Citrus Sinensis ID: 048310

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100--
Protein Sequence
MKSLVSQRQFFHSHRAQPMAWEQVVSDRDSEDEVDDDVADLEDRRMLDDFVDVTKDEKQMMHMWNSFVRKQRVLADGHIPWACEAFTKLYGHDLVQAPALKW
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHcccccccccHHHHcccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcHHHHccccccc
Coil and Loop (DISEMBL)
mkslvsqrqffhshraqpmaweqvvsdrdsedevdddvadledrrmldDFVDVTKDEKQMMHMWNSFVRKQRVLADGHIPWACEAFTKLYghdlvqapalkw
Flexible Loop (DISEMBL)
mkslvsqrqffhshraqpmaweqvvsdrdsedevdddvadledrrmldDFVDVTKDEKQMMHMWNSFVRKQRVLADGHIPWACEAFTKLYGHDLVQAPALKW
Low Complexity Region (SEG)
MKSLVSQRQFFHSHRAQPMAWEQvvsdrdsedevdddvadledrrMLDDFVDVTKDEKQMMHMWNSFVRKQRVLADGHIPWACEAFTKLYGHDLVQAPALKW
Disordered region (IsUnstruct)
**********************************************LDDFVDVTKDEKQMMHMWNSFVRKQRVLADGHIPWACEAFTKLYGHDLVQ******
Disordered Region (DISOPRED)
***LVSQRQFFHSHRAQPM**************VDDDVADLEDRRMLDDFVDVTKDEKQMMHMWNSFVRKQRVLADGHIPWACEAFTKLYGHDLVQAPALK*
Disordered Region (DISEMBL)
MKSLVSQRQFFHSHRAQPMAW****************VADLEDRRMLDDFVDVTKDEKQMMHMWNSFVRKQRVLADGHIPWACEAFTKLYGHDLVQAPALKW
Disordered Region (DISPRO)
MKSLVSQRQFFHSHRAQPMAWEQVVSDRDSEDEVDDDVADLEDRRMLDDFVDVTKDEKQMMHMWNSFVRKQRVLADGHIPWACEAFTKLYGHDLVQAPALKW
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKSLVSQRQFFHSHRAQPMAWEQVVSDRDSEDEVDDDVADLEDRRMLDDFVDVTKDEKQMMHMWNSFVRKQRVLADGHIPWACEAFTKLYGHDLVQAPALKW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	102	2.2.26 [Sep-21-2011]
Q8L6Y4	631	Polycomb group protein EM	yes	no	0.990	0.160	0.831	8e-37
Q8W5B1	440	Polycomb group protein VE	no	no	0.970	0.225	0.727	1e-29
Q9ZNT9	755	Polycomb group protein FE	no	no	0.931	0.125	0.505	7e-25
Q6DC03	657	Polycomb protein suz12-A	yes	no	0.852	0.132	0.325	7e-08
Q0VA03	700	Polycomb protein suz12 OS	yes	no	0.862	0.125	0.333	7e-07
Q80U70	741	Polycomb protein Suz12 OS	yes	no	0.852	0.117	0.314	8e-07
Q15022	739	Polycomb protein SUZ12 OS	yes	no	0.852	0.117	0.314	8e-07
Q9NJG9	900	Polycomb protein Su(z)12	yes	no	0.852	0.096	0.314	1e-06
B0R1D5	682	Polycomb protein suz12-B	no	no	0.852	0.127	0.292	6e-06

>sp|Q8L6Y4|EMF2_ARATH Polycomb group protein EMBRYONIC FLOWER 2 OS=Arabidopsis thaliana GN=EMF2 PE=1 SV=2

 Score =  152 bits (383), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 84/101 (83%), Positives = 93/101 (92%)

Query: 2   KSLVSQRQFFHSHRAQPMAWEQVVSDRDSEDEVDDDVADLEDRRMLDDFVDVTKDEKQMM 61
           +SL+ +RQFFHSHRAQPMA EQV+SDRDSEDEVDDDVAD EDRRMLDDFVDVTKDEKQMM
Sbjct: 499 RSLLQKRQFFHSHRAQPMALEQVLSDRDSEDEVDDDVADFEDRRMLDDFVDVTKDEKQMM 558

Query: 62  HMWNSFVRKQRVLADGHIPWACEAFTKLYGHDLVQAPALKW 102
           HMWNSFVRKQRVLADGHIPWACEAF++L+G  +V+ P L W
Sbjct: 559 HMWNSFVRKQRVLADGHIPWACEAFSRLHGPIMVRTPHLIW 599

Polycomb group (PcG) protein. Involved in flowering processes by repressing unknown target genes and preventing reproductive development. Participates in polycomb group (PcG) protein complex-mediated (probably in complex with EMF1) silencing of the flower homeotic genes AGAMOUS (AG), PISTILLATA (PI), and APETALA3 (AP3), as well as of some regulatory genes such as ABSCISIC ACID INSENSITIVE3 (ABI3), LONG VEGETATIVE PHASE1 (LOV1), and FLOWERING LOCUS C (FLC) during vegetative development, by mediating trimethylation of histone 3 lysine 27 on the AG chromatin (H3K27me3). PcG proteins act by forming multiprotein complexes, which are required to maintain the transcriptionally repressive state of homeotic genes throughout development. PcG proteins are not required to initiate repression, but to maintain it during later stages of development. They probably act via the methylation of histones, rendering chromatin heritably changed in its expressibility.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8W5B1|VRN2_ARATH Polycomb group protein VERNALIZATION 2 OS=Arabidopsis thaliana GN=VRN2 PE=1 SV=2

 Score =  128 bits (322), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 72/99 (72%), Positives = 83/99 (83%)

Query: 4   LVSQRQFFHSHRAQPMAWEQVVSDRDSEDEVDDDVADLEDRRMLDDFVDVTKDEKQMMHM 63
           L+ +RQF+HSHR QPMA EQV+SDRDSEDEVDDDVAD EDR+MLDDFVDV KDEKQ MH+
Sbjct: 263 LLQKRQFYHSHRVQPMALEQVMSDRDSEDEVDDDVADFEDRQMLDDFVDVNKDEKQFMHL 322

Query: 64  WNSFVRKQRVLADGHIPWACEAFTKLYGHDLVQAPALKW 102
           WNSFVRKQRV+ADGHI WACE F++ Y  +L    +L W
Sbjct: 323 WNSFVRKQRVIADGHISWACEVFSRFYEKELHCYSSLFW 361

Polycomb group (PcG) protein. Plays a central role in vernalization by maintaining repressed the homeotic gene FLC, a floral repressor, after a cold treatment. PcG proteins act by forming multiprotein complexes, which are required to maintain the transcriptionally repressive state of homeotic genes throughout development. PcG proteins are not required to initiate repression, but to maintain it during later stages of development. They probably act via the methylation of histones, rendering chromatin heritably changed in its expressibility.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZNT9|FIS2_ARATH Polycomb group protein FERTILIZATION-INDEPENDENT SEED 2 OS=Arabidopsis thaliana GN=FIS2 PE=1 SV=3

 Score =  112 bits (280), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 48/95 (50%), Positives = 69/95 (72%)

Query: 8   RQFFHSHRAQPMAWEQVVSDRDSEDEVDDDVADLEDRRMLDDFVDVTKDEKQMMHMWNSF 67
           RQF+HS   QP+ +EQV+S+ DSE+E DD   D+ +R  L+  V V+K+EK+ M++WN F
Sbjct: 606 RQFYHSQTMQPITFEQVMSNEDSENETDDYALDISERLRLERLVGVSKEEKRYMYLWNIF 665

Query: 68  VRKQRVLADGHIPWACEAFTKLYGHDLVQAPALKW 102
           VRKQRV+ADGH+PWACE F KL+  ++  + +  W
Sbjct: 666 VRKQRVIADGHVPWACEEFAKLHKEEMKNSSSFDW 700

Polycomb group (PcG) protein. PcG proteins act by forming multiprotein complexes, which are required to maintain the transcriptionally repressive state of homeotic genes throughout development. PcG proteins are not required to initiate repression, but to maintain it during later stages of development. They probably act via the methylation of histones, rendering chromatin heritably changed in its expressibility. Required to prevent the proliferation of the central cell by repressing unknown target genes before fertilization. Regulates the anteroposterior organization of the endosperm.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6DC03|SZ12A_DANRE Polycomb protein suz12-A OS=Danio rerio GN=suz12a PE=2 SV=1

 Score = 55.8 bits (133), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 2/89 (2%)

Query: 8   RQFFHSHRAQPMAWEQVVSDRDSEDEVDDDVADLEDRRMLDDFVDVTKDEKQMMHMWNSF 67
           R +FHS    P+  +++  + DSEDE D D    +    +++F DV + EK++M +WN  
Sbjct: 528 RLYFHSDSCTPLRPQEM--EVDSEDERDPDWLREKTAMQIEEFTDVNEGEKEIMKLWNLL 585

Query: 68  VRKQRVLADGHIPWACEAFTKLYGHDLVQ 96
           V K   +AD  +  AC +F + +G  +V+
Sbjct: 586 VMKHGFIADNQMNQACMSFVEQHGTIMVE 614

Polycomb group (PcG) protein. Component of the prc2/eed-ezh2 complex, which methylates 'Lys-9' and 'Lys-27' of histone H3, leading to transcriptional repression of the affected target gene.

Danio rerio (taxid: 7955)

>sp|Q0VA03|SUZ12_XENTR Polycomb protein suz12 OS=Xenopus tropicalis GN=suz12 PE=2 SV=1

 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 2/90 (2%)

Query: 7   QRQFFHSHRAQPMAWEQVVSDRDSEDEVDDDVADLEDRRMLDDFVDVTKDEKQMMHMWNS 66
            R +FHS    P+  +++  D DSEDE D +    +    +++F DV + EK++M MWN 
Sbjct: 519 NRLYFHSDTCLPLRPQEM--DVDSEDEKDPEWLREKTITQIEEFSDVNEGEKEVMKMWNL 576

Query: 67  FVRKQRVLADGHIPWACEAFTKLYGHDLVQ 96
            V K   +AD  +   C  F   YG  ++Q
Sbjct: 577 HVMKHGFIADNQMNHGCMLFVDNYGPQIIQ 606

Polycomb group (PcG) protein. Component of the prc2/eed-ezh2 complex, which methylates 'Lys-9' (H3K9me) and 'Lys-27' (H3K27me) of histone H3, leading to transcriptional repression of the affected target gene.

Xenopus tropicalis (taxid: 8364)

>sp|Q80U70|SUZ12_MOUSE Polycomb protein Suz12 OS=Mus musculus GN=Suz12 PE=1 SV=2

 Score = 52.4 bits (124), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 2/89 (2%)

Query: 8   RQFFHSHRAQPMAWEQVVSDRDSEDEVDDDVADLEDRRMLDDFVDVTKDEKQMMHMWNSF 67
           R +FHS    P+  +++  + DSEDE D +    +    +++F DV + EK++M +WN  
Sbjct: 565 RLYFHSDTCLPLRPQEM--EVDSEDEKDPEWLREKTITQIEEFSDVNEGEKEVMKLWNLH 622

Query: 68  VRKQRVLADGHIPWACEAFTKLYGHDLVQ 96
           V K   +AD  +  AC  F + YG  +++
Sbjct: 623 VMKHGFIADNQMNHACMLFVENYGQKIIK 651

Polycomb group (PcG) protein. Component of the PRC2/EED-EZH2 complex, which methylates 'Lys-9' (H3K9me) and 'Lys-27' (H3K27me) of histone H3, leading to transcriptional repression of the affected target gene. The PRC2/EED-EZH2 complex may also serve as a recruiting platform for DNA methyltransferases, thereby linking two epigenetic repression systems (By similarity). Genes repressed by the PRC2/EED-EZH2 complex include HOXA7, HOXB6 and HOXC8.

Mus musculus (taxid: 10090)

>sp|Q15022|SUZ12_HUMAN Polycomb protein SUZ12 OS=Homo sapiens GN=SUZ12 PE=1 SV=3

 Score = 52.4 bits (124), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 2/89 (2%)

Query: 8   RQFFHSHRAQPMAWEQVVSDRDSEDEVDDDVADLEDRRMLDDFVDVTKDEKQMMHMWNSF 67
           R +FHS    P+  +++  + DSEDE D +    +    +++F DV + EK++M +WN  
Sbjct: 563 RLYFHSDTCLPLRPQEM--EVDSEDEKDPEWLREKTITQIEEFSDVNEGEKEVMKLWNLH 620

Query: 68  VRKQRVLADGHIPWACEAFTKLYGHDLVQ 96
           V K   +AD  +  AC  F + YG  +++
Sbjct: 621 VMKHGFIADNQMNHACMLFVENYGQKIIK 649

Polycomb group (PcG) protein. Component of the PRC2/EED-EZH2 complex, which methylates 'Lys-9' (H3K9me) and 'Lys-27' (H3K27me) of histone H3, leading to transcriptional repression of the affected target gene. The PRC2/EED-EZH2 complex may also serve as a recruiting platform for DNA methyltransferases, thereby linking two epigenetic repression systems. Genes repressed by the PRC2/EED-EZH2 complex include HOXC8, HOXA9, MYT1 and CDKN2A.

Homo sapiens (taxid: 9606)

>sp|Q9NJG9|SUZ12_DROME Polycomb protein Su(z)12 OS=Drosophila melanogaster GN=Su(z)12 PE=1 SV=1

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 2/89 (2%)

Query: 8   RQFFHSHRAQPMAWEQVVSDRDSEDEVDDDVADLEDRRMLDDFVDVTKDEKQMMHMWNSF 67
           R + H+    P+  +++  D DSE E D      +  +M+D+F DV + EK++M +WN  
Sbjct: 527 RLYHHTETCLPVHPKEL--DIDSEGESDPLWLRQKTIQMIDEFSDVNEGEKELMKLWNLH 584

Query: 68  VRKQRVLADGHIPWACEAFTKLYGHDLVQ 96
           V +   + D  +P ACE F    G ++V+
Sbjct: 585 VMRHGFVGDCQLPIACEMFLDAKGTEIVR 613

Polycomb group (PcG) protein. While PcG proteins are generally required to maintain the transcriptionally repressive state of homeotic genes throughout development, this protein is specifically required during the first 6 hours of embryogenesis to establish the repressed state. Component of the Esc/E(z) complex, which methylates 'Lys-9' (H3K9me) and 'Lys-27' (H3K27me) of histone H3, leading to transcriptional repression of the affected target gene. The Esc/E(z) complex is necessary but not sufficient for the repression of homeotic target genes, suggesting that the recruitment of the distinct PRC1 complex is also required.

Drosophila melanogaster (taxid: 7227)

>sp|B0R1D5|SZ12B_DANRE Polycomb protein suz12-B OS=Danio rerio GN=suz12b PE=2 SV=1

 Score = 49.7 bits (117), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 2/89 (2%)

Query: 8   RQFFHSHRAQPMAWEQVVSDRDSEDEVDDDVADLEDRRMLDDFVDVTKDEKQMMHMWNSF 67
           R +FHS    P+  +++  + DSEDE D +    +    +++F DV + EK++M +WN  
Sbjct: 523 RLYFHSDSCMPLRPQEM--EVDSEDERDPEWLQEKTTTQIEEFTDVNEGEKEVMKLWNLH 580

Query: 68  VRKQRVLADGHIPWACEAFTKLYGHDLVQ 96
           V K   +AD  +  A   F ++ G  +++
Sbjct: 581 VMKNGFIADNQMSQASMLFVEICGPHIIR 609

Polycomb group (PcG) protein. Component of the prc2/eed-ezh2 complex, which methylates 'Lys-9' and 'Lys-27' of histone H3, leading to transcriptional repression of the affected target gene.

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	102
374306298	679	EMF2-like protein, partial [Aquilegia co	0.990	0.148	0.821	8e-47
90102224	699	embryonic flower 2 [Yucca filamentosa]	0.990	0.144	0.831	3e-45
296084642	712	unnamed protein product [Vitis vinifera]	0.990	0.141	0.821	3e-45
359473880	1097	PREDICTED: polycomb group protein EMBRYO	0.990	0.092	0.821	6e-45
90102226	708	polycomb group protein EMF2 [Asparagus o	0.990	0.142	0.831	6e-45
162461708	626	VEF family protein [Zea mays] gi|2956911	0.990	0.161	0.801	2e-44
147773657	233	hypothetical protein VITISV_029948 [Viti	0.990	0.433	0.821	2e-44
85062577	626	EMF-like [Zea mays]	0.990	0.161	0.792	7e-44
125605128	546	hypothetical protein OsJ_28786 [Oryza sa	0.990	0.184	0.811	9e-44
51091709	604	putative VEF family protein [Oryza sativ	0.990	0.167	0.811	9e-44

>gi|374306298|gb|AEZ06398.1| EMF2-like protein, partial [Aquilegia coerulea]

 Score =  190 bits (483), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 83/101 (82%), Positives = 94/101 (93%)

Query: 2   KSLVSQRQFFHSHRAQPMAWEQVVSDRDSEDEVDDDVADLEDRRMLDDFVDVTKDEKQMM 61
           ++L+ +RQFFHSHRAQPMA EQV+SDRDSEDEVDDD+AD EDRRMLDDFVDVTKDEK+ M
Sbjct: 522 RTLLQKRQFFHSHRAQPMALEQVLSDRDSEDEVDDDIADFEDRRMLDDFVDVTKDEKKTM 581

Query: 62  HMWNSFVRKQRVLADGHIPWACEAFTKLYGHDLVQAPALKW 102
           H+WNSFVRKQRVLADGHIPWACEAFT+ +G +LVQAPAL W
Sbjct: 582 HLWNSFVRKQRVLADGHIPWACEAFTRQHGRELVQAPALFW 622

Source: Aquilegia coerulea

Species: Aquilegia coerulea

Genus: Aquilegia

Family: Ranunculaceae

Order: Ranunculales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|90102224|gb|ABD85300.1| embryonic flower 2 [Yucca filamentosa]

 Score =  185 bits (470), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 84/101 (83%), Positives = 94/101 (93%)

Query: 2   KSLVSQRQFFHSHRAQPMAWEQVVSDRDSEDEVDDDVADLEDRRMLDDFVDVTKDEKQMM 61
           + L+ +RQFFHSHRAQPMA EQV SDRDSEDEVDDD+ADLEDRRMLDDF+DVTK EKQ+M
Sbjct: 559 RQLLQKRQFFHSHRAQPMALEQVSSDRDSEDEVDDDIADLEDRRMLDDFLDVTKYEKQIM 618

Query: 62  HMWNSFVRKQRVLADGHIPWACEAFTKLYGHDLVQAPALKW 102
           H+WNSFVRKQRVLADGHIPWACEAF++L+G DLVQAPAL W
Sbjct: 619 HLWNSFVRKQRVLADGHIPWACEAFSRLHGQDLVQAPALVW 659

Source: Yucca filamentosa

Species: Yucca filamentosa

Genus: Yucca

Family: Asparagaceae

Order: Asparagales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296084642|emb|CBI25765.3| unnamed protein product [Vitis vinifera]

 Score =  185 bits (469), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 83/101 (82%), Positives = 95/101 (94%)

Query: 2   KSLVSQRQFFHSHRAQPMAWEQVVSDRDSEDEVDDDVADLEDRRMLDDFVDVTKDEKQMM 61
           ++L+ +RQFFHSHRAQPMA +QV+SDRDSEDEVDDD+AD EDRRMLDDFVDVTKDEKQ M
Sbjct: 572 RTLLQKRQFFHSHRAQPMALDQVLSDRDSEDEVDDDIADFEDRRMLDDFVDVTKDEKQFM 631

Query: 62  HMWNSFVRKQRVLADGHIPWACEAFTKLYGHDLVQAPALKW 102
           H+WNSFVRKQRVLADGHIPWACEAF+KL+G +LVQAPA+ W
Sbjct: 632 HLWNSFVRKQRVLADGHIPWACEAFSKLHGQELVQAPAIFW 672

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359473880|ref|XP_002264066.2| PREDICTED: polycomb group protein EMBRYONIC FLOWER 2-like [Vitis vinifera]

 Score =  184 bits (467), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 83/101 (82%), Positives = 95/101 (94%)

Query: 2    KSLVSQRQFFHSHRAQPMAWEQVVSDRDSEDEVDDDVADLEDRRMLDDFVDVTKDEKQMM 61
            ++L+ +RQFFHSHRAQPMA +QV+SDRDSEDEVDDD+AD EDRRMLDDFVDVTKDEKQ M
Sbjct: 957  RTLLQKRQFFHSHRAQPMALDQVLSDRDSEDEVDDDIADFEDRRMLDDFVDVTKDEKQFM 1016

Query: 62   HMWNSFVRKQRVLADGHIPWACEAFTKLYGHDLVQAPALKW 102
            H+WNSFVRKQRVLADGHIPWACEAF+KL+G +LVQAPA+ W
Sbjct: 1017 HLWNSFVRKQRVLADGHIPWACEAFSKLHGQELVQAPAIFW 1057

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|90102226|gb|ABD85301.1| polycomb group protein EMF2 [Asparagus officinalis]

 Score =  184 bits (467), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 84/101 (83%), Positives = 93/101 (92%)

Query: 2   KSLVSQRQFFHSHRAQPMAWEQVVSDRDSEDEVDDDVADLEDRRMLDDFVDVTKDEKQMM 61
           + L+ +RQFFHSHRAQPMA EQV SDRDSEDEVDDD+AD EDRRMLDDFVDVTKDEKQ+M
Sbjct: 566 RQLLQKRQFFHSHRAQPMALEQVFSDRDSEDEVDDDIADFEDRRMLDDFVDVTKDEKQIM 625

Query: 62  HMWNSFVRKQRVLADGHIPWACEAFTKLYGHDLVQAPALKW 102
           H+WNSFVRKQRVLADGHIPWACEAF+ L+G DLV+APAL W
Sbjct: 626 HLWNSFVRKQRVLADGHIPWACEAFSLLHGRDLVRAPALIW 666

Source: Asparagus officinalis

Species: Asparagus officinalis

Genus: Asparagus

Family: Asparagaceae

Order: Asparagales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|162461708|ref|NP_001105530.1| VEF family protein [Zea mays] gi|29569111|gb|AAO84022.1| VEF family protein [Zea mays] gi|60687422|gb|AAX35735.1| embryonic flower 2 [Zea mays] gi|414884953|tpg|DAA60967.1| TPA: EMF-like protein [Zea mays]

 Score =  182 bits (462), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 81/101 (80%), Positives = 90/101 (89%)

Query: 2   KSLVSQRQFFHSHRAQPMAWEQVVSDRDSEDEVDDDVADLEDRRMLDDFVDVTKDEKQMM 61
           + L+ +RQFFHSHRAQPM  EQV SDRDSEDEVDDD+AD EDRRMLDDFVDVTKDEK +M
Sbjct: 488 RQLLQKRQFFHSHRAQPMQLEQVFSDRDSEDEVDDDIADFEDRRMLDDFVDVTKDEKLIM 547

Query: 62  HMWNSFVRKQRVLADGHIPWACEAFTKLYGHDLVQAPALKW 102
           HMWNSFVRKQRVLADGHIPWACEAF++L+G  L+Q PAL W
Sbjct: 548 HMWNSFVRKQRVLADGHIPWACEAFSQLHGRQLIQNPALLW 588

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147773657|emb|CAN63177.1| hypothetical protein VITISV_029948 [Vitis vinifera]

 Score =  182 bits (462), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 83/101 (82%), Positives = 95/101 (94%)

Query: 2   KSLVSQRQFFHSHRAQPMAWEQVVSDRDSEDEVDDDVADLEDRRMLDDFVDVTKDEKQMM 61
           ++L+ +RQFFHSHRAQPMA +QV+SDRDSEDEVDDD+AD EDRRMLDDFVDVTKDEKQ M
Sbjct: 93  RTLLQKRQFFHSHRAQPMALDQVLSDRDSEDEVDDDIADFEDRRMLDDFVDVTKDEKQFM 152

Query: 62  HMWNSFVRKQRVLADGHIPWACEAFTKLYGHDLVQAPALKW 102
           H+WNSFVRKQRVLADGHIPWACEAF+KL+G +LVQAPA+ W
Sbjct: 153 HLWNSFVRKQRVLADGHIPWACEAFSKLHGQELVQAPAIFW 193

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|85062577|gb|ABC69154.1| EMF-like [Zea mays]

 Score =  181 bits (458), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 80/101 (79%), Positives = 89/101 (88%)

Query: 2   KSLVSQRQFFHSHRAQPMAWEQVVSDRDSEDEVDDDVADLEDRRMLDDFVDVTKDEKQMM 61
           + L+ +RQFFHSHRAQPM  EQV SDRDS DEVDDD+AD EDRRMLDDFVDVTKDEK +M
Sbjct: 488 RQLLQKRQFFHSHRAQPMQLEQVFSDRDSGDEVDDDIADFEDRRMLDDFVDVTKDEKLIM 547

Query: 62  HMWNSFVRKQRVLADGHIPWACEAFTKLYGHDLVQAPALKW 102
           HMWNSFVRKQRVLADGHIPWACEAF++L+G  L+Q PAL W
Sbjct: 548 HMWNSFVRKQRVLADGHIPWACEAFSQLHGRQLIQNPALLW 588

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125605128|gb|EAZ44164.1| hypothetical protein OsJ_28786 [Oryza sativa Japonica Group]

 Score =  180 bits (457), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 82/101 (81%), Positives = 91/101 (90%)

Query: 2   KSLVSQRQFFHSHRAQPMAWEQVVSDRDSEDEVDDDVADLEDRRMLDDFVDVTKDEKQMM 61
           + L+ +RQFFHSHRAQPMA EQV SDRDSEDEVDDD+AD EDRRMLDDFVDVTKDEK +M
Sbjct: 406 RQLLQKRQFFHSHRAQPMALEQVFSDRDSEDEVDDDIADFEDRRMLDDFVDVTKDEKLIM 465

Query: 62  HMWNSFVRKQRVLADGHIPWACEAFTKLYGHDLVQAPALKW 102
           HMWNSFVRKQRVLADGHIPWACEAF++ +G +LVQ PAL W
Sbjct: 466 HMWNSFVRKQRVLADGHIPWACEAFSQFHGQELVQNPALLW 506

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|51091709|dbj|BAD36510.1| putative VEF family protein [Oryza sativa Japonica Group]

 Score =  180 bits (457), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 82/101 (81%), Positives = 91/101 (90%)

Query: 2   KSLVSQRQFFHSHRAQPMAWEQVVSDRDSEDEVDDDVADLEDRRMLDDFVDVTKDEKQMM 61
           + L+ +RQFFHSHRAQPMA EQV SDRDSEDEVDDD+AD EDRRMLDDFVDVTKDEK +M
Sbjct: 464 RQLLQKRQFFHSHRAQPMALEQVFSDRDSEDEVDDDIADFEDRRMLDDFVDVTKDEKLIM 523

Query: 62  HMWNSFVRKQRVLADGHIPWACEAFTKLYGHDLVQAPALKW 102
           HMWNSFVRKQRVLADGHIPWACEAF++ +G +LVQ PAL W
Sbjct: 524 HMWNSFVRKQRVLADGHIPWACEAFSQFHGQELVQNPALLW 564

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	102
TAIR|locus:2176242	631	EMF2 "EMBRYONIC FLOWER 2" [Ara	0.990	0.160	0.633	1.2e-29
TAIR|locus:3685330	440	VRN2 "REDUCED VERNALIZATION RE	0.970	0.225	0.535	4.8e-24
TAIR|locus:2005510	755	FIS2 "FERTILIZATION INDEPENDEN	0.931	0.125	0.4	2.2e-16
TAIR|locus:2129171	300	AT4G16810 "AT4G16810" [Arabido	0.862	0.293	0.351	4.4e-11
FB|FBgn0020887	900	Su(z)12 "Su(z)12" [Drosophila	0.5	0.056	0.372	9.8e-05
UNIPROTKB|F1PLK9	664	SUZ12 "Uncharacterized protein	0.490	0.075	0.34	0.00038
UNIPROTKB|Q0VA03	700	suz12 "Polycomb protein suz12"	0.490	0.071	0.36	0.0004
UNIPROTKB|J3QQW9	716	SUZ12 "Polycomb protein SUZ12"	0.490	0.069	0.34	0.00042
UNIPROTKB|F1RKV6	737	SUZ12 "Uncharacterized protein	0.490	0.067	0.34	0.00043
UNIPROTKB|F1NLE8	739	SUZ12 "Uncharacterized protein	0.490	0.067	0.34	0.00043

TAIR|locus:2176242 EMF2 "EMBRYONIC FLOWER 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 335 (123.0 bits), Expect = 1.2e-29, P = 1.2e-29
 Identities = 64/101 (63%), Positives = 72/101 (71%)

Query:     2 KSLVSQRQFFHSHRAQPMAWEQXXXXXXXXXXXXXXXXXXXXXXMLDDFVDVTKDEKQMM 61
             +SL+ +RQFFHSHRAQPMA EQ                      MLDDFVDVTKDEKQMM
Sbjct:   499 RSLLQKRQFFHSHRAQPMALEQVLSDRDSEDEVDDDVADFEDRRMLDDFVDVTKDEKQMM 558

Query:    62 HMWNSFVRKQRVLADGHIPWACEAFTKLYGHDLVQAPALKW 102
             HMWNSFVRKQRVLADGHIPWACEAF++L+G  +V+ P L W
Sbjct:   559 HMWNSFVRKQRVLADGHIPWACEAFSRLHGPIMVRTPHLIW 599

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0003677 "DNA binding" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0006349 "regulation of gene expression by genetic imprinting" evidence=RCA;IMP

GO:0010048 "vernalization response" evidence=RCA

GO:0016571 "histone methylation" evidence=RCA

GO:0009910 "negative regulation of flower development" evidence=IMP

TAIR|locus:3685330 VRN2 "REDUCED VERNALIZATION RESPONSE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 278 (102.9 bits), Expect = 4.8e-24, P = 4.8e-24
 Identities = 53/99 (53%), Positives = 62/99 (62%)

Query:     4 LVSQRQFFHSHRAQPMAWEQXXXXXXXXXXXXXXXXXXXXXXMLDDFVDVTKDEKQMMHM 63
             L+ +RQF+HSHR QPMA EQ                      MLDDFVDV KDEKQ MH+
Sbjct:   263 LLQKRQFYHSHRVQPMALEQVMSDRDSEDEVDDDVADFEDRQMLDDFVDVNKDEKQFMHL 322

Query:    64 WNSFVRKQRVLADGHIPWACEAFTKLYGHDLVQAPALKW 102
             WNSFVRKQRV+ADGHI WACE F++ Y  +L    +L W
Sbjct:   323 WNSFVRKQRVIADGHISWACEVFSRFYEKELHCYSSLFW 361

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006349 "regulation of gene expression by genetic imprinting" evidence=RCA;IMP

GO:0009409 "response to cold" evidence=IEP

GO:0010048 "vernalization response" evidence=IMP;RCA

GO:0016571 "histone methylation" evidence=RCA

TAIR|locus:2005510 FIS2 "FERTILIZATION INDEPENDENT SEED 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 214 (80.4 bits), Expect = 2.2e-16, P = 2.2e-16
 Identities = 38/95 (40%), Positives = 54/95 (56%)

Query:     8 RQFFHSHRAQPMAWEQXXXXXXXXXXXXXXXXXXXXXXMLDDFVDVTKDEKQMMHMWNSF 67
             RQF+HS   QP+ +EQ                       L+  V V+K+EK+ M++WN F
Sbjct:   606 RQFYHSQTMQPITFEQVMSNEDSENETDDYALDISERLRLERLVGVSKEEKRYMYLWNIF 665

Query:    68 VRKQRVLADGHIPWACEAFTKLYGHDLVQAPALKW 102
             VRKQRV+ADGH+PWACE F KL+  ++  + +  W
Sbjct:   666 VRKQRVIADGHVPWACEEFAKLHKEEMKNSSSFDW 700

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA

GO:2000014 "regulation of endosperm development" evidence=IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006306 "DNA methylation" evidence=IEP

GO:0006349 "regulation of gene expression by genetic imprinting" evidence=IEP;RCA

GO:0010048 "vernalization response" evidence=RCA

GO:0016571 "histone methylation" evidence=RCA

TAIR|locus:2129171 AT4G16810 "AT4G16810" [Arabidopsis thaliana (taxid:3702)]

 Score = 157 (60.3 bits), Expect = 4.4e-11, P = 4.4e-11
 Identities = 32/91 (35%), Positives = 51/91 (56%)

Query:     7 QRQFFHSHRAQPMAWEQXXXXXXXXXXXXXXXXXXXX--XXMLDDFVDVTKD-EKQMMHM 63
             +RQF+HS   QP++ EQ                        ML+  +D  +   ++ + +
Sbjct:    28 KRQFYHSRTGQPLSLEQVMSDRDSENDVDKNDDAAHLEESQMLNGSMDENEIVAERFIKL 87

Query:    64 WNSFVRKQRVLADGHIPWACEAFTKLYGHDL 94
             WNSFV++QR++AD HIPWACEAF++L+  +L
Sbjct:    88 WNSFVKQQRIVADAHIPWACEAFSRLHLQEL 118

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

FB|FBgn0020887 Su(z)12 "Su(z)12" [Drosophila melanogaster (taxid:7227)]

 Score = 106 (42.4 bits), Expect = 9.8e-05, P = 9.8e-05
 Identities = 19/51 (37%), Positives = 31/51 (60%)

Query:    46 MLDDFVDVTKDEKQMMHMWNSFVRKQRVLADGHIPWACEAFTKLYGHDLVQ 96
             M+D+F DV + EK++M +WN  V +   + D  +P ACE F    G ++V+
Sbjct:   563 MIDEFSDVNEGEKELMKLWNLHVMRHGFVGDCQLPIACEMFLDAKGTEIVR 613

GO:0035098 "ESC/E(Z) complex" evidence=IDA

GO:0005634 "nucleus" evidence=NAS;IDA

GO:0016571 "histone methylation" evidence=IDA

GO:0046976 "histone methyltransferase activity (H3-K27 specific)" evidence=IC

GO:0005515 "protein binding" evidence=IPI

GO:0005704 "polytene chromosome band" evidence=NAS

GO:0008283 "cell proliferation" evidence=NAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0031491 "nucleosome binding" evidence=IDA

GO:0035097 "histone methyltransferase complex" evidence=IDA

GO:0042054 "histone methyltransferase activity" evidence=IDA

GO:0007517 "muscle organ development" evidence=IMP

GO:0048813 "dendrite morphogenesis" evidence=IMP

GO:0048666 "neuron development" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

GO:2001229 "negative regulation of response to gamma radiation" evidence=IMP

UNIPROTKB|F1PLK9 SUZ12 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 99 (39.9 bits), Expect = 0.00038, P = 0.00038
 Identities = 17/50 (34%), Positives = 30/50 (60%)

Query:    47 LDDFVDVTKDEKQMMHMWNSFVRKQRVLADGHIPWACEAFTKLYGHDLVQ 96
             +++F DV + EK++M +WN  V K   +AD  +  AC  F + YG  +++
Sbjct:   525 IEEFSDVNEGEKEVMKLWNLHVMKHGFIADNQMNHACMLFVENYGQKIIK 574

GO:0045596 "negative regulation of cell differentiation" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0042054 "histone methyltransferase activity" evidence=IEA

GO:0035098 "ESC/E(Z) complex" evidence=IEA

GO:0035064 "methylated histone residue binding" evidence=IEA

GO:0016574 "histone ubiquitination" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0001739 "sex chromatin" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q0VA03 suz12 "Polycomb protein suz12" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 99 (39.9 bits), Expect = 0.00040, P = 0.00040
 Identities = 18/50 (36%), Positives = 28/50 (56%)

Query:    47 LDDFVDVTKDEKQMMHMWNSFVRKQRVLADGHIPWACEAFTKLYGHDLVQ 96
             +++F DV + EK++M MWN  V K   +AD  +   C  F   YG  ++Q
Sbjct:   557 IEEFSDVNEGEKEVMKMWNLHVMKHGFIADNQMNHGCMLFVDNYGPQIIQ 606

GO:0035098 "ESC/E(Z) complex" evidence=ISS

UNIPROTKB|J3QQW9 SUZ12 "Polycomb protein SUZ12" [Homo sapiens (taxid:9606)]

 Score = 99 (39.9 bits), Expect = 0.00042, P = 0.00042
 Identities = 17/50 (34%), Positives = 30/50 (60%)

Query:    47 LDDFVDVTKDEKQMMHMWNSFVRKQRVLADGHIPWACEAFTKLYGHDLVQ 96
             +++F DV + EK++M +WN  V K   +AD  +  AC  F + YG  +++
Sbjct:   577 IEEFSDVNEGEKEVMKLWNLHVMKHGFIADNQMNHACMLFVENYGQKIIK 626

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1RKV6 SUZ12 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 99 (39.9 bits), Expect = 0.00043, P = 0.00043
 Identities = 17/50 (34%), Positives = 30/50 (60%)

Query:    47 LDDFVDVTKDEKQMMHMWNSFVRKQRVLADGHIPWACEAFTKLYGHDLVQ 96
             +++F DV + EK++M +WN  V K   +AD  +  AC  F + YG  +++
Sbjct:   598 IEEFSDVNEGEKEVMKLWNLHVMKHGFIADNQMNHACMLFVENYGQKIIK 647

GO:0045596 "negative regulation of cell differentiation" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0042054 "histone methyltransferase activity" evidence=IEA

GO:0035098 "ESC/E(Z) complex" evidence=IEA

GO:0035064 "methylated histone residue binding" evidence=IEA

GO:0016574 "histone ubiquitination" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0001739 "sex chromatin" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1NLE8 SUZ12 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 99 (39.9 bits), Expect = 0.00043, P = 0.00043
 Identities = 17/50 (34%), Positives = 30/50 (60%)

Query:    47 LDDFVDVTKDEKQMMHMWNSFVRKQRVLADGHIPWACEAFTKLYGHDLVQ 96
             +++F DV + EK++M +WN  V K   +AD  +  AC  F + YG  +++
Sbjct:   600 IEEFSDVNEGEKEVMKLWNLHVMKHGFIADNQMNHACMLFVENYGQKIIK 649

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0001739 "sex chromatin" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

GO:0016574 "histone ubiquitination" evidence=IEA

GO:0035064 "methylated histone residue binding" evidence=IEA

GO:0035098 "ESC/E(Z) complex" evidence=IEA

GO:0042054 "histone methyltransferase activity" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045596 "negative regulation of cell differentiation" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8L6Y4	EMF2_ARATH	No assigned EC number	0.8316	0.9901	0.1600	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: Sb02g020800.1 annotation not avaliable (627 aa) (Sorghum bicolor)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	102
pfam09733	141	pfam09733, VEFS-Box, VEFS-Box of polycomb protein	2e-53

>gnl|CDD|204299 pfam09733, VEFS-Box, VEFS-Box of polycomb protein

 Score =  163 bits (414), Expect = 2e-53
 Identities = 68/95 (71%), Positives = 81/95 (85%)

Query: 8   RQFFHSHRAQPMAWEQVVSDRDSEDEVDDDVADLEDRRMLDDFVDVTKDEKQMMHMWNSF 67
           RQFFHSH  QPM  E+V+SDRDSEDEVDDD  DLE R+MLD+FVDV + EK++M +WNSF
Sbjct: 20  RQFFHSHTCQPMHPEEVMSDRDSEDEVDDDWLDLETRQMLDEFVDVNEGEKRIMKLWNSF 79

Query: 68  VRKQRVLADGHIPWACEAFTKLYGHDLVQAPALKW 102
           VRKQRV+ADGHIPWACEAF++L+G +LVQ P L W
Sbjct: 80  VRKQRVIADGHIPWACEAFSRLHGQELVQKPNLDW 114

The VEFS-Box (VRN2-EMF2-FIS2-Su(z)12) box is the C-terminal region of these proteins, characterized by an acidic cluster and a tryptophan/methionine-rich sequence, the acidic-W/M domain. Some of these sequences are associated with a zinc-finger domain about 100 residues towards the N-terminus. This protein is one of the polycomb cluster of proteins which control HOX gene transcription as it functions in heterochromatin-mediated repression. Length = 141

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	102
PF09733	140	VEFS-Box: VEFS-Box of polycomb protein; InterPro:	100.0
KOG2350	221	consensus Zn-finger protein joined to JAZF1 (predi	100.0

>PF09733 VEFS-Box: VEFS-Box of polycomb protein; InterPro: IPR019135 The VEFS-Box is found in the the C-terminal region of the VRN2, EMF2, FIS2, and Su(z)12 polycomb proteins

Probab=100.00  E-value=2.8e-52  Score=299.90  Aligned_cols=100  Identities=61%  Similarity=1.007  Sum_probs=97.9

Q ss_pred             ccccCcccccccCccccccccccCCCCCCCccChHHHHHHHHHHhhccCCCChHHHHHHHHhHHHHHhhccccCCchHHH
Q 048310            3 SLVSQRQFFHSHRAQPMAWEQVVSDRDSEDEVDDDVADLEDRRMLDDFVDVTKDEKQMMHMWNSFVRKQRVLADGHIPWA   82 (102)
Q Consensus         3 ~~l~~R~ffhs~t~~pl~~~e~~~d~DSedE~D~~Wl~~k~r~~l~dF~Dv~~~EKefM~lWN~fv~r~r~~aD~~ip~a   82 (102)
                      .+||||+||||+||+||+|+|++||+|||||+|++||+++++++|+||+|||++||+||++||+||+|||++||+|||+|
T Consensus        14 ~~~~~R~y~Hs~t~~p~~~~e~~sd~DSedE~D~~wl~~~~r~~l~dF~Dv~~~EKefM~lWN~fv~k~r~~aD~~ip~a   93 (140)
T PF09733_consen   14 ILLHNRQYFHSRTCQPMRPEEVLSDRDSEDEVDDEWLDQKHRRMLDDFSDVNEEEKEFMKLWNSFVMKQRVIADGHIPWA   93 (140)
T ss_pred             hhccCcceeccccceeccHHHhcCCCCCCCcCCHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHccCcchHHHHHH
Confidence            46999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhcCCCCCC
Q 048310           83 CEAFTKLYGHDLVQAPALKW  102 (102)
Q Consensus        83 c~~Fv~~~~~~L~~~~~l~~  102 (102)
                      |++||+.||+||+++|+|+|
T Consensus        94 c~~Fv~~~~~~L~~~~~l~~  113 (140)
T PF09733_consen   94 CEAFVREHGQWLVEKPNLRR  113 (140)
T ss_pred             HHHHHHHhHHHHhhChhHHH
Confidence            99999999999999999874

This domain is characterised by an acidic cluster and a tryptophan/methionine-rich sequence, the acidic-W/M domain []. In some proteins the VEFS-Box is associated with a zinc-finger domain located roughly 100 residues towards the N terminus. These proteins are part of the polycomb cluster of proteins which control HOX gene transcription as it functions in heterochromatin-mediated repression [].

>KOG2350 consensus Zn-finger protein joined to JAZF1 (predicted suppressor) [General function prediction only]

Probab=100.00  E-value=5e-47  Score=285.90  Aligned_cols=97  Identities=59%  Similarity=1.050  Sum_probs=94.3

Q ss_pred             cccCcccccccCccccccccccCCCCCCCccChHHHHHHHHHHhhccCCCChHHHHHHHHhHHHHHhhccccCCchHHHH
Q 048310            4 LVSQRQFFHSHRAQPMAWEQVVSDRDSEDEVDDDVADLEDRRMLDDFVDVTKDEKQMMHMWNSFVRKQRVLADGHIPWAC   83 (102)
Q Consensus         4 ~l~~R~ffhs~t~~pl~~~e~~~d~DSedE~D~~Wl~~k~r~~l~dF~Dv~~~EKefM~lWN~fv~r~r~~aD~~ip~ac   83 (102)
                      .|||||||||+|||||++++|++|+|||+|+ ++|++.++++||++|+|||++||+||++||+||+|||+|||+||||||
T Consensus        93 ~lhkRqffHS~t~qPl~leqvmsdrdsE~d~-dd~a~~e~~~mLe~fvdvne~ekr~mkLWNsfVrkqrviAD~hipwAC  171 (221)
T KOG2350|consen   93 RLHKRQFFHSDTCQPLRLEQVMSDRDSEKDE-DDWARLETSTMLEEFVDVNEGEKRVMKLWNSFVRKQRVIADGHIPWAC  171 (221)
T ss_pred             ccccceeeeccccCCCCHHHHhccccccccc-hhhhhhHHHHHHHHhccccHHHHHHHHHHHHHHHHhheeccCCCcHHH
Confidence            4999999999999999999999999999998 799999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhcCCCCCC
Q 048310           84 EAFTKLYGHDLVQAPALKW  102 (102)
Q Consensus        84 ~~Fv~~~~~~L~~~~~l~~  102 (102)
                      ++|++.||++|+.++ |.|
T Consensus       172 eaFsrlhgq~m~~~~-l~~  189 (221)
T KOG2350|consen  172 EAFSRLHGQKMIKKN-LCW  189 (221)
T ss_pred             HHHHHHhHHHHHhch-hhH
Confidence            999999999999998 866

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	102
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	1e-05

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 40.3 bits (93), Expect = 1e-05
 Identities = 14/44 (31%), Positives = 17/44 (38%), Gaps = 21/44 (47%)

Query: 57  EKQMMHMWNSFVRKQRVLADGHIPWACEAFTKLYGHDLVQAPAL 100
           EKQ        ++K   L         +A  KLY  D   APAL
Sbjct: 18  EKQA-------LKK---L---------QASLKLYADD--SAPAL 40

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00