV  244 (567)
T ss_dssp             CSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred             cccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence                      55789999998888753 3367778877777777766443

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=97.90  E-value=2.8e-05  Score=57.83  Aligned_cols=86  Identities=8%  Similarity=-0.006  Sum_probs=47.3

Q ss_pred             cCCHHHHHHHHHHhhhCC--CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 048269          121 VRELKKMVNFFHIMNDCG--CEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASK  198 (465)
Q Consensus       121 ~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~  198 (465)
                      .|++++|+..|++..+.+  -+.+...+..+..+|...|++++|+..|++.....+.+..++..+..++...|++++|+.
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~   82 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE   82 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence            455666666666666542  122344555566666666666666666666553334455566666666666666666666


Q ss_pred             HHHHHHHC
Q 048269          199 IWNLMTDE  206 (465)
Q Consensus       199 ~~~~m~~~  206 (465)
                      .|++..+.
T Consensus        83 ~~~~al~~   90 (117)
T 3k9i_A           83 LLLKIIAE   90 (117)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            66665543

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.85  E-value=0.00049  Score=53.43  Aligned_cols=94  Identities=9%  Similarity=-0.149  Sum_probs=54.0

Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHhhCCCC-------ChH-----HHHHHHHHHHhcCCHHHHHHHHHHhhhC-----
Q 048269           75 ITFNRMVDIIGKSRNIDLFWETLQEMGRRRLV-------NDK-----TFKIALMTLAEVRELKKMVNFFHIMNDC-----  137 (465)
Q Consensus        75 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-------~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----  137 (465)
                      ..+......+.+.|++++|+..|++..+..+.       +..     .|..+..++.+.|++++|+..++...+.     
T Consensus        12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~   91 (159)
T 2hr2_A           12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG   91 (159)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence            34455666677777777777777777665443       222     5566666666666666666666665553     


Q ss_pred             --CCCCCHHHH----HHHHHHHHcCCCHHHHHHHHHHh
Q 048269          138 --GCEYSLEML----NKVVKTLCQRKLVVEAKYLILKL  169 (465)
Q Consensus       138 --~~~~~~~~~----~~ll~~~~~~~~~~~a~~~~~~m  169 (465)
                        . +-+...|    .....++...|++++|+..|++.
T Consensus        92 e~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kA  128 (159)
T 2hr2_A           92 ELN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKV  128 (159)
T ss_dssp             CTT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cCC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHH
Confidence              2 2223344    44555555555555555555554

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.83  E-value=9.9e-05  Score=54.54  Aligned_cols=78  Identities=8%  Similarity=-0.114  Sum_probs=38.3

Q ss_pred             HHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 048269           56 VYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMN  135 (465)
Q Consensus        56 a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  135 (465)
                      |+..|+.++...+.   +...+..+...+...|++++|+..|++..+.++.+..++..+..++...|++++|...|+...
T Consensus         4 a~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al   80 (115)
T 2kat_A            4 ITERLEAMLAQGTD---NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL   80 (115)
T ss_dssp             HHHHHHHHHTTTCC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCC---cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            44444444333322   445555555555555555555555555554444444445555555555555555555555444


Q ss_pred             h
Q 048269          136 D  136 (465)
Q Consensus       136 ~  136 (465)
                      +
T Consensus        81 ~   81 (115)
T 2kat_A           81 A   81 (115)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.77  E-value=0.00012  Score=65.94  Aligned_cols=145  Identities=11%  Similarity=0.004  Sum_probs=75.8

Q ss_pred             HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHH
Q 048269          177 EIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVID  256 (465)
Q Consensus       177 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~  256 (465)
                      ...+..+...+.+.|++++|...|+...+.  .|+...       +...++.+++...+           ....|..+..
T Consensus       179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l-----------~~~~~~nla~  238 (338)
T 2if4_A          179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV-----------KNPCHLNIAA  238 (338)
T ss_dssp             HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH-----------HTHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH-----------HHHHHHHHHH
Confidence            445566666667777777777777776654  233321       12223333332221           1136777888


Q ss_pred             HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC--C-CHhhHHHHHHH-HHhcCCHHH
Q 048269          257 WMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK--P-DISLYHGLIKG-LLRLRRARE  332 (465)
Q Consensus       257 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~-~~~~~~~~~  332 (465)
                      +|.+.|++++|...+++..+.. +.+...+..+..+|...|++++|...|++...  | +...+..+... ....+..++
T Consensus       239 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~  317 (338)
T 2if4_A          239 CLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQK  317 (338)
T ss_dssp             HHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888888888887753 23677788888888888889999888888876  3 33344444443 233456777


Q ss_pred             HHHHHHHHHH
Q 048269          333 ATQVFREMIK  342 (465)
Q Consensus       333 a~~~~~~m~~  342 (465)
                      +..+|+.|..
T Consensus       318 a~~~~~~~l~  327 (338)
T 2if4_A          318 QKEMYKGIFK  327 (338)
T ss_dssp             ----------
T ss_pred             HHHHHHHhhC
Confidence            7888888873

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.76  E-value=0.00018  Score=67.95  Aligned_cols=60  Identities=10%  Similarity=-0.077  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHhh----c----CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048269          145 MLNKVVKTLCQRKLVVEAKYLILKLS----E----WIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMT  204 (465)
Q Consensus       145 ~~~~ll~~~~~~~~~~~a~~~~~~m~----~----~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  204 (465)
                      +++.|..+|...|++++|+.++++..    .    ..+....+++.|...|...|++++|+.++++..
T Consensus       353 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al  420 (490)
T 3n71_A          353 LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAY  420 (490)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            34445555555555555555444432    0    011122344445555555555555555444443

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.75  E-value=0.00027  Score=49.27  Aligned_cols=81  Identities=7%  Similarity=-0.007  Sum_probs=52.5

Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 048269           73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKT  152 (465)
Q Consensus        73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~  152 (465)
                      +...+..+...+...|++++|...|++..+..+.+..++..+...+.+.|++++|+..|++..+.. +.+...+..+..+
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~   86 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA   86 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence            345566666777777777777777777766665566667777777777777777777777766643 3345555555444


Q ss_pred             HH
Q 048269          153 LC  154 (465)
Q Consensus       153 ~~  154 (465)
                      +.
T Consensus        87 ~~   88 (91)
T 1na3_A           87 KQ   88 (91)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.74  E-value=0.00016  Score=68.33  Aligned_cols=123  Identities=9%  Similarity=-0.042  Sum_probs=90.8

Q ss_pred             HHHhcCChhHHHHHHHHHhhC-----CCC---ChHHHHHHHHHHHhcCCHHHHHHHHHHhhh-----CC-CCC-CHHHHH
Q 048269           83 IIGKSRNIDLFWETLQEMGRR-----RLV---NDKTFKIALMTLAEVRELKKMVNFFHIMND-----CG-CEY-SLEMLN  147 (465)
Q Consensus        83 ~~~~~g~~~~a~~~~~~~~~~-----~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~-~~~-~~~~~~  147 (465)
                      .+...|++++|+.++++..+.     |..   ...+++.+...|...|++++|+.++++..+     .| -.| ...+++
T Consensus       318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~  397 (490)
T 3n71_A          318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM  397 (490)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            456789999999999887642     221   245889999999999999999999998765     22 122 345688


Q ss_pred             HHHHHHHcCCCHHHHHHHHHHhh------cC-CCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048269          148 KVVKTLCQRKLVVEAKYLILKLS------EW-IKP-NEIAYGWLIKGYCDVGDLIEASKIWNLMTD  205 (465)
Q Consensus       148 ~ll~~~~~~~~~~~a~~~~~~m~------~~-~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  205 (465)
                      .|...|...|++++|+.++++..      -| ..| ...+.+.+-.++...+.+++|+.+|..+++
T Consensus       398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~  463 (490)
T 3n71_A          398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE  463 (490)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998865      11 112 233445566666677778888888877765

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.71  E-value=0.0013  Score=51.05  Aligned_cols=96  Identities=8%  Similarity=-0.120  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC-C-----CH-----HHHHHHHHHHHcCCCHHHHHHHHHHhhcC------
Q 048269          110 TFKIALMTLAEVRELKKMVNFFHIMNDCGCE-Y-----SL-----EMLNKVVKTLCQRKLVVEAKYLILKLSEW------  172 (465)
Q Consensus       110 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-----~~-----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~------  172 (465)
                      .+......+.+.|++++|+..|+...+.... |     +.     ..|+.+..++.+.|++++|+..+++...-      
T Consensus        13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e   92 (159)
T 2hr2_A           13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE   92 (159)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence            4556667778888899999888888775311 0     12     25666666666667777666666665532      


Q ss_pred             -CCCCHHhH----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 048269          173 -IKPNEIAY----GWLIKGYCDVGDLIEASKIWNLMTD  205 (465)
Q Consensus       173 -~~~~~~~~----~~li~~~~~~g~~~~a~~~~~~m~~  205 (465)
                       .+.+...|    .....++...|++++|+..|++..+
T Consensus        93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle  130 (159)
T 2hr2_A           93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE  130 (159)
T ss_dssp             TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence             23344455    5555566666666666666665544

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.70  E-value=0.00031  Score=51.75  Aligned_cols=79  Identities=15%  Similarity=-0.101  Sum_probs=71.3

Q ss_pred             hHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh
Q 048269           91 DLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLS  170 (465)
Q Consensus        91 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~  170 (465)
                      +.|+..|++..+.++.+...+..+...+...|++++|+..|+...+.. +.+...|..+..++...|++++|...|++..
T Consensus         2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al   80 (115)
T 2kat_A            2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL   80 (115)
T ss_dssp             CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            457888999988888888999999999999999999999999999875 5568889999999999999999999999987

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.65  E-value=0.0012  Score=50.46  Aligned_cols=110  Identities=9%  Similarity=-0.077  Sum_probs=47.6

Q ss_pred             ChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHc----CCCHHHHHH
Q 048269           89 NIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQ----RKLVVEAKY  164 (465)
Q Consensus        89 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~  164 (465)
                      ++++|.+.|++..+.|.+...    +...|...+..++|++.|+...+.|   +...+..|...|..    .++.++|.+
T Consensus        10 d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~   82 (138)
T 1klx_A           10 DLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQ   82 (138)
T ss_dssp             HHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred             CHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence            344455555544444433222    3333444444444555554444432   33444444444443    344444444


Q ss_pred             HHHHhhcCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 048269          165 LILKLSEWIKPNEIAYGWLIKGYCD----VGDLIEASKIWNLMTDEG  207 (465)
Q Consensus       165 ~~~~m~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g  207 (465)
                      +|++...  .-+...+..|...|..    .++.++|..+|+...+.|
T Consensus        83 ~~~~Aa~--~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A           83 YYSKACG--LNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             HHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHc--CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence            4444431  1233344444444444    444444444444444443

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.59  E-value=0.0026  Score=48.60  Aligned_cols=77  Identities=14%  Similarity=0.050  Sum_probs=30.9

Q ss_pred             CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHh----cCCHHHHHH
Q 048269          123 ELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCD----VGDLIEASK  198 (465)
Q Consensus       123 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~----~g~~~~a~~  198 (465)
                      ++++|++.|+...+.| .++..    +...|...+.+++|.++|++...  .-+...+..|...|..    .+++++|..
T Consensus        10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~--~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~   82 (138)
T 1klx_A           10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACE--LNSGNGCRFLGDFYENGKYVKKDLRKAAQ   82 (138)
T ss_dssp             HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred             CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence            3444444444444443 22221    33333333444444444444331  1233344444444443    344444444


Q ss_pred             HHHHHHHC
Q 048269          199 IWNLMTDE  206 (465)
Q Consensus       199 ~~~~m~~~  206 (465)
                      +|++..+.
T Consensus        83 ~~~~Aa~~   90 (138)
T 1klx_A           83 YYSKACGL   90 (138)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHcC
Confidence            44444443

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.57  E-value=9.7e-05  Score=53.97  Aligned_cols=60  Identities=8%  Similarity=-0.090  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh
Q 048269          110 TFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLS  170 (465)
Q Consensus       110 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~  170 (465)
                      .+..+...+...|++++|+..|+...+.. +.+...+..+..++...|++++|+..+++..
T Consensus         6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al   65 (111)
T 2l6j_A            6 KQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGL   65 (111)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            34444445555555555555555544432 2344444444455555555555555555544

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.51  E-value=0.0011  Score=45.96  Aligned_cols=76  Identities=11%  Similarity=-0.042  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHH
Q 048269          110 TFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKG  186 (465)
Q Consensus       110 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~  186 (465)
                      .+..+...+...|++++|+..|+...+.. +.+...+..+..++...|++++|...+++.....+.+...+..+..+
T Consensus        11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~   86 (91)
T 1na3_A           11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA   86 (91)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            44444555555555555555555554432 23344444555555555555555555555442223333444433333

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.50  E-value=0.00046  Score=53.46  Aligned_cols=93  Identities=11%  Similarity=0.026  Sum_probs=58.1

Q ss_pred             hhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCCh----------hHHHHHHHHHhhCCCCChHHHHHHHHHHHhcC
Q 048269           53 WRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNI----------DLFWETLQEMGRRRLVNDKTFKIALMTLAEVR  122 (465)
Q Consensus        53 ~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  122 (465)
                      ++.|+..++.++...|.   +...|+.+-.++.+.+++          ++|+..|++..+.++....+|..+..+|...|
T Consensus        18 feeA~~~~~~Ai~l~P~---~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg   94 (158)
T 1zu2_A           18 FEQIRQDAENTYKSNPL---DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA   94 (158)
T ss_dssp             HHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence            45666777776666655   677777777677666654          36777777776666666666666666666553


Q ss_pred             -----------CHHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 048269          123 -----------ELKKMVNFFHIMNDCGCEYSLEMLNKVV  150 (465)
Q Consensus       123 -----------~~~~a~~~~~~~~~~~~~~~~~~~~~ll  150 (465)
                                 ++++|++.|++..+.  .|+...|...+
T Consensus        95 ~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al  131 (158)
T 1zu2_A           95 FLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSL  131 (158)
T ss_dssp             HHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred             ccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence                       566666666666654  34444443333

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.48  E-value=0.00064  Score=48.66  Aligned_cols=64  Identities=8%  Similarity=-0.052  Sum_probs=50.4

Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048269           73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMND  136 (465)
Q Consensus        73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  136 (465)
                      ++..+..+...+.+.|++++|+..|++..+.++.+..+|..+..++...|++++|++.|++..+
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~   69 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE   69 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            6777777888888888888888888888777776667778888888888888888888877665

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.42  E-value=0.00064  Score=48.65  Aligned_cols=63  Identities=6%  Similarity=-0.110  Sum_probs=41.8

Q ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh
Q 048269          107 NDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLS  170 (465)
Q Consensus       107 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~  170 (465)
                      +..++..+...+.+.|++++|+..|+...+.. +.+...|..+..+|...|++++|++.|++..
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al   68 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI   68 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            45566666777777777777777777766654 3345566666677777777777777766654

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.28  E-value=0.00063  Score=52.69  Aligned_cols=109  Identities=11%  Similarity=0.055  Sum_probs=55.4

Q ss_pred             HhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 048269           85 GKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKY  164 (465)
Q Consensus        85 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~  164 (465)
                      .+.+.+++|.+.++...+.++.+...|..+..++...++++.+...++                         .+++|+.
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~-------------------------~~~eAi~   67 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQ-------------------------MIQEAIT   67 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHH-------------------------HHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHh-------------------------HHHHHHH
Confidence            344556666666666666666666666666666666555431111110                         1335555


Q ss_pred             HHHHhhcCCCCCHHhHHHHHHHHHhc-----------CCHHHHHHHHHHHHHCCCCCcHHHHHHHHH
Q 048269          165 LILKLSEWIKPNEIAYGWLIKGYCDV-----------GDLIEASKIWNLMTDEGFEPSIDVVDKMIE  220 (465)
Q Consensus       165 ~~~~m~~~~~~~~~~~~~li~~~~~~-----------g~~~~a~~~~~~m~~~g~~~~~~~~~~li~  220 (465)
                      .|++...-.+.+..+|..+..+|...           |++++|++.|++..+.  .|+...|...+.
T Consensus        68 ~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~  132 (158)
T 1zu2_A           68 KFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE  132 (158)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred             HHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence            55554422233444455555555443           3566666666666654  455444433333

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.08  E-value=0.016  Score=51.68  Aligned_cols=66  Identities=14%  Similarity=-0.096  Sum_probs=39.7

Q ss_pred             CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048269          174 KPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVK  241 (465)
Q Consensus       174 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  241 (465)
                      +.+..+|..+...+...|++++|...++++...+  |+...|..+...+.-.|++++|.+.|++....
T Consensus       274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL  339 (372)
T 3ly7_A          274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL  339 (372)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            4555566655555555566666666666666653  55555555556666666666666666665544

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.02  E-value=0.03  Score=49.92  Aligned_cols=143  Identities=10%  Similarity=-0.063  Sum_probs=96.0

Q ss_pred             CCHHhHHHHHHHHHh--cC---ChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhc---C--CHHHH---HHHHHHhhh-C
Q 048269           72 HNSITFNRMVDIIGK--SR---NIDLFWETLQEMGRRRLVNDKTFKIALMTLAEV---R--ELKKM---VNFFHIMND-C  137 (465)
Q Consensus        72 ~~~~~~~~l~~~~~~--~g---~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~--~~~~a---~~~~~~~~~-~  137 (465)
                      .+...|...+++...  .+   +..+|..+|++..+.++-....+..+..++...   +  .....   ...+..... .
T Consensus       192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~  271 (372)
T 3ly7_A          192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLP  271 (372)
T ss_dssp             SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCG
T ss_pred             CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcc
Confidence            366667666655432  23   356889999999988876666666555544311   1  11111   111221111 1


Q ss_pred             CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHH
Q 048269          138 GCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDK  217 (465)
Q Consensus       138 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~  217 (465)
                      ..+.+..+|..+...+...|++++|...+++...- .|+...|..+...+.-.|++++|.+.|++....  .|...+|..
T Consensus       272 ~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L-n~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~~  348 (372)
T 3ly7_A          272 ELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL-EMSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLYW  348 (372)
T ss_dssp             GGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHHH
T ss_pred             cCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHHH
Confidence            22567888888877777789999999999998821 378888888889999999999999999998876  577776643

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=96.95  E-value=0.0024  Score=45.29  Aligned_cols=59  Identities=10%  Similarity=0.153  Sum_probs=43.1

Q ss_pred             HHHHHHhcCChhHHHHHHHHHhhCCCCChH-HHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 048269           80 MVDIIGKSRNIDLFWETLQEMGRRRLVNDK-TFKIALMTLAEVRELKKMVNFFHIMNDCG  138 (465)
Q Consensus        80 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  138 (465)
                      ....+.+.|++++|+..|++..+.++.+.. .+..+..++...|++++|+..|+...+..
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~   65 (99)
T 2kc7_A            6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN   65 (99)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            445666777777888877777777666666 77777777777777777777777777654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.81  E-value=0.04  Score=55.96  Aligned_cols=155  Identities=12%  Similarity=0.057  Sum_probs=91.5

Q ss_pred             HHHhcCCHHHHHH-HHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHH
Q 048269          117 TLAEVRELKKMVN-FFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIE  195 (465)
Q Consensus       117 ~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~  195 (465)
                      .....+++++|.+ ++..+.      +......++..+.+.|..+.|.++.+.-.           .-.......|+++.
T Consensus       608 ~~~~~~~~~~a~~~~l~~i~------~~~~~~~~~~~l~~~~~~~~a~~~~~~~~-----------~~f~~~l~~~~~~~  670 (814)
T 3mkq_A          608 TLTLRGEIEEAIENVLPNVE------GKDSLTKIARFLEGQEYYEEALNISPDQD-----------QKFELALKVGQLTL  670 (814)
T ss_dssp             HHHHTTCHHHHHHHTGGGCC------CHHHHHHHHHHHHHTTCHHHHHHHCCCHH-----------HHHHHHHHHTCHHH
T ss_pred             HHHHhCCHHHHHHHHHhcCC------chHHHHHHHHHHHhCCChHHheecCCCcc-----------hheehhhhcCCHHH
Confidence            3345667777665 432211      12223566666777777777766543211           11233456678888


Q ss_pred             HHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 048269          196 ASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMF  275 (465)
Q Consensus       196 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  275 (465)
                      |.++.+.+      .+...|..+...+.+.|+++.|.++|..+.          -|..+...|...|+.+...++-+...
T Consensus       671 A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~----------d~~~l~~l~~~~~~~~~~~~~~~~a~  734 (814)
T 3mkq_A          671 ARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAH----------DLESLFLLHSSFNNKEGLVTLAKDAE  734 (814)
T ss_dssp             HHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT----------CHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc----------ChhhhHHHHHHcCCHHHHHHHHHHHH
Confidence            77765433      366778888888888888888888887653          13445555556777766666665555


Q ss_pred             HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 048269          276 KRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIE  310 (465)
Q Consensus       276 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~  310 (465)
                      ..|.      ++....+|.+.|++++|.+++.++.
T Consensus       735 ~~~~------~~~A~~~~~~~g~~~~a~~~~~~~~  763 (814)
T 3mkq_A          735 TTGK------FNLAFNAYWIAGDIQGAKDLLIKSQ  763 (814)
T ss_dssp             HTTC------HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred             HcCc------hHHHHHHHHHcCCHHHHHHHHHHcC
Confidence            5432      2334445666677777777665543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.81  E-value=0.092  Score=53.25  Aligned_cols=103  Identities=6%  Similarity=-0.112  Sum_probs=55.1

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCC
Q 048269           78 NRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRK  157 (465)
Q Consensus        78 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~  157 (465)
                      ..++..+.+.|.+++|+++.+.-.           .-.......|+++.|.++.+.+      .+...|..+...+.+.|
T Consensus       633 ~~~~~~l~~~~~~~~a~~~~~~~~-----------~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~  695 (814)
T 3mkq_A          633 TKIARFLEGQEYYEEALNISPDQD-----------QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRF  695 (814)
T ss_dssp             HHHHHHHHHTTCHHHHHHHCCCHH-----------HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhCCChHHheecCCCcc-----------hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcC
Confidence            556666666666666665442110           1122334556666666664332      34556666666666666


Q ss_pred             CHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048269          158 LVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTD  205 (465)
Q Consensus       158 ~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  205 (465)
                      +++.|++.|.++.        -|..+...|...|+.+...++-+....
T Consensus       696 ~~~~A~~~y~~~~--------d~~~l~~l~~~~~~~~~~~~~~~~a~~  735 (814)
T 3mkq_A          696 NFKLAIEAFTNAH--------DLESLFLLHSSFNNKEGLVTLAKDAET  735 (814)
T ss_dssp             CHHHHHHHHHHHT--------CHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcc--------ChhhhHHHHHHcCCHHHHHHHHHHHHH
Confidence            6666666666664        133444444445555554444444433

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=96.64  E-value=0.0057  Score=56.67  Aligned_cols=83  Identities=8%  Similarity=-0.101  Sum_probs=47.2

Q ss_pred             CCHHHHHHHHHHhh----cCCCC----CHHhHHHHHHHHHhcCCHHHHHHHHHHHHH-----CC-CCCc-HHHHHHHHHH
Q 048269          157 KLVVEAKYLILKLS----EWIKP----NEIAYGWLIKGYCDVGDLIEASKIWNLMTD-----EG-FEPS-IDVVDKMIET  221 (465)
Q Consensus       157 ~~~~~a~~~~~~m~----~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g-~~~~-~~~~~~li~~  221 (465)
                      |++++|+.++++..    .-+.|    ...+++.|..+|...|++++|+.++++..+     .| -.|+ ..+++.|...
T Consensus       312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~  391 (433)
T 3qww_A          312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL  391 (433)
T ss_dssp             SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence            45555655555543    11111    235566666667777777777666666654     12 1222 3456667777


Q ss_pred             HHhcCCHHHHHHHHHHHH
Q 048269          222 FFKINKDDEAMKVFQMMR  239 (465)
Q Consensus       222 ~~~~g~~~~A~~~~~~m~  239 (465)
                      |...|++++|+.++++..
T Consensus       392 ~~~qg~~~eA~~~~~~Al  409 (433)
T 3qww_A          392 YMGLENKAAGEKALKKAI  409 (433)
T ss_dssp             HHHTTCHHHHHHHHHHHH
T ss_pred             HHhccCHHHHHHHHHHHH
Confidence            777777777776666654

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.56  E-value=0.029  Score=52.02  Aligned_cols=91  Identities=13%  Similarity=0.025  Sum_probs=53.1

Q ss_pred             HHHHHhcCCHHHHHHHHHHhhhCC---CCC----CHHHHHHHHHHHHcCCCHHHHHHHHHHhh----c----CCCCCHHh
Q 048269          115 LMTLAEVRELKKMVNFFHIMNDCG---CEY----SLEMLNKVVKTLCQRKLVVEAKYLILKLS----E----WIKPNEIA  179 (465)
Q Consensus       115 ~~~~~~~~~~~~a~~~~~~~~~~~---~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~m~----~----~~~~~~~~  179 (465)
                      +..+.+.|++++|+..+++..+..   +.|    ...+++.+..+|...|++++|+.++++..    .    ..+....+
T Consensus       294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~  373 (429)
T 3qwp_A          294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ  373 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence            334445666777777766665421   111    23456666667777777777776666644    1    11122455


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048269          180 YGWLIKGYCDVGDLIEASKIWNLMTD  205 (465)
Q Consensus       180 ~~~li~~~~~~g~~~~a~~~~~~m~~  205 (465)
                      ++.|...|...|++++|+.++++..+
T Consensus       374 l~nLa~~~~~~g~~~eA~~~~~~Al~  399 (429)
T 3qwp_A          374 VMKVGKLQLHQGMFPQAMKNLRLAFD  399 (429)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            66777777777777777777766654

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.51  E-value=0.009  Score=55.43  Aligned_cols=87  Identities=13%  Similarity=-0.072  Sum_probs=69.2

Q ss_pred             HcCCCHHHHHHHHHHhh----cCCCC----CHHhHHHHHHHHHhcCCHHHHHHHHHHHHH-----CC-CCC-cHHHHHHH
Q 048269          154 CQRKLVVEAKYLILKLS----EWIKP----NEIAYGWLIKGYCDVGDLIEASKIWNLMTD-----EG-FEP-SIDVVDKM  218 (465)
Q Consensus       154 ~~~~~~~~a~~~~~~m~----~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g-~~~-~~~~~~~l  218 (465)
                      .+.|++++|+.++++..    .-+.|    ...+++.|...|...|++++|+.++++..+     .| -.| ...+++.|
T Consensus       298 ~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nL  377 (429)
T 3qwp_A          298 KAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKV  377 (429)
T ss_dssp             HHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred             HhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHH
Confidence            35789999999999876    11222    256789999999999999999999998875     22 223 35678999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHH
Q 048269          219 IETFFKINKDDEAMKVFQMMRV  240 (465)
Q Consensus       219 i~~~~~~g~~~~A~~~~~~m~~  240 (465)
                      ...|...|++++|..++++..+
T Consensus       378 a~~~~~~g~~~eA~~~~~~Al~  399 (429)
T 3qwp_A          378 GKLQLHQGMFPQAMKNLRLAFD  399 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCHHHHHHHHHHHHH
Confidence            9999999999999999988654

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=96.49  E-value=0.01  Score=55.04  Aligned_cols=86  Identities=12%  Similarity=0.020  Sum_probs=67.4

Q ss_pred             CCHHHHHHHHHHHHHC---CCCC----cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC-CCCCcchHHHHHHH
Q 048269          191 GDLIEASKIWNLMTDE---GFEP----SIDVVDKMIETFFKINKDDEAMKVFQMMRVK-----RM-DDLGLSTYRIVIDW  257 (465)
Q Consensus       191 g~~~~a~~~~~~m~~~---g~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~-~~~~~~~~~~li~~  257 (465)
                      |++++|+.++++..+.   -+.|    ...+++.|..+|...|++++|+.++++..+-     |. .|....+++.|...
T Consensus       312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~  391 (433)
T 3qww_A          312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL  391 (433)
T ss_dssp             SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence            6899999999887652   1122    3578999999999999999999999887642     22 23234578999999


Q ss_pred             HHhcCChHHHHHHHHHHHH
Q 048269          258 MCKRGKISQAYTMLEEMFK  276 (465)
Q Consensus       258 ~~~~~~~~~a~~~~~~m~~  276 (465)
                      |...|++++|..++++..+
T Consensus       392 ~~~qg~~~eA~~~~~~Al~  410 (433)
T 3qww_A          392 YMGLENKAAGEKALKKAIA  410 (433)
T ss_dssp             HHHTTCHHHHHHHHHHHHH
T ss_pred             HHhccCHHHHHHHHHHHHH
Confidence            9999999999999998764

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=96.47  E-value=0.22  Score=39.08  Aligned_cols=101  Identities=10%  Similarity=0.038  Sum_probs=58.6

Q ss_pred             HHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHH
Q 048269           82 DIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVE  161 (465)
Q Consensus        82 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~  161 (465)
                      ....+.|+++.|.++.+.+     .+...|..+.....+.|+++-|++.|.....         +..+.-.|.-.|+.+.
T Consensus        13 ~LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~   78 (177)
T 3mkq_B           13 DLALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNK   78 (177)
T ss_dssp             HHHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHH
T ss_pred             HHHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHH
Confidence            3445667777777766655     2455677777777777777777777766654         3344445555666655


Q ss_pred             HHHHHHHhh-cCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 048269          162 AKYLILKLS-EWIKPNEIAYGWLIKGYCDVGDLIEASKIWNL  202 (465)
Q Consensus       162 a~~~~~~m~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  202 (465)
                      ..++-+... .|      -++.-...+...|+++++.++|.+
T Consensus        79 L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~  114 (177)
T 3mkq_B           79 LSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE  114 (177)
T ss_dssp             HHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence            554444433 21      234444445555677776666644

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.41  E-value=0.034  Score=38.82  Aligned_cols=67  Identities=6%  Similarity=0.002  Sum_probs=53.0

Q ss_pred             CCHHhHHHHHHHHHhcCC---hhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 048269           72 HNSITFNRMVDIIGKSRN---IDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCG  138 (465)
Q Consensus        72 ~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  138 (465)
                      .|+..+..+..++...++   .++|..++++..+.++.+..+...+...+.+.|++++|+..|+.+.+..
T Consensus         4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~   73 (93)
T 3bee_A            4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN   73 (93)
T ss_dssp             CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred             CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            467777777777765544   6888888888888888888888888888888888888888888888754

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=96.37  E-value=0.014  Score=41.07  Aligned_cols=55  Identities=4%  Similarity=-0.103  Sum_probs=29.8

Q ss_pred             HHHHHhcCCHHHHHHHHHHhhhCCCCCCHH-HHHHHHHHHHcCCCHHHHHHHHHHhh
Q 048269          115 LMTLAEVRELKKMVNFFHIMNDCGCEYSLE-MLNKVVKTLCQRKLVVEAKYLILKLS  170 (465)
Q Consensus       115 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~  170 (465)
                      ...+.+.|++++|+..|+...+.. +.+.. .+..+..++...|++++|++.|++..
T Consensus         7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al   62 (99)
T 2kc7_A            7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAI   62 (99)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            344455566666666666555543 23344 55555555555556666655555554

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=96.17  E-value=0.068  Score=38.15  Aligned_cols=65  Identities=5%  Similarity=-0.059  Sum_probs=40.0

Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHhhC-------CCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 048269           73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRR-------RLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDC  137 (465)
Q Consensus        73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  137 (465)
                      +...+..+...+.+.|+++.|...|+...+.       +.....++..+..++.+.|+++.|+..++.+.+.
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l   75 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence            4555566666677777777777666665542       2233455666666666666666666666666654

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.15  E-value=0.06  Score=37.51  Aligned_cols=77  Identities=6%  Similarity=-0.224  Sum_probs=59.1

Q ss_pred             CCchHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHhhccchHHHHHHHHHHHHcCCCCchhH
Q 048269          369 DPLVNFDTIFVGGLVKAGK---SLDAAKYVERVMNRGVEVP-RFDYNKFLHYYSNEEGVVMFEEVGKKLREVGLADLADI  444 (465)
Q Consensus       369 ~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~  444 (465)
                      +.|+..+..+..++...++   .++|..++++..+  +.|+ ......+...+.+.|++++|...|+++.+..-.  ++.
T Consensus         3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~--~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~--~~~   78 (93)
T 3bee_A            3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ--LEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP--NLD   78 (93)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT--TCC
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--Ccc
Confidence            4566777777777765555   7999999999998  4564 558888889999999999999999999987544  333


Q ss_pred             HHHHH
Q 048269          445 FQRYG  449 (465)
Q Consensus       445 ~~~~~  449 (465)
                      .....
T Consensus        79 ~~~i~   83 (93)
T 3bee_A           79 RVTII   83 (93)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44333

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=95.95  E-value=0.44  Score=37.43  Aligned_cols=129  Identities=15%  Similarity=0.085  Sum_probs=85.6

Q ss_pred             HHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHH
Q 048269          116 MTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIE  195 (465)
Q Consensus       116 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~  195 (465)
                      ......|+++.|.++.+.+      .+...|..|.......|+++-|++.|.+..        -+..+.-.|.-.|+.+.
T Consensus        13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~--------D~~~L~~Ly~~tg~~e~   78 (177)
T 3mkq_B           13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQH--------SFDKLSFLYLVTGDVNK   78 (177)
T ss_dssp             HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT--------CHHHHHHHHHHHTCHHH
T ss_pred             HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC--------CHHHHHHHHHHhCCHHH
Confidence            4455678888888887665      357788888888888888888888888876        24556666677788777


Q ss_pred             HHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 048269          196 ASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEM  274 (465)
Q Consensus       196 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m  274 (465)
                      ..++-+.....|-      ++....++.-.|+++++.++|.+.   |..|       --.-.....|..+.|.++.+++
T Consensus        79 L~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~---~r~~-------eA~~~A~t~g~~~~a~~~~~~~  141 (177)
T 3mkq_B           79 LSKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEG---GSLP-------LAYAVAKANGDEAAASAFLEQA  141 (177)
T ss_dssp             HHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHT---TCHH-------HHHHHHHHTTCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHC---CChH-------HHHHHHHHcCcHHHHHHHHHHh
Confidence            7766666555541      455566667778888888887542   2222       1111122356666777776655

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=95.83  E-value=1.9e-06  Score=78.02  Aligned_cols=270  Identities=10%  Similarity=0.073  Sum_probs=174.0

Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 048269           73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKT  152 (465)
Q Consensus        73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~  152 (465)
                      .+.+|..|..+..+.+++.+|++.|-+..     ++..|..++.+..+.|.+++-+..+....+..  .++.+=+.|+-+
T Consensus        53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA~-----Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~a  125 (624)
T 3lvg_A           53 EPAVWSQLAKAQLQKGMVKEAIDSYIKAD-----DPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFA  125 (624)
T ss_dssp             CCCCSSSHHHHTTTSSSCTTTTTSSCCCS-----CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHH
T ss_pred             CccHHHHHHHHHHccCchHHHHHHHHhCC-----ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHH
Confidence            56778888888888888888876663321     33457888888888888888888887766643  334444578888


Q ss_pred             HHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 048269          153 LCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAM  232 (465)
Q Consensus       153 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~  232 (465)
                      |++.++..+..+++.      .||..-...+.+-|...|.++.|.-+|..+..         |..|..++++.|++..|.
T Consensus       126 yAk~~rL~elEefl~------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq~AV  190 (624)
T 3lvg_A          126 LAKTNRLAELEEFIN------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAV  190 (624)
T ss_dssp             HHTSCSSSTTTSTTS------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGGSST
T ss_pred             HHhhCcHHHHHHHHc------CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHHHHH
Confidence            888888665443322      46666667777888888888877766654422         445556667777777665


Q ss_pred             HHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC-
Q 048269          233 KVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK-  311 (465)
Q Consensus       233 ~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-  311 (465)
                      +.-+       +..++.||..+-.+|...+++.-|.-.--.++-.     +.-...++..|.+.|-+++-+.+++.-.. 
T Consensus       191 daAr-------KAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglgl  258 (624)
T 3lvg_A          191 DGAR-------KANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGL  258 (624)
T ss_dssp             TTTT-------TCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTS
T ss_pred             HHHH-------hcCChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCC
Confidence            5432       2227778888888888888776665443333322     11223456667788888888888877665 


Q ss_pred             --CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcCCHH
Q 048269          312 --PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSL  389 (465)
Q Consensus       312 --~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  389 (465)
                        .....|+-|.-.|++- ++++..+.++..-.+   .|   ..-++++|          -....|..++-.|.+-.+++
T Consensus       259 ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sr---iN---ipKvirac----------E~ahLW~ElvfLY~~ydE~D  321 (624)
T 3lvg_A          259 ERAHMGMFTELAILYSKF-KPQKMREHLELFWSR---VN---IPKVLRAA----------EQAHLWAELVFLYDKYEEYD  321 (624)
T ss_dssp             TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSS---SC---CTTTHHHH----------TTTTCHHHHHHHHHHHTCHH
T ss_pred             CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHh---cc---HHHHHHHH----------HHHhhHHHHHHHHhcchhHH
Confidence              6666777777777765 344444444332211   11   11245555          24556788888888888888


Q ss_pred             HHHH
Q 048269          390 DAAK  393 (465)
Q Consensus       390 ~A~~  393 (465)
                      .|..
T Consensus       322 nA~l  325 (624)
T 3lvg_A          322 NAII  325 (624)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7654

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=95.82  E-value=0.058  Score=41.25  Aligned_cols=78  Identities=13%  Similarity=0.009  Sum_probs=40.4

Q ss_pred             HHHHHHHHHhhCCCCChHHHHHHHHHHHhcC---CHHHHHHHHHHhhhCCCCC--CHHHHHHHHHHHHcCCCHHHHHHHH
Q 048269           92 LFWETLQEMGRRRLVNDKTFKIALMTLAEVR---ELKKMVNFFHIMNDCGCEY--SLEMLNKVVKTLCQRKLVVEAKYLI  166 (465)
Q Consensus        92 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~  166 (465)
                      .+.+.|++..+.+.++..+...+..++++.+   +.++++.+|+.+.+.+ .|  +...+-.+.-++.+.|++++|.+++
T Consensus        16 ~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~   94 (152)
T 1pc2_A           16 KFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYV   94 (152)
T ss_dssp             HHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             HHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence            3444444444455555555555555555555   4445666665555543 12  2333334444555566666666666


Q ss_pred             HHhh
Q 048269          167 LKLS  170 (465)
Q Consensus       167 ~~m~  170 (465)
                      +.+.
T Consensus        95 ~~lL   98 (152)
T 1pc2_A           95 RGLL   98 (152)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5555

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=95.79  E-value=0.1  Score=37.20  Aligned_cols=65  Identities=11%  Similarity=-0.031  Sum_probs=34.6

Q ss_pred             HHhHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048269          177 EIAYGWLIKGYCDVGDLIEASKIWNLMTDE------GFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVK  241 (465)
Q Consensus       177 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  241 (465)
                      ...+..|...+.+.|+++.|...|+...+.      +-.+...++..+..++.+.|+++.|...+++..+.
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l   75 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence            334445555555555555555555555442      01223455556666666666666666666665543

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=95.68  E-value=0.89  Score=38.94  Aligned_cols=92  Identities=14%  Similarity=0.062  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHHHCCCCCc---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhc-CC
Q 048269          193 LIEASKIWNLMTDEGFEPS---IDVVDKMIETFFKI-----NKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKR-GK  263 (465)
Q Consensus       193 ~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~-~~  263 (465)
                      ...|...+++..+.  .|+   ...|..+...|.+.     |+.++|.+.|++..+.+..- +..++......++.. |+
T Consensus       179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~-~id~~v~YA~~l~~~~gd  255 (301)
T 3u64_A          179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAH-DPDHHITYADALCIPLNN  255 (301)
T ss_dssp             HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTT-CSHHHHHHHHHTTTTTTC
T ss_pred             HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCC-CchHHHHHHHHHHHhcCC
Confidence            35566666666664  454   45677777777773     78888888888877663221 366666777777774 78


Q ss_pred             hHHHHHHHHHHHHCCCC--CCHHHHH
Q 048269          264 ISQAYTMLEEMFKRGIE--ADNLTLS  287 (465)
Q Consensus       264 ~~~a~~~~~~m~~~~~~--~~~~~~~  287 (465)
                      .+.+.+.+++.......  |+....+
T Consensus       256 ~~~a~~~L~kAL~a~p~~~P~~~lan  281 (301)
T 3u64_A          256 RAGFDEALDRALAIDPESVPHNKLLV  281 (301)
T ss_dssp             HHHHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCCCChhHHH
Confidence            88888888888776555  5544333

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=95.52  E-value=0.1  Score=39.93  Aligned_cols=80  Identities=15%  Similarity=0.019  Sum_probs=41.8

Q ss_pred             HHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHhhcCCCC--CHHhHHHHHHHHHhcCCHHHHHHHH
Q 048269          126 KMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRK---LVVEAKYLILKLSEWIKP--NEIAYGWLIKGYCDVGDLIEASKIW  200 (465)
Q Consensus       126 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~m~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~  200 (465)
                      .+.+-|.+..+.| .++..+...+..++++++   ++++++.+|++......|  +...+-.|.-+|.+.|++++|.+.+
T Consensus        16 ~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~   94 (152)
T 1pc2_A           16 KFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV   94 (152)
T ss_dssp             HHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             HHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence            3444444444444 355555555556666655   445666666665522122  2333344444556666666666666


Q ss_pred             HHHHHC
Q 048269          201 NLMTDE  206 (465)
Q Consensus       201 ~~m~~~  206 (465)
                      +.+.+.
T Consensus        95 ~~lL~i  100 (152)
T 1pc2_A           95 RGLLQT  100 (152)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            666554

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=95.48  E-value=2.3e-05  Score=71.23  Aligned_cols=232  Identities=15%  Similarity=0.102  Sum_probs=149.1

Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 048269           73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKT  152 (465)
Q Consensus        73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~  152 (465)
                      |+..|..++.+..+.|.+++-++.+... +.....+.+=+.|+-+|++.++..+.++++       -.||..-...+.+-
T Consensus        82 Dps~y~eVi~~A~~~~~~edLv~yL~Ma-Rk~~ke~~IDteLi~ayAk~~rL~elEefl-------~~~N~A~iq~VGDr  153 (624)
T 3lvg_A           82 DPSSYMEVVQAANTSGNWEELVKYLQMA-RKKARESYVETELIFALAKTNRLAELEEFI-------NGPNNAHIQQVGDR  153 (624)
T ss_dssp             CCCSSSHHHHHTTTSSCCTTHHHHHHTT-STTCCSTTTTHHHHHHHHTSCSSSTTTSTT-------SCCSSSCTHHHHHH
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHH-HHHhcccccHHHHHHHHHhhCcHHHHHHHH-------cCCCcccHHHHHHH
Confidence            7788999999999999999999988644 444444555678999999999987654443       24777777889999


Q ss_pred             HHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 048269          153 LCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAM  232 (465)
Q Consensus       153 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~  232 (465)
                      |...|.++.|.-+|..+.        -|.-|...+.+.|++..|.+.-++   .   -+..||-.+..+|...+++..|.
T Consensus       154 cf~e~lYeAAKilys~is--------N~akLAstLV~L~~yq~AVdaArK---A---ns~ktWKeV~~ACvd~~EfrLAq  219 (624)
T 3lvg_A          154 CYDEKMYDAAKLLYNNVS--------NFGRLASTLVHLGEYQAAVDGARK---A---NSTRTWKEVCFACVDGKEFRLAQ  219 (624)
T ss_dssp             HHHSCCSTTSSTTGGGSC--------CCTTTSSSSSSCSGGGSSTTTTTT---C---CSSCSHHHHTHHHHHSCTTTTTT
T ss_pred             HHHccCHHHHHHHHHhCc--------cHHHHHHHHHHHHHHHHHHHHHHh---c---CChhHHHHHHHHHhCchHHHHHH
Confidence            999999999988887765        123344445566666666543222   1   35667777777777777777665


Q ss_pred             HHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC-
Q 048269          233 KVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK-  311 (465)
Q Consensus       233 ~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-  311 (465)
                      -+--.+.-.      ......++..|-..|.+++.+.+++.-... -......|+.|.-.|++- +.++..+.++..-. 
T Consensus       220 icGLniIvh------adeL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sr  291 (624)
T 3lvg_A          220 MCGLHIVVH------ADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF-KPQKMREHLELFWSR  291 (624)
T ss_dssp             HHHHHHHCC------SSCCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSS
T ss_pred             Hhcchhccc------HHHHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHh
Confidence            554444322      223334555666777777777777665532 233566666666666654 33333333322211 


Q ss_pred             ----------CCHhhHHHHHHHHHhcCCHHHHH
Q 048269          312 ----------PDISLYHGLIKGLLRLRRAREAT  334 (465)
Q Consensus       312 ----------~~~~~~~~li~~~~~~~~~~~a~  334 (465)
                                -....|.-++-.|.+..+++.|.
T Consensus       292 iNipKviracE~ahLW~ElvfLY~~ydE~DnA~  324 (624)
T 3lvg_A          292 VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI  324 (624)
T ss_dssp             SCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred             ccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence                      33445666677777777776554

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.88  E-value=2.4  Score=39.29  Aligned_cols=90  Identities=21%  Similarity=0.195  Sum_probs=46.8

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhcC------CC----HhhH
Q 048269          253 IVIDWMCKRGKISQAYTMLEEMFKR--GIEAD---NLTLSSIIYGLLARGRLREAYKVVEEIEK------PD----ISLY  317 (465)
Q Consensus       253 ~li~~~~~~~~~~~a~~~~~~m~~~--~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~------~~----~~~~  317 (465)
                      .|...|...|++.+|.+++..+...  |....   ...+...++.|...+++..|..++.++..      ++    ...+
T Consensus       142 ~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~  221 (445)
T 4b4t_P          142 DLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYY  221 (445)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHH
Confidence            4555566666666666666655421  11111   12344445556666666666666665432      11    1234


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHH
Q 048269          318 HGLIKGLLRLRRAREATQVFREMIK  342 (465)
Q Consensus       318 ~~li~~~~~~~~~~~a~~~~~~m~~  342 (465)
                      ...+..+...+++.+|.+.|.+..+
T Consensus       222 ~~~~~~~~~e~~y~~a~~~y~e~~~  246 (445)
T 4b4t_P          222 NLLVKISLHKREYLEVAQYLQEIYQ  246 (445)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            4445555566666666666666543

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=94.70  E-value=0.91  Score=33.60  Aligned_cols=62  Identities=13%  Similarity=0.019  Sum_probs=30.2

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 048269          147 NKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGF  208 (465)
Q Consensus       147 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~  208 (465)
                      +..++.+...|.-++-.+++..+....+|++...-.+..+|.+.|+..++.+++.+..+.|+
T Consensus        95 d~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~  156 (172)
T 1wy6_A           95 NKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGE  156 (172)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence            34444444555555555555554333344455555555555555555555555555555543

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=94.43  E-value=1.1  Score=33.24  Aligned_cols=135  Identities=18%  Similarity=0.098  Sum_probs=72.9

Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHH
Q 048269          189 DVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAY  268 (465)
Q Consensus       189 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~  268 (465)
                      -.|..++..++..+..+.   .+..-||.+|--....-+-+...++++.+-.-   - |.          ..+|++....
T Consensus        19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---F-Di----------s~C~NlKrVi   81 (172)
T 1wy6_A           19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---F-DL----------DKCQNLKSVV   81 (172)
T ss_dssp             HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---S-CG----------GGCSCTHHHH
T ss_pred             HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---c-Cc----------HhhhcHHHHH
Confidence            346666666666666553   34555666665555555556555555554321   1 21          1223333333


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 048269          269 TMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK---PDISLYHGLIKGLLRLRRAREATQVFREMIKRGC  345 (465)
Q Consensus       269 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~  345 (465)
                      ..+-.+-     .+.......++.+...|+-++-.++...+..   +++...-.+..+|.+.|+..+|.+++.+.-+.|+
T Consensus        82 ~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~  156 (172)
T 1wy6_A           82 ECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGE  156 (172)
T ss_dssp             HHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence            3332221     1334444555566666666666666666432   5566666666666677777777777766666664

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=94.14  E-value=0.22  Score=42.67  Aligned_cols=62  Identities=8%  Similarity=0.002  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHh-----cCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcC-CCHHHHHHHHHHhh
Q 048269          109 KTFKIALMTLAE-----VRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQR-KLVVEAKYLILKLS  170 (465)
Q Consensus       109 ~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~m~  170 (465)
                      ..|..+...|.+     .|+.++|.+.|++..+.+..-+..++......++.. |+.+++.+.+++..
T Consensus       200 sA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL  267 (301)
T 3u64_A          200 AVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRAL  267 (301)
T ss_dssp             HHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            344445444544     255555555555555432111244444444444442 55555555555544

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=94.13  E-value=0.38  Score=35.32  Aligned_cols=79  Identities=13%  Similarity=-0.063  Sum_probs=37.1

Q ss_pred             hHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHH---HHHHHHHhhhCCCCC--CHHHHHHHHHHHHcCCCHHHHHHH
Q 048269           91 DLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKK---MVNFFHIMNDCGCEY--SLEMLNKVVKTLCQRKLVVEAKYL  165 (465)
Q Consensus        91 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~  165 (465)
                      ..+.+.|......|.++..+-..+..++++..+...   ++.+++.+.+.+ .|  .....-.+.-++.+.|++++|.++
T Consensus        18 ~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~   96 (126)
T 1nzn_A           18 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKY   96 (126)
T ss_dssp             HHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            334444444444444555555555555555554433   555555555432 12  222223334445555555555555


Q ss_pred             HHHhh
Q 048269          166 ILKLS  170 (465)
Q Consensus       166 ~~~m~  170 (465)
                      ++.+.
T Consensus        97 ~~~lL  101 (126)
T 1nzn_A           97 VRGLL  101 (126)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55554

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=93.73  E-value=0.75  Score=34.80  Aligned_cols=50  Identities=6%  Similarity=-0.040  Sum_probs=28.1

Q ss_pred             CCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048269          191 GDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVK  241 (465)
Q Consensus       191 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  241 (465)
                      +|.++|.++|+.+++.+-. =...|......-.+.|+...|.+++......
T Consensus        74 ~D~d~aR~vy~~a~~~hKk-FAKiwi~~AqFEiRqgnl~kARkILg~AiG~  123 (161)
T 4h7y_A           74 QEPDDARDYFQMARANCKK-FAFVHISFAQFELSQGNVKKSKQLLQKAVER  123 (161)
T ss_dssp             HCGGGCHHHHHHHHHHCTT-BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             cCHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHcccHHHHHHHHHHHhcc
Confidence            5666666666666543211 1555555555555666666666666666544

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.65  E-value=4.4  Score=37.51  Aligned_cols=260  Identities=8%  Similarity=0.008  Sum_probs=150.6

Q ss_pred             ChhHHHHHHHHH---hhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHH----hcCCH
Q 048269           52 SWRPVYLFFQYT---QKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLA----EVREL  124 (465)
Q Consensus        52 ~~~~a~~~f~~~---~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~  124 (465)
                      +++.|++-+...   .+.......+......++..|...|+++...+.+..+.+.......+...+++.+.    .....
T Consensus        31 ~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~~  110 (445)
T 4b4t_P           31 DCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSL  110 (445)
T ss_dssp             HHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCTT
T ss_pred             CHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCch
Confidence            455555544332   12344455678889999999999999999988887766543333333444444332    23332


Q ss_pred             HH--HHHHHHHhhh--CC-CCC---CHHHHHHHHHHHHcCCCHHHHHHHHHHhh---cCCCCC---HHhHHHHHHHHHhc
Q 048269          125 KK--MVNFFHIMND--CG-CEY---SLEMLNKVVKTLCQRKLVVEAKYLILKLS---EWIKPN---EIAYGWLIKGYCDV  190 (465)
Q Consensus       125 ~~--a~~~~~~~~~--~~-~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~---~~~~~~---~~~~~~li~~~~~~  190 (465)
                      +.  -+.+.+.+..  .| +-.   .......|...+...|++.+|..++.++.   .+....   ...+..-++.|...
T Consensus       111 d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~  190 (445)
T 4b4t_P          111 DLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILK  190 (445)
T ss_dssp             HHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHC
Confidence            22  2222222211  11 111   22334567888999999999999999987   232222   35677788999999


Q ss_pred             CCHHHHHHHHHHHHH----CCCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHH----HHHHHHh
Q 048269          191 GDLIEASKIWNLMTD----EGFEPS--IDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRI----VIDWMCK  260 (465)
Q Consensus       191 g~~~~a~~~~~~m~~----~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~----li~~~~~  260 (465)
                      +|+..|..++.....    ....|+  ...+...+..+...+++.+|.+.|.+.........+...+..    ++.+..-
T Consensus       191 ~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iL  270 (445)
T 4b4t_P          191 GDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVL  270 (445)
T ss_dssp             TCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHh
Confidence            999999999988743    222232  245677788888899999998888777542111102222222    2222222


Q ss_pred             cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHhcC
Q 048269          261 RGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLAR--GRLREAYKVVEEIEK  311 (465)
Q Consensus       261 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~--~~~~~a~~~~~~~~~  311 (465)
                      .+..+.-..+.........-++...|..++.+|...  .+++.....|.....
T Consensus       271 a~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~  323 (445)
T 4b4t_P          271 SPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLN  323 (445)
T ss_dssp             SSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTT
T ss_pred             CCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhc
Confidence            222222223333333222234667788888888764  456777776665444

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=93.54  E-value=0.31  Score=44.41  Aligned_cols=69  Identities=6%  Similarity=-0.021  Sum_probs=37.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh------cCCCCCHHhH
Q 048269          111 FKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLS------EWIKPNEIAY  180 (465)
Q Consensus       111 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~------~~~~~~~~~~  180 (465)
                      ...++..+...|++++++..+..+.... +-+...|..+|.++.+.|+..+|++.|++..      -|+.|...+-
T Consensus       174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~  248 (388)
T 2ff4_A          174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR  248 (388)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence            3344455555566666665555555443 4455556666666666666666666655543      2555555443

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=93.43  E-value=6.5  Score=41.52  Aligned_cols=124  Identities=13%  Similarity=0.186  Sum_probs=56.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCc----chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048269          215 VDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGL----STYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSII  290 (465)
Q Consensus       215 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li  290 (465)
                      |..++..+-+.+.++.+.++-....+..... +.    ..|..+.+++...|++++|...+-.+.....+  ......|+
T Consensus       902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~-~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~LV  978 (1139)
T 4fhn_B          902 YLHLSKKLFEESAYIDALEFSLLADASKETD-DEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDFV  978 (1139)
T ss_dssp             HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSC-CHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhccCC-ChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHHH
Confidence            4455555555555555555544443321111 11    13455555555556666655555554443222  23344444


Q ss_pred             HHHHhcCC------------HHHHHHHHHHhcC------CCHhhHHHHHHHHHhcCCHHHHHH-HHHHHH
Q 048269          291 YGLLARGR------------LREAYKVVEEIEK------PDISLYHGLIKGLLRLRRAREATQ-VFREMI  341 (465)
Q Consensus       291 ~~~~~~~~------------~~~a~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~-~~~~m~  341 (465)
                      ...+..|.            .++..+++..-.+      ..+.-|..|-..+...|++.+|-. +|+.+.
T Consensus       979 ~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~ 1048 (1139)
T 4fhn_B          979 NQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLS 1048 (1139)
T ss_dssp             HHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred             HHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHH
Confidence            44444433            3333333322111      112235555555667777766554 444443

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=93.08  E-value=1.3  Score=32.54  Aligned_cols=82  Identities=15%  Similarity=0.022  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHH---HHHHHHHhhcCCCC--CHHhHHHHHHHHHhcCCHHHHHH
Q 048269          124 LKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVE---AKYLILKLSEWIKP--NEIAYGWLIKGYCDVGDLIEASK  198 (465)
Q Consensus       124 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~---a~~~~~~m~~~~~~--~~~~~~~li~~~~~~g~~~~a~~  198 (465)
                      ...+.+-|......| .++..+--.+..+++++.....   ++.+++++.....|  .....-.|.-++.+.|++++|.+
T Consensus        17 l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~   95 (126)
T 1nzn_A           17 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK   95 (126)
T ss_dssp             HHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence            334444444444434 2555555555556666554433   66666665532212  22222334445555555555555


Q ss_pred             HHHHHHHC
Q 048269          199 IWNLMTDE  206 (465)
Q Consensus       199 ~~~~m~~~  206 (465)
                      .++.+.+.
T Consensus        96 ~~~~lL~~  103 (126)
T 1nzn_A           96 YVRGLLQT  103 (126)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            55555553

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=91.34  E-value=3.7  Score=31.08  Aligned_cols=34  Identities=6%  Similarity=-0.085  Sum_probs=22.4

Q ss_pred             CHHhHHHHHHHHHhcCCh------hHHHHHHHHHhhCCCC
Q 048269           73 NSITFNRMVDIIGKSRNI------DLFWETLQEMGRRRLV  106 (465)
Q Consensus        73 ~~~~~~~l~~~~~~~g~~------~~a~~~~~~~~~~~~~  106 (465)
                      |..+|-..+...-+.|++      ++..++|++....-+|
T Consensus        12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp   51 (161)
T 4h7y_A           12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPP   51 (161)
T ss_dssp             SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCG
T ss_pred             CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCc
Confidence            667777777777766777      6666777766654333

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=91.24  E-value=1.7  Score=39.58  Aligned_cols=77  Identities=6%  Similarity=0.028  Sum_probs=63.9

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhccchHHHHHHHHHHHH-----cCCCCchhHHHHHHH
Q 048269          376 TIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNEEGVVMFEEVGKKLRE-----VGLADLADIFQRYGK  450 (465)
Q Consensus       376 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~g~~~~~~~~~~~~~  450 (465)
                      ..++..+...|++++|+..++.+... -..+...|..++.++.+.|+..+|++.++++.+     .|+.|...+-+.+.+
T Consensus       175 ~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~~  253 (388)
T 2ff4_A          175 TAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNER  253 (388)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence            34567778999999999999999874 234777999999999999999999999998875     499998888887776


Q ss_pred             HHh
Q 048269          451 KMA  453 (465)
Q Consensus       451 ~~~  453 (465)
                      ++.
T Consensus       254 il~  256 (388)
T 2ff4_A          254 ILR  256 (388)
T ss_dssp             HHT
T ss_pred             HHc
Confidence            554

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=90.46  E-value=1.2  Score=44.05  Aligned_cols=127  Identities=14%  Similarity=0.084  Sum_probs=79.0

Q ss_pred             HHHHHHHHHhcCC-hhHHHHHHHHHhhCCCCChHHHH-HHHHHHHhcC-CHHHHHHHHHHhhhC------CCCC-CHH--
Q 048269           77 FNRMVDIIGKSRN-IDLFWETLQEMGRRRLVNDKTFK-IALMTLAEVR-ELKKMVNFFHIMNDC------GCEY-SLE--  144 (465)
Q Consensus        77 ~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~-~~~~a~~~~~~~~~~------~~~~-~~~--  144 (465)
                      -..++..+...|+ ++.|..+|+++...++.....+. .++..+.+.+ +--+|.+++.+..+.      ..++ +..  
T Consensus       251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~  330 (754)
T 4gns_B          251 MYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA  330 (754)
T ss_dssp             HHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred             HHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence            4556666666666 57899999999887663332222 2333332222 223445555444321      1111 111  


Q ss_pred             --------HHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 048269          145 --------MLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLM  203 (465)
Q Consensus       145 --------~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  203 (465)
                              ..+.=...|...|+++.|+++-++...-.+-+-.+|..|..+|...|+++.|+-.++-+
T Consensus       331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence                    11222344566889999999999888555777889999999999999999999888776

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=90.31  E-value=1.2  Score=30.89  Aligned_cols=47  Identities=13%  Similarity=0.172  Sum_probs=27.5

Q ss_pred             hhHHHHHHHHHhhCCC-CChHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048269           90 IDLFWETLQEMGRRRL-VNDKTFKIALMTLAEVRELKKMVNFFHIMND  136 (465)
Q Consensus        90 ~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  136 (465)
                      .-+..+-++.+...+. |++.+..+.+++|.+.+++..|+++|+.++.
T Consensus        26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~   73 (109)
T 1v54_E           26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD   73 (109)
T ss_dssp             HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            3345555555555554 5566666666666666666666666665554

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=90.30  E-value=1.8  Score=42.83  Aligned_cols=69  Identities=9%  Similarity=-0.071  Sum_probs=56.2

Q ss_pred             CCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhcc---------chHHHHHHHHHHHH
Q 048269          365 RKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNEE---------GVVMFEEVGKKLRE  435 (465)
Q Consensus       365 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g---------~~~~a~~~~~~~~~  435 (465)
                      ....+-+..-|..|.....+.+.+++|.+.|+.....  +-+...+..|++.|.+.+         +.+.++..+=++..
T Consensus       606 ~~~~kks~lEWEiLGlla~RL~h~~EA~~a~~~~l~~--RFs~ka~~kLLeiY~~~~~~~~~~~~~d~~~il~~~ikl~~  683 (754)
T 4gns_B          606 NKDEKHSGLEWELLGLIMLRTWHWEDAVACLRTSIVA--RFDPVSCQQLLKIYLQPPKNIQEVTLLDTDTIISLLIKKIS  683 (754)
T ss_dssp             SSSCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHSS--SCCHHHHHHHHHHHHSCCSSSCSCCSSCHHHHHHHHHHHHH
T ss_pred             HhhcccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCHHHHHHHHHHHHhcCccccccccCCHHHHHHHHHHHHH
Confidence            3444557778999999999999999999999999974  568899999999998876         67777666666653

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=88.91  E-value=2.2  Score=36.39  Aligned_cols=252  Identities=9%  Similarity=0.028  Sum_probs=116.3

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHH--HHHHHHHHHcC
Q 048269           79 RMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEM--LNKVVKTLCQR  156 (465)
Q Consensus        79 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~  156 (465)
                      ..+...++.|+.+....+++.-...+..+...-...+...+..|+.+-+.    .+.+.|..++...  -.+.+...+..
T Consensus         7 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~----~Ll~~g~~~~~~~~~g~t~L~~A~~~   82 (285)
T 1wdy_A            7 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVE----LLLRHGADPVLRKKNGATPFLLAAIA   82 (285)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHH----HHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHH----HHHHcCCCCcccCCCCCCHHHHHHHc
Confidence            45556677777766555554322211111111123344455667765433    3344454433211  11233444556


Q ss_pred             CCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHH------------HHHHHHHHHh
Q 048269          157 KLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDV------------VDKMIETFFK  224 (465)
Q Consensus       157 ~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~------------~~~li~~~~~  224 (465)
                      |+.+-+..+++.-..-...+...++. +...+..|+.+    +++.+.+.|..++...            -...+...+.
T Consensus        83 ~~~~~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~  157 (285)
T 1wdy_A           83 GSVKLLKLFLSKGADVNECDFYGFTA-FMEAAVYGKVK----ALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAE  157 (285)
T ss_dssp             TCHHHHHHHHHTTCCTTCBCTTCCBH-HHHHHHTTCHH----HHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCCCccCcccCCH-HHHHHHhCCHH----HHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHH
Confidence            66665555444311111112222223 33445566654    4445555554443210            0123444556


Q ss_pred             cCCHHHHHHHHHHHHHcCCCC--CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCCHH
Q 048269          225 INKDDEAMKVFQMMRVKRMDD--LGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLT--LSSIIYGLLARGRLR  300 (465)
Q Consensus       225 ~g~~~~A~~~~~~m~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~li~~~~~~~~~~  300 (465)
                      .|+.+-+..+++.   .|..+  .+....+.+.. .+..++.....++++.+.+.|..++...  -.+.+...+..|+.+
T Consensus       158 ~~~~~~v~~Ll~~---~~~~~~~~~~~g~t~l~~-a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~  233 (285)
T 1wdy_A          158 KGHVEVLKILLDE---MGADVNACDNMGRNALIH-ALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLG  233 (285)
T ss_dssp             HTCHHHHHHHHHT---SCCCTTCCCTTSCCHHHH-HHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHH
T ss_pred             cCCHHHHHHHHHh---cCCCCCccCCCCCCHHHH-HHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHH
Confidence            6776655544432   13333  12223334433 3455665556677777777776554321  123344556678888


Q ss_pred             HHHHHHHHhc-C---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 048269          301 EAYKVVEEIE-K---PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPT  348 (465)
Q Consensus       301 ~a~~~~~~~~-~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~  348 (465)
                      -+..+++... .   .|..-.+.+- ..++.|+.+    +.+.+.+.|..|+
T Consensus       234 ~v~~Ll~~~g~~~~~~~~~g~t~l~-~A~~~~~~~----i~~~Ll~~Ga~~~  280 (285)
T 1wdy_A          234 LVQRLLEQEHIEINDTDSDGKTALL-LAVELKLKK----IAELLCKRGASTD  280 (285)
T ss_dssp             HHHHHHHSSSCCTTCCCTTSCCHHH-HHHHTTCHH----HHHHHHHHSSCSC
T ss_pred             HHHHHHhccCCCccccCCCCCcHHH-HHHHcCcHH----HHHHHHHcCCCCC
Confidence            7777777322 1   2332233332 333445543    3444455576665

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=87.67  E-value=26  Score=35.65  Aligned_cols=148  Identities=11%  Similarity=0.146  Sum_probs=65.3

Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCCcHHHHH--HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHH---HHHHHHHhc
Q 048269          187 YCDVGDLIEASKIWNLMTDEGFEPSIDVVD--KMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYR---IVIDWMCKR  261 (465)
Q Consensus       187 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~---~li~~~~~~  261 (465)
                      +.-.|+-+-...++..+.+.   .+..+..  .+.-++...|+.+.+..+++.+.... .|  ..-|.   ++.-+|+..
T Consensus       500 ~vGTgn~~ai~~LL~~~~e~---~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp--~vRygaa~alglAyaGT  573 (963)
T 4ady_A          500 MLGTGKPEAIHDMFTYSQET---QHGNITRGLAVGLALINYGRQELADDLITKMLASD-ES--LLRYGGAFTIALAYAGT  573 (963)
T ss_dssp             HTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CH--HHHHHHHHHHHHHTTTS
T ss_pred             hcccCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CH--HHHHHHHHHHHHHhcCC
Confidence            44556666566666655543   1222222  22223335566666666666655431 11  11122   223345566


Q ss_pred             CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC-CCHhhH--HHHHHHHHhcCCH-HHHHHHH
Q 048269          262 GKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK-PDISLY--HGLIKGLLRLRRA-REATQVF  337 (465)
Q Consensus       262 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~~~~~--~~li~~~~~~~~~-~~a~~~~  337 (465)
                      |+.....+++..+.... ..+......+.-++...|+.+.+.++++.+.+ .|..+-  .++..+....|.. .++++++
T Consensus       574 Gn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L  652 (963)
T 4ady_A          574 GNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVL  652 (963)
T ss_dssp             CCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHH
T ss_pred             CCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHH
Confidence            66655555666665541 11222222222233334555555555554443 333222  2222233333332 4566666


Q ss_pred             HHHH
Q 048269          338 REMI  341 (465)
Q Consensus       338 ~~m~  341 (465)
                      ..+.
T Consensus       653 ~~L~  656 (963)
T 4ady_A          653 DPLT  656 (963)
T ss_dssp             HHHH
T ss_pred             HHHc
Confidence            6664

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=87.64  E-value=5.4  Score=27.71  Aligned_cols=70  Identities=6%  Similarity=0.013  Sum_probs=53.6

Q ss_pred             HHhcC-CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhccchHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 048269          382 LVKAG-KSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNEEGVVMFEEVGKKLREVGLADLADIFQRYGKKM  452 (465)
Q Consensus       382 ~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~~~~~~  452 (465)
                      |-+.. +.=+..+-++.+....+.|++.+..+.+++|.+.+++..|..+++.++.+--.. ..+|..+-+-+
T Consensus        19 F~~~~iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~-~~iY~~~lqEl   89 (109)
T 1v54_E           19 FNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH-KEIYPYVIQEL   89 (109)
T ss_dssp             HTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC-TTHHHHHHHHH
T ss_pred             cCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc-hhhHHHHHHHH
Confidence            33444 555677778888878889999999999999999999999999999988774222 56777766533

>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}

Probab=86.66  E-value=11  Score=30.17  Aligned_cols=70  Identities=9%  Similarity=0.068  Sum_probs=60.7

Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCHh-hHHHHHHHHhhccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHhH
Q 048269          385 AGKSLDAAKYVERVMNRGVEVPRF-DYNKFLHYYSNEEGVVMFEEVGKKLREVGLADLADIFQRYGKKMAT  454 (465)
Q Consensus       385 ~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~~~~~~~~  454 (465)
                      .+...++.++|..|...|+.-... .|......+...|++++|.++++.-++.+-.|...+-..+.....+
T Consensus        92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~rL~~~~~~F~~R  162 (202)
T 3esl_A           92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYNRLLRSLSNYEDR  162 (202)
T ss_dssp             TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHHHHHHHH
T ss_pred             ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHH
Confidence            555789999999999998876544 7888888889999999999999999999999999999888876554

>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A

Probab=86.18  E-value=9.4  Score=28.99  Aligned_cols=99  Identities=13%  Similarity=0.004  Sum_probs=69.7

Q ss_pred             HHHHHHHhhcccC-CCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh-hHHHHHHHHhhccchHHHHHH
Q 048269          352 YIMLLQGHLGKRG-RKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRF-DYNKFLHYYSNEEGVVMFEEV  429 (465)
Q Consensus       352 ~~~ll~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~  429 (465)
                      ...++.-|...-. ....+.|+.....-+..--.   .+++.++|..|...|+.-... .|......+...|++++|.++
T Consensus        47 l~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~---~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~V  123 (152)
T 4a1g_A           47 LITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEY---NSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAV  123 (152)
T ss_dssp             HHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTT---BSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHhcccccccCCHHHHHHHHHHHHh---cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            4444444433332 34444454433333332222   244899999999998876544 788888888999999999999


Q ss_pred             HHHHHHcCCCCchhHHHHHHHHHh
Q 048269          430 GKKLREVGLADLADIFQRYGKKMA  453 (465)
Q Consensus       430 ~~~~~~~g~~~~~~~~~~~~~~~~  453 (465)
                      ++.-++.+-.|...+-..+.....
T Consensus       124 y~~Gi~~~A~P~~rL~~~~~~F~~  147 (152)
T 4a1g_A          124 LQRGIQNQAEPREFLQQQYRLFQT  147 (152)
T ss_dssp             HHHHHHTTCBSHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCccHHHHHHHHHHHHH
Confidence            999999999999999988887654

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=85.93  E-value=8.9  Score=29.56  Aligned_cols=111  Identities=8%  Similarity=0.044  Sum_probs=50.9

Q ss_pred             HHHHHhcCCHHHHHHHHHHhcC-----CCH-------hhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHH
Q 048269          290 IYGLLARGRLREAYKVVEEIEK-----PDI-------SLYHGLIKGLLRLRRAREATQVFREMIKR-GCEPTMHTYIMLL  356 (465)
Q Consensus       290 i~~~~~~~~~~~a~~~~~~~~~-----~~~-------~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~ll  356 (465)
                      +..+...|.++.|+-+.+.+..     ++.       .++..+..++...+++.+|...|++.+.. ..-+...+....+
T Consensus        27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~  106 (167)
T 3ffl_A           27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPST  106 (167)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----------
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccc
Confidence            3444555555555554444332     221       13444556666777777777777775432 1111111100000


Q ss_pred             HHhhcccCCCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048269          357 QGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMN  400 (465)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  400 (465)
                      ..-....+......+...---+..+|.+.|++++|+.+++.+..
T Consensus       107 ~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~  150 (167)
T 3ffl_A          107 GNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS  150 (167)
T ss_dssp             ----------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred             cccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence            00000000111222333333466778899999999999876543

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=85.62  E-value=3.1  Score=30.68  Aligned_cols=45  Identities=13%  Similarity=0.223  Sum_probs=24.2

Q ss_pred             HHHHHHHHHhhCCC-CChHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048269           92 LFWETLQEMGRRRL-VNDKTFKIALMTLAEVRELKKMVNFFHIMND  136 (465)
Q Consensus        92 ~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  136 (465)
                      +..+-++.+...+. |++.+..+.+++|-+.+++..|+++|+-++.
T Consensus        71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~  116 (152)
T 2y69_E           71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD  116 (152)
T ss_dssp             HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            44444445444444 5555555555555555555555555555544

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=85.59  E-value=18  Score=31.70  Aligned_cols=131  Identities=13%  Similarity=0.039  Sum_probs=75.4

Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHH----HHhhhCCCCCCHHHHHHHH
Q 048269           75 ITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFF----HIMNDCGCEYSLEMLNKVV  150 (465)
Q Consensus        75 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~~~~~~~~~~~~~~~~ll  150 (465)
                      .+|.++..-|.+.+++++|++++..-              ...+.+.|+...|-++-    +...+.++++|......++
T Consensus        36 Q~~RTi~~Ry~~~k~y~eAidLL~~G--------------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~  101 (336)
T 3lpz_A           36 QETRLVAARYSKQGNWAAAVDILASV--------------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL  101 (336)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcCHHHHHHHHHHH--------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            34566667777788888888776543              23344555555444433    4455567778887777777


Q ss_pred             HHHHcCCCHH-HHHHHHHHhh-------cCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHH
Q 048269          151 KTLCQRKLVV-EAKYLILKLS-------EWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETF  222 (465)
Q Consensus       151 ~~~~~~~~~~-~a~~~~~~m~-------~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~  222 (465)
                      ..+.....-+ .=..+.+++.       ....-|+.....+...|.+.+++.+|...|-    .|-.++...|..++--+
T Consensus       102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew  177 (336)
T 3lpz_A          102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEW  177 (336)
T ss_dssp             HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHH
T ss_pred             HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHH
Confidence            7776654321 1122333322       1234466677777788888888888777662    23334445554444433


Q ss_pred             H
Q 048269          223 F  223 (465)
Q Consensus       223 ~  223 (465)
                      .
T Consensus       178 ~  178 (336)
T 3lpz_A          178 Y  178 (336)
T ss_dssp             H
T ss_pred             H
Confidence            3

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=85.51  E-value=34  Score=34.84  Aligned_cols=212  Identities=10%  Similarity=0.044  Sum_probs=120.0

Q ss_pred             HHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHH--HHHHHHHHhcC
Q 048269          149 VVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVV--DKMIETFFKIN  226 (465)
Q Consensus       149 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~--~~li~~~~~~g  226 (465)
                      +...+...|+-+....++..+......+..-...+.-++...|+.+.+..+.+.+.... .|....-  .++.-+|+..|
T Consensus       496 LGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTG  574 (963)
T 4ady_A          496 MGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTG  574 (963)
T ss_dssp             HHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSC
T ss_pred             HhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCC
Confidence            33445566777777777776653222222333333444557799999999998887641 2322222  23445678889


Q ss_pred             CHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHH
Q 048269          227 KDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRL-REAYKV  305 (465)
Q Consensus       227 ~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~-~~a~~~  305 (465)
                      +.....+++..+.... .. ++.-...+.-++...|+.+.+.++++.+.+.+ .|....-..+.-+....|.. .++..+
T Consensus       575 n~~aIq~LL~~~~~d~-~d-~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~  651 (963)
T 4ady_A          575 NNSAVKRLLHVAVSDS-ND-DVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDV  651 (963)
T ss_dssp             CHHHHHHHHHHHHHCS-CH-HHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHH
T ss_pred             CHHHHHHHHHHhccCC-cH-HHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHH
Confidence            9888888998888652 11 33333333334555778777888887766654 34444444444455555543 577788


Q ss_pred             HHHhcC-CCHhhHHHHHHHHH--hcC-------CHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHhhcccC
Q 048269          306 VEEIEK-PDISLYHGLIKGLL--RLR-------RAREATQVFREMIKR-GCEPTMHTYIMLLQGHLGKRG  364 (465)
Q Consensus       306 ~~~~~~-~~~~~~~~li~~~~--~~~-------~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~~~  364 (465)
                      +..+.. +|..+-..-+.++.  -.|       +....++.+...... .-.++......+-++....++
T Consensus       652 L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~  721 (963)
T 4ady_A          652 LDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGG  721 (963)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGG
T ss_pred             HHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcCC
Confidence            888876 66665544444433  333       233334444444332 223445555556666665555

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=85.41  E-value=5.6  Score=30.66  Aligned_cols=117  Identities=10%  Similarity=0.041  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCCCH-------HHHHHHHHHHHcCCCHHHHHHHHHHhh---cCCCCCHH
Q 048269          110 TFKIALMTLAEVRELKKMVNFFHIMNDCG-CEYSL-------EMLNKVVKTLCQRKLVVEAKYLILKLS---EWIKPNEI  178 (465)
Q Consensus       110 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~m~---~~~~~~~~  178 (465)
                      ++..-++.+...+.++.|+-+.+.+.... ..|+.       .++..+.+++...|++..|...|++..   ..+.-+..
T Consensus        22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s  101 (167)
T 3ffl_A           22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK  101 (167)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            34455666777777777777766654421 12221       234455666777777777777777753   22211111


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048269          179 AYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMR  239 (465)
Q Consensus       179 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  239 (465)
                      ++..+-    .......         ......+...--.+..+|.+.+++++|+.+++.+.
T Consensus       102 ~~~~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip  149 (167)
T 3ffl_A          102 VRPSTG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP  149 (167)
T ss_dssp             ----------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred             cccccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence            111110    0000000         00112344454557777888888888888876543

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=85.26  E-value=21  Score=32.22  Aligned_cols=130  Identities=9%  Similarity=-0.069  Sum_probs=65.7

Q ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHhh--cCCCC---CHHhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCcHHHH--
Q 048269          144 EMLNKVVKTLCQRKLVVEAKYLILKLS--EWIKP---NEIAYGWLIKGYCDVG-DLIEASKIWNLMTDEGFEPSIDVV--  215 (465)
Q Consensus       144 ~~~~~ll~~~~~~~~~~~a~~~~~~m~--~~~~~---~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~--  215 (465)
                      .....|...|.+.|+.++..+++....  -+.-+   .......++..+.... ..+.-.++..+..+..- -+..+|  
T Consensus        20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~r~flr   98 (394)
T 3txn_A           20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK-QEKRTFLR   98 (394)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-HTTCHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            345567777777888888777777765  11111   2233456666665542 23333333333322100 011112  


Q ss_pred             ----HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCc-----chHHHHHHHHHhcCChHHHHHHHHHHH
Q 048269          216 ----DKMIETFFKINKDDEAMKVFQMMRVKRMDDLGL-----STYRIVIDWMCKRGKISQAYTMLEEMF  275 (465)
Q Consensus       216 ----~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-----~~~~~li~~~~~~~~~~~a~~~~~~m~  275 (465)
                          ..++..|...|++.+|.+++..+.+.--.. |.     ..|..-+..|...+++.++...+....
T Consensus        99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~-dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~  166 (394)
T 3txn_A           99 QSLEARLIALYFDTALYTEALALGAQLLRELKKL-DDKNLLVEVQLLESKTYHALSNLPKARAALTSAR  166 (394)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS-SCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence                245666666677777766666665532221 21     123444455556666666666665554

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=84.92  E-value=9.8  Score=32.07  Aligned_cols=56  Identities=7%  Similarity=-0.115  Sum_probs=42.4

Q ss_pred             HHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 048269           82 DIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDC  137 (465)
Q Consensus        82 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  137 (465)
                      ..+.+.|++++++.....-.+..+.+...-..++..+|-.|++++|..-++...+.
T Consensus         5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l   60 (273)
T 1zbp_A            5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL   60 (273)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence            34567778888888887777777777777777788888888888887777777664

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=84.90  E-value=19  Score=31.50  Aligned_cols=111  Identities=13%  Similarity=0.091  Sum_probs=50.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHH----HHHHHHcCCCCCCcchHHHHH
Q 048269          180 YGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKV----FQMMRVKRMDDLGLSTYRIVI  255 (465)
Q Consensus       180 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~~~~~~~~~~~~~li  255 (465)
                      |.++..-|.+.+++++|++++..-.               ..+.+.|+...|.++    ++-+.+.++++ +......++
T Consensus        38 ~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~-~~~~~~rL~  101 (336)
T 3lpz_A           38 TRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRV-DGASRGKLL  101 (336)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCC-CHHHHHHHH
T ss_pred             HHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCC-CHHHHHHHH
Confidence            3344445666666666665543321               223444554443333    34444455555 555555555


Q ss_pred             HHHHhcCChH-HHHHHHHHHH----HCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048269          256 DWMCKRGKIS-QAYTMLEEMF----KRG--IEADNLTLSSIIYGLLARGRLREAYKVV  306 (465)
Q Consensus       256 ~~~~~~~~~~-~a~~~~~~m~----~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~  306 (465)
                      ..+.....-+ .-.++.+++.    +.|  ..-|+.....+...|.+.+++.+|...|
T Consensus       102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~  159 (336)
T 3lpz_A          102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL  159 (336)
T ss_dssp             HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence            5555443211 1122222222    112  1224444445555555555555555544

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=84.36  E-value=8.3  Score=28.45  Aligned_cols=22  Identities=14%  Similarity=-0.117  Sum_probs=9.8

Q ss_pred             HHHHHHcCCCHHHHHHHHHHhh
Q 048269          149 VVKTLCQRKLVVEAKYLILKLS  170 (465)
Q Consensus       149 ll~~~~~~~~~~~a~~~~~~m~  170 (465)
                      +.-++.+.|++++|.++.+.+.
T Consensus        84 LAvg~yklgdY~~Ar~y~d~lL  105 (134)
T 3o48_A           84 LTIGCYKLGEYSMAKRYVDTLF  105 (134)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHHHHHH
Confidence            3334444444444444444443

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=83.80  E-value=47  Score=35.05  Aligned_cols=148  Identities=9%  Similarity=-0.020  Sum_probs=95.0

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC-------------------
Q 048269          251 YRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK-------------------  311 (465)
Q Consensus       251 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-------------------  311 (465)
                      ...++..+...+..+.+.++....     +.++...-.+..+|...|++++|...|.+...                   
T Consensus       815 ~~~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~  889 (1139)
T 4fhn_B          815 VTELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIA  889 (1139)
T ss_dssp             HHHHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccc
Confidence            344566677777777766654432     22444444566778899999999999987643                   


Q ss_pred             -------CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHh
Q 048269          312 -------PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVK  384 (465)
Q Consensus       312 -------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~  384 (465)
                             .-..-|..++..+.+.+.++.+.++-+..++..-.-+. ...                  ...|..++.+...
T Consensus       890 ~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~-~~~------------------~~l~~~iFk~~L~  950 (1139)
T 4fhn_B          890 EKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDE-DLS------------------IAITHETLKTACA  950 (1139)
T ss_dssp             HTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCH-HHH------------------HHHHHHHHHHHHH
T ss_pred             ccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCCh-hhH------------------HHHHHHHHHHHHh
Confidence                   01123566777777888888888777766654211111 110                  1135666777799


Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhccchH
Q 048269          385 AGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNEEGVV  424 (465)
Q Consensus       385 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~  424 (465)
                      .|++++|...+-.+.+...  -...+..|+..++..|..+
T Consensus       951 l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV~~lce~~~~~  988 (1139)
T 4fhn_B          951 AGKFDAAHVALMVLSTTPL--KKSCLLDFVNQLTKQGKIN  988 (1139)
T ss_dssp             HCCSGGGGHHHHHHHHSSS--CHHHHHHHHHHHHHHCCHH
T ss_pred             hCCHHHHHHHHHhCCCHHH--HHHHHHHHHHHHHhCCChh
Confidence            9999999999988876443  3456777777777655443

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=83.70  E-value=8.9  Score=28.29  Aligned_cols=72  Identities=8%  Similarity=-0.040  Sum_probs=56.6

Q ss_pred             CCCCCHHhHHHHHHHHHhcCCh---hHHHHHHHHHhhCCC-CChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC
Q 048269           69 CFAHNSITFNRMVDIIGKSRNI---DLFWETLQEMGRRRL-VNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYS  142 (465)
Q Consensus        69 ~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  142 (465)
                      +-.|++.+--.+..++.+..+.   .+++.+++.+.+.++ .....+-.+.-++.+.|++++|.+..+.+.+.  .|+
T Consensus        35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~--eP~  110 (134)
T 3o48_A           35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERN  110 (134)
T ss_dssp             GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CTT
T ss_pred             CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--CCC
Confidence            4457788877788888888765   468899998887765 23556777888999999999999999999985  454

>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A

Probab=83.12  E-value=6.5  Score=28.99  Aligned_cols=78  Identities=9%  Similarity=0.134  Sum_probs=56.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhc--cchHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 048269          375 DTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNE--EGVVMFEEVGKKLREVGLADLADIFQRYGKKM  452 (465)
Q Consensus       375 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~g~~~~~~~~~~~~~~~  452 (465)
                      .+.++.-|...|+.++|.+.++++....+ -...+...+..++-+.  ...+.+..++..+.+.|+.....+...+.++.
T Consensus        10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~~Gf~~v~   88 (129)
T 2nsz_A           10 IDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIY   88 (129)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHH
Confidence            45677888999999999999999852111 1223445555566654  34678999999999999998888888777654


Q ss_pred             h
Q 048269          453 A  453 (465)
Q Consensus       453 ~  453 (465)
                      .
T Consensus        89 ~   89 (129)
T 2nsz_A           89 N   89 (129)
T ss_dssp             H
T ss_pred             h
Confidence            4

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=83.10  E-value=5.9  Score=36.48  Aligned_cols=95  Identities=13%  Similarity=0.078  Sum_probs=56.0

Q ss_pred             chHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC-----CCHhhHHHH-
Q 048269          249 STYRIVIDWMCKRGKISQAYTMLEEMFKRGI--EADNLTLSSIIYGLLARGRLREAYKVVEEIEK-----PDISLYHGL-  320 (465)
Q Consensus       249 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~l-  320 (465)
                      .+...+...|.+.|+++.|.+.|.++.....  ..-...+-.+++.+...+++..+...+.++..     ++....+.+ 
T Consensus       132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk  211 (429)
T 4b4t_R          132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK  211 (429)
T ss_dssp             SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence            3677788888888888888888888776422  22234555666667777777777766666543     232222221 


Q ss_pred             ---HHHHHhcCCHHHHHHHHHHHHHc
Q 048269          321 ---IKGLLRLRRAREATQVFREMIKR  343 (465)
Q Consensus       321 ---i~~~~~~~~~~~a~~~~~~m~~~  343 (465)
                         ...+...+++..|.+.|-+....
T Consensus       212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t  237 (429)
T 4b4t_R          212 TYYGIHCLAVRNFKEAAKLLVDSLAT  237 (429)
T ss_dssp             HHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhChHHHHHHHHHHHhcc
Confidence               11223345666666666555443

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=82.91  E-value=12  Score=27.60  Aligned_cols=70  Identities=6%  Similarity=0.013  Sum_probs=52.3

Q ss_pred             HHhcC-CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhccchHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 048269          382 LVKAG-KSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNEEGVVMFEEVGKKLREVGLADLADIFQRYGKKM  452 (465)
Q Consensus       382 ~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~~~~~~  452 (465)
                      |-+.. |.-+..+-++.+...++.|++.+....+++|.+.+++..|..+++-++.+--.. ..+|..+-+-+
T Consensus        62 F~~~~iD~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~-~~iY~y~lqEl  132 (152)
T 2y69_E           62 FNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH-KEIYPYVIQEL  132 (152)
T ss_dssp             HTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC-TTHHHHHHHHH
T ss_pred             cCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCc-hhhHHHHHHHH
Confidence            33444 455666777777777888999999999999999999999999999888774222 66777766533

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=82.79  E-value=13  Score=27.83  Aligned_cols=67  Identities=7%  Similarity=-0.010  Sum_probs=42.1

Q ss_pred             CCCHHhHHHHHHHHHhcCChh---HHHHHHHHHhhCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 048269           71 AHNSITFNRMVDIIGKSRNID---LFWETLQEMGRRRLV-NDKTFKIALMTLAEVRELKKMVNFFHIMNDC  137 (465)
Q Consensus        71 ~~~~~~~~~l~~~~~~~g~~~---~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  137 (465)
                      .|+..+--.+..++.+..+.+   +++.+++.+.+.++. .....-.+.-++.+.|++++|.+..+.+.+.
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~  106 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  106 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            466666666666676665443   566677776665442 2334445566677777777777777777664

>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A

Probab=81.67  E-value=16  Score=28.14  Aligned_cols=67  Identities=12%  Similarity=0.058  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHhCCCCCCHh-hHHHHHHHHhhccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHhHH
Q 048269          389 LDAAKYVERVMNRGVEVPRF-DYNKFLHYYSNEEGVVMFEEVGKKLREVGLADLADIFQRYGKKMATR  455 (465)
Q Consensus       389 ~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  455 (465)
                      +.+.++|..|...|+.-... .|......+...|++.+|.++++.-++.+-.|...+-.++......-
T Consensus        77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L~~~~~~F~~R~  144 (164)
T 2wvi_A           77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERLQSQHRQFQARV  144 (164)
T ss_dssp             SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence            44788999999998876544 78888888888999999999999999999999999988888655443

>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}

Probab=81.46  E-value=11  Score=26.07  Aligned_cols=88  Identities=16%  Similarity=0.178  Sum_probs=60.1

Q ss_pred             CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048269          262 GKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEKPDISLYHGLIKGLLRLRRAREATQVFREMI  341 (465)
Q Consensus       262 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  341 (465)
                      ...++|..+-+.+...+.  ...+--+-+..+.+.|++++|..+.+...-||...|-+|-.  .+.|..+++..-+.++.
T Consensus        20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la   95 (115)
T 2uwj_G           20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG   95 (115)
T ss_dssp             TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence            356778777777776643  22222222346778999999999888888888888877654  36788888888887777


Q ss_pred             HcCCCCCHHHHHH
Q 048269          342 KRGCEPTMHTYIM  354 (465)
Q Consensus       342 ~~~~~p~~~~~~~  354 (465)
                      .+| .|....|..
T Consensus        96 ~sg-~p~~q~Fa~  107 (115)
T 2uwj_G           96 GSS-DPALADFAA  107 (115)
T ss_dssp             TCS-SHHHHHHHH
T ss_pred             hCC-CHHHHHHHH
Confidence            665 455555443

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=81.24  E-value=26  Score=30.36  Aligned_cols=113  Identities=7%  Similarity=0.025  Sum_probs=65.6

Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHH----HHHhhhCCCCCCHHHHHHHH
Q 048269           75 ITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNF----FHIMNDCGCEYSLEMLNKVV  150 (465)
Q Consensus        75 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~ll  150 (465)
                      ..|.++..-|.+++++++|++++..-              ...+.+.|+...|-++    .+...+.+++++......++
T Consensus        34 Q~~Rtl~~Ry~~~~~~~eAidlL~~g--------------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~   99 (312)
T 2wpv_A           34 QTLRTIANRYVRSKSYEHAIELISQG--------------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV   99 (312)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHH--------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            34555666666667777777666543              2334455665554443    44455567778877777777


Q ss_pred             HHHHcCCCHH-HHHHHHHHhh-----cC--CCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 048269          151 KTLCQRKLVV-EAKYLILKLS-----EW--IKPNEIAYGWLIKGYCDVGDLIEASKIWN  201 (465)
Q Consensus       151 ~~~~~~~~~~-~a~~~~~~m~-----~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~  201 (465)
                      ..+......+ .-.++++++.     .+  ..-++.....+...|.+.|++.+|...|-
T Consensus       100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i  158 (312)
T 2wpv_A          100 RLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM  158 (312)
T ss_dssp             HHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence            7766533211 1223333332     11  23466777777888888888887777554

>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}

Probab=80.97  E-value=11  Score=26.01  Aligned_cols=88  Identities=16%  Similarity=0.253  Sum_probs=60.0

Q ss_pred             CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048269          262 GKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEKPDISLYHGLIKGLLRLRRAREATQVFREMI  341 (465)
Q Consensus       262 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  341 (465)
                      ...++|..+-+.+...+.  ...+--+-+..+.+.|++++|..+.+...-||...|-+|-..  +.|..+++..-+.++.
T Consensus        21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la   96 (116)
T 2p58_C           21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLA   96 (116)
T ss_dssp             TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHH
Confidence            356778888777776643  222222223467789999999999888888888888777554  6677788888777776


Q ss_pred             HcCCCCCHHHHHH
Q 048269          342 KRGCEPTMHTYIM  354 (465)
Q Consensus       342 ~~~~~p~~~~~~~  354 (465)
                      .+| .|....|..
T Consensus        97 ~sg-~p~~q~Fa~  108 (116)
T 2p58_C           97 RSQ-DPRIQTFVN  108 (116)
T ss_dssp             TCC-CHHHHHHHH
T ss_pred             hCC-CHHHHHHHH
Confidence            665 455454443

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=80.64  E-value=34  Score=31.31  Aligned_cols=100  Identities=14%  Similarity=0.009  Sum_probs=59.6

Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHH-
Q 048269          178 IAYGWLIKGYCDVGDLIEASKIWNLMTDE--GFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIV-  254 (465)
Q Consensus       178 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l-  254 (465)
                      .+...+...|.+.|+++.|.+.|.++...  +..--...+-.+++.+...+++..+...+.+....-....+....+.+ 
T Consensus       132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk  211 (429)
T 4b4t_R          132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK  211 (429)
T ss_dssp             SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence            35666777777888888888888777663  222335566777777777888888877777764321111122211111 


Q ss_pred             ---HHHHHhcCChHHHHHHHHHHHHC
Q 048269          255 ---IDWMCKRGKISQAYTMLEEMFKR  277 (465)
Q Consensus       255 ---i~~~~~~~~~~~a~~~~~~m~~~  277 (465)
                         ...+...+++..|...|-+....
T Consensus       212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t  237 (429)
T 4b4t_R          212 TYYGIHCLAVRNFKEAAKLLVDSLAT  237 (429)
T ss_dssp             HHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhChHHHHHHHHHHHhcc
Confidence               11233567788877777665543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	465
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.91
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.88
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.63
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.61
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.28
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.25
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.24
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.22
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.19
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.17
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.12
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.09
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.08
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.05
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.81
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.65
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.64
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.59
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.59
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.54
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.5
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.45
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.41
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.36
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.35
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	98.33
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	98.25
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.23
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.23
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.15
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.06
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.03
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.96
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	97.95
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	97.89
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.89
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.87
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.83
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.75
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.75
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.74
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.72
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.72
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.7
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.69
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.6
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.52
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.47
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.44
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.41
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.04
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	96.92
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	96.86
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	96.7
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	95.24
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	95.01
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	94.04
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	93.8
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	91.43
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	90.3
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	86.7
d1bpoa1	157	Clathrin heavy-chain linker domain {Rat (Rattus no	85.17
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	83.32
d2nsza1	129	Programmed cell death 4, PDCD4 {Mouse (Mus musculu	81.99

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=8.3e-20  Score=167.57  Aligned_cols=368  Identities=10%  Similarity=-0.009  Sum_probs=291.8

Q ss_pred             CChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 048269           51 LSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNF  130 (465)
Q Consensus        51 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  130 (465)
                      ++++.|...|+.++...|.   ++..+..+..++.+.|++++|...|+++.+.++.+..++..+..++.+.|++++|+..
T Consensus        13 G~~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~~   89 (388)
T d1w3ba_          13 GDFEAAERHCMQLWRQEPD---NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEH   89 (388)
T ss_dssp             TCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccccccccc
Confidence            4788999999998666655   7889999999999999999999999999988887888999999999999999999999


Q ss_pred             HHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 048269          131 FHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEP  210 (465)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~  210 (465)
                      +....+.. +.+..............+....+............................+....+...+....... +-
T Consensus        90 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  167 (388)
T d1w3ba_          90 YRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PN  167 (388)
T ss_dssp             HHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TT
T ss_pred             cccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccC-cc
Confidence            99998865 44555555555555566666666666665553334555566666777778888888888888877653 33


Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048269          211 SIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSII  290 (465)
Q Consensus       211 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li  290 (465)
                      +...+..+...+...|++++|...++.....  .|.+...+..+...+...|++++|...+++....+. .+...+..+.
T Consensus       168 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~  244 (388)
T d1w3ba_         168 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL--DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAVVHGNLA  244 (388)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred             hhHHHHhhcccccccCcHHHHHHHHHHHHHh--CcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhh-hHHHHHHHHH
Confidence            5677888889999999999999999988875  554777889999999999999999999999887643 3677788888


Q ss_pred             HHHHhcCCHHHHHHHHHHhcC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccCCCC
Q 048269          291 YGLLARGRLREAYKVVEEIEK---PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKG  367 (465)
Q Consensus       291 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~  367 (465)
                      ..+.+.|++++|...|++..+   .+...+..+...+...|++++|.+.++...... +.+...                
T Consensus       245 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~----------------  307 (388)
T d1w3ba_         245 CVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADS----------------  307 (388)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHH----------------
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-Cccchh----------------
Confidence            999999999999999998766   456788888999999999999999999887542 222233                


Q ss_pred             CCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHhhccchHHHHHHHHHHHHcCCCCchhHHH
Q 048269          368 PDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVP-RFDYNKFLHYYSNEEGVVMFEEVGKKLREVGLADLADIFQ  446 (465)
Q Consensus       368 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~  446 (465)
                             +..+...+...|++++|++.+++..+  +.|+ ..++..+..++.+.|++++|...+++.++.. +-....+.
T Consensus       308 -------~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~  377 (388)
T d1w3ba_         308 -------LNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYS  377 (388)
T ss_dssp             -------HHHHHHHHHTTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHH
T ss_pred             -------hhHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence                   33445556899999999999999886  4565 4588889999999999999999999998764 22455667


Q ss_pred             HHHHHHh
Q 048269          447 RYGKKMA  453 (465)
Q Consensus       447 ~~~~~~~  453 (465)
                      .+|....
T Consensus       378 ~lg~~~~  384 (388)
T d1w3ba_         378 NMGNTLK  384 (388)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7776553

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=5.9e-19  Score=161.77  Aligned_cols=363  Identities=11%  Similarity=0.007  Sum_probs=291.8

Q ss_pred             HHhhhhhCCCCCCHHHHHHHHhcCCCChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCC
Q 048269           26 LHSSLSSCNFNLTHEFFLQICNNFPLSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRL  105 (465)
Q Consensus        26 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  105 (465)
                      +...++..|..+........+....++++.|...|+.++...|.   +..+|..+..++.+.|++++|++.+....+...
T Consensus        22 ~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~   98 (388)
T d1w3ba_          22 CMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL---LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKP   98 (388)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHhhhhcccccccccccccccccc
Confidence            44455555444333333334434446899999999999777765   789999999999999999999999999999888


Q ss_pred             CChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHH
Q 048269          106 VNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIK  185 (465)
Q Consensus       106 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~  185 (465)
                      ................+....+........... .................+....+...+.+.....+.+...+..+..
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  177 (388)
T d1w3ba_          99 DFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGC  177 (388)
T ss_dssp             TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHhhccCcchhHHHHhhcc
Confidence            777777777777777777777777776666654 3444555556667778888899988888877445667888999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChH
Q 048269          186 GYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKIS  265 (465)
Q Consensus       186 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~  265 (465)
                      .+...|+++.|...++...+.. +-+...+..+...+...|++++|...++......  |.+...+..+...+.+.|+++
T Consensus       178 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~  254 (388)
T d1w3ba_         178 VFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS--PNHAVVHGNLACVYYEQGLID  254 (388)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHH
T ss_pred             cccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh--hhHHHHHHHHHHHHHHCCCHH
Confidence            9999999999999999988753 2357788999999999999999999999988763  336778888999999999999


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048269          266 QAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK---PDISLYHGLIKGLLRLRRAREATQVFREMIK  342 (465)
Q Consensus       266 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  342 (465)
                      +|...|++..+... -+..++..+...+...|++++|...++....   .+...+..+...+...|++++|++.|++.++
T Consensus       255 ~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~  333 (388)
T d1w3ba_         255 LAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALE  333 (388)
T ss_dssp             HHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            99999999988643 3677889999999999999999999998876   6677888889999999999999999999874


Q ss_pred             cCCCCCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHhhcc
Q 048269          343 RGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVP-RFDYNKFLHYYSNEE  421 (465)
Q Consensus       343 ~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g  421 (465)
                        +.|+..                      .+|..+...|.+.|++++|++.|++..+  +.|+ ...|..+..++.+.|
T Consensus       334 --~~p~~~----------------------~~~~~la~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~lg~~~~~~~  387 (388)
T d1w3ba_         334 --VFPEFA----------------------AAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQ  387 (388)
T ss_dssp             --SCTTCH----------------------HHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTC
T ss_pred             --hCCCCH----------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcC
Confidence              355532                      2234456667999999999999999986  5675 558888988888776


Q ss_pred             c
Q 048269          422 G  422 (465)
Q Consensus       422 ~  422 (465)
                      |
T Consensus       388 D  388 (388)
T d1w3ba_         388 D  388 (388)
T ss_dssp             C
T ss_pred             C
Confidence            5

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.9e-13  Score=121.52  Aligned_cols=229  Identities=8%  Similarity=-0.051  Sum_probs=173.8

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCC
Q 048269           79 RMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKL  158 (465)
Q Consensus        79 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~  158 (465)
                      .....+.+.|++++|+..|+++.+.++.+..+|..+..++...|++++|+..|++..+.. +-+...+..+..+|...|+
T Consensus        24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~  102 (323)
T d1fcha_          24 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESL  102 (323)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccccc
Confidence            456677888899999999998888888778888888888888899999999888887764 4567778888888888899


Q ss_pred             HHHHHHHHHHhhcCCCCCHH---------------hHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCcHHHHHHHHHHH
Q 048269          159 VVEAKYLILKLSEWIKPNEI---------------AYGWLIKGYCDVGDLIEASKIWNLMTDEG-FEPSIDVVDKMIETF  222 (465)
Q Consensus       159 ~~~a~~~~~~m~~~~~~~~~---------------~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~~~~li~~~  222 (465)
                      +++|.+.+++.....+....               .....+..+...+.+.++...|....+.. -..+..++..+...+
T Consensus       103 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~  182 (323)
T d1fcha_         103 QRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLF  182 (323)
T ss_dssp             HHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHH
T ss_pred             ccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHH
Confidence            99988888887621111111               11112233445566777888887776542 234567788888888


Q ss_pred             HhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048269          223 FKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREA  302 (465)
Q Consensus       223 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a  302 (465)
                      ...|++++|...|+.....  .|.+..+|..+..+|...|++++|.+.|++..+... -+...+..+..+|.+.|++++|
T Consensus       183 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A  259 (323)
T d1fcha_         183 NLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP-GYIRSRYNLGISCINLGAHREA  259 (323)
T ss_dssp             HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHhhhhccccccccc--ccccccchhhhhhcccccccchhHHHHHHHHHHHhh-ccHHHHHHHHHHHHHCCCHHHH
Confidence            8999999999999988765  454677888888999999999999999998887532 2567788888899999999999


Q ss_pred             HHHHHHhcC
Q 048269          303 YKVVEEIEK  311 (465)
Q Consensus       303 ~~~~~~~~~  311 (465)
                      ...|++..+
T Consensus       260 ~~~~~~al~  268 (323)
T d1fcha_         260 VEHFLEALN  268 (323)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999888765

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=3.8e-13  Score=119.60  Aligned_cols=220  Identities=10%  Similarity=0.003  Sum_probs=183.3

Q ss_pred             CCCChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHH
Q 048269           49 FPLSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMV  128 (465)
Q Consensus        49 ~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  128 (465)
                      -.++.+.|...|+.++...|.   +..+|..+..++...|++++|...|++..+.++.+...+..+...+...|++++|.
T Consensus        31 ~~g~~~~A~~~~~~al~~~P~---~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~  107 (323)
T d1fcha_          31 QEGDLPNAVLLFEAAVQQDPK---HMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQAC  107 (323)
T ss_dssp             HTTCHHHHHHHHHHHHHSCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccccccccc
Confidence            335899999999999777765   89999999999999999999999999999988878889999999999999999999


Q ss_pred             HHHHHhhhCCCCCCHH----------------HHHHHHHHHHcCCCHHHHHHHHHHhh--cCCCCCHHhHHHHHHHHHhc
Q 048269          129 NFFHIMNDCGCEYSLE----------------MLNKVVKTLCQRKLVVEAKYLILKLS--EWIKPNEIAYGWLIKGYCDV  190 (465)
Q Consensus       129 ~~~~~~~~~~~~~~~~----------------~~~~ll~~~~~~~~~~~a~~~~~~m~--~~~~~~~~~~~~li~~~~~~  190 (465)
                      +.++......  |+..                .....+..+...+...+|...|.+..  .....+..++..+...+...
T Consensus       108 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~  185 (323)
T d1fcha_         108 EILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLS  185 (323)
T ss_dssp             HHHHHHHHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHT
T ss_pred             cchhhHHHhc--cchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHH
Confidence            9999987743  2211                11112223344566788888888876  33455678888999999999


Q ss_pred             CCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHH
Q 048269          191 GDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTM  270 (465)
Q Consensus       191 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~  270 (465)
                      |++++|+..|+...... +-+..+|..+..++.+.|++++|.+.|++..+.  .|.+..+|..+..+|.+.|++++|+..
T Consensus       186 ~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~  262 (323)
T d1fcha_         186 GEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEH  262 (323)
T ss_dssp             TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHH--hhccHHHHHHHHHHHHHCCCHHHHHHH
Confidence            99999999999998763 335788999999999999999999999999876  565788899999999999999999999


Q ss_pred             HHHHHH
Q 048269          271 LEEMFK  276 (465)
Q Consensus       271 ~~~m~~  276 (465)
                      |++..+
T Consensus       263 ~~~al~  268 (323)
T d1fcha_         263 FLEALN  268 (323)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998876

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.28  E-value=2.1e-09  Score=95.87  Aligned_cols=268  Identities=12%  Similarity=-0.015  Sum_probs=191.4

Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC-----hHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC----CC-CCHH
Q 048269           75 ITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVN-----DKTFKIALMTLAEVRELKKMVNFFHIMNDCG----CE-YSLE  144 (465)
Q Consensus        75 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~-~~~~  144 (465)
                      .........+...|++++|++++++..+..+.+     ..++..+...+...|++++|+..|+...+..    .. ....
T Consensus        13 e~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~   92 (366)
T d1hz4a_          13 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW   92 (366)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHH
Confidence            334445677888999999999999988766532     2356777888999999999999999876521    11 1133


Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHhh-----cCCCC---CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCcH
Q 048269          145 MLNKVVKTLCQRKLVVEAKYLILKLS-----EWIKP---NEIAYGWLIKGYCDVGDLIEASKIWNLMTDE----GFEPSI  212 (465)
Q Consensus       145 ~~~~ll~~~~~~~~~~~a~~~~~~m~-----~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~~~  212 (465)
                      .+..+...+...|++..+...+.+..     .....   ....+..+...+...|+++.+...+......    +.....
T Consensus        93 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  172 (366)
T d1hz4a_          93 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL  172 (366)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHH
Confidence            45566777888999999988888754     11111   2235566778888999999999999888763    222345


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---CHH
Q 048269          213 DVVDKMIETFFKINKDDEAMKVFQMMRVKRMDD-----LGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEA---DNL  284 (465)
Q Consensus       213 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~  284 (465)
                      ..+..+...+...+++..+...+..........     .....+..+...+...|+++.|...++.........   ...
T Consensus       173 ~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  252 (366)
T d1hz4a_         173 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG  252 (366)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHH
Confidence            566777778888899999888887665421111     012345566677888999999999998876543222   234


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHhcC---------CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048269          285 TLSSIIYGLLARGRLREAYKVVEEIEK---------PDISLYHGLIKGLLRLRRAREATQVFREMIK  342 (465)
Q Consensus       285 ~~~~li~~~~~~~~~~~a~~~~~~~~~---------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  342 (465)
                      .+..+...+...|++++|...++.+..         .....+..+...|...|++++|.+.+++.++
T Consensus       253 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~  319 (366)
T d1hz4a_         253 QWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK  319 (366)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            456678889999999999999988764         2234577778889999999999999998764

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1e-09  Score=96.24  Aligned_cols=216  Identities=6%  Similarity=-0.021  Sum_probs=162.1

Q ss_pred             HHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcC-CHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 048269           74 SITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVR-ELKKMVNFFHIMNDCGCEYSLEMLNKVVKT  152 (465)
Q Consensus        74 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~  152 (465)
                      ...|+.+-..+.+.+.+++|+++++++.+.++.+..+|+....++...| ++++|+..++...+.. +-+..+|+.+..+
T Consensus        43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~  121 (315)
T d2h6fa1          43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL  121 (315)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHH
Confidence            4556667777888888999999999999988888888888888888766 4899999999888765 5678888888888


Q ss_pred             HHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCC-----
Q 048269          153 LCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINK-----  227 (465)
Q Consensus       153 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-----  227 (465)
                      +.+.|++++|+..++++..-.+.+...|..+...+.+.|++++|+..++.+.+.. +-+...|+.+...+.+.+.     
T Consensus       122 ~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~~~  200 (315)
T d2h6fa1         122 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRA  200 (315)
T ss_dssp             HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred             HHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccchhh
Confidence            9999999999999999885557788899999999999999999999999998864 2356677777666665554     


Q ss_pred             -HHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHH
Q 048269          228 -DDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEA-DNLTLSSIIYGLL  294 (465)
Q Consensus       228 -~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~  294 (465)
                       +++|++.+....+.  .|.+...|..+...+.. ...+++...++...+....+ +...+..++..|.
T Consensus       201 ~~~~ai~~~~~al~~--~P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~  266 (315)
T d2h6fa1         201 VLEREVQYTLEMIKL--VPHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE  266 (315)
T ss_dssp             HHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred             hhHHhHHHHHHHHHh--CCCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHH
Confidence             57788888887766  45467777776665544 34566777777665543222 3445555555543

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=1.5e-09  Score=95.20  Aligned_cols=205  Identities=5%  Similarity=-0.071  Sum_probs=167.9

Q ss_pred             CCChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcC-ChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHH
Q 048269           50 PLSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSR-NIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMV  128 (465)
Q Consensus        50 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  128 (465)
                      ....+.|+..++.++...|.   +...|+....++...| ++++|+..++...+.++-+..+|..+...+.+.|++++|+
T Consensus        56 ~e~~~~Al~~~~~ai~lnP~---~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl  132 (315)
T d2h6fa1          56 DERSERAFKLTRDAIELNAA---NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQEL  132 (315)
T ss_dssp             TCCCHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHH
T ss_pred             CCchHHHHHHHHHHHHHCCC---ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHH
Confidence            34779999999999888887   8999999999998876 5899999999999999989999999999999999999999


Q ss_pred             HHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCC------HHHHHHHHHH
Q 048269          129 NFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGD------LIEASKIWNL  202 (465)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~------~~~a~~~~~~  202 (465)
                      +.++.+.+.. +.+...|..+..++...|++++|++.++++..-.+.+...|+.+...+.+.+.      +++|+..+..
T Consensus       133 ~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~  211 (315)
T d2h6fa1         133 EFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLE  211 (315)
T ss_dssp             HHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHH
T ss_pred             HHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHH
Confidence            9999999875 66799999999999999999999999999985457788888888777766655      5789998988


Q ss_pred             HHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHh
Q 048269          203 MTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCK  260 (465)
Q Consensus       203 m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~  260 (465)
                      ..+.. +-+...|+.+...+.. ...+++.+.++...+....+.+...+..++..|..
T Consensus       212 al~~~-P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~  267 (315)
T d2h6fa1         212 MIKLV-PHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYED  267 (315)
T ss_dssp             HHHHS-TTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred             HHHhC-CCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHH
Confidence            88764 3367777777666554 44677888888877654444345556666666643

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.22  E-value=5.5e-09  Score=93.07  Aligned_cols=273  Identities=10%  Similarity=-0.034  Sum_probs=156.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC----HHHHHHHHHHHHcCCCHHHHHHHHHHhh--cCCCC----CHHh
Q 048269          110 TFKIALMTLAEVRELKKMVNFFHIMNDCGCEYS----LEMLNKVVKTLCQRKLVVEAKYLILKLS--EWIKP----NEIA  179 (465)
Q Consensus       110 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~--~~~~~----~~~~  179 (465)
                      ........+...|++++|+.++++..+.....+    ...+..+..++...|++++|+..|++..  ....+    ...+
T Consensus        14 ~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~   93 (366)
T d1hz4a_          14 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS   93 (366)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHH
Confidence            344445667778888888888887776431111    2356666777778888888888887765  11111    1334


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCC---cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CCcc
Q 048269          180 YGWLIKGYCDVGDLIEASKIWNLMTD----EGFEP---SIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDD---LGLS  249 (465)
Q Consensus       180 ~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~---~~~~  249 (465)
                      +..+...+...|++..+...+.....    .+...   ....+..+...+...|+++.+...+..........   ....
T Consensus        94 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  173 (366)
T d1hz4a_          94 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ  173 (366)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHH
Confidence            55566677777888888777776653    11111   12345556667777788888877777766542211   0223


Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHhcC-------CCHhh
Q 048269          250 TYRIVIDWMCKRGKISQAYTMLEEMFKR----GIEA--DNLTLSSIIYGLLARGRLREAYKVVEEIEK-------PDISL  316 (465)
Q Consensus       250 ~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-------~~~~~  316 (465)
                      ++......+...++...+...+.+....    +..+  ....+..+...+...|+.+.|...++....       .....
T Consensus       174 ~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  253 (366)
T d1hz4a_         174 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ  253 (366)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHH
Confidence            3444555666777777777776655432    1111  112234445556667777777777766654       11233


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcCCHHHHHHHHH
Q 048269          317 YHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVE  396 (465)
Q Consensus       317 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~  396 (465)
                      +..+...+...|++++|...+++.+...-.......                  ....+..+...|.+.|++++|.+.++
T Consensus       254 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------------------~~~~~~~la~~~~~~g~~~~A~~~l~  315 (366)
T d1hz4a_         254 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSD------------------LNRNLLLLNQLYWQAGRKSDAQRVLL  315 (366)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH------------------HHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChH------------------HHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            444566666777777777777666532111000000                  11234456666777777777777777


Q ss_pred             HHHh
Q 048269          397 RVMN  400 (465)
Q Consensus       397 ~m~~  400 (465)
                      +..+
T Consensus       316 ~Al~  319 (366)
T d1hz4a_         316 DALK  319 (366)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6655

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.19  E-value=6.7e-09  Score=90.79  Aligned_cols=149  Identities=9%  Similarity=0.037  Sum_probs=63.9

Q ss_pred             HHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 048269          125 KKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPN-EIAYGWLIKGYCDVGDLIEASKIWNLM  203 (465)
Q Consensus       125 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m  203 (465)
                      ++|..+|++..+...+.+...|...+..+.+.|+.+.|..+|+++....+.+ ..+|...+..+.+.|+.+.|.++|+.+
T Consensus        81 ~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~a  160 (308)
T d2onda1          81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA  160 (308)
T ss_dssp             HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            4444455544443223334444444444455555555555555544211222 223444445555555555555555554


Q ss_pred             HHCCCCCcHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048269          204 TDEGFEPSIDVVDKMIET-FFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFK  276 (465)
Q Consensus       204 ~~~g~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  276 (465)
                      .+.+. .+...|...... +...|+.+.|..+|+.+...  .|.+...|...+..+.+.|+.+.|..+|++...
T Consensus       161 l~~~~-~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~  231 (308)
T d2onda1         161 REDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT  231 (308)
T ss_dssp             HTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHhCC-CcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            44321 122222222211 12234444455555444443  222344444444444444555555555544443

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.17  E-value=8.4e-09  Score=90.15  Aligned_cols=220  Identities=10%  Similarity=0.026  Sum_probs=168.1

Q ss_pred             hHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhc--------------CChhHHHHHHHHHhhCCC-CChHHHHHHHHHH
Q 048269           54 RPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKS--------------RNIDLFWETLQEMGRRRL-VNDKTFKIALMTL  118 (465)
Q Consensus        54 ~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~  118 (465)
                      +.+..+|+.++...+.   ++..|...+..+.+.              +..++|..+|++..+... .+...|...+...
T Consensus        33 ~Rv~~vyerAl~~~~~---~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~  109 (308)
T d2onda1          33 KRVMFAYEQCLLVLGH---HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYE  109 (308)
T ss_dssp             HHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            3456677777554443   677777766655432              345788999999887644 4566788888999


Q ss_pred             HhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHH-HHhcCCHHHHH
Q 048269          119 AEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKG-YCDVGDLIEAS  197 (465)
Q Consensus       119 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~-~~~~g~~~~a~  197 (465)
                      .+.|+++.|..+|+.+.+........+|...+..+.+.|+.+.|.++|++.....+.+...|...... +...|+.+.|.
T Consensus       110 ~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~  189 (308)
T d2onda1         110 ESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAF  189 (308)
T ss_dssp             HHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred             HhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHH
Confidence            99999999999999998865333456789999999999999999999999885445555555554443 34468999999


Q ss_pred             HHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC-CcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 048269          198 KIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRM-DDL-GLSTYRIVIDWMCKRGKISQAYTMLEEMF  275 (465)
Q Consensus       198 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~  275 (465)
                      .+|+.+.+. .+.+...|...+..+.+.|+++.|..+|++...... .|. ....|...+.--...|+.+.+.++++++.
T Consensus       190 ~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~  268 (308)
T d2onda1         190 KIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF  268 (308)
T ss_dssp             HHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            999999886 344678899999999999999999999999887642 321 12367887877788899999999999886


Q ss_pred             HC
Q 048269          276 KR  277 (465)
Q Consensus       276 ~~  277 (465)
                      +.
T Consensus       269 ~~  270 (308)
T d2onda1         269 TA  270 (308)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.12  E-value=1.8e-09  Score=91.84  Aligned_cols=217  Identities=7%  Similarity=-0.083  Sum_probs=138.6

Q ss_pred             hHHHHHHHHHhhcCCCCCC--CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 048269           54 RPVYLFFQYTQKAQPCFAH--NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFF  131 (465)
Q Consensus        54 ~~a~~~f~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  131 (465)
                      +.++..++.. .......+  ...+|..+..+|.+.|++++|+..|++..+.++.+..+|..+..++.+.|++++|+..|
T Consensus        16 e~al~~~~e~-l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~   94 (259)
T d1xnfa_          16 EVILARMEQI-LASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAF   94 (259)
T ss_dssp             HHHHHHHHHH-HTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHH-HHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhh
Confidence            4555566665 32222222  33567777888888999999999999988888878888888999999999999999999


Q ss_pred             HHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCc
Q 048269          132 HIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPS  211 (465)
Q Consensus       132 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~  211 (465)
                      +.+.+.. +-+..++..+..++...|++++|.+.|++.....+.+......+..++.+.+..+.+..+........-  +
T Consensus        95 ~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  171 (259)
T d1xnfa_          95 DSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDK--E  171 (259)
T ss_dssp             HHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCC--C
T ss_pred             hHHHHHH-hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccch--h
Confidence            8888864 445667888888888889999999988887733345555555555555666666666555555555322  1


Q ss_pred             HHHHHHHHHHHHhcCC----HHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 048269          212 IDVVDKMIETFFKINK----DDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKR  277 (465)
Q Consensus       212 ~~~~~~li~~~~~~g~----~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  277 (465)
                      ...++ ++..+.....    .+.+...+......  .|....+|..+...|...|++++|.+.|++....
T Consensus       172 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  238 (259)
T d1xnfa_         172 QWGWN-IVEFYLGNISEQTLMERLKADATDNTSL--AEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN  238 (259)
T ss_dssp             STHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             hhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhc--CcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence            11121 2222222211    22222222111111  1212345666777788888888888888877765

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.09  E-value=8.8e-10  Score=97.86  Aligned_cols=248  Identities=9%  Similarity=-0.026  Sum_probs=146.5

Q ss_pred             ChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHH----------hcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhc
Q 048269           52 SWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIG----------KSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEV  121 (465)
Q Consensus        52 ~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~----------~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~  121 (465)
                      ..+.|+.+++.++...|.   +...|+..-..+.          ..|++++|+..++...+.++.+...|..+..++...
T Consensus        44 ~~~~al~~~~~~l~~~P~---~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~  120 (334)
T d1dcea1          44 LDESVLELTSQILGANPD---FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL  120 (334)
T ss_dssp             CSHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC
T ss_pred             ccHHHHHHHHHHHHHCCC---cHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHh
Confidence            346777777777666655   4555544332222          223456777777777776666666666666666555


Q ss_pred             CC--HHHHHHHHHHhhhCCCCCCHHHHHH-HHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 048269          122 RE--LKKMVNFFHIMNDCGCEYSLEMLNK-VVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASK  198 (465)
Q Consensus       122 ~~--~~~a~~~~~~~~~~~~~~~~~~~~~-ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~  198 (465)
                      ++  +++|+..++.+.+.. +++...+.. ....+...+..++|+..+++.....+-+..+|+.+...+.+.|++++|..
T Consensus       121 ~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~  199 (334)
T d1dcea1         121 PEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP  199 (334)
T ss_dssp             SSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred             ccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHH
Confidence            43  677777777776653 344554433 33555566777777777777664455667777777777777777766654


Q ss_pred             HHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 048269          199 IWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRG  278 (465)
Q Consensus       199 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~  278 (465)
                      .+....+.  .|+   .......+...+..+++...+......  .|.+...+..+...+...++.++|...+.+.....
T Consensus       200 ~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  272 (334)
T d1dcea1         200 QGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLG--RAEPLFRCELSVEKSTVLQSELESCKELQELEPEN  272 (334)
T ss_dssp             CCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHS--CCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHh--CcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence            44433321  111   112233344455566666666665544  23255556666666666677777777776665542


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC
Q 048269          279 IEADNLTLSSIIYGLLARGRLREAYKVVEEIEK  311 (465)
Q Consensus       279 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~  311 (465)
                      . -+...+..+..+|...|+.++|.+.++.+.+
T Consensus       273 p-~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~  304 (334)
T d1dcea1         273 K-WCLLTIILLMRALDPLLYEKETLQYFSTLKA  304 (334)
T ss_dssp             H-HHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH
T ss_pred             c-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            1 1344555566666677777777777776666

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.08  E-value=2e-09  Score=91.68  Aligned_cols=149  Identities=9%  Similarity=-0.147  Sum_probs=92.1

Q ss_pred             hhHHHHHHHHHhhCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 048269           90 IDLFWETLQEMGRRRLVN----DKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYL  165 (465)
Q Consensus        90 ~~~a~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~  165 (465)
                      .+.++.-+++.......+    ..++..+..+|.+.|++++|++.|+...+.. +-+..+|+.+..++.+.|++++|+..
T Consensus        15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~   93 (259)
T d1xnfa_          15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEA   93 (259)
T ss_dssp             HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhh
Confidence            344555555555443321    2366666777777778888877777777754 45667777777777777777777777


Q ss_pred             HHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048269          166 ILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRV  240 (465)
Q Consensus       166 ~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  240 (465)
                      |++...-.+.+..++..+..+|...|++++|...|+...+.. +.+......+..++.+.+..+.+..+......
T Consensus        94 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (259)
T d1xnfa_          94 FDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK  167 (259)
T ss_dssp             HHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence            777763334456667777777777777777777777776653 22333333344444445554444444444443

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.05  E-value=1.5e-09  Score=96.33  Aligned_cols=266  Identities=9%  Similarity=-0.055  Sum_probs=194.2

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHH----------HhcCCHHHHHHHHHHhhhCCCCCCHHHH
Q 048269           77 FNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTL----------AEVRELKKMVNFFHIMNDCGCEYSLEML  146 (465)
Q Consensus        77 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~----------~~~~~~~~a~~~~~~~~~~~~~~~~~~~  146 (465)
                      ...++......+..++|+++++...+.++.+...|+..-..+          ...|++++|+.+++...+.. +-+...|
T Consensus        32 ~~~~~~~~~~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~  110 (334)
T d1dcea1          32 TQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTW  110 (334)
T ss_dssp             HHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred             HHHHHHHHhcccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHH
Confidence            334444444445568999999999998887766665443332          23445789999999988865 5577778


Q ss_pred             HHHHHHHHcCC--CHHHHHHHHHHhhcCCCCCHHhHHH-HHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHH
Q 048269          147 NKVVKTLCQRK--LVVEAKYLILKLSEWIKPNEIAYGW-LIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFF  223 (465)
Q Consensus       147 ~~ll~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~-li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~  223 (465)
                      ..+..++...+  ++++|...++++....+++...+.. ....+...+.++.|+..++.+.+.. +-+...|+.+...+.
T Consensus       111 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~  189 (334)
T d1dcea1         111 HHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLP  189 (334)
T ss_dssp             HHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHH
T ss_pred             HHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence            87777777665  5899999999988444666776654 4467778899999999999998875 347888999999999


Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048269          224 KINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAY  303 (465)
Q Consensus       224 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~  303 (465)
                      +.|++++|...+......  .|   . .......+...+..+.+...+....... +++...+..+...+...++.++|.
T Consensus       190 ~~~~~~~A~~~~~~~~~~--~~---~-~~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~  262 (334)
T d1dcea1         190 QLHPQPDSGPQGRLPENV--LL---K-ELELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESC  262 (334)
T ss_dssp             HHSCCCCSSSCCSSCHHH--HH---H-HHHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHhHHh--HH---H-HHHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHH
Confidence            999998887666544332  11   1 1223344566677778888888877664 335556667777888889999999


Q ss_pred             HHHHHhcCCC---HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 048269          304 KVVEEIEKPD---ISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYI  353 (465)
Q Consensus       304 ~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~  353 (465)
                      ..+.+....+   ...+..+...|...|++++|.+.|++.++.  .|+...|.
T Consensus       263 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l--dP~~~~y~  313 (334)
T d1dcea1         263 KELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV--DPMRAAYL  313 (334)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH--CGGGHHHH
T ss_pred             HHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CcccHHHH
Confidence            9999998844   455667788899999999999999999864  67654443

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.81  E-value=3.4e-07  Score=78.87  Aligned_cols=199  Identities=16%  Similarity=0.016  Sum_probs=99.3

Q ss_pred             HHHHHHhcCCHHHHHHHHHHhhhC----CCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHhh---cC---CCCCHHhHHH
Q 048269          114 ALMTLAEVRELKKMVNFFHIMNDC----GCEY-SLEMLNKVVKTLCQRKLVVEAKYLILKLS---EW---IKPNEIAYGW  182 (465)
Q Consensus       114 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~---~~---~~~~~~~~~~  182 (465)
                      ....|...+++++|.+.|.+..+.    +-++ -..+|+.+..+|.+.|++++|++.+++..   ..   ......++..
T Consensus        43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  122 (290)
T d1qqea_          43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE  122 (290)
T ss_dssp             HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence            345666667777777777666542    1111 12456666677777777777777776644   10   0111334444


Q ss_pred             HHHHHHh-cCCHHHHHHHHHHHHH----CCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCc------ch
Q 048269          183 LIKGYCD-VGDLIEASKIWNLMTD----EGFEP-SIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGL------ST  250 (465)
Q Consensus       183 li~~~~~-~g~~~~a~~~~~~m~~----~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~------~~  250 (465)
                      +...|.. .|++++|+..+.+..+    .+-.+ ...++..+...+...|++++|.+.|++........ ..      ..
T Consensus       123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~-~~~~~~~~~~  201 (290)
T d1qqea_         123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN-RLSQWSLKDY  201 (290)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSC-TTTGGGHHHH
T ss_pred             HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccc-hhhhhhHHHH
Confidence            4444533 4677777766666543    11111 12345566666666677777777766665442111 10      11


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC---HHHHHHHHHHHHh--cCCHHHHHHHHHHhcCCC
Q 048269          251 YRIVIDWMCKRGKISQAYTMLEEMFKRGIE-AD---NLTLSSIIYGLLA--RGRLREAYKVVEEIEKPD  313 (465)
Q Consensus       251 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~---~~~~~~li~~~~~--~~~~~~a~~~~~~~~~~~  313 (465)
                      +...+..+...|+++.|...+++..+.... ++   ......++.++..  .+.+++|...|+.+.+.|
T Consensus       202 ~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD  270 (290)
T d1qqea_         202 FLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLD  270 (290)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCC
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcC
Confidence            223334445566666666666665543211 01   1223334444433  233555555555544433

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.65  E-value=2e-06  Score=73.80  Aligned_cols=233  Identities=13%  Similarity=0.074  Sum_probs=154.1

Q ss_pred             HHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh-
Q 048269           92 LFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLS-  170 (465)
Q Consensus        92 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~-  170 (465)
                      ++.+++++..+.+.+....+..+.  -...+++++|.++|.++               ..+|...|++++|.+.|.+.. 
T Consensus         3 ~~~~~l~~aek~~~~~~~~~~~~~--~~~~~~~~~Aa~~y~~a---------------a~~y~~~~~~~~A~~~y~kA~~   65 (290)
T d1qqea_           3 DPVELLKRAEKKGVPSSGFMKLFS--GSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAAD   65 (290)
T ss_dssp             CHHHHHHHHHHHSSCCCTHHHHHS--CCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhcCcchhHHHHhc--CCccccHHHHHHHHHHH---------------HHHHHHCcCHHHHHHHHHHHHH
Confidence            345556655554443332222111  01223467777666544               567888999999999999876 


Q ss_pred             ----cCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCcHHHHHHHHHHHHh-cCCHHHHHHHHHHHH
Q 048269          171 ----EWIKP-NEIAYGWLIKGYCDVGDLIEASKIWNLMTDE----GF-EPSIDVVDKMIETFFK-INKDDEAMKVFQMMR  239 (465)
Q Consensus       171 ----~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~  239 (465)
                          .+.++ -..+|..+..+|.+.|++++|...++...+.    |- .....++..+...|.. .|++++|++.+++..
T Consensus        66 ~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~  145 (290)
T d1qqea_          66 YQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAG  145 (290)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHH
Confidence                11111 2467889999999999999999999987652    21 1124556677777754 699999999998875


Q ss_pred             Hc----CCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHh
Q 048269          240 VK----RMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADN------LTLSSIIYGLLARGRLREAYKVVEEI  309 (465)
Q Consensus       240 ~~----~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~------~~~~~li~~~~~~~~~~~a~~~~~~~  309 (465)
                      +.    +..+....++..+...+...|++++|...|++..........      ..+...+..+...|+++.|...+++.
T Consensus       146 ~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~  225 (290)
T d1qqea_         146 EWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEG  225 (290)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGG
T ss_pred             HHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            42    211112345788899999999999999999998875322111      12344555677899999999999999


Q ss_pred             cC--C---C---HhhHHHHHHHHHhc--CCHHHHHHHHHHHH
Q 048269          310 EK--P---D---ISLYHGLIKGLLRL--RRAREATQVFREMI  341 (465)
Q Consensus       310 ~~--~---~---~~~~~~li~~~~~~--~~~~~a~~~~~~m~  341 (465)
                      .+  |   +   ......++.++...  +.+++|+..|+++.
T Consensus       226 ~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~  267 (290)
T d1qqea_         226 QSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM  267 (290)
T ss_dssp             GCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred             HHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence            87  2   2   22445566666552  45788888887654

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=8.2e-07  Score=64.50  Aligned_cols=102  Identities=13%  Similarity=-0.151  Sum_probs=67.9

Q ss_pred             HHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCH
Q 048269           80 MVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLV  159 (465)
Q Consensus        80 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~  159 (465)
                      -...+.+.|++++|+..|++..+.++.+...|..+..++...|++++|+..++...+.+ +.+...|..+..++...|++
T Consensus         9 ~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~   87 (117)
T d1elwa_           9 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRF   87 (117)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCH
Confidence            34556667777777777777777666666677777777777777777777777776654 55666677777777777777


Q ss_pred             HHHHHHHHHhhcCCCCCHHhHHH
Q 048269          160 VEAKYLILKLSEWIKPNEIAYGW  182 (465)
Q Consensus       160 ~~a~~~~~~m~~~~~~~~~~~~~  182 (465)
                      ++|+..|++.....+-+...+..
T Consensus        88 ~~A~~~~~~a~~~~p~~~~~~~~  110 (117)
T d1elwa_          88 EEAKRTYEEGLKHEANNPQLKEG  110 (117)
T ss_dssp             HHHHHHHHHHHTTCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHH
Confidence            77777777766433444444333

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=2.5e-06  Score=68.04  Aligned_cols=121  Identities=7%  Similarity=-0.106  Sum_probs=64.2

Q ss_pred             HHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHH
Q 048269           82 DIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVE  161 (465)
Q Consensus        82 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~  161 (465)
                      ..+...|+++.|++.|+++   ..+++.+|..+..++...|++++|++.|++..+.. +-+...|..+..++.+.|++++
T Consensus        13 ~~~~~~~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~   88 (192)
T d1hh8a_          13 VLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDL   88 (192)
T ss_dssp             HHHHHTTCHHHHHHHHHTS---SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHCCCHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHH
Confidence            3445556666666666543   22344555556666666666666666666665544 3445555566666666666666


Q ss_pred             HHHHHHHhhcCCCCC----------------HHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048269          162 AKYLILKLSEWIKPN----------------EIAYGWLIKGYCDVGDLIEASKIWNLMTDE  206 (465)
Q Consensus       162 a~~~~~~m~~~~~~~----------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  206 (465)
                      |++.|++.....+.+                ..++..+..++.+.|++++|.+.|....+.
T Consensus        89 A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~  149 (192)
T d1hh8a_          89 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM  149 (192)
T ss_dssp             HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            666665543111111                123334444555555555555555555443

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=3e-06  Score=67.57  Aligned_cols=84  Identities=14%  Similarity=-0.023  Sum_probs=39.2

Q ss_pred             HHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHH
Q 048269          117 TLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEA  196 (465)
Q Consensus       117 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a  196 (465)
                      .+...|+++.|++.|+.+.    +|+..+|..+..+|...|++++|++.|++...-.+.+...|..+..+|.+.|++++|
T Consensus        14 ~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A   89 (192)
T d1hh8a_          14 LAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLA   89 (192)
T ss_dssp             HHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHH
Confidence            3344455555555544331    334444444445555555555555555554422233444444444445555555555


Q ss_pred             HHHHHHHH
Q 048269          197 SKIWNLMT  204 (465)
Q Consensus       197 ~~~~~~m~  204 (465)
                      .+.|++..
T Consensus        90 ~~~~~kAl   97 (192)
T d1hh8a_          90 IKDLKEAL   97 (192)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            54444443

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=1.4e-06  Score=67.28  Aligned_cols=89  Identities=3%  Similarity=-0.181  Sum_probs=47.5

Q ss_pred             HHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHH
Q 048269           81 VDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVV  160 (465)
Q Consensus        81 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~  160 (465)
                      ...|.+.|++++|+..|++..+.++.+...|..+..++...|++++|+..|+...+.. +-+..+|..+..++...|+++
T Consensus        17 gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~~~   95 (159)
T d1a17a_          17 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR   95 (159)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCCHH
Confidence            3344555555555555555555555555555555555555555555555555555443 334445555555555555555


Q ss_pred             HHHHHHHHhh
Q 048269          161 EAKYLILKLS  170 (465)
Q Consensus       161 ~a~~~~~~m~  170 (465)
                      +|...+++..
T Consensus        96 eA~~~~~~a~  105 (159)
T d1a17a_          96 AALRDYETVV  105 (159)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            5555555544

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.50  E-value=3e-07  Score=74.31  Aligned_cols=98  Identities=5%  Similarity=-0.115  Sum_probs=71.7

Q ss_pred             CCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 048269           72 HNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVK  151 (465)
Q Consensus        72 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~  151 (465)
                      |+...+......+.+.|++++|+..|++....++.++.+|..+..+|.+.|++++|+..|+...+.. +-+..+|..+..
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg~   80 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ   80 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHHH
Confidence            5666666677777777777777777777777777677777777777777777777777777777653 335666777777


Q ss_pred             HHHcCCCHHHHHHHHHHhh
Q 048269          152 TLCQRKLVVEAKYLILKLS  170 (465)
Q Consensus       152 ~~~~~~~~~~a~~~~~~m~  170 (465)
                      +|.+.|++++|+..|++..
T Consensus        81 ~~~~l~~~~~A~~~~~~al   99 (201)
T d2c2la1          81 CQLEMESYDEAIANLQRAY   99 (201)
T ss_dssp             HHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHH
Confidence            7777777777777777654

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=3.9e-06  Score=60.80  Aligned_cols=86  Identities=13%  Similarity=-0.021  Sum_probs=34.8

Q ss_pred             HHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 048269          153 LCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAM  232 (465)
Q Consensus       153 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~  232 (465)
                      +.+.|++++|+..|++...-.+.+...|..+..+|...|++++|+..+....+.+ +.+...|..+..++...|++++|+
T Consensus        13 ~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~~~A~   91 (117)
T d1elwa_          13 ALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRFEEAK   91 (117)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCHHHHH
Confidence            3334444444444444332223333444444444444444444444444444332 223334444444444444444444


Q ss_pred             HHHHHHH
Q 048269          233 KVFQMMR  239 (465)
Q Consensus       233 ~~~~~m~  239 (465)
                      ..|+...
T Consensus        92 ~~~~~a~   98 (117)
T d1elwa_          92 RTYEEGL   98 (117)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            4444443

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=5.6e-06  Score=63.75  Aligned_cols=92  Identities=8%  Similarity=-0.027  Sum_probs=64.9

Q ss_pred             HHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCH
Q 048269          114 ALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDL  193 (465)
Q Consensus       114 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~  193 (465)
                      ....+.+.|++++|+..|+...+.. +.+...|..+..+|...|++++|+..|++...-.+.+..+|..+..++...|++
T Consensus        16 ~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~   94 (159)
T d1a17a_          16 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF   94 (159)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCH
Confidence            3456667777777777777777764 456667777777777777777777777776643455666777777777777777


Q ss_pred             HHHHHHHHHHHHC
Q 048269          194 IEASKIWNLMTDE  206 (465)
Q Consensus       194 ~~a~~~~~~m~~~  206 (465)
                      ++|...+++..+.
T Consensus        95 ~eA~~~~~~a~~~  107 (159)
T d1a17a_          95 RAALRDYETVVKV  107 (159)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHc
Confidence            7777777777665

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.36  E-value=1.9e-06  Score=61.88  Aligned_cols=89  Identities=7%  Similarity=-0.084  Sum_probs=58.1

Q ss_pred             HHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCH
Q 048269           80 MVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLV  159 (465)
Q Consensus        80 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~  159 (465)
                      +...+.+.|++++|+..|++..+.++.+..+|..+..++.+.|++++|+..|+...+.. +.+...+..+..+|...|++
T Consensus        22 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~~  100 (112)
T d1hxia_          22 EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNA  100 (112)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCCH
Confidence            44556666677777777776666666666666666666666677777777666666654 44566666666666666666


Q ss_pred             HHHHHHHHHh
Q 048269          160 VEAKYLILKL  169 (465)
Q Consensus       160 ~~a~~~~~~m  169 (465)
                      ++|++.+++.
T Consensus       101 ~~A~~~l~~~  110 (112)
T d1hxia_         101 NAALASLRAW  110 (112)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            6666666653

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.35  E-value=4.8e-06  Score=66.93  Aligned_cols=94  Identities=10%  Similarity=-0.151  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHh
Q 048269          110 TFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCD  189 (465)
Q Consensus       110 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~  189 (465)
                      .+......+.+.|++++|+..|+...+.. +.+...|+.+..+|.+.|++++|+..|++...-.+-+..+|..+..+|..
T Consensus         6 ~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~   84 (201)
T d2c2la1           6 ELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE   84 (201)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            33344444445555555555554444432 33444444444444444455555444444442223334444444444444


Q ss_pred             cCCHHHHHHHHHHHH
Q 048269          190 VGDLIEASKIWNLMT  204 (465)
Q Consensus       190 ~g~~~~a~~~~~~m~  204 (465)
                      .|++++|+..|+...
T Consensus        85 l~~~~~A~~~~~~al   99 (201)
T d2c2la1          85 MESYDEAIANLQRAY   99 (201)
T ss_dssp             TTCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHH
Confidence            444444444444443

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.33  E-value=0.00069  Score=58.09  Aligned_cols=292  Identities=12%  Similarity=0.008  Sum_probs=135.5

Q ss_pred             CCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 048269           72 HNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVK  151 (465)
Q Consensus        72 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~  151 (465)
                      ||..--..+.+.|.+.|.++.|..++..+.        -|..++..+.+.++++.|.+++...      -+..+|..+..
T Consensus        12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~--------d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~   77 (336)
T d1b89a_          12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS--------NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCF   77 (336)
T ss_dssp             C----------------CTTTHHHHHHHTT--------CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHH
T ss_pred             CCcCCHHHHHHHHHHCCCHHHHHHHHHhCC--------CHHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHH
Confidence            355555556666667777777777776543        2666777777777777766665432      24556666666


Q ss_pred             HHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHH
Q 048269          152 TLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEA  231 (465)
Q Consensus       152 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A  231 (465)
                      .+.+......+.-+    ......++.....++..|-..|.+++...+++..... -..+...++.++..|++.+ .++.
T Consensus        78 ~l~~~~e~~la~i~----~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~-~~kl  151 (336)
T d1b89a_          78 ACVDGKEFRLAQMC----GLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK-PQKM  151 (336)
T ss_dssp             HHHHTTCHHHHHHT----TTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC-HHHH
T ss_pred             HHHhCcHHHHHHHH----HHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC-hHHH
Confidence            66665544332111    1222334444456666677777777777666665432 1345556666666666643 2333


Q ss_pred             HHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC
Q 048269          232 MKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK  311 (465)
Q Consensus       232 ~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~  311 (465)
                      .+.+...  .     +..-...++..|...+-++++.-++..                      .|+++.|..+.-.-. 
T Consensus       152 ~e~l~~~--s-----~~y~~~k~~~~c~~~~l~~elv~Ly~~----------------------~~~~~~A~~~~i~~~-  201 (336)
T d1b89a_         152 REHLELF--W-----SRVNIPKVLRAAEQAHLWAELVFLYDK----------------------YEEYDNAIITMMNHP-  201 (336)
T ss_dssp             HHHHHHH--S-----TTSCHHHHHHHHHTTTCHHHHHHHHHH----------------------TTCHHHHHHHHHHST-
T ss_pred             HHHHHhc--c-----ccCCHHHHHHHHHHcCChHHHHHHHHh----------------------cCCHHHHHHHHHHcc-
Confidence            3332221  1     222233444555555555444444433                      333333322221100 


Q ss_pred             CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcCCHHHH
Q 048269          312 PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDA  391 (465)
Q Consensus       312 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A  391 (465)
                      ++..-....+..+.+..+.+...++.....+.  .|+.  .+.++......          .--..++..+-+.++..-.
T Consensus       202 ~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~--~p~~--i~~lL~~v~~~----------~d~~r~V~~~~k~~~l~li  267 (336)
T d1b89a_         202 TDAWKEGQFKDIITKVANVELYYRAIQFYLEF--KPLL--LNDLLMVLSPR----------LDHTRAVNYFSKVKQLPLV  267 (336)
T ss_dssp             TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH--CGGG--HHHHHHHHGGG----------CCHHHHHHHHHHTTCTTTT
T ss_pred             hhhhhHHHHHHHHHccCChHHHHHHHHHHHHc--CHHH--HHHHHHHhccC----------CCHHHHHHHHHhcCCcHHH
Confidence            11222233344444444444444444443332  2321  12222222100          0012345555667777777


Q ss_pred             HHHHHHHHhCCCCCCHhhHHHHHHHHhhccchHHHHHHH
Q 048269          392 AKYVERVMNRGVEVPRFDYNKFLHYYSNEEGVVMFEEVG  430 (465)
Q Consensus       392 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~  430 (465)
                      ..+++...+.|   +..+.+++...|...++++.-+...
T Consensus       268 ~p~Le~v~~~n---~~~vn~al~~lyie~~d~~~l~~~i  303 (336)
T d1b89a_         268 KPYLRSVQNHN---NKSVNESLNNLFITEEDYQALRTSI  303 (336)
T ss_dssp             HHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHcC---hHHHHHHHHHHHhCcchhHHHHHHH
Confidence            77777665544   3457777777787777765544333

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.25  E-value=0.0011  Score=56.92  Aligned_cols=264  Identities=10%  Similarity=0.079  Sum_probs=167.2

Q ss_pred             HHHHHHHHhcCCC--ChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHH
Q 048269           39 HEFFLQICNNFPL--SWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALM  116 (465)
Q Consensus        39 ~~~~~~~l~~~~~--~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~  116 (465)
                      ......+...|..  .++.|..+|...  .         -|..++..+.+.++++.|.+.+.+..     +..+|..+..
T Consensus        14 ~~d~~~i~~~c~~~~lye~A~~lY~~~--~---------d~~rl~~~~v~l~~~~~avd~~~k~~-----~~~~~k~~~~   77 (336)
T d1b89a_          14 NAHIQQVGDRCYDEKMYDAAKLLYNNV--S---------NFGRLASTLVHLGEYQAAVDGARKAN-----STRTWKEVCF   77 (336)
T ss_dssp             ---------------CTTTHHHHHHHT--T---------CHHHHHHHHHTTTCHHHHHHHHHHHT-----CHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHCCCHHHHHHHHHhC--C---------CHHHHHHHHHhhccHHHHHHHHHHcC-----CHHHHHHHHH
Confidence            3344444444433  678899998874  2         27888999999999999998887652     6678999999


Q ss_pred             HHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHH
Q 048269          117 TLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEA  196 (465)
Q Consensus       117 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a  196 (465)
                      .|.+......+     .+.......++.....++..|-..|.+++...+++........+...++.++..|++.+ .++.
T Consensus        78 ~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl  151 (336)
T d1b89a_          78 ACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKM  151 (336)
T ss_dssp             HHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHH
T ss_pred             HHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHH
Confidence            99988777554     22333345566677789999999999999999999877444677888999999999865 3444


Q ss_pred             HHHHHHHHHCCCCCc--------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHH
Q 048269          197 SKIWNLMTDEGFEPS--------IDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAY  268 (465)
Q Consensus       197 ~~~~~~m~~~g~~~~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~  268 (465)
                      .+.+.... ..+.+.        ...|..++..|.+.|+++.|..+.-   .+  .+ +..-....+..+.+..+.+...
T Consensus       152 ~e~l~~~s-~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i---~~--~~-~~~~~~~f~e~~~k~~N~e~~~  224 (336)
T d1b89a_         152 REHLELFW-SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMM---NH--PT-DAWKEGQFKDIITKVANVELYY  224 (336)
T ss_dssp             HHHHHHHS-TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHH---HS--TT-TTCCHHHHHHHHHHCSSTHHHH
T ss_pred             HHHHHhcc-ccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHH---Hc--ch-hhhhHHHHHHHHHccCChHHHH
Confidence            44433321 112211        1124556666666677766655442   22  22 4555566677788888888777


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-------------HhcC-CCHhhHHHHHHHHHhcCCHHHHH
Q 048269          269 TMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVE-------------EIEK-PDISLYHGLIKGLLRLRRAREAT  334 (465)
Q Consensus       269 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~-------------~~~~-~~~~~~~~li~~~~~~~~~~~a~  334 (465)
                      ++.....+.    ++...+.++......-+..+..+.++             .... .+..+.+++...|...++++.-.
T Consensus       225 ~~i~~yL~~----~p~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~~n~~~vn~al~~lyie~~d~~~l~  300 (336)
T d1b89a_         225 RAIQFYLEF----KPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALR  300 (336)
T ss_dssp             HHHHHHHHH----CGGGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHc----CHHHHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHHcChHHHHHHHHHHHhCcchhHHHH
Confidence            777666553    23444555555555555555555444             4333 45677888889999998865533


Q ss_pred             H
Q 048269          335 Q  335 (465)
Q Consensus       335 ~  335 (465)
                      +
T Consensus       301 ~  301 (336)
T d1b89a_         301 T  301 (336)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=3.2e-06  Score=61.55  Aligned_cols=92  Identities=12%  Similarity=0.009  Sum_probs=48.0

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCC---HHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHH
Q 048269           79 RMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRE---LKKMVNFFHIMNDCGCEYS-LEMLNKVVKTLC  154 (465)
Q Consensus        79 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~  154 (465)
                      .++..+...+++++|.+.|+.....++.+..++..+..++.+.++   +++|+.+|+.+...+..|+ ..++..+..+|.
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~   83 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY   83 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence            345555555556666666666555555555555555555554333   2345555555554332222 124444555555


Q ss_pred             cCCCHHHHHHHHHHhh
Q 048269          155 QRKLVVEAKYLILKLS  170 (465)
Q Consensus       155 ~~~~~~~a~~~~~~m~  170 (465)
                      +.|++++|++.|+++.
T Consensus        84 ~~g~~~~A~~~~~~aL   99 (122)
T d1nzna_          84 RLKEYEKALKYVRGLL   99 (122)
T ss_dssp             HTTCHHHHHHHHHHHH
T ss_pred             HHhhhHHHHHHHHHHH
Confidence            5555555555555555

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.23  E-value=5.6e-06  Score=59.33  Aligned_cols=89  Identities=8%  Similarity=-0.114  Sum_probs=49.4

Q ss_pred             HHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCH
Q 048269          114 ALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDL  193 (465)
Q Consensus       114 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~  193 (465)
                      +...+.+.|++++|+..|+...+.. +-+...|..+..++.+.|++++|+..|++.....+.+..++..+...|...|++
T Consensus        22 ~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~  100 (112)
T d1hxia_          22 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA  100 (112)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCH
Confidence            3444555566666666666655543 334555555555555666666666666555533344555555555555555555


Q ss_pred             HHHHHHHHHH
Q 048269          194 IEASKIWNLM  203 (465)
Q Consensus       194 ~~a~~~~~~m  203 (465)
                      ++|.+.+++.
T Consensus       101 ~~A~~~l~~~  110 (112)
T d1hxia_         101 NAALASLRAW  110 (112)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            5555555543

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.15  E-value=0.0014  Score=54.53  Aligned_cols=111  Identities=12%  Similarity=-0.006  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCH
Q 048269          228 DDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCK----RGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLA----RGRL  299 (465)
Q Consensus       228 ~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~  299 (465)
                      ...+...+......+    +...+..+...|..    ..+...+..+++...+.|   +......+...|..    ..+.
T Consensus       126 ~~~a~~~~~~~~~~~----~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~  198 (265)
T d1ouva_         126 FKKAVEYFTKACDLN----DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNF  198 (265)
T ss_dssp             HHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCH
T ss_pred             hHHHHHHhhhhhccc----ccchhhhhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccch
Confidence            444444444433321    33444444444443    234445555555555443   33333344434433    3456


Q ss_pred             HHHHHHHHHhcC-CCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCC
Q 048269          300 REAYKVVEEIEK-PDISLYHGLIKGLLR----LRRAREATQVFREMIKRGC  345 (465)
Q Consensus       300 ~~a~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~  345 (465)
                      ++|...|+...+ -++..+..|...|.+    ..+.++|.+.|++..+.|.
T Consensus       199 ~~A~~~~~~aa~~g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~  249 (265)
T d1ouva_         199 KEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA  249 (265)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred             hhhhhhHhhhhcccCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence            666666666555 455555555555554    3366777777777766664

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.06  E-value=0.0021  Score=53.40  Aligned_cols=226  Identities=8%  Similarity=-0.109  Sum_probs=136.7

Q ss_pred             CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCCcchH
Q 048269          176 NEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFK----INKDDEAMKVFQMMRVKRMDDLGLSTY  251 (465)
Q Consensus       176 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~  251 (465)
                      |+..+..|...+.+.+|+++|++.|++..+.|   +...+..|...|..    ..+...|...+......+    +....
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~----~~~a~   73 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN----YSNGC   73 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc----ccchh
Confidence            34455566666667777777777777777665   44455555555554    456777777777666553    22333


Q ss_pred             HHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHhcC-CCHhhHHHHHH
Q 048269          252 RIVIDWMCK----RGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLL----ARGRLREAYKVVEEIEK-PDISLYHGLIK  322 (465)
Q Consensus       252 ~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~----~~~~~~~a~~~~~~~~~-~~~~~~~~li~  322 (465)
                      ..+...+..    ..+.+.|...++.....|..   .....+...+.    .......+...+..... .+...+..+..
T Consensus        74 ~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~  150 (265)
T d1ouva_          74 HLLGNLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGS  150 (265)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hccccccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhh
Confidence            344333332    34667777777777666532   22222322333    23445666666665444 66667777777


Q ss_pred             HHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHh----cCCHHHHHHH
Q 048269          323 GLLR----LRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVK----AGKSLDAAKY  394 (465)
Q Consensus       323 ~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~  394 (465)
                      .|..    ..+...+...++...+.|   +......                       +...|..    ..++++|+.+
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~-----------------------lg~~y~~g~~~~~d~~~A~~~  204 (265)
T d1ouva_         151 LYDAGRGTPKDLKKALASYDKACDLK---DSPGCFN-----------------------AGNMYHHGEGATKNFKEALAR  204 (265)
T ss_dssp             HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH-----------------------HHHHHHHTCSSCCCHHHHHHH
T ss_pred             hhccCCCcccccccchhhhhcccccc---ccccccc-----------------------hhhhcccCcccccchhhhhhh
Confidence            7665    345667777777766554   2222211                       1222222    5689999999


Q ss_pred             HHHHHhCCCCCCHhhHHHHHHHHhh----ccchHHHHHHHHHHHHcCCCC
Q 048269          395 VERVMNRGVEVPRFDYNKFLHYYSN----EEGVVMFEEVGKKLREVGLAD  440 (465)
Q Consensus       395 ~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~g~~~  440 (465)
                      |++..+.|   ++..+..|...|.+    ..+.++|.+.+++..+.|..+
T Consensus       205 ~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~~  251 (265)
T d1ouva_         205 YSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG  251 (265)
T ss_dssp             HHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred             Hhhhhccc---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCHH
Confidence            99998876   34555666666655    348899999999999988543

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=3.9e-05  Score=55.55  Aligned_cols=93  Identities=16%  Similarity=0.079  Sum_probs=55.6

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCC---HHHHHHHHHHhhcCCC-CC-HHhHHHHHHHH
Q 048269          113 IALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKL---VVEAKYLILKLSEWIK-PN-EIAYGWLIKGY  187 (465)
Q Consensus       113 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---~~~a~~~~~~m~~~~~-~~-~~~~~~li~~~  187 (465)
                      .++..+...+++++|++.|+...+.+ +.+..++..+..++.+.++   +++|+.+|+++....+ |+ ..++..|..+|
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            45556666667777777777666655 4566666666666665443   3456666666652111 21 23555666666


Q ss_pred             HhcCCHHHHHHHHHHHHHC
Q 048269          188 CDVGDLIEASKIWNLMTDE  206 (465)
Q Consensus       188 ~~~g~~~~a~~~~~~m~~~  206 (465)
                      .+.|++++|++.|+.+.+.
T Consensus        83 ~~~g~~~~A~~~~~~aL~~  101 (122)
T d1nzna_          83 YRLKEYEKALKYVRGLLQT  101 (122)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHHHHHHh
Confidence            6667777777776666664

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=4.1e-06  Score=77.79  Aligned_cols=229  Identities=6%  Similarity=-0.107  Sum_probs=123.2

Q ss_pred             HHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 048269           55 PVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIM  134 (465)
Q Consensus        55 ~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  134 (465)
                      +|.+.|+.++..++.   ....+..+..++...|++++|   ++++...++......+.. ..+.+ ..+..+.+.++..
T Consensus         4 eA~q~~~qA~~l~p~---~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e-~~Lw~-~~y~~~ie~~r~~   75 (497)
T d1ya0a1           4 QSAQYLRQAEVLKAD---MTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVE-QDLWN-HAFKNQITTLQGQ   75 (497)
T ss_dssp             HHHHHHHHHHHHHGG---GTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHH-HHHHH-HHTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCC---CHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHH-HHHHH-HHHHHHHHHHHHh
Confidence            567777777555554   344555566677777777665   666655433111111111 11111 1244566667666


Q ss_pred             hhCCCCCCHHHHHHHHH--HHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcH
Q 048269          135 NDCGCEYSLEMLNKVVK--TLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSI  212 (465)
Q Consensus       135 ~~~~~~~~~~~~~~ll~--~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~  212 (465)
                      .+....++..-....+.  .....+.++.++..+.....-.+++...+..+...+.+.|+.+.|...+.......   ..
T Consensus        76 ~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~  152 (497)
T d1ya0a1          76 AKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQ  152 (497)
T ss_dssp             HSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHHH---HH
T ss_pred             cccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HH
Confidence            65433333322222111  12223445555554444332235566777888888888999999888777765431   23


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048269          213 DVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYG  292 (465)
Q Consensus       213 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~  292 (465)
                      .++..+...+...|++++|...|++..+.  .|.+...|+.+...+...|+..+|...|.+..... +|-+.++..|...
T Consensus       153 ~~~~~LG~l~~~~~~~~~A~~~y~~A~~l--~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~  229 (497)
T d1ya0a1         153 HCLVHLGDIARYRNQTSQAESYYRHAAQL--VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKA  229 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHH
Confidence            56777888899999999999999998876  66578899999999999999999999999988764 4567788888777


Q ss_pred             HHhcC
Q 048269          293 LLARG  297 (465)
Q Consensus       293 ~~~~~  297 (465)
                      +.+..
T Consensus       230 ~~~~~  234 (497)
T d1ya0a1         230 LSKAL  234 (497)
T ss_dssp             HHHHT
T ss_pred             HHHhh
Confidence            76543

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=0.00015  Score=56.01  Aligned_cols=62  Identities=13%  Similarity=-0.112  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048269          145 MLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDE  206 (465)
Q Consensus       145 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  206 (465)
                      +|+.+..+|.+.|++++|+..++....-.|.++.++..+..+|...|++++|...|+...+.
T Consensus        64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  125 (170)
T d1p5qa1          64 SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL  125 (170)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            45556666667777777777776666333556666777777777777777777777776664

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=0.00026  Score=54.68  Aligned_cols=80  Identities=10%  Similarity=-0.107  Sum_probs=57.1

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHH
Q 048269          179 AYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWM  258 (465)
Q Consensus       179 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~  258 (465)
                      +|+.+..+|.+.|++++|+..++...+.. +-+..+|..+..+|...|++++|...|+...+.  .|.+..+...+-.+.
T Consensus        64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~P~n~~~~~~l~~~~  140 (170)
T d1p5qa1          64 SHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQ  140 (170)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence            56667777888888888888888887763 236777888888888888888888888888765  454555555554444


Q ss_pred             Hhc
Q 048269          259 CKR  261 (465)
Q Consensus       259 ~~~  261 (465)
                      .+.
T Consensus       141 ~~~  143 (170)
T d1p5qa1         141 QRI  143 (170)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            333

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=0.00015  Score=52.92  Aligned_cols=56  Identities=9%  Similarity=-0.033  Sum_probs=25.3

Q ss_pred             HHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 048269           80 MVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMN  135 (465)
Q Consensus        80 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  135 (465)
                      +-..+.+.|++++|+..|++..+.++.+..++..+..+|.+.|++++|+..++.+.
T Consensus        10 ~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al   65 (128)
T d1elra_          10 LGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAI   65 (128)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHH
Confidence            33344444444444444444444444444444444444444444444444444443

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=0.00012  Score=53.63  Aligned_cols=103  Identities=11%  Similarity=0.091  Sum_probs=79.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh---cCCCCC----HHhHHHH
Q 048269          111 FKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLS---EWIKPN----EIAYGWL  183 (465)
Q Consensus       111 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~---~~~~~~----~~~~~~l  183 (465)
                      +..+...+.+.|++++|+..|++..+.+ +.+..++..+..+|.+.|++++|+..++++.   ......    ..+|..+
T Consensus         7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l   85 (128)
T d1elra_           7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI   85 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence            4556778889999999999999988875 5678888889999999999999999998876   111111    2467778


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHH
Q 048269          184 IKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVD  216 (465)
Q Consensus       184 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~  216 (465)
                      ...+...+++++|+..|......  .++.....
T Consensus        86 g~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~  116 (128)
T d1elra_          86 GNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLK  116 (128)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhc--CCCHHHHH
Confidence            88899999999999999887764  34444433

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.83  E-value=0.00012  Score=56.51  Aligned_cols=128  Identities=11%  Similarity=-0.035  Sum_probs=75.5

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcC
Q 048269           77 FNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQR  156 (465)
Q Consensus        77 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~  156 (465)
                      +......+.+.|++++|++.|.++.+..           ............       .... +.+...|..+..++.+.
T Consensus        30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~-----------~~~~~~~~~~~~-------~~~~-~~~~~~~~nla~~~~~~   90 (169)
T d1ihga1          30 LKNIGNTFFKSQNWEMAIKKYTKVLRYV-----------EGSRAAAEDADG-------AKLQ-PVALSCVLNIGACKLKM   90 (169)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHH-----------HHHHHHSCHHHH-------GGGH-HHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhh-----------hhhhhhhhhHHH-------HHhC-hhhHHHHHHHHHHHHhh
Confidence            3445666778888888888887765310           000000011000       0000 22344566667777777


Q ss_pred             CCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHh
Q 048269          157 KLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFK  224 (465)
Q Consensus       157 ~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~  224 (465)
                      |++++|+..+++...-.+.+..+|..+..++...|+++.|+..|+...+.. +.+......+..+..+
T Consensus        91 ~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~~~~~~  157 (169)
T d1ihga1          91 SDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQK  157 (169)
T ss_dssp             TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             cccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence            777777777777774446667777777777777777777777777777652 2244555555444433

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.75  E-value=4.6e-05  Score=63.57  Aligned_cols=122  Identities=6%  Similarity=-0.191  Sum_probs=73.9

Q ss_pred             HHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 048269           84 IGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAK  163 (465)
Q Consensus        84 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~  163 (465)
                      ..+.|++++|+..+++..+.++.+...+..+...++..|++++|...|+...+.. +-+...+..+...+...+..+++.
T Consensus         6 aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~-P~~~~~~~~l~~ll~a~~~~~~a~   84 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF-PEYLPGASQLRHLVKAAQARKDFA   84 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhccccHHHH
Confidence            4567888888888888888888888888888888888888888888888887753 223444444444433222222221


Q ss_pred             HHHHHhh-cCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048269          164 YLILKLS-EWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDE  206 (465)
Q Consensus       164 ~~~~~m~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  206 (465)
                      .-...-. .+.+++...+......+...|+.++|...++.+.+.
T Consensus        85 ~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~  128 (264)
T d1zbpa1          85 QGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL  128 (264)
T ss_dssp             TSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence            1111111 112223333444455566667777777777776653

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.75  E-value=0.00031  Score=54.08  Aligned_cols=108  Identities=7%  Similarity=-0.101  Sum_probs=61.3

Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHhhC---CC-CChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 048269           75 ITFNRMVDIIGKSRNIDLFWETLQEMGRR---RL-VNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVV  150 (465)
Q Consensus        75 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll  150 (465)
                      ..+......+.+.|++++|+..|++....   .. .+...                 ......       ....+|+.+.
T Consensus        16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~-----------------~~~~~~-------~~~~~~~Nla   71 (168)
T d1kt1a1          16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKE-----------------SKASES-------FLLAAFLNLA   71 (168)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHH-----------------HHHHHH-------HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhh-----------------hhhcch-------hHHHHHHhHH
Confidence            34555667788888888888888776532   11 11100                 000000       0122344455


Q ss_pred             HHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048269          151 KTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDE  206 (465)
Q Consensus       151 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  206 (465)
                      .+|.+.|++++|+..+++...-.+.+..+|..+..++...|++++|...|....+.
T Consensus        72 ~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l  127 (168)
T d1kt1a1          72 MCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV  127 (168)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred             HHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            56666666666666666665333556666666666666666666666666666654

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.74  E-value=0.00034  Score=54.35  Aligned_cols=71  Identities=11%  Similarity=-0.017  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCcHHH
Q 048269          144 EMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTD-----EGFEPSIDV  214 (465)
Q Consensus       144 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~~  214 (465)
                      ..+..+...+...|++++|+..++++..-.+-+...|..++.+|.+.|+..+|++.|+++.+     .|+.|+..+
T Consensus        68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l  143 (179)
T d2ff4a2          68 LAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  143 (179)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             HHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence            34556667777777777777777777644566777777777777777777777777777643     466666544

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.72  E-value=0.00066  Score=51.17  Aligned_cols=63  Identities=17%  Similarity=-0.125  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048269          144 EMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDE  206 (465)
Q Consensus       144 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  206 (465)
                      .+|+.+..+|.+.|++++|++.+++.....|.+..+|..+..++...|++++|+..|+...+.
T Consensus        68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l  130 (153)
T d2fbna1          68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL  130 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence            356667777777888888888877776444667777778888888888888888888777765

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.72  E-value=0.00042  Score=53.80  Aligned_cols=123  Identities=7%  Similarity=0.000  Sum_probs=83.7

Q ss_pred             HHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCH
Q 048269          149 VVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKD  228 (465)
Q Consensus       149 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~  228 (465)
                      ........|++++|.+.|.+...-.+-+...         .....+-+...-..+..    .....+..+..++.+.|++
T Consensus        17 ~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~---------~~~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~g~~   83 (179)
T d2ff4a2          17 AGVHAAAAGRFEQASRHLSAALREWRGPVLD---------DLRDFQFVEPFATALVE----DKVLAHTAKAEAEIACGRA   83 (179)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCSSTTG---------GGTTSTTHHHHHHHHHH----HHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhCcccccc---------cCcchHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCc
Confidence            3456677888999888888876211111100         00010111111111211    1345677888999999999


Q ss_pred             HHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCCCCHHHH
Q 048269          229 DEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFK-----RGIEADNLTL  286 (465)
Q Consensus       229 ~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~~~~~~~  286 (465)
                      ++|+..++.+...  .|.+...|..++.+|.+.|+.++|++.|+++..     .|+.|+..+-
T Consensus        84 ~~Al~~~~~al~~--~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~  144 (179)
T d2ff4a2          84 SAVIAELEALTFE--HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR  144 (179)
T ss_dssp             HHHHHHHHHHHHH--STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred             hHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHH
Confidence            9999999999876  676888999999999999999999999998743     5888887653

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.70  E-value=0.00066  Score=51.16  Aligned_cols=77  Identities=10%  Similarity=-0.103  Sum_probs=58.8

Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHH
Q 048269          178 IAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDW  257 (465)
Q Consensus       178 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~  257 (465)
                      .+|..+..+|.+.|++++|+..++...+.. +.+..+|..+..++...|++++|...|+...+.  .|.+..+...+-.+
T Consensus        68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l--~P~n~~~~~~l~~~  144 (153)
T d2fbna1          68 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYELC  144 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence            467778888888899999999888888764 346788888888899999999999999888866  45355555544333

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.69  E-value=0.00044  Score=53.23  Aligned_cols=132  Identities=5%  Similarity=-0.111  Sum_probs=92.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhc
Q 048269          111 FKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDV  190 (465)
Q Consensus       111 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~  190 (465)
                      +......+.+.|++++|++.|.+..+..            ............       ....+.+...|..+..++.+.
T Consensus        30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~------------~~~~~~~~~~~~-------~~~~~~~~~~~~nla~~~~~~   90 (169)
T d1ihga1          30 LKNIGNTFFKSQNWEMAIKKYTKVLRYV------------EGSRAAAEDADG-------AKLQPVALSCVLNIGACKLKM   90 (169)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHH------------HHHHHHSCHHHH-------GGGHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhh------------hhhhhhhhhHHH-------HHhChhhHHHHHHHHHHHHhh
Confidence            3445666788899999999888765420            000000011110       001123456788888999999


Q ss_pred             CCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCCh
Q 048269          191 GDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKI  264 (465)
Q Consensus       191 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~  264 (465)
                      |++++|+..+....+.. +.+...|..+..++.+.|++++|++.|+...+.  .|.+......+..+..+....
T Consensus        91 ~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l--~p~n~~~~~~l~~~~~~l~~~  161 (169)
T d1ihga1          91 SDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVKQKIKAQ  161 (169)
T ss_dssp             TCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHH
T ss_pred             cccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999864 447889999999999999999999999999976  565777777776665544433

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.60  E-value=0.00067  Score=52.08  Aligned_cols=142  Identities=10%  Similarity=-0.053  Sum_probs=97.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCC-HHHHHHHHHHhhcCCCCCHHhHHHHHHHHH
Q 048269          110 TFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKL-VVEAKYLILKLSEWIKPNEIAYGWLIKGYC  188 (465)
Q Consensus       110 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~li~~~~  188 (465)
                      .+......+.+.|++.+|+..|+.....               +-..-. ..........+      ....|+.+..+|.
T Consensus        17 ~~~e~G~~~~~~~~~~~A~~~Y~~al~~---------------~~~~~~~~~~~~~~~~~~------~~~~~~Nla~~~~   75 (168)
T d1kt1a1          17 IVKEKGTVYFKGGKYVQAVIQYGKIVSW---------------LEMEYGLSEKESKASESF------LLAAFLNLAMCYL   75 (168)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------HTTCCSCCHHHHHHHHHH------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH---------------HHHhhccchhhhhhcchh------HHHHHHhHHHHHH
Confidence            4556677888899999999998876541               000000 00111111111      1346777888999


Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChH-HH
Q 048269          189 DVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKIS-QA  267 (465)
Q Consensus       189 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~-~a  267 (465)
                      +.|++++|+..++...+.. +.+..+|..+..++...|++++|.+.|+.....  .|.+......+-....+.+... ..
T Consensus        76 ~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l--~P~n~~~~~~l~~~~~~~~~~~e~~  152 (168)
T d1kt1a1          76 KLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQIFMCQKKAKEHNERD  152 (168)
T ss_dssp             HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             Hhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHhHHHHH
Confidence            9999999999999999864 457889999999999999999999999999875  6656666666666555554333 34


Q ss_pred             HHHHHHHH
Q 048269          268 YTMLEEMF  275 (465)
Q Consensus       268 ~~~~~~m~  275 (465)
                      .+++..|.
T Consensus       153 kk~~~~~f  160 (168)
T d1kt1a1         153 RRTYANMF  160 (168)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            44544443

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.52  E-value=7.8e-05  Score=62.11  Aligned_cols=123  Identities=5%  Similarity=-0.083  Sum_probs=67.9

Q ss_pred             HHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHH
Q 048269          118 LAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEAS  197 (465)
Q Consensus       118 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~  197 (465)
                      ..+.|++++|+..+++..+.. +.|...+..+...++..|++++|.+.|+....-.+-+...+..+...+...+..+++.
T Consensus         6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~   84 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFA   84 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHH
Confidence            345677777777777777764 5567777777777777777777777777766322333444444444333322222221


Q ss_pred             HHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048269          198 KIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVK  241 (465)
Q Consensus       198 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  241 (465)
                      .-.......+-+++...+......+...|+.++|.+.++++.+.
T Consensus        85 ~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~  128 (264)
T d1zbpa1          85 QGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL  128 (264)
T ss_dssp             TSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence            11111000111122333444455566677777777777776654

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.47  E-value=0.00031  Score=52.47  Aligned_cols=70  Identities=6%  Similarity=-0.050  Sum_probs=40.1

Q ss_pred             HhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcC----------CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 048269           85 GKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVR----------ELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLC  154 (465)
Q Consensus        85 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~  154 (465)
                      -+.+.+++|.+.|+...+.++.+..++..+..++...+          .+++|+..|+...+.. +.+..+|..+..+|.
T Consensus         8 ~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~y~   86 (145)
T d1zu2a1           8 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYT   86 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHHHH
Confidence            34455677777777777777666666666666665433          3345555555555543 334455555555544


Q ss_pred             c
Q 048269          155 Q  155 (465)
Q Consensus       155 ~  155 (465)
                      .
T Consensus        87 ~   87 (145)
T d1zu2a1          87 S   87 (145)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=0.00036  Score=64.26  Aligned_cols=135  Identities=10%  Similarity=-0.054  Sum_probs=75.3

Q ss_pred             cCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 048269           87 SRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLI  166 (465)
Q Consensus        87 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~  166 (465)
                      .+.++.++..+....+..+.+...+..+...+.+.|+.+.|...+.......   ...++..+...+...|++++|+..|
T Consensus        99 ~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y  175 (497)
T d1ya0a1          99 SGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYY  175 (497)
T ss_dssp             HHHHHHHHHHHTC-------------------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHH
Confidence            4555666655555544445555667777777888888888887776655421   1245666778888888888888888


Q ss_pred             HHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhc
Q 048269          167 LKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKI  225 (465)
Q Consensus       167 ~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~  225 (465)
                      ++...-.|.+..+|+.|...+...|+..+|...|.+..... +|-..++..|...+.+.
T Consensus       176 ~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~~  233 (497)
T d1ya0a1         176 RHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSKA  233 (497)
T ss_dssp             HHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHh
Confidence            88875456777888888888888888888888888887764 46677777777776554

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.41  E-value=0.00037  Score=52.06  Aligned_cols=73  Identities=8%  Similarity=-0.021  Sum_probs=46.8

Q ss_pred             HHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcC----------CCHHHHHHHHHHhhcCCCCCHHhHHHHHHHH
Q 048269          118 LAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQR----------KLVVEAKYLILKLSEWIKPNEIAYGWLIKGY  187 (465)
Q Consensus       118 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----------~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~  187 (465)
                      |-+.+.+++|+..|+...+.. |.+..++..+..++...          +.+++|+..|++...-.|.+..+|..+..+|
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y   85 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAY   85 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHH
Confidence            345566888888888888765 66777777777776643          3345666666666533355566666666666


Q ss_pred             HhcC
Q 048269          188 CDVG  191 (465)
Q Consensus       188 ~~~g  191 (465)
                      ...|
T Consensus        86 ~~~g   89 (145)
T d1zu2a1          86 TSFA   89 (145)
T ss_dssp             HHHH
T ss_pred             HHcc
Confidence            5443

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.04  E-value=0.0097  Score=44.57  Aligned_cols=61  Identities=15%  Similarity=0.080  Sum_probs=29.2

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCc-----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048269          179 AYGWLIKGYCDVGDLIEASKIWNLMTDE-----GFEPS-----IDVVDKMIETFFKINKDDEAMKVFQMMR  239 (465)
Q Consensus       179 ~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~  239 (465)
                      .|+.+..+|.+.|++++|...+++..+.     ...++     ...++.+..+|...|++++|++.|++..
T Consensus        57 ~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al  127 (156)
T d2hr2a1          57 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV  127 (156)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555555555555555555554431     01111     1234445555555566666655555543

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=96.92  E-value=0.011  Score=44.28  Aligned_cols=89  Identities=10%  Similarity=-0.115  Sum_probs=53.8

Q ss_pred             HHHhcCCHHHHHHHHHHhhhCCC-CC----------CHHHHHHHHHHHHcCCCHHHHHHHHHHhhc------CCCCC---
Q 048269          117 TLAEVRELKKMVNFFHIMNDCGC-EY----------SLEMLNKVVKTLCQRKLVVEAKYLILKLSE------WIKPN---  176 (465)
Q Consensus       117 ~~~~~~~~~~a~~~~~~~~~~~~-~~----------~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~------~~~~~---  176 (465)
                      .+.+.|++++|+..|++..+... .|          ...+|+.+..+|.+.|++++|.+.+++...      ...++   
T Consensus        18 ~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~   97 (156)
T d2hr2a1          18 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGK   97 (156)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccc
Confidence            34445566666666655544110 01          134566677777777777777777666541      11111   


Q ss_pred             --HHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048269          177 --EIAYGWLIKGYCDVGDLIEASKIWNLMTD  205 (465)
Q Consensus       177 --~~~~~~li~~~~~~g~~~~a~~~~~~m~~  205 (465)
                        ...+..+..+|...|++++|+..|++..+
T Consensus        98 ~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~  128 (156)
T d2hr2a1          98 LWISAVYSRALALDGLGRGAEAMPEFKKVVE  128 (156)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence              23466677888888898888888888764

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.86  E-value=0.0033  Score=42.63  Aligned_cols=66  Identities=5%  Similarity=-0.075  Sum_probs=38.2

Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCC------CC-hHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 048269           73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRL------VN-DKTFKIALMTLAEVRELKKMVNFFHIMNDCG  138 (465)
Q Consensus        73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~------~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  138 (465)
                      +...+-.+...+.+.|++++|+..|++..+...      ++ ..++..+..++.+.|++++|+..++++.+..
T Consensus         4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~   76 (95)
T d1tjca_           4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD   76 (95)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC
Confidence            344445566666666666666666666543211      11 3456666666666666666666666666543

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.70  E-value=0.0078  Score=40.64  Aligned_cols=77  Identities=13%  Similarity=-0.048  Sum_probs=47.4

Q ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-----CCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhH
Q 048269          107 NDKTFKIALMTLAEVRELKKMVNFFHIMNDCG-----CEY-SLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAY  180 (465)
Q Consensus       107 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~  180 (465)
                      +...+..+...+.+.|++++|+..|++..+..     ..+ ...+++.+..++.+.|++++|+..+++...-.|-+..++
T Consensus         4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~   83 (95)
T d1tjca_           4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN   83 (95)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHH
Confidence            44555667777777888888877777765421     111 245566677777777777777777777663224444444


Q ss_pred             HHH
Q 048269          181 GWL  183 (465)
Q Consensus       181 ~~l  183 (465)
                      +.+
T Consensus        84 ~Nl   86 (95)
T d1tjca_          84 GNL   86 (95)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=95.24  E-value=0.31  Score=34.65  Aligned_cols=47  Identities=17%  Similarity=0.128  Sum_probs=23.0

Q ss_pred             CHHHHHHHHHHhcC-CCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 048269          298 RLREAYKVVEEIEK-PDISLYHGLIKGLLR----LRRAREATQVFREMIKRG  344 (465)
Q Consensus       298 ~~~~a~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~  344 (465)
                      +.++|.+.|+...+ -++.....|...|..    ..+.++|.++|+...+.|
T Consensus        74 d~~~A~~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_          74 DLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  125 (133)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             hhHHHHHHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence            34445555544433 333334444444433    245666666666665554

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=95.01  E-value=0.36  Score=34.24  Aligned_cols=80  Identities=9%  Similarity=-0.078  Sum_probs=35.4

Q ss_pred             CHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHh----cCC
Q 048269          192 DLIEASKIWNLMTDEGFEPSIDVVDKMIETFFK----INKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCK----RGK  263 (465)
Q Consensus       192 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~----~~~  263 (465)
                      +.++|++++++..+.|   +......|...|..    ..+.++|.++|+...+.|    ++.....|...|..    ..+
T Consensus        38 ~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g----~~~a~~~Lg~~y~~G~gv~~d  110 (133)
T d1klxa_          38 NKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN----DQDGCLILGYKQYAGKGVVKN  110 (133)
T ss_dssp             CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCC
T ss_pred             CHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC----cchHHHHHHHHHHcCCccCCC
Confidence            4445555555544443   22333333333332    234455555555555443    22233334444433    234


Q ss_pred             hHHHHHHHHHHHHCC
Q 048269          264 ISQAYTMLEEMFKRG  278 (465)
Q Consensus       264 ~~~a~~~~~~m~~~~  278 (465)
                      .++|.++|++..+.|
T Consensus       111 ~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_         111 EKQAVKTFEKACRLG  125 (133)
T ss_dssp             HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHCC
Confidence            555555555555544

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=94.04  E-value=0.57  Score=32.35  Aligned_cols=66  Identities=11%  Similarity=-0.084  Sum_probs=55.5

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhccchHHHHHHHHHHHHcCC
Q 048269          372 VNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNEEGVVMFEEVGKKLREVGL  438 (465)
Q Consensus       372 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~  438 (465)
                      ...++..++.+...|+-+.-.++++.+.+. -+|++...-.+..+|.+-|+..++.+++.+..+.|.
T Consensus        86 se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~  151 (161)
T d1wy6a1          86 NEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE  151 (161)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence            344555666779999999999999998774 478889999999999999999999999999999985

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=93.80  E-value=0.64  Score=32.10  Aligned_cols=62  Identities=18%  Similarity=0.196  Sum_probs=25.9

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 048269          216 DKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGI  279 (465)
Q Consensus       216 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~  279 (465)
                      ...++.....|+-++-.++++.+.+.+ .+ ++...-.+..+|.+.|...++.+++.+.-+.|+
T Consensus        90 dlALd~lv~~~kkd~Ld~i~~~l~kn~-~i-~~~~llkia~A~kkig~~re~nell~~ACe~G~  151 (161)
T d1wy6a1          90 NKALDILVIQGKRDKLEEIGREILKNN-EV-SASILVAIANALRRVGDERDATTLLIEACKKGE  151 (161)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHC--C-CS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHhcC-CC-CHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence            333444444444444444444433321 22 334444444444444444444444444444443

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.43  E-value=0.71  Score=31.97  Aligned_cols=66  Identities=8%  Similarity=-0.055  Sum_probs=42.3

Q ss_pred             CCHHhHHHHHHHHHhcC---ChhHHHHHHHHHhhCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 048269           72 HNSITFNRMVDIIGKSR---NIDLFWETLQEMGRRRLVN-DKTFKIALMTLAEVRELKKMVNFFHIMNDC  137 (465)
Q Consensus        72 ~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  137 (465)
                      ++..+--...-++.+..   +.++++.++++..+.++.. ...+-.+..+|.+.|++++|.+.++.+.+.
T Consensus        33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i  102 (124)
T d2pqrb1          33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  102 (124)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence            45555555555665553   3456777777777655433 245566666777778888888877777775

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.30  E-value=1.5  Score=28.55  Aligned_cols=61  Identities=13%  Similarity=0.151  Sum_probs=39.7

Q ss_pred             ChhHHHHHHHHHhhCCC-CChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 048269           89 NIDLFWETLQEMGRRRL-VNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVV  150 (465)
Q Consensus        89 ~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll  150 (465)
                      +.-++.+-++.+...+. |++.+..+.+++|.+.+++..|+++|+.++... .++...|..++
T Consensus        21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~-~~~k~~y~yil   82 (105)
T d1v54e_          21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI   82 (105)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCcHHHHHHHH
Confidence            34456666666666665 677777777888888888888888777776532 23344555544

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.70  E-value=3.5  Score=28.34  Aligned_cols=64  Identities=13%  Similarity=-0.091  Sum_probs=29.2

Q ss_pred             CChHHHHHHHHHHHhcCC---HHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHhh
Q 048269          106 VNDKTFKIALMTLAEVRE---LKKMVNFFHIMNDCGCEYS-LEMLNKVVKTLCQRKLVVEAKYLILKLS  170 (465)
Q Consensus       106 ~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~  170 (465)
                      ++..+-.....++++..+   .++++.+|+.+.+.+ +.+ ...+-.|.-+|.+.|++++|.+.++.+.
T Consensus        33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L  100 (124)
T d2pqrb1          33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF  100 (124)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            444444444444444322   345555555555432 112 2333344444555555555555555554

>d1bpoa1 a.118.1.4 (A:331-487) Clathrin heavy-chain linker domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy-chain linker domain
domain: Clathrin heavy-chain linker domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=85.17  E-value=4.9  Score=28.62  Aligned_cols=98  Identities=9%  Similarity=0.023  Sum_probs=48.6

Q ss_pred             CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHH
Q 048269          137 CGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVD  216 (465)
Q Consensus       137 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~  216 (465)
                      .|++--...|..-.+.+...|++.+|-++-.....|+-.+..|.+.+-..-...|+..-.+.+|..+.+.| ..|..--.
T Consensus        25 ~~LpGAd~l~~~~F~~lf~~g~y~eAA~~aA~sP~giLRt~~Ti~rFk~~~~~pGq~spLL~YF~~Ll~~~-~LN~~ESl  103 (157)
T d1bpoa1          25 NNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG-QLNKYESL  103 (157)
T ss_dssp             TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS-CCCHHHHH
T ss_pred             cCCCChHHHHHHHHHHHHHcCCHHHHHHHHHhCCcccccCHHHHHHHHcCCCCCCCCCHHHHHHHHHHhcC-CCchHHhH
Confidence            33333444444444445555555555555554445555555555444443334455555555555555544 23444444


Q ss_pred             HHHHHHHhcCCHHHHHHHH
Q 048269          217 KMIETFFKINKDDEAMKVF  235 (465)
Q Consensus       217 ~li~~~~~~g~~~~A~~~~  235 (465)
                      .+++.-...|+.+...+.+
T Consensus       104 El~r~vL~q~r~~lve~Wl  122 (157)
T d1bpoa1         104 ELCRPVLQQGRKQLLEKWL  122 (157)
T ss_dssp             HHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHhcCcHHHHHHHH
Confidence            5555555555555555443

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=83.32  E-value=4.2  Score=26.40  Aligned_cols=63  Identities=5%  Similarity=-0.037  Sum_probs=49.8

Q ss_pred             CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhccchHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 048269          387 KSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNEEGVVMFEEVGKKLREVGLADLADIFQRYGK  450 (465)
Q Consensus       387 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~~~~  450 (465)
                      +.-++.+-++.+....+.|++.+..+.+++|.+.+++..|..+++.++.+--. ...+|..+.+
T Consensus        21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~~-~k~~y~yilq   83 (105)
T d1v54e_          21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP-HKEIYPYVIQ   83 (105)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT-CTTHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC-cHHHHHHHHH
Confidence            55567777777777788899999999999999999999999999998876422 2557776654

>d2nsza1 a.118.1.14 (A:322-450) Programmed cell death 4, PDCD4 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: Programmed cell death 4, PDCD4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.99  E-value=4  Score=28.35  Aligned_cols=78  Identities=9%  Similarity=0.129  Sum_probs=54.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhccch--HHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 048269          375 DTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNEEGV--VMFEEVGKKLREVGLADLADIFQRYGKKM  452 (465)
Q Consensus       375 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~--~~a~~~~~~~~~~g~~~~~~~~~~~~~~~  452 (465)
                      ...++.-|...|+.++|.+.++++...... ...+...+..+.-+.+..  +.+..++..+...|+.....+...+.++.
T Consensus        10 ~~~ll~EY~~~~D~~Ea~~~l~eL~~p~~~-~e~V~~~i~~ale~~~~~r~~~~~~Ll~~L~~~~~is~~~i~~Gf~~~l   88 (129)
T d2nsza1          10 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIY   88 (129)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHcCCchhh-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence            467788889999999999999998521111 223444555555554433  44678999999999888888887777654


Q ss_pred             h
Q 048269          453 A  453 (465)
Q Consensus       453 ~  453 (465)
                      .
T Consensus        89 ~   89 (129)
T d2nsza1          89 N   89 (129)
T ss_dssp             H
T ss_pred             h
Confidence            3