Citrus Sinensis ID: 048321
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 641 | 2.2.26 [Sep-21-2011] | |||||||
| P0C8Q2 | 654 | Pentatricopeptide repeat- | yes | no | 0.959 | 0.940 | 0.550 | 0.0 | |
| Q3E6Q1 | 809 | Pentatricopeptide repeat- | no | no | 0.917 | 0.726 | 0.334 | 1e-102 | |
| Q9SN39 | 871 | Pentatricopeptide repeat- | no | no | 0.948 | 0.698 | 0.325 | 1e-98 | |
| Q9SS97 | 660 | Putative pentatricopeptid | no | no | 0.943 | 0.916 | 0.320 | 2e-96 | |
| Q9LTV8 | 694 | Pentatricopeptide repeat- | no | no | 0.801 | 0.740 | 0.350 | 1e-95 | |
| Q9SVP7 | 1064 | Pentatricopeptide repeat- | no | no | 0.915 | 0.551 | 0.330 | 2e-93 | |
| Q9LFL5 | 850 | Pentatricopeptide repeat- | no | no | 0.929 | 0.701 | 0.321 | 2e-93 | |
| Q9STE1 | 857 | Pentatricopeptide repeat- | no | no | 0.923 | 0.690 | 0.320 | 5e-93 | |
| Q9SMZ2 | 990 | Pentatricopeptide repeat- | no | no | 0.937 | 0.607 | 0.326 | 5e-93 | |
| Q9SUH6 | 792 | Pentatricopeptide repeat- | no | no | 0.911 | 0.737 | 0.328 | 4e-91 |
| >sp|P0C8Q2|PP323_ARATH Pentatricopeptide repeat-containing protein At4g19191, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 689 bits (1777), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/634 (55%), Positives = 441/634 (69%), Gaps = 19/634 (2%)
Query: 9 RLNRIYRSSTINQWNSQIREAVNKNEAHKTLLLFRQMKQNDIEPNNLTFPFIAKACAKLS 68
RL RI S++N WN QIREAVN+N+ ++LLLFR+MK+ EPNN TFPF+AKACA+L+
Sbjct: 7 RLYRISGLSSVNAWNLQIREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACARLA 66
Query: 69 DLIYSQMIHGHIVKSPF--------------VKCDRLDCAYKIFDEMAVRDVASWNAMLV 114
D+ +M+H H++KSPF VKC+ +D A K+F+ M RD +WNAML
Sbjct: 67 DVGCCEMVHAHLIKSPFWSDVFVGTATVDMFVKCNSVDYAAKVFERMPERDATTWNAMLS 126
Query: 115 GFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDA 174
GF Q G + LF MRL I D VTVM L Q+A K L LL+++H+ GI +GVD
Sbjct: 127 GFCQSGHTDKAFSLFREMRLNEITPDSVTVMTLIQSASFEKSLKLLEAMHAVGIRLGVDV 186
Query: 175 DVSVCNTWISSYAKCDDLKMAELVFCGIEERLRTVVSWNSMV-AGCTYGDKFDDSLNFYR 233
V+V NTWIS+Y KC DL A+LVF I+ RTVVSWNSM A +G+ FD + Y
Sbjct: 187 QVTVANTWISTYGKCGDLDSAKLVFEAIDRGDRTVVSWNSMFKAYSVFGEAFD-AFGLYC 245
Query: 234 HMMYNGFRLDVTTVVSLLSSFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCG 293
M+ F+ D++T ++L +S PE L QGRL+HSH IH G D D+ INT ISMYSK
Sbjct: 246 LMLREEFKPDLSTFINLAASCQNPETLTQGRLIHSHAIHLGTDQDIEAINTFISMYSKSE 305
Query: 294 DIDSARVLFDGICDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMIS 353
D SAR+LFD + RT VSWT MISGYA+KGD+DEAL LF AM +GE PDLVT+LS+IS
Sbjct: 306 DTCSARLLFDIMTSRTCVSWTVMISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLSLIS 365
Query: 354 GCGQSGALELGKWFDNYA-CSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKIVV 412
GCG+ G+LE GKW D A G +DNVM+CNALIDMYSKCGSI +AR++F PEK VV
Sbjct: 366 GCGKFGSLETGKWIDARADIYGCKRDNVMICNALIDMYSKCGSIHEARDIFDNTPEKTVV 425
Query: 413 SWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQ 472
+WTTMIAG ALNG F+EAL LF ++++LD +PN +TFLAVLQAC H+G LEKGW I
Sbjct: 426 TWTTMIAGYALNGIFLEALKLFSKMIDLDYKPNHITFLAVLQACAHSGSLEKGWEYFHIM 485
Query: 473 YDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHLNI 532
IS P LDHYSCM DLLGRKGKL+EAL+ +++M K DAGIWG LL ACKIH N+
Sbjct: 486 KQVYNIS--PGLDHYSCMVDLLGRKGKLEEALELIRNMSAKPDAGIWGALLNACKIHRNV 543
Query: 533 EIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRNQVKKFPGQSLFHI 592
+I E A LF LEP AAPYVEMAN YA G WDG A IR++MK+ +KK+PG+S+ +
Sbjct: 544 KIAEQAAESLFNLEPQMAAPYVEMANIYAAAGMWDGFARIRSIMKQRNIKKYPGESVIQV 603
Query: 593 NGKTCTFTAEDRYHAESELTYPVLDCLALHSREE 626
NGK +FT + H E+E+ Y L+ L+L ++++
Sbjct: 604 NGKNHSFTVGEHGHVENEVIYFTLNGLSLFAKDK 637
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290 OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 373 bits (957), Expect = e-102, Method: Compositional matrix adjust.
Identities = 203/606 (33%), Positives = 320/606 (52%), Gaps = 18/606 (2%)
Query: 37 KTLLLFRQMKQNDIEPNNLTFPFIAKACAKLSDLIYSQMIHGHIVKSPF----------- 85
K L F +M+ +D+EP F ++ K C ++L + IHG +VKS F
Sbjct: 118 KALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLE 177
Query: 86 ---VKCDRLDCAYKIFDEMAVRDVASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFV 142
KC +++ A K+FD M RD+ SWN ++ G++Q G L + +M ++ F+
Sbjct: 178 NMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFI 237
Query: 143 TVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISSYAKCDDLKMAELVFCGI 202
T++ + A + +S+ K +H + + G D+ V++ + YAKC L+ A +F G+
Sbjct: 238 TIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGM 297
Query: 203 EERLRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVVSLLSSFVCPEALVQ 262
ER VVSWNSM+ + +++ ++ M+ G + +V+ L + L +
Sbjct: 298 LER--NVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLER 355
Query: 263 GRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGICDRTRVSWTAMISGYAQ 322
GR +H + G D +VSV+N+LISMY KC ++D+A +F + RT VSW AMI G+AQ
Sbjct: 356 GRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQ 415
Query: 323 KGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMV 382
G +AL F M + PD T +S+I+ + KW L NV V
Sbjct: 416 NGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFV 475
Query: 383 CNALIDMYSKCGSIGDARELFYALPEKIVVSWTTMIAGCALNGEFVEALDLFHQLMELDL 442
AL+DMY+KCG+I AR +F + E+ V +W MI G +G AL+LF ++ + +
Sbjct: 476 TTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTI 535
Query: 443 RPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKE 502
+PN VTFL+V+ AC+H+G +E G + ++ I + +DHY M DLLGR G+L E
Sbjct: 536 KPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELS--MDHYGAMVDLLGRAGRLNE 593
Query: 503 ALDFVQSMPIKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYAL 562
A DF+ MP+K ++G +L AC+IH N+ E A LF+L P +V +AN Y
Sbjct: 594 AWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRA 653
Query: 563 GGRWDGVANIRTMMKRNQVKKFPGQSLFHINGKTCTFTAEDRYHAESELTYPVLDCLALH 622
W+ V +R M R ++K PG S+ I + +F + H +S+ Y L+ L H
Sbjct: 654 ASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICH 713
Query: 623 SREEAY 628
+E Y
Sbjct: 714 IKEAGY 719
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 361 bits (926), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 205/629 (32%), Positives = 338/629 (53%), Gaps = 21/629 (3%)
Query: 22 WNSQIREAVNKNEAHKTLLLFRQMKQNDIEPNNLTFPFIAKACAKLSDLIYSQMIHGHIV 81
WN + E + ++ LF++M + +E ++ TF ++K+ + L + + +HG I+
Sbjct: 163 WNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFIL 222
Query: 82 KSPF--------------VKCDRLDCAYKIFDEMAVRDVASWNAMLVGFAQMGFLENVLR 127
KS F +K R+D A K+FDEM RDV SWN+++ G+ G E L
Sbjct: 223 KSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLS 282
Query: 128 LFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISSYA 187
+F M + GI+ D T++ + ++ +SL ++VHS G+ + CNT + Y+
Sbjct: 283 VFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYS 342
Query: 188 KCDDLKMAELVFCGIEERLRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTV 247
KC DL A+ VF + +R +VVS+ SM+AG +++ + M G DV TV
Sbjct: 343 KCGDLDSAKAVFREMSDR--SVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTV 400
Query: 248 VSLLSSFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGICD 307
++L+ L +G+ VH D+ V N L+ MY+KCG + A ++F +
Sbjct: 401 TAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRV 460
Query: 308 RTRVSWTAMISGYAQKGDLDEALRLF-FAMEAAGELPDLVTVLSMISGCGQSGALELGKW 366
+ +SW +I GY++ +EAL LF +E PD TV ++ C A + G+
Sbjct: 461 KDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGRE 520
Query: 367 FDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKIVVSWTTMIAGCALNGE 426
Y G + V N+L+DMY+KCG++ A LF + K +VSWT MIAG ++G
Sbjct: 521 IHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGF 580
Query: 427 FVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAI-SIIQYDDKGISYNPELD 485
EA+ LF+Q+ + + + ++F+++L AC+H+G +++GW +I++++ K P ++
Sbjct: 581 GKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECK---IEPTVE 637
Query: 486 HYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKL 545
HY+C+ D+L R G L +A F+++MPI DA IWG LLC C+IH ++++ E VA +F+L
Sbjct: 638 HYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFEL 697
Query: 546 EPHSAAPYVEMANKYALGGRWDGVANIRTMMKRNQVKKFPGQSLFHINGKTCTFTAEDRY 605
EP + YV MAN YA +W+ V +R + + ++K PG S I G+ F A D
Sbjct: 698 EPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSS 757
Query: 606 HAESELTYPVLDCLALHSREEAYSSHLKW 634
+ E+E L + EE YS K+
Sbjct: 758 NPETENIEAFLRKVRARMIEEGYSPLTKY 786
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SS97|PP205_ARATH Putative pentatricopeptide repeat-containing protein At3g01580 OS=Arabidopsis thaliana GN=PCMP-E87 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 353 bits (907), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 201/627 (32%), Positives = 329/627 (52%), Gaps = 22/627 (3%)
Query: 18 TINQWNSQIREAVNKNEAHKTLLLFRQMKQNDIEPNNLTFPFIAKACAKLSDLIYSQMIH 77
++ QWN+ ++ + + + L F M +++ +P+N T P KAC +L ++ Y +MIH
Sbjct: 24 SLYQWNTLLKSLSREKQWEEVLYHFSHMFRDEEKPDNFTLPVALKACGELREVNYGEMIH 83
Query: 78 GHIVKSP---------------FVKCDRLDCAYKIFDEMAVRDVASWNAMLVGFAQMGFL 122
G + K ++KC R+ A ++FDE+ D+ +W++M+ GF + G
Sbjct: 84 GFVKKDVTLGSDLYVGSSLIYMYIKCGRMIEALRMFDELEKPDIVTWSSMVSGFEKNGSP 143
Query: 123 ENVLRLFYNMRLVG-IQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNT 181
+ F M + + D VT++ L A + L + VH F I G D+S+ N+
Sbjct: 144 YQAVEFFRRMVMASDVTPDRVTLITLVSACTKLSNSRLGRCVHGFVIRRGFSNDLSLVNS 203
Query: 182 WISSYAKCDDLKMAELVFCGIEERLRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFR 241
++ YAK K A +F I E+ V+SW++++A ++L + MM +G
Sbjct: 204 LLNCYAKSRAFKEAVNLFKMIAEK--DVISWSTVIACYVQNGAAAEALLVFNDMMDDGTE 261
Query: 242 LDVTTVVSLLSSFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVL 301
+V TV+ +L + L QGR H I G + +V V L+ MY KC + A +
Sbjct: 262 PNVATVLCVLQACAAAHDLEQGRKTHELAIRKGLETEVKVSTALVDMYMKCFSPEEAYAV 321
Query: 302 FDGICDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEL-PDLVTVLSMISGCGQSGA 360
F I + VSW A+ISG+ G ++ F M PD + ++ ++ C + G
Sbjct: 322 FSRIPRKDVVSWVALISGFTLNGMAHRSIEEFSIMLLENNTRPDAILMVKVLGSCSELGF 381
Query: 361 LELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKIVVSWTTMIAG 420
LE K F +Y G N + +L+++YS+CGS+G+A ++F + K V WT++I G
Sbjct: 382 LEQAKCFHSYVIKYGFDSNPFIGASLVELYSRCGSLGNASKVFNGIALKDTVVWTSLITG 441
Query: 421 CALNGEFVEALDLF-HQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGIS 479
++G+ +AL+ F H + +++PN VTFL++L AC+H G + +G I + +D ++
Sbjct: 442 YGIHGKGTKALETFNHMVKSSEVKPNEVTFLSILSACSHAGLIHEGLRIFKLMVNDYRLA 501
Query: 480 YNPELDHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHLNIEIGEYVA 539
P L+HY+ + DLLGR G L A++ + MP I GTLL AC+IH N E+ E VA
Sbjct: 502 --PNLEHYAVLVDLLGRVGDLDTAIEITKRMPFSPTPQILGTLLGACRIHQNGEMAETVA 559
Query: 540 YCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRNQVKKFPGQSLFHINGKTCTF 599
LF+LE + A Y+ M+N Y + G W+ V +R +K+ +KK +SL I K F
Sbjct: 560 KKLFELESNHAGYYMLMSNVYGVKGEWENVEKLRNSVKQRGIKKGLAESLIEIRRKVHRF 619
Query: 600 TAEDRYHAESELTYPVLDCLALHSREE 626
A+D H E E Y +L L LH +E+
Sbjct: 620 VADDELHPEKEPVYGLLKELDLHMKED 646
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 351 bits (900), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 181/517 (35%), Positives = 287/517 (55%), Gaps = 3/517 (0%)
Query: 94 AYKIFDEMAVRDVASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIH 153
A ++FD++ + WNA++ G+++ ++ L ++ NM+L + D T L +A
Sbjct: 72 ARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSG 131
Query: 154 AKHLSLLKSVHSFGIHIGVDADVSVCNTWISSYAKCDDLKMAELVFCGIEERLRTVVSWN 213
HL + + VH+ +G DADV V N I+ YAKC L A VF G+ RT+VSW
Sbjct: 132 LSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWT 191
Query: 214 SMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVVSLLSSFVCPEALVQGRLVHSHGIHY 273
++V+ + ++L + M + D +VS+L++F C + L QGR +H+ +
Sbjct: 192 AIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKM 251
Query: 274 GFDLDVSVINTLISMYSKCGDIDSARVLFDGICDRTRVSWTAMISGYAQKGDLDEALRLF 333
G +++ ++ +L +MY+KCG + +A++LFD + + W AMISGYA+ G EA+ +F
Sbjct: 252 GLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMF 311
Query: 334 FAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKC 393
M PD +++ S IS C Q G+LE + Y +D+V + +ALIDM++KC
Sbjct: 312 HEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKC 371
Query: 394 GSIGDARELFYALPEKIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVL 453
GS+ AR +F ++ VV W+ MI G L+G EA+ L+ + + PN VTFL +L
Sbjct: 372 GSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLL 431
Query: 454 QACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMPIK 513
AC H+G + +GW D K NP+ HY+C+ DLLGR G L +A + ++ MP++
Sbjct: 432 MACNHSGMVREGWWFFNRMADHK---INPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQ 488
Query: 514 SDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIR 573
+WG LL ACK H ++E+GEY A LF ++P + YV+++N YA WD VA +R
Sbjct: 489 PGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVR 548
Query: 574 TMMKRNQVKKFPGQSLFHINGKTCTFTAEDRYHAESE 610
MK + K G S + G+ F D+ H E
Sbjct: 549 VRMKEKGLNKDVGCSWVEVRGRLEAFRVGDKSHPRYE 585
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 343 bits (881), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 202/611 (33%), Positives = 306/611 (50%), Gaps = 24/611 (3%)
Query: 35 AHKTLLLFRQMKQNDIEPNNLTFPFIAKACAKLSDLIYSQMIHGHIVKSPFV-------- 86
K + LF++M + +EP++ T + AC+ L Q +H + K F
Sbjct: 370 GEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGA 429
Query: 87 ------KCDRLDCAYKIFDEMAVRDVASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQAD 140
KC ++ A F E V +V WN MLV + + L N R+F M++ I +
Sbjct: 430 LLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPN 489
Query: 141 FVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISSYAKCDDLKMA---EL 197
T + + I L L + +HS I + VC+ I YAK L A +
Sbjct: 490 QYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILI 549
Query: 198 VFCGIEERLRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVVSLLSSFVCP 257
F G + VVSW +M+AG T + D +L +R M+ G R D + + +S+
Sbjct: 550 RFAG-----KDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGL 604
Query: 258 EALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGICDRTRVSWTAMI 317
+AL +G+ +H+ GF D+ N L+++YS+CG I+ + + F+ ++W A++
Sbjct: 605 QALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALV 664
Query: 318 SGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLK 377
SG+ Q G+ +EALR+F M G + T S + ++ ++ GK G
Sbjct: 665 SGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYD 724
Query: 378 DNVMVCNALIDMYSKCGSIGDARELFYALPEKIVVSWTTMIAGCALNGEFVEALDLFHQL 437
VCNALI MY+KCGSI DA + F + K VSW +I + +G EALD F Q+
Sbjct: 725 SETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQM 784
Query: 438 MELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRK 497
+ ++RPN VT + VL AC+H G ++KG A + G+S PE HY C+ D+L R
Sbjct: 785 IHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPE--HYVCVVDMLTRA 842
Query: 498 GKLKEALDFVQSMPIKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMA 557
G L A +F+Q MPIK DA +W TLL AC +H N+EIGE+ A+ L +LEP +A YV ++
Sbjct: 843 GLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLS 902
Query: 558 NKYALGGRWDGVANIRTMMKRNQVKKFPGQSLFHINGKTCTFTAEDRYHAESELTYPVLD 617
N YA+ +WD R MK VKK PGQS + +F D+ H ++ +
Sbjct: 903 NLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQ 962
Query: 618 CLALHSREEAY 628
L + E Y
Sbjct: 963 DLTKRASEIGY 973
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 343 bits (881), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 218/678 (32%), Positives = 338/678 (49%), Gaps = 82/678 (12%)
Query: 6 LPPRLNRIYRSSTINQWNSQIREAVNKNEAHKTLLLFRQMKQNDIEPNNLTFPFIAKACA 65
PP +Y WNS IR + A+K L LF M P+N TFPF+ KAC
Sbjct: 85 FPPSDAGVY------HWNSLIRSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACG 138
Query: 66 KLSDLIYSQMIH--------------GHIVKSPFVKCDRLDCAYKIFDEMAVRDVASWNA 111
++S + + H G+ + + + +C L A K+FDEM+V DV SWN+
Sbjct: 139 EISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNS 198
Query: 112 MLVGFAQMGFLENVLRLFYNM-RLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHI 170
++ +A++G + L +F M G + D +T++ + SL K +H F +
Sbjct: 199 IIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTS 258
Query: 171 GVDADVSVCNTWISSYAKCDDLKMAELVFCGIEERLRTVVSWNSMVAGCTYGDKFDDSLN 230
+ ++ V N + YAKC + A VF + ++ VVSWN+MVAG + +F+D++
Sbjct: 259 EMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMS--VKDVVSWNAMVAGYSQIGRFEDAVR 316
Query: 231 FY-----------------------------------RHMMYNGFRLDVTTVVSLLSSFV 255
+ R M+ +G + + T++S+LS
Sbjct: 317 LFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCA 376
Query: 256 CPEALVQGRLVHSHGIHYGFDLDVS-------VINTLISMYSKCGDIDSARVLFDGICDR 308
AL+ G+ +H + I Y DL + VIN LI MY+KC +D+AR +FD + +
Sbjct: 377 SVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPK 436
Query: 309 TR--VSWTAMISGYAQKGDLDEALRLFFAM--EAAGELPDLVTVLSMISGCGQSGALELG 364
R V+WT MI GY+Q GD ++AL L M E P+ T+ + C AL +G
Sbjct: 437 ERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIG 496
Query: 365 KWFDNYACSGGLKD-NVMVCNALIDMYSKCGSIGDARELFYALPEKIVVSWTTMIAGCAL 423
K YA + V N LIDMY+KCGSI DAR +F + K V+WT+++ G +
Sbjct: 497 KQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGM 556
Query: 424 NGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDK-----GI 478
+G EAL +F ++ + + + VT L VL AC+H+G +++G ++Y ++ G+
Sbjct: 557 HGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQG-----MEYFNRMKTVFGV 611
Query: 479 SYNPELDHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHLNIEIGEYV 538
S PE HY+C+ DLLGR G+L AL ++ MP++ +W L C+IH +E+GEY
Sbjct: 612 SPGPE--HYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVELGEYA 669
Query: 539 AYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRNQVKKFPGQSLFHINGKTCT 598
A + +L + Y ++N YA GRW V IR++M+ VKK PG S T T
Sbjct: 670 AEKITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEGIKGTTT 729
Query: 599 FTAEDRYHAESELTYPVL 616
F D+ H ++ Y VL
Sbjct: 730 FFVGDKTHPHAKEIYQVL 747
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9STE1|PP333_ARATH Pentatricopeptide repeat-containing protein At4g21300 OS=Arabidopsis thaliana GN=PCMP-E36 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 342 bits (877), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 196/612 (32%), Positives = 319/612 (52%), Gaps = 20/612 (3%)
Query: 42 FRQMKQNDIEPNNLTFPFIAKACAKLSDLIYSQMIHGHIVKSP--------------FVK 87
F M+ + I PN +TF + CA + +HG +V S + K
Sbjct: 227 FSVMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGSIKNSLLSMYSK 286
Query: 88 CDRLDCAYKIFDEMAVRDVASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGL 147
C R D A K+F M+ D +WN M+ G+ Q G +E L FY M G+ D +T L
Sbjct: 287 CGRFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDAITFSSL 346
Query: 148 TQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISSYAKCDDLKMAELVFCGIEERLR 207
+ ++L K +H + + + D+ + + I +Y KC + MA+ +F
Sbjct: 347 LPSVSKFENLEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQCNSV-- 404
Query: 208 TVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVVSLLSSFVCPEALVQGRLVH 267
VV + +M++G + + DSL +R ++ + T+VS+L AL GR +H
Sbjct: 405 DVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSILPVIGILLALKLGRELH 464
Query: 268 SHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGICDRTRVSWTAMISGYAQKGDLD 327
I GFD ++ +I MY+KCG ++ A +F+ + R VSW +MI+ AQ +
Sbjct: 465 GFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFERLSKRDIVSWNSMITRCAQSDNPS 524
Query: 328 EALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALI 387
A+ +F M +G D V++ + +S C + GK + L +V + LI
Sbjct: 525 AAIDIFRQMGVSGICYDCVSISAALSACANLPSESFGKAIHGFMIKHSLASDVYSESTLI 584
Query: 388 DMYSKCGSIGDARELFYALPEKIVVSWTTMIAGCALNGEFVEALDLFHQLMELD-LRPNR 446
DMY+KCG++ A +F + EK +VSW ++IA C +G+ ++L LFH+++E +RP++
Sbjct: 585 DMYAKCGNLKAAMNVFKTMKEKNIVSWNSIIAACGNHGKLKDSLCLFHEMVEKSGIRPDQ 644
Query: 447 VTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDF 506
+TFL ++ +C H G +++G +D GI P+ +HY+C+ DL GR G+L EA +
Sbjct: 645 ITFLEIISSCCHVGDVDEGVRFFRSMTEDYGI--QPQQEHYACVVDLFGRAGRLTEAYET 702
Query: 507 VQSMPIKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRW 566
V+SMP DAG+WGTLL AC++H N+E+ E + L L+P ++ YV ++N +A W
Sbjct: 703 VKSMPFPPDAGVWGTLLGACRLHKNVELAEVASSKLMDLDPSNSGYYVLISNAHANAREW 762
Query: 567 DGVANIRTMMKRNQVKKFPGQSLFHINGKTCTFTAEDRYHAESELTYPVLDCLALHSREE 626
+ V +R++MK +V+K PG S IN +T F + D H ES Y +L+ L R E
Sbjct: 763 ESVTKVRSLMKEREVQKIPGYSWIEINKRTHLFVSGDVNHPESSHIYSLLNSLLGELRLE 822
Query: 627 AYSSHLKWIPEH 638
Y ++P H
Sbjct: 823 GYIPQ-PYLPLH 833
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protein At4g33170 OS=Arabidopsis thaliana GN=PCMP-H53 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 342 bits (877), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 203/621 (32%), Positives = 328/621 (52%), Gaps = 20/621 (3%)
Query: 23 NSQIREAVNKNEAHKTLLLFRQMKQNDIEPNNLTFPFIAKACAKLSDLIYSQMIHGHIVK 82
N + E ++ + L F M ++D+E + +TF + K+ L Q +H +K
Sbjct: 284 NKGLSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALK 343
Query: 83 --------------SPFVKCDRLDCAYKIFDEMAVRDVASWNAMLVGFAQMGFLENVLRL 128
+ + K + A +FD M+ RD+ SWN+++ G AQ G + L
Sbjct: 344 LGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCL 403
Query: 129 FYNMRLVGIQADFVTVMGLTQAAIH-AKHLSLLKSVHSFGIHIGVDADVSVCNTWISSYA 187
F + G++ D T+ + +AA + LSL K VH I I +D V I +Y+
Sbjct: 404 FMQLLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYS 463
Query: 188 KCDDLKMAELVFCGIEERLRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTV 247
+ +K AE++F E +V+WN+M+AG T +L + M G R D T+
Sbjct: 464 RNRCMKEAEILF---ERHNFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTL 520
Query: 248 VSLLSSFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGICD 307
++ + A+ QG+ VH++ I G+DLD+ V + ++ MY KCGD+ +A+ FD I
Sbjct: 521 ATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPV 580
Query: 308 RTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWF 367
V+WT MISG + G+ + A +F M G LPD T+ ++ ALE G+
Sbjct: 581 PDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQI 640
Query: 368 DNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKIVVSWTTMIAGCALNGEF 427
A ++ V +L+DMY+KCGSI DA LF + + +W M+ G A +GE
Sbjct: 641 HANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEG 700
Query: 428 VEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHY 487
E L LF Q+ L ++P++VTF+ VL AC+H+G + + + + D GI PE++HY
Sbjct: 701 KETLQLFKQMKSLGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGI--KPEIEHY 758
Query: 488 SCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEP 547
SC+AD LGR G +K+A + ++SM +++ A ++ TLL AC++ + E G+ VA L +LEP
Sbjct: 759 SCLADALGRAGLVKQAENLIESMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEP 818
Query: 548 HSAAPYVEMANKYALGGRWDGVANIRTMMKRNQVKKFPGQSLFHINGKTCTFTAEDRYHA 607
++ YV ++N YA +WD + RTMMK ++VKK PG S + K F +DR +
Sbjct: 819 LDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHIFVVDDRSNR 878
Query: 608 ESELTYPVLDCLALHSREEAY 628
++EL Y + + ++E Y
Sbjct: 879 QTELIYRKVKDMIRDIKQEGY 899
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 336 bits (861), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 205/624 (32%), Positives = 333/624 (53%), Gaps = 40/624 (6%)
Query: 29 AVNKNEAHKTLLLFRQM-KQNDIEPNNLTFPFIAKACAKLSDLIYSQMIHGH-------- 79
+VN++ H +L +F + K D++PN+ T+ F A + D ++IHG
Sbjct: 94 SVNES-PHSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGRVIHGQAVVDGCDS 152
Query: 80 -------IVKSPFVKCDRLDCAYKIFDEMAVRDVASWNAMLVGFAQMGFLENVLRLFYNM 132
IVK F K R++ A K+FD M +D WN M+ G+ + +++F ++
Sbjct: 153 ELLLGSNIVKMYF-KFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDL 211
Query: 133 -RLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISSYAKCDD 191
+ D T++ + A + L L +HS G + V +IS Y+KC
Sbjct: 212 INESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGK 271
Query: 192 LKMAELVFCGIEERLRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVVSLL 251
+KM +F E R +V++N+M+ G T + + SL+ ++ +M +G RL +T+VSL+
Sbjct: 272 IKMGSALFR--EFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLV 329
Query: 252 SSFVCPEALVQGRL-----VHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGIC 306
V G L +H + + F SV L ++YSK +I+SAR LFD
Sbjct: 330 P--------VSGHLMLIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESP 381
Query: 307 DRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKW 366
+++ SW AMISGY Q G ++A+ LF M+ + P+ VT+ ++S C Q GAL LGKW
Sbjct: 382 EKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKW 441
Query: 367 FDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKIVVSWTTMIAGCALNGE 426
+ S + ++ V ALI MY+KCGSI +AR LF + +K V+W TMI+G L+G+
Sbjct: 442 VHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQ 501
Query: 427 FVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAI--SIIQYDDKGISYNPEL 484
EAL++F++++ + P VTFL VL AC+H G +++G I S+I + P +
Sbjct: 502 GQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHR----YGFEPSV 557
Query: 485 DHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFK 544
HY+CM D+LGR G L+ AL F+++M I+ + +W TLL AC+IH + + V+ LF+
Sbjct: 558 KHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGACRIHKDTNLARTVSEKLFE 617
Query: 545 LEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRNQVKKFPGQSLFHINGKTCTFTAEDR 604
L+P + +V ++N ++ + A +R K+ ++ K PG +L I FT+ D+
Sbjct: 618 LDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQ 677
Query: 605 YHAESELTYPVLDCLALHSREEAY 628
H + + Y L+ L RE Y
Sbjct: 678 SHPQVKEIYEKLEKLEGKMREAGY 701
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 641 | ||||||
| 225438593 | 637 | PREDICTED: pentatricopeptide repeat-cont | 0.971 | 0.978 | 0.602 | 0.0 | |
| 147769567 | 609 | hypothetical protein VITISV_020733 [Viti | 0.926 | 0.975 | 0.594 | 0.0 | |
| 449451649 | 651 | PREDICTED: pentatricopeptide repeat-cont | 0.984 | 0.969 | 0.558 | 0.0 | |
| 297804224 | 1251 | putative protein [Arabidopsis lyrata sub | 0.946 | 0.485 | 0.560 | 0.0 | |
| 356528513 | 651 | PREDICTED: pentatricopeptide repeat-cont | 0.964 | 0.949 | 0.551 | 0.0 | |
| 2828294 | 1260 | putatative protein [Arabidopsis thaliana | 0.959 | 0.488 | 0.550 | 0.0 | |
| 186512044 | 654 | pentatricopeptide repeat-containing prot | 0.959 | 0.940 | 0.550 | 0.0 | |
| 255582516 | 468 | pentatricopeptide repeat-containing prot | 0.667 | 0.914 | 0.624 | 1e-154 | |
| 148909481 | 795 | unknown [Picea sitchensis] | 0.937 | 0.755 | 0.369 | 1e-117 | |
| 356557757 | 1227 | PREDICTED: pentatricopeptide repeat-cont | 0.964 | 0.503 | 0.335 | 1e-106 |
| >gi|225438593|ref|XP_002276456.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191, mitochondrial [Vitis vinifera] gi|296082485|emb|CBI21490.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 780 bits (2015), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/639 (60%), Positives = 475/639 (74%), Gaps = 16/639 (2%)
Query: 1 MAVSSLPPRLNRIYRSSTINQWNSQIREAVNKNEAHKTLLLFRQMKQNDIEPNNLTFPFI 60
M + NR T+ QWNS I E+VN+ AHK LLLFRQMKQN +EPNNLTFP +
Sbjct: 1 MVTPAATQSFNRFSNLWTVAQWNSSITESVNQGYAHKALLLFRQMKQNGLEPNNLTFPSV 60
Query: 61 AKACAKLSDLIYSQMIHGHIVKSPF--------------VKCDRLDCAYKIFDEMAVRDV 106
AKAC+KL +L YSQ++H H+VKS F VKC +L AY +F M RDV
Sbjct: 61 AKACSKLLNLKYSQIVHTHVVKSRFQADLFVQTSVVDMYVKCSQLGFAYNLFSRMPKRDV 120
Query: 107 ASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSF 166
ASWN+M++GFAQ+GF++ V+ LF M + GI+AD VTV+GLT +A+ K L +L+S+HSF
Sbjct: 121 ASWNSMILGFAQLGFVDRVVSLFCEMGIEGIRADSVTVIGLTHSALSLKDLKMLESIHSF 180
Query: 167 GIHIGVDADVSVCNTWISSYAKCDDLKMAELVFCGIEERLRTVVSWNSMVAGCTYGDKFD 226
GI IG+D DVSV NTWI++YAKC + +AE VF GI++ L+T VSWNSM+AG + ++
Sbjct: 181 GIKIGIDTDVSVSNTWIAAYAKCGEFGLAETVFDGIDKGLKTGVSWNSMIAGYAHFEQCS 240
Query: 227 DSLNFYRHMMYNGFRLDVTTVVSLLSSFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLI 286
++ F++ M+ GFR D++T++SLLSS V PE L G+L+H+HGI G D D+ VINTLI
Sbjct: 241 KAVGFFKKMLCGGFRADLSTILSLLSSCVQPEVLFHGKLIHAHGIQVGCDSDIQVINTLI 300
Query: 287 SMYSKCGDIDSARVLFDGICDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLV 346
SMYSKCGDI SAR LFD + +TRVSWTAMI+GYA+KGDLDEA+ LF AMEA GE PDLV
Sbjct: 301 SMYSKCGDIGSARYLFDNMLGKTRVSWTAMIAGYAEKGDLDEAMTLFSAMEAVGEKPDLV 360
Query: 347 TVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYAL 406
T++S++SGCGQ+GALELGKW D YA + GLKDN+MVCNALID+Y+KCGS+ +ARELFY +
Sbjct: 361 TIISLMSGCGQTGALELGKWIDTYATANGLKDNLMVCNALIDVYAKCGSMDNARELFYTM 420
Query: 407 PEKIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGW 466
PEK +VSWTT+IAGCALNGEF EAL LF Q++EL L+PN +TFLAVLQAC H GFLEKGW
Sbjct: 421 PEKSLVSWTTLIAGCALNGEFKEALGLFFQMVELGLKPNHITFLAVLQACNHAGFLEKGW 480
Query: 467 AISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCAC 526
K NP LDHYSCMADLLGRKG+LKEA +F+Q+MP K D GIW LL AC
Sbjct: 481 --ECFNLMTKVYKINPGLDHYSCMADLLGRKGRLKEAFEFIQNMPFKPDVGIWSVLLSAC 538
Query: 527 KIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRNQVKKFPG 586
KIH N+ IGE VAY LF+LEP +A PYV+MAN YA G+WD VA IRTMMK N+ K PG
Sbjct: 539 KIHQNVVIGECVAYHLFELEPQTAVPYVQMANIYASAGKWDRVAAIRTMMKCNKAMKSPG 598
Query: 587 QSLFHINGKTCTFTAEDRYHAESELTYPVLDCLALHSRE 625
+SL +NGKT FT EDR H E L Y L+ LAL +E
Sbjct: 599 KSLVQVNGKTHEFTVEDRCHPEGLLIYETLENLALQMKE 637
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147769567|emb|CAN65709.1| hypothetical protein VITISV_020733 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 739 bits (1908), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/617 (59%), Positives = 454/617 (73%), Gaps = 23/617 (3%)
Query: 1 MAVSSLPPRLNRIYRSSTINQWNSQIREAVNKNEAHKTLLLFRQMKQNDIEPNNLTFPFI 60
M + NR T+ QWNS I E+VN+ AHK LLLFRQMKQN +EPNNLTFP +
Sbjct: 1 MVTPAATQSFNRFSNLWTVAQWNSSITESVNQGYAHKALLLFRQMKQNGLEPNNLTFPSV 60
Query: 61 AKACAKLSDLIYSQMIHGHIVKSPF--------------VKCDRLDCAYKIFDEMAVRDV 106
AKAC+KL +L YSQ++H H+VKS F VKC +L AY +F M RDV
Sbjct: 61 AKACSKLLNLKYSQIVHTHVVKSRFQADLFVQTSVVDMYVKCSQLGFAYNLFSRMPXRDV 120
Query: 107 ASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSF 166
ASWN+M+ GFAQ+GF++ V+ LF M + GI+AD VTV+GLT +A+ K L +L+S+HSF
Sbjct: 121 ASWNSMIXGFAQLGFVDRVVSLFCEMGIEGIRADSVTVIGLTHSALSLKDLKMLESIHSF 180
Query: 167 GIHIGVDADVSVCNTWISSYAKCDDLKMAELVFCGIEERLRTVVSWNSMVAGCTYGDKFD 226
GI IG+D DVSV NTWI++YAKC + +AE VF GI++ L+T VSWNSM+AG + ++
Sbjct: 181 GIKIGIDTDVSVSNTWIAAYAKCGEFGLAETVFDGIDKGLKTXVSWNSMIAGYAHFEQCS 240
Query: 227 DSLNFYRHMMYNGFRLDVTTVVSLLSSFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLI 286
++ F++ M+ GFR D++T++SLLSS V PE L G+L+H+HGI G D D+ VINTLI
Sbjct: 241 KAVGFFKKMLXGGFRADLSTILSLLSSCVQPEVLFHGKLIHAHGIQVGCDSDIQVINTLI 300
Query: 287 SMYSKCGDIDSARVLFDGICDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLV 346
SMYSKCGDI SAR LFD + +TRVSWTAMI+G A+KGDLDEA+ LF AMEA GE PDLV
Sbjct: 301 SMYSKCGDIGSARYLFDNMLGKTRVSWTAMIAGXAEKGDLDEAMTLFSAMEAVGEKPDLV 360
Query: 347 TVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYAL 406
T++S++SGCGQ+GALELGKW D YA + GLKDN+MVCNALID+Y+KCGS+ +ARELFY +
Sbjct: 361 TIISLMSGCGQTGALELGKWIDTYATANGLKDNLMVCNALIDVYAKCGSMDNARELFYTM 420
Query: 407 PEKIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGW 466
PEK +VSWTT+IAGCALNGEF EAL LF Q++EL L+PN +TFLAVLQAC H GFLEKGW
Sbjct: 421 PEKSLVSWTTLIAGCALNGEFKEALGLFFQMVELGLKPNHITFLAVLQACNHAGFLEKGW 480
Query: 467 AISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCAC 526
K NP LDHYSCMADLLGRKG+LKEA +F+Q+MP K D GIW LL AC
Sbjct: 481 --ECFNLMTKVYKINPGLDHYSCMADLLGRKGRLKEAFEFIQNMPFKPDVGIWSVLLSAC 538
Query: 527 KIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRNQVKKFPG 586
KIH N+ IGE VAY LF+LEP +A PYV+MAN YA G+WD VA IRTMMK N+ K G
Sbjct: 539 KIHQNVVIGECVAYHLFELEPQTAVPYVQMANIYASAGKWDRVAAIRTMMKCNKAMKSSG 598
Query: 587 QSLFHINGKTCTFTAED 603
+ K C+ ED
Sbjct: 599 E-------KPCSSKWED 608
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449451649|ref|XP_004143574.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191, mitochondrial-like [Cucumis sativus] gi|449516723|ref|XP_004165396.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 735 bits (1897), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/648 (55%), Positives = 468/648 (72%), Gaps = 17/648 (2%)
Query: 3 VSSLPPRLNRIYRSSTINQWNSQIREAVNKNEAHKTLLLFRQMKQNDIEPNNLTFPFIAK 62
+S+L LN + ST+ WNS IR AVN+ A K L LF Q+K N ++PNN TFPF++K
Sbjct: 1 MSTLTQHLNCFSKLSTLTWWNSSIRGAVNQGNASKALALFHQLKLNGLQPNNFTFPFLSK 60
Query: 63 ACAKLSDLIYSQMIHGHIVKSPF--------------VKCDRLDCAYKIFDEMAVRDVAS 108
ACAKLS L SQ+IH H+VKSPF VKC ++D AY +FD+M VR++AS
Sbjct: 61 ACAKLSHLTNSQIIHTHVVKSPFYSDIYVQTAMVDMYVKCGKVDDAYNLFDKMPVRNIAS 120
Query: 109 WNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGI 168
WNAM++GF+Q+G L+ V LF MRLVG + D TV+GLT+A I AK L LK+VH+ GI
Sbjct: 121 WNAMIIGFSQIGSLDRVFNLFMGMRLVGTRPDAATVIGLTRAVISAKSLRFLKAVHAIGI 180
Query: 169 HIGVDADVSVCNTWISSYAKCDDLKMAELVFCGIEERLRTVVSWNSMVAGCTYGDKFDDS 228
G+DAD SV NTWI++Y+KC +L++A++VF GI++ R+ VSWNS++A + K+ D+
Sbjct: 181 ETGLDADTSVSNTWIAAYSKCGELQLAKMVFHGIQKTARSSVSWNSLIACYAHFGKYVDA 240
Query: 229 LNFYRHMMYNGFRLDVTTVVSLLSSFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISM 288
+ Y+ ++ +GF+ D +T++SLLSS PEAL+ G L+H HG G D D+S+INTLISM
Sbjct: 241 VKSYKGLLCDGFKPDASTIISLLSSCQQPEALIYGFLIHGHGFQLGCDSDISLINTLISM 300
Query: 289 YSKCGDIDSARVLFDGICDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTV 348
YS+CGDI SA +LFDG+ RT VSWTAMISGY++ G +D+AL LF AME GE PD+VTV
Sbjct: 301 YSRCGDISSATILFDGMSIRTCVSWTAMISGYSEVGRVDDALVLFNAMEETGEKPDIVTV 360
Query: 349 LSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE 408
LS+ISGCG++GAL LG W DNYA LK +V+VCNALIDMY+KCGS+ DARE+FY+LP
Sbjct: 361 LSLISGCGKTGALGLGHWIDNYASLHELKKDVVVCNALIDMYAKCGSLNDAREIFYSLPN 420
Query: 409 KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAI 468
+ VVSWT MIA CALNGEF EALDLF L E + PN +TFLAVLQAC H G+LEKG
Sbjct: 421 RTVVSWTAMIAACALNGEFREALDLFSLLSESGIEPNNITFLAVLQACCHGGYLEKGREC 480
Query: 469 SIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKI 528
++ + GI NP LDHYSCM DLLGRKGKL EAL+ +Q MP+K D GIWG LL ACKI
Sbjct: 481 FMMMTERYGI--NPGLDHYSCMIDLLGRKGKLIEALEVIQDMPMKPDEGIWGALLGACKI 538
Query: 529 HLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRNQVKKFPGQS 588
H N+EIGEYV+ LF+L+P A +VEMAN YA GRWD VA +R M+ NQ++K PG+S
Sbjct: 539 HNNMEIGEYVSRYLFELQPRVAVSFVEMANIYASVGRWDEVAAMRKTMRSNQMRKSPGKS 598
Query: 589 LFHINGKTCTFTAEDRYHAESELTYPVLDCLALHSREEAYSSHL-KWI 635
+ +NG + F EDR H +S L Y L LA+ +++ +SSH +W+
Sbjct: 599 VVQVNGMSHVFFVEDRSHHDSLLIYEALGNLAMQMKQKEFSSHAQRWV 646
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297804224|ref|XP_002869996.1| putative protein [Arabidopsis lyrata subsp. lyrata] gi|297315832|gb|EFH46255.1| putative protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 696 bits (1796), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/626 (56%), Positives = 437/626 (69%), Gaps = 19/626 (3%)
Query: 17 STINQWNSQIREAVNKNEAHKTLLLFRQMKQNDIEPNNLTFPFIAKACAKLSDLIYSQMI 76
S++N WN Q+REAVN+N+ ++LLLFR+MK+ EPNN TFPF+AKACA+L+ + Y +M+
Sbjct: 611 SSVNAWNFQVREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACARLAYIGYCEMV 670
Query: 77 HGHIVKSPF--------------VKCDRLDCAYKIFDEMAVRDVASWNAMLVGFAQMGFL 122
H H++KSPF VKCD LD A K+F+ M VRD +WNAML GF Q G
Sbjct: 671 HTHLIKSPFWSDVFVGTATVDMFVKCDSLDYAAKVFERMPVRDATTWNAMLSGFCQSGHT 730
Query: 123 ENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTW 182
+ V LF MRL I D VTVM L Q+A K L LLK +H+FGI +GVD +V NTW
Sbjct: 731 DKVFSLFREMRLDEIPPDSVTVMTLIQSASFEKSLKLLKVMHAFGIRLGVDLQATVSNTW 790
Query: 183 ISSYAKCDDLKMAELVFCGIEERLRTVVSWNSMV-AGCTYGDKFDDSLNFYRHMMYNGFR 241
IS+Y KC DL A+LVF I+ RTVVSWNS+ A +G+ FD + YR M+ + F+
Sbjct: 791 ISAYGKCGDLDSAKLVFEAIDRGDRTVVSWNSVFKAFAVFGEAFD-AFGHYRLMLRDEFK 849
Query: 242 LDVTTVVSLLSSFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVL 301
D++T ++L +S P+ L QGRL+HSH IH G D D+ INT ISMYSK GD SAR+L
Sbjct: 850 PDLSTFINLAASCQNPQTLTQGRLIHSHAIHLGTDQDIEAINTFISMYSKSGDSCSARLL 909
Query: 302 FDGICDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGAL 361
FD + RT VSWT MISGYA+KGD+DEAL LF AM G PDLVT+LS+ISGCG+ G+L
Sbjct: 910 FDIMPSRTCVSWTVMISGYAEKGDMDEALALFHAMAKTGVNPDLVTLLSLISGCGKFGSL 969
Query: 362 ELGKWFDNYA-CSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKIVVSWTTMIAG 420
E+GKW D A G KDNVMVCNALIDMYSKCGSI +AR++F EK +V+WTTMIAG
Sbjct: 970 EIGKWIDGRADMYGCKKDNVMVCNALIDMYSKCGSIDEARDIFDNTSEKTMVTWTTMIAG 1029
Query: 421 CALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISY 480
ALNG F+EA++LF ++++LD +PN +TFLAVLQAC H+G LEKGW I IS
Sbjct: 1030 YALNGIFLEAMELFSKMIDLDYKPNHITFLAVLQACAHSGSLEKGWEYFHIMKQVYNIS- 1088
Query: 481 NPELDHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHLNIEIGEYVAY 540
P LDHYSCM DLLGRKGKL EAL+ + +M K DAGIWG LL ACKIH N++I E A
Sbjct: 1089 -PGLDHYSCMVDLLGRKGKLDEALELIHNMSAKPDAGIWGALLSACKIHRNVKIAEQAAD 1147
Query: 541 CLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRNQVKKFPGQSLFHINGKTCTFT 600
LF LEP AAPYVEM+N YA G WDG A IR+MMK +KK+PG+S+ +NGK TFT
Sbjct: 1148 SLFNLEPQMAAPYVEMSNIYAAAGMWDGFARIRSMMKLWNIKKYPGESVIQVNGKNHTFT 1207
Query: 601 AEDRYHAESELTYPVLDCLALHSREE 626
+R H E+E Y L+ L+L +R+E
Sbjct: 1208 VGERGHMENEAIYSTLNGLSLFARDE 1233
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356528513|ref|XP_003532847.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 693 bits (1789), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/636 (55%), Positives = 446/636 (70%), Gaps = 18/636 (2%)
Query: 13 IYRSSTINQWNSQIREAVNKNEAHKTLLLFRQMKQNDIEPNNLTFPFIAKACAKLSDLIY 72
I R ST+ WNS R VN+ A L+LFRQMKQ+ I PNN TFPF+ KACAKLS L
Sbjct: 12 INRFSTLFTWNSNFRHLVNQGHAQNALILFRQMKQSGITPNNSTFPFVLKACAKLSHLRN 71
Query: 73 SQMIHGHIVKSPF--------------VKCDRLDCAYKIFDEMAVRDVASWNAMLVGFAQ 118
SQ+IH H++KS F VKC RL+ A+ +F EM VRD+ASWNAML+GFAQ
Sbjct: 72 SQIIHAHVLKSCFQSNIFVQTATVDMYVKCGRLEDAHNVFVEMPVRDIASWNAMLLGFAQ 131
Query: 119 MGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSV 178
GFL+ + L +MRL GI+ D VTV+ L + + K L+ L +V+SFGI IGV DVSV
Sbjct: 132 SGFLDRLSCLLRHMRLSGIRPDAVTVLLLIDSILRVKSLTSLGAVYSFGIRIGVHMDVSV 191
Query: 179 CNTWISSYAKCDDLKMAELVFCGIEERLRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYN 238
NT I++Y+KC +L AE +F I LR+VVSWNSM+A +K ++N Y+ M+
Sbjct: 192 ANTLIAAYSKCGNLCSAETLFDEINSGLRSVVSWNSMIAAYANFEKHVKAVNCYKGMLDG 251
Query: 239 GFRLDVTTVVSLLSSFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSA 298
GF D++T+++LLSS + P+AL G LVHSHG+ G D DV V+NTLI MYSKCGD+ SA
Sbjct: 252 GFSPDISTILNLLSSCMQPKALFHGLLVHSHGVKLGCDSDVCVVNTLICMYSKCGDVHSA 311
Query: 299 RVLFDGICDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQS 358
R LF+G+ D+T VSWT MIS YA+KG + EA+ LF AMEAAGE PDLVTVL++ISGCGQ+
Sbjct: 312 RFLFNGMSDKTCVSWTVMISAYAEKGYMSEAMTLFNAMEAAGEKPDLVTVLALISGCGQT 371
Query: 359 GALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKIVVSWTTMI 418
GALELGKW DNY+ + GLKDNV+VCNALIDMY+KCG DA+ELFY + + VVSWTTMI
Sbjct: 372 GALELGKWIDNYSINNGLKDNVVVCNALIDMYAKCGGFNDAKELFYTMANRTVVSWTTMI 431
Query: 419 AGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGI 478
CALNG+ +AL+LF ++E+ ++PN +TFLAVLQAC H G +E+G + GI
Sbjct: 432 TACALNGDVKDALELFFMMLEMGMKPNHITFLAVLQACAHGGLVERGLECFNMMTQKYGI 491
Query: 479 SYNPELDHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHLNIEIGEYV 538
NP +DHYSCM DLLGRKG L+EAL+ ++SMP + D+GIW LL ACK+H +E+G+YV
Sbjct: 492 --NPGIDHYSCMVDLLGRKGHLREALEIIKSMPFEPDSGIWSALLSACKLHGKMEMGKYV 549
Query: 539 AYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRNQVKKFPGQSLFHINGKTCT 598
+ LF+LEP A PYVEMAN YA W+GVA IR MK QV+K PGQS+ +NGK
Sbjct: 550 SEQLFELEPQVAVPYVEMANIYASAEMWEGVAAIRRNMKYLQVRKSPGQSIIQVNGKPTI 609
Query: 599 FTAEDRYHAESELTYPVLDCLALHSREE--AYSSHL 632
FT EDR H E+ Y +LD L S++ AYS +
Sbjct: 610 FTVEDRDHPETLYIYDMLDGLTSRSKKGLLAYSEEI 645
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|2828294|emb|CAA16708.1| putatative protein [Arabidopsis thaliana] gi|7268714|emb|CAB78921.1| putatative protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 692 bits (1785), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/634 (55%), Positives = 441/634 (69%), Gaps = 19/634 (2%)
Query: 9 RLNRIYRSSTINQWNSQIREAVNKNEAHKTLLLFRQMKQNDIEPNNLTFPFIAKACAKLS 68
RL RI S++N WN QIREAVN+N+ ++LLLFR+MK+ EPNN TFPF+AKACA+L+
Sbjct: 613 RLYRISGLSSVNAWNLQIREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACARLA 672
Query: 69 DLIYSQMIHGHIVKSPF--------------VKCDRLDCAYKIFDEMAVRDVASWNAMLV 114
D+ +M+H H++KSPF VKC+ +D A K+F+ M RD +WNAML
Sbjct: 673 DVGCCEMVHAHLIKSPFWSDVFVGTATVDMFVKCNSVDYAAKVFERMPERDATTWNAMLS 732
Query: 115 GFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDA 174
GF Q G + LF MRL I D VTVM L Q+A K L LL+++H+ GI +GVD
Sbjct: 733 GFCQSGHTDKAFSLFREMRLNEITPDSVTVMTLIQSASFEKSLKLLEAMHAVGIRLGVDV 792
Query: 175 DVSVCNTWISSYAKCDDLKMAELVFCGIEERLRTVVSWNSMV-AGCTYGDKFDDSLNFYR 233
V+V NTWIS+Y KC DL A+LVF I+ RTVVSWNSM A +G+ FD + Y
Sbjct: 793 QVTVANTWISTYGKCGDLDSAKLVFEAIDRGDRTVVSWNSMFKAYSVFGEAFD-AFGLYC 851
Query: 234 HMMYNGFRLDVTTVVSLLSSFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCG 293
M+ F+ D++T ++L +S PE L QGRL+HSH IH G D D+ INT ISMYSK
Sbjct: 852 LMLREEFKPDLSTFINLAASCQNPETLTQGRLIHSHAIHLGTDQDIEAINTFISMYSKSE 911
Query: 294 DIDSARVLFDGICDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMIS 353
D SAR+LFD + RT VSWT MISGYA+KGD+DEAL LF AM +GE PDLVT+LS+IS
Sbjct: 912 DTCSARLLFDIMTSRTCVSWTVMISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLSLIS 971
Query: 354 GCGQSGALELGKWFDNYA-CSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKIVV 412
GCG+ G+LE GKW D A G +DNVM+CNALIDMYSKCGSI +AR++F PEK VV
Sbjct: 972 GCGKFGSLETGKWIDARADIYGCKRDNVMICNALIDMYSKCGSIHEARDIFDNTPEKTVV 1031
Query: 413 SWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQ 472
+WTTMIAG ALNG F+EAL LF ++++LD +PN +TFLAVLQAC H+G LEKGW I
Sbjct: 1032 TWTTMIAGYALNGIFLEALKLFSKMIDLDYKPNHITFLAVLQACAHSGSLEKGWEYFHIM 1091
Query: 473 YDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHLNI 532
IS P LDHYSCM DLLGRKGKL+EAL+ +++M K DAGIWG LL ACKIH N+
Sbjct: 1092 KQVYNIS--PGLDHYSCMVDLLGRKGKLEEALELIRNMSAKPDAGIWGALLNACKIHRNV 1149
Query: 533 EIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRNQVKKFPGQSLFHI 592
+I E A LF LEP AAPYVEMAN YA G WDG A IR++MK+ +KK+PG+S+ +
Sbjct: 1150 KIAEQAAESLFNLEPQMAAPYVEMANIYAAAGMWDGFARIRSIMKQRNIKKYPGESVIQV 1209
Query: 593 NGKTCTFTAEDRYHAESELTYPVLDCLALHSREE 626
NGK +FT + H E+E+ Y L+ L+L ++++
Sbjct: 1210 NGKNHSFTVGEHGHVENEVIYFTLNGLSLFAKDK 1243
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|186512044|ref|NP_001119013.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|223635616|sp|P0C8Q2.1|PP323_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g19191, mitochondrial; Flags: Precursor gi|332658758|gb|AEE84158.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 689 bits (1777), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/634 (55%), Positives = 441/634 (69%), Gaps = 19/634 (2%)
Query: 9 RLNRIYRSSTINQWNSQIREAVNKNEAHKTLLLFRQMKQNDIEPNNLTFPFIAKACAKLS 68
RL RI S++N WN QIREAVN+N+ ++LLLFR+MK+ EPNN TFPF+AKACA+L+
Sbjct: 7 RLYRISGLSSVNAWNLQIREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACARLA 66
Query: 69 DLIYSQMIHGHIVKSPF--------------VKCDRLDCAYKIFDEMAVRDVASWNAMLV 114
D+ +M+H H++KSPF VKC+ +D A K+F+ M RD +WNAML
Sbjct: 67 DVGCCEMVHAHLIKSPFWSDVFVGTATVDMFVKCNSVDYAAKVFERMPERDATTWNAMLS 126
Query: 115 GFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDA 174
GF Q G + LF MRL I D VTVM L Q+A K L LL+++H+ GI +GVD
Sbjct: 127 GFCQSGHTDKAFSLFREMRLNEITPDSVTVMTLIQSASFEKSLKLLEAMHAVGIRLGVDV 186
Query: 175 DVSVCNTWISSYAKCDDLKMAELVFCGIEERLRTVVSWNSMV-AGCTYGDKFDDSLNFYR 233
V+V NTWIS+Y KC DL A+LVF I+ RTVVSWNSM A +G+ FD + Y
Sbjct: 187 QVTVANTWISTYGKCGDLDSAKLVFEAIDRGDRTVVSWNSMFKAYSVFGEAFD-AFGLYC 245
Query: 234 HMMYNGFRLDVTTVVSLLSSFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCG 293
M+ F+ D++T ++L +S PE L QGRL+HSH IH G D D+ INT ISMYSK
Sbjct: 246 LMLREEFKPDLSTFINLAASCQNPETLTQGRLIHSHAIHLGTDQDIEAINTFISMYSKSE 305
Query: 294 DIDSARVLFDGICDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMIS 353
D SAR+LFD + RT VSWT MISGYA+KGD+DEAL LF AM +GE PDLVT+LS+IS
Sbjct: 306 DTCSARLLFDIMTSRTCVSWTVMISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLSLIS 365
Query: 354 GCGQSGALELGKWFDNYA-CSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKIVV 412
GCG+ G+LE GKW D A G +DNVM+CNALIDMYSKCGSI +AR++F PEK VV
Sbjct: 366 GCGKFGSLETGKWIDARADIYGCKRDNVMICNALIDMYSKCGSIHEARDIFDNTPEKTVV 425
Query: 413 SWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQ 472
+WTTMIAG ALNG F+EAL LF ++++LD +PN +TFLAVLQAC H+G LEKGW I
Sbjct: 426 TWTTMIAGYALNGIFLEALKLFSKMIDLDYKPNHITFLAVLQACAHSGSLEKGWEYFHIM 485
Query: 473 YDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHLNI 532
IS P LDHYSCM DLLGRKGKL+EAL+ +++M K DAGIWG LL ACKIH N+
Sbjct: 486 KQVYNIS--PGLDHYSCMVDLLGRKGKLEEALELIRNMSAKPDAGIWGALLNACKIHRNV 543
Query: 533 EIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRNQVKKFPGQSLFHI 592
+I E A LF LEP AAPYVEMAN YA G WDG A IR++MK+ +KK+PG+S+ +
Sbjct: 544 KIAEQAAESLFNLEPQMAAPYVEMANIYAAAGMWDGFARIRSIMKQRNIKKYPGESVIQV 603
Query: 593 NGKTCTFTAEDRYHAESELTYPVLDCLALHSREE 626
NGK +FT + H E+E+ Y L+ L+L ++++
Sbjct: 604 NGKNHSFTVGEHGHVENEVIYFTLNGLSLFAKDK 637
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255582516|ref|XP_002532043.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223528286|gb|EEF30333.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 550 bits (1418), Expect = e-154, Method: Compositional matrix adjust.
Identities = 276/442 (62%), Positives = 338/442 (76%), Gaps = 14/442 (3%)
Query: 18 TINQWNSQIREAVNKNEAHKTLLLFRQMKQNDIEPNNLTFPFIAKACAKLSDLIYSQMIH 77
TIN +NSQIREAVN+N AHK + LFRQ+KQ IEPNN TFPFI KACAKLS+L YSQ+IH
Sbjct: 2 TINLFNSQIREAVNQNCAHKAISLFRQLKQKGIEPNNFTFPFILKACAKLSNLHYSQVIH 61
Query: 78 GHIVKSPF--------------VKCDRLDCAYKIFDEMAVRDVASWNAMLVGFAQMGFLE 123
H++KSPF VKC +LD AY +F +M RDV SWNAML+GFAQ+GF E
Sbjct: 62 THVIKSPFYSNVFVQTALLDMCVKCHQLDIAYNVFVKMPKRDVTSWNAMLLGFAQLGFSE 121
Query: 124 NVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWI 183
V +F MR G+ D VT+MG++ A K L L KSVHSFGI IG+ DVSV NTWI
Sbjct: 122 RVFCMFREMRFAGVFPDSVTLMGVSGAISCMKDLELAKSVHSFGIRIGIHNDVSVANTWI 181
Query: 184 SSYAKCDDLKMAELVFCGIEERLRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLD 243
S YAKC DL MAE VF GIE LR+VVSWNSM+AG Y +K D+LN Y+ M+++GF D
Sbjct: 182 SLYAKCYDLAMAESVFNGIEVGLRSVVSWNSMIAGYAYLEKRIDALNSYKRMLHDGFMPD 241
Query: 244 VTTVVSLLSSFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFD 303
++T+V+LLSS + PEA+ QG VHSHGI +G D ++ V NTLISMYSK GD+ SAR LFD
Sbjct: 242 ISTIVTLLSSCLQPEAVRQGMQVHSHGIRFGCDSEIHVANTLISMYSKFGDVYSARCLFD 301
Query: 304 GICDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALEL 363
+C+R+ V+WT+MISGYA+KG++DEAL+LF AMEAAGE PDLVTVLS+ISGCGQ+G LE+
Sbjct: 302 SMCNRSCVTWTSMISGYAEKGNMDEALKLFNAMEAAGEKPDLVTVLSVISGCGQTGILEV 361
Query: 364 GKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKIVVSWTTMIAGCAL 423
GKW YA S LK NV+VCNALIDMY+KCGSI DA +LF +P++ VV+WTTMIAGCAL
Sbjct: 362 GKWIHVYADSNCLKHNVVVCNALIDMYAKCGSIDDAWDLFNTMPDRTVVTWTTMIAGCAL 421
Query: 424 NGEFVEALDLFHQLMELDLRPN 445
NG F E+LDLF+Q+++ L+PN
Sbjct: 422 NGLFKESLDLFYQMIDFGLKPN 443
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis] | Back alignment and taxonomy information |
|---|
Score = 430 bits (1106), Expect = e-117, Method: Compositional matrix adjust.
Identities = 230/623 (36%), Positives = 352/623 (56%), Gaps = 22/623 (3%)
Query: 22 WNSQIREAVNKNEAHKTLLLFRQMKQNDIEPNNLTFPFIAKACAKLSDLIYSQMIH---- 77
W I V +K L L+ QM++ I P+ L F + KAC SDL + +H
Sbjct: 88 WKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRKVHEDII 147
Query: 78 ----------GHIVKSPFVKCDRLDCAYKIFDEMAVRDVASWNAMLVGFAQMGFLENVLR 127
G + S + KC L+ A ++FD M RDV SWNA++ G++Q G L
Sbjct: 148 ARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPYEALA 207
Query: 128 LFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISSYA 187
LF M++ GI+ + T++ + H L K +H + I G+++DV V N ++ YA
Sbjct: 208 LFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGLVNMYA 267
Query: 188 KCDDLKMAELVFCGIEERL--RTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVT 245
KC ++ A +F ER+ R V SWN+++ G + + ++L F+ M G + +
Sbjct: 268 KCGNVNTAHKLF----ERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSI 323
Query: 246 TVVSLLSSFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGI 305
T+VS+L + AL QG+ +H + I GF+ + V N L++MY+KCG+++SA LF+ +
Sbjct: 324 TMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFERM 383
Query: 306 CDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGK 365
+ V+W A+ISGY+Q G EAL LF M+A G PD ++S++ C ALE GK
Sbjct: 384 PKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQGK 443
Query: 366 WFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKIVVSWTTMIAGCALNG 425
Y G + NV+V L+D+Y+KCG++ A++LF +PE+ VVSWTTMI ++G
Sbjct: 444 QIHGYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLFERMPEQDVVSWTTMILAYGIHG 503
Query: 426 EFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELD 485
+AL LF ++ E + + + F A+L AC+H G +++G D G++ P+L+
Sbjct: 504 HGEDALALFSKMQETGTKLDHIAFTAILTACSHAGLVDQGLQYFQCMKSDYGLA--PKLE 561
Query: 486 HYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKL 545
HY+C+ DLLGR G L EA +++M ++ DA +WG LL AC+IH NIE+GE A LF+L
Sbjct: 562 HYACLVDLLGRAGHLDEANGIIKNMSLEPDANVWGALLGACRIHCNIELGEQAAKHLFEL 621
Query: 546 EPHSAAPYVEMANKYALGGRWDGVANIRTMMKRNQVKKFPGQSLFHINGKTCTFTAEDRY 605
+P +A YV ++N YA RW+ VA +R MMK VKK PG S+ ++ TF DR
Sbjct: 622 DPDNAGYYVLLSNIYAEAQRWEDVAKLRKMMKEKGVKKQPGCSVVAVHRDVQTFLVGDRT 681
Query: 606 HAESELTYPVLDCLALHSREEAY 628
H +SE Y +L+ L R+ Y
Sbjct: 682 HPQSEQIYAMLEILYEQMRKAGY 704
|
Source: Picea sitchensis Species: Picea sitchensis Genus: Picea Family: Pinaceae Order: Coniferales Class: Coniferopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 215/641 (33%), Positives = 349/641 (54%), Gaps = 23/641 (3%)
Query: 10 LNRIYRSSTINQWNSQIREAVNKNEAHKTLLLFRQMKQNDIEPNNLTFPFIAKACAKLSD 69
+ I + + WN + E + +++ LF++M++ I N+ TF I K A L
Sbjct: 509 FDHILSDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQKLGITGNSYTFSCILKCFATLGR 568
Query: 70 LIYSQMIHGHIVK--------------SPFVKCDRLDCAYKIFDEMAVRDVASWNAMLVG 115
+ + IHG + K + + K +D A+K+FDE+ RDV SWN+M+ G
Sbjct: 569 VGECKRIHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLFDELGDRDVVSWNSMISG 628
Query: 116 FAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDAD 175
GF + L F M ++ + D T++ A + LSL +++H G+ +
Sbjct: 629 CVMNGFSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLSLGRALHGQGVKACFSRE 688
Query: 176 VSVCNTWISSYAKCDDLKMAELVFCGIEERLRTVVSWNSMVAGCTYGDKFDDSLNFYRHM 235
V NT + Y+KC +L A F + ++ TVVSW S++A +DD++ + M
Sbjct: 689 VMFNNTLLDMYSKCGNLNDAIQAFEKMGQK--TVVSWTSLIAAYVREGLYDDAIRLFYEM 746
Query: 236 MYNGFRLDVTTVVSLLSSFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDI 295
G DV ++ S+L + C +L +GR VH++ L + V N L+ MY+KCG +
Sbjct: 747 ESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIRKNNMALCLPVSNALMDMYAKCGSM 806
Query: 296 DSARVLFDGICDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGC 355
+ A ++F I + VSW MI GY++ +EAL+LF M+ PD +T+ ++ C
Sbjct: 807 EEAYLVFSQIPVKDIVSWNTMIGGYSKNSLPNEALKLFAEMQKESR-PDGITMACLLPAC 865
Query: 356 GQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKIVVSWT 415
G ALE+G+ G + V NALIDMY KCGS+ AR LF +PEK +++WT
Sbjct: 866 GSLAALEIGRGIHGCILRNGYSSELHVANALIDMYVKCGSLVHARLLFDMIPEKDLITWT 925
Query: 416 TMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAI--SIIQY 473
MI+GC ++G EA+ F ++ ++P+ +TF ++L AC+H+G L +GW S+I
Sbjct: 926 VMISGCGMHGLGNEAIATFQKMRIAGIKPDEITFTSILYACSHSGLLNEGWGFFNSMISE 985
Query: 474 DDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHLNIE 533
+ P+L+HY+CM DLL R G L +A + +++MPIK DA IWG LLC C+IH ++E
Sbjct: 986 ----CNMEPKLEHYACMVDLLARTGNLSKAYNLIETMPIKPDATIWGALLCGCRIHHDVE 1041
Query: 534 IGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRNQVKKFPGQSLFHIN 593
+ E VA +F+LEP +A YV +AN YA +W+ V +R + + +KK PG S +
Sbjct: 1042 LAEKVAEHVFELEPDNAGYYVLLANIYAEAEKWEEVKKLRERIGKRGLKKSPGCSWIEVQ 1101
Query: 594 GKTCTFTAEDRYHAESELTYPVLDCLALHSREEAYSSHLKW 634
GK TF + D H +++ + +L+ L + + E +S +++
Sbjct: 1102 GKFTTFVSADTAHPQAKSIFSLLNNLRIKMKNEGHSPKMRY 1142
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 641 | ||||||
| TAIR|locus:4515103421 | 654 | AT4G19191 "AT4G19191" [Arabido | 0.968 | 0.949 | 0.543 | 1.4e-176 | |
| TAIR|locus:2202074 | 809 | CRR22 "CHLORORESPIRATORY REDUC | 0.937 | 0.742 | 0.324 | 2.1e-93 | |
| TAIR|locus:2124137 | 871 | DOT4 "DEFECTIVELY ORGANIZED TR | 0.948 | 0.698 | 0.319 | 6.5e-90 | |
| TAIR|locus:2125899 | 990 | AT4G33170 [Arabidopsis thalian | 0.937 | 0.607 | 0.325 | 1.7e-88 | |
| TAIR|locus:505006130 | 970 | AT1G18485 [Arabidopsis thalian | 0.823 | 0.544 | 0.321 | 1.3e-86 | |
| TAIR|locus:2141171 | 857 | AT4G21300 [Arabidopsis thalian | 0.978 | 0.731 | 0.303 | 1.4e-85 | |
| TAIR|locus:2103483 | 890 | OTP84 "ORGANELLE TRANSCRIPT PR | 0.839 | 0.604 | 0.318 | 2.4e-85 | |
| TAIR|locus:2119440 | 1064 | AT4G13650 [Arabidopsis thalian | 0.939 | 0.565 | 0.327 | 8e-85 | |
| TAIR|locus:2181201 | 691 | AT5G27110 [Arabidopsis thalian | 0.931 | 0.863 | 0.335 | 2.4e-83 | |
| TAIR|locus:2054131 | 697 | SLO2 "AT2G13600" [Arabidopsis | 0.531 | 0.489 | 0.378 | 3.1e-83 |
| TAIR|locus:4515103421 AT4G19191 "AT4G19191" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1715 (608.8 bits), Expect = 1.4e-176, P = 1.4e-176
Identities = 348/640 (54%), Positives = 436/640 (68%)
Query: 3 VSSLPPRLNRIYRSSTINQWNSQIREAVNKNEAHKTLLLFRQMKQNDIEPNNLTFPFIAK 62
+S + RL RI S++N WN QIREAVN+N+ ++LLLFR+MK+ EPNN TFPF+AK
Sbjct: 1 MSLIHRRLYRISGLSSVNAWNLQIREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAK 60
Query: 63 ACAKLSDLIYSQMIHGHIVKSPF--------------VKCDRLDCAYKIFDEMAVRDVAS 108
ACA+L+D+ +M+H H++KSPF VKC+ +D A K+F+ M RD +
Sbjct: 61 ACARLADVGCCEMVHAHLIKSPFWSDVFVGTATVDMFVKCNSVDYAAKVFERMPERDATT 120
Query: 109 WNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGI 168
WNAML GF Q G + LF MRL I D VTVM L Q+A K L LL+++H+ GI
Sbjct: 121 WNAMLSGFCQSGHTDKAFSLFREMRLNEITPDSVTVMTLIQSASFEKSLKLLEAMHAVGI 180
Query: 169 HIGVDADVSVCNTWISSYAKCDDLKMAELVFCGIEERLRTVVSWNSMV-AGCTYGDKFDD 227
+GVD V+V NTWIS+Y KC DL A+LVF I+ RTVVSWNSM A +G+ FD
Sbjct: 181 RLGVDVQVTVANTWISTYGKCGDLDSAKLVFEAIDRGDRTVVSWNSMFKAYSVFGEAFD- 239
Query: 228 SLNFYRHMMYNGFRLDXXXXXXXXXXFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLIS 287
+ Y M+ F+ D PE L QGRL+HSH IH G D D+ INT IS
Sbjct: 240 AFGLYCLMLREEFKPDLSTFINLAASCQNPETLTQGRLIHSHAIHLGTDQDIEAINTFIS 299
Query: 288 MYSKCGDIDSARVLFDGICDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVT 347
MYSK D SAR+LFD + RT VSWT MISGYA+KGD+DEAL LF AM +GE PDLVT
Sbjct: 300 MYSKSEDTCSARLLFDIMTSRTCVSWTVMISGYAEKGDMDEALALFHAMIKSGEKPDLVT 359
Query: 348 VLSMISGCGQSGALELGKWFDNYACSGGLK-DNVMVCNALIDMYSKCGSIGDARELFYAL 406
+LS+ISGCG+ G+LE GKW D A G K DNVM+CNALIDMYSKCGSI +AR++F
Sbjct: 360 LLSLISGCGKFGSLETGKWIDARADIYGCKRDNVMICNALIDMYSKCGSIHEARDIFDNT 419
Query: 407 PEKIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGW 466
PEK VV+WTTMIAG ALNG F+EAL LF ++++LD +PN +TFLAVLQAC H+G LEKGW
Sbjct: 420 PEKTVVTWTTMIAGYALNGIFLEALKLFSKMIDLDYKPNHITFLAVLQACAHSGSLEKGW 479
Query: 467 AISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCAC 526
I IS P LDHYSCM DLLGRKGKL+EAL+ +++M K DAGIWG LL AC
Sbjct: 480 EYFHIMKQVYNIS--PGLDHYSCMVDLLGRKGKLEEALELIRNMSAKPDAGIWGALLNAC 537
Query: 527 KIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRNQVKKFPG 586
KIH N++I E A LF LEP AAPYVEMAN YA G WDG A IR++MK+ +KK+PG
Sbjct: 538 KIHRNVKIAEQAAESLFNLEPQMAAPYVEMANIYAAAGMWDGFARIRSIMKQRNIKKYPG 597
Query: 587 QSLFHINGKTCTFTAEDRYHAESELTYPVLDCLALHSREE 626
+S+ +NGK +FT + H E+E+ Y L+ L+L ++++
Sbjct: 598 ESVIQVNGKNHSFTVGEHGHVENEVIYFTLNGLSLFAKDK 637
|
|
| TAIR|locus:2202074 CRR22 "CHLORORESPIRATORY REDUCTION22" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 930 (332.4 bits), Expect = 2.1e-93, P = 2.1e-93
Identities = 202/623 (32%), Positives = 324/623 (52%)
Query: 22 WNSQIREAVNKNEAHKTLLLFRQMKQNDIEPNNLTFPFIAKACAKLSDLIYSQMIHGHIV 81
+++ ++ ++ K L F +M+ +D+EP F ++ K C ++L + IHG +V
Sbjct: 103 YHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLV 162
Query: 82 KSPF--------------VKCDRLDCAYKIFDEMAVRDVASWNAMLVGFAQMGFLENVLR 127
KS F KC +++ A K+FD M RD+ SWN ++ G++Q G L
Sbjct: 163 KSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALE 222
Query: 128 LFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISSYA 187
+ +M ++ F+T++ + A + +S+ K +H + + G D+ V++ + YA
Sbjct: 223 MVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYA 282
Query: 188 KCDDLKMAELVFCGIEERLRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDXXXX 247
KC L+ A +F G+ ER VVSWNSM+ + +++ ++ M+ G +
Sbjct: 283 KCGSLETARQLFDGMLER--NVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVK--PTDV 338
Query: 248 XXXXXXFVCPEA--LVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGI 305
C + L +GR +H + G D +VSV+N+LISMY KC ++D+A +F +
Sbjct: 339 SVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKL 398
Query: 306 CDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGK 365
RT VSW AMI G+AQ G +AL F M + PD T +S+I+ + K
Sbjct: 399 QSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAK 458
Query: 366 WFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKIVVSWTTMIAGCALNG 425
W L NV V AL+DMY+KCG+I AR +F + E+ V +W MI G +G
Sbjct: 459 WIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHG 518
Query: 426 EFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELD 485
AL+LF ++ + ++PN VTFL+V+ AC+H+G +E G + ++ I + +D
Sbjct: 519 FGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELS--MD 576
Query: 486 HYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKL 545
HY M DLLGR G+L EA DF+ MP+K ++G +L AC+IH N+ E A LF+L
Sbjct: 577 HYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFEL 636
Query: 546 EPHSAAPYVEMANKYALGGRWDGVANIRTMMKRNQVKKFPGQSLFHINGKTCTFTAEDRY 605
P +V +AN Y W+ V +R M R ++K PG S+ I + +F +
Sbjct: 637 NPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTA 696
Query: 606 HAESELTYPVLDCLALHSREEAY 628
H +S+ Y L+ L H +E Y
Sbjct: 697 HPDSKKIYAFLEKLICHIKEAGY 719
|
|
| TAIR|locus:2124137 DOT4 "DEFECTIVELY ORGANIZED TRIBUTARIES 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 897 (320.8 bits), Expect = 6.5e-90, P = 6.5e-90
Identities = 201/629 (31%), Positives = 331/629 (52%)
Query: 22 WNSQIREAVNKNEAHKTLLLFRQMKQNDIEPNNLTFPFIAKACAKLSDLIYSQMIHGHIV 81
WN + E + ++ LF++M + +E ++ TF ++K+ + L + + +HG I+
Sbjct: 163 WNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFIL 222
Query: 82 KSPF--------------VKCDRLDCAYKIFDEMAVRDVASWNAMLVGFAQMGFLENVLR 127
KS F +K R+D A K+FDEM RDV SWN+++ G+ G E L
Sbjct: 223 KSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLS 282
Query: 128 LFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISSYA 187
+F M + GI+ D T++ + ++ +SL ++VHS G+ + CNT + Y+
Sbjct: 283 VFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYS 342
Query: 188 KCDDLKMAELVFCGIEERLRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDXXXX 247
KC DL A+ VF + +R +VVS+ SM+AG +++ + M G D
Sbjct: 343 KCGDLDSAKAVFREMSDR--SVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTV 400
Query: 248 XXXXXXFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGICD 307
L +G+ VH D+ V N L+ MY+KCG + A ++F +
Sbjct: 401 TAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRV 460
Query: 308 RTRVSWTAMISGYAQKGDLDEALRLF-FAMEAAGELPDLVTVLSMISGCGQSGALELGKW 366
+ +SW +I GY++ +EAL LF +E PD TV ++ C A + G+
Sbjct: 461 KDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGRE 520
Query: 367 FDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKIVVSWTTMIAGCALNGE 426
Y G + V N+L+DMY+KCG++ A LF + K +VSWT MIAG ++G
Sbjct: 521 IHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGF 580
Query: 427 FVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAI-SIIQYDDKGISYNPELD 485
EA+ LF+Q+ + + + ++F+++L AC+H+G +++GW +I++++ K P ++
Sbjct: 581 GKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECK---IEPTVE 637
Query: 486 HYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKL 545
HY+C+ D+L R G L +A F+++MPI DA IWG LLC C+IH ++++ E VA +F+L
Sbjct: 638 HYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFEL 697
Query: 546 EPHSAAPYVEMANKYALGGRWDGVANIRTMMKRNQVKKFPGQSLFHINGKTCTFTAEDRY 605
EP + YV MAN YA +W+ V +R + + ++K PG S I G+ F A D
Sbjct: 698 EPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSS 757
Query: 606 HAESELTYPVLDCLALHSREEAYSSHLKW 634
+ E+E L + EE YS K+
Sbjct: 758 NPETENIEAFLRKVRARMIEEGYSPLTKY 786
|
|
| TAIR|locus:2125899 AT4G33170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 861 (308.1 bits), Expect = 1.7e-88, Sum P(2) = 1.7e-88
Identities = 202/621 (32%), Positives = 322/621 (51%)
Query: 23 NSQIREAVNKNEAHKTLLLFRQMKQNDIEPNNLTFPFIAKACAKLSDLIYSQMIHGHIVK 82
N + E ++ + L F M ++D+E + +TF + K+ L Q +H +K
Sbjct: 284 NKGLSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALK 343
Query: 83 --------------SPFVKCDRLDCAYKIFDEMAVRDVASWNAMLVGFAQMGFLENVLRL 128
+ + K + A +FD M+ RD+ SWN+++ G AQ G + L
Sbjct: 344 LGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCL 403
Query: 129 FYNMRLVGIQADFVTVMGLTQAAIHAKH-LSLLKSVHSFGIHIGVDADVSVCNTWISSYA 187
F + G++ D T+ + +AA LSL K VH I I +D V I +Y+
Sbjct: 404 FMQLLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYS 463
Query: 188 KCDDLKMAELVFCGIEERLRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDXXXX 247
+ +K AE++F E +V+WN+M+AG T +L + M G R D
Sbjct: 464 RNRCMKEAEILF---ERHNFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTL 520
Query: 248 XXXXXXFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGICD 307
A+ QG+ VH++ I G+DLD+ V + ++ MY KCGD+ +A+ FD I
Sbjct: 521 ATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPV 580
Query: 308 RTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWF 367
V+WT MISG + G+ + A +F M G LPD T+ ++ ALE G+
Sbjct: 581 PDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQI 640
Query: 368 DNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKIVVSWTTMIAGCALNGEF 427
A ++ V +L+DMY+KCGSI DA LF + + +W M+ G A +GE
Sbjct: 641 HANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEG 700
Query: 428 VEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHY 487
E L LF Q+ L ++P++VTF+ VL AC+H+G + + + + D GI PE++HY
Sbjct: 701 KETLQLFKQMKSLGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIK--PEIEHY 758
Query: 488 SCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEP 547
SC+AD LGR G +K+A + ++SM +++ A ++ TLL AC++ + E G+ VA L +LEP
Sbjct: 759 SCLADALGRAGLVKQAENLIESMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEP 818
Query: 548 HSAAPYVEMANKYALGGRWDGVANIRTMMKRNQVKKFPGQSLFHINGKTCTFTAEDRYHA 607
++ YV ++N YA +WD + RTMMK ++VKK PG S + K F +DR +
Sbjct: 819 LDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHIFVVDDRSNR 878
Query: 608 ESELTYPVLDCLALHSREEAY 628
++EL Y + + ++E Y
Sbjct: 879 QTELIYRKVKDMIRDIKQEGY 899
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| TAIR|locus:505006130 AT1G18485 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 743 (266.6 bits), Expect = 1.3e-86, Sum P(2) = 1.3e-86
Identities = 172/535 (32%), Positives = 275/535 (51%)
Query: 74 QMIHGHIVKSPFVKCDRLDCAYKIFDEMAVRDVASWNAMLVGFAQMGFLENVLRLFYNMR 133
+++ + + + KC + A IF ++V SWN M+ GF+ G + M
Sbjct: 326 ELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQML 385
Query: 134 LVG--IQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISSYAKCDD 191
G ++AD VT++ H L LK +H + + + V N +++SYAKC
Sbjct: 386 AGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGS 445
Query: 192 LKMAELVFCGIEERLRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDXXXXXXXX 251
L A+ VF GI R +TV SWN+++ G + SL+ + M +G D
Sbjct: 446 LSYAQRVFHGI--RSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLL 503
Query: 252 XXFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGICDRTRV 311
++L G+ VH I + D+ V +++S+Y CG++ + + LFD + D++ V
Sbjct: 504 SACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLV 563
Query: 312 SWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYA 371
SW +I+GY Q G D AL +F M G ++++ + C +L LG+ YA
Sbjct: 564 SWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYA 623
Query: 372 CSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKIVVSWTTMIAGCALNGEFVEAL 431
L+D+ + +LIDMY+K GSI + ++F L EK SW MI G ++G EA+
Sbjct: 624 LKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAI 683
Query: 432 DLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMA 491
LF ++ P+ +TFL VL AC H+G + +G + + P L HY+C+
Sbjct: 684 KLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEG--LRYLDQMKSSFGLKPNLKHYACVI 741
Query: 492 DLLGRKGKLKEALDFV-QSMPIKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSA 550
D+LGR G+L +AL V + M ++D GIW +LL +C+IH N+E+GE VA LF+LEP
Sbjct: 742 DMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKP 801
Query: 551 APYVEMANKYALGGRWDGVANIRTMMKRNQVKKFPGQSLFHINGKTCTFTAEDRY 605
YV ++N YA G+W+ V +R M ++K G S +N K +F +R+
Sbjct: 802 ENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNRKVFSFVVGERF 856
|
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| TAIR|locus:2141171 AT4G21300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 856 (306.4 bits), Expect = 1.4e-85, P = 1.4e-85
Identities = 197/649 (30%), Positives = 326/649 (50%)
Query: 6 LPPRL-NRIYRSSTINQWNSQIREAVNKNEAHKTLLLFRQMKQNDIEPNNLTFPFIAKAC 64
+P +L +R+ + + WN + + F M+ + I PN +TF + C
Sbjct: 191 VPSKLFDRVLQKDCVI-WNVMLNGYAKCGALDSVIKGFSVMRMDQISPNAVTFDCVLSVC 249
Query: 65 AKLSDLIYSQMIHGHIVKSP--------------FVKCDRLDCAYKIFDEMAVRDVASWN 110
A + +HG +V S + KC R D A K+F M+ D +WN
Sbjct: 250 ASKLLIDLGVQLHGLVVVSGVDFEGSIKNSLLSMYSKCGRFDDASKLFRMMSRADTVTWN 309
Query: 111 AMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHI 170
M+ G+ Q G +E L FY M G+ D +T L + ++L K +H + +
Sbjct: 310 CMISGYVQSGLMEESLTFFYEMISSGVLPDAITFSSLLPSVSKFENLEYCKQIHCYIMRH 369
Query: 171 GVDADVSVCNTWISSYAKCDDLKMAELVFCGIEERLRTVVSWNSMVAGCTYGDKFDDSLN 230
+ D+ + + I +Y KC + MA+ +F VV + +M++G + + DSL
Sbjct: 370 SISLDIFLTSALIDAYFKCRGVSMAQNIFSQCNSV--DVVVFTAMISGYLHNGLYIDSLE 427
Query: 231 FYRHMMYNGFRLDXXXXXXXXXXFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYS 290
+R ++ + AL GR +H I GFD ++ +I MY+
Sbjct: 428 MFRWLVKVKISPNEITLVSILPVIGILLALKLGRELHGFIIKKGFDNRCNIGCAVIDMYA 487
Query: 291 KCGDIDSARVLFDGICDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLS 350
KCG ++ A +F+ + R VSW +MI+ AQ + A+ +F M +G D V++ +
Sbjct: 488 KCGRMNLAYEIFERLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICYDCVSISA 547
Query: 351 MISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKI 410
+S C + GK + L +V + LIDMY+KCG++ A +F + EK
Sbjct: 548 ALSACANLPSESFGKAIHGFMIKHSLASDVYSESTLIDMYAKCGNLKAAMNVFKTMKEKN 607
Query: 411 VVSWTTMIAGCALNGEFVEALDLFHQLMELD-LRPNRVTFLAVLQACTHTGFLEKGWAIS 469
+VSW ++IA C +G+ ++L LFH+++E +RP+++TFL ++ +C H G +++G
Sbjct: 608 IVSWNSIIAACGNHGKLKDSLCLFHEMVEKSGIRPDQITFLEIISSCCHVGDVDEGVRFF 667
Query: 470 IIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIH 529
+D GI P+ +HY+C+ DL GR G+L EA + V+SMP DAG+WGTLL AC++H
Sbjct: 668 RSMTEDYGIQ--PQQEHYACVVDLFGRAGRLTEAYETVKSMPFPPDAGVWGTLLGACRLH 725
Query: 530 LNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRNQVKKFPGQSL 589
N+E+ E + L L+P ++ YV ++N +A W+ V +R++MK +V+K PG S
Sbjct: 726 KNVELAEVASSKLMDLDPSNSGYYVLISNAHANAREWESVTKVRSLMKEREVQKIPGYSW 785
Query: 590 FHINGKTCTFTAEDRYHAESELTYPVLDCLALHSREEAYSSHLKWIPEH 638
IN +T F + D H ES Y +L+ L R E Y ++P H
Sbjct: 786 IEINKRTHLFVSGDVNHPESSHIYSLLNSLLGELRLEGYIPQ-PYLPLH 833
|
|
| TAIR|locus:2103483 OTP84 "ORGANELLE TRANSCRIPT PROCESSING 84" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 737 (264.5 bits), Expect = 2.4e-85, Sum P(2) = 2.4e-85
Identities = 177/556 (31%), Positives = 277/556 (49%)
Query: 87 KCDRLDCAYKIFDEMAVRDVASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMG 146
K +L + + RD+ +WN +L Q L L M L G++ D T+
Sbjct: 248 KLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISS 307
Query: 147 LTQAAIHAKHLSLLKSVHSFGIHIG-VDADVSVCNTWISSYAKCDDLKMAELVFCGIEER 205
+ A H + L K +H++ + G +D + V + + Y C + VF G+ +R
Sbjct: 308 VLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDR 367
Query: 206 LRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYN-GFRLDXXXXXXXXXXFVCPEALVQGR 264
+ WN+M+AG + + ++L + M + G + V A +
Sbjct: 368 --KIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKE 425
Query: 265 LVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGICDRTRVSWTAMISGYAQKG 324
+H + G D D V NTL+ MYS+ G ID A +F + DR V+W MI+GY
Sbjct: 426 AIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSE 485
Query: 325 DLDEALRLFFAME--------AAGEL---PDLVTVLSMISGCGQSGALELGKWFDNYACS 373
++AL L M+ A + P+ +T+++++ C AL GK YA
Sbjct: 486 HHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIK 545
Query: 374 GGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKIVVSWTTMIAGCALNGEFVEALDL 433
L +V V +AL+DMY+KCG + +R++F +P+K V++W +I ++G EA+DL
Sbjct: 546 NNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDL 605
Query: 434 FHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADL 493
+M ++PN VTF++V AC+H+G +++G I + D G+ P DHY+C+ DL
Sbjct: 606 LRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVE--PSSDHYACVVDL 663
Query: 494 LGRKGKLKEALDFVQSMPIK-SDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAP 552
LGR G++KEA + MP + AG W +LL A +IH N+EIGE A L +LEP+ A+
Sbjct: 664 LGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASH 723
Query: 553 YVEMANKYALGGRWDGVANIRTMMKRNQVKKFPGQSLFHINGKTCTFTAEDRYHAESELT 612
YV +AN Y+ G WD +R MK V+K PG S + F A D H +SE
Sbjct: 724 YVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKL 783
Query: 613 YPVLDCLALHSREEAY 628
L+ L R+E Y
Sbjct: 784 SGYLETLWERMRKEGY 799
|
|
| TAIR|locus:2119440 AT4G13650 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 849 (303.9 bits), Expect = 8.0e-85, P = 8.0e-85
Identities = 204/622 (32%), Positives = 306/622 (49%)
Query: 22 WNSQIREAVNKNEAHKTLLLFRQMKQNDIEPNNLTFPFIAKACAKLSDLIYSQMIHGHIV 81
+N+ I K + LF++M + +EP++ T + AC+ L Q +H +
Sbjct: 357 YNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTT 416
Query: 82 KSPFV--------------KCDRLDCAYKIFDEMAVRDVASWNAMLVGFAQMGFLENVLR 127
K F KC ++ A F E V +V WN MLV + + L N R
Sbjct: 417 KLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFR 476
Query: 128 LFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISSYA 187
+F M++ I + T + + I L L + +HS I + VC+ I YA
Sbjct: 477 IFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYA 536
Query: 188 KCDDLKMAELVFCGIEERLRTVVSWNSMVAGCTYGDKFDD-SLNFYRHMMYNGFRLDXXX 246
K L A + I + VVSW +M+AG T + FDD +L +R M+ G R D
Sbjct: 537 KLGKLDTAWDIL--IRFAGKDVVSWTTMIAGYTQYN-FDDKALTTFRQMLDRGIRSDEVG 593
Query: 247 XXXXXXXFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGIC 306
+AL +G+ +H+ GF D+ N L+++YS+CG I+ + + F+
Sbjct: 594 LTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTE 653
Query: 307 DRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKW 366
++W A++SG+ Q G+ +EALR+F M G + T S + ++ ++ GK
Sbjct: 654 AGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQ 713
Query: 367 FDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKIVVSWTTMIAGCALNGE 426
G VCNALI MY+KCGSI DA + F + K VSW +I + +G
Sbjct: 714 VHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGF 773
Query: 427 FVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDH 486
EALD F Q++ ++RPN VT + VL AC+H G ++KG A + G+S PE H
Sbjct: 774 GSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPE--H 831
Query: 487 YSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLE 546
Y C+ D+L R G L A +F+Q MPIK DA +W TLL AC +H N+EIGE+ A+ L +LE
Sbjct: 832 YVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELE 891
Query: 547 PHSAAPYVEMANKYALGGRWDGVANIRTMMKRNQVKKFPGQSLFHINGKTCTFTAEDRYH 606
P +A YV ++N YA+ +WD R MK VKK PGQS + +F D+ H
Sbjct: 892 PEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNH 951
Query: 607 AESELTYPVLDCLALHSREEAY 628
++ + L + E Y
Sbjct: 952 PLADEIHEYFQDLTKRASEIGY 973
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| TAIR|locus:2181201 AT5G27110 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 835 (299.0 bits), Expect = 2.4e-83, P = 2.4e-83
Identities = 210/626 (33%), Positives = 314/626 (50%)
Query: 17 STINQWNSQIREAVNKNEA-HKTLLLFRQMKQNDI-EPNNLTFPFIAKACAKLSDLIYSQ 74
S + WNS + +KN H TL +F+++ I P++ TFP + KA L +
Sbjct: 69 SDVYIWNS-LMSGYSKNSMFHDTLEVFKRLLNCSICVPDSFTFPNVIKAYGALGREFLGR 127
Query: 75 MIHGHIVKSPFVKCDRL---------------DCAYKIFDEMAVRDVASWNAMLVGFAQM 119
MIH +VKS +V CD + + + ++FDEM RDVASWN ++ F Q
Sbjct: 128 MIHTLVVKSGYV-CDVVVASSLVGMYAKFNLFENSLQVFDEMPERDVASWNTVISCFYQS 186
Query: 120 GFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVC 179
G E L LF M G + + V++ A L K +H + G + D V
Sbjct: 187 GEAEKALELFGRMESSGFEPNSVSLTVAISACSRLLWLERGKEIHRKCVKKGFELDEYVN 246
Query: 180 NTWISSYAKCDDLKMAELVFCGIEERLRTVVSWNSMVAG-CTYGDKFDDSLNFYRHMMYN 238
+ + Y KCD L++A VF + + ++V+WNSM+ G GD + M+
Sbjct: 247 SALVDMYGKCDCLEVAREVFQKMPRK--SLVAWNSMIKGYVAKGDS-KSCVEILNRMIIE 303
Query: 239 GFRLDXXXXXXXXXXFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSA 298
G R L+ G+ +H + I + D+ V +LI +Y KCG+ + A
Sbjct: 304 GTRPSQTTLTSILMACSRSRNLLHGKFIHGYVIRSVVNADIYVNCSLIDLYFKCGEANLA 363
Query: 299 RVLFDGICDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQS 358
+F SW MIS Y G+ +A+ ++ M + G PD+VT S++ C Q
Sbjct: 364 ETVFSKTQKDVAESWNVMISSYISVGNWFKAVEVYDQMVSVGVKPDVVTFTSVLPACSQL 423
Query: 359 GALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKIVVSWTTMI 418
ALE GK L+ + ++ +AL+DMYSKCG+ +A +F ++P+K VVSWT MI
Sbjct: 424 AALEKGKQIHLSISESRLETDELLLSALLDMYSKCGNEKEAFRIFNSIPKKDVVSWTVMI 483
Query: 419 AGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGI 478
+ +G+ EAL F ++ + L+P+ VT LAVL AC H G +++G GI
Sbjct: 484 SAYGSHGQPREALYQFDEMQKFGLKPDGVTLLAVLSACGHAGLIDEGLKFFSQMRSKYGI 543
Query: 479 SYNPELDHYSCMADLLGRKGKLKEALDFVQSMPIKSD-AGIWGTLLCACKIHLNIEIGEY 537
P ++HYSCM D+LGR G+L EA + +Q P SD A + TL AC +HL +G+
Sbjct: 544 E--PIIEHYSCMIDILGRAGRLLEAYEIIQQTPETSDNAELLSTLFSACCLHLEHSLGDR 601
Query: 538 VAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRNQVKKFPGQSLFHINGKTC 597
+A L + P A+ Y+ + N YA G WD +R MK ++K PG S ++ K C
Sbjct: 602 IARLLVENYPDDASTYMVLFNLYASGESWDAARRVRLKMKEMGLRKKPGCSWIEMSDKVC 661
Query: 598 TFTAEDRYHAESELTYPVLDCLALHS 623
F AEDR H +E Y +CLAL S
Sbjct: 662 HFFAEDRSHLRAENVY---ECLALLS 684
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| TAIR|locus:2054131 SLO2 "AT2G13600" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 635 (228.6 bits), Expect = 3.1e-83, Sum P(2) = 3.1e-83
Identities = 132/349 (37%), Positives = 198/349 (56%)
Query: 284 TLISMYSKCGDIDSARVLFDGICDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELP 343
++IS Y+ +AR++F + +R VSW A+I+GY Q G+ +EAL LF ++ P
Sbjct: 325 SMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCP 384
Query: 344 DLVTVLSMISGCGQSGALELGKWFDNYACSGGLK------DNVMVCNALIDMYSKCGSIG 397
+ +++ C L LG + G K D++ V N+LIDMY KCG +
Sbjct: 385 THYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVE 444
Query: 398 DARELFYALPEKIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACT 457
+ +F + E+ VSW MI G A NG EAL+LF +++E +P+ +T + VL AC
Sbjct: 445 EGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACG 504
Query: 458 HTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMPIKSDAG 517
H GF+E+G D G++ P DHY+CM DLLGR G L+EA ++ MP++ D+
Sbjct: 505 HAGFVEEGRHYFSSMTRDFGVA--PLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSV 562
Query: 518 IWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMK 577
IWG+LL ACK+H NI +G+YVA L ++EP ++ PYV ++N YA G+W+ V N+R M+
Sbjct: 563 IWGSLLAACKVHRNITLGKYVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKSMR 622
Query: 578 RNQVKKFPGQSLFHINGKTCTFTAEDRYHAESELTYPVLDCLALHSREE 626
+ V K PG S I G F +D+ H + + +LD L R E
Sbjct: 623 KEGVTKQPGCSWIKIQGHDHVFMVKDKSHPRKKQIHSLLDILIAEMRPE 671
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| P0C8Q2 | PP323_ARATH | No assigned EC number | 0.5504 | 0.9594 | 0.9403 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00019413001 | SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (638 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 641 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-126 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 4e-86 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-77 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-70 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-41 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 5e-40 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 4e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 8e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 5e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 6e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.003 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 391 bits (1007), Expect = e-126
Identities = 198/593 (33%), Positives = 303/593 (51%), Gaps = 20/593 (3%)
Query: 39 LLLFRQMKQNDIEPNNLTFPFIAKACAKLSDLIYSQMIHGHIVKSPF------------- 85
L L+ +M + P+ TFP + + C + DL + +H H+V+ F
Sbjct: 172 LCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITM 231
Query: 86 -VKCDRLDCAYKIFDEMAVRDVASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTV 144
VKC + A +FD M RD SWNAM+ G+ + G L LF+ MR + + D +T+
Sbjct: 232 YVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTI 291
Query: 145 MGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISSYAKCDDLKMAELVFCGIEE 204
+ A L + +H + + G DVSVCN+ I Y AE VF +E
Sbjct: 292 TSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME- 350
Query: 205 RLRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVVSLLSSFVCPEALVQGR 264
+ VSW +M++G D +L Y M + D T+ S+LS+ C L G
Sbjct: 351 -TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGV 409
Query: 265 LVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGICDRTRVSWTAMISGYAQKG 324
+H G V V N LI MYSKC ID A +F I ++ +SWT++I+G
Sbjct: 410 KLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNN 469
Query: 325 DLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCN 384
EAL F M + P+ VT+++ +S C + GAL GK + G+ + + N
Sbjct: 470 RCFEALIFFRQMLLTLK-PNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPN 528
Query: 385 ALIDMYSKCGSIGDARELFYALPEKIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRP 444
AL+D+Y +CG + A F EK VVSW ++ G +G+ A++LF++++E + P
Sbjct: 529 ALLDLYVRCGRMNYAWNQF-NSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNP 587
Query: 445 NRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEAL 504
+ VTF+++L AC+ +G + +G + I+ P L HY+C+ DLLGR GKL EA
Sbjct: 588 DEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSIT--PNLKHYACVVDLLGRAGKLTEAY 645
Query: 505 DFVQSMPIKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGG 564
+F+ MPI D +WG LL AC+IH ++E+GE A +F+L+P+S Y+ + N YA G
Sbjct: 646 NFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAG 705
Query: 565 RWDGVANIRTMMKRNQVKKFPGQSLFHINGKTCTFTAEDRYHAESELTYPVLD 617
+WD VA +R M+ N + PG S + GK F +D H + + VL+
Sbjct: 706 KWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLE 758
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 283 bits (726), Expect = 4e-86
Identities = 155/488 (31%), Positives = 243/488 (49%), Gaps = 4/488 (0%)
Query: 143 TVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISSYAKCDDLKMAELVFCGI 202
T L +A I K + +K+V+ G + D + N + + KC L A +F +
Sbjct: 125 TYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEM 184
Query: 203 EERLRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVVSLLSSFVCPEALVQ 262
ER + SW +++ G + ++ +R M +G + T V +L + +
Sbjct: 185 PER--NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242
Query: 263 GRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGICDRTRVSWTAMISGYAQ 322
G+ +H + G D V LI MYSKCGDI+ AR +FDG+ ++T V+W +M++GYA
Sbjct: 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYAL 302
Query: 323 KGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMV 382
G +EAL L++ M +G D T MI + LE K G +++
Sbjct: 303 HGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVA 362
Query: 383 CNALIDMYSKCGSIGDARELFYALPEKIVVSWTTMIAGCALNGEFVEALDLFHQLMELDL 442
AL+D+YSK G + DAR +F +P K ++SW +IAG +G +A+++F +++ +
Sbjct: 363 NTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGV 422
Query: 443 RPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKE 502
PN VTFLAVL AC ++G E+GW I ++ I P HY+CM +LLGR+G L E
Sbjct: 423 APNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRI--KPRAMHYACMIELLGREGLLDE 480
Query: 503 ALDFVQSMPIKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYAL 562
A ++ P K +W LL AC+IH N+E+G A L+ + P YV + N Y
Sbjct: 481 AYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNS 540
Query: 563 GGRWDGVANIRTMMKRNQVKKFPGQSLFHINGKTCTFTAEDRYHAESELTYPVLDCLALH 622
GR A + +KR + P + + + +F + DR H +S Y LD L
Sbjct: 541 SGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKE 600
Query: 623 SREEAYSS 630
E Y +
Sbjct: 601 ISEYGYVA 608
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 264 bits (675), Expect = 1e-77
Identities = 155/467 (33%), Positives = 235/467 (50%), Gaps = 17/467 (3%)
Query: 16 SSTINQWNSQIREAVNKNEAHKTLLLFRQMKQNDIEPNNLTFPFIAKAC----------- 64
SS+ + NSQ+R + + + L L M++ + + + + + C
Sbjct: 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSR 107
Query: 65 ---AKLSDLIYSQMIHGHIVKSPFVKCDRLDCAYKIFDEMAVRDVASWNAMLVGFAQMGF 121
LS + G+ + S FV+ L A+ +F +M RD+ SWN ++ G+A+ G+
Sbjct: 108 VCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGY 167
Query: 122 LENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNT 181
+ L L++ M G++ D T + + L+ + VH+ + G + DV V N
Sbjct: 168 FDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNA 227
Query: 182 WISSYAKCDDLKMAELVFCGIEERLRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFR 241
I+ Y KC D+ A LVF + R +SWN+M++G + + L + M
Sbjct: 228 LITMYVKCGDVVSARLVFDRMPRRDC--ISWNAMISGYFENGECLEGLELFFTMRELSVD 285
Query: 242 LDVTTVVSLLSSFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVL 301
D+ T+ S++S+ GR +H + + GF +DVSV N+LI MY G A +
Sbjct: 286 PDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKV 345
Query: 302 FDGICDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGAL 361
F + + VSWTAMISGY + G D+AL + ME PD +T+ S++S C G L
Sbjct: 346 FSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDL 405
Query: 362 ELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKIVVSWTTMIAGC 421
++G A GL V+V NALI+MYSKC I A E+F+ +PEK V+SWT++IAG
Sbjct: 406 DVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGL 465
Query: 422 ALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAI 468
LN EAL F Q M L L+PN VT +A L AC G L G I
Sbjct: 466 RLNNRCFEALIFFRQ-MLLTLKPNSVTLIAALSACARIGALMCGKEI 511
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 244 bits (624), Expect = 2e-70
Identities = 150/454 (33%), Positives = 225/454 (49%), Gaps = 33/454 (7%)
Query: 110 NAMLVGFAQMGFLENVLRLFYNMRLVGIQAD---FVTVMGL-----TQAAIHAKHLSLLK 161
N+ L G LE L+L +M+ + + D +V + L L
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS 114
Query: 162 SVHSFGIHIGVDADVSVCNTWISSYAKCDDLKMAELVFCGIEERLRTVVSWNSMVAGCTY 221
S S G+ +G N +S + + +L A VF + ER + SWN +V G
Sbjct: 115 SHPSLGVRLG--------NAMLSMFVRFGELVHAWYVFGKMPER--DLFSWNVLVGGYAK 164
Query: 222 GDKFDDSLNFYRHMMYNGFRLDVTTVVSLLSSFVCPEALVQGRLVHSHGIHYGFDLDVSV 281
FD++L Y M++ G R DV T +L + L +GR VH+H + +GF+LDV V
Sbjct: 165 AGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDV 224
Query: 282 INTLISMYSKCGDIDSARVLFDGICDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGE 341
+N LI+MY KCGD+ SAR++FD + R +SW AMISGY + G+ E L LFF M
Sbjct: 225 VNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSV 284
Query: 342 LPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARE 401
PDL+T+ S+IS C G LG+ Y G +V VCN+LI MY GS G+A +
Sbjct: 285 DPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEK 344
Query: 402 LFYALPEKIVVSWTTMIAGCALNGEFVEALDLFHQLMELD-LRPNRVTFLAVLQACTHTG 460
+F + K VSWT MI+G NG +AL+ + LME D + P+ +T +VL AC G
Sbjct: 345 VFSRMETKDAVSWTAMISGYEKNGLPDKALETY-ALMEQDNVSPDEITIASVLSACACLG 403
Query: 461 FLEKGWAISIIQYDDKGISY----NPELDHYSCMADLLGRKGKLKEALDFVQSMPIKSDA 516
L+ G + + ISY N ++ YS + + +AL+ ++P K D
Sbjct: 404 DLDVGVKLHELAERKGLISYVVVANALIEMYS-------KCKCIDKALEVFHNIPEK-DV 455
Query: 517 GIWGTLLCACKI-HLNIEIGEYVAYCLFKLEPHS 549
W +++ ++ + E + L L+P+S
Sbjct: 456 ISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNS 489
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 160 bits (406), Expect = 2e-41
Identities = 120/439 (27%), Positives = 198/439 (45%), Gaps = 21/439 (4%)
Query: 7 PPRLNRIYRSSTINQWNSQIREAVNKNEAHKTLLLFRQMKQN-DIEPNNLTFPFIAKACA 65
RL+ + SQI + V + L LF ++ T+ + +AC
Sbjct: 75 DARLDDTQIRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACI 134
Query: 66 KLSDLIYSQMIHGHIVKSPF--------------VKCDRLDCAYKIFDEMAVRDVASWNA 111
L + + ++ H+ S F VKC L A ++FDEM R++ASW
Sbjct: 135 ALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGT 194
Query: 112 MLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIG 171
++ G G LF M G A+ T + + +A+ + +H + G
Sbjct: 195 IIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTG 254
Query: 172 VDADVSVCNTWISSYAKCDDLKMAELVFCGIEERLRTVVSWNSMVAGCTYGDKFDDSLNF 231
V D V I Y+KC D++ A VF G+ E +T V+WNSM+AG +++L
Sbjct: 255 VVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE--KTTVAWNSMLAGYALHGYSEEALCL 312
Query: 232 YRHMMYNGFRLDVTTVVSLLSSFVCPEALVQGRLVHSHGIHYGFDLDVSVINT-LISMYS 290
Y M +G +D T ++ F L + H+ I GF LD+ V NT L+ +YS
Sbjct: 313 YYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDI-VANTALVDLYS 371
Query: 291 KCGDIDSARVLFDGICDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLS 350
K G ++ AR +FD + + +SW A+I+GY G +A+ +F M A G P+ VT L+
Sbjct: 372 KWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLA 431
Query: 351 MISGCGQSGALELGK-WFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEK 409
++S C SG E G F + + + +K M +I++ + G + +A + P K
Sbjct: 432 VLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFK 491
Query: 410 IVVS-WTTMIAGCALNGEF 427
V+ W ++ C ++
Sbjct: 492 PTVNMWAALLTACRIHKNL 510
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 155 bits (394), Expect = 5e-40
Identities = 81/294 (27%), Positives = 146/294 (49%), Gaps = 8/294 (2%)
Query: 224 KFDDSLNFYRHMMYNG-FRLDVTTVVSLLSSFVCPEALVQGRLVHSHGIHYGFDLDVSVI 282
+ ++L + + F L +T +L+ + + +++ + V+ H GF+ D ++
Sbjct: 102 RHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMM 161
Query: 283 NTLISMYSKCGDIDSARVLFDGICDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEL 342
N ++ M+ KCG + AR LFD + +R SW +I G G+ EA LF M G
Sbjct: 162 NRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSD 221
Query: 343 PDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDAREL 402
+ T + M+ G+ G+ G+ + V ALIDMYSKCG I DAR +
Sbjct: 222 AEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCV 281
Query: 403 FYALPEKIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFL 462
F +PEK V+W +M+AG AL+G EAL L++++ + + ++ TF +++ + L
Sbjct: 282 FDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALL 341
Query: 463 E--KGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMPIKS 514
E K +I+ + ++ + + DL + G++++A + MP K+
Sbjct: 342 EHAKQAHAGLIRT-----GFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKN 390
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 73.4 bits (180), Expect = 2e-13
Identities = 71/270 (26%), Positives = 119/270 (44%), Gaps = 36/270 (13%)
Query: 280 SVINTLISMYSKCGDIDSA-RVL-------FDGICDRTRVSWTAMISGYAQKGDLDEALR 331
S N L+S+ + DID A RVL C +T +IS A+ G +D
Sbjct: 438 STFNMLMSVCASSQDIDGALRVLRLVQEAGLKADC----KLYTTLISTCAKSGKVDAMFE 493
Query: 332 LFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYAC--SGGLKDNVMVCNALIDM 389
+F M AG ++ T ++I GC ++G ++ K F Y S +K + +V NALI
Sbjct: 494 VFHEMVNAGVEANVHTFGALIDGCARAG--QVAKAFGAYGIMRSKNVKPDRVVFNALI-- 549
Query: 390 YSKCGSIGDARELFYALPEKIV---------VSWTTMIAGCALNGEFVEALDLFHQLMEL 440
S CG G F L E ++ ++ CA G+ A +++ + E
Sbjct: 550 -SACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY 608
Query: 441 DLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDD-KGISYNPELDHYSCMADLLGRKGK 499
+++ + + +C+ G + +A+SI YDD K P+ +S + D+ G G
Sbjct: 609 NIKGTPEVYTIAVNSCSQKGDWD--FALSI--YDDMKKKGVKPDEVFFSALVDVAGHAGD 664
Query: 500 LKEALDFVQSMP---IKSDAGIWGTLLCAC 526
L +A + +Q IK + +L+ AC
Sbjct: 665 LDKAFEILQDARKQGIKLGTVSYSSLMGAC 694
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 51.3 bits (124), Expect = 8e-09
Identities = 17/45 (37%), Positives = 28/45 (62%)
Query: 311 VSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGC 355
V++ +I GY +KG ++EAL+LF M+ G P++ T +I G
Sbjct: 4 VTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 45.5 bits (109), Expect = 1e-06
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 411 VVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQAC 456
VV++ T+I G G+ EAL LF+++ + ++PN T+ ++
Sbjct: 3 VVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 4e-06
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 311 VSWTAMISGYAQKGDLDEALRLFFAMEAAG 340
V++ ++ISGY + G L+EAL LF M+ G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKG 30
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 3e-05
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 311 VSWTAMISGYAQKGDLDEALRLFFAMEAAGELPD 344
V++ +I G + G ++EAL LF M+ G PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 8e-05
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 412 VSWTTMIAGCALNGEFVEALDLFHQLMELDLRPN 445
V++ T+I G G EAL+LF ++ E + P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 37.7 bits (89), Expect = 5e-04
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 306 CDRTRVSWTAMISGYAQKGDLDEALRLFFAME 337
V++ +I G + G +DEA+ L ME
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 6e-04
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 412 VSWTTMIAGCALNGEFVEALDLFHQLMELDL 442
V++ ++I+G G+ EAL+LF ++ E +
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 35.8 bits (84), Expect = 0.003
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 278 DVSVINTLISMYSKCGDIDSARVLFDGICDR----TRVSWTAMISGYAQ 322
DV NTLI Y K G ++ A LF+ + R +++ +I G +
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 641 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.96 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.95 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.94 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.93 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.92 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.89 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.89 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.86 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.86 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.86 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.86 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.85 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.85 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.84 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.83 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.82 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.82 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.82 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.8 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.75 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.74 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.73 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.72 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.65 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.63 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.63 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.61 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.6 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.59 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.56 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.54 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.53 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.53 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.52 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.51 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.49 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.49 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.49 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.48 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.48 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.48 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.46 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.43 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.42 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.39 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.38 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.37 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.35 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.35 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.34 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.34 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.33 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.33 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.33 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.31 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.3 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.3 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.27 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.25 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.24 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.23 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.23 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.21 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.2 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.18 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.18 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.14 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.14 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.14 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.13 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.11 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.11 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.1 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.09 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.08 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.06 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.05 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.04 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.03 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.95 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.94 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.92 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.91 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.9 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.88 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.88 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.88 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.83 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.76 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.76 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.76 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.76 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.75 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.75 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.72 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.72 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.71 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.68 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.66 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.66 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.63 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.62 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.62 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.62 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.59 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.57 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.56 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.55 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.55 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.51 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.51 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.49 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.48 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.48 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.48 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.47 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.46 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.44 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.44 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.42 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.4 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.33 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.33 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.3 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.28 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.27 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.26 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.24 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.24 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.21 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.18 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.13 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.13 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.12 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.11 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.11 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.1 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.1 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.08 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.04 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.03 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.98 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.94 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.94 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.92 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.91 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.91 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.91 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.88 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.87 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.85 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.84 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.83 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.82 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.81 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.8 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.79 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.76 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.76 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.74 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.72 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.68 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.64 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.63 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.61 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.6 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.57 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.54 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.54 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.51 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.48 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.48 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.48 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.46 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.42 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.42 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.39 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.37 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.34 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.33 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.31 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.3 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.27 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.25 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.24 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.21 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.2 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.19 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.17 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.16 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.15 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.14 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.09 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.06 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.02 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.99 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.96 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.95 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.93 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.82 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.74 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.72 | |
| PF14432 | 116 | DYW_deaminase: DYW family of nucleic acid deaminas | 96.71 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.64 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.62 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.62 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.55 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.54 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.51 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.51 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.49 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.49 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.44 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.37 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.37 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.29 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.26 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.24 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.23 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.14 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.1 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.07 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.02 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.85 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.82 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.81 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.77 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.68 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.63 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.46 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.46 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.42 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 95.36 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 95.33 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.3 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 95.3 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.26 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.26 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.17 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 95.13 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.12 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.09 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.0 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.76 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.74 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 94.46 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 94.34 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.31 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.3 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.27 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 94.18 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.03 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 93.99 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 93.93 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.9 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.88 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.87 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 93.76 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 93.74 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 93.62 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 93.53 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 93.39 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.38 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 93.38 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.27 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 92.9 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 92.46 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 92.32 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 92.03 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 91.97 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 91.83 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 91.79 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 91.73 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 91.68 | |
| PRK09687 | 280 | putative lyase; Provisional | 91.58 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 91.38 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 91.3 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 91.13 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.07 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 91.05 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 90.9 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 90.8 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 90.79 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 90.73 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 90.46 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 90.37 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 90.29 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 90.18 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 90.02 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 90.02 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 89.81 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 89.8 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 89.69 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 89.55 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 89.52 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 89.35 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 89.2 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 88.98 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 88.96 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 88.9 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 88.77 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 88.72 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 88.7 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 88.66 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 88.65 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 88.63 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 88.43 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 88.21 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 88.14 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 87.84 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 87.82 | |
| KOG0686 | 466 | consensus COP9 signalosome, subunit CSN1 [Posttran | 87.36 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 87.26 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 86.95 | |
| PRK09687 | 280 | putative lyase; Provisional | 86.81 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 86.78 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 86.64 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 86.53 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 86.48 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 86.4 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 86.37 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 86.21 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 85.74 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 85.5 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 85.47 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 85.3 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 85.21 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 85.08 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 84.45 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 84.27 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 83.82 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 83.69 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 83.29 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 82.01 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 81.95 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 81.88 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 81.57 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 81.27 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 80.83 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 80.68 | |
| KOG0403 | 645 | consensus Neoplastic transformation suppressor Pdc | 80.53 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-107 Score=905.15 Aligned_cols=627 Identities=32% Similarity=0.546 Sum_probs=618.2
Q ss_pred cCchhHHhcccCCCChhhhHHHHHHHHHhCCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHhHHHHHHhh
Q 048321 3 VSSLPPRLNRIYRSSTINQWNSQIREAVNKNEAHKTLLLFRQMKQNDIEPNNLTFPFIAKACAKLSDLIYSQMIHGHIVK 82 (641)
Q Consensus 3 ~~~a~~~f~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~i~~~~~~ 82 (641)
++.|+++|++|+.|+++ +||++|.+|++.|++++|+++|++|++.|+.||..||++++++|++.+++..++++|.++++
T Consensus 137 ~~~A~~~f~~m~~~d~~-~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~ 215 (857)
T PLN03077 137 LVHAWYVFGKMPERDLF-SWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVR 215 (857)
T ss_pred hHHHHHHHhcCCCCCee-EHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHH
Confidence 46799999999999999 99999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccC--------------cCCCChhHHHHHhhccCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHH
Q 048321 83 SPF--------------VKCDRLDCAYKIFDEMAVRDVASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLT 148 (641)
Q Consensus 83 ~~~--------------~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll 148 (641)
.|+ +++|++++|.++|++|+.||+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++
T Consensus 216 ~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll 295 (857)
T PLN03077 216 FGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVI 295 (857)
T ss_pred cCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHH
Confidence 876 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCChhHHHHHHHHHHHHcCCCChhHHHHHHHHhHcCCChhHHHHHHhcccCCCCCchhHHHHHHHHhcCCCchHH
Q 048321 149 QAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISSYAKCDDLKMAELVFCGIEERLRTVVSWNSMVAGCTYGDKFDDS 228 (641)
Q Consensus 149 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 228 (641)
.+|+..|+++.+.+++..+.+.|+.||..+||+|+++|+++|++++|.++|++|.. ||..+||.+|.+|++.|++++|
T Consensus 296 ~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--~d~~s~n~li~~~~~~g~~~~A 373 (857)
T PLN03077 296 SACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET--KDAVSWTAMISGYEKNGLPDKA 373 (857)
T ss_pred HHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCeeeHHHHHHHHHhCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999998 9999999999999999999999
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC
Q 048321 229 LNFYRHMMYNGFRLDVTTVVSLLSSFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGICDR 308 (641)
Q Consensus 229 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 308 (641)
+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.|+..++|+|+++|+++|++++|.++|++|.++
T Consensus 374 ~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~ 453 (857)
T PLN03077 374 LETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK 453 (857)
T ss_pred HHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 048321 309 TRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALID 388 (641)
Q Consensus 309 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 388 (641)
|+++||++|.+|+++|+.++|+.+|++|.. +++||..||+.++.+|++.|+++.+.++|..+.+.|+.++..++|+|++
T Consensus 454 d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~ 532 (857)
T PLN03077 454 DVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLD 532 (857)
T ss_pred CeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHH
Confidence 999999999999999999999999999986 6999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHH
Q 048321 389 MYSKCGSIGDARELFYALPEKIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAI 468 (641)
Q Consensus 389 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~ 468 (641)
+|+++|++++|.++|+.+ .+|+.+||+||.+|+++|+.++|+++|++|.+.|+.||.+||+.++.+|++.|++++|.++
T Consensus 533 ~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~ 611 (857)
T PLN03077 533 LYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEY 611 (857)
T ss_pred HHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHH
Confidence 999999999999999999 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCC
Q 048321 469 SIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPH 548 (641)
Q Consensus 469 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 548 (641)
|+.|.+.+| +.|+..+|++|+++|++.|++++|.+++++|+.+||..+|++|+.+|+.+|+.+.|+.+.+++++++|+
T Consensus 612 f~~M~~~~g--i~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~ 689 (857)
T PLN03077 612 FHSMEEKYS--ITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPN 689 (857)
T ss_pred HHHHHHHhC--CCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Confidence 999998899 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCceeEEEECCEEEEEeeCCCCCCChhcHHHHHHHHHHHHHHccc
Q 048321 549 SAAPYVEMANKYALGGRWDGVANIRTMMKRNQVKKFPGQSLFHINGKTCTFTAEDRYHAESELTYPVLDCLALHSREEAY 628 (641)
Q Consensus 549 ~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~g~ 628 (641)
++..|+.++++|+..|+|++|.++++.|+++|++|+||+|||++++++|.|++||.+||+.++||.+|+.|..+|++.||
T Consensus 690 ~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~ 769 (857)
T PLN03077 690 SVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGL 769 (857)
T ss_pred CcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcc
Q 048321 629 SSHLKWIP 636 (641)
Q Consensus 629 ~~~~~~~~ 636 (641)
+||+++++
T Consensus 770 ~~~~~~~~ 777 (857)
T PLN03077 770 AGSESSSM 777 (857)
T ss_pred CCCcchhc
Confidence 99999876
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-90 Score=748.57 Aligned_cols=532 Identities=30% Similarity=0.486 Sum_probs=523.2
Q ss_pred CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCChhhHHHHHHHHhccCChhHHHHHHHHHHHHcCCCChhHHHH
Q 048321 103 VRDVASWNAMLVGFAQMGFLENVLRLFYNMRLVG-IQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNT 181 (641)
Q Consensus 103 ~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 181 (641)
.++..+|+.+|.++.+.|++++|+++|+.|...+ +.||..||+.++.+|.+.++++.+.+++..|.+.|+.||..+||.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4477899999999999999999999999999865 789999999999999999999999999999999999999999999
Q ss_pred HHHHhHcCCChhHHHHHHhcccCCCCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCchH
Q 048321 182 WISSYAKCDDLKMAELVFCGIEERLRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVVSLLSSFVCPEALV 261 (641)
Q Consensus 182 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 261 (641)
|+++|+++|+++.|.++|++|++ ||.++||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~--~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~ 241 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPE--RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSAR 241 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCC--CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHH
Confidence 99999999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCC
Q 048321 262 QGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGICDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGE 341 (641)
Q Consensus 262 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 341 (641)
.+.+++..+.+.|+.+|..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|++.|++++|+++|++|.+.|+
T Consensus 242 ~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~ 321 (697)
T PLN03081 242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGV 321 (697)
T ss_pred HHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHH
Q 048321 342 LPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKIVVSWTTMIAGC 421 (641)
Q Consensus 342 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 421 (641)
.||..||+.++.+|++.|+++.|.++|..|.+.|+.||..++++|+++|+++|++++|.++|++|.++|+.+||+||.+|
T Consensus 322 ~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y 401 (697)
T PLN03081 322 SIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGY 401 (697)
T ss_pred CCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChH
Q 048321 422 ALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLK 501 (641)
Q Consensus 422 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 501 (641)
+++|+.++|+++|++|.+.|+.||.+||+.++.+|++.|.+++|.++|+.|.+.+| +.|+..+|++|+++|++.|+++
T Consensus 402 ~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g--~~p~~~~y~~li~~l~r~G~~~ 479 (697)
T PLN03081 402 GNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHR--IKPRAMHYACMIELLGREGLLD 479 (697)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcC--CCCCccchHhHHHHHHhcCCHH
Confidence 99999999999999999999999999999999999999999999999999998889 9999999999999999999999
Q ss_pred HHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 048321 502 EALDFVQSMPIKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRNQV 581 (641)
Q Consensus 502 ~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~~~ 581 (641)
+|.+++++|+.+|+..+|++|+.+|+.+|+++.|+.+++++++++|++...|..++++|++.|+|++|.+++++|+++|+
T Consensus 480 eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~ 559 (697)
T PLN03081 480 EAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGL 559 (697)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCceeEEEECCEEEEEeeCCCCCCChhcHHHHHHHHHHHHHHccccCCCCCcccc
Q 048321 582 KKFPGQSLFHINGKTCTFTAEDRYHAESELTYPVLDCLALHSREEAYSSHLKWIPEH 638 (641)
Q Consensus 582 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~g~~~~~~~~~~~ 638 (641)
+|.||+||+++++++|.|.+||.+||+..+||.+|+++..+|++.||+||+++++.+
T Consensus 560 ~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~ 616 (697)
T PLN03081 560 SMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPD 616 (697)
T ss_pred ccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhcc
Confidence 999999999999999999999999999999999999999999999999999998643
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-82 Score=700.80 Aligned_cols=607 Identities=29% Similarity=0.424 Sum_probs=545.1
Q ss_pred CChhhhHHHHHHHHHhCCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHhHHHHHHhhccC----------
Q 048321 16 SSTINQWNSQIREAVNKNEAHKTLLLFRQMKQNDIEPNNLTFPFIAKACAKLSDLIYSQMIHGHIVKSPF---------- 85 (641)
Q Consensus 16 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~i~~~~~~~~~---------- 85 (641)
++.. ++|.++.+|++.|++++|+.+|+.|.+.|+.|+..+|..++.+|.+.+.+..+..+|..+++.+.
T Consensus 49 ~~~~-~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~l 127 (857)
T PLN03077 49 SSTH-DSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM 127 (857)
T ss_pred cchh-hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence 3455 79999999999999999999999999999999999999999999999999999999999887764
Q ss_pred ----cCCCChhHHHHHhhccCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHH
Q 048321 86 ----VKCDRLDCAYKIFDEMAVRDVASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLK 161 (641)
Q Consensus 86 ----~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 161 (641)
+++|+++.|.++|++|++||+++||++|.+|++.|++++|+++|++|...|+.||..||+.++++|+..+++..+.
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~ 207 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGR 207 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHH
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCChhHHHHHHHHhHcCCChhHHHHHHhcccCCCCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCCC
Q 048321 162 SVHSFGIHIGVDADVSVCNTWISSYAKCDDLKMAELVFCGIEERLRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFR 241 (641)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 241 (641)
+++..+.+.|+.||..++|+|+++|+++|++++|.++|++|+. +|.++||++|.+|++.|++++|+++|++|.+.|+.
T Consensus 208 ~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~--~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~ 285 (857)
T PLN03077 208 EVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR--RDCISWNAMISGYFENGECLEGLELFFTMRELSVD 285 (857)
T ss_pred HHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC--CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 048321 242 LDVTTVVSLLSSFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGICDRTRVSWTAMISGYA 321 (641)
Q Consensus 242 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 321 (641)
||..||+.++.+|++.|+++.|.+++..+.+.|+.||..+||+|+.+|+++|++++|.++|++|..+|.++||+||.+|+
T Consensus 286 Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~ 365 (857)
T PLN03077 286 PDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYE 365 (857)
T ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 048321 322 QKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARE 401 (641)
Q Consensus 322 ~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 401 (641)
+.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++|+.+.+.|+.|+..++++|+++|+++|++++|.+
T Consensus 366 ~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~ 445 (857)
T PLN03077 366 KNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALE 445 (857)
T ss_pred hCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCC-
Q 048321 402 LFYALPEKIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISY- 480 (641)
Q Consensus 402 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~- 480 (641)
+|++|.++|+++||+||.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|.++.+.+++..+. +.| +
T Consensus 446 vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~-~~g--~~ 521 (857)
T PLN03077 446 VFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVL-RTG--IG 521 (857)
T ss_pred HHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHH-HhC--CC
Confidence 99999999999999999999999999999999999986 589999999999999999998888888888777 344 4
Q ss_pred -----------------------------CCChhHHHHHHHHhhccCChHHHHHHHHhCC---CCCChhHHHHHHHHHHH
Q 048321 481 -----------------------------NPELDHYSCMADLLGRKGKLKEALDFVQSMP---IKSDAGIWGTLLCACKI 528 (641)
Q Consensus 481 -----------------------------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p~~~~~~~ll~~~~~ 528 (641)
.||..+|++||.+|++.|+.++|+++|++|. ..||..+|++++.+|.+
T Consensus 522 ~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~ 601 (857)
T PLN03077 522 FDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSR 601 (857)
T ss_pred ccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhh
Confidence 4566777777777777778888888888776 67888888888888888
Q ss_pred cCCHHHHHHHHHHhHc---cCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCceeEEEECCEE--EEEe-eC
Q 048321 529 HLNIEIGEYVAYCLFK---LEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRNQVKKFPGQSLFHINGKT--CTFT-AE 602 (641)
Q Consensus 529 ~g~~~~a~~~~~~~~~---~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~~~~~~~~~s~~~~~~~~--~~~~-~~ 602 (641)
.|++++|.++|+.+.+ +.|+ ..+|.+++++|++.|+++||.+++++|. +++++ ..|-.+-+.+ |.-. .+
T Consensus 602 ~g~v~ea~~~f~~M~~~~gi~P~-~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~-~~~~aLl~ac~~~~~~e~~ 676 (857)
T PLN03077 602 SGMVTQGLEYFHSMEEKYSITPN-LKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDP-AVWGALLNACRIHRHVELG 676 (857)
T ss_pred cChHHHHHHHHHHHHHHhCCCCc-hHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCH-HHHHHHHHHHHHcCChHHH
Confidence 8888888888887763 4554 6788888888888888888888888874 23222 2233322221 1100 00
Q ss_pred C-------CCCCChhcHHHHH-------------HHHHHHHHHccccCCCCC
Q 048321 603 D-------RYHAESELTYPVL-------------DCLALHSREEAYSSHLKW 634 (641)
Q Consensus 603 ~-------~~~~~~~~~~~~l-------------~~l~~~~~~~g~~~~~~~ 634 (641)
. ...|.....|..| .++.+.|++.|.++++-+
T Consensus 677 e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~ 728 (857)
T PLN03077 677 ELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGC 728 (857)
T ss_pred HHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCc
Confidence 0 1346555555444 456789999998887643
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-68 Score=576.79 Aligned_cols=456 Identities=26% Similarity=0.413 Sum_probs=441.3
Q ss_pred CChhhhHHHHHHHHHhCCChhHHHHHHHHhHhCC-CCCCcccHHHHHHHHhccCCchHHhHHHHHHhhccC---------
Q 048321 16 SSTINQWNSQIREAVNKNEAHKTLLLFRQMKQND-IEPNNLTFPFIAKACAKLSDLIYSQMIHGHIVKSPF--------- 85 (641)
Q Consensus 16 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~~~~i~~~~~~~~~--------- 85 (641)
++.+ +|+.+|.+|.+.|++++|+++|++|...+ +.||..||+.++.+|++.+++..+.++|..+.+.|+
T Consensus 85 ~~~~-~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 85 KSGV-SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCce-eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3556 89999999999999999999999998764 789999999999999999999999999999998887
Q ss_pred -----cCCCChhHHHHHhhccCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHH
Q 048321 86 -----VKCDRLDCAYKIFDEMAVRDVASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLL 160 (641)
Q Consensus 86 -----~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 160 (641)
+++|++++|.++|++|+.||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|..+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCChhHHHHHHHHhHcCCChhHHHHHHhcccCCCCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCC
Q 048321 161 KSVHSFGIHIGVDADVSVCNTWISSYAKCDDLKMAELVFCGIEERLRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGF 240 (641)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 240 (641)
.+++..+.+.|+.||..++|+|+++|+++|++++|.++|++|.. +|+++||+||.+|++.|++++|+++|++|.+.|+
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~ 321 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE--KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGV 321 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC--CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999998 9999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHH
Q 048321 241 RLDVTTVVSLLSSFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGICDRTRVSWTAMISGY 320 (641)
Q Consensus 241 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 320 (641)
.||..||+.++.+|++.|++++|.+++..|.+.|+.||..++++|+++|+++|++++|.++|++|.++|+.+||+||.+|
T Consensus 322 ~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y 401 (697)
T PLN03081 322 SIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGY 401 (697)
T ss_pred CCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHH-cCCCCchhHHHHHHHHHHhcCCHHHH
Q 048321 321 AQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACS-GGLKDNVMVCNALIDMYSKCGSIGDA 399 (641)
Q Consensus 321 ~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A 399 (641)
++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|
T Consensus 402 ~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA 481 (697)
T PLN03081 402 GNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA 481 (697)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHH
Confidence 99999999999999999999999999999999999999999999999999986 69999999999999999999999999
Q ss_pred HHHHhhCCC-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHhccCChHHHHHHHHHHHhhhC
Q 048321 400 RELFYALPE-KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPN-RVTFLAVLQACTHTGFLEKGWAISIIQYDDKG 477 (641)
Q Consensus 400 ~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 477 (641)
.++|++|.. |+..+|++|+.+|..+|+.+.|..+++++.+ +.|+ ..+|..++..|++.|++++|.++++.|. ..|
T Consensus 482 ~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~-~~g 558 (697)
T PLN03081 482 YAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLK-RKG 558 (697)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHH-HcC
Confidence 999999975 8999999999999999999999999999975 4665 5699999999999999999999999998 455
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-67 Score=573.30 Aligned_cols=534 Identities=16% Similarity=0.194 Sum_probs=467.8
Q ss_pred cCCCChhHHHHHhhccCCCCcc-----cHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHH
Q 048321 86 VKCDRLDCAYKIFDEMAVRDVA-----SWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLL 160 (641)
Q Consensus 86 ~~~~~~~~A~~~f~~~~~~~~~-----~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 160 (641)
.++|++++|.++|++|+.++.. .++.++.+|.+.|..++|+.+|+.|.. ||..||+.++.+|++.|+++.|
T Consensus 381 ~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A 456 (1060)
T PLN03218 381 LRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGA 456 (1060)
T ss_pred HHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHH
Confidence 4567888999999999866554 556677789999999999999999974 9999999999999999999999
Q ss_pred HHHHHHHHHHcCCCChhHHHHHHHHhHcCCChhHHHHHHhcccCC--CCCchhHHHHHHHHhcCCCchHHHHHHHHHHHC
Q 048321 161 KSVHSFGIHIGVDADVSVCNTWISSYAKCDDLKMAELVFCGIEER--LRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYN 238 (641)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 238 (641)
.++|+.|.+.|+.||..+|+.||.+|+++|++++|.++|++|... .||..+|+.||.+|++.|++++|+++|++|...
T Consensus 457 ~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~ 536 (1060)
T PLN03218 457 LRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSK 536 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999865 689999999999999999999999999999999
Q ss_pred CCCCChhhHHHHHHHhcCCCchHHHHHHHHHHHH--hCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC----CCCcch
Q 048321 239 GFRLDVTTVVSLLSSFVCPEALVQGRLVHSHGIH--YGFDLDVSVINTLISMYSKCGDIDSARVLFDGIC----DRTRVS 312 (641)
Q Consensus 239 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~ 312 (641)
|+.||..||+.+|.+|++.|++++|.++|++|.+ .|+.||..+|++|+.+|+++|++++|.++|+.|. .++..+
T Consensus 537 Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~t 616 (1060)
T PLN03218 537 NVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEV 616 (1060)
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHH
Confidence 9999999999999999999999999999999987 6789999999999999999999999999999994 457789
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 048321 313 WTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSK 392 (641)
Q Consensus 313 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 392 (641)
||.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+.|+.|+..+|++||.+|++
T Consensus 617 ynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k 696 (1060)
T PLN03218 617 YTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSN 696 (1060)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHhhCC----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHH
Q 048321 393 CGSIGDARELFYALP----EKIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAI 468 (641)
Q Consensus 393 ~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~ 468 (641)
+|++++|.++|++|. .||+.+||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++
T Consensus 697 ~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l 776 (1060)
T PLN03218 697 AKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDL 776 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999995 4899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCCCCChhHHHHHHHHhh----cc-------------------CChHHHHHHHHhCC---CCCChhHHHHH
Q 048321 469 SIIQYDDKGISYNPELDHYSCMADLLG----RK-------------------GKLKEALDFVQSMP---IKSDAGIWGTL 522 (641)
Q Consensus 469 ~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~-------------------g~~~~A~~~~~~~~---~~p~~~~~~~l 522 (641)
|..|. +.| +.||..+|+++++++. ++ +..++|+.+|++|. ..||..+|+.+
T Consensus 777 ~~~M~-k~G--i~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~v 853 (1060)
T PLN03218 777 LSQAK-EDG--IKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQV 853 (1060)
T ss_pred HHHHH-HcC--CCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHH
Confidence 99998 678 9999999999997643 22 23468999999997 88999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHhHc-cCCCCCccHHHHHHHHHhcCCc-hHHHHHHHHHHhCCCccCCce-eEEEECCEEEEE
Q 048321 523 LCACKIHLNIEIGEYVAYCLFK-LEPHSAAPYVEMANKYALGGRW-DGVANIRTMMKRNQVKKFPGQ-SLFHINGKTCTF 599 (641)
Q Consensus 523 l~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~-~eA~~~~~~m~~~~~~~~~~~-s~~~~~~~~~~~ 599 (641)
+.++.+.+..+.+..+++.+.. -.+.+...|..+++.+ |++ ++|..++++|...|+.+.... .+ ..--.+|.|
T Consensus 854 L~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~---~~~~~~A~~l~~em~~~Gi~p~~~~~~~-~~~~d~~~~ 929 (1060)
T PLN03218 854 LGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF---GEYDPRAFSLLEEAASLGVVPSVSFKKS-PIVIDAEEL 929 (1060)
T ss_pred HHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh---ccChHHHHHHHHHHHHcCCCCCcccccC-ceEEEcccC
Confidence 9777788888888888876532 2344577888999877 443 689999999999999866542 11 111122333
Q ss_pred eeCCCCCCChhcHHHHHHHHHHHHHHccccCCCCC
Q 048321 600 TAEDRYHAESELTYPVLDCLALHSREEAYSSHLKW 634 (641)
Q Consensus 600 ~~~~~~~~~~~~~~~~l~~l~~~~~~~g~~~~~~~ 634 (641)
..| .....+...|..|...+...-..|..-.
T Consensus 930 ~~~----aa~~~l~~wl~~~~~~~~~g~~lp~~~~ 960 (1060)
T PLN03218 930 PVF----AAEVYLLTILKGLKHRLAAGAKLPNVTI 960 (1060)
T ss_pred cch----hHHHHHHHHHHHHHHHHhccCcCCccee
Confidence 322 1122344556666665533225555433
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-67 Score=573.06 Aligned_cols=504 Identities=15% Similarity=0.186 Sum_probs=472.8
Q ss_pred CChhhhHHHHHHHHHhCCChhHHHHHHHHhHhCCC-CCCcccHHHHHHHHhccCCchHHhHHHHHHhhccCcCCCChhHH
Q 048321 16 SSTINQWNSQIREAVNKNEAHKTLLLFRQMKQNDI-EPNNLTFPFIAKACAKLSDLIYSQMIHGHIVKSPFVKCDRLDCA 94 (641)
Q Consensus 16 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~A 94 (641)
++.. .|..++..|++.|++.+|+++|++|.+.|+ .|+..+++.++.+|. +.|.+++|
T Consensus 368 ~~~~-~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~---------------------~~g~~~eA 425 (1060)
T PLN03218 368 RKSP-EYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACK---------------------KQRAVKEA 425 (1060)
T ss_pred CCch-HHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHH---------------------HCCCHHHH
Confidence 4455 899999999999999999999999999995 567778888999984 45778999
Q ss_pred HHHhhccCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHHcCCC
Q 048321 95 YKIFDEMAVRDVASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDA 174 (641)
Q Consensus 95 ~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 174 (641)
.++|+.|+.||..+||.+|.+|++.|+++.|+++|++|.+.|+.||..+|+.+|.+|++.|+++.|.++++.|.+.|+.|
T Consensus 426 l~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~P 505 (1060)
T PLN03218 426 FRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEA 505 (1060)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHhHcCCChhHHHHHHhcccCC--CCCchhHHHHHHHHhcCCCchHHHHHHHHHHH--CCCCCChhhHHHH
Q 048321 175 DVSVCNTWISSYAKCDDLKMAELVFCGIEER--LRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMY--NGFRLDVTTVVSL 250 (641)
Q Consensus 175 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~t~~~l 250 (641)
|..+|+.||++|++.|++++|.++|+.|... .||..+|+.||.+|++.|++++|.++|++|.. .|+.||..||+.+
T Consensus 506 dvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaL 585 (1060)
T PLN03218 506 NVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGAL 585 (1060)
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHH
Confidence 9999999999999999999999999999765 79999999999999999999999999999986 6899999999999
Q ss_pred HHHhcCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC----CCCCcchHHHHHHHHHhCCCh
Q 048321 251 LSSFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGI----CDRTRVSWTAMISGYAQKGDL 326 (641)
Q Consensus 251 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~li~~~~~~g~~ 326 (641)
+.+|++.|++++|.++|+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++| ..||..+|+++|.+|++.|++
T Consensus 586 I~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~ 665 (1060)
T PLN03218 586 MKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDL 665 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCH
Confidence 9999999999999999999999999999999999999999999999999999999 367999999999999999999
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhC
Q 048321 327 DEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYAL 406 (641)
Q Consensus 327 ~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 406 (641)
++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|+.|.+.|+.||..+|++||.+|++.|++++|.++|++|
T Consensus 666 eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM 745 (1060)
T PLN03218 666 DKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEM 745 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhc----c-------------------
Q 048321 407 PE----KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTH----T------------------- 459 (641)
Q Consensus 407 ~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~------------------- 459 (641)
.. ||..+|++++.+|++.|+.++|.++|++|.+.|+.||..+|++++..|.+ .
T Consensus 746 ~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n 825 (1060)
T PLN03218 746 KRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIEN 825 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccccc
Confidence 64 89999999999999999999999999999999999999999999876542 1
Q ss_pred CChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC---CCCChhHHHHHHHHHHHcCCHHHHH
Q 048321 460 GFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP---IKSDAGIWGTLLCACKIHLNIEIGE 536 (641)
Q Consensus 460 g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p~~~~~~~ll~~~~~~g~~~~a~ 536 (641)
+..+.|..+|++|. ..| +.||..+|+.++.++.+.+..+.+..+++.|. ..|+..+|++|+.+|.+. .++|.
T Consensus 826 ~w~~~Al~lf~eM~-~~G--i~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~ 900 (1060)
T PLN03218 826 KWTSWALMVYRETI-SAG--TLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAF 900 (1060)
T ss_pred chHHHHHHHHHHHH-HCC--CCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHH
Confidence 12467999999999 678 99999999999999999999999999999986 566788999999998432 46899
Q ss_pred HHHHHhHccC
Q 048321 537 YVAYCLFKLE 546 (641)
Q Consensus 537 ~~~~~~~~~~ 546 (641)
.+++++.+..
T Consensus 901 ~l~~em~~~G 910 (1060)
T PLN03218 901 SLLEEAASLG 910 (1060)
T ss_pred HHHHHHHHcC
Confidence 9999997653
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=325.11 Aligned_cols=544 Identities=9% Similarity=-0.015 Sum_probs=366.7
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHhHHHHHHhhccC-------------cC
Q 048321 21 QWNSQIREAVNKNEAHKTLLLFRQMKQNDIEPNNLTFPFIAKACAKLSDLIYSQMIHGHIVKSPF-------------VK 87 (641)
Q Consensus 21 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~i~~~~~~~~~-------------~~ 87 (641)
.+..+...+.+.|++++|+..++.+.+... .+...+..+...+.+.|+++.|...+..+.+... ..
T Consensus 331 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 409 (899)
T TIGR02917 331 ARRLLASIQLRLGRVDEAIATLSPALGLDP-DDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLS 409 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence 455666666677777777777766665432 2344556666666666777766666666554332 44
Q ss_pred CCChhHHHHHhhccCC---CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHH
Q 048321 88 CDRLDCAYKIFDEMAV---RDVASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVH 164 (641)
Q Consensus 88 ~~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 164 (641)
.|++++|.+.|+.... .+...+..++..+.+.|++++|+.+++.+... .+++..++..+...+...|++++|.+.+
T Consensus 410 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 488 (899)
T TIGR02917 410 QGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAF 488 (899)
T ss_pred CCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHH
Confidence 5666777776665532 23345555666677777777777777777654 2445566777777777777777777777
Q ss_pred HHHHHHcCCCChhHHHHHHHHhHcCCChhHHHHHHhcccCC-CCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCCCCC
Q 048321 165 SFGIHIGVDADVSVCNTWISSYAKCDDLKMAELVFCGIEER-LRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLD 243 (641)
Q Consensus 165 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 243 (641)
..+.+.. +.+...+..+...+...|++++|.+.|+++... +.+..++..+...+.+.|+.++|...++++...+ +.+
T Consensus 489 ~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 566 (899)
T TIGR02917 489 EKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQE 566 (899)
T ss_pred HHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccc
Confidence 7776643 234455666667777777777777777776654 4456667777777777777777777777776543 234
Q ss_pred hhhHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC---CCCCcchHHHHHHHH
Q 048321 244 VTTVVSLLSSFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGI---CDRTRVSWTAMISGY 320 (641)
Q Consensus 244 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~ 320 (641)
...+..+...+...|++++|..+++.+.+.. +.+..++..+..+|.+.|++++|...|+.+ .+.+...|..+...+
T Consensus 567 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 645 (899)
T TIGR02917 567 IEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAY 645 (899)
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 4556666777777777777777777776543 455667777777777777777777777765 233455667777777
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH
Q 048321 321 AQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDAR 400 (641)
Q Consensus 321 ~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 400 (641)
.+.|++++|...|+++.+.. +.+..++..+...+...|++++|..+++.+.+.+ +.+...+..+...+.+.|++++|.
T Consensus 646 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~ 723 (899)
T TIGR02917 646 AVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAI 723 (899)
T ss_pred HHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHH
Confidence 77777777777777776542 2345566667777777777777777777777655 455666677777777777777777
Q ss_pred HHHhhCCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCC
Q 048321 401 ELFYALPE--KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGI 478 (641)
Q Consensus 401 ~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 478 (641)
+.|+.+.. |+..++..++..+.+.|++++|.+.++++.+.. +.+...+..+...|...|++++|.+.|+.+.+..+
T Consensus 724 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p- 801 (899)
T TIGR02917 724 QAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP- 801 (899)
T ss_pred HHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC-
Confidence 77777654 444566667777777777777777777777652 33444666666677777777777777777775433
Q ss_pred CCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHH
Q 048321 479 SYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEM 556 (641)
Q Consensus 479 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 556 (641)
++...+..++..+.+.|+ ++|+.+++++. ..| ++..+..+...+...|++++|...++++++.+|.++..+..+
T Consensus 802 ---~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l 877 (899)
T TIGR02917 802 ---DNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHL 877 (899)
T ss_pred ---CCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHH
Confidence 456677777777777777 66777777754 233 455666777777777777777777777777777777777777
Q ss_pred HHHHHhcCCchHHHHHHHHHH
Q 048321 557 ANKYALGGRWDGVANIRTMMK 577 (641)
Q Consensus 557 ~~~~~~~g~~~eA~~~~~~m~ 577 (641)
+.+|.+.|++++|.+++++|.
T Consensus 878 ~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 878 ALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHh
Confidence 777777788887777777764
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-33 Score=317.20 Aligned_cols=540 Identities=11% Similarity=0.064 Sum_probs=331.5
Q ss_pred HHHHhCCChhHHHHHHHHhHhCCCCCCcc-cHHHHHHHHhccCCchHHhHHHHHHhhccC-------------cCCCChh
Q 048321 27 REAVNKNEAHKTLLLFRQMKQNDIEPNNL-TFPFIAKACAKLSDLIYSQMIHGHIVKSPF-------------VKCDRLD 92 (641)
Q Consensus 27 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~~~~i~~~~~~~~~-------------~~~~~~~ 92 (641)
..+...|++++|+..|+++.+.+ |+.. .+..+-..+...|+++.+...+..+++... .+.|+++
T Consensus 269 ~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~ 346 (899)
T TIGR02917 269 LVDFQKKNYEDARETLQDALKSA--PEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVD 346 (899)
T ss_pred HHHHHhcCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHH
Confidence 34445666666666666665533 2211 222233334455666666655555544322 3455566
Q ss_pred HHHHHhhccC---CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHH
Q 048321 93 CAYKIFDEMA---VRDVASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIH 169 (641)
Q Consensus 93 ~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 169 (641)
+|...+..+. +.+...|+.+...+.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|...+..+.+
T Consensus 347 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 425 (899)
T TIGR02917 347 EAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQ 425 (899)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 6666655543 2234455555556666666666666666555432 11223344444444445555555555444444
Q ss_pred Hc---------------------------------CCCChhHHHHHHHHhHcCCChhHHHHHHhcccCC-CCCchhHHHH
Q 048321 170 IG---------------------------------VDADVSVCNTWISSYAKCDDLKMAELVFCGIEER-LRTVVSWNSM 215 (641)
Q Consensus 170 ~~---------------------------------~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l 215 (641)
.. .+++..++..+...|...|++++|.+.|+++... +.+...+..+
T Consensus 426 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 505 (899)
T TIGR02917 426 LDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANL 505 (899)
T ss_pred hCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 32 2234445555555555555555555555555443 3334445555
Q ss_pred HHHHhcCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 048321 216 VAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVVSLLSSFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDI 295 (641)
Q Consensus 216 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 295 (641)
...+...|++++|.+.|+++...+ +.+..++..+...+...|+.++|...+..+.+.+ +.+...+..++..|.+.|++
T Consensus 506 a~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 583 (899)
T TIGR02917 506 ARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQL 583 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCH
Confidence 555555556666666655555432 1234455555555555666666666666655543 33445555666666666666
Q ss_pred HHHHHHHhcCC---CCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHH
Q 048321 296 DSARVLFDGIC---DRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYAC 372 (641)
Q Consensus 296 ~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 372 (641)
++|..+++.+. +.+...|..+...|...|++++|...|+++.+.. +.+...+..+...+...|++++|..+++.+.
T Consensus 584 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 662 (899)
T TIGR02917 584 KKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRAL 662 (899)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66666666552 2344566666667777777777777777666542 2334455566666666677777777776666
Q ss_pred HcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhH
Q 048321 373 SGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTF 449 (641)
Q Consensus 373 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 449 (641)
+.. +.+...+..++..+...|++++|.++++.+.. .+...+..+...+...|++++|++.|+++... .|+..++
T Consensus 663 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~ 739 (899)
T TIGR02917 663 ELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNA 739 (899)
T ss_pred hcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHH
Confidence 543 44556666677777777777777777766654 24456666777777777777777777777765 4555666
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHH
Q 048321 450 LAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACK 527 (641)
Q Consensus 450 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~ 527 (641)
..+..++.+.|++++|.+.++.+.+..+ .+...+..++..|.+.|++++|.+.|+++. .++++.++..+...+.
T Consensus 740 ~~l~~~~~~~g~~~~A~~~~~~~l~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 815 (899)
T TIGR02917 740 IKLHRALLASGNTAEAVKTLEAWLKTHP----NDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYL 815 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 6777777778888888888777775433 556777778888888888888888888865 4446667888888888
Q ss_pred HcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048321 528 IHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRNQ 580 (641)
Q Consensus 528 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~~ 580 (641)
..|+ .+|+..+++++++.|+++..+..++.+|...|++++|.+.++++.+.+
T Consensus 816 ~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 816 ELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred hcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 8888 778888888888888888888888888888888888888888877653
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-24 Score=245.40 Aligned_cols=540 Identities=11% Similarity=0.024 Sum_probs=368.3
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHhHhCCCCCCcccHH-----------------HHHHHHhccCCchHHhHHHHHHhhc
Q 048321 21 QWNSQIREAVNKNEAHKTLLLFRQMKQNDIEPNNLTFP-----------------FIAKACAKLSDLIYSQMIHGHIVKS 83 (641)
Q Consensus 21 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~-----------------~ll~~~~~~~~~~~~~~i~~~~~~~ 83 (641)
.+..++..+.+.|+.++|.+.+++..+.. |+...+. .....+...|+++.|...+..+++.
T Consensus 64 ~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~ 141 (1157)
T PRK11447 64 VIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNG 141 (1157)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccC
Confidence 78888999999999999999999998854 5544332 2223567789999999888887765
Q ss_pred cC--------------cCCCChhHHHHHhhccCC--C-CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCC---------
Q 048321 84 PF--------------VKCDRLDCAYKIFDEMAV--R-DVASWNAMLVGFAQMGFLENVLRLFYNMRLVGI--------- 137 (641)
Q Consensus 84 ~~--------------~~~~~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~--------- 137 (641)
.. ...|+.++|.+.|+++.. | +...+..+...+...|++++|+..|+++.+...
T Consensus 142 ~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~ 221 (1157)
T PRK11447 142 APPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLW 221 (1157)
T ss_pred CCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHH
Confidence 32 234888899999988763 3 556788888889999999999999998754320
Q ss_pred ---------CCChh-hHHH----------------------------------HHHHHhccCChhHHHHHHHHHHHHcCC
Q 048321 138 ---------QADFV-TVMG----------------------------------LTQAAIHAKHLSLLKSVHSFGIHIGVD 173 (641)
Q Consensus 138 ---------~p~~~-t~~~----------------------------------ll~~~~~~~~~~~a~~~~~~~~~~~~~ 173 (641)
.|+.. .+.. .-..+...|++++|...++.+++.. +
T Consensus 222 ~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P 300 (1157)
T PRK11447 222 YGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-P 300 (1157)
T ss_pred HHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-C
Confidence 00000 0110 0122334566666666666666543 2
Q ss_pred CChhHHHHHHHHhHcCCChhHHHHHHhcccCCCCCc---hhHHHH------------HHHHhcCCCchHHHHHHHHHHHC
Q 048321 174 ADVSVCNTWISSYAKCDDLKMAELVFCGIEERLRTV---VSWNSM------------VAGCTYGDKFDDSLNFYRHMMYN 238 (641)
Q Consensus 174 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~ 238 (641)
.+...+..|...|.+.|++++|+..|++..+..|+. ..|..+ ...+.+.|++++|...|++..+.
T Consensus 301 ~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~ 380 (1157)
T PRK11447 301 KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV 380 (1157)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 245556666666666666666666666655432221 112111 22345566666666666666654
Q ss_pred CCCCChhhHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC---------
Q 048321 239 GFRLDVTTVVSLLSSFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGICDRT--------- 309 (641)
Q Consensus 239 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--------- 309 (641)
.. .+...+..+...+...|++++|.+.++.+++.. +.+...+..+...|. .++.++|..+++.+....
T Consensus 381 ~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~ 457 (1157)
T PRK11447 381 DN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIER 457 (1157)
T ss_pred CC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 21 233444455566666666666666666666553 233444555555553 345566666665553221
Q ss_pred ---cchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHH
Q 048321 310 ---RVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPD-LVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNA 385 (641)
Q Consensus 310 ---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 385 (641)
...+..+...+...|++++|++.|++..+. .|+ ...+..+...+...|+.++|...++.+.+.. +.+...+..
T Consensus 458 ~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a 534 (1157)
T PRK11447 458 SLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYA 534 (1157)
T ss_pred HhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHH
Confidence 112334556677788889999998888775 343 4456667777888899999999998887754 344555555
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCC----Ch---------hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHH
Q 048321 386 LIDMYSKCGSIGDARELFYALPEK----IV---------VSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAV 452 (641)
Q Consensus 386 li~~~~~~g~~~~A~~~~~~~~~~----~~---------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 452 (641)
+...+.+.++.++|...++.+... +. ..+..+...+...|+.++|+.+++. .+++...+..+
T Consensus 535 ~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~L 609 (1157)
T PRK11447 535 YGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTL 609 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHH
Confidence 566677888899999988887642 11 1123456678889999999998872 13444567778
Q ss_pred HHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCC-ChhHHHHHHHHHHHcC
Q 048321 453 LQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHL 530 (641)
Q Consensus 453 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g 530 (641)
...+...|++++|...|+.+.+..+ .+...+..++.+|...|++++|++.++... ..| +...+..+..++...|
T Consensus 610 a~~~~~~g~~~~A~~~y~~al~~~P----~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g 685 (1157)
T PRK11447 610 ADWAQQRGDYAAARAAYQRVLTREP----GNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALG 685 (1157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCC
Confidence 8899999999999999999996443 457888999999999999999999999877 444 4557778888899999
Q ss_pred CHHHHHHHHHHhHccCCCCCc------cHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048321 531 NIEIGEYVAYCLFKLEPHSAA------PYVEMANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 531 ~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
++++|...++++++..|+++. .+..++.++...|++++|.+.++....
T Consensus 686 ~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 686 DTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred CHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999999999998776543 555679999999999999999888753
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-22 Score=231.32 Aligned_cols=537 Identities=12% Similarity=-0.004 Sum_probs=279.4
Q ss_pred HHHHHHHhCCChhHHHHHHHHhHhCCCCCC-cccHHHHHHHHhccCCchHHhHHHHHHhhccCcCCCChhHHHHHhhc--
Q 048321 24 SQIREAVNKNEAHKTLLLFRQMKQNDIEPN-NLTFPFIAKACAKLSDLIYSQMIHGHIVKSPFVKCDRLDCAYKIFDE-- 100 (641)
Q Consensus 24 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~A~~~f~~-- 100 (641)
..++.+...++.+.|.+.++++... .|+ ...+..+...+.+.|+.+.|....+.+.+... +.. .+...-..
T Consensus 33 ~q~~~~~~~~~~d~a~~~l~kl~~~--~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P---~~~-~~~~~~~~~~ 106 (1157)
T PRK11447 33 EQVRLGEATHREDLVRQSLYRLELI--DPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAP---DSN-AYRSSRTTML 106 (1157)
T ss_pred HHHHHHHhhCChHHHHHHHHHHHcc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC---CCh-HHHHHHHHHH
Confidence 3445677889999999999999874 443 44666667777677777776666666655432 000 01100000
Q ss_pred cCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhh-HHHHHHHHhccCChhHHHHHHHHHHHHcCCCChhHH
Q 048321 101 MAVRDVASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVT-VMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVC 179 (641)
Q Consensus 101 ~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 179 (641)
...++....-.+...+.+.|++++|+..|+.+.+.+ +|+... ...........++.++|...++.+.+.. +.+...+
T Consensus 107 ~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~ 184 (1157)
T PRK11447 107 LSTPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLR 184 (1157)
T ss_pred hcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHH
Confidence 011222223344445667777777777777776542 233211 1111112224467777777777777653 2245566
Q ss_pred HHHHHHhHcCCChhHHHHHHhcccCCCCC----chh-----------------HHHHHHHHhcCCCchHHHHHHHHHHHC
Q 048321 180 NTWISSYAKCDDLKMAELVFCGIEERLRT----VVS-----------------WNSMVAGCTYGDKFDDSLNFYRHMMYN 238 (641)
Q Consensus 180 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~----~~~-----------------~~~li~~~~~~g~~~~A~~~~~~m~~~ 238 (641)
..+...+...|+.++|...|+++...++. ... +...+..+-.......|...+.++...
T Consensus 185 ~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~ 264 (1157)
T PRK11447 185 NTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQ 264 (1157)
T ss_pred HHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHh
Confidence 66777777777777777777766442110 000 111111111111122333333332222
Q ss_pred CCCCChhhHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CCc---chH
Q 048321 239 GFRLDVTTVVSLLSSFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGICD--RTR---VSW 313 (641)
Q Consensus 239 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~---~~~ 313 (641)
...|+... ......+...|++++|...++..++.. +.+..++..|..+|.+.|++++|+..|++..+ |+. ..|
T Consensus 265 ~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~ 342 (1157)
T PRK11447 265 LADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKW 342 (1157)
T ss_pred ccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHH
Confidence 11111111 111233344555555555555555543 33445555555555555555555555554421 111 111
Q ss_pred HH------------HHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchh
Q 048321 314 TA------------MISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVM 381 (641)
Q Consensus 314 ~~------------li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 381 (641)
.. ....+.+.|++++|...|++..+.. +.+...+..+...+...|++++|.+.++.+.+.. +.+..
T Consensus 343 ~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~ 420 (1157)
T PRK11447 343 ESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTN 420 (1157)
T ss_pred HHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH
Confidence 11 1223445555555555555555442 1223334444455555555555555555555433 22233
Q ss_pred HHHHHHHH------------------------------------------HHhcCCHHHHHHHHhhCCC--C-ChhHHHH
Q 048321 382 VCNALIDM------------------------------------------YSKCGSIGDARELFYALPE--K-IVVSWTT 416 (641)
Q Consensus 382 ~~~~li~~------------------------------------------~~~~g~~~~A~~~~~~~~~--~-~~~~~~~ 416 (641)
.+..+... +...|++++|.+.|++..+ | +...+..
T Consensus 421 a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~ 500 (1157)
T PRK11447 421 AVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYR 500 (1157)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 33334443 4444444444444444432 1 2233444
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCChh-hHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCCh---------hH
Q 048321 417 MIAGCALNGEFVEALDLFHQLMELDLRPNRV-TFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPEL---------DH 486 (641)
Q Consensus 417 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~---------~~ 486 (641)
+...|.+.|++++|+..++++.+. .|+.. .+..+...+...++.++|...++.+... . ..++. ..
T Consensus 501 LA~~~~~~G~~~~A~~~l~~al~~--~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~-~--~~~~~~~l~~~l~~~~ 575 (1157)
T PRK11447 501 LAQDLRQAGQRSQADALMRRLAQQ--KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRA-Q--WNSNIQELAQRLQSDQ 575 (1157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCch-h--cChhHHHHHHHHhhhH
Confidence 444444445555555555444432 22221 2222222233444444444444443210 0 01111 11
Q ss_pred HHHHHHHhhccCChHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCc
Q 048321 487 YSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRW 566 (641)
Q Consensus 487 ~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 566 (641)
+..+++.+...|++++|+++++.- ++++..+..+...+...|++++|+..++++++.+|+++..+..++.+|...|++
T Consensus 576 ~l~~a~~l~~~G~~~eA~~~l~~~--p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~ 653 (1157)
T PRK11447 576 VLETANRLRDSGKEAEAEALLRQQ--PPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDL 653 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhC--CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence 223445566777777777777743 345556777888889999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhC
Q 048321 567 DGVANIRTMMKRN 579 (641)
Q Consensus 567 ~eA~~~~~~m~~~ 579 (641)
++|.+.++.....
T Consensus 654 ~eA~~~l~~ll~~ 666 (1157)
T PRK11447 654 AAARAQLAKLPAT 666 (1157)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999877654
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-20 Score=204.61 Aligned_cols=529 Identities=9% Similarity=-0.045 Sum_probs=346.6
Q ss_pred CCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHhHHHHHHhhccC---------cCCCChhHHHHHhhccC
Q 048321 32 KNEAHKTLLLFRQMKQNDIEPNNLTFPFIAKACAKLSDLIYSQMIHGHIVKSPF---------VKCDRLDCAYKIFDEMA 102 (641)
Q Consensus 32 ~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~i~~~~~~~~~---------~~~~~~~~A~~~f~~~~ 102 (641)
.|++++|++.|++..+.... +...+..+.+.+...|+.+.|....+..++... ...++.++|..+++++.
T Consensus 57 ~Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i~~~~kA~~~ye~l~ 135 (987)
T PRK09782 57 NNDEATAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAIPVEVKSVTTVEELL 135 (987)
T ss_pred CCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHhccChhHHHHHHHHH
Confidence 37777777777777664333 244566666777777777777777777665444 33366777777777764
Q ss_pred --CC-CcccHHHHHHH--------HHhcCChhHHHHHHHHHHHcCCCCChhhHHHH-HHHHhccCChhHHHHHHHHHHHH
Q 048321 103 --VR-DVASWNAMLVG--------FAQMGFLENVLRLFYNMRLVGIQADFVTVMGL-TQAAIHAKHLSLLKSVHSFGIHI 170 (641)
Q Consensus 103 --~~-~~~~~~~li~~--------~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~l-l~~~~~~~~~~~a~~~~~~~~~~ 170 (641)
.| +...+..+... |.+. ++|.+.++ .......|+..+.... .+.+...++++++..++..+.+.
T Consensus 136 ~~~P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~ 211 (987)
T PRK09782 136 AQQKACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQ 211 (987)
T ss_pred HhCCCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhc
Confidence 22 33344333333 4444 34444443 3332233344444444 67777777777777777777776
Q ss_pred cCCCChhHHHHHHHHhHc-CCChhHHHHHHhcccCCCCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCCC-CChhhHH
Q 048321 171 GVDADVSVCNTWISSYAK-CDDLKMAELVFCGIEERLRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFR-LDVTTVV 248 (641)
Q Consensus 171 ~~~~~~~~~~~ll~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~ 248 (641)
+.. +..-...|..+|.. .++ +.+..+++.... .+...+..+...|.+.|+.++|.++++++...-.. |+..++.
T Consensus 212 ~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk--~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~ 287 (987)
T PRK09782 212 NTL-SAAERRQWFDVLLAGQLD-DRLLALQSQGIF--TDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWL 287 (987)
T ss_pred CCC-CHHHHHHHHHHHHHhhCH-HHHHHHhchhcc--cCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHH
Confidence 533 34445555566666 355 666666554322 56677777777777777777777777776543221 2222222
Q ss_pred HH------------------------------HHHhcCCCchHHHHHH-----------------------------HHH
Q 048321 249 SL------------------------------LSSFVCPEALVQGRLV-----------------------------HSH 269 (641)
Q Consensus 249 ~l------------------------------l~~~~~~~~~~~a~~~-----------------------------~~~ 269 (641)
.+ +..+.+.++++.++++ +..
T Consensus 288 ~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 367 (987)
T PRK09782 288 YLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARL 367 (987)
T ss_pred HHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHH
Confidence 21 2222233333322222 222
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CCc----chHHHHHHHHHhCCC---hhHHHHH--------
Q 048321 270 GIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGICD--RTR----VSWTAMISGYAQKGD---LDEALRL-------- 332 (641)
Q Consensus 270 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~li~~~~~~g~---~~~A~~~-------- 332 (641)
+.+.. +-+....-.+.-...+.|+.++|.++|+...+ ++. ..-+-++..|.+.+. ..++..+
T Consensus 368 ~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 446 (987)
T PRK09782 368 LYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAE 446 (987)
T ss_pred HHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccch
Confidence 22211 22333334444455677888999999887733 222 233456677776655 3333333
Q ss_pred --------------HHHHHH-cCCCC---CHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 048321 333 --------------FFAMEA-AGELP---DLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCG 394 (641)
Q Consensus 333 --------------~~~m~~-~~~~p---~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 394 (641)
+..... .+..| +...+..+..++.. ++.++|...+....... |+......+...+...|
T Consensus 447 ~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~G 523 (987)
T PRK09782 447 QRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVE 523 (987)
T ss_pred hHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCC
Confidence 111111 11223 44555555555554 78888999777777653 45444444555667899
Q ss_pred CHHHHHHHHhhCCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh-hHHHHHHHHhccCChHHHHHHHHH
Q 048321 395 SIGDARELFYALPE--KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRV-TFLAVLQACTHTGFLEKGWAISII 471 (641)
Q Consensus 395 ~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~ 471 (641)
++++|...|+++.. ++...+..+...+.+.|+.++|...|++..+.. |+.. .+..+...+...|++++|...++.
T Consensus 524 r~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~ 601 (987)
T PRK09782 524 DYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTR 601 (987)
T ss_pred CHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999998765 445567777888899999999999999999863 5543 333444455667999999999999
Q ss_pred HHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCC
Q 048321 472 QYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHS 549 (641)
Q Consensus 472 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 549 (641)
..+ +.|+...|..+..++.+.|++++|+..+++.. ..| +...+..+..++...|+.++|+..++++++++|++
T Consensus 602 AL~-----l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~ 676 (987)
T PRK09782 602 SLN-----IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDD 676 (987)
T ss_pred HHH-----hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 985 55788899999999999999999999999977 555 56678888889999999999999999999999999
Q ss_pred CccHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048321 550 AAPYVEMANKYALGGRWDGVANIRTMMKRNQ 580 (641)
Q Consensus 550 ~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~~ 580 (641)
+..+..++.+|...|++++|...+++..+..
T Consensus 677 ~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 677 PALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999887643
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.7e-23 Score=197.18 Aligned_cols=452 Identities=13% Similarity=0.081 Sum_probs=358.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHHcCCCChhHHHHHHHHhHcC
Q 048321 110 NAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISSYAKC 189 (641)
Q Consensus 110 ~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 189 (641)
..|..-..+.|++.+|.+.-...-.+. ..+..+...+-..+.+..+.+...+--...++.. +.-..+|..+.+.+-..
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHh
Confidence 345555667788888887665544332 1122222222233344444444433333333321 22456888899999999
Q ss_pred CChhHHHHHHhcccCC-CCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCCCCChhhHHH-HHHHhcCCCchHHHHHHH
Q 048321 190 DDLKMAELVFCGIEER-LRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVVS-LLSSFVCPEALVQGRLVH 267 (641)
Q Consensus 190 g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~~~~~~~~~~~a~~~~ 267 (641)
|++++|..+++.+.+. +..+..|..+..++...|+.+.|.+.|.+..+ +.|+.....+ +-......|++++|..-+
T Consensus 130 g~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~~cY 207 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAKACY 207 (966)
T ss_pred chHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhHHHH
Confidence 9999999999998887 55688999999999999999999999999877 4466555433 333334578899999888
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCc---chHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC
Q 048321 268 SHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGICDRTR---VSWTAMISGYAQKGDLDEALRLFFAMEAAGELPD 344 (641)
Q Consensus 268 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 344 (641)
.+.++.. +--..+|+.|...+-..|++..|+..|++..+-|+ .+|-.|...|...+.+++|+..|.+.... +|+
T Consensus 208 lkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn 284 (966)
T KOG4626|consen 208 LKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPN 284 (966)
T ss_pred HHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCc
Confidence 8887764 23357788999999999999999999998855443 47888999999999999999999887764 666
Q ss_pred H-HHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHH
Q 048321 345 L-VTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAG 420 (641)
Q Consensus 345 ~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 420 (641)
. +.+..+...|-..|.++.|+..+++.++.. +.-+..|+.|..++...|++.+|.+.++.... .-..+.+.|...
T Consensus 285 ~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni 363 (966)
T KOG4626|consen 285 HAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNI 363 (966)
T ss_pred chhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 4 567777778899999999999999998864 44478999999999999999999999998775 345688899999
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCChh-hHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCC-hhHHHHHHHHhhccC
Q 048321 421 CALNGEFVEALDLFHQLMELDLRPNRV-TFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPE-LDHYSCMADLLGRKG 498 (641)
Q Consensus 421 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 498 (641)
|...|.+++|..+|....+ +.|.-. .++.|...|-.+|++++|...|++..+ +.|+ ...|+.+...|-..|
T Consensus 364 ~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr-----I~P~fAda~~NmGnt~ke~g 436 (966)
T KOG4626|consen 364 YREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR-----IKPTFADALSNMGNTYKEMG 436 (966)
T ss_pred HHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh-----cCchHHHHHHhcchHHHHhh
Confidence 9999999999999999988 467754 899999999999999999999999986 7788 678999999999999
Q ss_pred ChHHHHHHHHhCC-CCCC-hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHH
Q 048321 499 KLKEALDFVQSMP-IKSD-AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMM 576 (641)
Q Consensus 499 ~~~~A~~~~~~~~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m 576 (641)
+.+.|++.+.+.. ..|. ....+.|.+.+...|+..+|+..++.++++.|+.+.+|-.+..++.-..+|.+--+.++++
T Consensus 437 ~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~~~kl 516 (966)
T KOG4626|consen 437 DVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKRMKKL 516 (966)
T ss_pred hHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHHHHHH
Confidence 9999999999876 5564 5588999999999999999999999999999999999999999888888887744444433
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.1e-20 Score=202.14 Aligned_cols=547 Identities=9% Similarity=-0.010 Sum_probs=388.4
Q ss_pred hHHhcccCCCChhhhHHHHHHHHHhCCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHhHHHHHHhhccC-
Q 048321 7 PPRLNRIYRSSTINQWNSQIREAVNKNEAHKTLLLFRQMKQNDIEPNNLTFPFIAKACAKLSDLIYSQMIHGHIVKSPF- 85 (641)
Q Consensus 7 ~~~f~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~i~~~~~~~~~- 85 (641)
+++.+..|.. .. .+..|...|.+.|++++|+..+++..+. .|+...|..++..+ ++...+..+++.+++...
T Consensus 68 ~~Al~~dP~n-~~-~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~~~ye~l~~~~P~ 140 (987)
T PRK09782 68 EYIHQQVPDN-IP-LTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSVTTVEELLAQQKA 140 (987)
T ss_pred HHHHHhCCCC-HH-HHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHHHHHHHHHHhCCC
Confidence 3444444443 44 7899999999999999999999999884 46656566655444 788888888888887554
Q ss_pred ----------c-------CCCChhHHHHHhh-ccCCC--CcccHHHH-HHHHHhcCChhHHHHHHHHHHHcCCCCChhhH
Q 048321 86 ----------V-------KCDRLDCAYKIFD-EMAVR--DVASWNAM-LVGFAQMGFLENVLRLFYNMRLVGIQADFVTV 144 (641)
Q Consensus 86 ----------~-------~~~~~~~A~~~f~-~~~~~--~~~~~~~l-i~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~ 144 (641)
. ...+.++|.+.++ +...| +..+.... ...|.+.|++++|++++.++.+.+ ..+..-.
T Consensus 141 n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~ 219 (987)
T PRK09782 141 CDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAER 219 (987)
T ss_pred ChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHH
Confidence 1 0233344444444 22233 34434444 889999999999999999999976 2333335
Q ss_pred HHHHHHHhc-cCChhHHHHHHHHHHHHcCCCChhHHHHHHHHhHcCCChhHHHHHHhcccCC---CCCchhHHHH-----
Q 048321 145 MGLTQAAIH-AKHLSLLKSVHSFGIHIGVDADVSVCNTWISSYAKCDDLKMAELVFCGIEER---LRTVVSWNSM----- 215 (641)
Q Consensus 145 ~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l----- 215 (641)
..+-.++.. .++ +.+..++.. .+..++.++..+.+.|.+.|+.++|.+++.+++.. .|...+|--+
T Consensus 220 ~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~ 294 (987)
T PRK09782 220 RQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYS 294 (987)
T ss_pred HHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhcc
Confidence 556566666 355 666666442 33468889999999999999999999999998765 2333332221
Q ss_pred -------------------------HHHHhcCCCchHHHHHHH-----------------------------HHHHCCCC
Q 048321 216 -------------------------VAGCTYGDKFDDSLNFYR-----------------------------HMMYNGFR 241 (641)
Q Consensus 216 -------------------------i~~~~~~g~~~~A~~~~~-----------------------------~m~~~g~~ 241 (641)
+.-+.+.+.++.+.++.. .|.+.. +
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~ 373 (987)
T PRK09782 295 ANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQE-P 373 (987)
T ss_pred CchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcC-C
Confidence 333444455544443311 111100 0
Q ss_pred CChhhHHHHHHHhcCCCchHHHHHHHHHHHHh-C-CCCchhHHHHHHHHHHhcCC---HHHHHHH---------------
Q 048321 242 LDVTTVVSLLSSFVCPEALVQGRLVHSHGIHY-G-FDLDVSVINTLISMYSKCGD---IDSARVL--------------- 301 (641)
Q Consensus 242 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g-~~~~~~~~~~li~~~~~~g~---~~~A~~~--------------- 301 (641)
-+....--+--.....|+.++|.+++...... + -..+....+-|+..|.+.+. ..++..+
T Consensus 374 ~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 453 (987)
T PRK09782 374 ANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQ 453 (987)
T ss_pred CCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhh
Confidence 01111111222234568888999998888763 1 23355566688888888876 3333222
Q ss_pred ----------HhcCC---CC--CcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHH
Q 048321 302 ----------FDGIC---DR--TRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKW 366 (641)
Q Consensus 302 ----------~~~~~---~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~ 366 (641)
+.... ++ +...|..+..++.. ++.++|+..|.+.... .|+......+...+...|++++|..
T Consensus 454 ~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~ 530 (987)
T PRK09782 454 LPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALA 530 (987)
T ss_pred hhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHH
Confidence 11111 22 45577888877776 8899999988887765 4676554444555578999999999
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHH---HHHHHHHcCChHHHHHHHHHHHHcCCC
Q 048321 367 FDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKIVVSWTT---MIAGCALNGEFVEALDLFHQLMELDLR 443 (641)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~g~~ 443 (641)
.++.+... +|+...+..+...+.+.|++++|...|+...+.++..++. +...+...|++++|+..|++..+. .
T Consensus 531 ~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~ 606 (987)
T PRK09782 531 AWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--A 606 (987)
T ss_pred HHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--C
Confidence 99987654 4444556677888999999999999999887643333333 333344559999999999999986 6
Q ss_pred CChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCC-ChhHHHH
Q 048321 444 PNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGT 521 (641)
Q Consensus 444 p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ 521 (641)
|+...+..+..++.+.|++++|...++......+ .+...+..+..++...|++++|++.+++.. ..| ++..+..
T Consensus 607 P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~P----d~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~n 682 (987)
T PRK09782 607 PSANAYVARATIYRQRHNVPAAVSDLRAALELEP----NNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQ 682 (987)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 7877888889999999999999999999996433 446788889999999999999999999976 445 6678999
Q ss_pred HHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048321 522 LLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 522 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
+..++...|++++|+..++++++++|++.......++++.+..+++.|.+-++..-.
T Consensus 683 LA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~ 739 (987)
T PRK09782 683 LAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWT 739 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999987765433
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.5e-19 Score=192.09 Aligned_cols=417 Identities=11% Similarity=-0.019 Sum_probs=268.4
Q ss_pred HHHHHhccCChhHHHHHHHHHHHHcCCCChhHHHHHHHHhHcCCChhHHHHHHhcccCC-CCCchhHHHHHHHHhcCCCc
Q 048321 147 LTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISSYAKCDDLKMAELVFCGIEER-LRTVVSWNSMVAGCTYGDKF 225 (641)
Q Consensus 147 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~ 225 (641)
.-..+...|+++.|...+...++. .|+...|..+..+|.+.|++++|...++..... +.+...|..+..+|...|++
T Consensus 133 ~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~ 210 (615)
T TIGR00990 133 KGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKY 210 (615)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCH
Confidence 334455556666666666665543 345555666666666666666666666666554 33455666666666666776
Q ss_pred hHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC
Q 048321 226 DDSLNFYRHMMYNGFRLDVTTVVSLLSSFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGI 305 (641)
Q Consensus 226 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 305 (641)
++|+..|......+- .+......++..... ..+........+.. +.+...+..+.. |...........-++..
T Consensus 211 ~eA~~~~~~~~~~~~-~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 283 (615)
T TIGR00990 211 ADALLDLTASCIIDG-FRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGLEDS 283 (615)
T ss_pred HHHHHHHHHHHHhCC-CccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhhhcc
Confidence 666666655433211 111111111111100 11111122222211 122222222222 21111111111111111
Q ss_pred CCCC---cchHHHHHHHH---HhCCChhHHHHHHHHHHHcC-CCCC-HHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCC
Q 048321 306 CDRT---RVSWTAMISGY---AQKGDLDEALRLFFAMEAAG-ELPD-LVTVLSMISGCGQSGALELGKWFDNYACSGGLK 377 (641)
Q Consensus 306 ~~~~---~~~~~~li~~~---~~~g~~~~A~~~~~~m~~~~-~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 377 (641)
.+.+ ...+..+...+ ...+++++|.+.|++....+ ..|+ ...+..+...+...|++++|...++..++.. +
T Consensus 284 ~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P 362 (615)
T TIGR00990 284 NELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-P 362 (615)
T ss_pred cccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-C
Confidence 1111 11111111111 23467899999999988764 2343 3456666677788999999999999988764 3
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh-hhHHHHH
Q 048321 378 DNVMVCNALIDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNR-VTFLAVL 453 (641)
Q Consensus 378 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll 453 (641)
.....|..+...+...|++++|...|+...+ .+...|..+...+...|++++|+..|++..+. .|+. ..+..+.
T Consensus 363 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la 440 (615)
T TIGR00990 363 RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLG 440 (615)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHH
Confidence 4466788888899999999999999987755 35778999999999999999999999999986 5654 4667777
Q ss_pred HHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCCCh-hH-------HHHHHH
Q 048321 454 QACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKSDA-GI-------WGTLLC 524 (641)
Q Consensus 454 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~-~~-------~~~ll~ 524 (641)
..+.+.|++++|...|+...+..+ .+...+..+..++...|++++|++.|++.. ..|+. .. ++..+.
T Consensus 441 ~~~~~~g~~~eA~~~~~~al~~~P----~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~ 516 (615)
T TIGR00990 441 VTQYKEGSIASSMATFRRCKKNFP----EAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALA 516 (615)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCC----CChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHH
Confidence 788999999999999999986433 447788999999999999999999999865 43421 11 112222
Q ss_pred HHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 525 ACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 525 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
.+...|++++|+..++++++++|++...+..++.+|.+.|++++|.+.+++..+.
T Consensus 517 ~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 517 LFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3344699999999999999999998889999999999999999999999987653
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-20 Score=182.51 Aligned_cols=418 Identities=11% Similarity=0.111 Sum_probs=336.3
Q ss_pred HHHHHhccCChhHHHHHHHHHHHHcCCCChhHHHHHHHHhHcCCChhHHHHHHhcccCC-CCCchhHHHHHHHHhcCCCc
Q 048321 147 LTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISSYAKCDDLKMAELVFCGIEER-LRTVVSWNSMVAGCTYGDKF 225 (641)
Q Consensus 147 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~ 225 (641)
+..-..+.|++++|++....+-... +.+....-.+-..+....+.+.....-....+. +.-..+|..+.+.+-..|+.
T Consensus 54 lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~ 132 (966)
T KOG4626|consen 54 LAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQL 132 (966)
T ss_pred HHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchH
Confidence 3344456678888877655544332 112222222235566666666544333222222 34577899999999999999
Q ss_pred hHHHHHHHHHHHCCCCC-ChhhHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCch-hHHHHHHHHHHhcCCHHHHHHHHh
Q 048321 226 DDSLNFYRHMMYNGFRL-DVTTVVSLLSSFVCPEALVQGRLVHSHGIHYGFDLDV-SVINTLISMYSKCGDIDSARVLFD 303 (641)
Q Consensus 226 ~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~ 303 (641)
++|+.+++.+.+. +| ....|..+..++...|+.+.|.+.|...++.+ |+. .+.+.+....-..|++++|...+.
T Consensus 133 ~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~cYl 208 (966)
T KOG4626|consen 133 QDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKACYL 208 (966)
T ss_pred HHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHHHH
Confidence 9999999999885 35 45778899999999999999999999988764 443 344456666677899999998887
Q ss_pred cCCC--C-CcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCc
Q 048321 304 GICD--R-TRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDL-VTVLSMISGCGQSGALELGKWFDNYACSGGLKDN 379 (641)
Q Consensus 304 ~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 379 (641)
+..+ | =.+.|+.|...+...|+...|+..|++..+. .|+- ..|..|...+...+.++.|...+.+..... +..
T Consensus 209 kAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~ 285 (966)
T KOG4626|consen 209 KAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNH 285 (966)
T ss_pred HHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Ccc
Confidence 6633 2 3468999999999999999999999998764 5653 467778888888888899988888877643 344
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh-hHHHHHHH
Q 048321 380 VMVCNALIDMYSKCGSIGDARELFYALPE--K-IVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRV-TFLAVLQA 455 (641)
Q Consensus 380 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~ 455 (641)
..++..+...|-..|.++.|...+++..+ | -...|+.|..++...|++.+|...|.+.+.. .|+.. ..+.|...
T Consensus 286 A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLgni 363 (966)
T KOG4626|consen 286 AVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLGNI 363 (966)
T ss_pred hhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHHHHH
Confidence 66777788889999999999999999876 3 3579999999999999999999999999985 67765 88999999
Q ss_pred HhccCChHHHHHHHHHHHhhhCCCCCCC-hhHHHHHHHHhhccCChHHHHHHHHhCC-CCCCh-hHHHHHHHHHHHcCCH
Q 048321 456 CTHTGFLEKGWAISIIQYDDKGISYNPE-LDHYSCMADLLGRKGKLKEALDFVQSMP-IKSDA-GIWGTLLCACKIHLNI 532 (641)
Q Consensus 456 ~~~~g~~~~a~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~-~~~~~ll~~~~~~g~~ 532 (641)
+...|.+++|..+|....+ +.|. ....+.|...|-++|++++|+..+++.. ++|+. ..++.+...|...|+.
T Consensus 364 ~~E~~~~e~A~~ly~~al~-----v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v 438 (966)
T KOG4626|consen 364 YREQGKIEEATRLYLKALE-----VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDV 438 (966)
T ss_pred HHHhccchHHHHHHHHHHh-----hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhH
Confidence 9999999999999999986 4465 6678999999999999999999999976 78864 4899999999999999
Q ss_pred HHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 533 EIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 533 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
+.|.+.+.+++.++|.-++++..|+.+|-.+|+..+|+.-+++...-
T Consensus 439 ~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 439 SAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL 485 (966)
T ss_pred HHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999999988887653
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-19 Score=184.60 Aligned_cols=293 Identities=13% Similarity=0.079 Sum_probs=202.5
Q ss_pred HHHhcCCHHHHHHHHhcCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC---HHHHHHHHHHhcCcCch
Q 048321 288 MYSKCGDIDSARVLFDGICD---RTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPD---LVTVLSMISGCGQSGAL 361 (641)
Q Consensus 288 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~t~~~ll~~~~~~~~~ 361 (641)
.+...|++++|...|+++.. .+..++..+...+...|++++|..+++.+...+..++ ...+..+...+...|++
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 34455666666666665522 2233555666666666666666666666655422221 13445555666666666
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC--------hhHHHHHHHHHHHcCChHHHHHH
Q 048321 362 ELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKI--------VVSWTTMIAGCALNGEFVEALDL 433 (641)
Q Consensus 362 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~li~~~~~~g~~~~A~~~ 433 (641)
+.|..++..+.+.. +.+..+++.++..|.+.|++++|.+.|+.+.+.+ ...|..+...+...|++++|+..
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 66666666666543 3455666677777777777777777777664411 12355667777888999999999
Q ss_pred HHHHHHcCCCCC-hhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-
Q 048321 434 FHQLMELDLRPN-RVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP- 511 (641)
Q Consensus 434 ~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 511 (641)
|+++.+. .|+ ...+..+...+.+.|++++|.++|+.+.+..+ ......+..++.+|.+.|++++|...++++.
T Consensus 203 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p---~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 203 LKKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQDP---EYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCh---hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9988875 344 34666777788889999999999998885321 1124567888889999999999999998876
Q ss_pred CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHh---cCCchHHHHHHHHHHhCCCccCCce
Q 048321 512 IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYAL---GGRWDGVANIRTMMKRNQVKKFPGQ 587 (641)
Q Consensus 512 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~eA~~~~~~m~~~~~~~~~~~ 587 (641)
..|+...+..+...+...|++++|..+++++++..|+++ .+..+...+.. .|+.++|..++++|.++++++.|.+
T Consensus 278 ~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 278 EYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCE
Confidence 567777778888889999999999999999999999865 44444544443 5689999999999998888877763
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.1e-19 Score=183.03 Aligned_cols=312 Identities=13% Similarity=0.064 Sum_probs=214.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHHcCCCC---hhHHHHHHHHhHcC
Q 048321 113 LVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDAD---VSVCNTWISSYAKC 189 (641)
Q Consensus 113 i~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~ 189 (641)
...+...|++++|+..|.++.+.+ +.+..++..+...+...|++++|..+++.+++.+..++ ..++..+...|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 334567889999999999998753 23344677788888888888888888888876432221 24567777888888
Q ss_pred CChhHHHHHHhcccCC-CCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCchHHHHHHHH
Q 048321 190 DDLKMAELVFCGIEER-LRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVVSLLSSFVCPEALVQGRLVHS 268 (641)
Q Consensus 190 g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 268 (641)
|+++.|..+|+++... +.+..+++.++..+.+.|++++|.+.++.+.+.+..++...
T Consensus 121 g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---------------------- 178 (389)
T PRK11788 121 GLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE---------------------- 178 (389)
T ss_pred CCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH----------------------
Confidence 8888888888887764 45566777888888888888888888887766432211100
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH
Q 048321 269 HGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGIC---DRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDL 345 (641)
Q Consensus 269 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 345 (641)
....+..+...+.+.|++++|...|+++. +.+...+..+...|.+.|++++|.+.|+++...+.....
T Consensus 179 ---------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 249 (389)
T PRK11788 179 ---------IAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLS 249 (389)
T ss_pred ---------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHH
Confidence 01123445566666777777777776652 223446667777788888888888888887765322223
Q ss_pred HHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhHHHHHHHHHHH
Q 048321 346 VTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE--KIVVSWTTMIAGCAL 423 (641)
Q Consensus 346 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~ 423 (641)
.++..+..++...|+.++|...++.+.+.. |+...+..++..+.+.|++++|..+|+++.+ |+..+++.++..+..
T Consensus 250 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~ 327 (389)
T PRK11788 250 EVLPKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLA 327 (389)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhh
Confidence 456677777777788888888777777653 4445557778888888888888888876654 677777777776664
Q ss_pred ---cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHH
Q 048321 424 ---NGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEK 464 (641)
Q Consensus 424 ---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 464 (641)
.|+.++++.++++|.+.++.|++. ..|.+.|....
T Consensus 328 ~~~~g~~~~a~~~~~~~~~~~~~~~p~------~~c~~cg~~~~ 365 (389)
T PRK11788 328 EAEEGRAKESLLLLRDLVGEQLKRKPR------YRCRNCGFTAR 365 (389)
T ss_pred ccCCccchhHHHHHHHHHHHHHhCCCC------EECCCCCCCCc
Confidence 457888888888888877777665 33666664433
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.3e-17 Score=168.26 Aligned_cols=564 Identities=12% Similarity=0.028 Sum_probs=399.4
Q ss_pred CchhHHhcccCC--CChhhhHHHHHHHHH--hCCChhHHHHHHHHhHhC--CCCCCcccHHHHHHHHhccCCchHHhHHH
Q 048321 4 SSLPPRLNRIYR--SSTINQWNSQIREAV--NKNEAHKTLLLFRQMKQN--DIEPNNLTFPFIAKACAKLSDLIYSQMIH 77 (641)
Q Consensus 4 ~~a~~~f~~~~~--~~~~~~~~~li~~~~--~~~~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~~~~~~~~~i~ 77 (641)
++|...|...-. |+.+ .-.+..++. ..+++..|+.+|...... ...||...- +=.++.+.++...|..-+
T Consensus 147 ~~A~a~F~~Vl~~sp~Ni--l~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIg--ig~Cf~kl~~~~~a~~a~ 222 (1018)
T KOG2002|consen 147 DDADAQFHFVLKQSPDNI--LALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIG--IGHCFWKLGMSEKALLAF 222 (1018)
T ss_pred HHHHHHHHHHHhhCCcch--HHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccch--hhhHHHhccchhhHHHHH
Confidence 456666654432 3322 344455554 467999999999997654 344555321 113334666777766666
Q ss_pred HHHhhccC----------------cCCCChhHHHHHhhcc---CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 048321 78 GHIVKSPF----------------VKCDRLDCAYKIFDEM---AVRDVASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQ 138 (641)
Q Consensus 78 ~~~~~~~~----------------~~~~~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~ 138 (641)
.++++..+ -....+..+..++... ...|++..|.|.+.|.-.|++..++.+...+...-..
T Consensus 223 ~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~ 302 (1018)
T KOG2002|consen 223 ERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTEN 302 (1018)
T ss_pred HHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhh
Confidence 66665443 2223455555555543 2458889999999999999999999999999875311
Q ss_pred --CChhhHHHHHHHHhccCChhHHHHHHHHHHHHcCCCChhHHHHHHHHhHcCCChhHHHHHHhcccCC-CCCchhHHHH
Q 048321 139 --ADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISSYAKCDDLKMAELVFCGIEER-LRTVVSWNSM 215 (641)
Q Consensus 139 --p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l 215 (641)
.-...|-.+-+++-..|+++.|...|....+.....-+..+-.|..+|.+.|+++.+...|+.+... +.+..+...|
T Consensus 303 ~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iL 382 (1018)
T KOG2002|consen 303 KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKIL 382 (1018)
T ss_pred hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 1233578888999999999999999988877542222334456789999999999999999998886 4456666677
Q ss_pred HHHHhcCC----CchHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCchHHHHHHHHH----HHHhCCCCchhHHHHHHH
Q 048321 216 VAGCTYGD----KFDDSLNFYRHMMYNGFRLDVTTVVSLLSSFVCPEALVQGRLVHSH----GIHYGFDLDVSVINTLIS 287 (641)
Q Consensus 216 i~~~~~~g----~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~----~~~~g~~~~~~~~~~li~ 287 (641)
...|...+ ..+.|..++.+..+.- +-|...|..+...+-. ++.......+.. +...+-.+.+.+.|.+..
T Consensus 383 G~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvas 460 (1018)
T KOG2002|consen 383 GCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNVAS 460 (1018)
T ss_pred HhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHH
Confidence 77777665 3466666666665532 2455566555555544 343333555544 445566688899999999
Q ss_pred HHHhcCCHHHHHHHHhcCCC-------CCc------chHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHH-HHHHHH
Q 048321 288 MYSKCGDIDSARVLFDGICD-------RTR------VSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVT-VLSMIS 353 (641)
Q Consensus 288 ~~~~~g~~~~A~~~~~~~~~-------~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t-~~~ll~ 353 (641)
.+...|+++.|...|+.... +|. .+--.+...+-..++++.|.+.|....+. .|.-++ |..+..
T Consensus 461 lhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ 538 (1018)
T KOG2002|consen 461 LHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGC 538 (1018)
T ss_pred HHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhH
Confidence 99999999999999976521 122 11223455566678999999999999886 466543 333333
Q ss_pred HhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CChhHHHHHHHHHHH-----
Q 048321 354 GCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE-----KIVVSWTTMIAGCAL----- 423 (641)
Q Consensus 354 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~----- 423 (641)
.....+...+|...+..+.... ..++.+++-+...|.+...+..|.+-|..+.+ +|..+.-+|.+.|.+
T Consensus 539 ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~ 617 (1018)
T KOG2002|consen 539 MARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNP 617 (1018)
T ss_pred HHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhccc
Confidence 3334567888988888888755 56677777788899998888888886655443 355555555554432
Q ss_pred -------cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhc
Q 048321 424 -------NGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGR 496 (641)
Q Consensus 424 -------~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 496 (641)
.+..++|+++|.+.++.. +-|...-+.+.-.++..|++.+|+.+|.+..+.. .....+|-.+.++|..
T Consensus 618 ~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~----~~~~dv~lNlah~~~e 692 (1018)
T KOG2002|consen 618 SRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT----SDFEDVWLNLAHCYVE 692 (1018)
T ss_pred ccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH----hhCCceeeeHHHHHHH
Confidence 245678999999998863 3355677888888999999999999999998643 2466788899999999
Q ss_pred cCChHHHHHHHHhCC----CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHH-------------
Q 048321 497 KGKLKEALDFVQSMP----IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANK------------- 559 (641)
Q Consensus 497 ~g~~~~A~~~~~~~~----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~------------- 559 (641)
+|++-.|+++|+... .+.+..+...|..++...|.+.+|.+.+..+..+.|.++..-+.++-+
T Consensus 693 ~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k 772 (1018)
T KOG2002|consen 693 QGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEK 772 (1018)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhccc
Confidence 999999999999854 344677899999999999999999999999999999998877766644
Q ss_pred ------HHhcCCchHHHHHHHHHHhCCC
Q 048321 560 ------YALGGRWDGVANIRTMMKRNQV 581 (641)
Q Consensus 560 ------~~~~g~~~eA~~~~~~m~~~~~ 581 (641)
....+..++|.++|..|...+-
T Consensus 773 ~t~eev~~a~~~le~a~r~F~~ls~~~d 800 (1018)
T KOG2002|consen 773 RTLEEVLEAVKELEEARRLFTELSKNGD 800 (1018)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3445667788888888877553
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.4e-18 Score=180.95 Aligned_cols=354 Identities=11% Similarity=-0.026 Sum_probs=276.9
Q ss_pred HcCCChhHHHHHHhcccCC----CCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCchHH
Q 048321 187 AKCDDLKMAELVFCGIEER----LRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVVSLLSSFVCPEALVQ 262 (641)
Q Consensus 187 ~~~g~~~~A~~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 262 (641)
.+..+++.-.-.|...++. ..+..-...++..+.+.|++++|..+++........+ ...+..++.++...|+++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHH
Confidence 4566777777777776664 1234445667788889999999999999988765433 3344445566667999999
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCcchHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 048321 263 GRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGIC---DRTRVSWTAMISGYAQKGDLDEALRLFFAMEAA 339 (641)
Q Consensus 263 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 339 (641)
|...++.+.... +.+...+..+...+...|++++|...|++.. +.+...|..+...+...|++++|...++.+...
T Consensus 95 A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~ 173 (656)
T PRK15174 95 VLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQE 173 (656)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Confidence 999999998875 5567788889999999999999999998873 345668888999999999999999999988765
Q ss_pred CCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHH
Q 048321 340 GELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KIVVSWTT 416 (641)
Q Consensus 340 ~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ 416 (641)
...+.. .+.. +..+...|++++|...++.+.+....++......+...+.+.|++++|...|+.... .+...+..
T Consensus 174 ~P~~~~-a~~~-~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 251 (656)
T PRK15174 174 VPPRGD-MIAT-CLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRS 251 (656)
T ss_pred CCCCHH-HHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 432222 2222 334678899999999999988765334445556667888999999999999998765 35678888
Q ss_pred HHHHHHHcCChHH----HHHHHHHHHHcCCCCChh-hHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHH
Q 048321 417 MIAGCALNGEFVE----ALDLFHQLMELDLRPNRV-TFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMA 491 (641)
Q Consensus 417 li~~~~~~g~~~~----A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~ 491 (641)
+...+...|++++ |+..|++..+. .|+.. .+..+...+...|++++|...++.+.+..+ .+...+..+.
T Consensus 252 Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P----~~~~a~~~La 325 (656)
T PRK15174 252 LGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHP----DLPYVRAMYA 325 (656)
T ss_pred HHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC----CCHHHHHHHH
Confidence 9999999999986 89999999985 56654 788888899999999999999999986433 3356677888
Q ss_pred HHhhccCChHHHHHHHHhCC-CCCChhHH-HHHHHHHHHcCCHHHHHHHHHHhHccCCCCC
Q 048321 492 DLLGRKGKLKEALDFVQSMP-IKSDAGIW-GTLLCACKIHLNIEIGEYVAYCLFKLEPHSA 550 (641)
Q Consensus 492 ~~~~~~g~~~~A~~~~~~~~-~~p~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 550 (641)
.+|.+.|++++|++.++++. ..|+...+ ..+..++...|+.++|...++++++..|++.
T Consensus 326 ~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 326 RALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 99999999999999999877 56665443 3456678899999999999999999999853
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.3e-17 Score=178.82 Aligned_cols=399 Identities=11% Similarity=-0.012 Sum_probs=184.4
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHHcCCCChhHHHHHHHHhHcCCChhHHHHHHhcccCC-CCCchhHHHHHHHHhcCC
Q 048321 145 MGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISSYAKCDDLKMAELVFCGIEER-LRTVVSWNSMVAGCTYGD 223 (641)
Q Consensus 145 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g 223 (641)
.-.+......|+.++|.+++....... +.+...+..+...+...|++++|..+|++.... +.+...+..+...+...|
T Consensus 19 ~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g 97 (765)
T PRK10049 19 ADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAG 97 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 333444444455555555554444311 223334555555555555555555555554443 333444555555555555
Q ss_pred CchHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHh
Q 048321 224 KFDDSLNFYRHMMYNGFRLDVTTVVSLLSSFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFD 303 (641)
Q Consensus 224 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 303 (641)
++++|+..+++..+. .|+...+..+..++...|+.++|...++.+.+.. +.+..++..+..++...|..+.|++.++
T Consensus 98 ~~~eA~~~l~~~l~~--~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~ 174 (765)
T PRK10049 98 QYDEALVKAKQLVSG--APDKANLLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAID 174 (765)
T ss_pred CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 666666555555543 1222114444445555555555555555555543 3344455556666666777777777776
Q ss_pred cCCCCCcc--------hHHHHHHHHH-----hCCCh---hHHHHHHHHHHHc-CCCCCHH-HHH----HHHHHhcCcCch
Q 048321 304 GICDRTRV--------SWTAMISGYA-----QKGDL---DEALRLFFAMEAA-GELPDLV-TVL----SMISGCGQSGAL 361 (641)
Q Consensus 304 ~~~~~~~~--------~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~-~~~p~~~-t~~----~ll~~~~~~~~~ 361 (641)
.... ++. ....++.... ..+++ ++|++.++.+.+. ...|+.. .+. ..+.++...|+.
T Consensus 175 ~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~ 253 (765)
T PRK10049 175 DANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRY 253 (765)
T ss_pred hCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhH
Confidence 6543 111 1111111111 11122 4555555555532 1122211 110 001222334555
Q ss_pred HHHHHHHHHHHHcCCC-CchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC-------hhHHHHHHHHHHHcCChHHHHHH
Q 048321 362 ELGKWFDNYACSGGLK-DNVMVCNALIDMYSKCGSIGDARELFYALPEKI-------VVSWTTMIAGCALNGEFVEALDL 433 (641)
Q Consensus 362 ~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~ 433 (641)
++|+..|+.+.+.+.+ |+ .....+...|...|++++|...|+++...+ ...+..+..++...|++++|+++
T Consensus 254 ~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~ 332 (765)
T PRK10049 254 KDVISEYQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTV 332 (765)
T ss_pred HHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 5555555555544311 11 111113444555555555555555443211 11233333344455555555555
Q ss_pred HHHHHHcCCCCChh-hHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCC---hhHHHHHHHHhhccCChHHHHHHHHh
Q 048321 434 FHQLMELDLRPNRV-TFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPE---LDHYSCMADLLGRKGKLKEALDFVQS 509 (641)
Q Consensus 434 ~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~ 509 (641)
++++... .|... .+. ...-.|+ ...+..++..+...|++++|++++++
T Consensus 333 l~~~~~~--~P~~~~~~~--------------------------~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~ 384 (765)
T PRK10049 333 TAHTINN--SPPFLRLYG--------------------------SPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARE 384 (765)
T ss_pred HHHHhhc--CCceEeecC--------------------------CCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5555443 11100 000 0000122 12334444555555555555555555
Q ss_pred CC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHH
Q 048321 510 MP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMK 577 (641)
Q Consensus 510 ~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~ 577 (641)
+. .+.+...+..+...+...|+.++|+..++++++++|+++..+..++.++.+.|+|++|..+++.+.
T Consensus 385 al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll 454 (765)
T PRK10049 385 LAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVV 454 (765)
T ss_pred HHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 44 222344555555555555666666666666666666555555555555556666666665555554
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.7e-17 Score=181.19 Aligned_cols=372 Identities=9% Similarity=-0.036 Sum_probs=236.1
Q ss_pred CChhHHHHHHHHhHcCCChhHHHHHHhcccC-CCCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCCCCChhhHHHHHH
Q 048321 174 ADVSVCNTWISSYAKCDDLKMAELVFCGIEE-RLRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVVSLLS 252 (641)
Q Consensus 174 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 252 (641)
.+.....-.+......|+.++|++++.+... .+.+...+..+...+...|++++|.+++++..+.. +.+......+..
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~ 91 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLIL 91 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3455556677778888999999999988775 34555668888889999999999999999987742 233445566777
Q ss_pred HhcCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCcchHHHHHHHHHhCCChhHH
Q 048321 253 SFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGIC---DRTRVSWTAMISGYAQKGDLDEA 329 (641)
Q Consensus 253 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A 329 (641)
.+...|++++|...++.+++.. +.+.. +..+..++...|+.++|+..++++. +.+...+..+...+...+..++|
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~A 169 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPA 169 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHH
Confidence 7788888888888888888774 44555 7778888888888888888888772 23445566677777788888888
Q ss_pred HHHHHHHHHcCCCCCHH------HHHHHHHHhc-----CcCch---HHHHHHHHHHHHc-CCCCchhHHHHHHHHHHhcC
Q 048321 330 LRLFFAMEAAGELPDLV------TVLSMISGCG-----QSGAL---ELGKWFDNYACSG-GLKDNVMVCNALIDMYSKCG 394 (641)
Q Consensus 330 ~~~~~~m~~~~~~p~~~------t~~~ll~~~~-----~~~~~---~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g 394 (641)
++.++.... .|+.. ....++.... ..+++ +.|...++.+.+. ...|+.... +
T Consensus 170 l~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~--~-------- 236 (765)
T PRK10049 170 LGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATAD--Y-------- 236 (765)
T ss_pred HHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchH--H--------
Confidence 888775543 33310 0001111110 01111 3333333333321 011111000 0
Q ss_pred CHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CChhhHHHHHHHHhccCChHHHHHHHHHHH
Q 048321 395 SIGDARELFYALPEKIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLR-PNRVTFLAVLQACTHTGFLEKGWAISIIQY 473 (641)
Q Consensus 395 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 473 (641)
.......+..+...|++++|+..|+++.+.+.. |+.. -..+..+|...|++++|...|+.+.
T Consensus 237 ----------------~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a-~~~la~~yl~~g~~e~A~~~l~~~l 299 (765)
T PRK10049 237 ----------------QRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWA-QRWVASAYLKLHQPEKAQSILTELF 299 (765)
T ss_pred ----------------HHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHH-HHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 000001122334556666666666666654311 2221 1113445666666666666666655
Q ss_pred hhhCCCCCC--ChhHHHHHHHHhhccCChHHHHHHHHhCC-CC-------------CCh---hHHHHHHHHHHHcCCHHH
Q 048321 474 DDKGISYNP--ELDHYSCMADLLGRKGKLKEALDFVQSMP-IK-------------SDA---GIWGTLLCACKIHLNIEI 534 (641)
Q Consensus 474 ~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-------------p~~---~~~~~ll~~~~~~g~~~~ 534 (641)
+..+ ..+ .......+..++...|++++|..+++.+. .. |+. ..+..+...+...|+.++
T Consensus 300 ~~~p--~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~e 377 (765)
T PRK10049 300 YHPE--TIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQ 377 (765)
T ss_pred hcCC--CCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHH
Confidence 3222 111 12345555556666666666666666654 21 232 244566778889999999
Q ss_pred HHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048321 535 GEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRNQ 580 (641)
Q Consensus 535 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~~ 580 (641)
|+..+++++...|+++..+..++.++...|++++|++.+++..+..
T Consensus 378 A~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~ 423 (765)
T PRK10049 378 AEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLE 423 (765)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999887654
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.5e-17 Score=176.71 Aligned_cols=442 Identities=8% Similarity=-0.062 Sum_probs=305.7
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHHcCCCChhHHHHHHHHhH
Q 048321 108 SWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISSYA 187 (641)
Q Consensus 108 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 187 (641)
.+......+.+.|++++|+..|++..+ +.|+...|..+..++...|++++|...+..+++.. +.+...+..+..+|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 355667788899999999999999887 56888889999999999999999999999999864 235668888999999
Q ss_pred cCCChhHHHHHHhcccCCC-CCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCchHHHHHH
Q 048321 188 KCDDLKMAELVFCGIEERL-RTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVVSLLSSFVCPEALVQGRLV 266 (641)
Q Consensus 188 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 266 (641)
..|++++|...|....... .+......++..+.. ..+........+.. .++...+..+.. +...........-
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~ 279 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAG 279 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhh
Confidence 9999999998887654421 111111222221111 12223333332221 122222222211 1111111111111
Q ss_pred HHHHHHhCCCCch-hHHHHHHHH---HHhcCCHHHHHHHHhcCCC------CCcchHHHHHHHHHhCCChhHHHHHHHHH
Q 048321 267 HSHGIHYGFDLDV-SVINTLISM---YSKCGDIDSARVLFDGICD------RTRVSWTAMISGYAQKGDLDEALRLFFAM 336 (641)
Q Consensus 267 ~~~~~~~g~~~~~-~~~~~li~~---~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m 336 (641)
+....+ ..+.. ..+..+... ....+++++|.+.|+.... .+...|+.+...+...|++++|+..|++.
T Consensus 280 ~~~~~~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~ka 357 (615)
T TIGR00990 280 LEDSNE--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKS 357 (615)
T ss_pred hhcccc--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 111110 11110 111111111 1234688999999987643 23456888888899999999999999998
Q ss_pred HHcCCCCC-HHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChh
Q 048321 337 EAAGELPD-LVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KIVV 412 (641)
Q Consensus 337 ~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~ 412 (641)
.+. .|+ ...|..+...+...|++++|...++.+++.. +.+..++..+...|...|++++|...|++..+ .+..
T Consensus 358 l~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~ 434 (615)
T TIGR00990 358 IEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIF 434 (615)
T ss_pred HHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHH
Confidence 875 455 4577777888889999999999999998865 55678899999999999999999999998865 3567
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCCh-------
Q 048321 413 SWTTMIAGCALNGEFVEALDLFHQLMELDLRPN-RVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPEL------- 484 (641)
Q Consensus 413 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~------- 484 (641)
.|..+...+.+.|++++|+..|++..+. .|+ ...+..+...+...|++++|...|+...+. .|+.
T Consensus 435 ~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l-----~p~~~~~~~~~ 507 (615)
T TIGR00990 435 SHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL-----EKETKPMYMNV 507 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----CCccccccccH
Confidence 7888899999999999999999999875 465 457888888999999999999999998853 2321
Q ss_pred -hHHHHHHHHhhccCChHHHHHHHHhCC-CCCC-hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHH
Q 048321 485 -DHYSCMADLLGRKGKLKEALDFVQSMP-IKSD-AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYA 561 (641)
Q Consensus 485 -~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 561 (641)
..++.....+...|++++|.+++++.. ..|+ ...+..+...+...|++++|+..++++.++.+.... ..
T Consensus 508 ~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e--------~~ 579 (615)
T TIGR00990 508 LPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE--------LV 579 (615)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH--------HH
Confidence 112222334445799999999999864 5554 457888999999999999999999999998776322 22
Q ss_pred hcCCchHHHHHHHHHHh
Q 048321 562 LGGRWDGVANIRTMMKR 578 (641)
Q Consensus 562 ~~g~~~eA~~~~~~m~~ 578 (641)
....|.+|.++....++
T Consensus 580 ~a~~~~~a~~~~~~~~~ 596 (615)
T TIGR00990 580 QAISYAEATRTQIQVQE 596 (615)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33356666666554443
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.4e-17 Score=174.89 Aligned_cols=327 Identities=8% Similarity=-0.082 Sum_probs=266.5
Q ss_pred ChhhHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC---CCCCcchHHHHHHH
Q 048321 243 DVTTVVSLLSSFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGI---CDRTRVSWTAMISG 319 (641)
Q Consensus 243 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~ 319 (641)
+......++..+.+.|+++.|..++..++.... -+......++.++...|++++|...|+++ .+.+...|..+...
T Consensus 41 ~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p-~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~ 119 (656)
T PRK15174 41 NEQNIILFAIACLRKDETDVGLTLLSDRVLTAK-NGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASV 119 (656)
T ss_pred cccCHHHHHHHHHhcCCcchhHHHhHHHHHhCC-CchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 344456677888899999999999999988763 34555666667777899999999999988 33456688889999
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHH
Q 048321 320 YAQKGDLDEALRLFFAMEAAGELPD-LVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGD 398 (641)
Q Consensus 320 ~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 398 (641)
+.+.|++++|...|++..+. .|+ ...+..+...+...|+.++|...+..+..... .+...+..+ ..+...|++++
T Consensus 120 l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P-~~~~a~~~~-~~l~~~g~~~e 195 (656)
T PRK15174 120 LLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP-PRGDMIATC-LSFLNKSRLPE 195 (656)
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-CCHHHHHHH-HHHHHcCCHHH
Confidence 99999999999999999875 444 55677788889999999999999998877542 233344333 34788999999
Q ss_pred HHHHHhhCCCC----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHhccCChHH----HHHHH
Q 048321 399 ARELFYALPEK----IVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNR-VTFLAVLQACTHTGFLEK----GWAIS 469 (641)
Q Consensus 399 A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~----a~~~~ 469 (641)
|...++.+.+. +...+..+...+...|++++|+..|+++.+. .|+. ..+..+...+...|++++ |...|
T Consensus 196 A~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~ 273 (656)
T PRK15174 196 DHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--GLDGAALRRSLGLAYYQSGRSREAKLQAAEHW 273 (656)
T ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHH
Confidence 99999987653 2334455677888999999999999999986 4554 467778889999999986 89999
Q ss_pred HHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCC
Q 048321 470 IIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEP 547 (641)
Q Consensus 470 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 547 (641)
+.+.+..+ .+...+..++..+.+.|++++|+..+++.. ..| +...+..+...+...|++++|+..++++++.+|
T Consensus 274 ~~Al~l~P----~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P 349 (656)
T PRK15174 274 RHALQFNS----DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKG 349 (656)
T ss_pred HHHHhhCC----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 99986433 457788999999999999999999999976 455 456788888999999999999999999999999
Q ss_pred CCCccHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048321 548 HSAAPYVEMANKYALGGRWDGVANIRTMMKRNQ 580 (641)
Q Consensus 548 ~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~~ 580 (641)
+++..+..++.+|...|++++|.+.+++..+..
T Consensus 350 ~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 350 VTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred cchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 987777778999999999999999999887654
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.9e-16 Score=158.14 Aligned_cols=533 Identities=10% Similarity=0.019 Sum_probs=375.6
Q ss_pred hhHHHHHHHHhHhCCCCCCcccHHHHHHHHh--ccCCchHHhHHHHHHhhccC--------------cCCCChhHHHHHh
Q 048321 35 AHKTLLLFRQMKQNDIEPNNLTFPFIAKACA--KLSDLIYSQMIHGHIVKSPF--------------VKCDRLDCAYKIF 98 (641)
Q Consensus 35 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~--~~~~~~~~~~i~~~~~~~~~--------------~~~~~~~~A~~~f 98 (641)
.+.|...|....+.. |+.. ...+-+||. ..+++..+..++..++.... +++++.+.|+..|
T Consensus 146 ~~~A~a~F~~Vl~~s--p~Ni-l~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~ 222 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS--PDNI-LALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAF 222 (1018)
T ss_pred HHHHHHHHHHHHhhC--Ccch-HHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHH
Confidence 478888888877643 3222 344555554 45678888888877654332 7788888998888
Q ss_pred hccCCCCcccHHHHHHHH---Hhc---CChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHHcC
Q 048321 99 DEMAVRDVASWNAMLVGF---AQM---GFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGV 172 (641)
Q Consensus 99 ~~~~~~~~~~~~~li~~~---~~~---g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 172 (641)
.+..+-|+..-++++... ... ..+..++.++...-... .-|+...+.|..-+...|++..+..+...++....
T Consensus 223 ~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~ 301 (1018)
T KOG2002|consen 223 ERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTE 301 (1018)
T ss_pred HHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhh
Confidence 887655554444444322 122 23455666665554432 34566778888888889999999999888887542
Q ss_pred CC--ChhHHHHHHHHhHcCCChhHHHHHHhcccCCCCC--chhHHHHHHHHhcCCCchHHHHHHHHHHHCCCCCChhhHH
Q 048321 173 DA--DVSVCNTWISSYAKCDDLKMAELVFCGIEERLRT--VVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVV 248 (641)
Q Consensus 173 ~~--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 248 (641)
.- -...|--+..+|...|+++.|...|.+.....++ +..+--+...|.+.|+++.+...|+...... +-+..|..
T Consensus 302 ~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~ 380 (1018)
T KOG2002|consen 302 NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMK 380 (1018)
T ss_pred hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHH
Confidence 21 1234566788899999999999999877665233 4456667888999999999999999987752 23445666
Q ss_pred HHHHHhcCCC----chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC--------CCCCcchHHHH
Q 048321 249 SLLSSFVCPE----ALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGI--------CDRTRVSWTAM 316 (641)
Q Consensus 249 ~ll~~~~~~~----~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~~~~~~~~l 316 (641)
.+...|+..+ ..+.|..+.....+.- +.|...|-.+..+|-...-+. ++.+|... ....+...|.+
T Consensus 381 iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~-sL~~~~~A~d~L~~~~~~ip~E~LNNv 458 (1018)
T KOG2002|consen 381 ILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWA-SLDAYGNALDILESKGKQIPPEVLNNV 458 (1018)
T ss_pred HHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHH-HHHHHHHHHHHHHHcCCCCCHHHHHhH
Confidence 6666666554 4566666666666554 556777777777776544332 24444322 33456678999
Q ss_pred HHHHHhCCChhHHHHHHHHHHHc---CCCCCH------HHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHH
Q 048321 317 ISGYAQKGDLDEALRLFFAMEAA---GELPDL------VTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALI 387 (641)
Q Consensus 317 i~~~~~~g~~~~A~~~~~~m~~~---~~~p~~------~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 387 (641)
...+...|++++|...|.+.... ...+|. .+-..+....-..++.+.|.+.|..+.+.. +.-+..|-.+.
T Consensus 459 aslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~ 537 (1018)
T KOG2002|consen 459 ASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLG 537 (1018)
T ss_pred HHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhh
Confidence 99999999999999999988654 222333 222334445566779999999999998864 33334444444
Q ss_pred HHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCChhhHHHHHHHHhc-----
Q 048321 388 DMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELD-LRPNRVTFLAVLQACTH----- 458 (641)
Q Consensus 388 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~----- 458 (641)
-+....++..+|...++.... .++..|+.+...+.....+..|.+-|+.....- ..+|..+..+|.+.|..
T Consensus 538 ~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~ 617 (1018)
T KOG2002|consen 538 CMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNP 617 (1018)
T ss_pred HHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhccc
Confidence 344445778899999988765 567788888888999999999998887776532 23566666666664433
Q ss_pred -------cCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHc
Q 048321 459 -------TGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIH 529 (641)
Q Consensus 459 -------~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~ 529 (641)
.+..++|+++|.++++..+ -+...-+-++-.++..|++.+|.++|.... ...+..+|..+...|...
T Consensus 618 ~rn~ek~kk~~~KAlq~y~kvL~~dp----kN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~ 693 (1018)
T KOG2002|consen 618 SRNPEKEKKHQEKALQLYGKVLRNDP----KNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQ 693 (1018)
T ss_pred ccChHHHHHHHHHHHHHHHHHHhcCc----chhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHH
Confidence 2457789999999886443 567777889999999999999999999976 333567899999999999
Q ss_pred CCHHHHHHHHHHhHccC--CCCCccHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 530 LNIEIGEYVAYCLFKLE--PHSAAPYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 530 g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
|++..|+++|+..++.. -+++....+|+.++.+.|+|.+|.+........
T Consensus 694 ~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 694 GQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred HHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 99999999999987653 346778889999999999999999988776654
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.2e-16 Score=142.53 Aligned_cols=435 Identities=13% Similarity=0.115 Sum_probs=276.0
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHh--ccCCchHHhHHHHHHhh---ccC-----cCCCC
Q 048321 21 QWNSQIREAVNKNEAHKTLLLFRQMKQNDIEPNNLTFPFIAKACA--KLSDLIYSQMIHGHIVK---SPF-----VKCDR 90 (641)
Q Consensus 21 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~--~~~~~~~~~~i~~~~~~---~~~-----~~~~~ 90 (641)
+=|.|+.. ...|.+..+.-+|+.|+..|+..+...-..+++..+ .+..+..+ -.++.+. .|- ++.|.
T Consensus 118 ~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~--E~~~Fv~~~~~~E~S~~sWK~G~ 194 (625)
T KOG4422|consen 118 TENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFA--EWEEFVGMRNFGEDSTSSWKSGA 194 (625)
T ss_pred chhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcch--hHHHHhhcccccccccccccccc
Confidence 55666554 567899999999999999998888877777766544 33333321 1122221 111 66777
Q ss_pred hhHHHHHhhccCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHH
Q 048321 91 LDCAYKIFDEMAVRDVASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHI 170 (641)
Q Consensus 91 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 170 (641)
+.+ -+|+ ..++...+|..||.++|+-...+.|.++|++-.....+.+..+||.+|.+-+-. ..+.+..+|+..
T Consensus 195 vAd--L~~E-~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisq 267 (625)
T KOG4422|consen 195 VAD--LLFE-TLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQ 267 (625)
T ss_pred HHH--HHHh-hcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHh
Confidence 665 4444 445566799999999999999999999999999888899999999999886543 348899999999
Q ss_pred cCCCChhHHHHHHHHhHcCCChhHHHHHHhcccCCCCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCCCCChhhHHHH
Q 048321 171 GVDADVSVCNTWISSYAKCDDLKMAELVFCGIEERLRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVVSL 250 (641)
Q Consensus 171 ~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 250 (641)
.+.||.+|+|+++++.++.|+++.|.+.+ ++++.+|++.|+.|...+|..+
T Consensus 268 km~Pnl~TfNalL~c~akfg~F~~ar~aa-----------------------------lqil~EmKeiGVePsLsSyh~i 318 (625)
T KOG4422|consen 268 KMTPNLFTFNALLSCAAKFGKFEDARKAA-----------------------------LQILGEMKEIGVEPSLSSYHLI 318 (625)
T ss_pred hcCCchHhHHHHHHHHHHhcchHHHHHHH-----------------------------HHHHHHHHHhCCCcchhhHHHH
Confidence 99999999999999999999998887553 4455666667777777777766
Q ss_pred HHHhcCCCchHH-HHHHHHHHHH----hCCC----CchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--------CC---c
Q 048321 251 LSSFVCPEALVQ-GRLVHSHGIH----YGFD----LDVSVINTLISMYSKCGDIDSARVLFDGICD--------RT---R 310 (641)
Q Consensus 251 l~~~~~~~~~~~-a~~~~~~~~~----~g~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~---~ 310 (641)
|..+++.++..+ +..+..++.. ..+. .|...+..-+..|.+..+.+-|.++-.-... ++ .
T Consensus 319 ik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~ 398 (625)
T KOG4422|consen 319 IKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRN 398 (625)
T ss_pred HHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHH
Confidence 666666665533 3333333322 1121 2334455555666666666666555433211 11 1
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 048321 311 VSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMY 390 (641)
Q Consensus 311 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 390 (641)
.-|..+....++....+.-+..|+.|.-.-.-|+..+...++.+....+.++...++|..++..|.........-++..+
T Consensus 399 fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L 478 (625)
T KOG4422|consen 399 FYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLL 478 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 23555666777777888888888888887778888888889998888888988888888888877544333333222222
Q ss_pred HhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHc-CChHHH-HHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHH
Q 048321 391 SKCGSIGDARELFYALPEKIVVSWTTMIAGCALN-GEFVEA-LDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAI 468 (641)
Q Consensus 391 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A-~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~ 468 (641)
++.. ..|+...-..+-...++. -++.++ ...-.+|++..+.| ...+.++..+.+.|..++|+++
T Consensus 479 ~~~k------------~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~--t~l~~ia~Ll~R~G~~qkA~e~ 544 (625)
T KOG4422|consen 479 ARDK------------LHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPA--TSLNCIAILLLRAGRTQKAWEM 544 (625)
T ss_pred hcCC------------CCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCCh--hHHHHHHHHHHHcchHHHHHHH
Confidence 2221 012211111111111110 112222 22334455543333 3455555566788888888888
Q ss_pred HHHHHhhhCCCCCCChhHHHHHH---HHhhccCChHHHHHHHHhC
Q 048321 469 SIIQYDDKGISYNPELDHYSCMA---DLLGRKGKLKEALDFVQSM 510 (641)
Q Consensus 469 ~~~~~~~~~~~~~p~~~~~~~l~---~~~~~~g~~~~A~~~~~~~ 510 (641)
|....+... -.|.....++|+ +.-.+......|..+++-|
T Consensus 545 l~l~~~~~~--~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 545 LGLFLRKHN--KIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred HHHHHhcCC--cCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 888764444 334444444433 4444555555565555554
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.3e-16 Score=165.35 Aligned_cols=426 Identities=9% Similarity=-0.052 Sum_probs=272.8
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCChh-hHHHHHHHHhccCChhHHHHHHHHHHHHcCCCChhHHHHHHHHhHcCCChhH
Q 048321 116 FAQMGFLENVLRLFYNMRLVGIQADFV-TVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISSYAKCDDLKM 194 (641)
Q Consensus 116 ~~~~g~~~~a~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 194 (641)
..+.|++..|++.|++..+. .|+.. ....++..+...|+.++|...+++... ..+........+...|...|++++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~-p~n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKA--GPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQS-SMNISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhh--CccchhhHHHHHHHHHHcCCcHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHcCCHHH
Confidence 45566666666666666553 34431 112555555566666666666666651 001111222222345666666777
Q ss_pred HHHHHhcccCC-CCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCchHHHHHHHHHHHHh
Q 048321 195 AELVFCGIEER-LRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVVSLLSSFVCPEALVQGRLVHSHGIHY 273 (641)
Q Consensus 195 A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 273 (641)
|.++|+++.+. +.+...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|.+.++.+++.
T Consensus 121 Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 121 ALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 77776666665 444555556666666666677777666666553 244444433333333344454466666666666
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC-Ccch--H------HHHHHHH-----HhCCC---hhHHHHHHHHH
Q 048321 274 GFDLDVSVINTLISMYSKCGDIDSARVLFDGICDR-TRVS--W------TAMISGY-----AQKGD---LDEALRLFFAM 336 (641)
Q Consensus 274 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~--~------~~li~~~-----~~~g~---~~~A~~~~~~m 336 (641)
. +.+...+..++....+.|-...|.++...-+.- +... | ..++..- ....+ .+.|+.-++.+
T Consensus 199 ~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l 277 (822)
T PRK14574 199 A-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNL 277 (822)
T ss_pred C-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHH
Confidence 4 445666666777777777777776666554211 0000 0 0011000 01122 34556666665
Q ss_pred HHc-CCCCCHH-----HHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCC-
Q 048321 337 EAA-GELPDLV-----TVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEK- 409 (641)
Q Consensus 337 ~~~-~~~p~~~-----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~- 409 (641)
... +..|... ...--+-++...++..+++..++.+...+.+....+-.++.++|...+++++|..+|..+...
T Consensus 278 ~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~ 357 (822)
T PRK14574 278 LTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSD 357 (822)
T ss_pred HhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcc
Confidence 542 2223321 222345567788899999999999998887666778889999999999999999999987442
Q ss_pred --------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-----------CCC--hh-hHHHHHHHHhccCChHHHHH
Q 048321 410 --------IVVSWTTMIAGCALNGEFVEALDLFHQLMELDL-----------RPN--RV-TFLAVLQACTHTGFLEKGWA 467 (641)
Q Consensus 410 --------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----------~p~--~~-t~~~ll~~~~~~g~~~~a~~ 467 (641)
+......|.-+|...+++++|..+++++.+.-. .|| -. .+..+...+...|++.+|++
T Consensus 358 ~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~ 437 (822)
T PRK14574 358 GKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQK 437 (822)
T ss_pred ccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHH
Confidence 233356788889999999999999999987311 122 22 23344557788899999999
Q ss_pred HHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCCC-hhHHHHHHHHHHHcCCHHHHHHHHHHhHcc
Q 048321 468 ISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKSD-AGIWGTLLCACKIHLNIEIGEYVAYCLFKL 545 (641)
Q Consensus 468 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 545 (641)
.++.+....+ -|......+.+++...|++.+|++.++... ..|+ ..+...++.+....|++++|..+.+.+.+.
T Consensus 438 ~le~l~~~aP----~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 438 KLEDLSSTAP----ANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHHHHHHhCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 9999986544 678888899999999999999999997766 5554 456677778888889999999999999999
Q ss_pred CCCCCc
Q 048321 546 EPHSAA 551 (641)
Q Consensus 546 ~p~~~~ 551 (641)
.|+++.
T Consensus 514 ~Pe~~~ 519 (822)
T PRK14574 514 SPEDIP 519 (822)
T ss_pred CCCchh
Confidence 998763
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.9e-15 Score=159.32 Aligned_cols=421 Identities=9% Similarity=-0.041 Sum_probs=307.4
Q ss_pred HhccCChhHHHHHHHHHHHHcCCCChhHHHHHHHHhHcCCChhHHHHHHhcccCCCCCchhHH-HH--HHHHhcCCCchH
Q 048321 151 AIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISSYAKCDDLKMAELVFCGIEERLRTVVSWN-SM--VAGCTYGDKFDD 227 (641)
Q Consensus 151 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~l--i~~~~~~g~~~~ 227 (641)
..+.|+++.|...+.++.+....-...++ .++..+...|+.++|+..+++... |+...+. .+ ...+...|++++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~--p~n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQS--SMNISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhcc--CCCCCHHHHHHHHHHHHHcCCHHH
Confidence 45789999999999999886433222345 888889999999999999999985 5443333 33 457888899999
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC-
Q 048321 228 SLNFYRHMMYNGFRLDVTTVVSLLSSFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGIC- 306 (641)
Q Consensus 228 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~- 306 (641)
|+++|+++.+... -+...+..++..+...++.++|.+.+..+.+. .|+...+..++..+...++..+|++.++++.
T Consensus 121 Aiely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 121 ALALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 9999999988642 23455667778889999999999999999876 3455555555555555666766999999883
Q ss_pred --CCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH------HHHHHHHHh---c--CcCc---hHHHHHHHHH
Q 048321 307 --DRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLV------TVLSMISGC---G--QSGA---LELGKWFDNY 370 (641)
Q Consensus 307 --~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~------t~~~ll~~~---~--~~~~---~~~a~~~~~~ 370 (641)
+.+...+..+..++.+.|-...|+++..+-... +.|... .....+..- . ...+ .+.|..-++.
T Consensus 198 ~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~ 276 (822)
T PRK14574 198 LAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQN 276 (822)
T ss_pred hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHH
Confidence 335557788888999999999999877653211 111110 011122111 0 1122 3444445555
Q ss_pred HHH-cCCCCc-hhH-HH---HHHHHHHhcCCHHHHHHHHhhCCCCC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 048321 371 ACS-GGLKDN-VMV-CN---ALIDMYSKCGSIGDARELFYALPEKI----VVSWTTMIAGCALNGEFVEALDLFHQLMEL 440 (641)
Q Consensus 371 ~~~-~~~~~~-~~~-~~---~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 440 (641)
+.. .+-.|. ... .. -.+-++.+.|++.++.+.|+.+.... ..+-..+..+|...+++++|+.+|+++...
T Consensus 277 l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~ 356 (822)
T PRK14574 277 LLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYS 356 (822)
T ss_pred HHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc
Confidence 444 222232 112 22 33556788999999999999998632 245667889999999999999999999764
Q ss_pred CC----CC-ChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCC----------CCCCC-hhHHHHHHHHhhccCChHHHH
Q 048321 441 DL----RP-NRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGI----------SYNPE-LDHYSCMADLLGRKGKLKEAL 504 (641)
Q Consensus 441 g~----~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~----------~~~p~-~~~~~~l~~~~~~~g~~~~A~ 504 (641)
.- .| +......|.-++..++++++|.++++.+.+..+. ...|| ...+..++..+...|++.+|+
T Consensus 357 ~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae 436 (822)
T PRK14574 357 DGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQ 436 (822)
T ss_pred cccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHH
Confidence 31 12 2223567888999999999999999999863220 01223 233455678889999999999
Q ss_pred HHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048321 505 DFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 505 ~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
+.++++. .+-|...+..+...+...|.+.+|+..++.+..++|++.......+.++.+.|+|.+|..+.+.+.+
T Consensus 437 ~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 437 KKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 9999987 4457889999999999999999999999999999999999999999999999999999998876644
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2e-15 Score=141.16 Aligned_cols=445 Identities=10% Similarity=0.052 Sum_probs=283.2
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCChhhHH-HHHHHHhccCChhHHHHHHHHHHHHcCCCCh----hHHHHHHHHhHc
Q 048321 114 VGFAQMGFLENVLRLFYNMRLVGIQADFVTVM-GLTQAAIHAKHLSLLKSVHSFGIHIGVDADV----SVCNTWISSYAK 188 (641)
Q Consensus 114 ~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~ 188 (641)
.-|..+.-..+|+..|+-..+....||...+- .+-..+.+.+.+..|...++..+..-...+. .+.+.+.-.+.+
T Consensus 209 qqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq 288 (840)
T KOG2003|consen 209 QQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQ 288 (840)
T ss_pred HHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEe
Confidence 34455556677777777777766666654332 1233445566677777777766654322222 233334445677
Q ss_pred CCChhHHHHHHhcccCCCCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCCCCChhhH--------HHHHHHhcCC---
Q 048321 189 CDDLKMAELVFCGIEERLRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTV--------VSLLSSFVCP--- 257 (641)
Q Consensus 189 ~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--------~~ll~~~~~~--- 257 (641)
.|.++.|+.-|+...+..||..+--.|+-++...|+-++..+.|.+|...-..||..-| ..|+.-..+.
T Consensus 289 ~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~l 368 (840)
T KOG2003|consen 289 AGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHL 368 (840)
T ss_pred cccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHH
Confidence 78888888888777665566555444455555667777777778877654322222211 1111111111
Q ss_pred ------C--chHHHHHHHHHHHHhCCCCchh-------------HHH--------HHHHHHHhcCCHHHHHHHHhcCCCC
Q 048321 258 ------E--ALVQGRLVHSHGIHYGFDLDVS-------------VIN--------TLISMYSKCGDIDSARVLFDGICDR 308 (641)
Q Consensus 258 ------~--~~~~a~~~~~~~~~~g~~~~~~-------------~~~--------~li~~~~~~g~~~~A~~~~~~~~~~ 308 (641)
+ +.+++.-.-..++.--+.|+-. .+. .-.--|.+.|+++.|.+++.-..+.
T Consensus 369 k~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~k 448 (840)
T KOG2003|consen 369 KNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKK 448 (840)
T ss_pred HHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhc
Confidence 1 1111111111111111222210 000 0112356677777777776666554
Q ss_pred CcchHHH----HHH-HHHh-CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhH
Q 048321 309 TRVSWTA----MIS-GYAQ-KGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMV 382 (641)
Q Consensus 309 ~~~~~~~----li~-~~~~-~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 382 (641)
|..+-++ |-. -|.+ -.++..|..+-+...... +-+....+.--......|++++|...+.+.+...-......
T Consensus 449 dnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~eal 527 (840)
T KOG2003|consen 449 DNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEAL 527 (840)
T ss_pred cchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHH
Confidence 4433222 111 1222 234455555444433221 22222222222233456899999999999987653333334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhcc
Q 048321 383 CNALIDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHT 459 (641)
Q Consensus 383 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 459 (641)
|| +.-.+-+.|++++|++.|-.+.. .++...-.+.+.|-...+...|++++.+.... ++.|+.....|...|-+.
T Consensus 528 fn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqe 605 (840)
T KOG2003|consen 528 FN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQE 605 (840)
T ss_pred HH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcc
Confidence 43 34457789999999999987654 67777788888999999999999999877664 344556788888899999
Q ss_pred CChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCCChhHHHHHHHHH-HHcCCHHHHHH
Q 048321 460 GFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKSDAGIWGTLLCAC-KIHLNIEIGEY 537 (641)
Q Consensus 460 g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~ll~~~-~~~g~~~~a~~ 537 (641)
|+-.+|.+.+-...+- ++.+.++...|..-|....-+++|+.+|++.. ..|+..-|..++..| ++.|+++.|..
T Consensus 606 gdksqafq~~ydsyry----fp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d 681 (840)
T KOG2003|consen 606 GDKSQAFQCHYDSYRY----FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFD 681 (840)
T ss_pred cchhhhhhhhhhcccc----cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHH
Confidence 9999999987766533 44789999999999999999999999999977 899999999999887 57899999999
Q ss_pred HHHHhHccCCCCCccHHHHHHHHHhcCC
Q 048321 538 VAYCLFKLEPHSAAPYVEMANKYALGGR 565 (641)
Q Consensus 538 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 565 (641)
.++..+...|.+....-.|+.+....|.
T Consensus 682 ~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 682 LYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHhCccchHHHHHHHHHhccccc
Confidence 9999999999999999999999888874
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.5e-12 Score=127.76 Aligned_cols=528 Identities=12% Similarity=0.042 Sum_probs=319.8
Q ss_pred CChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHhHHHHHHhhccC---------cCCCChhHHHHHhhccCC
Q 048321 33 NEAHKTLLLFRQMKQNDIEPNNLTFPFIAKACAKLSDLIYSQMIHGHIVKSPF---------VKCDRLDCAYKIFDEMAV 103 (641)
Q Consensus 33 ~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~i~~~~~~~~~---------~~~~~~~~A~~~f~~~~~ 103 (641)
++..+|..+++..++.+.. ++..|..-.+.=-..|.+..|+.+...-.+... ++....+.|..+.....+
T Consensus 265 ~DikKaR~llKSvretnP~-hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLeaiRLhp~d~aK~vvA~Avr 343 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRETNPK-HPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEAIRLHPPDVAKTVVANAVR 343 (913)
T ss_pred HHHHHHHHHHHHHHhcCCC-CCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 4667888888888876543 222333322222233444444333322221111 222333334444333222
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHHcCCCChhHHHHHH
Q 048321 104 RDVASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWI 183 (641)
Q Consensus 104 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 183 (641)
..+.+-..-+.+---..+...=.++++...+. .|+.+ .|=++.......+.|+-++..+.+.- +.+...|
T Consensus 344 ~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~--iP~sv---~LWKaAVelE~~~darilL~rAvecc-p~s~dLw---- 413 (913)
T KOG0495|consen 344 FLPTSVRLWLKAADLESDTKNKKRVLRKALEH--IPRSV---RLWKAAVELEEPEDARILLERAVECC-PQSMDLW---- 413 (913)
T ss_pred hCCCChhhhhhHHhhhhHHHHHHHHHHHHHHh--CCchH---HHHHHHHhccChHHHHHHHHHHHHhc-cchHHHH----
Confidence 11111111122111122233334555555553 34443 23345555667777888888887742 3233333
Q ss_pred HHhHcCCChhHHHHHHhcccCC-CCCchhHHHHHHHHhcCCCchHHHHHHHH----HHHCCCCCChhhHHHHHHHhcCCC
Q 048321 184 SSYAKCDDLKMAELVFCGIEER-LRTVVSWNSMVAGCTYGDKFDDSLNFYRH----MMYNGFRLDVTTVVSLLSSFVCPE 258 (641)
Q Consensus 184 ~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~g~~p~~~t~~~ll~~~~~~~ 258 (641)
-+|++..-++.|.+++++..+. +.+...|.+-...--.+|+.+...++..+ +...|+..+...|..=...|-..|
T Consensus 414 lAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ag 493 (913)
T KOG0495|consen 414 LALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAG 493 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcC
Confidence 4556677788899998888777 67788888777777778888888777654 445688888888888788888888
Q ss_pred chHHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhcCCHHHHHHHHhcC---CCCCcchHHHHHHHHHhCCChhHHHHHH
Q 048321 259 ALVQGRLVHSHGIHYGFDLD--VSVINTLISMYSKCGDIDSARVLFDGI---CDRTRVSWTAMISGYAQKGDLDEALRLF 333 (641)
Q Consensus 259 ~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~ 333 (641)
..-.+..+...++..|+... -.+|..-...|.+.+.++-|+.+|... -..+...|......--..|..++...+|
T Consensus 494 sv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~All 573 (913)
T KOG0495|consen 494 SVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALL 573 (913)
T ss_pred ChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHH
Confidence 88888888888887776543 356777777788888888888777654 2334556666666666667777777777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCh
Q 048321 334 FAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE--KIV 411 (641)
Q Consensus 334 ~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~ 411 (641)
++.... ++-....+.......-..|++..|..++..+.+.. +.+..+|.+-+........++.|+.+|.+... +..
T Consensus 574 qkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~sgTe 651 (913)
T KOG0495|consen 574 QKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSISGTE 651 (913)
T ss_pred HHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcc
Confidence 777665 22233344444444556677777777777777765 34666777777777777777777777776654 445
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh-hHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHH
Q 048321 412 VSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRV-TFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCM 490 (641)
Q Consensus 412 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l 490 (641)
..|.--+...--.+..++|++++++.++. -|+-. .|..+...+.+.++++.|+..|..-.+.. +-.+..|-.+
T Consensus 652 Rv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~c----P~~ipLWllL 725 (913)
T KOG0495|consen 652 RVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKC----PNSIPLWLLL 725 (913)
T ss_pred hhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccC----CCCchHHHHH
Confidence 55655555555567777777777777664 56654 55555556677777777777666554322 2335556666
Q ss_pred HHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCC--------------------
Q 048321 491 ADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPH-------------------- 548 (641)
Q Consensus 491 ~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~-------------------- 548 (641)
.++=.+.|.+-.|..++++.. .+.|...|...+..-.+.|+.++|..++.++++--|.
T Consensus 726 akleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTk 805 (913)
T KOG0495|consen 726 AKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTK 805 (913)
T ss_pred HHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchH
Confidence 666667777777777777654 3445666777777777777777776666555443222
Q ss_pred ----------CCccHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 549 ----------SAAPYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 549 ----------~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
|+.....++.++....+++.|++.|......
T Consensus 806 s~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~ 846 (913)
T KOG0495|consen 806 SIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKK 846 (913)
T ss_pred HHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 2344445566666666666666666655543
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.8e-12 Score=122.81 Aligned_cols=465 Identities=11% Similarity=0.063 Sum_probs=351.6
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHH----HHcCCCChhHHHHHHHHhHcC
Q 048321 114 VGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGI----HIGVDADVSVCNTWISSYAKC 189 (641)
Q Consensus 114 ~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~ll~~~~~~ 189 (641)
-+|++..-++.|..+++..++. ++-+...|.+..+.=-..|..+....+.+..+ ..|+..+..-|-.=...+-..
T Consensus 414 lAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~a 492 (913)
T KOG0495|consen 414 LALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDA 492 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhc
Confidence 3455556677888888877764 66667777777776677777777777765543 346666666666666666666
Q ss_pred CChhHHHHHHhcccCC----CCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCchHHHHH
Q 048321 190 DDLKMAELVFCGIEER----LRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVVSLLSSFVCPEALVQGRL 265 (641)
Q Consensus 190 g~~~~A~~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 265 (641)
|..-.+..+....... ..--.+|+.-...|.+.+.++-|..+|....+. ++-+...|......--..|..+.-..
T Consensus 493 gsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~A 571 (913)
T KOG0495|consen 493 GSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEA 571 (913)
T ss_pred CChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHH
Confidence 7666666666554432 122456777778888888888888888877663 22334445555554456677888888
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC---CCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCC
Q 048321 266 VHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGI---CDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEL 342 (641)
Q Consensus 266 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 342 (641)
+++.++..- +.....|-....-+...|++..|+.++... ...+...|-+-+.....+.+++.|..+|.+.... .
T Consensus 572 llqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--s 648 (913)
T KOG0495|consen 572 LLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--S 648 (913)
T ss_pred HHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--C
Confidence 888887764 445566677777788889999999888776 2335567888888889999999999999988764 5
Q ss_pred CCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhHHHHHHH
Q 048321 343 PDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE--K-IVVSWTTMIA 419 (641)
Q Consensus 343 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~ 419 (641)
|+...|.--+..---.++.++|.+++++.++. ++.-...|..+.+.+-..++++.|.+.|..-.+ | .+..|-.+..
T Consensus 649 gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLak 727 (913)
T KOG0495|consen 649 GTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAK 727 (913)
T ss_pred CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHH
Confidence 66655555555555578899999999888875 355567888889999999999999999887665 3 4567888888
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCC
Q 048321 420 GCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGK 499 (641)
Q Consensus 420 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 499 (641)
.--+.|....|..+|++.+-.+ +-|...|...+..=.+.|+.++|..+..++.++.+ .+...|..-|.+..+.++
T Consensus 728 leEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp----~sg~LWaEaI~le~~~~r 802 (913)
T KOG0495|consen 728 LEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQECP----SSGLLWAEAIWLEPRPQR 802 (913)
T ss_pred HHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----ccchhHHHHHHhccCccc
Confidence 8888899999999999998873 33456888889999999999999999999887654 677888888999989888
Q ss_pred hHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 500 LKEALDFVQSMPIKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 500 ~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
-..+.+.+++-. .|+.+..+....+.....++.|..-|.++++++|++-.+|..+-..+.+.|.-++-.+++......
T Consensus 803 kTks~DALkkce--~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~ 880 (913)
T KOG0495|consen 803 KTKSIDALKKCE--HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA 880 (913)
T ss_pred chHHHHHHHhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 888777777754 466677777788888899999999999999999999999999999999999999999998877654
Q ss_pred CCccCCceeEEEEC
Q 048321 580 QVKKFPGQSLFHIN 593 (641)
Q Consensus 580 ~~~~~~~~s~~~~~ 593 (641)
. +..|..|..+.
T Consensus 881 E--P~hG~~W~avS 892 (913)
T KOG0495|consen 881 E--PTHGELWQAVS 892 (913)
T ss_pred C--CCCCcHHHHHh
Confidence 3 34677776653
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.3e-13 Score=128.42 Aligned_cols=326 Identities=15% Similarity=0.118 Sum_probs=213.1
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHh--ccCChhHH-HHHHHHHHHHcCCCChhHHHH
Q 048321 105 DVASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAI--HAKHLSLL-KSVHSFGIHIGVDADVSVCNT 181 (641)
Q Consensus 105 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~--~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~ 181 (641)
.+.+=|.|+.. ...|....+.-+|+.|...|+......-..+++.-+ ...++--+ .+.|-.|.+.|-. +..+|
T Consensus 115 ~V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sW-- 190 (625)
T KOG4422|consen 115 QVETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSW-- 190 (625)
T ss_pred hhcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-ccccc--
Confidence 45567777764 457889999999999999997777666555554432 22222211 1222233333322 22222
Q ss_pred HHHHhHcCCChhHHHHHHhcccCCCCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCchH
Q 048321 182 WISSYAKCDDLKMAELVFCGIEERLRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVVSLLSSFVCPEALV 261 (641)
Q Consensus 182 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 261 (641)
+.|++.+ -+|+..+ .+..+|..||.++++--..+.|.+++++......+.+..+||.+|.+.+ +.
T Consensus 191 ------K~G~vAd--L~~E~~P---KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~ 255 (625)
T KOG4422|consen 191 ------KSGAVAD--LLFETLP---KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YS 255 (625)
T ss_pred ------ccccHHH--HHHhhcC---CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hh
Confidence 4454443 4455444 5788999999999999999999999999999888999999999998754 34
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCC
Q 048321 262 QGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGICDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGE 341 (641)
Q Consensus 262 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 341 (641)
..+.+..+|+...+.||..++|+++++..+.|+++.|.+. |++++.+|++.|+
T Consensus 256 ~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~a---------------------------alqil~EmKeiGV 308 (625)
T KOG4422|consen 256 VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKA---------------------------ALQILGEMKEIGV 308 (625)
T ss_pred ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHH---------------------------HHHHHHHHHHhCC
Confidence 4488999999999999999999999999999999887653 4455556666666
Q ss_pred CCCHHHHHHHHHHhcCcCchHH-HHHHHHHHHH----cCCCC----chhHHHHHHHHHHhcCCHHHHHHHHhhCCC----
Q 048321 342 LPDLVTVLSMISGCGQSGALEL-GKWFDNYACS----GGLKD----NVMVCNALIDMYSKCGSIGDARELFYALPE---- 408 (641)
Q Consensus 342 ~p~~~t~~~ll~~~~~~~~~~~-a~~~~~~~~~----~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---- 408 (641)
.|...+|..+|..+++.++..+ +..+..++.. ..+.| |...+..-++.+....+.+-|.++-.-...
T Consensus 309 ePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~ 388 (625)
T KOG4422|consen 309 EPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNW 388 (625)
T ss_pred CcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCch
Confidence 6666666666666555554422 2222222221 12221 333444445555555555555555443322
Q ss_pred ----C---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhC
Q 048321 409 ----K---IVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKG 477 (641)
Q Consensus 409 ----~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 477 (641)
+ ..+-|..+....|+....+.-+..|+.|.-.-+-|+..+...++.|....|.++-..+++..++ .+|
T Consensus 389 ~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~-~~g 463 (625)
T KOG4422|consen 389 KFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSK-EYG 463 (625)
T ss_pred hhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHH-Hhh
Confidence 1 1134555666667777777777777777766666777777777777777777777777777776 344
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.2e-16 Score=149.50 Aligned_cols=255 Identities=18% Similarity=0.112 Sum_probs=112.8
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHH-HHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 048321 317 ISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMI-SGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGS 395 (641)
Q Consensus 317 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 395 (641)
...+.+.|++++|++++++.......|+...|..++ ..+...++.+.|...++.+...+ +.++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccccc
Confidence 445566677777777775444332234444444333 34445667777777777777654 3355566667766 67888
Q ss_pred HHHHHHHHhhCCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCChhhHHHHHHHHhccCChHHHHHHHHHH
Q 048321 396 IGDARELFYALPE--KIVVSWTTMIAGCALNGEFVEALDLFHQLMELD-LRPNRVTFLAVLQACTHTGFLEKGWAISIIQ 472 (641)
Q Consensus 396 ~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 472 (641)
+++|.+++....+ ++...+..++..+...++++++.++++++.... .+++...|..+...+.+.|+.++|.+.+++.
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888888876644 456677888888899999999999999987643 2345556777778889999999999999999
Q ss_pred HhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCC
Q 048321 473 YDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSA 550 (641)
Q Consensus 473 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 550 (641)
.+..+ .+......++..+...|+.+++.++++... .+.|+..|..+..++...|+.++|...++++++..|+|+
T Consensus 173 l~~~P----~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 173 LELDP----DDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp HHH-T----T-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHcCC----CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 96432 347788899999999999999888887765 345777899999999999999999999999999999999
Q ss_pred ccHHHHHHHHHhcCCchHHHHHHHHHH
Q 048321 551 APYVEMANKYALGGRWDGVANIRTMMK 577 (641)
Q Consensus 551 ~~~~~l~~~~~~~g~~~eA~~~~~~m~ 577 (641)
.....+++++...|+.++|.+++++.-
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 999999999999999999999987754
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.6e-11 Score=122.98 Aligned_cols=473 Identities=12% Similarity=0.024 Sum_probs=298.3
Q ss_pred CCChhHHHHHhhccC---CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHH
Q 048321 88 CDRLDCAYKIFDEMA---VRDVASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVH 164 (641)
Q Consensus 88 ~~~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 164 (641)
.|+.++|.+++.++. +++...|-+|...|-+.|+.++++..+-..-.. .+-|...|..+-.-..+.|.+++|.-.+
T Consensus 152 rg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL-~p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL-NPKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred hCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 389999999999876 346788999999999999999998877665543 2445577888888889999999999999
Q ss_pred HHHHHHcCCCChhHHHHHHHHhHcCCChhHHHHHHhcccCCCC-C-ch----hHHHHHHHHhcCCCchHHHHHHHHHHHC
Q 048321 165 SFGIHIGVDADVSVCNTWISSYAKCDDLKMAELVFCGIEERLR-T-VV----SWNSMVAGCTYGDKFDDSLNFYRHMMYN 238 (641)
Q Consensus 165 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~-~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~ 238 (641)
.++++... ++....---...|-+.|+...|..-|.++....| . .. .--..+..+...++-+.|++.++.....
T Consensus 231 ~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 231 SRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 99998753 3444555567889999999999999988877522 1 11 1222355677777778888888877663
Q ss_pred -CCCCChhhHHHHHHHhcCCCchHHHHHHHHHHHHh---------------------------CCCCchhH-HHHHHHHH
Q 048321 239 -GFRLDVTTVVSLLSSFVCPEALVQGRLVHSHGIHY---------------------------GFDLDVSV-INTLISMY 289 (641)
Q Consensus 239 -g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~---------------------------g~~~~~~~-~~~li~~~ 289 (641)
+-..+...++.++..+.....++.+.......... ++.++..+ ...+--.-
T Consensus 310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~ 389 (895)
T KOG2076|consen 310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVH 389 (895)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhc
Confidence 23355566777777777777777776666555541 12233333 11111122
Q ss_pred HhcCCHHHHHHHHhcC----CCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHH
Q 048321 290 SKCGDIDSARVLFDGI----CDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGK 365 (641)
Q Consensus 290 ~~~g~~~~A~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~ 365 (641)
.+.+...+++..|-.- +..++..|..+..+|...|++.+|+.+|..+.....--+...|..+..++...|..+.|.
T Consensus 390 L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~ 469 (895)
T KOG2076|consen 390 LKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAI 469 (895)
T ss_pred ccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHH
Confidence 2333444444433221 222445678888899999999999999999887655556677888888888999999999
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChh------------HHHHHHHHHHHcCChHHHHHH
Q 048321 366 WFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKIVV------------SWTTMIAGCALNGEFVEALDL 433 (641)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~------------~~~~li~~~~~~g~~~~A~~~ 433 (641)
+.++.++... +.+..+--.|...|.+.|+.++|.+.+..+..||.. .--.....+.+.|+.++=+.+
T Consensus 470 e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t 548 (895)
T KOG2076|consen 470 EFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINT 548 (895)
T ss_pred HHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 9999988765 555667777888889999999999999987765521 112223445566776665544
Q ss_pred HHHHHHcC-----CCC-----------------ChhhHHHHHHHHhccCChHHHHHHH-----HHHHhhhCCCCCCC--h
Q 048321 434 FHQLMELD-----LRP-----------------NRVTFLAVLQACTHTGFLEKGWAIS-----IIQYDDKGISYNPE--L 484 (641)
Q Consensus 434 ~~~m~~~g-----~~p-----------------~~~t~~~ll~~~~~~g~~~~a~~~~-----~~~~~~~~~~~~p~--~ 484 (641)
-..|...+ +-| ...+...+..+-.+.++......-. .......+ +.-+ -
T Consensus 549 ~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~--Lsiddwf 626 (895)
T KOG2076|consen 549 ASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRG--LSIDDWF 626 (895)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhcc--CcHHHHH
Confidence 44443211 001 1112222222322222211111000 11111223 2222 2
Q ss_pred hHHHHHHHHhhccCChHHHHHHHHhCC-----CCCCh-h-HH-HHHHHHHHHcCCHHHHHHHHHHhHcc-----CCCCCc
Q 048321 485 DHYSCMADLLGRKGKLKEALDFVQSMP-----IKSDA-G-IW-GTLLCACKIHLNIEIGEYVAYCLFKL-----EPHSAA 551 (641)
Q Consensus 485 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p~~-~-~~-~~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~~~ 551 (641)
..+.-++..+.+.|++++|+.++..+. ..++. . .+ ...+.++...+++..|....+.++.. +|..+.
T Consensus 627 el~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~ 706 (895)
T KOG2076|consen 627 ELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLN 706 (895)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 455667777777777777777776654 22221 1 22 23344556667777777777766654 554444
Q ss_pred cHHHHHHHHHhcCC
Q 048321 552 PYVEMANKYALGGR 565 (641)
Q Consensus 552 ~~~~l~~~~~~~g~ 565 (641)
.|.+..+...+.|+
T Consensus 707 l~n~~~s~~~~~~q 720 (895)
T KOG2076|consen 707 LWNLDFSYFSKYGQ 720 (895)
T ss_pred HHHHHHHHHHHHHH
Confidence 55544444555444
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.8e-13 Score=128.30 Aligned_cols=428 Identities=11% Similarity=0.067 Sum_probs=295.6
Q ss_pred hHHHH---HHHHhccCChhHHHHHHHHHHHHcCCCChhHH-HHHHHHhHcCCChhHHHHHHhcccCCCCC------chhH
Q 048321 143 TVMGL---TQAAIHAKHLSLLKSVHSFGIHIGVDADVSVC-NTWISSYAKCDDLKMAELVFCGIEERLRT------VVSW 212 (641)
Q Consensus 143 t~~~l---l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~ll~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~ 212 (641)
||+.+ ..-|.......+|...++.+++...-|+.... ..+.+.|.+...+..|+++++......|+ +...
T Consensus 200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil 279 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKIL 279 (840)
T ss_pred hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHH
Confidence 45444 44455566678888899999888877776543 34557788999999999998776654333 3445
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCchHHHHHHHHHHHHhCCC------------Cchh
Q 048321 213 NSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVVSLLSSFVCPEALVQGRLVHSHGIHYGFD------------LDVS 280 (641)
Q Consensus 213 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~------------~~~~ 280 (641)
+.+--.+.+.|+++.|+.-|+...+. .||..+-..|+-++...|+-++.++.|..++..-.. |+..
T Consensus 280 ~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ 357 (840)
T KOG2003|consen 280 NNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDN 357 (840)
T ss_pred hhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchH
Confidence 66666789999999999999998774 488888777777778899999999999999865322 2333
Q ss_pred HHHHHH-----HHHHhcCC--HHHHH----HHHhcCCCCCcc---hHH------------------HHHHHHHhCCChhH
Q 048321 281 VINTLI-----SMYSKCGD--IDSAR----VLFDGICDRTRV---SWT------------------AMISGYAQKGDLDE 328 (641)
Q Consensus 281 ~~~~li-----~~~~~~g~--~~~A~----~~~~~~~~~~~~---~~~------------------~li~~~~~~g~~~~ 328 (641)
..+.-+ .-.-+..+ -++++ ++..-+..|+-. -|. .-..-|.++|+++.
T Consensus 358 ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~ 437 (840)
T KOG2003|consen 358 LLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEG 437 (840)
T ss_pred HHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHH
Confidence 333222 11222111 11111 222222223211 111 11234789999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHH--HHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhC
Q 048321 329 ALRLFFAMEAAGELPDLVTVLSMI--SGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYAL 406 (641)
Q Consensus 329 A~~~~~~m~~~~~~p~~~t~~~ll--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 406 (641)
|+++++-+.+..-+.-+..-+.|- .-...-.++..|.++-+..+... .-+....+.-...-...|++++|.+.+++.
T Consensus 438 aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykea 516 (840)
T KOG2003|consen 438 AIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEA 516 (840)
T ss_pred HHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHH
Confidence 999998887654433333322222 22222346677777766665432 222333222233345679999999999999
Q ss_pred CCCChhHHHHHHH---HHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCC
Q 048321 407 PEKIVVSWTTMIA---GCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPE 483 (641)
Q Consensus 407 ~~~~~~~~~~li~---~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~ 483 (641)
...|..+-.+|.+ .+-..|+.++|++.|-++..- +..+......+.+.|....+..+|++++-+.... ++.|
T Consensus 517 l~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl----ip~d 591 (840)
T KOG2003|consen 517 LNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL----IPND 591 (840)
T ss_pred HcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc----CCCC
Confidence 9888766555543 456789999999999888753 2345567778888999999999999998877642 4466
Q ss_pred hhHHHHHHHHhhccCChHHHHHHHHhC-C-CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHH
Q 048321 484 LDHYSCMADLLGRKGKLKEALDFVQSM-P-IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYA 561 (641)
Q Consensus 484 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 561 (641)
+...+.|.++|-+.|+-..|.+..-+- . ++.+..+..-|...|....-++.++..++++--+.|+.+..-.+++.++.
T Consensus 592 p~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~r 671 (840)
T KOG2003|consen 592 PAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFR 671 (840)
T ss_pred HHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 889999999999999999999876554 3 56677777667777777778899999999999999986555666778899
Q ss_pred hcCCchHHHHHHHHHHh
Q 048321 562 LGGRWDGVANIRTMMKR 578 (641)
Q Consensus 562 ~~g~~~eA~~~~~~m~~ 578 (641)
+.|+|..|.++++..-.
T Consensus 672 rsgnyqka~d~yk~~hr 688 (840)
T KOG2003|consen 672 RSGNYQKAFDLYKDIHR 688 (840)
T ss_pred hcccHHHHHHHHHHHHH
Confidence 99999999999987654
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.61 E-value=9.7e-12 Score=126.30 Aligned_cols=518 Identities=13% Similarity=0.039 Sum_probs=284.5
Q ss_pred HHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHhHHHHHHhhccC--------------cCCCChhHHHHHhhccCCCC
Q 048321 40 LLFRQMKQNDIEPNNLTFPFIAKACAKLSDLIYSQMIHGHIVKSPF--------------VKCDRLDCAYKIFDEMAVRD 105 (641)
Q Consensus 40 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~i~~~~~~~~~--------------~~~~~~~~A~~~f~~~~~~~ 105 (641)
.++..|...|+.||..||.+++.-||..|+.+.|- ++..|....+ ...++.+.+. .|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 45667777888888888888888888888887776 6666654333 1122222222 567
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHH-H---H----HcCCCCChhhHHHHHHHHhccC-C------hhHHHHHHHHHHHH
Q 048321 106 VASWNAMLVGFAQMGFLENVLRLFYN-M---R----LVGIQADFVTVMGLTQAAIHAK-H------LSLLKSVHSFGIHI 170 (641)
Q Consensus 106 ~~~~~~li~~~~~~g~~~~a~~l~~~-m---~----~~g~~p~~~t~~~ll~~~~~~~-~------~~~a~~~~~~~~~~ 170 (641)
..+|+.|..+|.+.|+... ++..++ | . ..|+.--..-|-..+.+|-..- + ..--+.+++..++.
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkl 161 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKL 161 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999765 322222 2 1 1232211122222222221110 0 00111223333333
Q ss_pred cC-CCChhHHHH---HHHHhHc-CCChhHHHHHHhcccCCCCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCCCCChh
Q 048321 171 GV-DADVSVCNT---WISSYAK-CDDLKMAELVFCGIEERLRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVT 245 (641)
Q Consensus 171 ~~-~~~~~~~~~---ll~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 245 (641)
+. .|....++. .++-... ...+++-...-....+ .+++.+|..++.+-..+|+.+.|..++.+|++.|++.+..
T Consensus 162 l~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e-~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~H 240 (1088)
T KOG4318|consen 162 LAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE-APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAH 240 (1088)
T ss_pred HhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc-CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccc
Confidence 31 111111111 1222211 1223333333333333 4899999999999999999999999999999999999999
Q ss_pred hHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhCCC
Q 048321 246 TVVSLLSSFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGICDRTRVSWTAMISGYAQKGD 325 (641)
Q Consensus 246 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 325 (641)
-|..++-+ .++...+..+..-|...|+.|+..|+..-+-.+.++|....+....+.-.--....+..+..+...+.+
T Consensus 241 yFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~ 317 (1088)
T KOG4318|consen 241 YFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKR 317 (1088)
T ss_pred cchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHH
Confidence 88888876 788899999999999999999999999888777776653333222111100111123333333211222
Q ss_pred hh-----HHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCC---CchhHHHHHHHHHHhcCCHH
Q 048321 326 LD-----EALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLK---DNVMVCNALIDMYSKCGSIG 397 (641)
Q Consensus 326 ~~-----~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 397 (641)
.+ -....+.+..-.|+......|..... ....|.-+...++...+...... .++..+..++
T Consensus 318 l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~l---------- 386 (1088)
T KOG4318|consen 318 LRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALL---------- 386 (1088)
T ss_pred HHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHH----------
Confidence 11 12222222222344433333433332 23367777777777766542221 1222333333
Q ss_pred HHHHHHhhCCCCChh-HHHHHHHHHHH---------------cCChHHHHHHHHHHHH----cCCCC-------ChhhHH
Q 048321 398 DARELFYALPEKIVV-SWTTMIAGCAL---------------NGEFVEALDLFHQLME----LDLRP-------NRVTFL 450 (641)
Q Consensus 398 ~A~~~~~~~~~~~~~-~~~~li~~~~~---------------~g~~~~A~~~~~~m~~----~g~~p-------~~~t~~ 450 (641)
...|.+...+... .++ .-.+... .-+...+++-+..+.. .-..| =...-+
T Consensus 387 --rqyFrr~e~~~~~~i~~-~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ 463 (1088)
T KOG4318|consen 387 --RQYFRRIERHICSRIYY-AGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIAN 463 (1088)
T ss_pred --HHHHHHHHhhHHHHHHH-HHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHH
Confidence 3344444332221 111 1111111 1111222221111111 00111 111334
Q ss_pred HHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-----CCCChhHHHHHHHH
Q 048321 451 AVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-----IKSDAGIWGTLLCA 525 (641)
Q Consensus 451 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p~~~~~~~ll~~ 525 (641)
.++..|++.-+..+++..-+... ..- + | ..|..||+.+....+.++|..+.++.. ..-|..-+..+...
T Consensus 464 ql~l~l~se~n~lK~l~~~ekye-~~l--f-~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dL 537 (1088)
T KOG4318|consen 464 QLHLTLNSEYNKLKILCDEEKYE-DLL--F-A--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDL 537 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHH--h-h--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHH
Confidence 45556666655666654433332 211 1 2 578999999999999999999998876 23345567777788
Q ss_pred HHHcCCHHHHHHHHHHhHc---cCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCceeEEE
Q 048321 526 CKIHLNIEIGEYVAYCLFK---LEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRNQVKKFPGQSLFH 591 (641)
Q Consensus 526 ~~~~g~~~~a~~~~~~~~~---~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~~~~~~~~~s~~~ 591 (641)
..+++....+..++++..+ ..|.-......+.+-....|+.+.-.++.+-+..-|+.. .|.-|..
T Consensus 538 L~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e-tgPl~~v 605 (1088)
T KOG4318|consen 538 LQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE-TGPLWMV 605 (1088)
T ss_pred HHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh-cccceEE
Confidence 8888888888888776654 233334455566677777888888888888888777765 3544443
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.6e-12 Score=131.06 Aligned_cols=328 Identities=13% Similarity=0.051 Sum_probs=199.2
Q ss_pred CchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC---CCCCcchHHHHHHHHHhCCChhHHHHHHH
Q 048321 258 EALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGI---CDRTRVSWTAMISGYAQKGDLDEALRLFF 334 (641)
Q Consensus 258 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 334 (641)
|++++|..++.++++.. +.+...|.+|...|-..|+.+++...+-.. .+.|...|..+.....+.|.+++|.-+|.
T Consensus 153 g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYS 231 (895)
T ss_pred CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 55555555555555554 344455556666666666666655544322 34444556655555566666666666666
Q ss_pred HHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHH----HHHHHHHhcCCHHHHHHHHhhCCC--
Q 048321 335 AMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCN----ALIDMYSKCGSIGDARELFYALPE-- 408 (641)
Q Consensus 335 ~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~li~~~~~~g~~~~A~~~~~~~~~-- 408 (641)
+.++.. +++...+..-...|-+.|+...|..-+.++.....+.|..-.. ..+..|...++-+.|.+.++....
T Consensus 232 rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~ 310 (895)
T KOG2076|consen 232 RAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKE 310 (895)
T ss_pred HHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhc
Confidence 655542 2222333333444555566666666555555543222222111 123444445555666666555443
Q ss_pred ---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCC---------------------------CCChhhHHHHHHHHhc
Q 048321 409 ---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDL---------------------------RPNRVTFLAVLQACTH 458 (641)
Q Consensus 409 ---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---------------------------~p~~~t~~~ll~~~~~ 458 (641)
-+...++.++..|.+...++.|......+..... .++... ..+.-++.+
T Consensus 311 ~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~ 389 (895)
T KOG2076|consen 311 KDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICLVH 389 (895)
T ss_pred cccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhhhc
Confidence 1234556666666666666666666666555111 122222 112222333
Q ss_pred cCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCCC-CC--ChhHHHHHHHHHHHcCCHHHH
Q 048321 459 TGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMPI-KS--DAGIWGTLLCACKIHLNIEIG 535 (641)
Q Consensus 459 ~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p--~~~~~~~ll~~~~~~g~~~~a 535 (641)
....+....+..... .......-+...|.-+.++|...|++.+|+.+|..+.. ++ +..+|-.+...+...|.+++|
T Consensus 390 L~~~e~~e~ll~~l~-~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A 468 (895)
T KOG2076|consen 390 LKERELLEALLHFLV-EDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEA 468 (895)
T ss_pred ccccchHHHHHHHHH-HhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHH
Confidence 333333333333333 22211334577888999999999999999999999872 22 466999999999999999999
Q ss_pred HHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCceeE
Q 048321 536 EYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRNQVKKFPGQSL 589 (641)
Q Consensus 536 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~~~~~~~~~s~ 589 (641)
.+.+++++.+.|++..+-+.|+.+|.+.|+.++|.+.++.+...+..+.+++.|
T Consensus 469 ~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~ 522 (895)
T KOG2076|consen 469 IEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAW 522 (895)
T ss_pred HHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccc
Confidence 999999999999999999999999999999999999999877555444455544
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.3e-12 Score=119.05 Aligned_cols=212 Identities=12% Similarity=0.048 Sum_probs=156.3
Q ss_pred cCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHH
Q 048321 358 SGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLF 434 (641)
Q Consensus 358 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 434 (641)
.|+.-.+..-++..++.... +...|--+..+|....+.++-.+.|+...+ .|..+|..-...+.-.+++++|..=|
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred cCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 46666677777777765422 222355566667777777777777777654 34556666556666667888888888
Q ss_pred HHHHHcCCCCCh-hhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-C
Q 048321 435 HQLMELDLRPNR-VTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-I 512 (641)
Q Consensus 435 ~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~ 512 (641)
++.+.. .|+. ..|..+-.+..+.+.++++...|+..+++++ ..++.|+.....+...++++.|.+.|+... .
T Consensus 418 ~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP----~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 418 QKAISL--DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFP----NCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHhhc--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----CCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 888874 5654 3666666677788888888888888887654 567788888888888888888888888754 4
Q ss_pred CCC---------hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHH
Q 048321 513 KSD---------AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMK 577 (641)
Q Consensus 513 ~p~---------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~ 577 (641)
.|+ +.+-.+++-. +-.+++.+|+.+++++++++|....+|..|+.+-.+.|+.++|+++|++..
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred ccccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 443 2222233322 344899999999999999999988999999999999999999999998754
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.4e-10 Score=107.39 Aligned_cols=481 Identities=10% Similarity=0.042 Sum_probs=349.2
Q ss_pred cCCCChhHHHHHhhccC---CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChh-hHHHHHHHHhccCChhHHH
Q 048321 86 VKCDRLDCAYKIFDEMA---VRDVASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFV-TVMGLTQAAIHAKHLSLLK 161 (641)
Q Consensus 86 ~~~~~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~ 161 (641)
-..+++..|+.+|++.. .++...|---+..=.++.+...|..+++.... +-|-+. .|-..+-.=-..|++..|+
T Consensus 84 esq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt--~lPRVdqlWyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVT--ILPRVDQLWYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred HhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHH--hcchHHHHHHHHHHHHHHhcccHHHH
Confidence 44577888999999865 45778888888888999999999999999876 345443 2333444445678999999
Q ss_pred HHHHHHHHHcCCCChhHHHHHHHHhHcCCChhHHHHHHhcccCCCCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCCC
Q 048321 162 SVHSFGIHIGVDADVSVCNTWISSYAKCDDLKMAELVFCGIEERLRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFR 241 (641)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 241 (641)
++|+.-.+ ..|+...|++.|+.=.+-..++.|..+++...-..|++.+|--...-=-++|+...|..+|....+. -
T Consensus 162 qiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~ 237 (677)
T KOG1915|consen 162 QIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--L 237 (677)
T ss_pred HHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--h
Confidence 99998876 5899999999999999999999999999987766699999999999889999999999999887763 1
Q ss_pred CChhhHHHHHHHh----cCCCchHHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhcCCHHHHHHHH--------hcCCC
Q 048321 242 LDVTTVVSLLSSF----VCPEALVQGRLVHSHGIHYGFDLD--VSVINTLISMYSKCGDIDSARVLF--------DGICD 307 (641)
Q Consensus 242 p~~~t~~~ll~~~----~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~--------~~~~~ 307 (641)
.|...-..++.++ .+...++.|.-++...+..- +.+ ...|..+...--+.|+.....+.. +.+..
T Consensus 238 ~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~ 316 (677)
T KOG1915|consen 238 GDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVS 316 (677)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHH
Confidence 2333333344444 34567888888888888763 223 456666666666667655444332 23323
Q ss_pred C---CcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH--H-----H---HHHHHHhcCcCchHHHHHHHHHHHHc
Q 048321 308 R---TRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLV--T-----V---LSMISGCGQSGALELGKWFDNYACSG 374 (641)
Q Consensus 308 ~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--t-----~---~~ll~~~~~~~~~~~a~~~~~~~~~~ 374 (641)
. |-.+|-..+..--..|+.+...++|++.+.. ++|-.. . | +..+-.-....+.+.+.++++..++.
T Consensus 317 ~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l 395 (677)
T KOG1915|consen 317 KNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL 395 (677)
T ss_pred hCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 3 4457777777778889999999999999865 455321 1 1 11122223567889999999999883
Q ss_pred CCCCchhHHHHHHHHH----HhcCCHHHHHHHHhhCCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhh
Q 048321 375 GLKDNVMVCNALIDMY----SKCGSIGDARELFYALPE--KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVT 448 (641)
Q Consensus 375 ~~~~~~~~~~~li~~~----~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 448 (641)
++....++.-+--+| .++.++..|.+++..... |...++..-|..-.+.++++....++++.++-+ +-|..+
T Consensus 396 -IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~ 473 (677)
T KOG1915|consen 396 -IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYA 473 (677)
T ss_pred -cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHH
Confidence 354555555554444 578899999999988765 677788888888889999999999999999964 345678
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCCChhHHHHHHHHHH
Q 048321 449 FLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKSDAGIWGTLLCACK 527 (641)
Q Consensus 449 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~ll~~~~ 527 (641)
+......=...|+.+.|+.+|..++.... +.-....|.+.|+.-...|.++.|..+++.+. ..+-..+|-++...-.
T Consensus 474 W~kyaElE~~LgdtdRaRaifelAi~qp~--ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~ 551 (677)
T KOG1915|consen 474 WSKYAELETSLGDTDRARAIFELAISQPA--LDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEA 551 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhcCcc--cccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhc
Confidence 88888777889999999999999985433 34445678899999999999999999999987 4455568877765433
Q ss_pred -----HcC-----------CHHHHHHHHHHhHc----cCCCC--CccHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048321 528 -----IHL-----------NIEIGEYVAYCLFK----LEPHS--AAPYVEMANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 528 -----~~g-----------~~~~a~~~~~~~~~----~~p~~--~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
..+ +...|..+|+++.. .+|.. ...+..+-+.=...|.-.+...+-..|+.
T Consensus 552 s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mPk 624 (677)
T KOG1915|consen 552 SASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMPK 624 (677)
T ss_pred cccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhccH
Confidence 334 56788888888754 33321 11222233344456766667777666654
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=7.2e-12 Score=126.34 Aligned_cols=275 Identities=10% Similarity=0.017 Sum_probs=193.4
Q ss_pred cCCHHHHHHHHhcCCCC--Cc-chHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHH--HHHHHhcCcCchHHHHH
Q 048321 292 CGDIDSARVLFDGICDR--TR-VSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVL--SMISGCGQSGALELGKW 366 (641)
Q Consensus 292 ~g~~~~A~~~~~~~~~~--~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~--~ll~~~~~~~~~~~a~~ 366 (641)
.|+++.|.+.+....+. ++ ..|-.......+.|+++.|...|.++.+. .|+..... .....+...|+.+.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 57888888777765332 12 22322334446788888888888888764 45543332 22445677788888888
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCh-----------hHHHHHHHHHHHcCChHHHHHHHH
Q 048321 367 FDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKIV-----------VSWTTMIAGCALNGEFVEALDLFH 435 (641)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~~~li~~~~~~g~~~~A~~~~~ 435 (641)
.++.+.+.. +.++.+...+...|.+.|++++|.+++..+.+... .+|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 888887766 55677888888888888888888888887775211 133334444444455566666666
Q ss_pred HHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCC
Q 048321 436 QLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKS 514 (641)
Q Consensus 436 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p 514 (641)
.+-+. .+.+......+..++...|+.++|..+++...+ .+ |+.... ++......++.+++++.+++.. ..|
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~-~~----~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P 325 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK-RQ----YDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHG 325 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cC----CCHHHH--HHHhhccCCChHHHHHHHHHHHhhCC
Confidence 66443 234556777888888999999999999888874 33 554322 2333345588999999888866 445
Q ss_pred -ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048321 515 -DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 515 -~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
|+....++...|...+++++|.+.++++++..|+ ...+..++.++.+.|+.++|.+.+++-..
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~-~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD-AYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4556778888999999999999999999999998 46678899999999999999998886543
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.4e-10 Score=104.81 Aligned_cols=460 Identities=10% Similarity=0.036 Sum_probs=341.1
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHHcCCCChhHHHHHHH
Q 048321 105 DVASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWIS 184 (641)
Q Consensus 105 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 184 (641)
+...|---..-=-..+++..|..+|+...... .-+...|..-+..=.+...+..|+.+++.++..-...| ..|--.+.
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~y 149 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHH
Confidence 34445444444455778889999999998754 44555566677777788899999999999988643333 34445556
Q ss_pred HhHcCCChhHHHHHHhcccCCCCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCchHHHH
Q 048321 185 SYAKCDDLKMAELVFCGIEERLRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVVSLLSSFVCPEALVQGR 264 (641)
Q Consensus 185 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 264 (641)
+=-..|++..|.++|+.-.+-.|+...|++.|.-=.+-+.++.|..+|+..+- +.|+..+|.--.+.=.+.|+...+.
T Consensus 150 mEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR 227 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALAR 227 (677)
T ss_pred HHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHH
Confidence 66778999999999999888789999999999999999999999999999876 4599999988888888999999999
Q ss_pred HHHHHHHHh-C-CCCchhHHHHHHHHHHhcCCHHHHHHHHhc----CCCCC-cchHHHHHHHHHhCCChhHHHHH-----
Q 048321 265 LVHSHGIHY-G-FDLDVSVINTLISMYSKCGDIDSARVLFDG----ICDRT-RVSWTAMISGYAQKGDLDEALRL----- 332 (641)
Q Consensus 265 ~~~~~~~~~-g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~----~~~~~-~~~~~~li~~~~~~g~~~~A~~~----- 332 (641)
.+++..++. | -..+...+.+....-.++..++.|.-+|.- +++.. ...|......--+-|+.....+.
T Consensus 228 ~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KR 307 (677)
T KOG1915|consen 228 SVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKR 307 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhh
Confidence 999998864 2 122345666666666778888999888753 33322 23444444444455654433332
Q ss_pred ---HHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCch--hHHHHHHH-----HH---HhcCCHHHH
Q 048321 333 ---FFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNV--MVCNALID-----MY---SKCGSIGDA 399 (641)
Q Consensus 333 ---~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~-----~~---~~~g~~~~A 399 (641)
|+.+... -+-|-.++.-.+..-...|+.+...++++..+..- +|-. ..|...|- ++ ....+++.+
T Consensus 308 k~qYE~~v~~-np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~ert 385 (677)
T KOG1915|consen 308 KFQYEKEVSK-NPYNYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVERT 385 (677)
T ss_pred hhHHHHHHHh-CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 2333333 24566677777777788899999999999998753 4421 12222221 11 346889999
Q ss_pred HHHHhhCCC--C-Ch----hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHH
Q 048321 400 RELFYALPE--K-IV----VSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQ 472 (641)
Q Consensus 400 ~~~~~~~~~--~-~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 472 (641)
.++|+...+ | .- ..|-.......++.+...|.+++...+ |.-|..-+|...|..=.+.+.++..+.+++..
T Consensus 386 r~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkf 463 (677)
T KOG1915|consen 386 RQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKF 463 (677)
T ss_pred HHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999987765 2 22 345555566677889999999998877 45899999999999989999999999999999
Q ss_pred HhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCCCCCC----hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCC
Q 048321 473 YDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMPIKSD----AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPH 548 (641)
Q Consensus 473 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 548 (641)
++ .+ +-+-.+|.....+-...|+.+.|..+|+-+..+|. ...|.+.+..-...|.++.|..+++++++..+.
T Consensus 464 le-~~---Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h 539 (677)
T KOG1915|consen 464 LE-FS---PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQH 539 (677)
T ss_pred Hh-cC---hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhccc
Confidence 95 33 24577888888888899999999999998875553 457888888888999999999999999998886
Q ss_pred CCccHHHHHHHHH-----hcC-----------CchHHHHHHHHHH
Q 048321 549 SAAPYVEMANKYA-----LGG-----------RWDGVANIRTMMK 577 (641)
Q Consensus 549 ~~~~~~~l~~~~~-----~~g-----------~~~eA~~~~~~m~ 577 (641)
...|...+.--. ..| ....|..+++...
T Consensus 540 -~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn 583 (677)
T KOG1915|consen 540 -VKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERAN 583 (677)
T ss_pred -chHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHH
Confidence 457777766544 344 5567777777653
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.4e-12 Score=125.90 Aligned_cols=224 Identities=14% Similarity=0.016 Sum_probs=130.9
Q ss_pred HHHHHhcCCHHHHHHHHhcCC---CCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchH
Q 048321 286 ISMYSKCGDIDSARVLFDGIC---DRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALE 362 (641)
Q Consensus 286 i~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~ 362 (641)
...+...|+++.|...++.+. +.+......+...|.+.|++++|.+++..+.+.+..++. .+..+-
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~---------- 228 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLE---------- 228 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHH----------
Confidence 445556666666666665552 223445556666666667777777777776665433221 111000
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 048321 363 LGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLME 439 (641)
Q Consensus 363 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 439 (641)
..+|..++.......+.+...++++.+++ .++.....+...+...|+.++|.+++++..+
T Consensus 229 -----------------~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~ 291 (398)
T PRK10747 229 -----------------QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK 291 (398)
T ss_pred -----------------HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 00111222222223344445555555543 3556666677777777777777777777766
Q ss_pred cCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCCChhH
Q 048321 440 LDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKSDAGI 518 (641)
Q Consensus 440 ~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~ 518 (641)
. .||.... ++.+....++.+++.+..+...+.++ -|...+.++...+.+.|++++|.+.|+.+. ..|+...
T Consensus 292 ~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P----~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~ 363 (398)
T PRK10747 292 R--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHG----DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD 363 (398)
T ss_pred c--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCC----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH
Confidence 3 4444211 22233344777777777777765433 445566777777777777777777777765 6677777
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhHcc
Q 048321 519 WGTLLCACKIHLNIEIGEYVAYCLFKL 545 (641)
Q Consensus 519 ~~~ll~~~~~~g~~~~a~~~~~~~~~~ 545 (641)
+..+...+.+.|+.++|..++++.+.+
T Consensus 364 ~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 364 YAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 777777777777777777777777654
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.5e-12 Score=128.80 Aligned_cols=273 Identities=11% Similarity=0.012 Sum_probs=155.8
Q ss_pred CHHHHHHHHhcCCC--CCcc-hHHHHHHHHHhCCChhHHHHHHHHHHHcC-C-CCCHHHHHHHHHHhcCcCchHHHHHHH
Q 048321 294 DIDSARVLFDGICD--RTRV-SWTAMISGYAQKGDLDEALRLFFAMEAAG-E-LPDLVTVLSMISGCGQSGALELGKWFD 368 (641)
Q Consensus 294 ~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~-~p~~~t~~~ll~~~~~~~~~~~a~~~~ 368 (641)
+..+|...|..++. .|+. ....+..+|...+++++|.++|+.+.+.. . .-+..+|.+.+-.+-+. .+...+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 45566666666532 1222 23445566777777777777777666532 1 12334555555443221 111111
Q ss_pred -HHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 048321 369 -NYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEK---IVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRP 444 (641)
Q Consensus 369 -~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 444 (641)
+.+++.. +..+.+|.++.++|.-+++.+.|++.|++..+- ...+|+.+..-+.....+|.|...|+..+.. .|
T Consensus 410 aq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--~~ 486 (638)
T KOG1126|consen 410 AQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV--DP 486 (638)
T ss_pred HHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--Cc
Confidence 2222222 445566666766776666777777777666552 3345566655666666666666666666542 34
Q ss_pred Chh-hHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCC-hhHHHHHHHHhhccCChHHHHHHHHhCC-C-CCChhHHH
Q 048321 445 NRV-TFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPE-LDHYSCMADLLGRKGKLKEALDFVQSMP-I-KSDAGIWG 520 (641)
Q Consensus 445 ~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~ 520 (641)
... .|..+...|.+.++++.|.-.|+.+.+ +.|. .....++...+.+.|+.|+|+++++++. . +.|+..-.
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~-----INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~ 561 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE-----INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKY 561 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhc-----CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHH
Confidence 333 555555566666677777666666664 3343 4445555566666667777777766654 2 22444444
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048321 521 TLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 521 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
.-+..+...+++++|+..++++.++-|+++..+..+|.+|-+.|+.+.|..-+-.+.+
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 4455555566666777777766666676666666777777777766666666555544
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.8e-12 Score=126.95 Aligned_cols=245 Identities=11% Similarity=0.024 Sum_probs=176.7
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcC--CCCchhHHHHHHHHHHhcCCHHHHHHH
Q 048321 325 DLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGG--LKDNVMVCNALIDMYSKCGSIGDAREL 402 (641)
Q Consensus 325 ~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~ 402 (641)
+..+|+.+|.+.... +.-.......+..+|...+++++++.+|+.+.+.. .-.+..+|.+.+--+-+.=.+..--+-
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 457888888884433 33333555667778888888888888888888742 123566777665444332222211122
Q ss_pred HhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCC
Q 048321 403 FYALPEKIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRP-NRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYN 481 (641)
Q Consensus 403 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 481 (641)
+-.+....+.+|-++.++|..+++.+.|++.|++..+. .| ...+|+.+..-+.....+|.|...|..++.
T Consensus 413 Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~------- 483 (638)
T KOG1126|consen 413 LIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALG------- 483 (638)
T ss_pred HHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhc-------
Confidence 22223345678888888888888888999888888874 56 445777777777778888888888887753
Q ss_pred CChhHHHH---HHHHhhccCChHHHHHHHHhCC-CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHH
Q 048321 482 PELDHYSC---MADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEM 556 (641)
Q Consensus 482 p~~~~~~~---l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 556 (641)
.+..+|++ ++-.|.+.++++.|+-.|+++. ..| +.+....+...+.+.|+.++|++++++++.++|.|+-.-+..
T Consensus 484 ~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 484 VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 55556655 4566888888898888888876 444 566667777778888888899999999988888888888888
Q ss_pred HHHHHhcCCchHHHHHHHHHHhC
Q 048321 557 ANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 557 ~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
+.++...++++||...++++++-
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKEL 586 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHh
Confidence 88888889999998888888764
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.1e-10 Score=104.80 Aligned_cols=159 Identities=10% Similarity=-0.015 Sum_probs=85.6
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 048321 312 SWTAMISGYAQKGDLDEALRLFFAMEAAGELPDL-VTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMY 390 (641)
Q Consensus 312 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 390 (641)
|...+.+-|.-.++.++|...|++..+.+ |.. ..|+.+.+-|....+...|.+-++.+++.+ +.|-..|-.|.++|
T Consensus 332 TCCiIaNYYSlr~eHEKAv~YFkRALkLN--p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaY 408 (559)
T KOG1155|consen 332 TCCIIANYYSLRSEHEKAVMYFKRALKLN--PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAY 408 (559)
T ss_pred ceeeehhHHHHHHhHHHHHHHHHHHHhcC--cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHH
Confidence 44444444555555556666665555432 222 234444444555555555555555555544 44555555555566
Q ss_pred HhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHH
Q 048321 391 SKCGSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWA 467 (641)
Q Consensus 391 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 467 (641)
.-.+...-|+-.|++... .|...|.+|..+|.+.++.++|++.|.+....| ..+...+..+...+.+.++.++|.+
T Consensus 409 eim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~ 487 (559)
T KOG1155|consen 409 EIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQ 487 (559)
T ss_pred HHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHH
Confidence 555555555555555433 355556666666655566666666665555544 3344555555555555555555555
Q ss_pred HHHHHHh
Q 048321 468 ISIIQYD 474 (641)
Q Consensus 468 ~~~~~~~ 474 (641)
.|+..++
T Consensus 488 ~yek~v~ 494 (559)
T KOG1155|consen 488 YYEKYVE 494 (559)
T ss_pred HHHHHHH
Confidence 5555443
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.9e-11 Score=121.79 Aligned_cols=126 Identities=10% Similarity=-0.053 Sum_probs=72.4
Q ss_pred ChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhH---HHHHHHHhhccCChHHHHHHHHhCC-CCC-Ch--h
Q 048321 445 NRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDH---YSCMADLLGRKGKLKEALDFVQSMP-IKS-DA--G 517 (641)
Q Consensus 445 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~--~ 517 (641)
+...+..+...+...|+.++|.+.++...+.. |+... ...........++.+.+.+.++... ..| |+ .
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~-----pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ 336 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKL-----GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCC 336 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-----CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHH
Confidence 33344444455555555555555555555322 22111 1111111122345555666665543 333 33 4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH--HhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHH
Q 048321 518 IWGTLLCACKIHLNIEIGEYVAY--CLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMM 576 (641)
Q Consensus 518 ~~~~ll~~~~~~g~~~~a~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m 576 (641)
...++.+.|.+.|++++|.+.++ .+++..|+ +..+..++.++.+.|+.++|.+++++.
T Consensus 337 ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~-~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 337 INRALGQLLMKHGEFIEAADAFKNVAACKEQLD-ANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55677777778888888888888 56667776 344667888888888888888877764
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.9e-10 Score=108.99 Aligned_cols=257 Identities=14% Similarity=0.000 Sum_probs=202.8
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 048321 315 AMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCG 394 (641)
Q Consensus 315 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 394 (641)
....-+...+++.+..++++...+.. ++....+..-|..+...|+-.+-..+-..+++.- |....+|-++.--|.-.|
T Consensus 249 ~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~ 326 (611)
T KOG1173|consen 249 EKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIG 326 (611)
T ss_pred HHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhc
Confidence 33445667889999999999988753 3444444444556666776655555555555543 667889999998899999
Q ss_pred CHHHHHHHHhhCCCCC---hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHH
Q 048321 395 SIGDARELFYALPEKI---VVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISII 471 (641)
Q Consensus 395 ~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 471 (641)
+..+|++.|.+...-| ...|-.....|+-.|..++|+..+..+-+. ++-....+..+..-|.+.++.+.|.++|.+
T Consensus 327 k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~ 405 (611)
T KOG1173|consen 327 KYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQ 405 (611)
T ss_pred CcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHH
Confidence 9999999999877633 368999999999999999999999988774 222333555556678899999999999999
Q ss_pred HHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-----C---CC-ChhHHHHHHHHHHHcCCHHHHHHHHHHh
Q 048321 472 QYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-----I---KS-DAGIWGTLLCACKIHLNIEIGEYVAYCL 542 (641)
Q Consensus 472 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~---~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 542 (641)
+....+ .|+...+-+.-+.-..+.+.+|..+|+... . ++ =..+|+.|..+|++.+.+++|+..++++
T Consensus 406 A~ai~P----~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~a 481 (611)
T KOG1173|consen 406 ALAIAP----SDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKA 481 (611)
T ss_pred HHhcCC----CcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 886433 456667777777778899999999998854 1 11 2346888999999999999999999999
Q ss_pred HccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048321 543 FKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 543 ~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
+.+.|.++.+|..+|-+|.-.|+++.|.+.+.+..-
T Consensus 482 L~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 482 LLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 999999999999999999999999999999987654
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.3e-10 Score=118.03 Aligned_cols=286 Identities=10% Similarity=-0.038 Sum_probs=165.3
Q ss_pred cCCCchHHHHHHHHHHHCCCCCChhh-HHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 048321 221 YGDKFDDSLNFYRHMMYNGFRLDVTT-VVSLLSSFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSAR 299 (641)
Q Consensus 221 ~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 299 (641)
..|+++.|.+.+.+..+. .|+... +.....+....|+.+.+...+....+....+...+.-.....+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 456666666666555443 233222 22223444445555555555555543321111122222344444445555554
Q ss_pred HHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCc
Q 048321 300 VLFDGICDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDN 379 (641)
Q Consensus 300 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 379 (641)
.. ++.+.+.. +-+...+..+...+...|+++.+...+..+.+.+..+.
T Consensus 174 ~~-------------------------------l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~ 221 (409)
T TIGR00540 174 HG-------------------------------VDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDD 221 (409)
T ss_pred HH-------------------------------HHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCH
Confidence 44 44444432 11222333444444444444444444444444432221
Q ss_pred hhH-------HHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhH
Q 048321 380 VMV-------CNALIDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTF 449 (641)
Q Consensus 380 ~~~-------~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 449 (641)
... +..++..-......+...+.++..+. .+...+..++..+...|+.++|.+++++..+. .||....
T Consensus 222 ~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~ 299 (409)
T TIGR00540 222 EEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAI 299 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccc
Confidence 111 11111111222234455555655554 47788888889999999999999999999886 4555421
Q ss_pred ---HHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHh--C-CCCCChhHHHHHH
Q 048321 450 ---LAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQS--M-PIKSDAGIWGTLL 523 (641)
Q Consensus 450 ---~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~--~-~~~p~~~~~~~ll 523 (641)
..........++.+.+.+.++...+..+ -.|+.....++...+.+.|++++|.+.|+. . ...|+...+..+.
T Consensus 300 ~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p--~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La 377 (409)
T TIGR00540 300 SLPLCLPIPRLKPEDNEKLEKLIEKQAKNVD--DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAA 377 (409)
T ss_pred hhHHHHHhhhcCCCChHHHHHHHHHHHHhCC--CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHH
Confidence 1112233445778888888888886544 333325667889999999999999999994 3 3678888888999
Q ss_pred HHHHHcCCHHHHHHHHHHhHc
Q 048321 524 CACKIHLNIEIGEYVAYCLFK 544 (641)
Q Consensus 524 ~~~~~~g~~~~a~~~~~~~~~ 544 (641)
..+.+.|+.++|.+++++.+.
T Consensus 378 ~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 378 DAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999998765
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.8e-10 Score=106.94 Aligned_cols=316 Identities=11% Similarity=0.019 Sum_probs=219.2
Q ss_pred HHhcCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcc-hHHHHHHHHHhCCChhHHH
Q 048321 252 SSFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGICDRTRV-SWTAMISGYAQKGDLDEAL 330 (641)
Q Consensus 252 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~ 330 (641)
-.+...|....|...+...+..- +-....|..|... ..+.+.+..+-...+..+.. .--.+..++-...+.++++
T Consensus 172 vv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~l---it~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e~~ 247 (559)
T KOG1155|consen 172 VVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSEL---ITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQHEEAL 247 (559)
T ss_pred HHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHh---hchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566666666665554321 2233333333322 23444444333333222111 1112344555566777787
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCC--CCchhHHHHHHHHHHhcCCHHH-HHHHHhhCC
Q 048321 331 RLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGL--KDNVMVCNALIDMYSKCGSIGD-ARELFYALP 407 (641)
Q Consensus 331 ~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~~ 407 (641)
.-.......|..-+...-+....+.-...++++|+.+|+++.+... -.|..+|..++-.-..+.++.- |..++ .+.
T Consensus 248 ~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~-~id 326 (559)
T KOG1155|consen 248 QKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVS-NID 326 (559)
T ss_pred HHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHH-Hhc
Confidence 7777777777655554444444455667788999999999888631 1255666665533322222221 22222 233
Q ss_pred CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh-hHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhH
Q 048321 408 EKIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRV-TFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDH 486 (641)
Q Consensus 408 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~ 486 (641)
+--+.|..++.+-|.-.++.++|...|++..+. .|... .|+.+..-|....+...|.+-+..+++..+ -|-..
T Consensus 327 KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p----~DyRA 400 (559)
T KOG1155|consen 327 KYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINP----RDYRA 400 (559)
T ss_pred cCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCc----hhHHH
Confidence 333456666777888889999999999999986 56655 566666689999999999999999996433 56889
Q ss_pred HHHHHHHhhccCChHHHHHHHHhCC-CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcC
Q 048321 487 YSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGG 564 (641)
Q Consensus 487 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 564 (641)
|-.|+.+|.-.+...-|+-+|++.. .+| |+..|.+|...|.+.++.++|++.+++++.....+..+|..|+++|-+.+
T Consensus 401 WYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~ 480 (559)
T KOG1155|consen 401 WYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELK 480 (559)
T ss_pred HhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence 9999999999999999999999987 555 78899999999999999999999999999998878899999999999999
Q ss_pred CchHHHHHHHHHHh
Q 048321 565 RWDGVANIRTMMKR 578 (641)
Q Consensus 565 ~~~eA~~~~~~m~~ 578 (641)
+.++|...+++-.+
T Consensus 481 d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 481 DLNEAAQYYEKYVE 494 (559)
T ss_pred hHHHHHHHHHHHHH
Confidence 99999999887655
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.3e-11 Score=123.61 Aligned_cols=437 Identities=11% Similarity=0.032 Sum_probs=234.2
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHHcCCCChhHHHHHHHHhHcCCChhHHHHHHhcccCCC
Q 048321 127 RLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISSYAKCDDLKMAELVFCGIEERL 206 (641)
Q Consensus 127 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 206 (641)
.++-.|...|+.|+.+||..++.-|+..|+++.|- +|..|.-...+....+++.++......++.+.+. +
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------e-- 80 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------E-- 80 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------C--
Confidence 45566677777777777777777777777777777 7777776666667777777777777777766665 3
Q ss_pred CCchhHHHHHHHHhcCCCchHHHHHHHH-HH-------HCCCCCChhhHHHHHHHhcCCC-c------hHHHHHHHHHHH
Q 048321 207 RTVVSWNSMVAGCTYGDKFDDSLNFYRH-MM-------YNGFRLDVTTVVSLLSSFVCPE-A------LVQGRLVHSHGI 271 (641)
Q Consensus 207 ~~~~~~~~li~~~~~~g~~~~A~~~~~~-m~-------~~g~~p~~~t~~~ll~~~~~~~-~------~~~a~~~~~~~~ 271 (641)
|.+.+|..|..+|.+.|+... ++..++ |. ..|+.--...+-..+++|-..- + ..--+.++...+
T Consensus 81 p~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqll 159 (1088)
T KOG4318|consen 81 PLADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLL 159 (1088)
T ss_pred CchhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHH
Confidence 667777777777777777544 222222 11 1232222222222222221110 0 001112222333
Q ss_pred HhCC-CCchhHHHH---HHHHHH-hcCCHHHHHHHHhcCC-CCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH
Q 048321 272 HYGF-DLDVSVINT---LISMYS-KCGDIDSARVLFDGIC-DRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDL 345 (641)
Q Consensus 272 ~~g~-~~~~~~~~~---li~~~~-~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 345 (641)
+.+. .|...-++. .++-.. ....+++-........ .+++.++.+++..-..+|+.+.|..++.+|.+.|+..+.
T Consensus 160 kll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~ 239 (1088)
T KOG4318|consen 160 KLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRA 239 (1088)
T ss_pred HHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccc
Confidence 3221 111110110 111111 1122333333333333 367777888887777788888888888888888877777
Q ss_pred HHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH------------------------H
Q 048321 346 VTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDAR------------------------E 401 (641)
Q Consensus 346 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~------------------------~ 401 (641)
.-|..++-+ .++...+..+..-|...|+.|+..|+...+-.+.++|....+. +
T Consensus 240 HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k 316 (1088)
T KOG4318|consen 240 HYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANK 316 (1088)
T ss_pred ccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHH
Confidence 777666655 6677777777777777888887777776655555543322111 1
Q ss_pred HHhh---------CCC-------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHc--CCCCChh-hHHHHHHHHhccCCh
Q 048321 402 LFYA---------LPE-------KIVVSWTTMIAGCALNGEFVEALDLFHQLMEL--DLRPNRV-TFLAVLQACTHTGFL 462 (641)
Q Consensus 402 ~~~~---------~~~-------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~-t~~~ll~~~~~~g~~ 462 (641)
.++. .++ ....+|... .-...+|+.++..++-..|..- ...|+.+ .|..++.-|.+.-..
T Consensus 317 ~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c-~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~ 395 (1088)
T KOG4318|consen 317 RLRQNLRKSVIGSTKKLFLLGTDILEAIWSMC-EKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIER 395 (1088)
T ss_pred HHHHHHHHHHHHHhhHHHHhccccchHHHHHH-HHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHh
Confidence 1111 000 011233322 2234467777777777777642 2233333 454444433321100
Q ss_pred ---------HHHHHH----------HHHHHhhhC----------------CCCCC-------ChhHHHHHHHHhhccCCh
Q 048321 463 ---------EKGWAI----------SIIQYDDKG----------------ISYNP-------ELDHYSCMADLLGRKGKL 500 (641)
Q Consensus 463 ---------~~a~~~----------~~~~~~~~~----------------~~~~p-------~~~~~~~l~~~~~~~g~~ 500 (641)
.++.+. -+.+....+ +.+.| -...-+.++..+.+.-+.
T Consensus 396 ~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~ 475 (1088)
T KOG4318|consen 396 HICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNK 475 (1088)
T ss_pred hHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 011110 000000000 00001 011123344444454455
Q ss_pred HHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCC---CCccHHHHHHHHHhcCCchHHHHHHHHHH
Q 048321 501 KEALDFVQSMPIKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPH---SAAPYVEMANKYALGGRWDGVANIRTMMK 577 (641)
Q Consensus 501 ~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~eA~~~~~~m~ 577 (641)
.+++...+.....--+..|..|+.-|..+...+.|.....+....+.. +..-+..+.+++.+.+...++.++.+++.
T Consensus 476 lK~l~~~ekye~~lf~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~k 555 (1088)
T KOG4318|consen 476 LKILCDEEKYEDLLFAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDK 555 (1088)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhh
Confidence 555543333221111256788888888999999888888776554322 34557889999999999999999999987
Q ss_pred h
Q 048321 578 R 578 (641)
Q Consensus 578 ~ 578 (641)
+
T Consensus 556 s 556 (1088)
T KOG4318|consen 556 S 556 (1088)
T ss_pred H
Confidence 6
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.7e-13 Score=129.67 Aligned_cols=252 Identities=17% Similarity=0.104 Sum_probs=66.7
Q ss_pred HHHHhcCCCchHHHHHHHHHHHCCCCCChhhHHHH-HHHhcCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 048321 216 VAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVVSL-LSSFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGD 294 (641)
Q Consensus 216 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 294 (641)
...+.+.|++++|++++++.......|+...|..+ ...+-..++++.|...++.+...+ +.++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccccc
Confidence 34444455555555555433222212333333222 222333444555555555554443 2234444455554 45566
Q ss_pred HHHHHHHHhcC--CCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcC-CCCCHHHHHHHHHHhcCcCchHHHHHHHHHH
Q 048321 295 IDSARVLFDGI--CDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAG-ELPDLVTVLSMISGCGQSGALELGKWFDNYA 371 (641)
Q Consensus 295 ~~~A~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 371 (641)
+++|.++++.. ..++...+..++..+.+.++++++..+++...... ..++...|..+...+.+.|+.++|...++..
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666655544 22344455556666666666666666666655422 2233444444445555555666666666555
Q ss_pred HHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-Chh
Q 048321 372 CSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRP-NRV 447 (641)
Q Consensus 372 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~ 447 (641)
++.. +.+..+.+.++..+...|+.+++.++++...+ .|...|..+..++...|+.++|+..|++.... .| |..
T Consensus 173 l~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~--~p~d~~ 249 (280)
T PF13429_consen 173 LELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKL--NPDDPL 249 (280)
T ss_dssp HHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH--STT-HH
T ss_pred HHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccc--cccccc
Confidence 5543 33444555555555555555554444433322 33444555555555555555555555555543 23 333
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHH
Q 048321 448 TFLAVLQACTHTGFLEKGWAISIIQ 472 (641)
Q Consensus 448 t~~~ll~~~~~~g~~~~a~~~~~~~ 472 (641)
+...+..++...|+.++|.++..++
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHHT---------------
T ss_pred ccccccccccccccccccccccccc
Confidence 4444555555555555555554443
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.7e-11 Score=113.74 Aligned_cols=198 Identities=12% Similarity=0.000 Sum_probs=166.1
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 048321 378 DNVMVCNALIDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQ 454 (641)
Q Consensus 378 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 454 (641)
.....+..+...|...|++++|...|++..+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 3456777888999999999999999987654 346788888999999999999999999999863 334457777788
Q ss_pred HHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCC-ChhHHHHHHHHHHHcCCH
Q 048321 455 ACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHLNI 532 (641)
Q Consensus 455 ~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~ 532 (641)
.+...|++++|.+.++.+..... .......+..+...+...|++++|...+++.. ..| +...+..+...+...|++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPL--YPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccc--cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCH
Confidence 89999999999999999985332 23345677888899999999999999999876 334 466788888999999999
Q ss_pred HHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048321 533 EIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 533 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
++|...++++++..|.++..+..++.++...|++++|..+.+.+..
T Consensus 186 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 186 KDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999999999888888888999999999999999999887764
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.42 E-value=9.4e-08 Score=94.64 Aligned_cols=509 Identities=11% Similarity=0.081 Sum_probs=282.8
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHhHhC-CCCCCcccHHHHHHHHhccCCchHHhHHHHHHhhccCcCCCChhHHHHHhh
Q 048321 21 QWNSQIREAVNKNEAHKTLLLFRQMKQN-DIEPNNLTFPFIAKACAKLSDLIYSQMIHGHIVKSPFVKCDRLDCAYKIFD 99 (641)
Q Consensus 21 ~~~~li~~~~~~~~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~A~~~f~ 99 (641)
.|-.-+..+.++|+.-.....|+..++. .+.-....|...+...... +-++-+.++++
T Consensus 104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~---------------------~lPets~rvyr 162 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESH---------------------GLPETSIRVYR 162 (835)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhC---------------------CChHHHHHHHH
Confidence 5777777777777777777777776542 3333444566666555443 34455555555
Q ss_pred ccCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcC------CCCChhhHHHHHHHHhccCChhHHHHHHHHHHHHcC-
Q 048321 100 EMAVRDVASWNAMLVGFAQMGFLENVLRLFYNMRLVG------IQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGV- 172 (641)
Q Consensus 100 ~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~- 172 (641)
+-.+-++..-+--|..++..+++++|-+.+....... .+.+...|..+....++..+.-...++ +.+++.|+
T Consensus 163 RYLk~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnv-daiiR~gi~ 241 (835)
T KOG2047|consen 163 RYLKVAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNV-DAIIRGGIR 241 (835)
T ss_pred HHHhcCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCH-HHHHHhhcc
Confidence 5444444556666777777777777777776654321 133334455555555444332222221 22233332
Q ss_pred -CCC--hhHHHHHHHHhHcCCChhHHHHHHhcccCCCCCchhHHHHHHHHhcC----------------CC------chH
Q 048321 173 -DAD--VSVCNTWISSYAKCDDLKMAELVFCGIEERLRTVVSWNSMVAGCTYG----------------DK------FDD 227 (641)
Q Consensus 173 -~~~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~----------------g~------~~~ 227 (641)
-+| ...|++|.+-|.+.|.++.|..+|++......++.-++.+-.+|++- |+ ++-
T Consensus 242 rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~ 321 (835)
T KOG2047|consen 242 RFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLEL 321 (835)
T ss_pred cCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHH
Confidence 223 35678888888888888888888877655322333333333333221 11 122
Q ss_pred HHHHHHHHHHCCC-----------CCChhhHHHHHHHhcCCCchHHHHHHHHHHHHhCCC-----CchhHHHHHHHHHHh
Q 048321 228 SLNFYRHMMYNGF-----------RLDVTTVVSLLSSFVCPEALVQGRLVHSHGIHYGFD-----LDVSVINTLISMYSK 291 (641)
Q Consensus 228 A~~~~~~m~~~g~-----------~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-----~~~~~~~~li~~~~~ 291 (641)
.+.-|+.+...+. +-+..++..-.. ...|+..+-...+.++++.--+ .-...|..+.+.|-.
T Consensus 322 ~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~ 399 (835)
T KOG2047|consen 322 HMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYEN 399 (835)
T ss_pred HHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHh
Confidence 2333444433221 011122222211 2346677777778877764211 123578889999999
Q ss_pred cCCHHHHHHHHhcCCCCCcc-------hHHHHHHHHHhCCChhHHHHHHHHHHHcCCC----------C-------CHHH
Q 048321 292 CGDIDSARVLFDGICDRTRV-------SWTAMISGYAQKGDLDEALRLFFAMEAAGEL----------P-------DLVT 347 (641)
Q Consensus 292 ~g~~~~A~~~~~~~~~~~~~-------~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----------p-------~~~t 347 (641)
.|+++.|+.+|++..+-+-. +|..-...-.+..+++.|+++++.....--. | +...
T Consensus 400 ~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlki 479 (835)
T KOG2047|consen 400 NGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKI 479 (835)
T ss_pred cCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHH
Confidence 99999999999988543322 4555555566778888999888776532111 1 1122
Q ss_pred HHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCh-hHHHHHHHHHH
Q 048321 348 VLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE----KIV-VSWTTMIAGCA 422 (641)
Q Consensus 348 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~-~~~~~li~~~~ 422 (641)
|+..+..--..|-++..+.+++.+++..+... .+.-.....+-...-++++.+++++-.. |++ ..|+.-+.-+.
T Consensus 480 Ws~y~DleEs~gtfestk~vYdriidLriaTP-qii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi 558 (835)
T KOG2047|consen 480 WSMYADLEESLGTFESTKAVYDRIIDLRIATP-QIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFI 558 (835)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHH
Confidence 44444444556778888889999988665332 2222233334456668899999987654 554 47777766655
Q ss_pred Hc---CChHHHHHHHHHHHHcCCCCChhhHHHHHH--HHhccCChHHHHHHHHHHHhhhCCCCCCC--hhHHHHHHHH--
Q 048321 423 LN---GEFVEALDLFHQLMELDLRPNRVTFLAVLQ--ACTHTGFLEKGWAISIIQYDDKGISYNPE--LDHYSCMADL-- 493 (641)
Q Consensus 423 ~~---g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~--~~~~~g~~~~a~~~~~~~~~~~~~~~~p~--~~~~~~l~~~-- 493 (641)
+. -..+.|..+|++.++ |.+|...-+..|+- -=...|....|..+++++... +++. ...|+..|.-
T Consensus 559 ~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~----v~~a~~l~myni~I~kaa 633 (835)
T KOG2047|consen 559 KRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA----VKEAQRLDMYNIYIKKAA 633 (835)
T ss_pred HHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHH
Confidence 42 367899999999998 66776653333332 223457778888888876532 2222 3445555422
Q ss_pred --hh---ccCChHHHHHHHHhCCCCCChhH---HHHHHHHHHHcCCHHHHHHHHHHhHcc-CCC-CCccHHHHHHHHHhc
Q 048321 494 --LG---RKGKLKEALDFVQSMPIKSDAGI---WGTLLCACKIHLNIEIGEYVAYCLFKL-EPH-SAAPYVEMANKYALG 563 (641)
Q Consensus 494 --~~---~~g~~~~A~~~~~~~~~~p~~~~---~~~ll~~~~~~g~~~~a~~~~~~~~~~-~p~-~~~~~~~l~~~~~~~ 563 (641)
|+ ..+-+++|++.+ ||..+ .......-.+.|..+.|..++...-++ +|. ++..|...-+-=.+.
T Consensus 634 e~yGv~~TR~iYekaIe~L------p~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrH 707 (835)
T KOG2047|consen 634 EIYGVPRTREIYEKAIESL------PDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRH 707 (835)
T ss_pred HHhCCcccHHHHHHHHHhC------ChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhc
Confidence 11 111233333332 22211 112223334556666666666555544 332 344555555555555
Q ss_pred CC
Q 048321 564 GR 565 (641)
Q Consensus 564 g~ 565 (641)
|+
T Consensus 708 Gn 709 (835)
T KOG2047|consen 708 GN 709 (835)
T ss_pred CC
Confidence 55
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.8e-09 Score=98.14 Aligned_cols=301 Identities=11% Similarity=-0.012 Sum_probs=212.1
Q ss_pred CChhhHHHHHHHhc--CCCchHHHHHHHHHHHHh-CCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHH---
Q 048321 242 LDVTTVVSLLSSFV--CPEALVQGRLVHSHGIHY-GFDLDVSVINTLISMYSKCGDIDSARVLFDGICDRTRVSWTA--- 315 (641)
Q Consensus 242 p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--- 315 (641)
|+..+...-+.+++ -.++-..+.+.+-.+... -++.|+.....+.++|...|+.++|...|++...-|+.+...
T Consensus 192 ~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~ 271 (564)
T KOG1174|consen 192 DHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDL 271 (564)
T ss_pred CCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHH
Confidence 33344443444333 234444444444444433 367788899999999999999999999999875444433322
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 048321 316 MISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGS 395 (641)
Q Consensus 316 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 395 (641)
..-.+.+.|+.+....+...+.... +-....|..-....-..++++.|..+-+..++.. +.+...+-.-...+...|+
T Consensus 272 Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R 349 (564)
T KOG1174|consen 272 YAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALER 349 (564)
T ss_pred HHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccc
Confidence 2334567888888888887776532 1222223223333445678888888888887755 3344455555667778899
Q ss_pred HHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHH-HHHh-ccCChHHHHHHHH
Q 048321 396 IGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVL-QACT-HTGFLEKGWAISI 470 (641)
Q Consensus 396 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~~~~-~~g~~~~a~~~~~ 470 (641)
.++|.-.|+.... -+..+|.-|+..|...|++.+|..+-+..... +..+..+...+. ..|. ....-++|..+++
T Consensus 350 ~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~e 428 (564)
T KOG1174|consen 350 HTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAE 428 (564)
T ss_pred hHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHH
Confidence 9999999987654 37789999999999999999999888777664 233444554442 2332 2334578888888
Q ss_pred HHHhhhCCCCCCC-hhHHHHHHHHhhccCChHHHHHHHHhCC-CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCC
Q 048321 471 IQYDDKGISYNPE-LDHYSCMADLLGRKGKLKEALDFVQSMP-IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPH 548 (641)
Q Consensus 471 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 548 (641)
...+ +.|+ ....+.+..++.+.|+.++++.++++.. ..||....+.|...+...+.+++|...|..++.++|+
T Consensus 429 k~L~-----~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 429 KSLK-----INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred hhhc-----cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 7774 5566 5667788899999999999999999866 7889999999999999999999999999999999998
Q ss_pred CC
Q 048321 549 SA 550 (641)
Q Consensus 549 ~~ 550 (641)
+-
T Consensus 504 ~~ 505 (564)
T KOG1174|consen 504 SK 505 (564)
T ss_pred ch
Confidence 63
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.2e-08 Score=103.11 Aligned_cols=399 Identities=12% Similarity=0.022 Sum_probs=218.6
Q ss_pred CCChhHHHHHHHHhHcCCChhHHHHHHhcccCC-CCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCCCCChhhHHHHH
Q 048321 173 DADVSVCNTWISSYAKCDDLKMAELVFCGIEER-LRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVVSLL 251 (641)
Q Consensus 173 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 251 (641)
.-|..+|..|.-+..++|+++.+.+.|++.... ......|+.+-..|...|.-..|+.+++.-....-.|+..+-..+.
T Consensus 320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 345566666666666667777666666665443 3345556666666666666666666666554433223333322222
Q ss_pred -HHhc-CCCchHHHHHHHHHHHHh--CC--CCchhHHHHHHHHHHhcC-----------CHHHHHHHHhcCCC---CCcc
Q 048321 252 -SSFV-CPEALVQGRLVHSHGIHY--GF--DLDVSVINTLISMYSKCG-----------DIDSARVLFDGICD---RTRV 311 (641)
Q Consensus 252 -~~~~-~~~~~~~a~~~~~~~~~~--g~--~~~~~~~~~li~~~~~~g-----------~~~~A~~~~~~~~~---~~~~ 311 (641)
..|. +.+..+++..+-..+++. +. ...+..|-.+.-+|...- ...++.+.+++..+ .|..
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~ 479 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPL 479 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCch
Confidence 2222 345555555555555541 11 112233333433333211 11233344444311 1222
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 048321 312 SWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYS 391 (641)
Q Consensus 312 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 391 (641)
..--+.--|+..++.+.|++..++..+.+-.-+...|..+.-.+...+++..|+.+.+.....- ..|......-+..-.
T Consensus 480 ~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~i~~ 558 (799)
T KOG4162|consen 480 VIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIHIEL 558 (799)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhhhhh
Confidence 2112222344555666666666666665445555555555555556666666666665554311 000000000011111
Q ss_pred hcCCHHHHHHHHh--------------------------hCCC-----CC-hhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 048321 392 KCGSIGDARELFY--------------------------ALPE-----KI-VVSWTTMIAGCALNGEFVEALDLFHQLME 439 (641)
Q Consensus 392 ~~g~~~~A~~~~~--------------------------~~~~-----~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 439 (641)
.-++.++|..... .+.- .+ +.++..+..-....+ ..+..-.. +..
T Consensus 559 ~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~--~~~~se~~-Lp~ 635 (799)
T KOG4162|consen 559 TFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQL--KSAGSELK-LPS 635 (799)
T ss_pred hcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhh--hhcccccc-cCc
Confidence 1233333322221 1110 01 122222222111111 11100000 222
Q ss_pred cCCCCChh--------hHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC
Q 048321 440 LDLRPNRV--------TFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP 511 (641)
Q Consensus 440 ~g~~p~~~--------t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 511 (641)
..+.|+.. .+......+...+..++|+..+.+..... .-....|.-.+..+...|.++||.+.|....
T Consensus 636 s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~----~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al 711 (799)
T KOG4162|consen 636 STVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID----PLSASVYYLRGLLLEVKGQLEEAKEAFLVAL 711 (799)
T ss_pred ccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc----hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH
Confidence 22223322 23344557788888899987777776432 2446667777788999999999999998876
Q ss_pred -CCCC-hhHHHHHHHHHHHcCCHHHHHH--HHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 512 -IKSD-AGIWGTLLCACKIHLNIEIGEY--VAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 512 -~~p~-~~~~~~ll~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
..|+ +.+..++...+...|+...|.. ++..+++++|.++++|..+|.++.+.|+.++|.+-|....+-
T Consensus 712 ~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 712 ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 6665 5588999999999999888888 999999999999999999999999999999999999887553
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.2e-09 Score=104.59 Aligned_cols=282 Identities=8% Similarity=-0.013 Sum_probs=208.5
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC---CcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 048321 275 FDLDVSVINTLISMYSKCGDIDSARVLFDGICDR---TRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSM 351 (641)
Q Consensus 275 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~l 351 (641)
+..++.+.....+-+...+++.+..++++.+.+. +...+..-|.++...|+..+-..+=.+|.+. .+-.+.+|.++
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aV 318 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAV 318 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhH
Confidence 3556667777777788889999999998887444 4445666677888888888888888888775 23345788888
Q ss_pred HHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHHcCChH
Q 048321 352 ISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE--K-IVVSWTTMIAGCALNGEFV 428 (641)
Q Consensus 352 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~ 428 (641)
.--|...|+.++|++++....... +.-...|-.+...|+-.|.-++|...+....+ + ....+--+..-|.+.++.+
T Consensus 319 g~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHH
Confidence 777778899999999998876543 22345788888889888988888877765443 1 1112222334577788999
Q ss_pred HHHHHHHHHHHcCCCCCh-hhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCC----ChhHHHHHHHHhhccCChHHH
Q 048321 429 EALDLFHQLMELDLRPNR-VTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNP----ELDHYSCMADLLGRKGKLKEA 503 (641)
Q Consensus 429 ~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A 503 (641)
.|.+.|.+.... .|+. ...+-+.-...+.+.+.+|..+|+..+..-. .+.+ -..+++.|+.+|.+.+++++|
T Consensus 398 LAe~Ff~~A~ai--~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik-~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA 474 (611)
T KOG1173|consen 398 LAEKFFKQALAI--APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIK-SVLNEKIFWEPTLNNLGHAYRKLNKYEEA 474 (611)
T ss_pred HHHHHHHHHHhc--CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhh-hccccccchhHHHHhHHHHHHHHhhHHHH
Confidence 999999988864 5654 4566555555667889999999988773211 0111 234578888999999999999
Q ss_pred HHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHH
Q 048321 504 LDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYA 561 (641)
Q Consensus 504 ~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 561 (641)
+..++... .+.|..++.++.-.+...|+++.|...+.+++.+.|+|..+-.+|..+..
T Consensus 475 I~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 475 IDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 99999976 45578899999999999999999999999999999998666666665443
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.35 E-value=4e-09 Score=98.73 Aligned_cols=301 Identities=14% Similarity=0.035 Sum_probs=205.1
Q ss_pred HHHHHHHh--cCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHHcCCCChhHHHHHHHHhHc
Q 048321 111 AMLVGFAQ--MGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISSYAK 188 (641)
Q Consensus 111 ~li~~~~~--~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 188 (641)
.+..+..+ .|+|.+|.++..+-.+.+-.| ...|..-..+.-..|+.+.+-+++.++.+..-.++..+.-+.......
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~ 165 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLN 165 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHh
Confidence 34444433 688999998888877665332 334666667777888888888888888876555666777777788888
Q ss_pred CCChhHHHHHHhcccCC-CCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCchHHHHHHH
Q 048321 189 CDDLKMAELVFCGIEER-LRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVVSLLSSFVCPEALVQGRLVH 267 (641)
Q Consensus 189 ~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 267 (641)
.|+.+.|..-.+++.+. +.++........+|.+.|++.+...++.+|.+.|.--|+.. .++
T Consensus 166 ~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~-----------------~~l- 227 (400)
T COG3071 166 RRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEA-----------------ARL- 227 (400)
T ss_pred CCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHH-----------------HHH-
Confidence 88888888888777766 56778888888888889999888888888888776333221 100
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC
Q 048321 268 SHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGIC---DRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPD 344 (641)
Q Consensus 268 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 344 (641)
...+|+.+++=....+..+.-...++..+ +.++..-.+++.-+.+.|+.++|.++..+..+.+..|+
T Consensus 228 ----------e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~ 297 (400)
T COG3071 228 ----------EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR 297 (400)
T ss_pred ----------HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh
Confidence 11334445554444455555555666663 23455666777888888999999998888888777666
Q ss_pred HHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhHHHHHHHHHH
Q 048321 345 LVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE--KIVVSWTTMIAGCA 422 (641)
Q Consensus 345 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~ 422 (641)
.. .+-.+.+.++.+.-.+..+.-.+.. +.++..+.+|...|.+.+.+.+|...|+...+ ++..+|+.+..++.
T Consensus 298 L~----~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~ 372 (400)
T COG3071 298 LC----RLIPRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALD 372 (400)
T ss_pred HH----HHHhhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHH
Confidence 22 2234566666666555555554432 34446777777777888888888777776554 67777777777777
Q ss_pred HcCChHHHHHHHHHHHHcCCCCC
Q 048321 423 LNGEFVEALDLFHQLMELDLRPN 445 (641)
Q Consensus 423 ~~g~~~~A~~~~~~m~~~g~~p~ 445 (641)
+.|+..+|.+.+++....-.+|+
T Consensus 373 ~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 373 QLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred HcCChHHHHHHHHHHHHHhcCCC
Confidence 77777777777776664333333
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.4e-09 Score=100.54 Aligned_cols=410 Identities=11% Similarity=-0.057 Sum_probs=262.0
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-hhhHHHHHHHHhccCChhHHHHHHHHHHHHcCCCC-hhHHHHHHHH
Q 048321 108 SWNAMLVGFAQMGFLENVLRLFYNMRLVGIQAD-FVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDAD-VSVCNTWISS 185 (641)
Q Consensus 108 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~ 185 (641)
.+-..-.-|.++|.+++|++.|.+.++ ..|| +..|.....+|...|+|+.+.+--...++. .|+ +..+..-.++
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A 192 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASA 192 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHH
Confidence 344556678889999999999999988 4788 666777788888999999988877777663 344 2345555577
Q ss_pred hHcCCChhHHHHHHhcccCCCCCchhHHHHHHHHhcCCCchHHHHHHHH--------HHH-CC--CCCChhhHHHHHHHh
Q 048321 186 YAKCDDLKMAELVFCGIEERLRTVVSWNSMVAGCTYGDKFDDSLNFYRH--------MMY-NG--FRLDVTTVVSLLSSF 254 (641)
Q Consensus 186 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~--------m~~-~g--~~p~~~t~~~ll~~~ 254 (641)
+-..|++++|+.= +|-.++..++....-.--+.+++++ -.. .+ +.|+.....+.+..+
T Consensus 193 ~E~lg~~~eal~D-----------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF 261 (606)
T KOG0547|consen 193 HEQLGKFDEALFD-----------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSF 261 (606)
T ss_pred HHhhccHHHHHHh-----------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhc
Confidence 7778888877532 1222333333333222223333322 111 11 334544444444443
Q ss_pred cCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-cCCHHHHHHHHhcC-------CCCC---c------chHHHHH
Q 048321 255 VCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSK-CGDIDSARVLFDGI-------CDRT---R------VSWTAMI 317 (641)
Q Consensus 255 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~-------~~~~---~------~~~~~li 317 (641)
-..-... +...+-..|...-..+=..+.. ...+..|...+.+- ...+ . .+...-.
T Consensus 262 ~~~~~~~--------~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~g 333 (606)
T KOG0547|consen 262 HADPKPL--------FDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRG 333 (606)
T ss_pred ccccccc--------ccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhh
Confidence 2110000 0000000011111111111111 01222232222211 1111 1 1122222
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHH
Q 048321 318 SGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIG 397 (641)
Q Consensus 318 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 397 (641)
.-+.-.|+.-.|..-|+..+.....++.. |..+...|....+.++....|....+.+ +-++.+|.--.+++.-.++++
T Consensus 334 tF~fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e 411 (606)
T KOG0547|consen 334 TFHFLKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYE 411 (606)
T ss_pred hhhhhcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHH
Confidence 23455788999999999998875544443 6667778999999999999999999876 557778888888888899999
Q ss_pred HHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHhccCChHHHHHHHHHHH
Q 048321 398 DARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNR-VTFLAVLQACTHTGFLEKGWAISIIQY 473 (641)
Q Consensus 398 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~ 473 (641)
+|..-|++... .++..|-.+..+..+.+++++++..|++..++ -|+. ..|+.....+...+++++|.+.|+..+
T Consensus 412 ~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai 489 (606)
T KOG0547|consen 412 EAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI 489 (606)
T ss_pred HHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence 99999999876 35677777878888899999999999999987 5655 488888999999999999999999998
Q ss_pred hhhCC----CCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhHcc
Q 048321 474 DDKGI----SYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHLNIEIGEYVAYCLFKL 545 (641)
Q Consensus 474 ~~~~~----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 545 (641)
+-.+. .+.+.+..--+++-+- -.+++..|++++++.. ..| ....+-+|...-.+.|+.++|+++|++...+
T Consensus 490 ~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 490 ELEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred hhccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 63221 0011111222222222 3489999999999976 555 4558889999999999999999999998765
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.6e-08 Score=90.53 Aligned_cols=452 Identities=12% Similarity=0.083 Sum_probs=254.6
Q ss_pred CCChhHHHHHhhccCC------CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHH
Q 048321 88 CDRLDCAYKIFDEMAV------RDVASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLK 161 (641)
Q Consensus 88 ~~~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 161 (641)
.+++..|+.+++--.. .++..| +..++.+.|++++|+..|.-+.+.. .|+...+..+..+..-.|.+.+|+
T Consensus 35 ~rDytGAislLefk~~~~~EEE~~~~lW--ia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~ 111 (557)
T KOG3785|consen 35 NRDYTGAISLLEFKLNLDREEEDSLQLW--IAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAK 111 (557)
T ss_pred cccchhHHHHHHHhhccchhhhHHHHHH--HHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHH
Confidence 4566666666654321 122222 2334566777777777777766643 455555555555555566667766
Q ss_pred HHHHHHHHHcCCCChhHHHH-HHHHhHcCCChhHHHHHHhcccCCCCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCC
Q 048321 162 SVHSFGIHIGVDADVSVCNT-WISSYAKCDDLKMAELVFCGIEERLRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGF 240 (641)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~-ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 240 (641)
++-... |+....+. |.+...+.++-++-..+-+.+.. ...---+|.....-.-.+.+|+++|......+
T Consensus 112 ~~~~ka------~k~pL~~RLlfhlahklndEk~~~~fh~~LqD---~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn- 181 (557)
T KOG3785|consen 112 SIAEKA------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQD---TLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN- 181 (557)
T ss_pred HHHhhC------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhh---hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 665443 33333333 34555556665555555444433 11222233333333345677888887776543
Q ss_pred CCChhhHHHHHHH-hcCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh--cCCHHHH--HHHHhcCCCCCcchHHH
Q 048321 241 RLDVTTVVSLLSS-FVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSK--CGDIDSA--RVLFDGICDRTRVSWTA 315 (641)
Q Consensus 241 ~p~~~t~~~ll~~-~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~--~g~~~~A--~~~~~~~~~~~~~~~~~ 315 (641)
|+-...+.-+.. |.+..-++.+.+++.--++. ++.++...|.......+ .|+..++ ..+-+.... .| .
T Consensus 182 -~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~----~~-~ 254 (557)
T KOG3785|consen 182 -PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQ----EY-P 254 (557)
T ss_pred -hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc----cc-h
Confidence 454555444433 34555566666666555443 23333444433332222 2332222 112221111 11 1
Q ss_pred HHHHHHhC-----CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHH-
Q 048321 316 MISGYAQK-----GDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDM- 389 (641)
Q Consensus 316 li~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~- 389 (641)
.+.-.++. ..-+.|++++-.+.+. .|.. -..++--+.+.+++.+|..+...+.- ..|...+...++.+
T Consensus 255 f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPEA--RlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aa 328 (557)
T KOG3785|consen 255 FIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPEA--RLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAA 328 (557)
T ss_pred hHHHHHHcCeEEEeCCccHHHhchHHHhh--ChHh--hhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHH
Confidence 12222222 2346677776665542 3332 22345567888999988877665421 12333333333322
Q ss_pred ----HHhcCCHHHHHHHHhhCCCC-----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccC
Q 048321 390 ----YSKCGSIGDARELFYALPEK-----IVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTG 460 (641)
Q Consensus 390 ----~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 460 (641)
......+.-|...|+-.-.. .+.--.+|.+.+.-..++++.+..++....-= .-|...-..+..+.+..|
T Consensus 329 lGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF-~NdD~Fn~N~AQAk~atg 407 (557)
T KOG3785|consen 329 LGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYF-TNDDDFNLNLAQAKLATG 407 (557)
T ss_pred hhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcchhhhHHHHHHHHhc
Confidence 22223456677777765442 23345667777777788999999999888753 333333345678899999
Q ss_pred ChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCCCCCChhHHHHHH-HHHHHcCCHHHHHHHH
Q 048321 461 FLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLL-CACKIHLNIEIGEYVA 539 (641)
Q Consensus 461 ~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll-~~~~~~g~~~~a~~~~ 539 (641)
.+.+|.++|-.+.. .. ++.+......|..+|.++++.+-|++++-++..+.+..+...++ .-|.+.+.+--|-++|
T Consensus 408 ny~eaEelf~~is~-~~--ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAF 484 (557)
T KOG3785|consen 408 NYVEAEELFIRISG-PE--IKNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAF 484 (557)
T ss_pred ChHHHHHHHhhhcC-hh--hhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999987652 22 33333334566799999999999999999887655666555554 5699999999999999
Q ss_pred HHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 540 YCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 540 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
..+-.++|. |+.|. |+--...-+++.+...
T Consensus 485 d~lE~lDP~-pEnWe---------GKRGACaG~f~~l~~~ 514 (557)
T KOG3785|consen 485 DELEILDPT-PENWE---------GKRGACAGLFRQLANH 514 (557)
T ss_pred hHHHccCCC-ccccC---------CccchHHHHHHHHHcC
Confidence 999999996 66554 3333444455555443
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.34 E-value=2e-07 Score=92.40 Aligned_cols=497 Identities=11% Similarity=0.075 Sum_probs=306.3
Q ss_pred ccCCCChhhhHHHHHHHHHhCCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHhHHHHHHhhccC--cCCC
Q 048321 12 RIYRSSTINQWNSQIREAVNKNEAHKTLLLFRQMKQNDIEPNNLTFPFIAKACAKLSDLIYSQMIHGHIVKSPF--VKCD 89 (641)
Q Consensus 12 ~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~i~~~~~~~~~--~~~~ 89 (641)
.+|..-....|...+...-..+-++-++.+|++-++- .| ..-.--+..++.+++++++.+..+.++...- ++.|
T Consensus 131 aLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P--~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~g 206 (835)
T KOG2047|consen 131 ALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--AP--EAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKG 206 (835)
T ss_pred hCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CH--HHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcc
Confidence 3554333336999999999999999999999998873 33 3356667777888888888888877764322 1111
Q ss_pred -----ChhHHHHHhhccC----------------C--CC--cccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhH
Q 048321 90 -----RLDCAYKIFDEMA----------------V--RD--VASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTV 144 (641)
Q Consensus 90 -----~~~~A~~~f~~~~----------------~--~~--~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~ 144 (641)
-+.+-..+..+.+ . +| ...|++|...|.+.|.+++|.++|++.... ..+..-|
T Consensus 207 kSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDF 284 (835)
T KOG2047|consen 207 KSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDF 284 (835)
T ss_pred cchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhH
Confidence 1122222222211 1 11 236888888888888888888888877653 3344456
Q ss_pred HHHHHHHhccCChhHHHHHHHHHH-HHcCCCChhHHHHHHHHhHcCCChhHHHHHHhcccC-------------CCCCch
Q 048321 145 MGLTQAAIHAKHLSLLKSVHSFGI-HIGVDADVSVCNTWISSYAKCDDLKMAELVFCGIEE-------------RLRTVV 210 (641)
Q Consensus 145 ~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-------------~~~~~~ 210 (641)
..+..+|+.-.....+..+- ... +.+-+-+.. +++-...-|+.+.. .+.++.
T Consensus 285 t~ifd~Ya~FEE~~~~~~me-~a~~~~~n~ed~~-------------dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~ 350 (835)
T KOG2047|consen 285 TQIFDAYAQFEESCVAAKME-LADEESGNEEDDV-------------DLELHMARFESLMNRRPLLLNSVLLRQNPHNVE 350 (835)
T ss_pred HHHHHHHHHHHHHHHHHHHh-hhhhcccChhhhh-------------hHHHHHHHHHHHHhccchHHHHHHHhcCCccHH
Confidence 66666665432211111111 000 001111111 11222222332222 134566
Q ss_pred hHHHHHHHHhcCCCchHHHHHHHHHHHCCCCCC------hhhHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCc---hhH
Q 048321 211 SWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLD------VTTVVSLLSSFVCPEALVQGRLVHSHGIHYGFDLD---VSV 281 (641)
Q Consensus 211 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~ 281 (641)
.|..-+. +..|+..+-...|.+..+. +.|- ...|..+.+.|-..|+++.|..+|+...+...+.- ..+
T Consensus 351 eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~v 427 (835)
T KOG2047|consen 351 EWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEV 427 (835)
T ss_pred HHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHH
Confidence 6665554 3456777888888887764 2222 23456777788889999999999999988764433 456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcC---CCC------------------CcchHHHHHHHHHhCCChhHHHHHHHHHHHcC
Q 048321 282 INTLISMYSKCGDIDSARVLFDGI---CDR------------------TRVSWTAMISGYAQKGDLDEALRLFFAMEAAG 340 (641)
Q Consensus 282 ~~~li~~~~~~g~~~~A~~~~~~~---~~~------------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 340 (641)
|..-..+-.+..+++.|+++.+.. +.+ +...|+..++.--..|-++....+|+++....
T Consensus 428 w~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLr 507 (835)
T KOG2047|consen 428 WCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLR 507 (835)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh
Confidence 666667777788889999888765 111 23356666766667788888899999998865
Q ss_pred CCCCHH--HHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCc-hhHHHHHHHHHHh---cCCHHHHHHHHhhCCC--CChh
Q 048321 341 ELPDLV--TVLSMISGCGQSGALELGKWFDNYACSGGLKDN-VMVCNALIDMYSK---CGSIGDARELFYALPE--KIVV 412 (641)
Q Consensus 341 ~~p~~~--t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~---~g~~~~A~~~~~~~~~--~~~~ 412 (641)
+..... -|..++ -...-++++.+++++-+..--.|. ..+|+..+.-+.+ ...++.|+.+|++..+ |...
T Consensus 508 iaTPqii~NyAmfL---Eeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~ 584 (835)
T KOG2047|consen 508 IATPQIIINYAMFL---EEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEH 584 (835)
T ss_pred cCCHHHHHHHHHHH---HhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHH
Confidence 433322 233333 233456777777776554322333 3466666665544 3468999999999876 3111
Q ss_pred ---HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh--hHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhH-
Q 048321 413 ---SWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRV--TFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDH- 486 (641)
Q Consensus 413 ---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~- 486 (641)
.|-.-...--..|-...|+.++++.... +++... .|+..|.--...=-+...+.+|+++++. -|+...
T Consensus 585 aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~-----Lp~~~~r 658 (835)
T KOG2047|consen 585 AKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES-----LPDSKAR 658 (835)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh-----CChHHHH
Confidence 1111122223468889999999997764 555443 7888777444433456677888888863 355433
Q ss_pred --HHHHHHHhhccCChHHHHHHHHhCC--CCC--ChhHHHHHHHHHHHcCCHHHHHHHHH
Q 048321 487 --YSCMADLLGRKGKLKEALDFVQSMP--IKS--DAGIWGTLLCACKIHLNIEIGEYVAY 540 (641)
Q Consensus 487 --~~~l~~~~~~~g~~~~A~~~~~~~~--~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~ 540 (641)
.--..++=.+.|..+.|..++.--. .+| +..-|.+.=..-.+|||-+.-.++++
T Consensus 659 ~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keMLR 718 (835)
T KOG2047|consen 659 EMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEMLR 718 (835)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 3345577789999999999987754 455 56679998888899999666555543
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.9e-12 Score=86.24 Aligned_cols=50 Identities=30% Similarity=0.501 Sum_probs=47.7
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhc
Q 048321 104 RDVASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIH 153 (641)
Q Consensus 104 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 153 (641)
||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.9e-09 Score=95.72 Aligned_cols=265 Identities=14% Similarity=0.118 Sum_probs=155.5
Q ss_pred CCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCchHHHHHHHHHHHHhC-CCCc--hhHHHHHHHHHHhcCCHHHH
Q 048321 222 GDKFDDSLNFYRHMMYNGFRLDVTTVVSLLSSFVCPEALVQGRLVHSHGIHYG-FDLD--VSVINTLISMYSKCGDIDSA 298 (641)
Q Consensus 222 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~--~~~~~~li~~~~~~g~~~~A 298 (641)
+.+.++|.++|-+|.+.. +-+..+-.+|-+.+.+.|..+.|..+|..+.++- ++.+ ....-.|..=|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 456788888888887632 1122333456666777777777777777776542 1111 13344566777888888888
Q ss_pred HHHHhcCCCCCc---chHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH----HHHHHHHHhcCcCchHHHHHHHHHH
Q 048321 299 RVLFDGICDRTR---VSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLV----TVLSMISGCGQSGALELGKWFDNYA 371 (641)
Q Consensus 299 ~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~ 371 (641)
+.+|..+.+.+. .+...|+..|-+..+|++|+++-+++.+.+-.+..+ -|--+........+.+.|..++.+.
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 888887755333 355667778888888888888888777765544432 2333344444555667777777666
Q ss_pred HHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCh----hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh
Q 048321 372 CSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKIV----VSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRV 447 (641)
Q Consensus 372 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 447 (641)
.+.+ +..+.+--.+.+.+...|+++.|.+.++.+.+.|. .+...|..+|.+.|+.++.+..+.++.+. .++..
T Consensus 207 lqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~--~~g~~ 283 (389)
T COG2956 207 LQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET--NTGAD 283 (389)
T ss_pred HhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--cCCcc
Confidence 6654 33444444556666666777777776666665443 24455666666667777766666666664 23332
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhh
Q 048321 448 TFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLG 495 (641)
Q Consensus 448 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 495 (641)
.-..+-..-....-.+.|..+..+-.. -+|+...+..+++.-.
T Consensus 284 ~~l~l~~lie~~~G~~~Aq~~l~~Ql~-----r~Pt~~gf~rl~~~~l 326 (389)
T COG2956 284 AELMLADLIELQEGIDAAQAYLTRQLR-----RKPTMRGFHRLMDYHL 326 (389)
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHh-----hCCcHHHHHHHHHhhh
Confidence 223332222222233444444444332 3466666666665543
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.6e-09 Score=99.92 Aligned_cols=276 Identities=13% Similarity=0.076 Sum_probs=176.9
Q ss_pred cCCHHHHHHHHhcCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHH
Q 048321 292 CGDIDSARVLFDGICD---RTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFD 368 (641)
Q Consensus 292 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 368 (641)
.|++..|+++..+-.+ .....|..-..+--+.|+.+.+-.++.+..+.--.++...+.+........|+.+.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 4666666666654422 2223344444455566777777777766665422333333444444566667777777766
Q ss_pred HHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCh-----------hHHHHHHHHHHHcCChHHHHHHHHHH
Q 048321 369 NYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKIV-----------VSWTTMIAGCALNGEFVEALDLFHQL 437 (641)
Q Consensus 369 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~~~li~~~~~~g~~~~A~~~~~~m 437 (641)
+.+.+.+ +..+.+.....++|.+.|++.....+...+.+... .+|+.++.-....+..+.-...|+..
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 6666665 44566667777777777777777777777765321 35666666555555555544555555
Q ss_pred HHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCC
Q 048321 438 MELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSD 515 (641)
Q Consensus 438 ~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~ 515 (641)
-.+ .+-+...-.+++.-+...|+.++|.++..+..+ .+ ..|+ ...+ -...+-++.+.=++..+... .+.+
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk-~~--~D~~---L~~~-~~~l~~~d~~~l~k~~e~~l~~h~~~ 327 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALK-RQ--WDPR---LCRL-IPRLRPGDPEPLIKAAEKWLKQHPED 327 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHH-hc--cChh---HHHH-HhhcCCCCchHHHHHHHHHHHhCCCC
Confidence 443 344555666677777788888888888777774 33 3444 1111 22234455554444444432 2334
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHH
Q 048321 516 AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMK 577 (641)
Q Consensus 516 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~ 577 (641)
+..+.+|...|.+++.+.+|...++.+++..|+ .+.|..++.+|.+.|+.++|.+++++..
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 578888999999999999999999999999887 7889999999999999999999988765
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.8e-12 Score=85.63 Aligned_cols=50 Identities=22% Similarity=0.470 Sum_probs=48.1
Q ss_pred CChhhhHHHHHHHHHhCCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhc
Q 048321 16 SSTINQWNSQIREAVNKNEAHKTLLLFRQMKQNDIEPNNLTFPFIAKACAK 66 (641)
Q Consensus 16 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 66 (641)
||++ +||++|++|++.|++++|+++|++|.+.|+.||..||+++|++|++
T Consensus 1 P~~~-~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVV-TYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchH-HHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 6888 9999999999999999999999999999999999999999999974
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.30 E-value=5e-10 Score=112.40 Aligned_cols=232 Identities=16% Similarity=0.138 Sum_probs=172.8
Q ss_pred HHHHHHHHHhcCcCchHHHHHHHHHHHHc-----CC-CCchh-HHHHHHHHHHhcCCHHHHHHHHhhCCC-------C--
Q 048321 346 VTVLSMISGCGQSGALELGKWFDNYACSG-----GL-KDNVM-VCNALIDMYSKCGSIGDARELFYALPE-------K-- 409 (641)
Q Consensus 346 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~-------~-- 409 (641)
.|...+...|...|+++.|..+++..++. |. .|.+. ..+.+...|...+++.+|..+|+++.. +
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 46666777888888888888888877763 21 22222 334477788999999999999988754 1
Q ss_pred --ChhHHHHHHHHHHHcCChHHHHHHHHHHHH-----cCCCCCh-h-hHHHHHHHHhccCChHHHHHHHHHHHhhhCCCC
Q 048321 410 --IVVSWTTMIAGCALNGEFVEALDLFHQLME-----LDLRPNR-V-TFLAVLQACTHTGFLEKGWAISIIQYDDKGISY 480 (641)
Q Consensus 410 --~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~-~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 480 (641)
-..+++.|..+|.+.|++++|..++++..+ .|..+.. . -++.+...|...+.+++|..+++...+....-.
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 135788888899999999999888887764 1222222 2 566677789999999999999887765332111
Q ss_pred CCC----hhHHHHHHHHhhccCChHHHHHHHHhCC---------CCCC-hhHHHHHHHHHHHcCCHHHHHHHHHHhHcc-
Q 048321 481 NPE----LDHYSCMADLLGRKGKLKEALDFVQSMP---------IKSD-AGIWGTLLCACKIHLNIEIGEYVAYCLFKL- 545 (641)
Q Consensus 481 ~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~- 545 (641)
.++ ..+++.|..+|...|++++|.++++++. ..+. ...++.|...|...++++.|.++|.+...+
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 122 4678999999999999999999999864 1222 446778889999999999999998877543
Q ss_pred ---CCCC---CccHHHHHHHHHhcCCchHHHHHHHHHH
Q 048321 546 ---EPHS---AAPYVEMANKYALGGRWDGVANIRTMMK 577 (641)
Q Consensus 546 ---~p~~---~~~~~~l~~~~~~~g~~~eA~~~~~~m~ 577 (641)
.|++ ...|..|+.+|.++|++++|.++.+...
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 4544 4578899999999999999999988765
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.1e-09 Score=97.44 Aligned_cols=311 Identities=12% Similarity=0.066 Sum_probs=164.7
Q ss_pred CCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcch-------HHHHHHHHHhCCChhHH
Q 048321 257 PEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGICDRTRVS-------WTAMISGYAQKGDLDEA 329 (641)
Q Consensus 257 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~li~~~~~~g~~~~A 329 (641)
.++.++|...|-+|.+.. +.+..+.-+|.+.|-+.|.+|.|+++-+.+.++...| .-.|..-|...|-++.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 355666777777766532 3334445566677777777777777766653322222 23344556666666666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCC
Q 048321 330 LRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEK 409 (641)
Q Consensus 330 ~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 409 (641)
..+|..+.+.+. --......|+..|-...++++|..+-.++.+.+-.+... -+..
T Consensus 127 E~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~---eIAq--------------------- 181 (389)
T COG2956 127 EDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRV---EIAQ--------------------- 181 (389)
T ss_pred HHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchh---HHHH---------------------
Confidence 666666655321 122334455555555555555555555555443222110 0111
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHH-HHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHH
Q 048321 410 IVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVL-QACTHTGFLEKGWAISIIQYDDKGISYNPELDHYS 488 (641)
Q Consensus 410 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~ 488 (641)
.|--+...+....+.+.|..++.+..+. .|+.+--+.++ ......|+++.|.+.++...+ .+ ..--..+..
T Consensus 182 ---fyCELAq~~~~~~~~d~A~~~l~kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~e-Qn--~~yl~evl~ 253 (389)
T COG2956 182 ---FYCELAQQALASSDVDRARELLKKALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLE-QN--PEYLSEVLE 253 (389)
T ss_pred ---HHHHHHHHHhhhhhHHHHHHHHHHHHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHH-hC--hHHHHHHHH
Confidence 2222333344445566666666666654 44444333333 255556666666666666653 22 112234455
Q ss_pred HHHHHhhccCChHHHHHHHHhCC-CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHh--cCC
Q 048321 489 CMADLLGRKGKLKEALDFVQSMP-IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYAL--GGR 565 (641)
Q Consensus 489 ~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--~g~ 565 (641)
.|..+|...|+.++...++.++. ..++...-..+...-....-.+.|...+.+-+...|+-...|-.+.--+.+ -|+
T Consensus 254 ~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~ 333 (389)
T COG2956 254 MLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGR 333 (389)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccc
Confidence 55666666666666666665543 334443344443333333344455555555555566533333333222332 366
Q ss_pred chHHHHHHHHHHhCCCccCCceeEEEECCEEEEEee
Q 048321 566 WDGVANIRTMMKRNQVKKFPGQSLFHINGKTCTFTA 601 (641)
Q Consensus 566 ~~eA~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~ 601 (641)
+.+-..+++.|....++..|-+.....+=+.|+|.-
T Consensus 334 ~k~sL~~lr~mvge~l~~~~~YRC~~CGF~a~~l~W 369 (389)
T COG2956 334 AKESLDLLRDMVGEQLRRKPRYRCQNCGFTAHTLYW 369 (389)
T ss_pred hhhhHHHHHHHHHHHHhhcCCceecccCCcceeeee
Confidence 888888888888877777777766666666676654
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.1e-10 Score=117.53 Aligned_cols=175 Identities=10% Similarity=-0.030 Sum_probs=94.5
Q ss_pred CHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh-hHHHHHHHHhccCChHHHHHHHH
Q 048321 395 SIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRV-TFLAVLQACTHTGFLEKGWAISI 470 (641)
Q Consensus 395 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~ 470 (641)
++++|...+++..+ .+...|..+...+...|++++|+..|+++.+. .|+.. .+..+...+...|++++|...++
T Consensus 319 ~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~ 396 (553)
T PRK12370 319 AMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTIN 396 (553)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 35556666555543 24455555555566666666666666666654 34433 44555556666666666666666
Q ss_pred HHHhhhCCCCCCCh-hHHHHHHHHhhccCChHHHHHHHHhCC--CCCC-hhHHHHHHHHHHHcCCHHHHHHHHHHhHccC
Q 048321 471 IQYDDKGISYNPEL-DHYSCMADLLGRKGKLKEALDFVQSMP--IKSD-AGIWGTLLCACKIHLNIEIGEYVAYCLFKLE 546 (641)
Q Consensus 471 ~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 546 (641)
.+.+. .|+. ..+..++..+...|++++|+..+++.. .+|+ +..+..+...+...|+.++|...++++....
T Consensus 397 ~Al~l-----~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~ 471 (553)
T PRK12370 397 ECLKL-----DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE 471 (553)
T ss_pred HHHhc-----CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc
Confidence 66642 2331 122223333444566666666666543 2233 2234445555556666666666666665555
Q ss_pred CCCCccHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048321 547 PHSAAPYVEMANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 547 p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
|.+......++..|...| ++|...++.+.+
T Consensus 472 ~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 472 ITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred chhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 555555555566666555 355555555443
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.4e-09 Score=113.00 Aligned_cols=244 Identities=13% Similarity=-0.014 Sum_probs=178.9
Q ss_pred ChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHh---------cCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 048321 325 DLDEALRLFFAMEAAGELPDLV-TVLSMISGC---------GQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCG 394 (641)
Q Consensus 325 ~~~~A~~~~~~m~~~~~~p~~~-t~~~ll~~~---------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 394 (641)
..++|..+|++..+. .|+.. .+..+..++ ...++.++|...++++++.. +.+...+..+...+...|
T Consensus 276 ~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 276 SLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 356888888887764 45433 333332222 13456889999999998876 557788888888999999
Q ss_pred CHHHHHHHHhhCCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh-hHHHHHHHHhccCChHHHHHHHH
Q 048321 395 SIGDARELFYALPE--K-IVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRV-TFLAVLQACTHTGFLEKGWAISI 470 (641)
Q Consensus 395 ~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~ 470 (641)
++++|...|++..+ | +...|..+...+...|++++|+..+++..+. .|+.. .+..++..+...|++++|...++
T Consensus 353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 99999999998765 3 4568888999999999999999999999986 56543 33344445667899999999999
Q ss_pred HHHhhhCCCCCCC-hhHHHHHHHHhhccCChHHHHHHHHhCC-CCCChh-HHHHHHHHHHHcCCHHHHHHHHHHhHccCC
Q 048321 471 IQYDDKGISYNPE-LDHYSCMADLLGRKGKLKEALDFVQSMP-IKSDAG-IWGTLLCACKIHLNIEIGEYVAYCLFKLEP 547 (641)
Q Consensus 471 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 547 (641)
++....+ |+ ...+..+..+|...|++++|...+.++. ..|+.. .++.+...+...| +.|...++++++..-
T Consensus 431 ~~l~~~~----p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~ 504 (553)
T PRK12370 431 ELRSQHL----QDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQ 504 (553)
T ss_pred HHHHhcc----ccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhh
Confidence 9875432 43 5557778899999999999999999866 455443 4555555666666 478887877776543
Q ss_pred CCCccHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048321 548 HSAAPYVEMANKYALGGRWDGVANIRTMMKRNQ 580 (641)
Q Consensus 548 ~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~~ 580 (641)
..+.....+..+|.-.|+-+.+..+ +++.+.+
T Consensus 505 ~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 505 RIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 3333444478888889998888877 6666643
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.6e-07 Score=92.38 Aligned_cols=434 Identities=14% Similarity=0.093 Sum_probs=264.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHHcCCCChhHHHH--HHHHhH--c
Q 048321 113 LVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNT--WISSYA--K 188 (641)
Q Consensus 113 i~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--ll~~~~--~ 188 (641)
+.-+.+.|++++|......+...+ +-|...+..-+-+..+.+.+++|..+.+. .+ -..+++. +=.+|| +
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~---~~~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK---NG---ALLVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cc---hhhhcchhhHHHHHHHHH
Confidence 455677899999999999998754 33445577777788889999998855433 21 1122222 245555 6
Q ss_pred CCChhHHHHHHhcccCCCCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCCCCC-hhhHHHHHHHhcCCCchHHHHHHH
Q 048321 189 CDDLKMAELVFCGIEERLRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLD-VTTVVSLLSSFVCPEALVQGRLVH 267 (641)
Q Consensus 189 ~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~ 267 (641)
.+..++|...++.... .+..+...-...+.+.|++++|+++|+.+.+++..-- ...-..++.+-.. ...
T Consensus 92 lnk~Dealk~~~~~~~--~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~-------l~~- 161 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLDR--LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA-------LQV- 161 (652)
T ss_pred cccHHHHHHHHhcccc--cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh-------hhH-
Confidence 7999999999995555 4555666667788999999999999999988765221 1112222222111 111
Q ss_pred HHHHHhCCCCc--hhHHHHHHHHHHhcCCHHHHHHHHhcC--------CCCCcc----------hHHHHHHHHHhCCChh
Q 048321 268 SHGIHYGFDLD--VSVINTLISMYSKCGDIDSARVLFDGI--------CDRTRV----------SWTAMISGYAQKGDLD 327 (641)
Q Consensus 268 ~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~~~~----------~~~~li~~~~~~g~~~ 327 (641)
..+......|+ -..+-.....+...|++.+|+++++.. ...|.. .--.|.-.+...|+.+
T Consensus 162 ~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ 241 (652)
T KOG2376|consen 162 QLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTA 241 (652)
T ss_pred HHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchH
Confidence 11222222232 122222445677899999999999766 222211 1123445677899999
Q ss_pred HHHHHHHHHHHcCCCCCHHH----HHHHHHHhcCcCchHH--HHHHHHHHH-----------HcCCCCchhHHHHHHHHH
Q 048321 328 EALRLFFAMEAAGELPDLVT----VLSMISGCGQSGALEL--GKWFDNYAC-----------SGGLKDNVMVCNALIDMY 390 (641)
Q Consensus 328 ~A~~~~~~m~~~~~~p~~~t----~~~ll~~~~~~~~~~~--a~~~~~~~~-----------~~~~~~~~~~~~~li~~~ 390 (641)
+|..+|...++.. .+|... -|.++.. ..-.++-. ....++... ...-......-+.++.+|
T Consensus 242 ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~-~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~ 319 (652)
T KOG2376|consen 242 EASSIYVDIIKRN-PADEPSLAVAVNNLVAL-SKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF 319 (652)
T ss_pred HHHHHHHHHHHhc-CCCchHHHHHhcchhhh-ccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998875 345422 2223322 22222111 111111111 000011112223344444
Q ss_pred HhcCCHHHHHHHHhhCCCCC-hhHHHHHHHHHH--HcCChHHHHHHHHHHHHcCCCCCh--hhHHHHHHHHhccCChHHH
Q 048321 391 SKCGSIGDARELFYALPEKI-VVSWTTMIAGCA--LNGEFVEALDLFHQLMELDLRPNR--VTFLAVLQACTHTGFLEKG 465 (641)
Q Consensus 391 ~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~a 465 (641)
. +..+.+.++-...+... ...+.+++.... +...+..|.+++...-+. .|.. +.....+......|+++.|
T Consensus 320 t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A 395 (652)
T KOG2376|consen 320 T--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVA 395 (652)
T ss_pred h--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHH
Confidence 3 45667777777766532 334444444332 223577788888877765 4554 3445555677889999999
Q ss_pred HHHHH--------HHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-----CCCChh----HHHHHHHHHHH
Q 048321 466 WAISI--------IQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-----IKSDAG----IWGTLLCACKI 528 (641)
Q Consensus 466 ~~~~~--------~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p~~~----~~~~ll~~~~~ 528 (641)
.+++. .+. . +.-.+.+..+++.++.+.++.+.|.+++.+.. ..+... +|.-+...-.+
T Consensus 396 ~~il~~~~~~~~ss~~-~----~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr 470 (652)
T KOG2376|consen 396 LEILSLFLESWKSSIL-E----AKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLR 470 (652)
T ss_pred HHHHHHHhhhhhhhhh-h----hccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHh
Confidence 99988 444 2 33455677888899999888777776666543 112222 34444445567
Q ss_pred cCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHH
Q 048321 529 HLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTM 575 (641)
Q Consensus 529 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~ 575 (641)
+|+.++|..+++++++.+|++....+.++-.|++.. .+.|..+-+.
T Consensus 471 ~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d-~eka~~l~k~ 516 (652)
T KOG2376|consen 471 HGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARLD-PEKAESLSKK 516 (652)
T ss_pred cCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcC-HHHHHHHhhc
Confidence 899999999999999999999999999999999864 5556665433
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.7e-09 Score=104.34 Aligned_cols=212 Identities=18% Similarity=0.105 Sum_probs=151.1
Q ss_pred cCchHHHHHHHHHHHHcC-CCCc--hhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHH
Q 048321 358 SGALELGKWFDNYACSGG-LKDN--VMVCNALIDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEAL 431 (641)
Q Consensus 358 ~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 431 (641)
.+..+.+..-+..++... ..|+ ...|..+...|.+.|+.++|...|++..+ .+...|+.+...+...|++++|+
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 345566777777776532 2222 45677788889999999999999988765 35689999999999999999999
Q ss_pred HHHHHHHHcCCCCCh-hhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhC
Q 048321 432 DLFHQLMELDLRPNR-VTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSM 510 (641)
Q Consensus 432 ~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 510 (641)
..|++..+. .|+. .++..+..++...|++++|.+.|+...+. .|+..........+...+++++|...|.+.
T Consensus 119 ~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~-----~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~ 191 (296)
T PRK11189 119 EAFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD-----DPNDPYRALWLYLAESKLDPKQAKENLKQR 191 (296)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 999999985 6764 47777777888999999999999999863 344322222233445678899999999764
Q ss_pred C--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHh-------HccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048321 511 P--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCL-------FKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRNQ 580 (641)
Q Consensus 511 ~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~-------~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~~ 580 (641)
. ..|+ .|.. .......|+...+ ..++.+ .++.|+.+..|..+|.+|...|++++|...+++..+.+
T Consensus 192 ~~~~~~~--~~~~-~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 192 YEKLDKE--QWGW-NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HhhCCcc--ccHH-HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 4 2333 2321 2222334544333 233333 24556677899999999999999999999999888654
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.7e-09 Score=100.09 Aligned_cols=199 Identities=16% Similarity=0.070 Sum_probs=107.4
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 048321 311 VSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMY 390 (641)
Q Consensus 311 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 390 (641)
..+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|+++.|...++...+.. +
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~------------- 96 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-P------------- 96 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-C-------------
Confidence 345556666666666666666666665432 1123333344444444455555554444444432 1
Q ss_pred HhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHhccCChHHHHHHH
Q 048321 391 SKCGSIGDARELFYALPEKIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPN-RVTFLAVLQACTHTGFLEKGWAIS 469 (641)
Q Consensus 391 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~ 469 (641)
.+...+..+...+...|++++|.+.|++.......|. ...+..+...+...|++++|...+
T Consensus 97 ------------------~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (234)
T TIGR02521 97 ------------------NNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYL 158 (234)
T ss_pred ------------------CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 2233444555555556666666666666654321222 224444555566666666666666
Q ss_pred HHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccC
Q 048321 470 IIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLE 546 (641)
Q Consensus 470 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 546 (641)
....+..+ .+...+..+...+...|++++|...+++.. .+.+...+..+...+...|+.+.|....+.+.+..
T Consensus 159 ~~~~~~~~----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 159 TRALQIDP----QRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred HHHHHhCc----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 66664322 234456666666666777777766666643 22344455555566666677777777666655543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.1e-10 Score=100.79 Aligned_cols=228 Identities=11% Similarity=0.042 Sum_probs=142.1
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 048321 314 TAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKC 393 (641)
Q Consensus 314 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 393 (641)
+.|.++|.+.|.+.+|..-|+.-.+. .|-+.||..+-.+|.+......|..++..-++.- +-++....-..+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHH
Confidence 45666777777777777766666554 3444455555555655556666655555554431 33333334444445555
Q ss_pred CCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHH
Q 048321 394 GSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISI 470 (641)
Q Consensus 394 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 470 (641)
++.++|.++++...+ .++.+..++..+|.-.++++.|+..|+++.+.|+ -+...|+.+.-+|.-.+.++-++.-|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 555555555555443 2333444444455555555666666666655553 344455555555555555555555554
Q ss_pred HHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCCCCCC--hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCC
Q 048321 471 IQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMPIKSD--AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPH 548 (641)
Q Consensus 471 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 548 (641)
+..... ..|+ ..+|-.|.......||+..|.+.|+-++.-+|+
T Consensus 383 RAlsta-----------------------------------t~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~ 427 (478)
T KOG1129|consen 383 RALSTA-----------------------------------TQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ 427 (478)
T ss_pred HHHhhc-----------------------------------cCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc
Confidence 444211 1222 346777777777889999999999999999999
Q ss_pred CCccHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048321 549 SAAPYVEMANKYALGGRWDGVANIRTMMKRNQ 580 (641)
Q Consensus 549 ~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~~ 580 (641)
+.++++.|+-+-.+.|+.++|..+++...+..
T Consensus 428 h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 428 HGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred hHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 99999999999999999999999999887654
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.5e-09 Score=93.96 Aligned_cols=163 Identities=12% Similarity=0.065 Sum_probs=137.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh-hHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHH
Q 048321 413 SWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRV-TFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMA 491 (641)
Q Consensus 413 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~ 491 (641)
+...+.-+|.+.|+...|..-+++.++. .|+.. ++..+...|.+.|..+.|.+.|+......+ -+-.+.|...
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p----~~GdVLNNYG 110 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAP----NNGDVLNNYG 110 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC----Cccchhhhhh
Confidence 4556777888999999999999999886 67665 888888889999999999999999886332 3467788888
Q ss_pred HHhhccCChHHHHHHHHhCCCCCC----hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCch
Q 048321 492 DLLGRKGKLKEALDFVQSMPIKSD----AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWD 567 (641)
Q Consensus 492 ~~~~~~g~~~~A~~~~~~~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 567 (641)
-.++..|++++|...|+.....|+ ..+|..+..+..+.|+.+.|+..+++.++++|+++.....+++.....|++.
T Consensus 111 ~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~ 190 (250)
T COG3063 111 AFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYA 190 (250)
T ss_pred HHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccch
Confidence 889999999999999998764443 4578888888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCC
Q 048321 568 GVANIRTMMKRNQV 581 (641)
Q Consensus 568 eA~~~~~~m~~~~~ 581 (641)
+|.-+++....++.
T Consensus 191 ~Ar~~~~~~~~~~~ 204 (250)
T COG3063 191 PARLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHHHhccc
Confidence 99999988877653
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.2e-08 Score=99.61 Aligned_cols=236 Identities=15% Similarity=0.131 Sum_probs=142.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCC----------CCCcc-hHHHHHHHHHhCCChhHHHHHHHHHHHc-----CC-C
Q 048321 280 SVINTLISMYSKCGDIDSARVLFDGIC----------DRTRV-SWTAMISGYAQKGDLDEALRLFFAMEAA-----GE-L 342 (641)
Q Consensus 280 ~~~~~li~~~~~~g~~~~A~~~~~~~~----------~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~-~ 342 (641)
.+...|..+|...|+++.|..+|+... .+.+. ..+.+...|...+++++|..+|+++... |- .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 344445555555566655555554331 11111 2334666778888888888888887542 11 1
Q ss_pred CC-HHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCh-hHHHHH
Q 048321 343 PD-LVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALP---EKIV-VSWTTM 417 (641)
Q Consensus 343 p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~-~~~~~l 417 (641)
|. ..++..|-.+|.+.|++++|...++.+.+ +++... .+.+ ..++.+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~----------------------------I~~~~~~~~~~~v~~~l~~~ 331 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALE----------------------------IYEKLLGASHPEVAAQLSEL 331 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHH----------------------------HHHHhhccChHHHHHHHHHH
Confidence 11 12334444445555555555444443332 111100 0122 234555
Q ss_pred HHHHHHcCChHHHHHHHHHHHHc---CCCCCh----hhHHHHHHHHhccCChHHHHHHHHHHHhhh----CCCCCCChhH
Q 048321 418 IAGCALNGEFVEALDLFHQLMEL---DLRPNR----VTFLAVLQACTHTGFLEKGWAISIIQYDDK----GISYNPELDH 486 (641)
Q Consensus 418 i~~~~~~g~~~~A~~~~~~m~~~---g~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~~~~~p~~~~ 486 (641)
+..++..+++++|..++++..+. -+.++. -+++.+...|.+.|++++|.++|+.++... +....-...+
T Consensus 332 ~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~ 411 (508)
T KOG1840|consen 332 AAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKP 411 (508)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHH
Confidence 66677777888887777765541 122333 277888888888899999888888887543 2111122456
Q ss_pred HHHHHHHhhccCChHHHHHHHHhCC--------CCCCh-hHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 048321 487 YSCMADLLGRKGKLKEALDFVQSMP--------IKSDA-GIWGTLLCACKIHLNIEIGEYVAYCLF 543 (641)
Q Consensus 487 ~~~l~~~~~~~g~~~~A~~~~~~~~--------~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~ 543 (641)
++-|...|.+.+++++|.++|.+.. ..|+. .+|..|...|...|+++.|+++.+++.
T Consensus 412 l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 412 LNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 7788888888888888888887753 33443 478899999999999999999988876
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.8e-07 Score=91.63 Aligned_cols=101 Identities=10% Similarity=0.007 Sum_probs=78.8
Q ss_pred CCChhH--HHHHHHHhhccCChHHHHHHHHhCC-CCCChh-HHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHH
Q 048321 481 NPELDH--YSCMADLLGRKGKLKEALDFVQSMP-IKSDAG-IWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEM 556 (641)
Q Consensus 481 ~p~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 556 (641)
+|+... +-.++..+-+.|+++.|+.+++... ..|..+ .|..-...+.+.|+.+.|...++++.+++-.|...-..-
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKc 445 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKC 445 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHH
Confidence 355444 4567788889999999999999876 556544 455556778899999999999999999987665555567
Q ss_pred HHHHHhcCCchHHHHHHHHHHhCCC
Q 048321 557 ANKYALGGRWDGVANIRTMMKRNQV 581 (641)
Q Consensus 557 ~~~~~~~g~~~eA~~~~~~m~~~~~ 581 (641)
++-..++.+.++|.++.......|.
T Consensus 446 AKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 446 AKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHccccHHHHHHHHHhhhccc
Confidence 7888899999999999888877664
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.14 E-value=9.4e-07 Score=89.85 Aligned_cols=409 Identities=15% Similarity=0.081 Sum_probs=263.0
Q ss_pred HHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHHcCCCChhHHHHHHHHhHcCCChhHHHHHHhcccCCC--C-C
Q 048321 132 MRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISSYAKCDDLKMAELVFCGIEERL--R-T 208 (641)
Q Consensus 132 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~--~-~ 208 (641)
+....+.-|...|..+.-+....|+++.+.+.|++....-+. ....|+.+-..|..+|.-..|..+.+.-.... | +
T Consensus 314 ~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~ 392 (799)
T KOG4162|consen 314 LRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSD 392 (799)
T ss_pred HHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCc
Confidence 333346678888888888889999999999999988765433 56778888889999999999999988765542 3 3
Q ss_pred chhHHHHHHHHhc-CCCchHHHHHHHHHHHC--CCC--CChhhHHHHHHHhcC----C-------CchHHHHHHHHHHHH
Q 048321 209 VVSWNSMVAGCTY-GDKFDDSLNFYRHMMYN--GFR--LDVTTVVSLLSSFVC----P-------EALVQGRLVHSHGIH 272 (641)
Q Consensus 209 ~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~--g~~--p~~~t~~~ll~~~~~----~-------~~~~~a~~~~~~~~~ 272 (641)
+..+-..-..|.+ -+..++++++-.+.... |.. .....|..+.-+|.. . ....++.+.++..++
T Consensus 393 ~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~ 472 (799)
T KOG4162|consen 393 ISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQ 472 (799)
T ss_pred chHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHh
Confidence 3333333344443 47788888887777662 111 122233333323321 1 123466777888877
Q ss_pred hCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC----CCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-HHH
Q 048321 273 YGFDLDVSVINTLISMYSKCGDIDSARVLFDGI----CDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPD-LVT 347 (641)
Q Consensus 273 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t 347 (641)
.+ +.|+.+.-.+.--|+..++++.|.+...+. ...+...|..+.-.+...+++.+|+.+.+..... .|+ ..-
T Consensus 473 ~d-~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E--~~~N~~l 549 (799)
T KOG4162|consen 473 FD-PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE--FGDNHVL 549 (799)
T ss_pred cC-CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH--hhhhhhh
Confidence 76 334444444555677888999998877654 4557789999999999999999999998876653 111 110
Q ss_pred HHHHHHHhcCcCchHHHHHHHHHHH---------------------HcCC-------CCchhHHHHHHHHHH---hcCCH
Q 048321 348 VLSMISGCGQSGALELGKWFDNYAC---------------------SGGL-------KDNVMVCNALIDMYS---KCGSI 396 (641)
Q Consensus 348 ~~~ll~~~~~~~~~~~a~~~~~~~~---------------------~~~~-------~~~~~~~~~li~~~~---~~g~~ 396 (641)
...-+..-...++.+++......+. +.|+ ...+.++..+..... +.-..
T Consensus 550 ~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~s 629 (799)
T KOG4162|consen 550 MDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGS 629 (799)
T ss_pred chhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccc
Confidence 0001111111233333222111111 0111 111222222222111 11111
Q ss_pred HHHHHHHhhCCCCC------hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHhccCChHHHHHHH
Q 048321 397 GDARELFYALPEKI------VVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNR-VTFLAVLQACTHTGFLEKGWAIS 469 (641)
Q Consensus 397 ~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~ 469 (641)
+.....+...+.++ ...|......+.+.+..++|...+.+.... .|-. ..|......+...|..++|.+.|
T Consensus 630 e~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~--~~l~~~~~~~~G~~~~~~~~~~EA~~af 707 (799)
T KOG4162|consen 630 ELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI--DPLSASVYYLRGLLLEVKGQLEEAKEAF 707 (799)
T ss_pred ccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc--chhhHHHHHHhhHHHHHHHhhHHHHHHH
Confidence 22222222222233 246777778888999999999888888764 4443 35555556777889999999999
Q ss_pred HHHHhhhCCCCCCC-hhHHHHHHHHhhccCChHHHHH--HHHhCC-CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhHc
Q 048321 470 IIQYDDKGISYNPE-LDHYSCMADLLGRKGKLKEALD--FVQSMP-IKS-DAGIWGTLLCACKIHLNIEIGEYVAYCLFK 544 (641)
Q Consensus 470 ~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 544 (641)
..... +.|+ +....++..++.+.|+..-|.. ++.++. ..| +...|..|.....+.|+.++|-+.|..+++
T Consensus 708 ~~Al~-----ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 708 LVALA-----LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHHh-----cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 98885 5565 6788999999999998777777 888876 555 677999999999999999999999999999
Q ss_pred cCCCCCc
Q 048321 545 LEPHSAA 551 (641)
Q Consensus 545 ~~p~~~~ 551 (641)
+++.+|.
T Consensus 783 Le~S~PV 789 (799)
T KOG4162|consen 783 LEESNPV 789 (799)
T ss_pred hccCCCc
Confidence 9987663
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=2e-08 Score=96.97 Aligned_cols=233 Identities=11% Similarity=-0.030 Sum_probs=160.7
Q ss_pred CCChhHHHHHHHHHHHcC-CCCC--HHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHH
Q 048321 323 KGDLDEALRLFFAMEAAG-ELPD--LVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDA 399 (641)
Q Consensus 323 ~g~~~~A~~~~~~m~~~~-~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 399 (641)
.+..+.++.-+.+++... ..|+ ...|......+...|+.+.|...+...++.. +.+...|+.+...|...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 345667777777776532 2222 2346666667788888888888888888765 55678899999999999999999
Q ss_pred HHHHhhCCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhh
Q 048321 400 RELFYALPE--K-IVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDK 476 (641)
Q Consensus 400 ~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 476 (641)
...|+...+ | +..+|..+...+...|++++|++.|++..+. .|+..........+...++.++|...|......
T Consensus 118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~- 194 (296)
T PRK11189 118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK- 194 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-
Confidence 999998865 3 4578888888899999999999999999985 566542222222345567899999999776532
Q ss_pred CCCCCCChhHHHHHHHHhhccCCh--HHHHHHHHhC-C----CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCC-
Q 048321 477 GISYNPELDHYSCMADLLGRKGKL--KEALDFVQSM-P----IKS-DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEP- 547 (641)
Q Consensus 477 ~~~~~p~~~~~~~l~~~~~~~g~~--~~A~~~~~~~-~----~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p- 547 (641)
..|+...+ .++..+ .|++ +++++.+.+. . ..| ....|..+...+...|++++|+..++++++.+|
T Consensus 195 ---~~~~~~~~-~~~~~~--lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~ 268 (296)
T PRK11189 195 ---LDKEQWGW-NIVEFY--LGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVY 268 (296)
T ss_pred ---CCccccHH-HHHHHH--ccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence 22433222 333333 4444 3334333321 1 112 345789999999999999999999999999997
Q ss_pred CCCccHHHHHHHHHhcCC
Q 048321 548 HSAAPYVEMANKYALGGR 565 (641)
Q Consensus 548 ~~~~~~~~l~~~~~~~g~ 565 (641)
+..++-..++.+....++
T Consensus 269 ~~~e~~~~~~e~~~~~~~ 286 (296)
T PRK11189 269 NFVEHRYALLELALLGQD 286 (296)
T ss_pred hHHHHHHHHHHHHHHHhh
Confidence 555565556655544443
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.1e-06 Score=89.82 Aligned_cols=432 Identities=13% Similarity=0.087 Sum_probs=220.6
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCChh-hHHHHHHHHhccCChhHHHHHHHHHHHHcCCCChhHHHHHHHHhHcC---
Q 048321 114 VGFAQMGFLENVLRLFYNMRLVGIQADFV-TVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISSYAKC--- 189 (641)
Q Consensus 114 ~~~~~~g~~~~a~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--- 189 (641)
..+...|++++|++.++.-.. ..+|.. ........+.+.|+.++|..++..+++.+. .+..-|..|..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~--~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP-dn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEK--QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP-DNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhh--hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHhhhccc
Confidence 445677888888888876443 234443 455556667777888888888887777652 2333444444444222
Q ss_pred --CChhHHHHHHhcccCCCCCchhHHHHHHHHhcCCCch-HHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCchHHHHHH
Q 048321 190 --DDLKMAELVFCGIEERLRTVVSWNSMVAGCTYGDKFD-DSLNFYRHMMYNGFRLDVTTVVSLLSSFVCPEALVQGRLV 266 (641)
Q Consensus 190 --g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~-~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 266 (641)
.+.+....+++++....|.......+.-.+.....+. .+...+..+...|+++ +|+.|-..|.......-..++
T Consensus 89 ~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred ccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHH
Confidence 2345556666665554333222222222222211222 2333444445555422 223333333322222222222
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcc--hHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC
Q 048321 267 HSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGICDRTRV--SWTAMISGYAQKGDLDEALRLFFAMEAAGELPD 344 (641)
Q Consensus 267 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 344 (641)
+......- ..++.+.... =..-..|... ++.-+...|...|++++|++++++.++. .|+
T Consensus 166 ~~~~~~~l---------------~~~~~~~~~~--~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt 226 (517)
T PF12569_consen 166 VEEYVNSL---------------ESNGSFSNGD--DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPT 226 (517)
T ss_pred HHHHHHhh---------------cccCCCCCcc--ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCC
Confidence 22211110 0000000000 0000112222 3355566777888888888888877765 455
Q ss_pred H-HHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCh----------hH
Q 048321 345 L-VTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKIV----------VS 413 (641)
Q Consensus 345 ~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----------~~ 413 (641)
. ..|..-...+-+.|++.+|....+...... .-|..+-+-.+..+.++|++++|.+++.....++. ..
T Consensus 227 ~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~ 305 (517)
T PF12569_consen 227 LVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCM 305 (517)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHH
Confidence 3 455566666778888888888888887765 44666666677777888888888888877766442 13
Q ss_pred H--HHHHHHHHHcCChHHHHHHHHHHHHc--CCCCCh-------------hhHHHHHHHHhccC-------ChHHHHHHH
Q 048321 414 W--TTMIAGCALNGEFVEALDLFHQLMEL--DLRPNR-------------VTFLAVLQACTHTG-------FLEKGWAIS 469 (641)
Q Consensus 414 ~--~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~-------------~t~~~ll~~~~~~g-------~~~~a~~~~ 469 (641)
| .....+|.+.|++..|++-|....+. .+.-|. .+|..++...-+.. -...|.+++
T Consensus 306 Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iY 385 (517)
T PF12569_consen 306 WFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIY 385 (517)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Confidence 3 23456778888888887766655431 112222 22333333221111 112344554
Q ss_pred HHHHhhhCCCCCC--Ch---------hHHHHHHHHh---hccCChHHHHHHHH-----------hC----CCCCChhHHH
Q 048321 470 IIQYDDKGISYNP--EL---------DHYSCMADLL---GRKGKLKEALDFVQ-----------SM----PIKSDAGIWG 520 (641)
Q Consensus 470 ~~~~~~~~~~~~p--~~---------~~~~~l~~~~---~~~g~~~~A~~~~~-----------~~----~~~p~~~~~~ 520 (641)
-.+..... ... .. .--..+..-. .+...-+++...-. .. +.+.|.....
T Consensus 386 l~l~d~~~--~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp~G 463 (517)
T PF12569_consen 386 LELHDKPE--AKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDDPLG 463 (517)
T ss_pred HHHhcCcc--cccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCCCccH
Confidence 44442111 000 00 0001111000 11111122221110 00 1122222221
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHH
Q 048321 521 TLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTM 575 (641)
Q Consensus 521 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~ 575 (641)
.-+. ....=.++|.+.++-+.+..|++..+|..-.++|.+.|++--|.+-+..
T Consensus 464 ekL~--~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 464 EKLL--KTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred HHHh--cCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 1111 2234578899999999999999999999999999999999988887653
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.6e-06 Score=87.76 Aligned_cols=143 Identities=13% Similarity=0.209 Sum_probs=117.0
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHH
Q 048321 411 VVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCM 490 (641)
Q Consensus 411 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l 490 (641)
...|+.+..+-.+.|...+|++-|-+. -|+..|..++..+.+.|.+++-.+++..+. +.. ..|.+ -+.|
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaR-kk~--~E~~i--d~eL 1172 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMAR-KKV--REPYI--DSEL 1172 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHH-Hhh--cCccc--hHHH
Confidence 357999999999999999999877543 356789999999999999999999887666 444 45554 4678
Q ss_pred HHHhhccCChHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHH
Q 048321 491 ADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVA 570 (641)
Q Consensus 491 ~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~ 570 (641)
|.+|++.+++.|-++++. .||..-......-|...|.++.|.-++. +.+.|..|+..+...|.+..|.
T Consensus 1173 i~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~--------~vSN~a~La~TLV~LgeyQ~AV 1240 (1666)
T KOG0985|consen 1173 IFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYS--------NVSNFAKLASTLVYLGEYQGAV 1240 (1666)
T ss_pred HHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHH--------HhhhHHHHHHHHHHHHHHHHHH
Confidence 999999999999888774 4888888899999999999999887775 3567888999999999998887
Q ss_pred HHHHHH
Q 048321 571 NIRTMM 576 (641)
Q Consensus 571 ~~~~~m 576 (641)
+--++.
T Consensus 1241 D~aRKA 1246 (1666)
T KOG0985|consen 1241 DAARKA 1246 (1666)
T ss_pred HHhhhc
Confidence 765544
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.11 E-value=9.5e-07 Score=83.14 Aligned_cols=408 Identities=10% Similarity=-0.018 Sum_probs=237.4
Q ss_pred HHHhCCChhHHHHHHHHhHh---CCCCCCcccHHHHHHHHhccCCchHHhHHHHHHhhccCcCCCChhHHHHHhhccCCC
Q 048321 28 EAVNKNEAHKTLLLFRQMKQ---NDIEPNNLTFPFIAKACAKLSDLIYSQMIHGHIVKSPFVKCDRLDCAYKIFDEMAVR 104 (641)
Q Consensus 28 ~~~~~~~~~~A~~~~~~m~~---~g~~p~~~t~~~ll~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~A~~~f~~~~~~ 104 (641)
..-+...+..|..-|....+ ....|+..+..++-+.++.-++.+..+...+.- ...++-+.|.....+.++.
T Consensus 52 ~~~h~r~yr~a~~~~~~~~~~~~s~~r~s~~~~~s~~~S~~~~~~~e~~r~~aecy-----~~~~n~~~Ai~~l~~~p~t 126 (564)
T KOG1174|consen 52 ANYKERNYRAALRHFDEIIHKRRLMMRHKNAVLVAIESSYPEFGDAEQRRRAAECY-----RQIGNTDMAIETLLQVPPT 126 (564)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhHhhccccccccccccccCCCcccHHHHHHHHHHH-----HHHccchHHHHHHhcCCcc
Confidence 33344556666666666543 345666666666666666555554433332211 2346778888888888754
Q ss_pred -CcccHHHHHHHHHhcCC--hhH-------------HHHHHHHHHHcCC---------------CCChhhHHHHHHHHhc
Q 048321 105 -DVASWNAMLVGFAQMGF--LEN-------------VLRLFYNMRLVGI---------------QADFVTVMGLTQAAIH 153 (641)
Q Consensus 105 -~~~~~~~li~~~~~~g~--~~~-------------a~~l~~~m~~~g~---------------~p~~~t~~~ll~~~~~ 153 (641)
...--|.|+.-+-+.|. .+. |+..+.-..+.++ .|+..+...-+++++.
T Consensus 127 ~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq 206 (564)
T KOG1174|consen 127 LRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVNGNEINSLVMHAATVPDHFDWLSKWIKALAQ 206 (564)
T ss_pred ccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhcchhhhhhhhhheecCCCccHHHHHHHHHHH
Confidence 33334444444443332 111 2222222222222 2222233333343332
Q ss_pred --cCChhHHHHHHHHHHHH-cCCCChhHHHHHHHHhHcCCChhHHHHHHhcccCCCCC-chhHHHHHHHHhcCCCchHHH
Q 048321 154 --AKHLSLLKSVHSFGIHI-GVDADVSVCNTWISSYAKCDDLKMAELVFCGIEERLRT-VVSWNSMVAGCTYGDKFDDSL 229 (641)
Q Consensus 154 --~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~ 229 (641)
.++-..+.+.+-.+... -++.|+.....+.+.+...|+.++|...|++.....|+ +.......-.+.+.|+++...
T Consensus 207 ~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~ 286 (564)
T KOG1174|consen 207 MFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDS 286 (564)
T ss_pred HHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHH
Confidence 23333333333333332 24556677788888888888888888888887663121 222222233345677777777
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC---C
Q 048321 230 NFYRHMMYNGFRLDVTTVVSLLSSFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGI---C 306 (641)
Q Consensus 230 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~ 306 (641)
.+...+.... .-....|-.-+...-...+++.|..+-+..++.. +.+...+-.-...+...++.++|.-.|+.. .
T Consensus 287 ~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La 364 (564)
T KOG1174|consen 287 ALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA 364 (564)
T ss_pred HHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc
Confidence 7766665421 1122222222333345667777777777776654 334455555556677788888888888765 2
Q ss_pred CCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHH-HHhc-CcCchHHHHHHHHHHHHcCCCCchhHHH
Q 048321 307 DRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMI-SGCG-QSGALELGKWFDNYACSGGLKDNVMVCN 384 (641)
Q Consensus 307 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll-~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 384 (641)
+-+...|.-|+.+|...|.+.+|.-+-+...+. +..+..+++.+. ..|. ...--++|..+++...+.. +.-....+
T Consensus 365 p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~-P~Y~~AV~ 442 (564)
T KOG1174|consen 365 PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN-PIYTPAVN 442 (564)
T ss_pred hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC-CccHHHHH
Confidence 346678888888888888888887766554432 233444444442 2232 2334577888887776654 33345667
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh
Q 048321 385 ALIDMYSKCGSIGDARELFYALPE--KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNR 446 (641)
Q Consensus 385 ~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 446 (641)
.+...+...|..+++..+++.... +|....+.|...+...+.+++|++.|....+. .|+.
T Consensus 443 ~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~--dP~~ 504 (564)
T KOG1174|consen 443 LIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ--DPKS 504 (564)
T ss_pred HHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--Cccc
Confidence 777788888888888888887654 78888888888888888888888888888774 5543
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.7e-06 Score=86.24 Aligned_cols=453 Identities=9% Similarity=-0.029 Sum_probs=228.6
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHHcCCCChhHHHHHHHHhH
Q 048321 108 SWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISSYA 187 (641)
Q Consensus 108 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 187 (641)
.|..++.+| ..+++...+.+.+...+. .+-...|....--.+...|+.++|....+...+..+ .+.++|..+.-.+-
T Consensus 10 lF~~~lk~y-E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~-~S~vCwHv~gl~~R 86 (700)
T KOG1156|consen 10 LFRRALKCY-ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDL-KSHVCWHVLGLLQR 86 (700)
T ss_pred HHHHHHHHH-HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCc-ccchhHHHHHHHHh
Confidence 344445544 346677777777666652 222233333333334456777777777766666433 25567777766666
Q ss_pred cCCChhHHHHHHhcccCC-CCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCCCCC-hhhHHHHHHHhcCCCchHHHHH
Q 048321 188 KCDDLKMAELVFCGIEER-LRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLD-VTTVVSLLSSFVCPEALVQGRL 265 (641)
Q Consensus 188 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~ 265 (641)
...++++|.+.|...... +.|...|.-+.-.-++.++++...+.-.+..+. .|+ ...|.....+.--.|+...|..
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~ 164 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALE 164 (700)
T ss_pred hhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 677788888888776665 455666666666666667777666666666553 233 3444555555666777777777
Q ss_pred HHHHHHHhC-CCCchhHHHHHH------HHHHhcCCHHHHHHHHhcCCCC--Ccc-hHHHHHHHHHhCCChhHHHHHHHH
Q 048321 266 VHSHGIHYG-FDLDVSVINTLI------SMYSKCGDIDSARVLFDGICDR--TRV-SWTAMISGYAQKGDLDEALRLFFA 335 (641)
Q Consensus 266 ~~~~~~~~g-~~~~~~~~~~li------~~~~~~g~~~~A~~~~~~~~~~--~~~-~~~~li~~~~~~g~~~~A~~~~~~ 335 (641)
+.+...+.. -.|+...+.... ....+.|.++.|.+.+....+. |-. .--.-...+.+.++.++|..++..
T Consensus 165 il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~ 244 (700)
T KOG1156|consen 165 ILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRR 244 (700)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHH
Confidence 777776655 244544443322 2334566777777666554322 111 122334556677778888888877
Q ss_pred HHHcCCCCCHHHHHHHHHHhc-C-cCchHHHHHHHHHHHHcC---CCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC
Q 048321 336 MEAAGELPDLVTVLSMISGCG-Q-SGALELGKWFDNYACSGG---LKDNVMVCNALIDMYSKCGSIGDARELFYALPEKI 410 (641)
Q Consensus 336 m~~~~~~p~~~t~~~ll~~~~-~-~~~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 410 (641)
++.. .||..-|...+..+. + .+..+....++....+.- ..|-....+ ++. -..-.+...+++..+.++.
T Consensus 245 Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlpls-vl~---~eel~~~vdkyL~~~l~Kg 318 (700)
T KOG1156|consen 245 LLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLS-VLN---GEELKEIVDKYLRPLLSKG 318 (700)
T ss_pred HHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHH-HhC---cchhHHHHHHHHHHHhhcC
Confidence 7765 466666655554443 1 222222224444333211 011000000 000 0001111122222222211
Q ss_pred -hhHHHHHHHHHHHcCChHHH----HHHHHHHHHcC----------CCCChh--hHHHHHHHHhccCChHHHHHHHHHHH
Q 048321 411 -VVSWTTMIAGCALNGEFVEA----LDLFHQLMELD----------LRPNRV--TFLAVLQACTHTGFLEKGWAISIIQY 473 (641)
Q Consensus 411 -~~~~~~li~~~~~~g~~~~A----~~~~~~m~~~g----------~~p~~~--t~~~ll~~~~~~g~~~~a~~~~~~~~ 473 (641)
+..+..+...|-.....+-. ..+...+...| -+|... |+..+...+-+.|+++.|..+.+.+.
T Consensus 319 ~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AI 398 (700)
T KOG1156|consen 319 VPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI 398 (700)
T ss_pred CCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh
Confidence 12222222222211111100 11111111111 023333 33445556667777777777777766
Q ss_pred hhhCCCCCCC-hhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCC-
Q 048321 474 DDKGISYNPE-LDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHS- 549 (641)
Q Consensus 474 ~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~- 549 (641)
. ..|+ ++.|..-...+...|.+++|..++++.. ..||..+-.--..-..+.++.++|.++......-+-+-
T Consensus 399 d-----HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~ 473 (700)
T KOG1156|consen 399 D-----HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAV 473 (700)
T ss_pred c-----cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchh
Confidence 3 2354 4555555666777777777777777765 33343332233333345666777776665544332210
Q ss_pred --------CccHHHHHHHHHhcCCchHHHHHHHHH
Q 048321 550 --------AAPYVEMANKYALGGRWDGVANIRTMM 576 (641)
Q Consensus 550 --------~~~~~~l~~~~~~~g~~~eA~~~~~~m 576 (641)
......=|..|.++|+|.+|.+-+..+
T Consensus 474 ~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 474 NNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred hhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 011112255677777777776655444
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.1e-07 Score=92.20 Aligned_cols=17 Identities=6% Similarity=0.346 Sum_probs=10.4
Q ss_pred HHhCCChhHHHHHHHHh
Q 048321 29 AVNKNEAHKTLLLFRQM 45 (641)
Q Consensus 29 ~~~~~~~~~A~~~~~~m 45 (641)
-...|+++.|..+++..
T Consensus 454 aid~~df~ra~afles~ 470 (1636)
T KOG3616|consen 454 AIDDGDFDRATAFLESL 470 (1636)
T ss_pred ccccCchHHHHHHHHhh
Confidence 34566777776666544
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=6e-06 Score=84.38 Aligned_cols=243 Identities=14% Similarity=0.088 Sum_probs=133.6
Q ss_pred hHHHHHH--HHHhCCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHhHHHHHHhhccCcCCCChhHHHHHh
Q 048321 21 QWNSQIR--EAVNKNEAHKTLLLFRQMKQNDIEPNNLTFPFIAKACAKLSDLIYSQMIHGHIVKSPFVKCDRLDCAYKIF 98 (641)
Q Consensus 21 ~~~~li~--~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~A~~~f 98 (641)
|-.+++. .|+--|+.+.|.+-.+-++ +...|..+.+.|.+..+++-|+...+++.. ...|+.+=
T Consensus 728 TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~--------aRgaRAlR 793 (1416)
T KOG3617|consen 728 TRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKN--------ARGARALR 793 (1416)
T ss_pred HHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhh--------hhhHHHHH
Confidence 4445553 4566777777777666554 355677888888888777777776666532 22222222
Q ss_pred hccCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHHcCCCChhH
Q 048321 99 DEMAVRDVASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSV 178 (641)
Q Consensus 99 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 178 (641)
+....++ ..=.-+.-...+.|-.++|+.+|++.++. ..+=+.|-..|.+++|.++-+.--+..+. .+
T Consensus 794 ~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr---~T 860 (1416)
T KOG3617|consen 794 RAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLR---NT 860 (1416)
T ss_pred HHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehh---hh
Confidence 2222221 10001111123345555555555555432 22333334445555555543322111111 12
Q ss_pred HHHHHHHhHcCCChhHHHHHHhcccC-----------C----------CCCchhHHHHHHHHhcCCCchHHHHHHHHHHH
Q 048321 179 CNTWISSYAKCDDLKMAELVFCGIEE-----------R----------LRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMY 237 (641)
Q Consensus 179 ~~~ll~~~~~~g~~~~A~~~~~~~~~-----------~----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 237 (641)
|..-..-+-..++.+.|++.|++... . ..|...|.-...-+-..|+.+.|+.+|...+.
T Consensus 861 yy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D 940 (1416)
T KOG3617|consen 861 YYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD 940 (1416)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh
Confidence 22222223333444444444433221 0 13445555555666667888888888877654
Q ss_pred CCCCCChhhHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC
Q 048321 238 NGFRLDVTTVVSLLSSFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGI 305 (641)
Q Consensus 238 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 305 (641)
|-++++..|-.|+.++|.++-++ ..|....-.|.+.|-..|++.+|..+|-+.
T Consensus 941 ---------~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 941 ---------YFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred ---------hhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 55677777788888888877655 346677777888888888888888888654
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.6e-07 Score=86.30 Aligned_cols=453 Identities=11% Similarity=0.064 Sum_probs=259.9
Q ss_pred HHHHHhCCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHhHHHHHHhhccCcCCCChhHHHHHhhccC---
Q 048321 26 IREAVNKNEAHKTLLLFRQMKQNDIEPNNLTFPFIAKACAKLSDLIYSQMIHGHIVKSPFVKCDRLDCAYKIFDEMA--- 102 (641)
Q Consensus 26 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~A~~~f~~~~--- 102 (641)
+.-+..+.++..|+.+++--...+-. .......-|..|. ...|++++|...+..+.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~E-EE~~~~lWia~C~--------------------fhLgdY~~Al~~Y~~~~~~~ 87 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDRE-EEDSLQLWIAHCY--------------------FHLGDYEEALNVYTFLMNKD 87 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchh-hhHHHHHHHHHHH--------------------HhhccHHHHHHHHHHHhccC
Confidence 45566677788887777655432222 1123333444442 34577777777776654
Q ss_pred CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHHcCCCChhHHHHH
Q 048321 103 VRDVASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTW 182 (641)
Q Consensus 103 ~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 182 (641)
.++...|-.|.-++.-.|.+.+|..+-....+ +...-..++...-+.++-++..++++.+... ..-.-+|
T Consensus 88 ~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSL 157 (557)
T KOG3785|consen 88 DAPAELGVNLACCKFYLGQYIEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSL 157 (557)
T ss_pred CCCcccchhHHHHHHHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhH
Confidence 34556666676666677888888877655422 2333444555556778888888887776653 2333445
Q ss_pred HHHhHcCCChhHHHHHHhcccCCCCCchhHHHH-HHHHhcCCCchHHHHHHHHHHHCCCCCCh-hhHHHHHHHhcCCCch
Q 048321 183 ISSYAKCDDLKMAELVFCGIEERLRTVVSWNSM-VAGCTYGDKFDDSLNFYRHMMYNGFRLDV-TTVVSLLSSFVCPEAL 260 (641)
Q Consensus 183 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~ 260 (641)
.++.-..-.+.+|+.++.++....|+-...|.- .-+|.+..-++-+.++++--.+. + ||+ ...+.......+.=+-
T Consensus 158 AsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~-pdStiA~NLkacn~fRl~ng 235 (557)
T KOG3785|consen 158 ASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-F-PDSTIAKNLKACNLFRLING 235 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-C-CCcHHHHHHHHHHHhhhhcc
Confidence 555444556889999999888754555555543 35677888888888888777664 2 443 3333333333332222
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-----cCCHHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHH
Q 048321 261 VQGRLVHSHGIHYGFDLDVSVINTLISMYSK-----CGDIDSARVLFDGICDRTRVSWTAMISGYAQKGDLDEALRLFFA 335 (641)
Q Consensus 261 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 335 (641)
..|.+-...+.+.+-..- ..+.-.++ ...-+.|++++-.+.+.=+.+--.|+--|.+.++..+|..+.++
T Consensus 236 r~ae~E~k~ladN~~~~~-----~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kd 310 (557)
T KOG3785|consen 236 RTAEDEKKELADNIDQEY-----PFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKD 310 (557)
T ss_pred chhHHHHHHHHhcccccc-----hhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhh
Confidence 223333333332221110 01111122 12334555555444222222333455567788888888888776
Q ss_pred HHHcCCCCCHHHHHHHHHH-----hcCcCchHHHHHHHHHHHHcCCCCchh-HHHHHHHHHHhcCCHHHHHHHHhhCCC-
Q 048321 336 MEAAGELPDLVTVLSMISG-----CGQSGALELGKWFDNYACSGGLKDNVM-VCNALIDMYSKCGSIGDARELFYALPE- 408 (641)
Q Consensus 336 m~~~~~~p~~~t~~~ll~~-----~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~- 408 (641)
+.- ..|-....-.+..+ ......+.-|.+.|+.+-.++...|.. --.++...+.-..++++.+-.++.+..
T Consensus 311 l~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY 388 (557)
T KOG3785|consen 311 LDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY 388 (557)
T ss_pred cCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 532 23333333222222 223335666777777766666544432 233455555556677887777777664
Q ss_pred ---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHH-HHhccCChHHHHHHHHHHHhhhCCCCCCCh
Q 048321 409 ---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQ-ACTHTGFLEKGWAISIIQYDDKGISYNPEL 484 (641)
Q Consensus 409 ---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~-~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~ 484 (641)
.|.+.+| +..+++..|.+.+|.++|-+.....+ -|..+|.+++. +|.+.+..+.|+.++-.+. ...+.
T Consensus 389 F~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~------t~~e~ 460 (557)
T KOG3785|consen 389 FTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEI-KNKILYKSMLARCYIRNKKPQLAWDMMLKTN------TPSER 460 (557)
T ss_pred hcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhh-hhhHHHHHHHHHHHHhcCCchHHHHHHHhcC------CchhH
Confidence 3444444 56788888999999988877654432 35567766655 7788888888888765443 11222
Q ss_pred hH-HHHHHHHhhccCChHHHHHHHHhCC-CCCChhHHHHHHHHH
Q 048321 485 DH-YSCMADLLGRKGKLKEALDFVQSMP-IKSDAGIWGTLLCAC 526 (641)
Q Consensus 485 ~~-~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~ll~~~ 526 (641)
.+ ...+..-+-+++.+--|-+.|+.+. ..|++..|..--.+|
T Consensus 461 fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pEnWeGKRGAC 504 (557)
T KOG3785|consen 461 FSLLQLIANDCYKANEFYYAAKAFDELEILDPTPENWEGKRGAC 504 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCccccCCccchH
Confidence 22 3344466678888877777777776 678888886544444
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.8e-07 Score=88.92 Aligned_cols=411 Identities=10% Similarity=0.026 Sum_probs=217.0
Q ss_pred HHHhccCChhHHHHHHHHHHHHcCCCChhHHHHHHHHhHcCCChhHHHHHHhcccCCCCC-chhHHHHHHHHhcCCCchH
Q 048321 149 QAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISSYAKCDDLKMAELVFCGIEERLRT-VVSWNSMVAGCTYGDKFDD 227 (641)
Q Consensus 149 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~ 227 (641)
.+....|+++.|...|-..+.... ++...|+.-..+|++.|++++|.+=-.+-.+..|+ ...|+-...++.-.|++++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p-~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSP-TNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCC-CccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHH
Confidence 455667777777777777776543 36667777777777777777776655444443233 5567777777777777777
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHhcCCC---chHHHHHHHHHHHHhC---CCCchhHHHHHHHHH----------Hh
Q 048321 228 SLNFYRHMMYNGFRLDVTTVVSLLSSFVCPE---ALVQGRLVHSHGIHYG---FDLDVSVINTLISMY----------SK 291 (641)
Q Consensus 228 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~---~~~~a~~~~~~~~~~g---~~~~~~~~~~li~~~----------~~ 291 (641)
|+.-|.+=++.. +-|...++.+..+..... +.-..-.++..+...- .......|..++..+ ..
T Consensus 89 A~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~ 167 (539)
T KOG0548|consen 89 AILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLN 167 (539)
T ss_pred HHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccc
Confidence 777777765532 123344455555541000 0000000000000000 000001111111111 00
Q ss_pred cCCHHHHHHHHhcCCCCCcchHHHHHHHHH-hCCChh----HHHHHHHHHHH-cCCCCCHHHHHHHHHHhcCcCchHHHH
Q 048321 292 CGDIDSARVLFDGICDRTRVSWTAMISGYA-QKGDLD----EALRLFFAMEA-AGELPDLVTVLSMISGCGQSGALELGK 365 (641)
Q Consensus 292 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~-~~g~~~----~A~~~~~~m~~-~~~~p~~~t~~~ll~~~~~~~~~~~a~ 365 (641)
..++..+.-.+...... .+...-.... ....+. .......++.+ ...+--..-...+..+.-+..+++.+.
T Consensus 168 d~r~m~a~~~l~~~~~~---~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~ 244 (539)
T KOG0548|consen 168 DPRLMKADGQLKGVDEL---LFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAI 244 (539)
T ss_pred cHHHHHHHHHHhcCccc---cccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHH
Confidence 00111111111000000 0000000000 000000 00000000000 000001112445555666666667777
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCh----------hHHHHHHHHHHHcCChHHHHHHHH
Q 048321 366 WFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKIV----------VSWTTMIAGCALNGEFVEALDLFH 435 (641)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----------~~~~~li~~~~~~g~~~~A~~~~~ 435 (641)
+-+....... .+..-++....+|...|.+.+....-....+..- .+...+..+|.+.++++.|+..|.
T Consensus 245 q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ 322 (539)
T KOG0548|consen 245 QHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQ 322 (539)
T ss_pred HHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHH
Confidence 7666666654 4455555566666666666655554444332111 122224456667788888999988
Q ss_pred HHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhH-HHHHHHHhhccCChHHHHHHHHhCC-CC
Q 048321 436 QLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDH-YSCMADLLGRKGKLKEALDFVQSMP-IK 513 (641)
Q Consensus 436 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~-~~ 513 (641)
+.......|+.. .+....+++....+...- +.|.... .-.-+..+.+.|++..|+..+.++. ..
T Consensus 323 kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~-----~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~ 388 (539)
T KOG0548|consen 323 KALTEHRTPDLL---------SKLKEAEKALKEAERKAY-----INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD 388 (539)
T ss_pred HHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHh-----hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Confidence 877654444422 222333444444433331 3344311 1222567788899999999998876 44
Q ss_pred C-ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048321 514 S-DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRNQ 580 (641)
Q Consensus 514 p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~~ 580 (641)
| |...|.....+|.+.|++..|+.-.+..++++|+....|..-+.++....+|++|.+.+++..+..
T Consensus 389 P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 389 PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4 677888888888899999999999999999999989999999999999999999999988877653
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.3e-06 Score=84.45 Aligned_cols=213 Identities=9% Similarity=0.053 Sum_probs=120.5
Q ss_pred HHHHHHhCCChhHHHHHHHHhHhCCCCCCcc-cHHHHHHHHhccCCchHHhHHHHHHhhccCcCCCChhHHHHHhhccCC
Q 048321 25 QIREAVNKNEAHKTLLLFRQMKQNDIEPNNL-TFPFIAKACAKLSDLIYSQMIHGHIVKSPFVKCDRLDCAYKIFDEMAV 103 (641)
Q Consensus 25 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~A~~~f~~~~~ 103 (641)
=+.-+...|++++|.....++...+ ||.. .+..=+-+. .+.+.+++|+++.+.-..
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~--pdd~~a~~cKvVal---------------------Iq~~ky~~ALk~ikk~~~ 74 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIV--PDDEDAIRCKVVAL---------------------IQLDKYEDALKLIKKNGA 74 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcC--CCcHhhHhhhHhhh---------------------hhhhHHHHHHHHHHhcch
Confidence 3566778899999999999999866 4433 333333333 334667777765544332
Q ss_pred CCcccHHH--HHHHH--HhcCChhHHHHHHHHHHHcCCCCCh-hhHHHHHHHHhccCChhHHHHHHHHHHHHcCC-CChh
Q 048321 104 RDVASWNA--MLVGF--AQMGFLENVLRLFYNMRLVGIQADF-VTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVD-ADVS 177 (641)
Q Consensus 104 ~~~~~~~~--li~~~--~~~g~~~~a~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~ 177 (641)
. .++|. +=.+| -+.+..++|+..++ |..++. .+...-...|.+.++++++..+|+.+.+.+.+ .+..
T Consensus 75 ~--~~~~~~~fEKAYc~Yrlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~ 147 (652)
T KOG2376|consen 75 L--LVINSFFFEKAYCEYRLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEE 147 (652)
T ss_pred h--hhcchhhHHHHHHHHHcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHH
Confidence 1 12222 23444 46788888888887 333333 35555566788888999999999988876543 1222
Q ss_pred HHHHHHHHhHcCCChhHHHHHHhcccCCCCCchhHHHH---HHHHhcCCCchHHHHHHHHHHHCCCC-------CCh---
Q 048321 178 VCNTWISSYAKCDDLKMAELVFCGIEERLRTVVSWNSM---VAGCTYGDKFDDSLNFYRHMMYNGFR-------LDV--- 244 (641)
Q Consensus 178 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~-------p~~--- 244 (641)
.-..++.+-.. -.+. +.+..+.. ...+|..+ ...+...|++.+|+++++...+.+.+ -+.
T Consensus 148 ~r~nl~a~~a~----l~~~-~~q~v~~v--~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie 220 (652)
T KOG2376|consen 148 RRANLLAVAAA----LQVQ-LLQSVPEV--PEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIE 220 (652)
T ss_pred HHHHHHHHHHh----hhHH-HHHhccCC--CcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHH
Confidence 22222222111 1111 34444442 23344433 34567789999999998887332110 000
Q ss_pred ---hh-HHHHHHHhcCCCchHHHHHHHHHHHHhC
Q 048321 245 ---TT-VVSLLSSFVCPEALVQGRLVHSHGIHYG 274 (641)
Q Consensus 245 ---~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~g 274 (641)
.+ -..+.-.+...|+-++|..++..+++..
T Consensus 221 ~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~ 254 (652)
T KOG2376|consen 221 EELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN 254 (652)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc
Confidence 00 1122334455677777777777777766
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.3e-08 Score=99.78 Aligned_cols=219 Identities=11% Similarity=0.019 Sum_probs=176.9
Q ss_pred hcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHH
Q 048321 355 CGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEAL 431 (641)
Q Consensus 355 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 431 (641)
+.+.|++.+|.-.|+..++.. +.+...|.-|...-...++-..|+..+.+..+ .|....-.|.-.|...|.-.+|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 356777888888888888776 66778888888888888888888888888776 46677788888899999999999
Q ss_pred HHHHHHHHcCCC-----C---ChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHH
Q 048321 432 DLFHQLMELDLR-----P---NRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEA 503 (641)
Q Consensus 432 ~~~~~m~~~g~~-----p---~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 503 (641)
..++.-+....+ + +..+-.. ..+.+...+....++|-.+....+ ..+|.....+|.-+|--.|.+++|
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~--~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLP--TKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCC--CCCChhHHhhhHHHHhcchHHHHH
Confidence 999988764211 0 1000000 223334455667778888887777 678999999999999999999999
Q ss_pred HHHHHhCC-CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048321 504 LDFVQSMP-IKS-DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 504 ~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
.+.|+.+. .+| |...|+.|...+....+.++|+.++.+++++.|........|+-.|...|.|+||.+.+-....
T Consensus 450 iDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 450 VDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 99999977 666 6779999999999999999999999999999999999999999999999999999998876654
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=8.9e-09 Score=93.39 Aligned_cols=227 Identities=11% Similarity=0.012 Sum_probs=179.6
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcC--CCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHH-HHHH
Q 048321 278 DVSVINTLISMYSKCGDIDSARVLFDGI--CDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLS-MISG 354 (641)
Q Consensus 278 ~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~-ll~~ 354 (641)
|..--+.+.++|.+.|.+.+|.+.|+.- ..+-+.||-.|-+.|.+..++..|+.+|.+-.+. .|-.+||.. ....
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi 299 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARI 299 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHH
Confidence 3344567889999999999999998876 4466778888999999999999999999887764 677777653 4445
Q ss_pred hcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHH
Q 048321 355 CGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEAL 431 (641)
Q Consensus 355 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 431 (641)
+...++.+.+.++++...+.. +.++....++...|.-.++++.|...++++.+ .+...|+.+.-+|.-.++++-++
T Consensus 300 ~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 300 HEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred HHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhH
Confidence 667788899999999988865 55666667777788888999999999998765 57778888888888899999999
Q ss_pred HHHHHHHHcCCCCChh--hHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHh
Q 048321 432 DLFHQLMELDLRPNRV--TFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQS 509 (641)
Q Consensus 432 ~~~~~m~~~g~~p~~~--t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 509 (641)
..|++....--.|+.. .|..+-......|++..|.+.|+....... ...+.++.|.-+-.|.|++++|..+++.
T Consensus 379 ~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~----~h~ealnNLavL~~r~G~i~~Arsll~~ 454 (478)
T KOG1129|consen 379 PSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA----QHGEALNNLAVLAARSGDILGARSLLNA 454 (478)
T ss_pred HHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc----chHHHHHhHHHHHhhcCchHHHHHHHHH
Confidence 9999998765456654 566666677788999999999998874322 4467788888888888888888888887
Q ss_pred CC
Q 048321 510 MP 511 (641)
Q Consensus 510 ~~ 511 (641)
..
T Consensus 455 A~ 456 (478)
T KOG1129|consen 455 AK 456 (478)
T ss_pred hh
Confidence 65
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.7e-06 Score=88.78 Aligned_cols=533 Identities=13% Similarity=0.025 Sum_probs=309.0
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHhHHHHHHhh-------------ccC--
Q 048321 21 QWNSQIREAVNKNEAHKTLLLFRQMKQNDIEPNNLTFPFIAKACAKLSDLIYSQMIHGHIVK-------------SPF-- 85 (641)
Q Consensus 21 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~i~~~~~~-------------~~~-- 85 (641)
.|..|-..|..--+...|...|++..+.... +......+...|+...+++.|..|.-..-+ .|+
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 5777777777777888888888887763322 344566677778888888777776332222 122
Q ss_pred cCCCChhHHHHHhhccC---CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHH--HhccCChhHH
Q 048321 86 VKCDRLDCAYKIFDEMA---VRDVASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQA--AIHAKHLSLL 160 (641)
Q Consensus 86 ~~~~~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~--~~~~~~~~~a 160 (641)
...++...|..-|+..- +.|...|..+..+|.++|++..|+++|.+... +.|+. +|.....+ -+..|.+.++
T Consensus 573 Lea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~s-~y~~fk~A~~ecd~GkYkea 649 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPLS-KYGRFKEAVMECDNGKYKEA 649 (1238)
T ss_pred cCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcHh-HHHHHHHHHHHHHhhhHHHH
Confidence 55677888888887643 45788999999999999999999999998876 45654 33333322 3466888888
Q ss_pred HHHHHHHHHHc------CCCChhHHHHHHHHhHcCCChhHHHHHHhcccCC---------CCCchhHHHHHHHHhcCCCc
Q 048321 161 KSVHSFGIHIG------VDADVSVCNTWISSYAKCDDLKMAELVFCGIEER---------LRTVVSWNSMVAGCTYGDKF 225 (641)
Q Consensus 161 ~~~~~~~~~~~------~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~~~li~~~~~~g~~ 225 (641)
...++.++..- ...-..++-.+...+...|-...|...|+.-.+. ..+...|-.+
T Consensus 650 ld~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~a---------- 719 (1238)
T KOG1127|consen 650 LDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVA---------- 719 (1238)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHH----------
Confidence 88888776531 1111223333333333334444444444432221 1122222222
Q ss_pred hHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCch---H---HHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cC--
Q 048321 226 DDSLNFYRHMMYNGFRLDVTTVVSLLSSFVCPEAL---V---QGRLVHSHGIHYGFDLDVSVINTLISMYSK----CG-- 293 (641)
Q Consensus 226 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~---~---~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g-- 293 (641)
..|..+|-+.. .. .|+......+..-.-..+.. + .|.+-+-.-. .+..+...|..|+..|.+ +|
T Consensus 720 sdac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hl--sl~~~~~~WyNLGinylr~f~~l~et 795 (1238)
T KOG1127|consen 720 SDACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHL--SLAIHMYPWYNLGINYLRYFLLLGET 795 (1238)
T ss_pred hHHHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHH--HHhhccchHHHHhHHHHHHHHHcCCc
Confidence 23344444443 11 24444444443323222222 1 1111111111 112234444445444433 22
Q ss_pred --CHHHHHHHHhcC---CCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHH
Q 048321 294 --DIDSARVLFDGI---CDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFD 368 (641)
Q Consensus 294 --~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 368 (641)
+...|+..+... ...+..+||.|.-. ...|.+.-|...|-+-+... +....+|..+--.|....+++.|...+
T Consensus 796 ~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af 873 (1238)
T KOG1127|consen 796 MKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAF 873 (1238)
T ss_pred chhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHH
Confidence 234566666644 45677789888766 66678888888776665542 345567877877888899999999999
Q ss_pred HHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhC-----CC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHH-
Q 048321 369 NYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYAL-----PE---KIVVSWTTMIAGCALNGEFVEALDLFHQLME- 439 (641)
Q Consensus 369 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-----~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~- 439 (641)
...+... +.+...|-.........|+.-++..+|..- .. ++..-|-.-..-..++|+.++-+..-+.+-.
T Consensus 874 ~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sA 952 (1238)
T KOG1127|consen 874 SSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSA 952 (1238)
T ss_pred HhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhh
Confidence 9887654 445555555554556678888888888762 11 4455555555555667776655444333221
Q ss_pred --------cCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHH----HHHHhhccCChHHHHHHH
Q 048321 440 --------LDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSC----MADLLGRKGKLKEALDFV 507 (641)
Q Consensus 440 --------~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~----l~~~~~~~g~~~~A~~~~ 507 (641)
.|.+-+...|.....-..+.+.++.|.+...+...-.. .+-+...|+. +...+...|.++.|..-+
T Consensus 953 s~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe--~k~d~sqynvak~~~gRL~lslgefe~A~~a~ 1030 (1238)
T KOG1127|consen 953 SLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLE--LKLDESQYNVAKPDAGRLELSLGEFESAKKAS 1030 (1238)
T ss_pred HHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhhhhhhhhhhhhhhhhhcchhhHhhhh
Confidence 12233456777777777777777777766665543222 2344445553 345566778888877777
Q ss_pred HhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHH---HHHHHHHhcCCchHHHHHHHHHH
Q 048321 508 QSMPIKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYV---EMANKYALGGRWDGVANIRTMMK 577 (641)
Q Consensus 508 ~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~---~l~~~~~~~g~~~eA~~~~~~m~ 577 (641)
...+...+..+...-+.. .-.++++++.+.|++++.+.-++....+ .++.....+|.-+.|...+-+..
T Consensus 1031 ~~~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~ 1102 (1238)
T KOG1127|consen 1031 WKEWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVK 1102 (1238)
T ss_pred cccchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHH
Confidence 665533344433333333 4567899999999998887655443222 33444556666777776554443
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.94 E-value=3e-07 Score=79.97 Aligned_cols=189 Identities=14% Similarity=-0.007 Sum_probs=93.8
Q ss_pred HhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHH
Q 048321 354 GCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEA 430 (641)
Q Consensus 354 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 430 (641)
.|...|+...|+.-+++.++.. +.+..++..+...|.+.|..+.|.+-|+...+ .+....|....-+|..|++++|
T Consensus 44 ~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA 122 (250)
T COG3063 44 GYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEA 122 (250)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHH
Confidence 3444444444444444444433 33344455555555555555555555554433 2334444445555555555555
Q ss_pred HHHHHHHHHcCCCCCh-hhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCC-hhHHHHHHHHhhccCChHHHHHHHH
Q 048321 431 LDLFHQLMELDLRPNR-VTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPE-LDHYSCMADLLGRKGKLKEALDFVQ 508 (641)
Q Consensus 431 ~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 508 (641)
...|++....-.-|.. .||..+.-+..+.|+.+.|..+|++..+. .|+ ....-.+.......|++-.|..+++
T Consensus 123 ~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~-----dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~ 197 (250)
T COG3063 123 MQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL-----DPQFPPALLELARLHYKAGDYAPARLYLE 197 (250)
T ss_pred HHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh-----CcCCChHHHHHHHHHHhcccchHHHHHHH
Confidence 5555555543212221 24555444445555555555555555531 222 3344455555555555555555555
Q ss_pred hCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCC
Q 048321 509 SMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPH 548 (641)
Q Consensus 509 ~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 548 (641)
... ..++..+....+..-...||.+.+-+.-.++....|.
T Consensus 198 ~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~ 239 (250)
T COG3063 198 RYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPY 239 (250)
T ss_pred HHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 543 2344444444444455556655555555555555554
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.92 E-value=6.7e-08 Score=91.84 Aligned_cols=161 Identities=12% Similarity=0.001 Sum_probs=111.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHh--
Q 048321 380 VMVCNALIDMYSKCGSIGDARELFYALPEKIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACT-- 457 (641)
Q Consensus 380 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-- 457 (641)
..+......+|...|++++|+++++.. .+.......+..|.+.++++.|.+.++.|.+. ..| .+...+..++.
T Consensus 102 ~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l 176 (290)
T PF04733_consen 102 EIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNL 176 (290)
T ss_dssp HHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHH
Confidence 333333445666778888888888765 45566667788888899999999999998864 334 34444444332
Q ss_pred --ccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCC-ChhHHHHHHHHHHHcCCH-
Q 048321 458 --HTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHLNI- 532 (641)
Q Consensus 458 --~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~- 532 (641)
..+.+.+|.-+|+++.+++| +++...+.+..++...|++++|.+++.+.. ..| |+.++..++..+...|+.
T Consensus 177 ~~g~e~~~~A~y~f~El~~~~~----~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~ 252 (290)
T PF04733_consen 177 ATGGEKYQDAFYIFEELSDKFG----STPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPT 252 (290)
T ss_dssp HHTTTCCCHHHHHHHHHHCCS------SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TC
T ss_pred HhCchhHHHHHHHHHHHHhccC----CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCCh
Confidence 23468889999999886655 777888888888888888888888888755 333 556777777777777766
Q ss_pred HHHHHHHHHhHccCCCC
Q 048321 533 EIGEYVAYCLFKLEPHS 549 (641)
Q Consensus 533 ~~a~~~~~~~~~~~p~~ 549 (641)
+.+.+...++....|++
T Consensus 253 ~~~~~~l~qL~~~~p~h 269 (290)
T PF04733_consen 253 EAAERYLSQLKQSNPNH 269 (290)
T ss_dssp HHHHHHHHHCHHHTTTS
T ss_pred hHHHHHHHHHHHhCCCC
Confidence 67778888888888874
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.91 E-value=0.00016 Score=76.02 Aligned_cols=461 Identities=13% Similarity=0.084 Sum_probs=248.0
Q ss_pred ChhHHHHHhhccCC--CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHH
Q 048321 90 RLDCAYKIFDEMAV--RDVASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFG 167 (641)
Q Consensus 90 ~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 167 (641)
.++.+.+.-..++. +...-++.+...+...+....+..++-...+. ..|+....-+-+---.-.+-++ +-+.+
T Consensus 524 sPD~~~qFa~~l~Q~~~~~~die~I~DlFme~N~iQq~TSFLLdaLK~-~~Pd~g~LQTrLLE~NL~~aPq----VADAI 598 (1666)
T KOG0985|consen 524 SPDQALQFAMMLVQDEEPLADIEQIVDLFMELNLIQQCTSFLLDALKL-NSPDEGHLQTRLLEMNLVHAPQ----VADAI 598 (1666)
T ss_pred ChhHHHHHHHHhhccCCCcccHHHHHHHHHHHHhhhhhHHHHHHHhcC-CChhhhhHHHHHHHHHhccchH----HHHHH
Confidence 45555555444442 23445677777777777777777777666553 3565544333222111222222 33333
Q ss_pred HHHcCCCChhHHHHHHHHhHcCCChhHHHHHHhcccCCCCCchhHH----HHHHHHhcCCCchHHHHHHHHHHHCCCCCC
Q 048321 168 IHIGVDADVSVCNTWISSYAKCDDLKMAELVFCGIEERLRTVVSWN----SMVAGCTYGDKFDDSLNFYRHMMYNGFRLD 243 (641)
Q Consensus 168 ~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 243 (641)
.-.+.- +..-+..+.+.|.+.|-...|++.|..+....+.++.-+ ..+-.|.-.-.++++++.++.|...+++.|
T Consensus 599 LgN~mF-tHyDra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqN 677 (1666)
T KOG0985|consen 599 LGNDMF-THYDRAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQN 677 (1666)
T ss_pred Hhcccc-ccccHHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhh
Confidence 332221 222266778889999999999988877765422222111 123345555678899999999999888888
Q ss_pred hhhHHHHHHHhcCCCchHHHHHHHHHHHH-----------hCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----
Q 048321 244 VTTVVSLLSSFVCPEALVQGRLVHSHGIH-----------YGFDLDVSVINTLISMYSKCGDIDSARVLFDGICD----- 307 (641)
Q Consensus 244 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-----------~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----- 307 (641)
..+...+..-|...=..+...++|+.... .++.-|+.+.-..|.+-++.|++.+..++.++-.-
T Consensus 678 lQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpEr 757 (1666)
T KOG0985|consen 678 LQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPER 757 (1666)
T ss_pred hHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHH
Confidence 77666555555443333333444433322 13456777777889999999999998887654310
Q ss_pred --------------C------------CcchH---H---HHHHHHHhCCChhHHHHHHHHHHHcCCCCCH----------
Q 048321 308 --------------R------------TRVSW---T---AMISGYAQKGDLDEALRLFFAMEAAGELPDL---------- 345 (641)
Q Consensus 308 --------------~------------~~~~~---~---~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---------- 345 (641)
| |.+.| | -.|..|.+.=+....-.+...+....+.-+.
T Consensus 758 vKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~g 837 (1666)
T KOG0985|consen 758 VKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRG 837 (1666)
T ss_pred HHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhc
Confidence 0 11111 0 1233333332222221111111111110000
Q ss_pred -HHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHH--------------------------
Q 048321 346 -VTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGD-------------------------- 398 (641)
Q Consensus 346 -~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-------------------------- 398 (641)
+....+..-+.+.+++..-..+++..+..| ..|+.++|+|...|...++-.+
T Consensus 838 q~~~deLv~EvEkRNRLklLlp~LE~~i~eG-~~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA 916 (1666)
T KOG0985|consen 838 QFPVDELVEEVEKRNRLKLLLPWLESLIQEG-SQDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLA 916 (1666)
T ss_pred cCChHHHHHHHHhhhhHHHHHHHHHHHHhcc-CcchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceE
Confidence 001123333444555555556666666666 4567777777776655432211
Q ss_pred --------------------------HHHHHhhC--------C--------------------C-CChhHHHHHHHHHHH
Q 048321 399 --------------------------ARELFYAL--------P--------------------E-KIVVSWTTMIAGCAL 423 (641)
Q Consensus 399 --------------------------A~~~~~~~--------~--------------------~-~~~~~~~~li~~~~~ 423 (641)
|+-+.++. . + .|+...+.-+.++..
T Consensus 917 ~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMt 996 (1666)
T KOG0985|consen 917 CVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMT 996 (1666)
T ss_pred EEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHh
Confidence 11000000 0 0 122233334455556
Q ss_pred cCChHHHHHHHHHHHHcCCCCChh----hHHHH----------------------------HHHHhccCChHHHHHHHHH
Q 048321 424 NGEFVEALDLFHQLMELDLRPNRV----TFLAV----------------------------LQACTHTGFLEKGWAISII 471 (641)
Q Consensus 424 ~g~~~~A~~~~~~m~~~g~~p~~~----t~~~l----------------------------l~~~~~~g~~~~a~~~~~~ 471 (641)
.+-+.+-++++++..-. |+.. ....+ ...+...+.+++|..+|+.
T Consensus 997 adLp~eLIELLEKIvL~---~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkk 1073 (1666)
T KOG0985|consen 997 ADLPNELIELLEKIVLD---NSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKK 1073 (1666)
T ss_pred cCCcHHHHHHHHHHhcC---CcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHH
Confidence 66666666666665532 1111 11111 1112223445555555543
Q ss_pred HHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCc
Q 048321 472 QYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAA 551 (641)
Q Consensus 472 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 551 (641)
.- .+......|++ .-+.+|+|.++-++.. .+.+|..+..+-...|.+.+|++-+-++ +||+
T Consensus 1074 f~--------~n~~A~~VLie---~i~~ldRA~efAe~~n---~p~vWsqlakAQL~~~~v~dAieSyika-----dDps 1134 (1666)
T KOG0985|consen 1074 FD--------MNVSAIQVLIE---NIGSLDRAYEFAERCN---EPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPS 1134 (1666)
T ss_pred hc--------ccHHHHHHHHH---HhhhHHHHHHHHHhhC---ChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcH
Confidence 21 22233333332 3455666666655543 4578999999999999999998877543 6789
Q ss_pred cHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 552 PYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 552 ~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
.|..++++-.+.|+|++-.+++...+.+
T Consensus 1135 ~y~eVi~~a~~~~~~edLv~yL~MaRkk 1162 (1666)
T KOG0985|consen 1135 NYLEVIDVASRTGKYEDLVKYLLMARKK 1162 (1666)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 9999999999999999999988776654
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.3e-05 Score=80.90 Aligned_cols=353 Identities=14% Similarity=0.094 Sum_probs=158.6
Q ss_pred HHHHHhHcCCChhHHHHHHhcccCCCCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCch
Q 048321 181 TWISSYAKCDDLKMAELVFCGIEERLRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVVSLLSSFVCPEAL 260 (641)
Q Consensus 181 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 260 (641)
+-|+.|.+.|....|.+.-..-.....|......+..++.+..-+++|-++|+++.. +...+..+-+...+
T Consensus 620 aaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d---------~dkale~fkkgdaf 690 (1636)
T KOG3616|consen 620 AAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHD---------FDKALECFKKGDAF 690 (1636)
T ss_pred HHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC---------HHHHHHHHHcccHH
Confidence 457788888888777665533222234555566666666666667777777766643 11222222222223
Q ss_pred HHHHHHHHHHHHhCCCCchhHH-HHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 048321 261 VQGRLVHSHGIHYGFDLDVSVI-NTLISMYSKCGDIDSARVLFDGICDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAA 339 (641)
Q Consensus 261 ~~a~~~~~~~~~~g~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 339 (641)
-+|.++-+... +..++.. ..-...+...|+++.|...|-+.. ..---|.+......+.+|+.+++.++.+
T Consensus 691 ~kaielarfaf----p~evv~lee~wg~hl~~~~q~daainhfiea~-----~~~kaieaai~akew~kai~ildniqdq 761 (1636)
T KOG3616|consen 691 GKAIELARFAF----PEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN-----CLIKAIEAAIGAKEWKKAISILDNIQDQ 761 (1636)
T ss_pred HHHHHHHHhhC----cHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh-----hHHHHHHHHhhhhhhhhhHhHHHHhhhh
Confidence 33333322211 1111110 111222233344444444443220 0011123334445555555555554433
Q ss_pred CCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC--hhHHHHH
Q 048321 340 GELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKI--VVSWTTM 417 (641)
Q Consensus 340 ~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~l 417 (641)
. .-.--|..+...|+..|+++.|+++|-+. ..++--|+||.+.|++++|.++-.+...|. +.+|-+-
T Consensus 762 k--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiak 830 (1636)
T KOG3616|consen 762 K--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAK 830 (1636)
T ss_pred c--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHh
Confidence 2 11222344444555555555555554322 123334555555555555555555544432 2233333
Q ss_pred HHHHHHcCChHHHHHHHHHHHHc---------------------CCCCCh--hhHHHHHHHHhccCChHHHHHHHHHHHh
Q 048321 418 IAGCALNGEFVEALDLFHQLMEL---------------------DLRPNR--VTFLAVLQACTHTGFLEKGWAISIIQYD 474 (641)
Q Consensus 418 i~~~~~~g~~~~A~~~~~~m~~~---------------------g~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 474 (641)
..-+-.+|++.+|.++|-....- ...|+. .|...+..-+...|++..|..-|-+..
T Consensus 831 aedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~- 909 (1636)
T KOG3616|consen 831 AEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG- 909 (1636)
T ss_pred HHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhh-
Confidence 33344444444444433221100 001222 244444455555555555554443322
Q ss_pred hhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHh------Hcc---
Q 048321 475 DKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHLNIEIGEYVAYCL------FKL--- 545 (641)
Q Consensus 475 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~------~~~--- 545 (641)
-|.+-+++|-..+.+++|..+-+.-. ..|..--...+++-...|+ .|.+++.+. +..
T Consensus 910 -----------d~kaavnmyk~s~lw~dayriakteg-g~n~~k~v~flwaksiggd--aavkllnk~gll~~~id~a~d 975 (1636)
T KOG3616|consen 910 -----------DFKAAVNMYKASELWEDAYRIAKTEG-GANAEKHVAFLWAKSIGGD--AAVKLLNKHGLLEAAIDFAAD 975 (1636)
T ss_pred -----------hHHHHHHHhhhhhhHHHHHHHHhccc-cccHHHHHHHHHHHhhCcH--HHHHHHHhhhhHHHHhhhhhc
Confidence 23444555555666666655544322 1122223333444333332 344444431 110
Q ss_pred ---------------CCCCCccHHHHHHHHHhcCCchHHHHHHHHHH
Q 048321 546 ---------------EPHSAAPYVEMANKYALGGRWDGVANIRTMMK 577 (641)
Q Consensus 546 ---------------~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~ 577 (641)
...-+..+..++.-+-..|++++|.+-+-+..
T Consensus 976 ~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveai 1022 (1636)
T KOG3616|consen 976 NCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAI 1022 (1636)
T ss_pred ccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHh
Confidence 11124556667777888899999877655443
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.6e-08 Score=94.66 Aligned_cols=246 Identities=10% Similarity=-0.002 Sum_probs=158.7
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHH
Q 048321 318 SGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIG 397 (641)
Q Consensus 318 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 397 (641)
+-+.-.|++..++.-.+ ........+..+...+.+++...|..+.+ ...+.+.. .|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~v---l~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSV---LSEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHH---HHHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHH---HHHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 33445677777775544 22211112233444555666666765543 23333333 555555555555444445566
Q ss_pred HHHHHHhhCCC-C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHH
Q 048321 398 DARELFYALPE-K----IVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQ 472 (641)
Q Consensus 398 ~A~~~~~~~~~-~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 472 (641)
.+..-+++... + +....-.....+...|++++|++++++- .+.......+..|.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666655443 2 2222222223455679999999988753 34456666778999999999999999999
Q ss_pred HhhhCCCCCCChhH---HHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCC
Q 048321 473 YDDKGISYNPELDH---YSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEP 547 (641)
Q Consensus 473 ~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 547 (641)
.+ +..|... ..+.+..+.-...+.+|..+|+++. ..+++.+.+.+..++...|++++|+..++++++.+|
T Consensus 158 ~~-----~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~ 232 (290)
T PF04733_consen 158 QQ-----IDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP 232 (290)
T ss_dssp HC-----CSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C
T ss_pred Hh-----cCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence 84 3345322 2334444444457999999999987 457788889999999999999999999999999999
Q ss_pred CCCccHHHHHHHHHhcCCc-hHHHHHHHHHHhC
Q 048321 548 HSAAPYVEMANKYALGGRW-DGVANIRTMMKRN 579 (641)
Q Consensus 548 ~~~~~~~~l~~~~~~~g~~-~eA~~~~~~m~~~ 579 (641)
+++.+...++-+..-.|+. +.+.+++.+++..
T Consensus 233 ~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 233 NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 9999999999999999998 6678899888763
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.9e-06 Score=76.47 Aligned_cols=408 Identities=11% Similarity=0.010 Sum_probs=212.5
Q ss_pred hhHHHHHHHHhccCChhHHHHHHHHHHHHcCCCChhHHHHHHHHhHcCCChhHHHHHHhcccCCCCCchhHHHH-HHHHh
Q 048321 142 VTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISSYAKCDDLKMAELVFCGIEERLRTVVSWNSM-VAGCT 220 (641)
Q Consensus 142 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l-i~~~~ 220 (641)
.-|.+++..+.+..++..+.+++..-.+.. +.+..-.+.|..+|-...++..|-..++++....|...-|... ...+.
T Consensus 11 Geftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 11 GEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLY 89 (459)
T ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHH
Confidence 335555555566666666666655544432 1144445556666777777777777777766654443333322 34556
Q ss_pred cCCCchHHHHHHHHHHHCCCCCChhhHHHHHHH--hcCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 048321 221 YGDKFDDSLNFYRHMMYNGFRLDVTTVVSLLSS--FVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSA 298 (641)
Q Consensus 221 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~--~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 298 (641)
+.+.+.+|+.+...|... |+...-..-+.+ ..+.+++..+..+.++.... .+..+.+.......+.|+.+.|
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHH
Confidence 677777777777777542 222211111111 23455666666665554322 2344444455555667777777
Q ss_pred HHHHhcCCC----CCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHH-HH---HHHHHhcCcCchHHHHHHHHH
Q 048321 299 RVLFDGICD----RTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVT-VL---SMISGCGQSGALELGKWFDNY 370 (641)
Q Consensus 299 ~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t-~~---~ll~~~~~~~~~~~a~~~~~~ 370 (641)
.+-|+...+ .....||.-+..| +.|+++.|+++..+++++|++-.+.. .. -.+.+ ...|+. ..++..
T Consensus 164 vqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv-rsvgNt---~~lh~S 238 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV-RSVGNT---LVLHQS 238 (459)
T ss_pred HHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch-hcccch---HHHHHH
Confidence 777765532 2334566544433 45667777777777777766432210 00 00000 000000 000000
Q ss_pred HHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCC-----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-
Q 048321 371 ACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEK-----IVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRP- 444 (641)
Q Consensus 371 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p- 444 (641)
. -+..+|.-...+.+.|+++.|.+.+-.|+.+ |++|...+.-.- ..+++.+..+-+.-+.+. .|
T Consensus 239 a-------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~--nPf 308 (459)
T KOG4340|consen 239 A-------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQ--NPF 308 (459)
T ss_pred H-------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhc--CCC
Confidence 0 0123343444567889999999999999863 666665543222 235566666655555554 34
Q ss_pred ChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhh-ccCChHHHHHHHHhCCCCCChhHHHHHH
Q 048321 445 NRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLG-RKGKLKEALDFVQSMPIKSDAGIWGTLL 523 (641)
Q Consensus 445 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~p~~~~~~~ll 523 (641)
...||..++-.||+..-++.|-.++.+-....- .-.+...|+ +++++. ..-..++|++-++.+....-. -.+.+.
T Consensus 309 P~ETFANlLllyCKNeyf~lAADvLAEn~~lTy--k~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~-kLRklA 384 (459)
T KOG4340|consen 309 PPETFANLLLLYCKNEYFDLAADVLAENAHLTY--KFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTE-KLRKLA 384 (459)
T ss_pred ChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhH--HHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 346999999999999988888777643210000 001222333 334443 345677777666554300000 011110
Q ss_pred -HHH-HHcCCHHHH----HHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048321 524 -CAC-KIHLNIEIG----EYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 524 -~~~-~~~g~~~~a----~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
..- .++.+-+++ ++-+++.+++. -......+++|++..++..++++|+.-.+
T Consensus 385 i~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 385 IQVQEARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 100 112222222 22233444431 12345668899999999999999876544
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.4e-06 Score=89.00 Aligned_cols=127 Identities=13% Similarity=-0.026 Sum_probs=89.4
Q ss_pred HHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHH
Q 048321 347 TVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGCAL 423 (641)
Q Consensus 347 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 423 (641)
++..+...+...|++++|..+.+..++.. +..+..|..-...|-..|++.+|.+.++.... .|-..-+-.+..+.+
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR 274 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLR 274 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH
Confidence 34445556778888888888888888764 33467777788888888888888888887765 344566667777788
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhhH--------HHHHHHHhccCChHHHHHHHHHHHh
Q 048321 424 NGEFVEALDLFHQLMELDLRPNRVTF--------LAVLQACTHTGFLEKGWAISIIQYD 474 (641)
Q Consensus 424 ~g~~~~A~~~~~~m~~~g~~p~~~t~--------~~ll~~~~~~g~~~~a~~~~~~~~~ 474 (641)
.|+.++|.+++......+..|-...+ .....+|.+.|++..|+..|..+.+
T Consensus 275 a~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 275 AGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred CCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 88888888888888776654432111 2334577778888877776666554
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.83 E-value=9.3e-06 Score=81.58 Aligned_cols=256 Identities=12% Similarity=-0.042 Sum_probs=143.0
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCCH-HHHHH---HHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 048321 319 GYAQKGDLDEALRLFFAMEAAGELPDL-VTVLS---MISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCG 394 (641)
Q Consensus 319 ~~~~~g~~~~A~~~~~~m~~~~~~p~~-~t~~~---ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 394 (641)
.+...|++++|.+.+++..+. .|+. ..+.. ........+....+.+.+.. .....+........+...+...|
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~G 128 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDD--YPRDLLALKLHLGAFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEAG 128 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHhHHHHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHcC
Confidence 455677777777777777664 2332 22221 11111223444444444443 11111222334445566777788
Q ss_pred CHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCCh--hhHHHHHHHHhccCChHHHHHH
Q 048321 395 SIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDL-RPNR--VTFLAVLQACTHTGFLEKGWAI 468 (641)
Q Consensus 395 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~--~t~~~ll~~~~~~g~~~~a~~~ 468 (641)
++++|...+++..+ .+...+..+...+...|++++|...+++...... .|+. ..+..+...+...|++++|..+
T Consensus 129 ~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~ 208 (355)
T cd05804 129 QYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAI 208 (355)
T ss_pred CHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 88888888877655 3455677777778888888888888887776421 1222 1344566677788888888888
Q ss_pred HHHHHhhhCCCCCCChhHH-H--HHHHHhhccCChHHHHHH---HHhCC-CCCC---hhHHHHHHHHHHHcCCHHHHHHH
Q 048321 469 SIIQYDDKGISYNPELDHY-S--CMADLLGRKGKLKEALDF---VQSMP-IKSD---AGIWGTLLCACKIHLNIEIGEYV 538 (641)
Q Consensus 469 ~~~~~~~~~~~~~p~~~~~-~--~l~~~~~~~g~~~~A~~~---~~~~~-~~p~---~~~~~~ll~~~~~~g~~~~a~~~ 538 (641)
++......+ ..+..... + .+..-+...|..+.+... ..... ..|. .........++...|+.+.|...
T Consensus 209 ~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~ 286 (355)
T cd05804 209 YDTHIAPSA--ESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKL 286 (355)
T ss_pred HHHHhcccc--CCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHH
Confidence 887653211 11111111 1 222333333422222221 11111 1011 12223455666778888888888
Q ss_pred HHHhHccC-C--------CCCccHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 539 AYCLFKLE-P--------HSAAPYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 539 ~~~~~~~~-p--------~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
++.+.... . .......+.+.++.+.|++++|.+.+......
T Consensus 287 L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 287 LAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 87765421 1 12455667788899999999999998887654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.76 E-value=5.4e-06 Score=86.65 Aligned_cols=380 Identities=12% Similarity=-0.001 Sum_probs=223.9
Q ss_pred hHHHHHHHHhHcCCChhHHHHHHhcccCC-CCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCC-CCChhhHHHHHHHh
Q 048321 177 SVCNTWISSYAKCDDLKMAELVFCGIEER-LRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGF-RLDVTTVVSLLSSF 254 (641)
Q Consensus 177 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~ 254 (641)
..|..|...|+...+...|.+.|+..-+. ..+..++......|++...++.|..+.-..-+... ..-...+..+--.+
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 57888888888888899999999988876 56678889999999999999999988332222110 00111122223345
Q ss_pred cCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHH---HHHHHHhCCChhHHHH
Q 048321 255 VCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGICDRTRVSWTA---MISGYAQKGDLDEALR 331 (641)
Q Consensus 255 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---li~~~~~~g~~~~A~~ 331 (641)
...++...+..-|+...+.. +.|...|..|..+|.++|++..|.++|.+...-++.++-. .....+..|.+.+|+.
T Consensus 573 Lea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald 651 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALD 651 (1238)
T ss_pred cCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHH
Confidence 56677777777777777665 5677888899999999999999999998774444333221 1223466788888888
Q ss_pred HHHHHHHc------CCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHH-------HcCCCCchhHHHHHHHHHHhcCCHHH
Q 048321 332 LFFAMEAA------GELPDLVTVLSMISGCGQSGALELGKWFDNYAC-------SGGLKDNVMVCNALIDMYSKCGSIGD 398 (641)
Q Consensus 332 ~~~~m~~~------~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~~~~~~li~~~~~~g~~~~ 398 (641)
.+...... +..--..++..+...+...|-...+..+++..+ ......+...|-.+ .+
T Consensus 652 ~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~a----------sd 721 (1238)
T KOG1127|consen 652 ALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVA----------SD 721 (1238)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHH----------hH
Confidence 88776542 111111222222222222332333333333222 21111222222221 22
Q ss_pred HHHHHhhCCCCChh--HHHHHHHH-HHHcCCh---H---HHHHHHHHHHHcCCCCChhhHHHHHHHHhc-------c-CC
Q 048321 399 ARELFYALPEKIVV--SWTTMIAG-CALNGEF---V---EALDLFHQLMELDLRPNRVTFLAVLQACTH-------T-GF 461 (641)
Q Consensus 399 A~~~~~~~~~~~~~--~~~~li~~-~~~~g~~---~---~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-------~-g~ 461 (641)
|..+|.... |+.+ .+..++.. +-..+.. + -+.+.+-.-... ..+..+|..+...|.+ . .+
T Consensus 722 ac~~f~q~e-~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl--~~~~~~WyNLGinylr~f~~l~et~~~ 798 (1238)
T KOG1127|consen 722 ACYIFSQEE-PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSL--AIHMYPWYNLGINYLRYFLLLGETMKD 798 (1238)
T ss_pred HHHHHHHhc-ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHH--hhccchHHHHhHHHHHHHHHcCCcchh
Confidence 333444333 3311 11111111 1111111 1 111111111111 1223344433332222 1 23
Q ss_pred hHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHH
Q 048321 462 LEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVA 539 (641)
Q Consensus 462 ~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 539 (641)
...|...+...++... -+..+|+.|.-+ ...|.+.-|.-.|-+.. .+....+|..+...|....|++.|..++
T Consensus 799 ~~~Ai~c~KkaV~L~a----nn~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af 873 (1238)
T KOG1127|consen 799 ACTAIRCCKKAVSLCA----NNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAF 873 (1238)
T ss_pred HHHHHHHHHHHHHHhh----ccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHH
Confidence 3467777777775322 445566666554 66678887777665544 4446778999988899999999999999
Q ss_pred HHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHH
Q 048321 540 YCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTM 575 (641)
Q Consensus 540 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~ 575 (641)
.++..++|.|...|...+-+.-..|+.-++..++..
T Consensus 874 ~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 874 SSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred HhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 999999999999998888888888988888887765
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.6e-07 Score=78.33 Aligned_cols=92 Identities=7% Similarity=-0.110 Sum_probs=67.4
Q ss_pred HHHHHHHhhccCChHHHHHHHHhCC-CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcC
Q 048321 487 YSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGG 564 (641)
Q Consensus 487 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 564 (641)
+..+...+...|++++|...|+... ..| +...|..+...|...|++++|+..++++++++|+++..+..++.+|...|
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 4456667777777777777777755 333 56677777777777777777777777777777777777777777777777
Q ss_pred CchHHHHHHHHHHh
Q 048321 565 RWDGVANIRTMMKR 578 (641)
Q Consensus 565 ~~~eA~~~~~~m~~ 578 (641)
++++|.+.++....
T Consensus 107 ~~~eAi~~~~~Al~ 120 (144)
T PRK15359 107 EPGLAREAFQTAIK 120 (144)
T ss_pred CHHHHHHHHHHHHH
Confidence 77777777777655
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=6.5e-07 Score=80.31 Aligned_cols=147 Identities=7% Similarity=0.069 Sum_probs=111.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhcc
Q 048321 418 IAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRK 497 (641)
Q Consensus 418 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 497 (641)
+..|...|+++.+....+.+.. |. ..+...++.+++...++...+..+ .+...|..+...|...
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~P----~~~~~w~~Lg~~~~~~ 86 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRANP----QNSEQWALLGEYYLWR 86 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHC
Confidence 3467777887776444322221 11 012235667777777887775544 6688899999999999
Q ss_pred CChHHHHHHHHhCC-CCC-ChhHHHHHHHHH-HHcCC--HHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHH
Q 048321 498 GKLKEALDFVQSMP-IKS-DAGIWGTLLCAC-KIHLN--IEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANI 572 (641)
Q Consensus 498 g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~-~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~ 572 (641)
|++++|...|++.. ..| +...+..+..++ ...|+ .++|.++++++++.+|+++.++..++..+...|++++|...
T Consensus 87 g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~ 166 (198)
T PRK10370 87 NDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIEL 166 (198)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999876 445 566777777764 66676 59999999999999999999999999999999999999999
Q ss_pred HHHHHhCC
Q 048321 573 RTMMKRNQ 580 (641)
Q Consensus 573 ~~~m~~~~ 580 (641)
++++.+..
T Consensus 167 ~~~aL~l~ 174 (198)
T PRK10370 167 WQKVLDLN 174 (198)
T ss_pred HHHHHhhC
Confidence 99988653
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.76 E-value=9e-07 Score=82.97 Aligned_cols=179 Identities=12% Similarity=0.028 Sum_probs=115.8
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-h---hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh----h
Q 048321 379 NVMVCNALIDMYSKCGSIGDARELFYALPE--KI-V---VSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRV----T 448 (641)
Q Consensus 379 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t 448 (641)
....+..+...+.+.|++++|...|+++.. |+ . .+|..+..++...|++++|+..++++.+. .|+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHH
Confidence 445666667777777888888777776654 21 1 35566677777777888888888877765 34332 2
Q ss_pred HHHHHHHHhcc--------CChHHHHHHHHHHHhhhCCCCCCCh-hHHHHHHHHhhccCChHHHHHHHHhCCCCCChhHH
Q 048321 449 FLAVLQACTHT--------GFLEKGWAISIIQYDDKGISYNPEL-DHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIW 519 (641)
Q Consensus 449 ~~~ll~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~ 519 (641)
+..+..++... |++++|.+.|+.+...+ |+. ..+..+.... ...... ....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~~~----~~~~~~-----------~~~~ 169 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-----PNSEYAPDAKKRMD----YLRNRL-----------AGKE 169 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-----CCChhHHHHHHHHH----HHHHHH-----------HHHH
Confidence 33333444443 56777777777776533 332 1222111110 000000 0011
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhHccCCCCC---ccHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 520 GTLLCACKIHLNIEIGEYVAYCLFKLEPHSA---APYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 520 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
..+...+...|+++.|+..++++++..|+++ ..+..++.+|...|++++|.+.++.+..+
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 2455668889999999999999999877654 68899999999999999999999888764
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1e-05 Score=82.73 Aligned_cols=354 Identities=11% Similarity=0.084 Sum_probs=202.3
Q ss_pred CChhHHHHHH--HHhHcCCChhHHHHHHhcccCCCCCchhHHHHHHHHhcCCCchHHHHHHHHHHHC-CC--------CC
Q 048321 174 ADVSVCNTWI--SSYAKCDDLKMAELVFCGIEERLRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYN-GF--------RL 242 (641)
Q Consensus 174 ~~~~~~~~ll--~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~--------~p 242 (641)
-|..+-.+++ +.|..-|++|.|.+-.+.+ .+...|..|.+.|.+..+.+-|.-.+-.|... |. .|
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~I----kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~ 799 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFI----KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNG 799 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHH----hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCC
Confidence 4667777777 4578889999998888777 45678999999999999999888887777542 11 12
Q ss_pred ChhhHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC-cchHHHHHHHHH
Q 048321 243 DVTTVVSLLSSFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGICDRT-RVSWTAMISGYA 321 (641)
Q Consensus 243 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~ 321 (641)
+ .+-..+.-.....|.+++|+.+|.+..+.. .|-..|-..|.+++|.++-+.-.+-. ..||..-..-+-
T Consensus 800 ~-e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Le 869 (1416)
T KOG3617|consen 800 E-EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLE 869 (1416)
T ss_pred c-chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHH
Confidence 2 222223333456789999999999887654 35566778899999988765432211 125666666666
Q ss_pred hCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 048321 322 QKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARE 401 (641)
Q Consensus 322 ~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 401 (641)
..++.+.|++.|++... |-...+ .++.- ++...+++.+. ..|...|......+-..|+++.|+.
T Consensus 870 ar~Di~~AleyyEK~~~----hafev~-rmL~e-----~p~~~e~Yv~~------~~d~~L~~WWgqYlES~GemdaAl~ 933 (1416)
T KOG3617|consen 870 ARRDIEAALEYYEKAGV----HAFEVF-RMLKE-----YPKQIEQYVRR------KRDESLYSWWGQYLESVGEMDAALS 933 (1416)
T ss_pred hhccHHHHHHHHHhcCC----hHHHHH-HHHHh-----ChHHHHHHHHh------ccchHHHHHHHHHHhcccchHHHHH
Confidence 78889999998876421 111111 11111 11111222222 2344556666666666777777777
Q ss_pred HHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCC-
Q 048321 402 LFYALPEKIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISY- 480 (641)
Q Consensus 402 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~- 480 (641)
++....+ |-+++...|-.|+.++|-++-++ .-|......+.+.|...|++.+|..+|.++..-.+ -+
T Consensus 934 ~Y~~A~D-----~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsn-AIR 1001 (1416)
T KOG3617|consen 934 FYSSAKD-----YFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSN-AIR 1001 (1416)
T ss_pred HHHHhhh-----hhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH-HHH
Confidence 7766543 55666666666777777665443 23445555666667777777777666655542100 00
Q ss_pred ---C--CChhHHHHHHHHhhccCChHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHH----------hHcc
Q 048321 481 ---N--PELDHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHLNIEIGEYVAYC----------LFKL 545 (641)
Q Consensus 481 ---~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~----------~~~~ 545 (641)
. -+-..+| +...++..+.-.|-.+|++.... ...-...|.+.|.+.+|+++.-+ +-.+
T Consensus 1002 lcKEnd~~d~L~n--lal~s~~~d~v~aArYyEe~g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DL 1074 (1416)
T KOG3617|consen 1002 LCKENDMKDRLAN--LALMSGGSDLVSAARYYEELGGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDL 1074 (1416)
T ss_pred HHHhcCHHHHHHH--HHhhcCchhHHHHHHHHHHcchh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhc
Confidence 0 0011111 11122333444555555554411 11222345566666666655322 1234
Q ss_pred CCC-CCccHHHHHHHHHhcCCchHHHHHHHHH
Q 048321 546 EPH-SAAPYVEMANKYALGGRWDGVANIRTMM 576 (641)
Q Consensus 546 ~p~-~~~~~~~l~~~~~~~g~~~eA~~~~~~m 576 (641)
+|+ ||.....-++.+....+|+.|..++-..
T Consensus 1075 d~~sDp~ll~RcadFF~~~~qyekAV~lL~~a 1106 (1416)
T KOG3617|consen 1075 DAGSDPKLLRRCADFFENNQQYEKAVNLLCLA 1106 (1416)
T ss_pred CCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 453 4555555556666666666666555443
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.9e-05 Score=72.79 Aligned_cols=315 Identities=10% Similarity=0.019 Sum_probs=171.0
Q ss_pred chhHHHHHHHHhcCCCchHHHHHHHHHHHCCCCCChhhHHHHH---HHhcCCCchHHHHHHHHHHHHhCCCCchhHH-HH
Q 048321 209 VVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVVSLL---SSFVCPEALVQGRLVHSHGIHYGFDLDVSVI-NT 284 (641)
Q Consensus 209 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll---~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~ 284 (641)
+.---.+-..+...|++..|+.-|...++ .|+..|..+. ..|...|+-..|..-+..+++. +||-..- -.
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve----~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQ 111 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVE----GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQ 111 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHc----CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHH
Confidence 33344566677778888888888877765 3344444433 3555666666666666666654 4443221 12
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHH
Q 048321 285 LISMYSKCGDIDSARVLFDGICDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELG 364 (641)
Q Consensus 285 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a 364 (641)
-...+.+.|.++.|..=|+.+.+.++. +|...+|.+-+....+ .......+..+...|+...+
T Consensus 112 Rg~vllK~Gele~A~~DF~~vl~~~~s-----------~~~~~eaqskl~~~~e------~~~l~~ql~s~~~~GD~~~a 174 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEADFDQVLQHEPS-----------NGLVLEAQSKLALIQE------HWVLVQQLKSASGSGDCQNA 174 (504)
T ss_pred hchhhhhcccHHHHHHHHHHHHhcCCC-----------cchhHHHHHHHHhHHH------HHHHHHHHHHHhcCCchhhH
Confidence 234456677777777766665333221 1111111111111000 01122334445567788888
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 048321 365 KWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELD 441 (641)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 441 (641)
+.....+++.. +.|...+..-..+|...|++..|+.-++...+ .+....--+-..+...|+.+.++...++.++.
T Consensus 175 i~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl- 252 (504)
T KOG0624|consen 175 IEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL- 252 (504)
T ss_pred HHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc-
Confidence 88888887754 66778888888889999999888876665543 55666666777778888888888888888774
Q ss_pred CCCChh-hHH---HHH---------HHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHH
Q 048321 442 LRPNRV-TFL---AVL---------QACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQ 508 (641)
Q Consensus 442 ~~p~~~-t~~---~ll---------~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 508 (641)
.||.- .|. .+- ......+.+.++.+-.+...+..+.........+..+-.++...|++-+|++...
T Consensus 253 -dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ 331 (504)
T KOG0624|consen 253 -DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCK 331 (504)
T ss_pred -CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHH
Confidence 67764 221 110 0112233444444444444422110000111222333344445555555555555
Q ss_pred hCC-CCCC-hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCC
Q 048321 509 SMP-IKSD-AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHS 549 (641)
Q Consensus 509 ~~~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 549 (641)
+.. ..|| +.++.--..+|.....++.|+.-++++.+.+|+|
T Consensus 332 evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn 374 (504)
T KOG0624|consen 332 EVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESN 374 (504)
T ss_pred HHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCccc
Confidence 543 3333 3344444555555555555555555555555554
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.7e-05 Score=78.18 Aligned_cols=191 Identities=10% Similarity=0.008 Sum_probs=97.6
Q ss_pred HHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCC-----Ch--hHHHHHHHHHHHc
Q 048321 352 ISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEK-----IV--VSWTTMIAGCALN 424 (641)
Q Consensus 352 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~--~~~~~li~~~~~~ 424 (641)
...+...|+++.|...++...+.. +.+...+..+...|...|++++|...+++.... +. ..|..+...+...
T Consensus 121 a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~ 199 (355)
T cd05804 121 AFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLER 199 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHC
Confidence 334455555666666665555543 334555566666666667777776666655431 11 2344566667777
Q ss_pred CChHHHHHHHHHHHHcCC-CCChhhH-H--HHHHHHhccCChHHHHHHHHHHHh---hhCCCCCCChhHHHHHHHHhhcc
Q 048321 425 GEFVEALDLFHQLMELDL-RPNRVTF-L--AVLQACTHTGFLEKGWAISIIQYD---DKGISYNPELDHYSCMADLLGRK 497 (641)
Q Consensus 425 g~~~~A~~~~~~m~~~g~-~p~~~t~-~--~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~p~~~~~~~l~~~~~~~ 497 (641)
|++++|+.++++...... .+..... + .++.-+...|..+.+.+. +.+.. .... ...........+.++...
T Consensus 200 G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~~-~~~~~~~~~~~a~~~~~~ 277 (355)
T cd05804 200 GDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHFP-DHGLAFNDLHAALALAGA 277 (355)
T ss_pred CCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhcC-cccchHHHHHHHHHHhcC
Confidence 777777777777654321 1111111 1 222233333433333222 11111 1100 001111112455667777
Q ss_pred CChHHHHHHHHhCC--CCC---C------hhHHHHHHHHHHHcCCHHHHHHHHHHhHcc
Q 048321 498 GKLKEALDFVQSMP--IKS---D------AGIWGTLLCACKIHLNIEIGEYVAYCLFKL 545 (641)
Q Consensus 498 g~~~~A~~~~~~~~--~~p---~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 545 (641)
|+.++|..+++.+. ... . .........++...|+.+.|.+.+..++.+
T Consensus 278 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 278 GDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred CCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88888888887764 111 1 111222233456788999999888887764
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.7e-07 Score=78.27 Aligned_cols=123 Identities=12% Similarity=-0.056 Sum_probs=100.8
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC
Q 048321 432 DLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP 511 (641)
Q Consensus 432 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 511 (641)
.+|++..+. .|+. +.....++...|++++|...|+.+....+ .+...|..+..++.+.|++++|+..|+...
T Consensus 14 ~~~~~al~~--~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P----~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al 85 (144)
T PRK15359 14 DILKQLLSV--DPET--VYASGYASWQEGDYSRAVIDFSWLVMAQP----WSWRAHIALAGTWMMLKEYTTAINFYGHAL 85 (144)
T ss_pred HHHHHHHHc--CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCC----CcHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 456666654 5654 44566678889999999999999886333 467888999999999999999999999976
Q ss_pred --CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHh
Q 048321 512 --IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYAL 562 (641)
Q Consensus 512 --~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 562 (641)
.+.++..|..+..++...|+.++|+..+++++++.|+++..+...+++...
T Consensus 86 ~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 86 MLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred hcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 444677899999999999999999999999999999999999888876544
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=0.00011 Score=83.88 Aligned_cols=257 Identities=12% Similarity=-0.009 Sum_probs=123.2
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHhcCcCchHHHHHHHHHHHHc----CC-CCchhHHHHHHHHH
Q 048321 320 YAQKGDLDEALRLFFAMEAAGELPDL----VTVLSMISGCGQSGALELGKWFDNYACSG----GL-KDNVMVCNALIDMY 390 (641)
Q Consensus 320 ~~~~g~~~~A~~~~~~m~~~~~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~ 390 (641)
+...|++++|...+++....-...+. .....+...+...|+++.|...+...... |. .....+...+...+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 33455555555555554432111111 12222333344555666665555554431 10 01112333444555
Q ss_pred HhcCCHHHHHHHHhhCCC-------C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHc--CCCCC--hhhHHHHHHH
Q 048321 391 SKCGSIGDARELFYALPE-------K----IVVSWTTMIAGCALNGEFVEALDLFHQLMEL--DLRPN--RVTFLAVLQA 455 (641)
Q Consensus 391 ~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~--~~t~~~ll~~ 455 (641)
...|++++|...+++... + ....+..+...+...|++++|...+++.... ...+. ...+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 566666666665544322 0 1122333444455567777777666665442 11121 1123333445
Q ss_pred HhccCChHHHHHHHHHHHhhhCCCCCCChhHH-----HHHHHHhhccCChHHHHHHHHhCCCC--CChh----HHHHHHH
Q 048321 456 CTHTGFLEKGWAISIIQYDDKGISYNPELDHY-----SCMADLLGRKGKLKEALDFVQSMPIK--SDAG----IWGTLLC 524 (641)
Q Consensus 456 ~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~--p~~~----~~~~ll~ 524 (641)
....|+.++|.+.+........ .......+ ...+..+...|+.+.|...+...... .... .+..+..
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~ 699 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLG--NGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIAR 699 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHh--cccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHH
Confidence 5566777777776666653211 11110111 01123334567777777776654411 1111 1234455
Q ss_pred HHHHcCCHHHHHHHHHHhHccCC------CCCccHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048321 525 ACKIHLNIEIGEYVAYCLFKLEP------HSAAPYVEMANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 525 ~~~~~g~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
++...|+.++|...+++++.... .....+..++.+|.+.|+.++|.+.+.+..+
T Consensus 700 ~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 700 AQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56667777777777776665421 1123455667777777777777777766654
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.68 E-value=0.00012 Score=66.26 Aligned_cols=165 Identities=6% Similarity=-0.050 Sum_probs=90.7
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHH-HHHHHhccCChhHHHHHHHHHHHHcCCCChhHHHHHH
Q 048321 105 DVASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMG-LTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWI 183 (641)
Q Consensus 105 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 183 (641)
+....+.+-.+|-...++..|-+.|+++-.. .|...-|.. -...+.+.+.+..|..+...|... |+...-..-+
T Consensus 43 ~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqL 117 (459)
T KOG4340|consen 43 SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQL 117 (459)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHH
Confidence 4445555666666666666666666666542 444443322 123344455556666665555431 1111111111
Q ss_pred HH--hHcCCChhHHHHHHhcccCCCCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCchH
Q 048321 184 SS--YAKCDDLKMAELVFCGIEERLRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVVSLLSSFVCPEALV 261 (641)
Q Consensus 184 ~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 261 (641)
.+ .-..+++..+..+.++.+.. .+..+.+.......+.|++++|++-|+...+-|---....|+..+..| +.+++.
T Consensus 118 qaAIkYse~Dl~g~rsLveQlp~e-n~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qya 195 (459)
T KOG4340|consen 118 QAAIKYSEGDLPGSRSLVEQLPSE-NEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYA 195 (459)
T ss_pred HHHHhcccccCcchHHHHHhccCC-CccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHH
Confidence 11 22356777777777777631 344444445555567777777777777776653323345566555444 556777
Q ss_pred HHHHHHHHHHHhCCC
Q 048321 262 QGRLVHSHGIHYGFD 276 (641)
Q Consensus 262 ~a~~~~~~~~~~g~~ 276 (641)
.|.....+++.+|+.
T Consensus 196 sALk~iSEIieRG~r 210 (459)
T KOG4340|consen 196 SALKHISEIIERGIR 210 (459)
T ss_pred HHHHHHHHHHHhhhh
Confidence 777777777776653
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.5e-05 Score=71.09 Aligned_cols=303 Identities=9% Similarity=0.002 Sum_probs=167.4
Q ss_pred HHHHHhHcCCChhHHHHHHhcccCCCCCchhHHHHH---HHHhcCCCchHHHHHHHHHHHCCCCCChhhHH-HHHHHhcC
Q 048321 181 TWISSYAKCDDLKMAELVFCGIEERLRTVVSWNSMV---AGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVV-SLLSSFVC 256 (641)
Q Consensus 181 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~~~ 256 (641)
-|.+.+...|++.+|+.-|....+ .|+..|.++- ..|...|+..-|+.-+....+ ++||-..-. .-...+.+
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve--~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK 118 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVE--GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHc--CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhh
Confidence 344555556667777777766666 5555555543 456667777777766666655 345533221 11233456
Q ss_pred CCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHH
Q 048321 257 PEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGICDRTRVSWTAMISGYAQKGDLDEALRLFFAM 336 (641)
Q Consensus 257 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 336 (641)
.|.++.|..-|+.++++....+. ...++.+.-..++-+. ....+..+...|+...|++....+
T Consensus 119 ~Gele~A~~DF~~vl~~~~s~~~-----~~eaqskl~~~~e~~~------------l~~ql~s~~~~GD~~~ai~~i~~l 181 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQHEPSNGL-----VLEAQSKLALIQEHWV------------LVQQLKSASGSGDCQNAIEMITHL 181 (504)
T ss_pred cccHHHHHHHHHHHHhcCCCcch-----hHHHHHHHHhHHHHHH------------HHHHHHHHhcCCchhhHHHHHHHH
Confidence 67777777777777665421110 0111111111111111 112233344455555555555555
Q ss_pred HHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChh--
Q 048321 337 EAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE--KIVV-- 412 (641)
Q Consensus 337 ~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~-- 412 (641)
++.. .-|...+..-..+|...|.+..|+.=+....+.. ..+....--+-..+...|+.+.++...++..+ ||-.
T Consensus 182 lEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~C 259 (504)
T KOG0624|consen 182 LEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLC 259 (504)
T ss_pred HhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhH
Confidence 5431 2233333333444555555555544444443332 22333333344455555666666655555544 2211
Q ss_pred --HHHHH---------HHHHHHcCChHHHHHHHHHHHHcCCCCChhhH---HHHHHHHhccCChHHHHHHHHHHHhhhCC
Q 048321 413 --SWTTM---------IAGCALNGEFVEALDLFHQLMELDLRPNRVTF---LAVLQACTHTGFLEKGWAISIIQYDDKGI 478 (641)
Q Consensus 413 --~~~~l---------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~---~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 478 (641)
.|-.+ +......++|.++++..+...+.......+++ ..+-.++...|.+.+|++...+..+
T Consensus 260 f~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~---- 335 (504)
T KOG0624|consen 260 FPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD---- 335 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh----
Confidence 11111 22345678899999999888876322123333 3444566778999999999998885
Q ss_pred CCCCC-hhHHHHHHHHhhccCChHHHHHHHHhCC
Q 048321 479 SYNPE-LDHYSCMADLLGRKGKLKEALDFVQSMP 511 (641)
Q Consensus 479 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 511 (641)
+.|+ +.++.--.++|.-...+++|+.-|+...
T Consensus 336 -~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~ 368 (504)
T KOG0624|consen 336 -IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKAL 368 (504)
T ss_pred -cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 4565 8888888899999999999999999876
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.7e-05 Score=77.81 Aligned_cols=429 Identities=12% Similarity=0.025 Sum_probs=215.3
Q ss_pred cCCCChhHHHHHhhcc---CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCh-hhHHHHHHHHhccCChhHHH
Q 048321 86 VKCDRLDCAYKIFDEM---AVRDVASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADF-VTVMGLTQAAIHAKHLSLLK 161 (641)
Q Consensus 86 ~~~~~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~ 161 (641)
...|+++.|..+|-+. .++|.+.|..-..+|+..|++++|++=-.+-++ +.|+- -.|+-.-.++.-.|++++|.
T Consensus 13 ~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~eA~ 90 (539)
T KOG0548|consen 13 FSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYEEAI 90 (539)
T ss_pred cccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHHHHH
Confidence 5568888998888763 356888888888889999998888876666655 45653 35777888888888888888
Q ss_pred HHHHHHHHHcCCCChhHHHHHHHHhHcCCChhHHHHHHhc------ccCC-----CCCchhHHHHHHHHhcCCCchHHHH
Q 048321 162 SVHSFGIHIGVDADVSVCNTWISSYAKCDDLKMAELVFCG------IEER-----LRTVVSWNSMVAGCTYGDKFDDSLN 230 (641)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~------~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~ 230 (641)
.-|..-++.. +.+...++.|.+++... ..+.+.|.. +... ......|..++..+-++.. .+
T Consensus 91 ~ay~~GL~~d-~~n~~L~~gl~~a~~~~---~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~---~l- 162 (539)
T KOG0548|consen 91 LAYSEGLEKD-PSNKQLKTGLAQAYLED---YAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPT---SL- 162 (539)
T ss_pred HHHHHHhhcC-CchHHHHHhHHHhhhHH---HHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcH---hh-
Confidence 8888777643 33556777777776111 011111110 0000 0001122222222211100 00
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHhcCCCchHHHHHHHHHHHHhC-------CCCchhHHHHHHHHHHhcCC-HHHHHHHH
Q 048321 231 FYRHMMYNGFRLDVTTVVSLLSSFVCPEALVQGRLVHSHGIHYG-------FDLDVSVINTLISMYSKCGD-IDSARVLF 302 (641)
Q Consensus 231 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-------~~~~~~~~~~li~~~~~~g~-~~~A~~~~ 302 (641)
+...+ ...++.+.......+.- .....| ..|.. ......-..++ .++....
T Consensus 163 --------~~~l~---d~r~m~a~~~l~~~~~~-----~~~~~~~~~~~~~~~p~~----~~~~~~~~~~d~~ee~~~k- 221 (539)
T KOG0548|consen 163 --------KLYLN---DPRLMKADGQLKGVDEL-----LFYASGIEILASMAEPCK----QEHNGFPIIEDNTEERRVK- 221 (539)
T ss_pred --------hcccc---cHHHHHHHHHHhcCccc-----cccccccccCCCCCCccc----ccCCCCCccchhHHHHHHH-
Confidence 00000 00011110000000000 000000 00100 00000000000 0000000
Q ss_pred hcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCC--c-
Q 048321 303 DGICDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKD--N- 379 (641)
Q Consensus 303 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~- 379 (641)
.-..-...+..+.-+..++..|++.+....+.. -+..-++..-.++...|.+..+...-...++.|... +
T Consensus 222 -----~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~ 294 (539)
T KOG0548|consen 222 -----EKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADY 294 (539)
T ss_pred -----HhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHH
Confidence 000112233444444444555555554444432 122222223333444444444443333333332110 0
Q ss_pred ---hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh-hHHHHHHH
Q 048321 380 ---VMVCNALIDMYSKCGSIGDARELFYALPEKIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRV-TFLAVLQA 455 (641)
Q Consensus 380 ---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~ 455 (641)
......+..+|.+.++++.|...|.+...+-.. -....+....++++...+...-. .|... -...=...
T Consensus 295 klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne 367 (539)
T KOG0548|consen 295 KLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNE 367 (539)
T ss_pred HHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHH
Confidence 001111333566667777888777774431100 01122233445555555444432 34432 22222456
Q ss_pred HhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCCC-hhHHHHHHHHHHHcCCHH
Q 048321 456 CTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKSD-AGIWGTLLCACKIHLNIE 533 (641)
Q Consensus 456 ~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~ll~~~~~~g~~~ 533 (641)
+.+.|++..|...|.+++...+ -|...|..-.-+|.+.|.+.+|+.=.+... ..|+ ...|..-..++....+++
T Consensus 368 ~Fk~gdy~~Av~~YteAIkr~P----~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~yd 443 (539)
T KOG0548|consen 368 AFKKGDYPEAVKHYTEAIKRDP----EDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYD 443 (539)
T ss_pred HHhccCHHHHHHHHHHHHhcCC----chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHH
Confidence 6778888888888888885433 557788888888888888888887665544 3443 446666666777778899
Q ss_pred HHHHHHHHhHccCCCCCccHHHHHHHHHhc
Q 048321 534 IGEYVAYCLFKLEPHSAAPYVEMANKYALG 563 (641)
Q Consensus 534 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 563 (641)
.|.+.+++.++.+|++......+.+++...
T Consensus 444 kAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 444 KALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 999999999999998877777777777654
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=0.0001 Score=84.26 Aligned_cols=87 Identities=16% Similarity=0.169 Sum_probs=48.9
Q ss_pred HHHhcCCHHHHHHHHhhCCCCCh-------hHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCCCh-hhHHHHHHHH
Q 048321 389 MYSKCGSIGDARELFYALPEKIV-------VSWTTMIAGCALNGEFVEALDLFHQLMEL----DLRPNR-VTFLAVLQAC 456 (641)
Q Consensus 389 ~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~-~t~~~ll~~~ 456 (641)
.+...|+.+.|...+.....+.. ..+..+..++...|++++|..++++.... |..++. .+...+..++
T Consensus 662 ~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~ 741 (903)
T PRK04841 662 YWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLY 741 (903)
T ss_pred HHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 34446666666666655443211 11334555666677777777777766542 222222 2444455566
Q ss_pred hccCChHHHHHHHHHHHhh
Q 048321 457 THTGFLEKGWAISIIQYDD 475 (641)
Q Consensus 457 ~~~g~~~~a~~~~~~~~~~ 475 (641)
...|+.++|...+.++.+.
T Consensus 742 ~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 742 WQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 7777777777777777643
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.62 E-value=9.8e-06 Score=78.19 Aligned_cols=210 Identities=9% Similarity=-0.004 Sum_probs=127.5
Q ss_pred chHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC-CHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCCh--HHHHHH
Q 048321 360 ALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCG-SIGDARELFYALPE---KIVVSWTTMIAGCALNGEF--VEALDL 433 (641)
Q Consensus 360 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~--~~A~~~ 433 (641)
..++|....+.+++.. +-+..+|+..-.++.+.| ++++++..++.+.+ ++..+|+...-.+.+.|+. ++++.+
T Consensus 52 ~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~ 130 (320)
T PLN02789 52 RSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEF 130 (320)
T ss_pred CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHH
Confidence 3344444444444432 223334443333444444 45666666655543 3344555444444444542 566777
Q ss_pred HHHHHHcCCCC-ChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhcc---CC----hHHHHH
Q 048321 434 FHQLMELDLRP-NRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRK---GK----LKEALD 505 (641)
Q Consensus 434 ~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~----~~~A~~ 505 (641)
++++.+. .| |..+|.....++.+.|+++++++.++.+++... -+...|+....++.+. |. .+++++
T Consensus 131 ~~kal~~--dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~----~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~ 204 (320)
T PLN02789 131 TRKILSL--DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV----RNNSAWNQRYFVITRSPLLGGLEAMRDSELK 204 (320)
T ss_pred HHHHHHh--CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC----CchhHHHHHHHHHHhccccccccccHHHHHH
Confidence 7777765 34 344777766777777778888888888775433 3445555555554443 22 245667
Q ss_pred HHHhCC-CCC-ChhHHHHHHHHHHHc----CCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcC---------------
Q 048321 506 FVQSMP-IKS-DAGIWGTLLCACKIH----LNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGG--------------- 564 (641)
Q Consensus 506 ~~~~~~-~~p-~~~~~~~ll~~~~~~----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g--------------- 564 (641)
+..++. ..| |...|+.+...+... ++..+|...+.+++..+|+++.++..|+++|+...
T Consensus 205 y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~ 284 (320)
T PLN02789 205 YTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAE 284 (320)
T ss_pred HHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhcccc
Confidence 665543 444 677899888888773 34567888899999999998889999999998743
Q ss_pred ---CchHHHHHHHHH
Q 048321 565 ---RWDGVANIRTMM 576 (641)
Q Consensus 565 ---~~~eA~~~~~~m 576 (641)
..++|.++.+.+
T Consensus 285 ~~~~~~~a~~~~~~l 299 (320)
T PLN02789 285 ELSDSTLAQAVCSEL 299 (320)
T ss_pred ccccHHHHHHHHHHH
Confidence 235677777666
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.3e-06 Score=91.21 Aligned_cols=199 Identities=10% Similarity=0.050 Sum_probs=156.0
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCC--------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh-h
Q 048321 377 KDNVMVCNALIDMYSKCGSIGDARELFYALPEK--------IVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNR-V 447 (641)
Q Consensus 377 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~ 447 (641)
+-+...|-..+......+++++|++++++.... -.-.|.++++.....|.-+...++|+++.+. -|. .
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy---cd~~~ 1531 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY---CDAYT 1531 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh---cchHH
Confidence 444567777777788888888888888887651 2357888888777788878888899988874 233 4
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCCC---hhHHHHHH
Q 048321 448 TFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKSD---AGIWGTLL 523 (641)
Q Consensus 448 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~---~~~~~~ll 523 (641)
.|..|+..|.+.+.+++|.++++.|.++++ -....|..+++.+.+..+-+.|..++.++. .-|. .....-.+
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~----q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfA 1607 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFG----QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFA 1607 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHhc----chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHH
Confidence 778888888899999999999999988776 667788888899988888888888888754 2232 33444555
Q ss_pred HHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 048321 524 CACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRNQVK 582 (641)
Q Consensus 524 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~~~~ 582 (641)
..-.++||.++|..+|+.++.-.|.....|..+++.=.+.|..+.++.+|+.....++.
T Consensus 1608 qLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1608 QLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred HHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 56678899999999999999888988888999999888899999999999888876653
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.3e-06 Score=76.27 Aligned_cols=125 Identities=12% Similarity=0.060 Sum_probs=72.7
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHH
Q 048321 450 LAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACK 527 (641)
Q Consensus 450 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~ 527 (641)
..+-.++...|+-+....+.......++ .+......++....+.|++.+|+..|++.. .++|...|+.+..+|-
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~----~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaald 145 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYP----KDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALD 145 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCc----ccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHH
Confidence 3334455555555555555544432222 334444456666666666666666666654 4445666666666666
Q ss_pred HcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048321 528 IHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 528 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
+.|+.+.|...+.+++++.|+++..+..++-.|.-.|++++|..++.....
T Consensus 146 q~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l 196 (257)
T COG5010 146 QLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYL 196 (257)
T ss_pred HccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHh
Confidence 666666666666666666666666666666666666666666666655544
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=7.8e-07 Score=73.86 Aligned_cols=119 Identities=11% Similarity=-0.010 Sum_probs=99.6
Q ss_pred CChhHHHHHHHHhhccCChHHHHHHHHhCC-CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHH
Q 048321 482 PELDHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANK 559 (641)
Q Consensus 482 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 559 (641)
-+.+..-.+...+...|++++|..+|+-.. ..| +..-|..|...|...|++++|+..+.++..++|++|.++..++.+
T Consensus 33 ~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c 112 (157)
T PRK15363 33 QPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 345566677788889999999999999876 455 677899999999999999999999999999999999999999999
Q ss_pred HHhcCCchHHHHHHHHHHhCCCccCCceeEEEECCEEEEEeeCCCCCCChhcHHHHHHHHHHHH
Q 048321 560 YALGGRWDGVANIRTMMKRNQVKKFPGQSLFHINGKTCTFTAEDRYHAESELTYPVLDCLALHS 623 (641)
Q Consensus 560 ~~~~g~~~eA~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 623 (641)
|...|+.++|++-|+...... + .+|+...+...-+.+...+
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~~---------------------~--~~~~~~~l~~~A~~~L~~l 153 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRIC---------------------G--EVSEHQILRQRAEKMLQQL 153 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHHh---------------------c--cChhHHHHHHHHHHHHHHh
Confidence 999999999999999877532 1 3677777776665555544
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.57 E-value=6.2e-06 Score=81.44 Aligned_cols=215 Identities=14% Similarity=0.069 Sum_probs=160.7
Q ss_pred cCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC---CCCCcchHHHHHHHHHhCCChhHHHH
Q 048321 255 VCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGI---CDRTRVSWTAMISGYAQKGDLDEALR 331 (641)
Q Consensus 255 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~ 331 (641)
.+.|++.+|.-.|+..++.. +-+...|.-|...-..+++-..|+..+.+. .+.|....-+|.-.|...|.-..|+.
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 46777888888888888776 567788888888888888888888888776 33455677777888999999999999
Q ss_pred HHHHHHHcCCC--------CCHHHHHHHHHHhcCcCchHHHHHHHHHHH-HcCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 048321 332 LFFAMEAAGEL--------PDLVTVLSMISGCGQSGALELGKWFDNYAC-SGGLKDNVMVCNALIDMYSKCGSIGDAREL 402 (641)
Q Consensus 332 ~~~~m~~~~~~--------p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 402 (641)
.|+.-+....+ ++..+-.. ........+....++|-.+. ..+..+|+.++..|.-.|--.|++++|.+.
T Consensus 375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 375 MLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 99888654311 00000000 11222223444444544444 455558888999999999999999999999
Q ss_pred HhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh-hHHHHHHHHhccCChHHHHHHHHHHHh
Q 048321 403 FYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRV-TFLAVLQACTHTGFLEKGWAISIIQYD 474 (641)
Q Consensus 403 ~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~ 474 (641)
|+.... .|...||.|...++...+.++|+..|++.++. +|+-+ ....|.-+|...|.+++|...|-.++.
T Consensus 453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 998765 47789999999999999999999999999985 88876 444556678999999999998887764
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.56 E-value=8.5e-08 Score=57.64 Aligned_cols=33 Identities=30% Similarity=0.435 Sum_probs=26.0
Q ss_pred cCCCChhHHHHHHHHhHcCCChhHHHHHHhccc
Q 048321 171 GVDADVSVCNTWISSYAKCDDLKMAELVFCGIE 203 (641)
Q Consensus 171 ~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 203 (641)
|+.||..+||+||++||+.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677888888888888888888888888887774
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.3e-07 Score=56.80 Aligned_cols=33 Identities=39% Similarity=0.637 Sum_probs=25.2
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 048321 375 GLKDNVMVCNALIDMYSKCGSIGDARELFYALP 407 (641)
Q Consensus 375 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 407 (641)
|+.||..+|++||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 667777777777777777777777777777764
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.55 E-value=0.0012 Score=65.09 Aligned_cols=447 Identities=11% Similarity=0.091 Sum_probs=247.7
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-hhhHHHHHHHHhccCChhHHHHHHHHHHHHcCCCChhHHHHH
Q 048321 104 RDVASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQAD-FVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTW 182 (641)
Q Consensus 104 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 182 (641)
-|+.+|+.||+-+... .++++.+.+++|.. +.|. ...|..-+..-...++++..+.+|.+.+..-+. ...|..-
T Consensus 18 ~di~sw~~lire~qt~-~~~~~R~~YEq~~~--~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn--lDLW~lY 92 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQ-PIDKVRETYEQLVN--VFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN--LDLWKLY 92 (656)
T ss_pred ccHHHHHHHHHHHccC-CHHHHHHHHHHHhc--cCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh--HhHHHHH
Confidence 3889999999976555 99999999999986 3454 456788888888999999999999999876544 5556555
Q ss_pred HHHhHc-CCChhHH----HHHHhcccCC----CCCchhHHHHHHH---------HhcCCCchHHHHHHHHHHHCCCCC--
Q 048321 183 ISSYAK-CDDLKMA----ELVFCGIEER----LRTVVSWNSMVAG---------CTYGDKFDDSLNFYRHMMYNGFRL-- 242 (641)
Q Consensus 183 l~~~~~-~g~~~~A----~~~~~~~~~~----~~~~~~~~~li~~---------~~~~g~~~~A~~~~~~m~~~g~~p-- 242 (641)
++---+ .|+...+ .+.|+-.... ..+-..|+..|.- |..+.+++...++|+++...-+.-
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 543322 2333332 2222222211 2344456665543 233345555666666665421100
Q ss_pred ----ChhhHHHHHHHh-------cCCCchHHHHHHHHHHHH--hCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC
Q 048321 243 ----DVTTVVSLLSSF-------VCPEALVQGRLVHSHGIH--YGFDLDVSVINTLISMYSKCGDIDSARVLFDGICDRT 309 (641)
Q Consensus 243 ----~~~t~~~ll~~~-------~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 309 (641)
|-.+|..-|+.. -+...+..|.++++++.. .|+.....+ .-..|--++..+
T Consensus 173 kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~-------vp~~~T~~e~~q--------- 236 (656)
T KOG1914|consen 173 KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPA-------VPPKGTKDEIQQ--------- 236 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCC-------CCCCCChHHHHH---------
Confidence 001111111100 011223333333333321 111100000 000000000000
Q ss_pred cchHHHHHHHHHhCCCh--------hHHHHHHHH-HHHcCCCCCHHH-HHHHHH----HhcCcCc-------hHHHHHHH
Q 048321 310 RVSWTAMISGYAQKGDL--------DEALRLFFA-MEAAGELPDLVT-VLSMIS----GCGQSGA-------LELGKWFD 368 (641)
Q Consensus 310 ~~~~~~li~~~~~~g~~--------~~A~~~~~~-m~~~~~~p~~~t-~~~ll~----~~~~~~~-------~~~a~~~~ 368 (641)
+..|-.+|.--..++-- ....=.+++ |.-.+..|+..- +...+. .+...|+ .+++..++
T Consensus 237 v~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~y 316 (656)
T KOG1914|consen 237 VELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIY 316 (656)
T ss_pred HHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHH
Confidence 00132233221111100 001111111 111223333211 111111 1122222 35566666
Q ss_pred HHHHHcCCCCchhHHHHHHHHHHhcC---CHHHHHHHHhhCCC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 048321 369 NYACSGGLKDNVMVCNALIDMYSKCG---SIGDARELFYALPE----KIVVSWTTMIAGCALNGEFVEALDLFHQLMELD 441 (641)
Q Consensus 369 ~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 441 (641)
+..+..-...+..+|..+.+---..- ..+.....+++... .-..+|-..++.-.+..-...|..+|.++.+.+
T Consensus 317 Er~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~ 396 (656)
T KOG1914|consen 317 ERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDK 396 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhcc
Confidence 66655433344445554443221111 13334444444433 233578888888778888899999999999988
Q ss_pred CCC-ChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC---CCCC--
Q 048321 442 LRP-NRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP---IKSD-- 515 (641)
Q Consensus 442 ~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p~-- 515 (641)
..+ +....++++.-+| +++.+-|.++|+.-.+.+| .+...-.+.++-+.+.++-..|..+|++.. ..|+
T Consensus 397 r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~----d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks 471 (656)
T KOG1914|consen 397 RTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFG----DSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKS 471 (656)
T ss_pred CCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcC----CChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhh
Confidence 888 4456777777555 4788999999999887776 666777899999999999999999999976 2343
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCC----CccHHHHHHHHHhcCCchHHHHHHHHH
Q 048321 516 AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHS----AAPYVEMANKYALGGRWDGVANIRTMM 576 (641)
Q Consensus 516 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~eA~~~~~~m 576 (641)
..+|..++..-..-||...+.++-++....-|.+ ...-..+.+-|.=.+.+..-..=++.|
T Consensus 472 ~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 472 KEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 4599999999999999999999988887766622 123445667777777766555444433
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.2e-05 Score=72.24 Aligned_cols=155 Identities=8% Similarity=0.072 Sum_probs=114.7
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHH
Q 048321 387 IDMYSKCGSIGDARELFYALPEKIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGW 466 (641)
Q Consensus 387 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 466 (641)
+-.|.+.|+++......+.+..+. ..+...++.++++..+++..+.. +.|...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 456778888777655543332221 01223567788888888888762 334457888888999999999999
Q ss_pred HHHHHHHhhhCCCCCCChhHHHHHHHHh-hccCC--hHHHHHHHHhCC-CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHH
Q 048321 467 AISIIQYDDKGISYNPELDHYSCMADLL-GRKGK--LKEALDFVQSMP-IKS-DAGIWGTLLCACKIHLNIEIGEYVAYC 541 (641)
Q Consensus 467 ~~~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~ 541 (641)
..|+...+..+ .+...+..+..++ .+.|+ .++|.+++++.. ..| +...+..+...+...|++++|+..+++
T Consensus 94 ~a~~~Al~l~P----~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 94 LAYRQALQLRG----ENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHhCC----CCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999986433 4577788888864 67777 599999999977 455 667888888899999999999999999
Q ss_pred hHccCCCCCccHH
Q 048321 542 LFKLEPHSAAPYV 554 (641)
Q Consensus 542 ~~~~~p~~~~~~~ 554 (641)
++++.|.+..-+.
T Consensus 170 aL~l~~~~~~r~~ 182 (198)
T PRK10370 170 VLDLNSPRVNRTQ 182 (198)
T ss_pred HHhhCCCCccHHH
Confidence 9999987654443
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=8.1e-06 Score=86.91 Aligned_cols=137 Identities=9% Similarity=0.015 Sum_probs=108.6
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh-hHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHH
Q 048321 410 IVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRV-TFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYS 488 (641)
Q Consensus 410 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~ 488 (641)
++..+-.|.....+.|+.++|..+++...+. .||.. ....+...+.+.+.+++|....++.....+ -+.....
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p----~~~~~~~ 158 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS----SSAREIL 158 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC----CCHHHHH
Confidence 4677888888888899999999999998885 78776 666677788889999999998888885322 3466777
Q ss_pred HHHHHhhccCChHHHHHHHHhCC-CCCC-hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCcc
Q 048321 489 CMADLLGRKGKLKEALDFVQSMP-IKSD-AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAP 552 (641)
Q Consensus 489 ~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 552 (641)
.+..++.+.|++++|.++|++.. ..|+ ..+|.++..++...|+.+.|...|+++++...+-...
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARK 224 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHH
Confidence 88888889999999999998876 4443 6688888888889999999999999988876543333
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.49 E-value=4.6e-06 Score=84.52 Aligned_cols=207 Identities=10% Similarity=-0.076 Sum_probs=130.0
Q ss_pred HhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhHHHHHHHHHHHcCChHHHH
Q 048321 354 GCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE--KIVVSWTTMIAGCALNGEFVEAL 431 (641)
Q Consensus 354 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~ 431 (641)
.+...|-...|..+++++. .+...|.+|+..|+..+|..+..+-.+ ||...|..+.+.....--+++|.
T Consensus 407 ll~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yEkaw 477 (777)
T KOG1128|consen 407 LLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYEKAW 477 (777)
T ss_pred HHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHHHHH
Confidence 3344444555555554432 334455555555555555555443332 34455555555444444455555
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC
Q 048321 432 DLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP 511 (641)
Q Consensus 432 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 511 (641)
++++.-... .-..+.....+.++++++.+.|+...+.++ ....+|-.+..+..+.++++.|.+.|....
T Consensus 478 Elsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~np----lq~~~wf~~G~~ALqlek~q~av~aF~rcv 546 (777)
T KOG1128|consen 478 ELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINP----LQLGTWFGLGCAALQLEKEQAAVKAFHRCV 546 (777)
T ss_pred HHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCc----cchhHHHhccHHHHHHhhhHHHHHHHHHHh
Confidence 555433221 001111111224666666666666654333 335677777788888889998888888765
Q ss_pred -CCCC-hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048321 512 -IKSD-AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRNQ 580 (641)
Q Consensus 512 -~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~~ 580 (641)
..|| ...|+.+-.+|.+.|+..+|...++++++-+-++...|.+..-+..+.|.|++|.+.+..+.+..
T Consensus 547 tL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 547 TLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred hcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 6665 55899999999999999999999999998887778888888888888999999999888876543
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.48 E-value=5.2e-06 Score=84.12 Aligned_cols=189 Identities=17% Similarity=0.172 Sum_probs=160.2
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 048321 375 GLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQ 454 (641)
Q Consensus 375 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 454 (641)
+++|-...-..+.+.+.++|-...|..+|++.. .|.-.|.+|+..|+..+|..+..+-.++ +||...|..+.+
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhh
Confidence 456666777888999999999999999999864 6888899999999999999999888874 889999999999
Q ss_pred HHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCC-ChhHHHHHHHHHHHcCCH
Q 048321 455 ACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHLNI 532 (641)
Q Consensus 455 ~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~ 532 (641)
......-+++|+++++....+.. ..+.....+.++++++.+.|+... ..| ...+|..+..+..+.+++
T Consensus 466 v~~d~s~yEkawElsn~~sarA~----------r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISARAQ----------RSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hccChHHHHHHHHHhhhhhHHHH----------HhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhh
Confidence 98888899999999887653311 112233345899999999998854 334 567999998888999999
Q ss_pred HHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048321 533 EIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRNQ 580 (641)
Q Consensus 533 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~~ 580 (641)
+.|.+.|.+.+.++|++.+.|..++..|.+.|+..+|...+++..+.+
T Consensus 536 q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 999999999999999999999999999999999999999999887765
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.1e-05 Score=72.02 Aligned_cols=156 Identities=12% Similarity=0.092 Sum_probs=110.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHh
Q 048321 415 TTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLL 494 (641)
Q Consensus 415 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~ 494 (641)
..+-..+...|+.+....+........ .-|............+.|++.+|...|.+..... ++|...|+.+.-+|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~----p~d~~~~~~lgaal 144 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA----PTDWEAWNLLGAAL 144 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC----CCChhhhhHHHHHH
Confidence 445556666677777776666654321 2233344446667777788888888777776533 36777788888888
Q ss_pred hccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHH
Q 048321 495 GRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANI 572 (641)
Q Consensus 495 ~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~ 572 (641)
.+.|++++|..-|.+.. ...++...+.+...+.-.|+.+.|+.++.++....+.++..-..++-+....|++++|.++
T Consensus 145 dq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 145 DQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred HHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 88888888877777755 3335667788888888888888888888888887777777888888888888888888877
Q ss_pred HHH
Q 048321 573 RTM 575 (641)
Q Consensus 573 ~~~ 575 (641)
...
T Consensus 225 ~~~ 227 (257)
T COG5010 225 AVQ 227 (257)
T ss_pred ccc
Confidence 543
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.48 E-value=6.5e-05 Score=73.17 Aligned_cols=112 Identities=13% Similarity=0.029 Sum_probs=56.5
Q ss_pred ccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCCC-hhHHHHHHHHHHHcCCHHHH
Q 048321 458 HTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKSD-AGIWGTLLCACKIHLNIEIG 535 (641)
Q Consensus 458 ~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~ll~~~~~~g~~~~a 535 (641)
..|.+++|+..++.+....+ -|+..+...++.+.+.++.++|.+.++++. ..|+ ...+-.+..++.+.|+..+|
T Consensus 318 ~~~~~d~A~~~l~~L~~~~P----~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 318 LAGQYDEALKLLQPLIAAQP----DNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HhcccchHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHH
Confidence 34555555555555543221 334444444555555555555555555544 3343 33444555555555555555
Q ss_pred HHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHH
Q 048321 536 EYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIR 573 (641)
Q Consensus 536 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~ 573 (641)
+..+++...-+|+++..|..|+..|...|+-.+|...+
T Consensus 394 i~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~ 431 (484)
T COG4783 394 IRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR 431 (484)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH
Confidence 55555555555555555555555555544444444433
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.7e-05 Score=75.73 Aligned_cols=145 Identities=19% Similarity=0.158 Sum_probs=119.3
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHH-HHhccCChHHHHHHHHHHHhhhCCCCCCC-hhHHHH
Q 048321 412 VSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQ-ACTHTGFLEKGWAISIIQYDDKGISYNPE-LDHYSC 489 (641)
Q Consensus 412 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~-~~~~~g~~~~a~~~~~~~~~~~~~~~~p~-~~~~~~ 489 (641)
..+--..-.+...|++++|+..++.+... .||...|..+.. .+...++.++|.+.++.+.. ..|+ ....-.
T Consensus 307 aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~-----l~P~~~~l~~~ 379 (484)
T COG4783 307 AAQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALA-----LDPNSPLLQLN 379 (484)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh-----cCCCccHHHHH
Confidence 34444444566789999999999999886 788887776655 88999999999999999996 4466 566677
Q ss_pred HHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCch
Q 048321 490 MADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWD 567 (641)
Q Consensus 490 l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 567 (641)
+..+|.+.|++.+|+.++++.. .+.|+..|..|..+|...|+..++... .++.|.-.|+|+
T Consensus 380 ~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~ 442 (484)
T COG4783 380 LAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLE 442 (484)
T ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHH
Confidence 8899999999999999999976 555888999999999999998776554 466788889999
Q ss_pred HHHHHHHHHHhCC
Q 048321 568 GVANIRTMMKRNQ 580 (641)
Q Consensus 568 eA~~~~~~m~~~~ 580 (641)
+|.......+++.
T Consensus 443 ~A~~~l~~A~~~~ 455 (484)
T COG4783 443 QAIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHHHhc
Confidence 9999988887753
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.8e-06 Score=72.96 Aligned_cols=96 Identities=19% Similarity=0.221 Sum_probs=80.1
Q ss_pred hhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHH
Q 048321 484 LDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYA 561 (641)
Q Consensus 484 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 561 (641)
......++..+...|++++|.+.++... .+.+...|..+...+...|+++.|...++++++.+|+++..+..++.+|.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 4556677788888888888888888865 33366778888888888899999999999999999998999999999999
Q ss_pred hcCCchHHHHHHHHHHhC
Q 048321 562 LGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 562 ~~g~~~eA~~~~~~m~~~ 579 (641)
..|++++|.+.++...+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 97 ALGEPESALKALDLAIEI 114 (135)
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999887764
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.00018 Score=64.41 Aligned_cols=175 Identities=12% Similarity=0.011 Sum_probs=108.1
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC
Q 048321 366 WFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPN 445 (641)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 445 (641)
.+.+.+.......+......-...|+..|++++|.+.......-+....+ +..+.+..+.+-|.+.+++|.+- -+
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~i---de 168 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQI---DE 168 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcc---ch
Confidence 33444444443444334444455677888888888888773332332222 33455667788888888888863 35
Q ss_pred hhhHHHHHHHHhc----cCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHH
Q 048321 446 RVTFLAVLQACTH----TGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIW 519 (641)
Q Consensus 446 ~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~ 519 (641)
..|.+.|..++.+ .+.+.+|.-+|+++.++++ |+..+.+-+..+....|++++|..++++.. ...++.+.
T Consensus 169 d~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~----~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL 244 (299)
T KOG3081|consen 169 DATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTP----PTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETL 244 (299)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccC----CChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHH
Confidence 5677666665533 3467777788888776555 777777777777777777777777777765 23345555
Q ss_pred HHHHHHHHHcC-CHHHHHHHHHHhHccCCCC
Q 048321 520 GTLLCACKIHL-NIEIGEYVAYCLFKLEPHS 549 (641)
Q Consensus 520 ~~ll~~~~~~g-~~~~a~~~~~~~~~~~p~~ 549 (641)
..++-.-...| +.+--.+...++....|.+
T Consensus 245 ~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h 275 (299)
T KOG3081|consen 245 ANLIVLALHLGKDAEVTERNLSQLKLSHPEH 275 (299)
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhcCCcc
Confidence 55555444445 4455556666666666664
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.3e-05 Score=75.13 Aligned_cols=182 Identities=12% Similarity=-0.048 Sum_probs=128.0
Q ss_pred CCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCc---hhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-hh---H
Q 048321 343 PDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDN---VMVCNALIDMYSKCGSIGDARELFYALPE--KI-VV---S 413 (641)
Q Consensus 343 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~---~ 413 (641)
.....+......+...|+++.|...++.+.... +.+ ..++..+..+|.+.|++++|...|+.+.+ |+ .. +
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 345667777888899999999999999998754 222 24667788999999999999999999865 22 22 4
Q ss_pred HHHHHHHHHHc--------CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChh
Q 048321 414 WTTMIAGCALN--------GEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELD 485 (641)
Q Consensus 414 ~~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~ 485 (641)
+..+..++... |++++|.+.|+++... .|+..-....+.... .+.... ..
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~-------------~~~~~~-------~~ 167 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMD-------------YLRNRL-------AG 167 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHH-------------HHHHHH-------HH
Confidence 55556666654 7889999999999986 566532221111110 000000 01
Q ss_pred HHHHHHHHhhccCChHHHHHHHHhCC-CCC----ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCC
Q 048321 486 HYSCMADLLGRKGKLKEALDFVQSMP-IKS----DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEP 547 (641)
Q Consensus 486 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 547 (641)
....+...|.+.|++++|+..+++.. ..| ....|..+..++...|++++|...++.+....|
T Consensus 168 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 168 KELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 12346677889999999999988865 222 245788889999999999999998888876655
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.1e-05 Score=74.78 Aligned_cols=186 Identities=10% Similarity=0.042 Sum_probs=138.8
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHHcC-ChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHhccCC
Q 048321 387 IDMYSKCGSIGDARELFYALPEK---IVVSWTTMIAGCALNG-EFVEALDLFHQLMELDLRPNR-VTFLAVLQACTHTGF 461 (641)
Q Consensus 387 i~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~ 461 (641)
-..+.+.++.++|+.+...+.+. +..+|+.-...+...| ++++++..++++.+. .|+. .+|..-...+.+.|.
T Consensus 44 ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--npknyqaW~~R~~~l~~l~~ 121 (320)
T PLN02789 44 RAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--NPKNYQIWHHRRWLAEKLGP 121 (320)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--CCcchHHhHHHHHHHHHcCc
Confidence 33445567788888888887652 4567777666777777 679999999999986 4544 356555444555565
Q ss_pred --hHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHc---CC---
Q 048321 462 --LEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIH---LN--- 531 (641)
Q Consensus 462 --~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~---g~--- 531 (641)
.+++..+++.+.+..+ -+...|+...-++.+.|++++|++.++++. ...|...|+.....+.+. |.
T Consensus 122 ~~~~~el~~~~kal~~dp----kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~ 197 (320)
T PLN02789 122 DAANKELEFTRKILSLDA----KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEA 197 (320)
T ss_pred hhhHHHHHHHHHHHHhCc----ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccc
Confidence 3677888888886433 457788888889999999999999999986 344677888887776554 22
Q ss_pred -HHHHHHHHHHhHccCCCCCccHHHHHHHHHh----cCCchHHHHHHHHHHh
Q 048321 532 -IEIGEYVAYCLFKLEPHSAAPYVEMANKYAL----GGRWDGVANIRTMMKR 578 (641)
Q Consensus 532 -~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~eA~~~~~~m~~ 578 (641)
.+..+....++++++|+|.++|..++.+|.. .++..+|.++..+...
T Consensus 198 ~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 198 MRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred cHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 3567788889999999999999999999988 3456778888777554
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.40 E-value=5.1e-05 Score=82.38 Aligned_cols=201 Identities=9% Similarity=0.089 Sum_probs=141.5
Q ss_pred CCH-HHHHHHHHHhcCcCchHHHHHHHHHHHH-cCCCC---chhHHHHHHHHHHhcCCHHHHHHHHhhCCC-C-ChhHHH
Q 048321 343 PDL-VTVLSMISGCGQSGALELGKWFDNYACS-GGLKD---NVMVCNALIDMYSKCGSIGDARELFYALPE-K-IVVSWT 415 (641)
Q Consensus 343 p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~-~~~~~~ 415 (641)
||+ ..|...|.-....++.+.|+.+.+++++ .++.- -..+|.+++++-..-|.-+...++|++..+ . ....|.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~ 1534 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHL 1534 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHH
Confidence 443 4555666666777788888888777765 22221 234677777777777777778888888776 2 345677
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhh
Q 048321 416 TMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLG 495 (641)
Q Consensus 416 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 495 (641)
.|...|.+.+.+++|.++|+.|.+. +.-....|...+..+.+...-+.|..++.++.+-.+ -.-.+....-.+.+-.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lP--k~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLP--KQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcc--hhhhHHHHHHHHHHHh
Confidence 8888888888888888888888875 344455777788888888888888888888775322 1112344455666777
Q ss_pred ccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccC
Q 048321 496 RKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLE 546 (641)
Q Consensus 496 ~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 546 (641)
+.|+.+++..+|+... .+.....|+.++..-.++|+.+.++.+|++++.+.
T Consensus 1612 k~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred hcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 8888888888888765 33456688888888888888888888888887653
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=7.4e-05 Score=79.72 Aligned_cols=143 Identities=13% Similarity=0.028 Sum_probs=117.9
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhH-HH
Q 048321 376 LKDNVMVCNALIDMYSKCGSIGDARELFYALPE--K-IVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTF-LA 451 (641)
Q Consensus 376 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ 451 (641)
...+...+..|.......|+.++|..+++...+ | +...+..++..+.+.+++++|+..+++.... .|+..+. ..
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHH
Confidence 466788899999999999999999999999876 4 5567888899999999999999999999986 7887754 44
Q ss_pred HHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHH
Q 048321 452 VLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLC 524 (641)
Q Consensus 452 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~ 524 (641)
+..++...|.+++|..+|+++.. .+ .-+...+..+..++-..|+.++|...|+... ..|....|+.++.
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~-~~---p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 230 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSR-QH---PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV 230 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHh-cC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH
Confidence 55588899999999999999995 32 2347889999999999999999999999975 4444445554443
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.33 E-value=9.3e-05 Score=65.65 Aligned_cols=168 Identities=14% Similarity=0.100 Sum_probs=123.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHH---HHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhc
Q 048321 382 VCNALIDMYSKCGSIGDARELFYALPEKIVVSWTTM---IAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTH 458 (641)
Q Consensus 382 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 458 (641)
+|..++-+...+|+.+.|...++.+..+-+.++... ..-+-..|++++|+++++...+.+ +.|.+++..=+...-.
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka 132 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKA 132 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHH
Confidence 344455556667888888888777654212222111 112445789999999999999875 4466677776767777
Q ss_pred cCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCC-ChhHHHHHHHHHHHcC---CHH
Q 048321 459 TGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHL---NIE 533 (641)
Q Consensus 459 ~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g---~~~ 533 (641)
.|+--+|++-+....+.+. .|.+.|.-+.+.|...|+++.|.-.++++. ..| ++..+..+...+...| +.+
T Consensus 133 ~GK~l~aIk~ln~YL~~F~----~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~ 208 (289)
T KOG3060|consen 133 QGKNLEAIKELNEYLDKFM----NDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLE 208 (289)
T ss_pred cCCcHHHHHHHHHHHHHhc----CcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHH
Confidence 7877788888887776644 899999999999999999999999999977 555 6667777777655444 788
Q ss_pred HHHHHHHHhHccCCCCCccHH
Q 048321 534 IGEYVAYCLFKLEPHSAAPYV 554 (641)
Q Consensus 534 ~a~~~~~~~~~~~p~~~~~~~ 554 (641)
.+.+.+.+++++.|.+...+.
T Consensus 209 ~arkyy~~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 209 LARKYYERALKLNPKNLRALF 229 (289)
T ss_pred HHHHHHHHHHHhChHhHHHHH
Confidence 999999999999996654433
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.30 E-value=9.2e-06 Score=79.90 Aligned_cols=123 Identities=12% Similarity=0.055 Sum_probs=102.8
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCC-ChhHHHHHHHH
Q 048321 448 TFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCA 525 (641)
Q Consensus 448 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~ 525 (641)
...+++..+...++++.|..+|+++.+ ..|+ ....++..+...++-.+|.+++++.. ..| +...+......
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~-----~~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~f 243 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRE-----RDPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEF 243 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHh-----cCCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 345566777778899999999999885 2354 45557788888888899999998876 334 56667777778
Q ss_pred HHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHH
Q 048321 526 CKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMK 577 (641)
Q Consensus 526 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~ 577 (641)
|...++++.|+.+++++.++.|++...|..|+.+|...|+|++|.-.++.++
T Consensus 244 Ll~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 244 LLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 8999999999999999999999999999999999999999999999998875
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.5e-06 Score=53.33 Aligned_cols=35 Identities=31% Similarity=0.585 Sum_probs=32.7
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCh
Q 048321 107 ASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADF 141 (641)
Q Consensus 107 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~ 141 (641)
++||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999984
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00026 Score=76.46 Aligned_cols=43 Identities=12% Similarity=0.076 Sum_probs=26.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHH
Q 048321 519 WGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYA 561 (641)
Q Consensus 519 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 561 (641)
+--+-..|...++++++..+++.+++.+|.|..+..-++.+|.
T Consensus 226 ~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 226 LEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 3334444555666677777777777777766666666666655
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00028 Score=63.22 Aligned_cols=169 Identities=12% Similarity=0.091 Sum_probs=115.5
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC-CC
Q 048321 332 LFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE-KI 410 (641)
Q Consensus 332 ~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~ 410 (641)
+.+.+.......+......-...|...++.+.|.+..... .+..+...=+..+.|..+++-|.+.++.|.+ .+
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ide 168 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG------ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDE 168 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccch
Confidence 4444444444444444444445578888888888776551 1223333335567788888999999998888 34
Q ss_pred hhHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhH
Q 048321 411 VVSWTTMIAGCAL----NGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDH 486 (641)
Q Consensus 411 ~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~ 486 (641)
-.+.+.|..++.+ .+...+|.-+|++|-++ ..|+..+.+....++...|++++|..+++.+..+.. -++.+
T Consensus 169 d~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~----~dpet 243 (299)
T KOG3081|consen 169 DATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA----KDPET 243 (299)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC----CCHHH
Confidence 5667767776654 35688899999999875 578888999988889999999999999998886554 55677
Q ss_pred HHHHHHHhhccCChHHHH-HHHHhCC
Q 048321 487 YSCMADLLGRKGKLKEAL-DFVQSMP 511 (641)
Q Consensus 487 ~~~l~~~~~~~g~~~~A~-~~~~~~~ 511 (641)
...++-+-...|...++. +.+....
T Consensus 244 L~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 244 LANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 777776666667665543 3444443
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.24 E-value=2e-06 Score=52.72 Aligned_cols=34 Identities=26% Similarity=0.482 Sum_probs=32.8
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHhHhCCCCCCc
Q 048321 21 QWNSQIREAVNKNEAHKTLLLFRQMKQNDIEPNN 54 (641)
Q Consensus 21 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~ 54 (641)
+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 8999999999999999999999999999999984
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.0071 Score=59.99 Aligned_cols=144 Identities=13% Similarity=0.055 Sum_probs=72.8
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CChhHHHHHHHHHHHcCChHHHHHHHH
Q 048321 361 LELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE-----KIVVSWTTMIAGCALNGEFVEALDLFH 435 (641)
Q Consensus 361 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~ 435 (641)
.+....+++.+...-...-..+|..+++.-.+..-+..|+.+|.+..+ .++...++++.-||. ++..-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHH
Confidence 334444444444322222233455555555555556666666655544 244555555555543 44555666665
Q ss_pred HHHHcCCCCChh-hHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCC--hhHHHHHHHHhhccCChHHHHHHHHhC
Q 048321 436 QLMELDLRPNRV-TFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPE--LDHYSCMADLLGRKGKLKEALDFVQSM 510 (641)
Q Consensus 436 ~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 510 (641)
--... -+|.. -....+.-+.+.++-..++.+|++.... + +.|+ ...|..+++-=+.-|++..+.++-+++
T Consensus 426 LGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s-~--l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~ 498 (656)
T KOG1914|consen 426 LGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS-V--LSADKSKEIWDRMLEYESNVGDLNSILKLEKRR 498 (656)
T ss_pred HHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc-c--CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 54443 23332 2233444555556556666666666543 3 3333 455666666666666666665555443
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.9e-05 Score=65.44 Aligned_cols=114 Identities=9% Similarity=-0.046 Sum_probs=88.3
Q ss_pred HHHHHHHcCCCCChh-hHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC
Q 048321 433 LFHQLMELDLRPNRV-TFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP 511 (641)
Q Consensus 433 ~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 511 (641)
+|++.... .|+.. ....+...+...|++++|.+.|+.+....+ .+...+..+...+.+.|++++|...++...
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 78 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDP----YNSRYWLGLAACCQMLKEYEEAIDAYALAA 78 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555553 55543 455566677888999999999998875333 467788888899999999999999988864
Q ss_pred --CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCcc
Q 048321 512 --IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAP 552 (641)
Q Consensus 512 --~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 552 (641)
.+.+...+..+...+...|+++.|...++++++++|++...
T Consensus 79 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 79 ALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred hcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 34456778888888999999999999999999999986543
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.9e-06 Score=51.55 Aligned_cols=34 Identities=32% Similarity=0.522 Sum_probs=30.8
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 048321 106 VASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQA 139 (641)
Q Consensus 106 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p 139 (641)
+.+||.+|.+|++.|+++.|+++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999887
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00025 Score=63.08 Aligned_cols=162 Identities=13% Similarity=0.073 Sum_probs=129.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHH-HHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHH
Q 048321 413 SWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQ-ACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMA 491 (641)
Q Consensus 413 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~-~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~ 491 (641)
.|..++-+....|+.+.|...++++... -|.+.-...+-. -+...|.+++|.++++...++.+ .|..++---+
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~--fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddp----t~~v~~KRKl 127 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDR--FPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDP----TDTVIRKRKL 127 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCc----chhHHHHHHH
Confidence 4555666677889999999999999886 366553333322 34567999999999999997544 5667777777
Q ss_pred HHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcC---Cc
Q 048321 492 DLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGG---RW 566 (641)
Q Consensus 492 ~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~ 566 (641)
..+-..|+.-+|++-+.+.. +..|...|.-|...|...|+++.|.-.+++++=+.|.++-.+..+++++...| +.
T Consensus 128 Ailka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~ 207 (289)
T KOG3060|consen 128 AILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENL 207 (289)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHH
Confidence 77777888889988887765 77899999999999999999999999999999999999999999999988776 46
Q ss_pred hHHHHHHHHHHhCC
Q 048321 567 DGVANIRTMMKRNQ 580 (641)
Q Consensus 567 ~eA~~~~~~m~~~~ 580 (641)
+-|++++.+..+..
T Consensus 208 ~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 208 ELARKYYERALKLN 221 (289)
T ss_pred HHHHHHHHHHHHhC
Confidence 66777777766543
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.13 E-value=4.3e-06 Score=50.73 Aligned_cols=32 Identities=25% Similarity=0.590 Sum_probs=31.3
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHhHhCCCCC
Q 048321 21 QWNSQIREAVNKNEAHKTLLLFRQMKQNDIEP 52 (641)
Q Consensus 21 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p 52 (641)
+||.+|.+|++.|+++.|+++|++|++.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 89999999999999999999999999999988
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.019 Score=60.56 Aligned_cols=510 Identities=12% Similarity=0.023 Sum_probs=274.4
Q ss_pred HhCCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHhHHHHHHhhccCcCCCChhHHHHHhhccC---CCCc
Q 048321 30 VNKNEAHKTLLLFRQMKQNDIEPNNLTFPFIAKACAKLSDLIYSQMIHGHIVKSPFVKCDRLDCAYKIFDEMA---VRDV 106 (641)
Q Consensus 30 ~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~A~~~f~~~~---~~~~ 106 (641)
...+++..|+....++.+. .||. .|..++.+++. .+.|+.++|..+++... ..|.
T Consensus 20 ld~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl-------------------~r~gk~~ea~~~Le~~~~~~~~D~ 77 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSL-------------------FRLGKGDEALKLLEALYGLKGTDD 77 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHH-------------------HHhcCchhHHHHHhhhccCCCCch
Confidence 4567889999998888764 3444 37777877753 45688899998888764 3377
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHHcCCCChhHHHHHHHHh
Q 048321 107 ASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISSY 186 (641)
Q Consensus 107 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 186 (641)
.+...+-.+|...++.++|..+|++... ..|+..-...+..++.+.+++.+-.++--++.+. .+-..+.+=++++.+
T Consensus 78 ~tLq~l~~~y~d~~~~d~~~~~Ye~~~~--~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Sli 154 (932)
T KOG2053|consen 78 LTLQFLQNVYRDLGKLDEAVHLYERANQ--KYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLI 154 (932)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHh--hCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHH
Confidence 8999999999999999999999999886 4688888889999999998887766665555553 233444443444444
Q ss_pred HcCC----------ChhHHHHHHhcccCCCCCchh---HHHHHHHHhcCCCchHHHHHH-HHHHHCCCCCChhhHHHHHH
Q 048321 187 AKCD----------DLKMAELVFCGIEERLRTVVS---WNSMVAGCTYGDKFDDSLNFY-RHMMYNGFRLDVTTVVSLLS 252 (641)
Q Consensus 187 ~~~g----------~~~~A~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~-~~m~~~g~~p~~~t~~~ll~ 252 (641)
...- -..-|.+.++.+.+.+....+ ...-...+-..|++++|++++ ....+.-...+...-+.-+.
T Consensus 155 lqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~d 234 (932)
T KOG2053|consen 155 LQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLD 234 (932)
T ss_pred HHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 3221 123466666666663201111 112223456678899999999 44444333344445556677
Q ss_pred HhcCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----------------cCCHHHHHHHHhcCCCC-CcchHHH
Q 048321 253 SFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSK----------------CGDIDSARVLFDGICDR-TRVSWTA 315 (641)
Q Consensus 253 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----------------~g~~~~A~~~~~~~~~~-~~~~~~~ 315 (641)
.+...+++.+..++-.+++..|... |...++.+.+ .+.++...+..++.... .--+|-+
T Consensus 235 llk~l~~w~~l~~l~~~Ll~k~~Dd----y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA 310 (932)
T KOG2053|consen 235 LLKLLNRWQELFELSSRLLEKGNDD----YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLA 310 (932)
T ss_pred HHHHhcChHHHHHHHHHHHHhCCcc----hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHH
Confidence 7788889999999999888887332 3333332221 22333333333322111 1123333
Q ss_pred HHHH---HHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCC--CCchh---HHHHHH
Q 048321 316 MISG---YAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGL--KDNVM---VCNALI 387 (641)
Q Consensus 316 li~~---~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~---~~~~li 387 (641)
-+.. +..-|+.+++...|-+- -|.+|-.. .=+..|...=..++-..++.......- ..|.. .+...+
T Consensus 311 ~lel~kr~~~~gd~ee~~~~y~~k--fg~kpcc~---~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l 385 (932)
T KOG2053|consen 311 RLELDKRYKLIGDSEEMLSYYFKK--FGDKPCCA---IDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVL 385 (932)
T ss_pred HHHHHHHhcccCChHHHHHHHHHH--hCCCcHhH---hhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHH
Confidence 3333 33457777766544322 22222111 111111111111111222222211100 00000 011111
Q ss_pred HHHHhcCCH-----HHHHHHH----hhCCC---------C------C---hhHHHHHHHHHHHcCChH---HHHHHHHHH
Q 048321 388 DMYSKCGSI-----GDARELF----YALPE---------K------I---VVSWTTMIAGCALNGEFV---EALDLFHQL 437 (641)
Q Consensus 388 ~~~~~~g~~-----~~A~~~~----~~~~~---------~------~---~~~~~~li~~~~~~g~~~---~A~~~~~~m 437 (641)
..-.-+|.+ +.-..++ -...+ | + .-+-+.|+..+-+.++.. +|+-+++.-
T Consensus 386 ~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~g 465 (932)
T KOG2053|consen 386 LLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENG 465 (932)
T ss_pred HHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 111112211 1111111 11111 1 1 125567788888877755 445555554
Q ss_pred HHcCCCCCh-hhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC--CCC
Q 048321 438 MELDLRPNR-VTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP--IKS 514 (641)
Q Consensus 438 ~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p 514 (641)
... .|.. .+-..++..|+-.|-+..|.+.|+.+.- .. +.-|...|- +...+...|++..+...++... ...
T Consensus 466 lt~--s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdI-K~--IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~lkfy~~ 539 (932)
T KOG2053|consen 466 LTK--SPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDI-KN--IQTDTLGHL-IFRRAETSGRSSFASNTFNEHLKFYDS 539 (932)
T ss_pred hhc--CCccHHHHHHHHHHHHHhcCChhHHHHHHhcch-HH--hhhccchHH-HHHHHHhcccchhHHHHHHHHHHHHhh
Confidence 443 3433 3556677888888999999999988763 33 444433332 2244556678777777776644 111
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCC----CCccHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 515 DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPH----SAAPYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 515 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
+..--.-++..-.++|.+..-.++..---.+.-. -...-......+...++.++-.+.++.|+..
T Consensus 540 ~~kE~~eyI~~AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~l~ 608 (932)
T KOG2053|consen 540 SLKETPEYIALAYRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRGTQLLKLLESMKLP 608 (932)
T ss_pred hhhhhHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhccccC
Confidence 1111112233334567666655553211111110 0112224556677788888888888777743
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.11 E-value=7.3e-05 Score=63.70 Aligned_cols=114 Identities=14% Similarity=-0.037 Sum_probs=73.0
Q ss_pred cCChHHHHHHHHHHHhhhCCCCCC-ChhHHHHHHHHhhccCChHHHHHHHHhCC-CCCCh----hHHHHHHHHHHHcCCH
Q 048321 459 TGFLEKGWAISIIQYDDKGISYNP-ELDHYSCMADLLGRKGKLKEALDFVQSMP-IKSDA----GIWGTLLCACKIHLNI 532 (641)
Q Consensus 459 ~g~~~~a~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~----~~~~~ll~~~~~~g~~ 532 (641)
.++...+...++.+...++ -.| .....-.+...+...|++++|...|+... ..||. .....|...+...|++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~--~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYP--SSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred CCCHHHHHHHHHHHHHHCC--CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 5666667666777765544 111 12223334566777777777777777765 22332 2344556667778888
Q ss_pred HHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHH
Q 048321 533 EIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTM 575 (641)
Q Consensus 533 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~ 575 (641)
++|+..++.. .-.+..+..+..+|++|.+.|++++|...++.
T Consensus 102 d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 102 DEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 8888887663 22333466777888888888998888888765
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=2.6e-05 Score=77.26 Aligned_cols=85 Identities=12% Similarity=0.011 Sum_probs=45.7
Q ss_pred hhccCChHHHHHHHHhCC-CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHH
Q 048321 494 LGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVAN 571 (641)
Q Consensus 494 ~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~ 571 (641)
+...|++++|++.|+++. ..| +...|..+..++...|++++|+..++++++++|+++..|..++.+|...|++++|.+
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~ 91 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKA 91 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 344455555555555543 222 334455555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHh
Q 048321 572 IRTMMKR 578 (641)
Q Consensus 572 ~~~~m~~ 578 (641)
.+++...
T Consensus 92 ~~~~al~ 98 (356)
T PLN03088 92 ALEKGAS 98 (356)
T ss_pred HHHHHHH
Confidence 5555443
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.4e-05 Score=72.80 Aligned_cols=90 Identities=14% Similarity=0.089 Sum_probs=44.9
Q ss_pred HhccCChHHHHHHHHHHHhhhCCCCCCC-hhHHHHHHHHhhccCChHHHHHHHHhCC-CCCC-hhHHHHHHHHHHHcCCH
Q 048321 456 CTHTGFLEKGWAISIIQYDDKGISYNPE-LDHYSCMADLLGRKGKLKEALDFVQSMP-IKSD-AGIWGTLLCACKIHLNI 532 (641)
Q Consensus 456 ~~~~g~~~~a~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~ll~~~~~~g~~ 532 (641)
..+.+++++|+..|..+++ +.|+ ...|.--..+|.+.|.++.|++-.+... ..|. ..+|..|..+|...|++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~-----l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE-----LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh-----cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcH
Confidence 3444555555555555553 2232 3333444455555555555555444433 3332 23555555555555555
Q ss_pred HHHHHHHHHhHccCCCCC
Q 048321 533 EIGEYVAYCLFKLEPHSA 550 (641)
Q Consensus 533 ~~a~~~~~~~~~~~p~~~ 550 (641)
++|++.|+++++++|+|.
T Consensus 166 ~~A~~aykKaLeldP~Ne 183 (304)
T KOG0553|consen 166 EEAIEAYKKALELDPDNE 183 (304)
T ss_pred HHHHHHHHhhhccCCCcH
Confidence 555555555555555543
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.0001 Score=72.70 Aligned_cols=124 Identities=19% Similarity=0.180 Sum_probs=103.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHhcc
Q 048321 381 MVCNALIDMYSKCGSIGDARELFYALPEKIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNR-VTFLAVLQACTHT 459 (641)
Q Consensus 381 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~ 459 (641)
....+|+..+...++++.|..+|+++.+.++..+..++..+...++-.+|++++++.... .|.. .....-...|.+.
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhc
Confidence 344556777777899999999999999877777778888888889999999999999975 4543 4555555678899
Q ss_pred CChHHHHHHHHHHHhhhCCCCCCC-hhHHHHHHHHhhccCChHHHHHHHHhCC
Q 048321 460 GFLEKGWAISIIQYDDKGISYNPE-LDHYSCMADLLGRKGKLKEALDFVQSMP 511 (641)
Q Consensus 460 g~~~~a~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 511 (641)
++++.|..+.+++.+ ..|+ ..+|..|+.+|.+.|++++|+..++.+|
T Consensus 248 ~~~~lAL~iAk~av~-----lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVE-----LSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHH-----hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999999999986 3454 6799999999999999999999999998
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.08 E-value=2.6e-05 Score=60.89 Aligned_cols=93 Identities=16% Similarity=0.166 Sum_probs=75.7
Q ss_pred HHHHHHHhhccCChHHHHHHHHhCC-CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcC
Q 048321 487 YSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGG 564 (641)
Q Consensus 487 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 564 (641)
+..++..+...|++++|...++.+. ..| +...+..+...+...|+++.|...++++.+..|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 4556677778888888888888865 333 44677777888888899999999999999999988888899999999999
Q ss_pred CchHHHHHHHHHHhC
Q 048321 565 RWDGVANIRTMMKRN 579 (641)
Q Consensus 565 ~~~eA~~~~~~m~~~ 579 (641)
++++|.+.++...+.
T Consensus 83 ~~~~a~~~~~~~~~~ 97 (100)
T cd00189 83 KYEEALEAYEKALEL 97 (100)
T ss_pred hHHHHHHHHHHHHcc
Confidence 999999988876543
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00076 Score=72.95 Aligned_cols=237 Identities=10% Similarity=0.012 Sum_probs=152.2
Q ss_pred CCCC-hhhHHHHHHHHhccCChhHHHHHHHHHHHHcCCCCh-hHHHHHHHHhHcCCChhHHHHHHhcccCCCCCchhHHH
Q 048321 137 IQAD-FVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADV-SVCNTWISSYAKCDDLKMAELVFCGIEERLRTVVSWNS 214 (641)
Q Consensus 137 ~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 214 (641)
..|+ ...+..|+..+...++++++.++.+...+.. |+. ..|-.+...+...++.+.+..+ .
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~--P~~i~~yy~~G~l~~q~~~~~~~~lv--~------------- 88 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH--KKSISALYISGILSLSRRPLNDSNLL--N------------- 88 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CcceehHHHHHHHHHhhcchhhhhhh--h-------------
Confidence 3443 3457778888888888888888888666543 332 3333333366666665555444 2
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 048321 215 MVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVVSLLSSFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGD 294 (641)
Q Consensus 215 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 294 (641)
++.......++.-...+...|... .-+...+..+..+|-+.|+.+++..+++++++.. +.|+.+.|.+...|... +
T Consensus 89 ~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 89 LIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred hhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-h
Confidence 222333333343333333444442 2344577788888889999999999999999888 77888999999999988 9
Q ss_pred HHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHc
Q 048321 295 IDSARVLFDGICDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSG 374 (641)
Q Consensus 295 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 374 (641)
+++|..++.+. +..|...+++..+.+++.++... .|+.+.+ -.++.+.+...
T Consensus 165 L~KA~~m~~KA-----------V~~~i~~kq~~~~~e~W~k~~~~--~~~d~d~---------------f~~i~~ki~~~ 216 (906)
T PRK14720 165 KEKAITYLKKA-----------IYRFIKKKQYVGIEEIWSKLVHY--NSDDFDF---------------FLRIERKVLGH 216 (906)
T ss_pred HHHHHHHHHHH-----------HHHHHhhhcchHHHHHHHHHHhc--CcccchH---------------HHHHHHHHHhh
Confidence 99998887654 34477777888888888888775 3333222 22223333321
Q ss_pred -CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHH
Q 048321 375 -GLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGCA 422 (641)
Q Consensus 375 -~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 422 (641)
|..--..++-.+-..|.+.++++++..+|+.+.+ .|.....-++..|.
T Consensus 217 ~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 217 REFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 3333445566677778888888888888887765 34455566666665
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.8e-06 Score=64.58 Aligned_cols=78 Identities=12% Similarity=0.118 Sum_probs=54.3
Q ss_pred cCChHHHHHHHHhCC-CCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHH
Q 048321 497 KGKLKEALDFVQSMP-IKS---DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANI 572 (641)
Q Consensus 497 ~g~~~~A~~~~~~~~-~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~ 572 (641)
.|++++|+.+++++. ..| +...|..+..++.+.|++++|..++++ .+.+|.++.....++.+|...|++++|++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 456666766666654 222 344566677777788888888888877 667777667777778888888888888888
Q ss_pred HHH
Q 048321 573 RTM 575 (641)
Q Consensus 573 ~~~ 575 (641)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 765
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.98 E-value=1.3e-05 Score=58.32 Aligned_cols=64 Identities=16% Similarity=0.116 Sum_probs=58.6
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcC-CchHHHHHHHHHHh
Q 048321 515 DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGG-RWDGVANIRTMMKR 578 (641)
Q Consensus 515 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~eA~~~~~~m~~ 578 (641)
++.+|..+...+...|++++|+..++++++++|+++..|..++.+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46688889999999999999999999999999999999999999999999 79999999987764
|
... |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00043 Score=65.93 Aligned_cols=152 Identities=11% Similarity=0.047 Sum_probs=110.8
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHH--HHhccCChHHHHHHHHHHHhhhCCCCCCChhH-----------
Q 048321 420 GCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQ--ACTHTGFLEKGWAISIIQYDDKGISYNPELDH----------- 486 (641)
Q Consensus 420 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~--~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~----------- 486 (641)
++.-.|++++|.+.--..++. .++. .+..+++ ++...++.+.|...|++.++ +.|+...
T Consensus 178 cl~~~~~~~~a~~ea~~ilkl--d~~n-~~al~vrg~~~yy~~~~~ka~~hf~qal~-----ldpdh~~sk~~~~~~k~l 249 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKL--DATN-AEALYVRGLCLYYNDNADKAINHFQQALR-----LDPDHQKSKSASMMPKKL 249 (486)
T ss_pred hhhhcccchhHHHHHHHHHhc--ccch-hHHHHhcccccccccchHHHHHHHhhhhc-----cChhhhhHHhHhhhHHHH
Confidence 455678888888776666653 2222 2222222 44556778888888887774 3354332
Q ss_pred --HHHHHHHhhccCChHHHHHHHHhCC-CCC-----ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHH
Q 048321 487 --YSCMADLLGRKGKLKEALDFVQSMP-IKS-----DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMAN 558 (641)
Q Consensus 487 --~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 558 (641)
+.-=.+-..+.|++.+|.+.+.+.. +.| +...|........+.|+.++|+..-+.+++++|.-..+|...++
T Consensus 250 e~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~ 329 (486)
T KOG0550|consen 250 EVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRAN 329 (486)
T ss_pred HHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHH
Confidence 2222345678999999999999976 444 44456556666778999999999999999999998999999999
Q ss_pred HHHhcCCchHHHHHHHHHHhC
Q 048321 559 KYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 559 ~~~~~g~~~eA~~~~~~m~~~ 579 (641)
++...++|++|.+.+++..+.
T Consensus 330 c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 330 CHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999887764
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.94 E-value=8.3e-05 Score=60.98 Aligned_cols=94 Identities=13% Similarity=0.016 Sum_probs=56.0
Q ss_pred HHHHHHHHhhccCChHHHHHHHHhCC-CCCC----hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCC---CccHHHHH
Q 048321 486 HYSCMADLLGRKGKLKEALDFVQSMP-IKSD----AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHS---AAPYVEMA 557 (641)
Q Consensus 486 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~ 557 (641)
.+..++..+.+.|++++|.+.|..+. ..|+ ...+..+...+...|+++.|...+++++...|++ +..+..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 34445555566666666666666554 2222 2244455566666666777777777666666654 34566666
Q ss_pred HHHHhcCCchHHHHHHHHHHhC
Q 048321 558 NKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 558 ~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
.+|...|++++|.+.++++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 6777777777777766666554
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.92 E-value=1.9e-05 Score=56.47 Aligned_cols=58 Identities=12% Similarity=0.024 Sum_probs=50.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 522 LLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 522 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
+...+...|++++|+..++++++.+|+++..+..++.++...|++++|...++++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4566788899999999999999999999999999999999999999999999888654
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.91 E-value=1.5e-05 Score=47.12 Aligned_cols=31 Identities=35% Similarity=0.752 Sum_probs=28.3
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 048321 107 ASWNAMLVGFAQMGFLENVLRLFYNMRLVGI 137 (641)
Q Consensus 107 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~ 137 (641)
++||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4799999999999999999999999998874
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.91 E-value=1.8e-05 Score=57.28 Aligned_cols=52 Identities=10% Similarity=0.117 Sum_probs=44.8
Q ss_pred HHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048321 527 KIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 527 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
...|++++|+..++++++.+|+++..+..++.+|.+.|++++|.++++.+..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4578899999999999999999999999999999999999999999887665
|
... |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0001 Score=67.91 Aligned_cols=100 Identities=12% Similarity=0.023 Sum_probs=88.1
Q ss_pred CChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcC---CHHHHHHHHHHhHccCCCCCccHHHH
Q 048321 482 PELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHL---NIEIGEYVAYCLFKLEPHSAAPYVEM 556 (641)
Q Consensus 482 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p~~~~~~~~l 556 (641)
-|.+.|..|...|.+.|+++.|..-|.+.. ..+++..+..+..++.... +..++..++++++.++|.|..+...|
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lL 233 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLL 233 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHH
Confidence 579999999999999999999999999976 4556778888887764432 67899999999999999999999999
Q ss_pred HHHHHhcCCchHHHHHHHHHHhCCC
Q 048321 557 ANKYALGGRWDGVANIRTMMKRNQV 581 (641)
Q Consensus 557 ~~~~~~~g~~~eA~~~~~~m~~~~~ 581 (641)
+-.+...|++.+|...++.|.+...
T Consensus 234 A~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 234 AFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCC
Confidence 9999999999999999999998653
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00033 Score=58.71 Aligned_cols=92 Identities=13% Similarity=0.053 Sum_probs=80.4
Q ss_pred HHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcC
Q 048321 487 YSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGG 564 (641)
Q Consensus 487 ~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 564 (641)
.-....-+-..|++++|..+|.-+. ..-|..-|..|...|...++++.|+..+..+..++++||.++...+.+|...|
T Consensus 40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 40 LYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhC
Confidence 3344555668999999999998865 33467788899999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHh
Q 048321 565 RWDGVANIRTMMKR 578 (641)
Q Consensus 565 ~~~eA~~~~~~m~~ 578 (641)
+.++|+.-++...+
T Consensus 120 ~~~~A~~~f~~a~~ 133 (165)
T PRK15331 120 KAAKARQCFELVNE 133 (165)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999988775
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.87 E-value=1.8e-05 Score=46.68 Aligned_cols=30 Identities=23% Similarity=0.392 Sum_probs=28.7
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHhHhCCC
Q 048321 21 QWNSQIREAVNKNEAHKTLLLFRQMKQNDI 50 (641)
Q Consensus 21 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~ 50 (641)
+||.+|++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 899999999999999999999999999875
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00096 Score=56.80 Aligned_cols=124 Identities=18% Similarity=0.090 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCCh--hH
Q 048321 413 SWTTMIAGCALNGEFVEALDLFHQLMELDLRPNR----VTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPEL--DH 486 (641)
Q Consensus 413 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~--~~ 486 (641)
.|..++..+ ..++...+...++.+... .|+. .....+...+...|++++|...|+.+....+ .|.. ..
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~---d~~l~~~a 87 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAP---DPELKPLA 87 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC---CHHHHHHH
Confidence 344444444 367777777777777765 3333 1233344566777788888888777774321 1221 23
Q ss_pred HHHHHHHhhccCChHHHHHHHHhCCC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHh
Q 048321 487 YSCMADLLGRKGKLKEALDFVQSMPI-KSDAGIWGTLLCACKIHLNIEIGEYVAYCL 542 (641)
Q Consensus 487 ~~~l~~~~~~~g~~~~A~~~~~~~~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 542 (641)
.-.+..++...|++++|+..++.... ...+..+..+...+...|+.++|...|+++
T Consensus 88 ~l~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 88 RLRLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 34456777777888888888776542 223445566667777888888888877765
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.034 Score=53.82 Aligned_cols=107 Identities=16% Similarity=0.091 Sum_probs=73.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChH
Q 048321 384 NALIDMYSKCGSIGDARELFYALPEKIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLE 463 (641)
Q Consensus 384 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 463 (641)
+..|.-+...|+...|.++-.+..-||-.-|-..+.+|+..++|++-.++... +-+++-|..++.+|...|...
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~ 254 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKK 254 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHH
Confidence 33455566677788888888887778888888888888888888776654332 223467777778888888877
Q ss_pred HHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHh
Q 048321 464 KGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQS 509 (641)
Q Consensus 464 ~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 509 (641)
+|..+...+. +.--+..|.++|++.+|.+.--+
T Consensus 255 eA~~yI~k~~-------------~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 255 EASKYIPKIP-------------DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHHHhCC-------------hHHHHHHHHHCCCHHHHHHHHHH
Confidence 7776654421 13456777788888777666444
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00011 Score=67.09 Aligned_cols=96 Identities=19% Similarity=0.243 Sum_probs=79.2
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCC-hhHHHHHHHHhhc
Q 048321 419 AGCALNGEFVEALDLFHQLMELDLRPNR-VTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPE-LDHYSCMADLLGR 496 (641)
Q Consensus 419 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 496 (641)
.-+.+.+++.+|+..|.+.++. .|+. +-|..-..+|++.|.++.|++-.+..+. +.|. ...|..|.-+|..
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~-----iDp~yskay~RLG~A~~~ 161 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS-----IDPHYSKAYGRLGLAYLA 161 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh-----cChHHHHHHHHHHHHHHc
Confidence 4467789999999999999985 6655 4555667799999999999999888875 4565 6789999999999
Q ss_pred cCChHHHHHHHHhCC-CCCChhHHHH
Q 048321 497 KGKLKEALDFVQSMP-IKSDAGIWGT 521 (641)
Q Consensus 497 ~g~~~~A~~~~~~~~-~~p~~~~~~~ 521 (641)
.|++++|++.|++.. +.|+..+|..
T Consensus 162 ~gk~~~A~~aykKaLeldP~Ne~~K~ 187 (304)
T KOG0553|consen 162 LGKYEEAIEAYKKALELDPDNESYKS 187 (304)
T ss_pred cCcHHHHHHHHHhhhccCCCcHHHHH
Confidence 999999999999977 8887776644
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00024 Score=70.50 Aligned_cols=105 Identities=10% Similarity=-0.082 Sum_probs=67.9
Q ss_pred HHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCC-ChhHHHHHHHHHHHcCCH
Q 048321 455 ACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHLNI 532 (641)
Q Consensus 455 ~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~ 532 (641)
.+...|++++|...|..+++..+ .+...|..+..+|.+.|++++|+..++++. ..| +...|..+..+|...|++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~P----~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLDP----NNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence 34455666666666666664322 335556666666667777777777666654 333 455677777777777888
Q ss_pred HHHHHHHHHhHccCCCCCccHHHHHHHHHhc
Q 048321 533 EIGEYVAYCLFKLEPHSAAPYVEMANKYALG 563 (641)
Q Consensus 533 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 563 (641)
++|+..++++++++|+++.....+..+..+.
T Consensus 87 ~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 87 QTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 8888888888888887777666666554444
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00079 Score=69.76 Aligned_cols=138 Identities=14% Similarity=-0.015 Sum_probs=62.9
Q ss_pred CChhHHHHHHHHHHHc-----CChHHHHHHHHHHHHcCCCCChh-hHHHHHHHHhcc--------CChHHHHHHHHHHHh
Q 048321 409 KIVVSWTTMIAGCALN-----GEFVEALDLFHQLMELDLRPNRV-TFLAVLQACTHT--------GFLEKGWAISIIQYD 474 (641)
Q Consensus 409 ~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~--------g~~~~a~~~~~~~~~ 474 (641)
.|...|...+.+.... +....|..+|++..+. .|+.. .+..+..++... ..+..+.+.......
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 4556666666664332 2356788888888875 67754 333332222111 011222222222211
Q ss_pred hhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCC
Q 048321 475 DKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSA 550 (641)
Q Consensus 475 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 550 (641)
... ...+...|.++.-.+...|++++|...++++. ..|+...|..+...+...|+.++|...+++++.++|.++
T Consensus 413 l~~--~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 413 LPE--LNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred ccc--CcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 101 11222334444433334455555555555443 334444444444445555555555555555555555443
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00028 Score=57.80 Aligned_cols=102 Identities=10% Similarity=-0.040 Sum_probs=62.0
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCC-ChhHHHHHHHHhhccCChHHHHHHHHhCC-CCCC----hhHHHHH
Q 048321 449 FLAVLQACTHTGFLEKGWAISIIQYDDKGISYNP-ELDHYSCMADLLGRKGKLKEALDFVQSMP-IKSD----AGIWGTL 522 (641)
Q Consensus 449 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l 522 (641)
+..+...+...|++++|...|..+....+ -.| ....+..++.++.+.|++++|...++.+. ..|+ ..++..+
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYP--KSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCC--CccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 33444455556666666666666654322 111 12344556666667777777777766654 2232 3456666
Q ss_pred HHHHHHcCCHHHHHHHHHHhHccCCCCCcc
Q 048321 523 LCACKIHLNIEIGEYVAYCLFKLEPHSAAP 552 (641)
Q Consensus 523 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 552 (641)
...+...|+.+.|...++++++..|+++..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 777777888888888888888888876443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00073 Score=64.57 Aligned_cols=133 Identities=12% Similarity=0.049 Sum_probs=103.0
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHH-HhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHH
Q 048321 412 VSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQA-CTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCM 490 (641)
Q Consensus 412 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l 490 (641)
.+|-.++....+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+.++ .+...|...
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~----~~~~~~~~Y 76 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFP----SDPDFWLEY 76 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHT----T-HHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC----CCHHHHHHH
Confidence 468888888888888999999999998542 2233445444443 3445777779999999998877 788889999
Q ss_pred HHHhhccCChHHHHHHHHhCC-CCCC----hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCC
Q 048321 491 ADLLGRKGKLKEALDFVQSMP-IKSD----AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHS 549 (641)
Q Consensus 491 ~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 549 (641)
++.+.+.|+.+.|..+|++.. .-|. ...|...+..-.+.|+.+....+.+++.+.-|++
T Consensus 77 ~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 77 LDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 999999999999999999976 2232 2489999999999999999999999999988874
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0007 Score=59.64 Aligned_cols=130 Identities=15% Similarity=0.183 Sum_probs=82.6
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHH
Q 048321 411 VVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPN--RVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYS 488 (641)
Q Consensus 411 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~ 488 (641)
...+..+...+...|++++|+..|++.......|+ ...+..+...+.+.|++++|...+....+..+ .+...+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~ 110 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP----KQPSALN 110 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc----ccHHHHH
Confidence 34566677777777888888888887776432222 23566666677777888888887777775322 2345555
Q ss_pred HHHHHhhccCChHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCC
Q 048321 489 CMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGR 565 (641)
Q Consensus 489 ~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 565 (641)
.++.+|...|+...+..-+... ...+++|.+.++++++++|++ |..++..+...|+
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 6666666666655544332221 123577888888999988876 5556666655554
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00022 Score=62.78 Aligned_cols=82 Identities=15% Similarity=0.047 Sum_probs=64.7
Q ss_pred hhHHHHHHHHhhccCChHHHHHHHHhCC-CCCC----hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHH
Q 048321 484 LDHYSCMADLLGRKGKLKEALDFVQSMP-IKSD----AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMAN 558 (641)
Q Consensus 484 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 558 (641)
...+..++..+.+.|++++|...|++.. ..|+ ...+..+...+...|+++.|+..++++++..|+++..+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 3346666677777788888888877754 2222 3577788888899999999999999999999998888989999
Q ss_pred HHHhcCC
Q 048321 559 KYALGGR 565 (641)
Q Consensus 559 ~~~~~g~ 565 (641)
+|...|+
T Consensus 115 ~~~~~g~ 121 (172)
T PRK02603 115 IYHKRGE 121 (172)
T ss_pred HHHHcCC
Confidence 9988877
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0002 Score=62.88 Aligned_cols=93 Identities=12% Similarity=-0.070 Sum_probs=75.6
Q ss_pred hhHHHHHHHHhhccCChHHHHHHHHhCC-CCCC----hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHH
Q 048321 484 LDHYSCMADLLGRKGKLKEALDFVQSMP-IKSD----AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMAN 558 (641)
Q Consensus 484 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 558 (641)
...|..++..+...|++++|+..|++.. ..|+ ..+|..+...+...|+.++|+..+++++.++|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 4556777778888899999999888864 2222 3478888899999999999999999999999998888889999
Q ss_pred HHH-------hcCCchHHHHHHHHH
Q 048321 559 KYA-------LGGRWDGVANIRTMM 576 (641)
Q Consensus 559 ~~~-------~~g~~~eA~~~~~~m 576 (641)
+|. ..|++++|...+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 888 888888776666554
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00033 Score=54.36 Aligned_cols=89 Identities=17% Similarity=0.037 Sum_probs=44.9
Q ss_pred HHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCH
Q 048321 455 ACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNI 532 (641)
Q Consensus 455 ~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~ 532 (641)
.+...|++++|...++.+.+..+ .+...+..+...+...|++++|.+.++... .+.+..++..+...+...|++
T Consensus 9 ~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (100)
T cd00189 9 LYYKLGDYDEALEYYEKALELDP----DNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKY 84 (100)
T ss_pred HHHHHhcHHHHHHHHHHHHhcCC----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhH
Confidence 33444455555555544443211 122334444455555555555555555433 222334555556666666666
Q ss_pred HHHHHHHHHhHccCC
Q 048321 533 EIGEYVAYCLFKLEP 547 (641)
Q Consensus 533 ~~a~~~~~~~~~~~p 547 (641)
+.|...++++++..|
T Consensus 85 ~~a~~~~~~~~~~~~ 99 (100)
T cd00189 85 EEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHccCC
Confidence 666666666666555
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.065 Score=52.36 Aligned_cols=420 Identities=12% Similarity=0.057 Sum_probs=229.6
Q ss_pred CCCChhHHHHHhhccCCC---C------cccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHH--hccC
Q 048321 87 KCDRLDCAYKIFDEMAVR---D------VASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAA--IHAK 155 (641)
Q Consensus 87 ~~~~~~~A~~~f~~~~~~---~------~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~--~~~~ 155 (641)
+.+++.+|.++|.++-.. + .+.-+.+|++|..+ +.+.....+....+. .| ...|..+..++ -+.+
T Consensus 18 kq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~~k 93 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYKQK 93 (549)
T ss_pred HHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHHhh
Confidence 456777777777766422 1 22345667777654 344444444444432 23 34455555553 3566
Q ss_pred ChhHHHHHHHHHHHH--cC------------CCChhHHHHHHHHhHcCCChhHHHHHHhcccCC------CCCchhHHHH
Q 048321 156 HLSLLKSVHSFGIHI--GV------------DADVSVCNTWISSYAKCDDLKMAELVFCGIEER------LRTVVSWNSM 215 (641)
Q Consensus 156 ~~~~a~~~~~~~~~~--~~------------~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~l 215 (641)
.+..|.+.+..-... +. -+|...-+..++.+...|++.+++.+++++... .-+..+||.+
T Consensus 94 ~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~ 173 (549)
T PF07079_consen 94 EYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRA 173 (549)
T ss_pred hHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHH
Confidence 777777766655443 21 123334456667778888888888888877664 2467777774
Q ss_pred HHHHhcC--------CC-------chHHHHHHHHHHHC------CCCCChhhHHHHHHHhcCCC--chHHHHHHHHHHHH
Q 048321 216 VAGCTYG--------DK-------FDDSLNFYRHMMYN------GFRLDVTTVVSLLSSFVCPE--ALVQGRLVHSHGIH 272 (641)
Q Consensus 216 i~~~~~~--------g~-------~~~A~~~~~~m~~~------g~~p~~~t~~~ll~~~~~~~--~~~~a~~~~~~~~~ 272 (641)
+-.+.+. .. ++.++-..++|... .+.|....+..++....-.. ++.--.+++..-..
T Consensus 174 vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~ 253 (549)
T PF07079_consen 174 VLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWEN 253 (549)
T ss_pred HHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHh
Confidence 4333321 11 22223333333221 24455555666665544322 23333444444444
Q ss_pred hCCCCch-hHHHHHHHHHHhcCCHHHHHHHHhcC--------CCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC
Q 048321 273 YGFDLDV-SVINTLISMYSKCGDIDSARVLFDGI--------CDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELP 343 (641)
Q Consensus 273 ~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 343 (641)
.-+.|+- -+...|+.-+.+ +.+++..+-+.+ .+.=+.++..++...++.++...|-..+.-+.-. .|
T Consensus 254 ~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp 329 (549)
T PF07079_consen 254 FYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DP 329 (549)
T ss_pred hccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CC
Confidence 4444543 344455555554 445554444333 2233457888888899999999998888766543 33
Q ss_pred CHHHH-------HHHHHHhc-Cc---CchHHHHHHHHHHHHcCCCCchhHHH--HHHHHHHhcCC-HHHHHHHHhhCCC-
Q 048321 344 DLVTV-------LSMISGCG-QS---GALELGKWFDNYACSGGLKDNVMVCN--ALIDMYSKCGS-IGDARELFYALPE- 408 (641)
Q Consensus 344 ~~~t~-------~~ll~~~~-~~---~~~~~a~~~~~~~~~~~~~~~~~~~~--~li~~~~~~g~-~~~A~~~~~~~~~- 408 (641)
+...- ..+.+..+ .- -++..-..+|+.+....+....-+.. --..-+.+.|. -++|..+++.+.+
T Consensus 330 ~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~f 409 (549)
T PF07079_consen 330 RISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQF 409 (549)
T ss_pred cchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 33211 11111112 11 12233344555555544332211111 11233455555 7788888887765
Q ss_pred --CChhHHHHHHH----HHHHc---CChHHHHHHHHHHHHcCCCCChh----hHHHHHH--HHhccCChHHHHHHHHHHH
Q 048321 409 --KIVVSWTTMIA----GCALN---GEFVEALDLFHQLMELDLRPNRV----TFLAVLQ--ACTHTGFLEKGWAISIIQY 473 (641)
Q Consensus 409 --~~~~~~~~li~----~~~~~---g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~--~~~~~g~~~~a~~~~~~~~ 473 (641)
.|..+-|.... +|.+. .....-+.+-+-..+.|+.|-.+ .-+.+.. -+...|++.++.-.-..+.
T Consensus 410 t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~ 489 (549)
T PF07079_consen 410 TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLT 489 (549)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 45544443322 23221 22333344444455678777543 3333433 3456789998877766666
Q ss_pred hhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCCCCCChhHHHH
Q 048321 474 DDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGT 521 (641)
Q Consensus 474 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 521 (641)
+ +.|++.+|..++-++....+++||.+++.++| |+..++++
T Consensus 490 ~-----iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~ds 530 (549)
T PF07079_consen 490 K-----IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRDS 530 (549)
T ss_pred H-----hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHHH
Confidence 4 77999999999999999999999999999987 56556554
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00015 Score=53.29 Aligned_cols=58 Identities=12% Similarity=0.003 Sum_probs=51.6
Q ss_pred HHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048321 523 LCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRNQ 580 (641)
Q Consensus 523 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~~ 580 (641)
...+...++++.|.++++++++++|+++..+...+.+|...|++++|.+.++...+.+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 3567888999999999999999999999999999999999999999999998887653
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.63 E-value=2.4e-05 Score=46.95 Aligned_cols=33 Identities=24% Similarity=0.390 Sum_probs=30.9
Q ss_pred HHHhHccCCCCCccHHHHHHHHHhcCCchHHHH
Q 048321 539 AYCLFKLEPHSAAPYVEMANKYALGGRWDGVAN 571 (641)
Q Consensus 539 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~ 571 (641)
++++++++|+|+.+|..++.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 688999999999999999999999999999963
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.003 Score=55.42 Aligned_cols=124 Identities=18% Similarity=0.182 Sum_probs=75.1
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHH
Q 048321 411 VVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPN--RVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYS 488 (641)
Q Consensus 411 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~ 488 (641)
...|..+...+...|++++|+..|++.......|. ..++..+...+...|++++|...++......+ .....+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~----~~~~~~~ 110 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNP----FLPQALN 110 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc----CcHHHHH
Confidence 34667777777778888888888888876532221 23666777778888888888888887775322 2234455
Q ss_pred HHHHHhh-------ccCChHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHH
Q 048321 489 CMADLLG-------RKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYA 561 (641)
Q Consensus 489 ~l~~~~~-------~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 561 (641)
.+...+. +.|++++|+. .+++|..+++++++.+|++ +......+.
T Consensus 111 ~la~i~~~~~~~~~~~g~~~~A~~-------------------------~~~~a~~~~~~a~~~~p~~---~~~~~~~~~ 162 (168)
T CHL00033 111 NMAVICHYRGEQAIEQGDSEIAEA-------------------------WFDQAAEYWKQAIALAPGN---YIEAQNWLK 162 (168)
T ss_pred HHHHHHHHhhHHHHHcccHHHHHH-------------------------HHHHHHHHHHHHHHhCccc---HHHHHHHHH
Confidence 5555555 2333333222 2345666777788887764 234444455
Q ss_pred hcCCc
Q 048321 562 LGGRW 566 (641)
Q Consensus 562 ~~g~~ 566 (641)
..|++
T Consensus 163 ~~~~~ 167 (168)
T CHL00033 163 ITGRF 167 (168)
T ss_pred HhcCC
Confidence 55554
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.60 E-value=9.5e-05 Score=52.85 Aligned_cols=61 Identities=15% Similarity=0.117 Sum_probs=49.6
Q ss_pred HHHHhhccCChHHHHHHHHhCC-CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCC
Q 048321 490 MADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSA 550 (641)
Q Consensus 490 l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 550 (641)
+...+.+.|++++|.+.|++.. ..| +...|..+...+...|++++|...++++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4567788899999999998876 445 566888888999999999999999999999999864
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.16 Score=53.99 Aligned_cols=115 Identities=11% Similarity=0.069 Sum_probs=71.5
Q ss_pred CCCChhHHHHHhhccCCC-CcccHHHHHHHH--HhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHH
Q 048321 87 KCDRLDCAYKIFDEMAVR-DVASWNAMLVGF--AQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSV 163 (641)
Q Consensus 87 ~~~~~~~A~~~f~~~~~~-~~~~~~~li~~~--~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 163 (641)
..+++..|....+.+.++ .-..|..++.++ .+.|+.++|..+++.....+.. |..|...+-.+|...++.+++..+
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHH
Confidence 345666676666665422 122455555554 4577777777777776655433 666777777777777777777777
Q ss_pred HHHHHHHcCCCChhHHHHHHHHhHcCCChhH----HHHHHhcccC
Q 048321 164 HSFGIHIGVDADVSVCNTWISSYAKCDDLKM----AELVFCGIEE 204 (641)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~----A~~~~~~~~~ 204 (641)
++++.+. .|+......+..+|.+.+++.. |.+++...++
T Consensus 100 Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk 142 (932)
T KOG2053|consen 100 YERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPK 142 (932)
T ss_pred HHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 7777664 3556666666677777766643 4555554443
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.008 Score=55.93 Aligned_cols=171 Identities=9% Similarity=-0.035 Sum_probs=105.1
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCC--CCh-h---HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh--hhHHHHHHHHh
Q 048321 386 LIDMYSKCGSIGDARELFYALPE--KIV-V---SWTTMIAGCALNGEFVEALDLFHQLMELDLRPNR--VTFLAVLQACT 457 (641)
Q Consensus 386 li~~~~~~g~~~~A~~~~~~~~~--~~~-~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~ 457 (641)
....+...|++++|.+.|+.+.. |+. . ..-.++.++.+.+++++|...|++..+. .|+. ..+...+.+.+
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~--~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CcCCCchHHHHHHHHHh
Confidence 34445667888888888888765 222 1 2234556777888888888888888875 3443 34444444433
Q ss_pred c--cC---------------C---hHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCCCCCChh
Q 048321 458 H--TG---------------F---LEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMPIKSDAG 517 (641)
Q Consensus 458 ~--~g---------------~---~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~ 517 (641)
. .+ + ..+|...|+.+++.++ ...-..+|...+..+...--..
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP------------------~S~ya~~A~~rl~~l~~~la~~ 177 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYP------------------NSQYTTDATKRLVFLKDRLAKY 177 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCc------------------CChhHHHHHHHHHHHHHHHHHH
Confidence 2 10 1 2234455555554332 2233344444333322000000
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhHccCCCC---CccHHHHHHHHHhcCCchHHHHHHHHHH
Q 048321 518 IWGTLLCACKIHLNIEIGEYVAYCLFKLEPHS---AAPYVEMANKYALGGRWDGVANIRTMMK 577 (641)
Q Consensus 518 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~eA~~~~~~m~ 577 (641)
- ......|.+.|.+.-|..-++.+++--|+. .++...+++.|...|..++|.++...+.
T Consensus 178 e-~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 178 E-LSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred H-HHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 1 134456788999999999999999988874 4567788999999999999999887654
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.011 Score=50.13 Aligned_cols=132 Identities=8% Similarity=-0.053 Sum_probs=99.9
Q ss_pred CCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCC---ChhH
Q 048321 443 RPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKS---DAGI 518 (641)
Q Consensus 443 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p---~~~~ 518 (641)
.|+...-..+..+....|+..+|...|++.. ... +.-|....-.+..+....+++.+|...+++.- .+| .+..
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qal-sG~--fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQAL-SGI--FAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHh-ccc--cCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 5666666677778888888888888888876 333 45667777777788888888888888887753 222 2334
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048321 519 WGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 519 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
...+...+...|.++.|+..|+.++.-.|+ +..-...+..+.++|+.+||..-...+.+
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 455677888899999999999999998887 77888889999999999988776555443
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0001 Score=53.31 Aligned_cols=57 Identities=14% Similarity=0.112 Sum_probs=26.5
Q ss_pred cCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccH
Q 048321 497 KGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPY 553 (641)
Q Consensus 497 ~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 553 (641)
.|++++|+++|+++. .+.+..++..+..+|...|++++|...++++...+|+++..+
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 62 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQ 62 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 444444444444443 222344444455555555555555555555555555543333
|
... |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0029 Score=65.65 Aligned_cols=134 Identities=13% Similarity=0.003 Sum_probs=97.1
Q ss_pred CCCCChhhHHHHHHHHhcc-----CChHHHHHHHHHHHhhhCCCCCCC-hhHHHHHHHHhhcc--------CChHHHHHH
Q 048321 441 DLRPNRVTFLAVLQACTHT-----GFLEKGWAISIIQYDDKGISYNPE-LDHYSCMADLLGRK--------GKLKEALDF 506 (641)
Q Consensus 441 g~~p~~~t~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~--------g~~~~A~~~ 506 (641)
+.+.|...|..++.+.... +..+.|..+|+++.+ ..|+ ...|..+..++... ++++.+.+.
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~-----ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~ 406 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK-----SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTE 406 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH-----hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 3455667888888865432 237799999999996 4566 44455444333221 223455555
Q ss_pred HHhCC----CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048321 507 VQSMP----IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRNQ 580 (641)
Q Consensus 507 ~~~~~----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~~ 580 (641)
..... .+.++..+.++.......|++++|...++++++++|+ ...|..++.+|...|+.++|.+.+++.....
T Consensus 407 ~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 407 LDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred HHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 55532 2335567777777777789999999999999999995 7899999999999999999999998877654
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00037 Score=52.84 Aligned_cols=80 Identities=23% Similarity=0.314 Sum_probs=35.7
Q ss_pred cCChHHHHHHHHHHHHcCCC-CChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHH
Q 048321 424 NGEFVEALDLFHQLMELDLR-PNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKE 502 (641)
Q Consensus 424 ~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 502 (641)
.|+++.|+.+++++.+.... |+...+..+..++.+.|++++|..+++. .+..+ .+......++.++.+.|++++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~----~~~~~~~l~a~~~~~l~~y~e 76 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP----SNPDIHYLLARCLLKLGKYEE 76 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH----CHHHHHHHHHHHHHHTT-HHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC----CCHHHHHHHHHHHHHhCCHHH
Confidence 35555666666665554210 1222333345555555555555555555 21111 112222333455555555555
Q ss_pred HHHHHH
Q 048321 503 ALDFVQ 508 (641)
Q Consensus 503 A~~~~~ 508 (641)
|++.++
T Consensus 77 Ai~~l~ 82 (84)
T PF12895_consen 77 AIKALE 82 (84)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 555554
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.079 Score=54.42 Aligned_cols=217 Identities=12% Similarity=0.035 Sum_probs=118.7
Q ss_pred ccCchhHHhcccCCCChhhhHHHHHHHHHhCCChhHHHHHHHHhHhC-CCCCCcccHHHHHHHHhccCCchHHhHHHHHH
Q 048321 2 AVSSLPPRLNRIYRSSTINQWNSQIREAVNKNEAHKTLLLFRQMKQN-DIEPNNLTFPFIAKACAKLSDLIYSQMIHGHI 80 (641)
Q Consensus 2 a~~~a~~~f~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~~~~i~~~~ 80 (641)
.+++|.+..+..|+| . .|..+...-...-.++-|...|-+.... |++ ....| +.+|..-
T Consensus 678 gledA~qfiEdnPHp--r-LWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik----~vkrl-------------~~i~s~~ 737 (1189)
T KOG2041|consen 678 GLEDAIQFIEDNPHP--R-LWRLLAEYALFKLALDTAEHAFVRCGDYAGIK----LVKRL-------------RTIHSKE 737 (1189)
T ss_pred chHHHHHHHhcCCch--H-HHHHHHHHHHHHHhhhhHhhhhhhhccccchh----HHHHh-------------hhhhhHH
Confidence 466777777766654 2 5666666555555555555554433221 111 00000 0111111
Q ss_pred hhccC--cCCCChhHHHHHhhccCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC----hhhHHHHHHHHhcc
Q 048321 81 VKSPF--VKCDRLDCAYKIFDEMAVRDVASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQAD----FVTVMGLTQAAIHA 154 (641)
Q Consensus 81 ~~~~~--~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~----~~t~~~ll~~~~~~ 154 (641)
.+..- +-.|++++|.+++-.+.++|.. |..+.+-|++-.+.++++.= |-..| ...|+.+-..+...
T Consensus 738 ~q~aei~~~~g~feeaek~yld~drrDLA-----ielr~klgDwfrV~qL~r~g---~~d~dD~~~e~A~r~ig~~fa~~ 809 (1189)
T KOG2041|consen 738 QQRAEISAFYGEFEEAEKLYLDADRRDLA-----IELRKKLGDWFRVYQLIRNG---GSDDDDEGKEDAFRNIGETFAEM 809 (1189)
T ss_pred HHhHhHhhhhcchhHhhhhhhccchhhhh-----HHHHHhhhhHHHHHHHHHcc---CCCcchHHHHHHHHHHHHHHHHH
Confidence 11000 3458999999999999888753 56677778887777766531 11111 23466666666666
Q ss_pred CChhHHHHHHHHHHHHcCCCChhHHHHHHHHhHcCCChhHHHHHHhcccCCCCCchhHHHHHHHHhcCCCchHHHHHHHH
Q 048321 155 KHLSLLKSVHSFGIHIGVDADVSVCNTWISSYAKCDDLKMAELVFCGIEERLRTVVSWNSMVAGCTYGDKFDDSLNFYRH 234 (641)
Q Consensus 155 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 234 (641)
..++.|.+.+...-. ....+.++.+..++++-+.+-..+++ +....-.+...+...|.-++|.+.|-+
T Consensus 810 ~~We~A~~yY~~~~~---------~e~~~ecly~le~f~~LE~la~~Lpe---~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 810 MEWEEAAKYYSYCGD---------TENQIECLYRLELFGELEVLARTLPE---DSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred HHHHHHHHHHHhccc---------hHhHHHHHHHHHhhhhHHHHHHhcCc---ccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 666776666654321 12345666666666666666666655 455566677777777777777776643
Q ss_pred HHHCCCCCChhhHHHHHHHhcCCCchHHHHHHH
Q 048321 235 MMYNGFRLDVTTVVSLLSSFVCPEALVQGRLVH 267 (641)
Q Consensus 235 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 267 (641)
- +. | ...+..|...+++.+|.++-
T Consensus 878 ~---s~-p-----kaAv~tCv~LnQW~~avela 901 (1189)
T KOG2041|consen 878 R---SL-P-----KAAVHTCVELNQWGEAVELA 901 (1189)
T ss_pred c---cC-c-----HHHHHHHHHHHHHHHHHHHH
Confidence 2 11 1 12334455555555555443
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00025 Score=51.38 Aligned_cols=65 Identities=15% Similarity=0.171 Sum_probs=54.3
Q ss_pred ChhHHHHHHHHhhccCChHHHHHHHHhCC-CCC-ChhHHHHHHHHHHHcC-CHHHHHHHHHHhHccCC
Q 048321 483 ELDHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHL-NIEIGEYVAYCLFKLEP 547 (641)
Q Consensus 483 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p 547 (641)
+...|..++..+.+.|++++|+..|++.. ..| ++..|..+..++...| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 35677888888888999999999888866 444 5668888888999999 79999999999999988
|
... |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.035 Score=56.31 Aligned_cols=183 Identities=17% Similarity=0.165 Sum_probs=100.2
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH
Q 048321 267 HSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGICDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLV 346 (641)
Q Consensus 267 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 346 (641)
++++.+.|-.|+... +...++-.|++.+|-++|.+ +|....|+++|.+|+--
T Consensus 623 L~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~------------------~G~enRAlEmyTDlRMF------- 674 (1081)
T KOG1538|consen 623 LEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR------------------SGHENRALEMYTDLRMF------- 674 (1081)
T ss_pred HHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH------------------cCchhhHHHHHHHHHHH-------
Confidence 445566665566543 33445667888888888754 56666777777766421
Q ss_pred HHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCC
Q 048321 347 TVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKIVVSWTTMIAGCALNGE 426 (641)
Q Consensus 347 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 426 (641)
-..+-+...|..++-..+.+.-.+. ..+..-=.+...++...|+.++|..+ +..+|-
T Consensus 675 ---D~aQE~~~~g~~~eKKmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i------------------~~d~gW 731 (1081)
T KOG1538|consen 675 ---DYAQEFLGSGDPKEKKMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEI------------------CGDHGW 731 (1081)
T ss_pred ---HHHHHHhhcCChHHHHHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhh------------------hhcccH
Confidence 1223334444444433333322210 00100112334555666766666543 233444
Q ss_pred hHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHH
Q 048321 427 FVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDF 506 (641)
Q Consensus 427 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 506 (641)
.+.++++-+++-. .+..+...+..-+.+...+.-|-++|..|-. ...++++....+++++|..+
T Consensus 732 ~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD------------~ksiVqlHve~~~W~eAFal 795 (1081)
T KOG1538|consen 732 VDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLAAEIFLKMGD------------LKSLVQLHVETQRWDEAFAL 795 (1081)
T ss_pred HHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchHHHHHHHhcc------------HHHHhhheeecccchHhHhh
Confidence 4444444444432 2334555555555566667777778877653 23467788888888888888
Q ss_pred HHhCC-CCCCh
Q 048321 507 VQSMP-IKSDA 516 (641)
Q Consensus 507 ~~~~~-~~p~~ 516 (641)
-++.| ..||+
T Consensus 796 Ae~hPe~~~dV 806 (1081)
T KOG1538|consen 796 AEKHPEFKDDV 806 (1081)
T ss_pred hhhCccccccc
Confidence 88877 55554
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0043 Score=52.57 Aligned_cols=101 Identities=17% Similarity=0.143 Sum_probs=91.5
Q ss_pred CCCChhHHHHHHHHhhccCChHHHHHHHHhCC---CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCC--CCccHH
Q 048321 480 YNPELDHYSCMADLLGRKGKLKEALDFVQSMP---IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPH--SAAPYV 554 (641)
Q Consensus 480 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~ 554 (641)
+.|++..--.|...+.+.|+..||...|++.. +--|......+..+....++...|...++.+.+-+|. .|....
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 67999999999999999999999999999976 5668888999999999999999999999999999885 577889
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhCC
Q 048321 555 EMANKYALGGRWDGVANIRTMMKRNQ 580 (641)
Q Consensus 555 ~l~~~~~~~g~~~eA~~~~~~m~~~~ 580 (641)
.++.+|...|++++|+.-++...+.-
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~y 190 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYY 190 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhC
Confidence 99999999999999999999887643
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.14 Score=49.08 Aligned_cols=281 Identities=19% Similarity=0.158 Sum_probs=182.8
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHhcC---CCCCcchHHHHHHH--HHhCCChhHHHHHHHHHHHcCCCCCHH--HHHHHH
Q 048321 282 INTLISMYSK--CGDIDSARVLFDGI---CDRTRVSWTAMISG--YAQKGDLDEALRLFFAMEAAGELPDLV--TVLSMI 352 (641)
Q Consensus 282 ~~~li~~~~~--~g~~~~A~~~~~~~---~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~~~~p~~~--t~~~ll 352 (641)
|.+|-.++.. .|+-..|.+.-.+- ...|....-.++.+ -.-.|+++.|.+-|+.|... |... -+..|.
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLy 161 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLY 161 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHH
Confidence 4444444333 45666666655433 23344444444432 34478999999999998752 3322 233444
Q ss_pred HHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CChh--HHHHHHHHHH---
Q 048321 353 SGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE-----KIVV--SWTTMIAGCA--- 422 (641)
Q Consensus 353 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~--~~~~li~~~~--- 422 (641)
-..-+.|+.+.|.++-+..-..- +.-...+.+.+...|..|+++.|+++.+.-.. +++. .--.|+.+-.
T Consensus 162 leAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ 240 (531)
T COG3898 162 LEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL 240 (531)
T ss_pred HHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Confidence 44567888888888887776543 33456788899999999999999999986543 4432 1112222111
Q ss_pred HcCChHHHHHHHHHHHHcCCCCChh-hHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChH
Q 048321 423 LNGEFVEALDLFHQLMELDLRPNRV-TFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLK 501 (641)
Q Consensus 423 ~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 501 (641)
-.-+...|...-.+..+ +.||-+ .-.....++.+.|++.++-.+++.+-+ ..|.+..+.. ..+.|.|+.
T Consensus 241 ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK-----~ePHP~ia~l--Y~~ar~gdt- 310 (531)
T COG3898 241 LDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWK-----AEPHPDIALL--YVRARSGDT- 310 (531)
T ss_pred hcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHh-----cCCChHHHHH--HHHhcCCCc-
Confidence 12345666666555554 578876 444455689999999999999999885 3455555443 334566653
Q ss_pred HHHHHHHhCC----CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhc-CCchHHHHHHHH
Q 048321 502 EALDFVQSMP----IKS-DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALG-GRWDGVANIRTM 575 (641)
Q Consensus 502 ~A~~~~~~~~----~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~eA~~~~~~ 575 (641)
+++-+++.. .+| +..+..++..+-...|++..|..-.+.+....|. .+.|.+|+++-... |+-.++...+-+
T Consensus 311 -a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAq 388 (531)
T COG3898 311 -ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQ 388 (531)
T ss_pred -HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHH
Confidence 222222221 345 4557777888888999999999999999999998 78999999997765 998888888766
Q ss_pred HHh
Q 048321 576 MKR 578 (641)
Q Consensus 576 m~~ 578 (641)
...
T Consensus 389 av~ 391 (531)
T COG3898 389 AVK 391 (531)
T ss_pred Hhc
Confidence 543
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0012 Score=63.37 Aligned_cols=83 Identities=11% Similarity=-0.001 Sum_probs=73.0
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCceeEEEECCEE
Q 048321 517 GIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRNQVKKFPGQSLFHINGKT 596 (641)
Q Consensus 517 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~~~~~~~~~s~~~~~~~~ 596 (641)
.++..|...|.+.+++..|++...++++++|+|..+.+.-+.+|...|.++.|+..|+++.+.
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~----------------- 320 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL----------------- 320 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh-----------------
Confidence 456777778889999999999999999999999999999999999999999999999998863
Q ss_pred EEEeeCCCCCCChhcHHHHHHHHHHHHHH
Q 048321 597 CTFTAEDRYHAESELTYPVLDCLALHSRE 625 (641)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 625 (641)
.|.+..|...|..+.+++++
T Consensus 321 ---------~P~Nka~~~el~~l~~k~~~ 340 (397)
T KOG0543|consen 321 ---------EPSNKAARAELIKLKQKIRE 340 (397)
T ss_pred ---------CCCcHHHHHHHHHHHHHHHH
Confidence 67788888888887776654
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0026 Score=49.23 Aligned_cols=79 Identities=11% Similarity=0.016 Sum_probs=65.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCC-CCChhhHHHHHHHHhccCC--------hhHHHHHHHHHHHHcCCCChhHHH
Q 048321 110 NAMLVGFAQMGFLENVLRLFYNMRLVGI-QADFVTVMGLTQAAIHAKH--------LSLLKSVHSFGIHIGVDADVSVCN 180 (641)
Q Consensus 110 ~~li~~~~~~g~~~~a~~l~~~m~~~g~-~p~~~t~~~ll~~~~~~~~--------~~~a~~~~~~~~~~~~~~~~~~~~ 180 (641)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++++.++..- .-....+++.|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4456667777999999999999999999 9999999999999876532 345667888999999999999999
Q ss_pred HHHHHhHc
Q 048321 181 TWISSYAK 188 (641)
Q Consensus 181 ~ll~~~~~ 188 (641)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 98877654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.18 Score=48.91 Aligned_cols=111 Identities=14% Similarity=0.085 Sum_probs=89.2
Q ss_pred hhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCCCCCChhHHHHHHHHH
Q 048321 447 VTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCAC 526 (641)
Q Consensus 447 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~ 526 (641)
.+.+..+.-|...|....|.++-. ++. .|+...|...+.+|+..|+|++-.++... +..+..|...+.+|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k----~Fk---v~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKK----EFK---VPDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHH----HcC---CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHH
Confidence 466666777788898888877754 443 48999999999999999999998887654 34568899999999
Q ss_pred HHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHH
Q 048321 527 KIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMM 576 (641)
Q Consensus 527 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m 576 (641)
...|+..+|..+..++ .+...+..|.+.|.|.+|.+.--+.
T Consensus 248 ~~~~~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHCCCHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 9999999999888771 1256789999999999998875443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.056 Score=51.67 Aligned_cols=179 Identities=16% Similarity=0.144 Sum_probs=105.3
Q ss_pred cCCHHHHHHHHhhCCC---CChhHHHHHHHH--HHHcCChHHHHHHHHHHHHcCCCCChh--hHHHHHHHHhccCChHHH
Q 048321 393 CGSIGDARELFYALPE---KIVVSWTTMIAG--CALNGEFVEALDLFHQLMELDLRPNRV--TFLAVLQACTHTGFLEKG 465 (641)
Q Consensus 393 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~g~~~~a 465 (641)
.|+-..|.+.-.+..+ .|....-.++.+ -.-.|+++.|.+-|+-|.. .|... -...|.-.-.+.|..+.|
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHHHH
Confidence 4555555555444332 233333233322 2235777777777777765 23221 233333344566777777
Q ss_pred HHHHHHHHhhhCCCCCCC-hhHHHHHHHHhhccCChHHHHHHHHhCC----CCCChh--HHHHHHHH---HHHcCCHHHH
Q 048321 466 WAISIIQYDDKGISYNPE-LDHYSCMADLLGRKGKLKEALDFVQSMP----IKSDAG--IWGTLLCA---CKIHLNIEIG 535 (641)
Q Consensus 466 ~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~~~--~~~~ll~~---~~~~g~~~~a 535 (641)
+++-+..... -|. .-.+.+.+...+..|+++.|+++++.-. ..++.. .-..|+.+ -....+...|
T Consensus 174 r~yAe~Aa~~-----Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~A 248 (531)
T COG3898 174 RHYAERAAEK-----APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASA 248 (531)
T ss_pred HHHHHHHHhh-----ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHH
Confidence 7776666542 233 4456667777777777777777776643 444433 11222222 1233467777
Q ss_pred HHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 536 EYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 536 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
.....+..++.|+-...-+.-+..|.+.|+..++..+++.+=+.
T Consensus 249 r~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ 292 (531)
T COG3898 249 RDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA 292 (531)
T ss_pred HHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc
Confidence 77888888888887777777778888888888888887776543
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0015 Score=61.14 Aligned_cols=94 Identities=14% Similarity=0.037 Sum_probs=62.5
Q ss_pred HHHHHHHHhhccCChHHHHHHHHhCC-CCCCh----hHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCC---CccHHHHH
Q 048321 486 HYSCMADLLGRKGKLKEALDFVQSMP-IKSDA----GIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHS---AAPYVEMA 557 (641)
Q Consensus 486 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~ 557 (641)
.|..-+..+.+.|++++|...|+... ..|+. ..+.-+...+...|+++.|...|+++++..|++ +.++..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 34444444455677777777776655 33432 355566677777788888888888887776664 44555667
Q ss_pred HHHHhcCCchHHHHHHHHHHhC
Q 048321 558 NKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 558 ~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
.+|...|++++|.++++++.+.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 7777888888888887777654
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0031 Score=62.73 Aligned_cols=118 Identities=14% Similarity=0.059 Sum_probs=84.0
Q ss_pred ChhHHHHHHHHhHcCCChhHHHHHHhcccCCC----CCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCCCCChhhHHHH
Q 048321 175 DVSVCNTWISSYAKCDDLKMAELVFCGIEERL----RTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVVSL 250 (641)
Q Consensus 175 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 250 (641)
+......+++......+++.+..++-+....+ .-..+.+++|+.|.+.|..++++.+++.=..-|+-||.+|++.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 33344444555555555555655555444331 11344568888888888888888888888888988999999999
Q ss_pred HHHhcCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 048321 251 LSSFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKC 292 (641)
Q Consensus 251 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 292 (641)
|..+.+.|++..|.++...|...+...+..++..-+.+|.+.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999888888887666666666555555555
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.01 Score=49.78 Aligned_cols=90 Identities=7% Similarity=-0.105 Sum_probs=51.4
Q ss_pred HHHHHhccCChHHHHHHHHHHHhhhCCCCCCC-hhHHHHHHHHhhccCChHHHHHHHHhCC-C-CCChhHHHHHHHHHHH
Q 048321 452 VLQACTHTGFLEKGWAISIIQYDDKGISYNPE-LDHYSCMADLLGRKGKLKEALDFVQSMP-I-KSDAGIWGTLLCACKI 528 (641)
Q Consensus 452 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~ll~~~~~ 528 (641)
+..-+...|++++|..+|+.+.. +.|. ...|-.|.-++-..|++++|++.|.... . +.|+..+-.+..++..
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~-----~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTI-----YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH-----hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 33344555666666666666553 2233 4445556666666666666666666643 2 2344555566666666
Q ss_pred cCCHHHHHHHHHHhHccC
Q 048321 529 HLNIEIGEYVAYCLFKLE 546 (641)
Q Consensus 529 ~g~~~~a~~~~~~~~~~~ 546 (641)
.|+.+.|++.|+.++..-
T Consensus 116 lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 116 CDNVCYAIKALKAVVRIC 133 (157)
T ss_pred cCCHHHHHHHHHHHHHHh
Confidence 666666666666666543
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0046 Score=47.92 Aligned_cols=80 Identities=16% Similarity=0.091 Sum_probs=66.0
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHhcCcC--------chHHHHHHHHHHHHcCCCCchhHH
Q 048321 313 WTAMISGYAQKGDLDEALRLFFAMEAAGE-LPDLVTVLSMISGCGQSG--------ALELGKWFDNYACSGGLKDNVMVC 383 (641)
Q Consensus 313 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~ 383 (641)
-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-....+++.++..+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34456667777999999999999999999 899999999999866543 345667889999999999999999
Q ss_pred HHHHHHHHh
Q 048321 384 NALIDMYSK 392 (641)
Q Consensus 384 ~~li~~~~~ 392 (641)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999887765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.03 Score=53.90 Aligned_cols=99 Identities=15% Similarity=-0.017 Sum_probs=63.6
Q ss_pred hccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCCCCCChhHHHHHHHH--HHHcCCHHH
Q 048321 457 THTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCA--CKIHLNIEI 534 (641)
Q Consensus 457 ~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~--~~~~g~~~~ 534 (641)
.+.|.+..|.+.|...+...+.+.+|+...|.....+..+.|++++|+.-.+....-.+..++..+..+ +...+++++
T Consensus 260 fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~ 339 (486)
T KOG0550|consen 260 FKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEE 339 (486)
T ss_pred hhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777775444445666677777777788888888888877776522122233333333 445678888
Q ss_pred HHHHHHHhHccCCCCCccHHHH
Q 048321 535 GEYVAYCLFKLEPHSAAPYVEM 556 (641)
Q Consensus 535 a~~~~~~~~~~~p~~~~~~~~l 556 (641)
|.+.++++.+.+.+ ...-..+
T Consensus 340 AV~d~~~a~q~~~s-~e~r~~l 360 (486)
T KOG0550|consen 340 AVEDYEKAMQLEKD-CEIRRTL 360 (486)
T ss_pred HHHHHHHHHhhccc-cchHHHH
Confidence 88888888877654 3433333
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0013 Score=64.69 Aligned_cols=65 Identities=14% Similarity=-0.056 Sum_probs=45.5
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCcc---HHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 515 DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAP---YVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 515 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
+...|..+..+|...|++++|+..++++++++|++..+ |..++.+|...|+.++|.+.+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45567777777777777777777777777777776643 777777777777777777777666653
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0093 Score=59.40 Aligned_cols=117 Identities=12% Similarity=0.015 Sum_probs=64.0
Q ss_pred CCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHc--CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC----CChhHHH
Q 048321 342 LPDLVTVLSMISGCGQSGALELGKWFDNYACSG--GLKDNVMVCNALIDMYSKCGSIGDARELFYALPE----KIVVSWT 415 (641)
Q Consensus 342 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~ 415 (641)
+.+...+..++..+....+++.+..++-..... ....-+.+..++|+.|.+.|..+.+..+++.=.. +|..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 445555555566665555566665555555442 1112233344666666666666666666655433 5556666
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhc
Q 048321 416 TMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTH 458 (641)
Q Consensus 416 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 458 (641)
.|+..+.+.|++..|.++...|...+...+..|+...+.+|.+
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 6666666666666666666666555544555555544444443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0069 Score=58.19 Aligned_cols=134 Identities=13% Similarity=0.103 Sum_probs=83.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHH----cCCCCChh--hHHHHHHHHhcc-CChHHHHHHHHHHHhhhCCCCCCC---
Q 048321 414 WTTMIAGCALNGEFVEALDLFHQLME----LDLRPNRV--TFLAVLQACTHT-GFLEKGWAISIIQYDDKGISYNPE--- 483 (641)
Q Consensus 414 ~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~--t~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~~~p~--- 483 (641)
|......|.+. ++++|++.+++..+ .| .|+.. .+..+...|... |++++|.+.|++..+-+. ....
T Consensus 78 ~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G-~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~--~e~~~~~ 153 (282)
T PF14938_consen 78 YEEAANCYKKG-DPDEAIECYEKAIEIYREAG-RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYE--QEGSPHS 153 (282)
T ss_dssp HHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHH--HTT-HHH
T ss_pred HHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--HCCChhh
Confidence 33344444333 66666666666543 22 33332 555666678888 899999999999886544 2222
Q ss_pred -hhHHHHHHHHhhccCChHHHHHHHHhCC---C-----CCChh-HHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCc
Q 048321 484 -LDHYSCMADLLGRKGKLKEALDFVQSMP---I-----KSDAG-IWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAA 551 (641)
Q Consensus 484 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~-----~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 551 (641)
...+..++..+.+.|++++|.++|++.. . +.+.. .+...+-.+...||...|.+.+++....+|.-..
T Consensus 154 a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~ 231 (282)
T PF14938_consen 154 AAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFAS 231 (282)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTT
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 3456677889999999999999998854 1 11111 2222333456679999999999999999986433
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00057 Score=44.04 Aligned_cols=42 Identities=17% Similarity=0.222 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHH
Q 048321 517 GIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMAN 558 (641)
Q Consensus 517 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 558 (641)
.+|..+..++...|++++|+++++++++.+|+|+..+..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467888999999999999999999999999999988887764
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0031 Score=50.87 Aligned_cols=85 Identities=15% Similarity=-0.060 Sum_probs=57.3
Q ss_pred HHHhhccCChHHHHHHHHhCC-C---CCC-hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCC---CCccHHHHHHHHHh
Q 048321 491 ADLLGRKGKLKEALDFVQSMP-I---KSD-AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPH---SAAPYVEMANKYAL 562 (641)
Q Consensus 491 ~~~~~~~g~~~~A~~~~~~~~-~---~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 562 (641)
..++-..|+.++|+.+|++.. . .++ ...+-.+.++++..|++++|..++++...-.|+ +......++.++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 345556667777777776644 1 111 224556677788888888888888888777676 55566667778888
Q ss_pred cCCchHHHHHHHH
Q 048321 563 GGRWDGVANIRTM 575 (641)
Q Consensus 563 ~g~~~eA~~~~~~ 575 (641)
.|+++||.+.+-.
T Consensus 88 ~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 88 LGRPKEALEWLLE 100 (120)
T ss_pred CCCHHHHHHHHHH
Confidence 8888888876644
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.012 Score=56.35 Aligned_cols=139 Identities=12% Similarity=0.111 Sum_probs=84.2
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 048321 312 SWTAMISGYAQKGDLDEALRLFFAMEAAGE-LPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMY 390 (641)
Q Consensus 312 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 390 (641)
+|..++...-+.+..+.|..+|.+.++.+. ..+.......+. +...++.+.|..||+...+. ++.+...+...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 466666666666667777777777664321 122222222222 23345666677777777764 356677777788888
Q ss_pred HhcCCHHHHHHHHhhCCC--C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 048321 391 SKCGSIGDARELFYALPE--K----IVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQ 454 (641)
Q Consensus 391 ~~~g~~~~A~~~~~~~~~--~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 454 (641)
.+.++.+.|+.+|++... + -...|...+..-.+.|+.+.+.++.+++.+. -|+...+..+..
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ 148 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSD 148 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHC
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHH
Confidence 888888888888887665 1 2247777777777788888888888777774 455444444444
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0013 Score=48.15 Aligned_cols=63 Identities=13% Similarity=0.100 Sum_probs=51.2
Q ss_pred HHhhccCChHHHHHHHHhCC-CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHH
Q 048321 492 DLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYV 554 (641)
Q Consensus 492 ~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 554 (641)
..|.+.+++++|+++++.+. ..| ++..|......+...|+++.|...++++++..|+++....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 56778889999999998876 444 5667888888889999999999999999999998655443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.014 Score=47.08 Aligned_cols=91 Identities=15% Similarity=0.151 Sum_probs=64.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCh--hhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCC-ChhHHHHHHHH
Q 048321 417 MIAGCALNGEFVEALDLFHQLMELDLRPNR--VTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNP-ELDHYSCMADL 493 (641)
Q Consensus 417 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p-~~~~~~~l~~~ 493 (641)
+..++-..|+.++|+.+|++....|..... ..+..+.+.+...|++++|..+++.....++ -.+ +......+.-+
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p--~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFP--DDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC--CccccHHHHHHHHHH
Confidence 445667789999999999999988866543 3666677788889999999999998886543 111 12222334456
Q ss_pred hhccCChHHHHHHHHh
Q 048321 494 LGRKGKLKEALDFVQS 509 (641)
Q Consensus 494 ~~~~g~~~~A~~~~~~ 509 (641)
+...|+.++|++.+-.
T Consensus 85 L~~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLE 100 (120)
T ss_pred HHHCCCHHHHHHHHHH
Confidence 7788888888887654
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.57 Score=49.03 Aligned_cols=117 Identities=13% Similarity=0.001 Sum_probs=92.6
Q ss_pred CCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCCCCCChhHHH
Q 048321 441 DLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWG 520 (641)
Q Consensus 441 g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~ 520 (641)
|..-...+.+--+.-+...|...+|.++-.+.. -||...|..-+.+++..+++++-+++-+++. .+.-|.
T Consensus 679 ~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-------ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~ 748 (829)
T KOG2280|consen 679 GGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-------IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYL 748 (829)
T ss_pred ccccccCcHHHHHHHHHHccchHHHHHHHHhcC-------CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCch
Confidence 333444566666777888899999988866543 5899999999999999999999988888765 356788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHH
Q 048321 521 TLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTM 575 (641)
Q Consensus 521 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~ 575 (641)
-...+|.+.|+.++|.+++-+.-.+ .-.+.+|.+.|++.||.+.-=+
T Consensus 749 PFVe~c~~~~n~~EA~KYiprv~~l--------~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 749 PFVEACLKQGNKDEAKKYIPRVGGL--------QEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred hHHHHHHhcccHHHHhhhhhccCCh--------HHHHHHHHHhccHHHHHHHHHH
Confidence 8899999999999999887654332 2678999999999999987533
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0061 Score=53.54 Aligned_cols=126 Identities=11% Similarity=0.094 Sum_probs=82.5
Q ss_pred hHHhccc--CCCChhhhHHHHHHHHHh-----CCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHhHHHHH
Q 048321 7 PPRLNRI--YRSSTINQWNSQIREAVN-----KNEAHKTLLLFRQMKQNDIEPNNLTFPFIAKACAKLSDLIYSQMIHGH 79 (641)
Q Consensus 7 ~~~f~~~--~~~~~~~~~~~li~~~~~-----~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~i~~~ 79 (641)
...|+.. ..++-. +|..+|..|.+ +|.++=....+..|.+-|+.-|..+|+.||..+-+ |.+
T Consensus 34 ~~~f~~~~~~~k~K~-~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~f--------- 102 (228)
T PF06239_consen 34 EELFERAPGQAKDKA-TFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKF--------- 102 (228)
T ss_pred HHHHHHHhhccccHH-HHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCc---------
Confidence 3455554 445666 78888888775 36666667778888888998899999998887743 111
Q ss_pred HhhccCcCCCChhHHHHHhhccCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCh-h
Q 048321 80 IVKSPFVKCDRLDCAYKIFDEMAVRDVASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHL-S 158 (641)
Q Consensus 80 ~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~-~ 158 (641)
..+| .+.++-.-| -.+-+-|++++++|...|+.||..|+..++..+++.+.. .
T Consensus 103 ----------------------vp~n--~fQ~~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~ 156 (228)
T PF06239_consen 103 ----------------------VPRN--FFQAEFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMK 156 (228)
T ss_pred ----------------------cccc--HHHHHhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHH
Confidence 0000 111111111 234577899999999999999999999999999876542 3
Q ss_pred HHHHHHHHHHH
Q 048321 159 LLKSVHSFGIH 169 (641)
Q Consensus 159 ~a~~~~~~~~~ 169 (641)
...++.=+|.+
T Consensus 157 K~~rmmYWmpk 167 (228)
T PF06239_consen 157 KYRRMMYWMPK 167 (228)
T ss_pred HHHHHHHHHHH
Confidence 33444434433
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.048 Score=49.17 Aligned_cols=139 Identities=10% Similarity=0.005 Sum_probs=104.0
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCch-----hHHHHH
Q 048321 312 SWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNV-----MVCNAL 386 (641)
Q Consensus 312 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l 386 (641)
..+.++..+...|.+.-.+.++++.++.....++.....+.+.-.+.|+.+.|...++...+..-..+. .+....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 446677777788889999999999998777778888888888889999999999999988764333333 333334
Q ss_pred HHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHH
Q 048321 387 IDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAV 452 (641)
Q Consensus 387 i~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 452 (641)
...|.-.+++..|...|.++.. .|++.-|.-.-++.-.|+..+|++..+.|.+. .|...+-+++
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~ 325 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESV 325 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhH
Confidence 4456667888999999988776 35566666555566678999999999999986 5655544433
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.29 Score=47.03 Aligned_cols=98 Identities=13% Similarity=0.105 Sum_probs=48.9
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHcCCC-----CCHH-HHHHHHHHhcCcCchHHHHHHHHHHHHc--CCCCc--hhHH
Q 048321 314 TAMISGYAQKGDLDEALRLFFAMEAAGEL-----PDLV-TVLSMISGCGQSGALELGKWFDNYACSG--GLKDN--VMVC 383 (641)
Q Consensus 314 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~-----p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~--~~~~ 383 (641)
..+...+.+.|++++|.++|++....... .+.. .|...+-.+...|+...|...++..... ++..+ ..+.
T Consensus 159 ~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~ 238 (282)
T PF14938_consen 159 LKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFL 238 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHH
Confidence 34455566666777777777666543221 1111 1222222344456666666666665542 22222 3455
Q ss_pred HHHHHHHHh--cCCHHHHHHHHhhCCCCCh
Q 048321 384 NALIDMYSK--CGSIGDARELFYALPEKIV 411 (641)
Q Consensus 384 ~~li~~~~~--~g~~~~A~~~~~~~~~~~~ 411 (641)
..|+++|-. ...++.|..-|+.+.+-|.
T Consensus 239 ~~l~~A~~~~D~e~f~~av~~~d~~~~ld~ 268 (282)
T PF14938_consen 239 EDLLEAYEEGDVEAFTEAVAEYDSISRLDN 268 (282)
T ss_dssp HHHHHHHHTT-CCCHHHHCHHHTTSS---H
T ss_pred HHHHHHHHhCCHHHHHHHHHHHcccCccHH
Confidence 556666643 3456777777777776554
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.087 Score=47.59 Aligned_cols=176 Identities=9% Similarity=-0.068 Sum_probs=114.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCC--C--------hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHH
Q 048321 383 CNALIDMYSKCGSIGDARELFYALPEK--I--------VVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAV 452 (641)
Q Consensus 383 ~~~li~~~~~~g~~~~A~~~~~~~~~~--~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 452 (641)
+++|.+.+.-..-+++-...|+.-..+ . ...-+.++..+.-.|.+.-.+.++++.++..-+-+......+
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 345555554444444444444433221 1 234456777777788899999999999987545566777788
Q ss_pred HHHHhccCChHHHHHHHHHHHhhhCC--CCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCC-ChhHHHHHHHHHHH
Q 048321 453 LQACTHTGFLEKGWAISIIQYDDKGI--SYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKI 528 (641)
Q Consensus 453 l~~~~~~g~~~~a~~~~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~ 528 (641)
.+.-.+.|+.+.|...|+...+..+. ++.-..-....+...|.-+.++.+|...+.+++ ..| |+...+.-.-...-
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY 298 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY 298 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence 88888999999999999977754440 022222223333455667778889999998887 333 45555554444556
Q ss_pred cCCHHHHHHHHHHhHccCCCCCccHHHHHH
Q 048321 529 HLNIEIGEYVAYCLFKLEPHSAAPYVEMAN 558 (641)
Q Consensus 529 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 558 (641)
.|+...|.+..+.+.+..|....+-..+.+
T Consensus 299 lg~l~DAiK~~e~~~~~~P~~~l~es~~~n 328 (366)
T KOG2796|consen 299 LGKLKDALKQLEAMVQQDPRHYLHESVLFN 328 (366)
T ss_pred HHHHHHHHHHHHHHhccCCccchhhhHHHH
Confidence 789999999999999999975444333333
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.1 Score=48.56 Aligned_cols=54 Identities=17% Similarity=0.094 Sum_probs=31.6
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCC--Cc-ch---HHHHHHHHHhCCChhHHHHHHHHHHHc
Q 048321 286 ISMYSKCGDIDSARVLFDGICDR--TR-VS---WTAMISGYAQKGDLDEALRLFFAMEAA 339 (641)
Q Consensus 286 i~~~~~~g~~~~A~~~~~~~~~~--~~-~~---~~~li~~~~~~g~~~~A~~~~~~m~~~ 339 (641)
...+.+.|++++|.+.|+.+... +. .. .-.++.+|.+.+++++|...|++..+.
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 33445567777777777766322 11 11 123455667777777777777777665
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.023 Score=53.29 Aligned_cols=101 Identities=11% Similarity=-0.042 Sum_probs=62.4
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCC-hhHHHHHHHHhhccCChHHHHHHHHhCC-CCCC----hhHHHH
Q 048321 448 TFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPE-LDHYSCMADLLGRKGKLKEALDFVQSMP-IKSD----AGIWGT 521 (641)
Q Consensus 448 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~ 521 (641)
.|...+......|++++|...|+.+.+.++ -.+- ...+..++.+|...|++++|...|+.+. ..|+ ...+..
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP--~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYP--DSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCc--CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 344433333445666777766766665443 1110 2345556667777777777777776654 2222 334555
Q ss_pred HHHHHHHcCCHHHHHHHHHHhHccCCCCC
Q 048321 522 LLCACKIHLNIEIGEYVAYCLFKLEPHSA 550 (641)
Q Consensus 522 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 550 (641)
+...+...|+.+.|...++++++..|++.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 56667788899999999999998888753
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.011 Score=46.97 Aligned_cols=89 Identities=16% Similarity=0.068 Sum_probs=75.4
Q ss_pred HHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCC----CccHHHHHHHHHhcCC
Q 048321 492 DLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHS----AAPYVEMANKYALGGR 565 (641)
Q Consensus 492 ~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~ 565 (641)
-+++..|++++|++.|.... .+.++..|+.-..+++-.|+.++|+.-+++++++.-+. ..+|+..+-+|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 46778899999999998876 44578899999999999999999999999999985432 2367888999999999
Q ss_pred chHHHHHHHHHHhCC
Q 048321 566 WDGVANIRTMMKRNQ 580 (641)
Q Consensus 566 ~~eA~~~~~~m~~~~ 580 (641)
-+.|+.-|+...+-|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 999999999887765
|
|
| >PF14432 DYW_deaminase: DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0014 Score=52.51 Aligned_cols=39 Identities=31% Similarity=0.419 Sum_probs=32.1
Q ss_pred ceeEEEECCEEEEEeeCCCCCCChhcHHHHHHHHHHHHHHccccCCCCCcc
Q 048321 586 GQSLFHINGKTCTFTAEDRYHAESELTYPVLDCLALHSREEAYSSHLKWIP 636 (641)
Q Consensus 586 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~g~~~~~~~~~ 636 (641)
|+||+++ |.|++||.+||+. .+..++...||+|+++.+.
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~ 40 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVG 40 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhC
Confidence 7899988 9999999999998 4556667778888877763
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.64 E-value=1.1 Score=46.94 Aligned_cols=341 Identities=14% Similarity=0.071 Sum_probs=159.9
Q ss_pred HcCCCCChhhHHH-----HHHHHhccCChhHHHHHHHHHHHHcCCCChhHHHHHHHHhHcCCC---hhHHHHHHhcccCC
Q 048321 134 LVGIQADFVTVMG-----LTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISSYAKCDD---LKMAELVFCGIEER 205 (641)
Q Consensus 134 ~~g~~p~~~t~~~-----ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~---~~~A~~~~~~~~~~ 205 (641)
.-|++.+..-|.. ++.-+...+.+..|.++-..+...-..- ..++.....-+.+..+ -+.+.++-+++...
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 3456665555544 3555556667777777766553211111 4555555555555432 22233333333332
Q ss_pred CCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCC----CCChhhHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchhH
Q 048321 206 LRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGF----RLDVTTVVSLLSSFVCPEALVQGRLVHSHGIHYGFDLDVSV 281 (641)
Q Consensus 206 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 281 (641)
.....+|..+.+.....|+.+-|..+++.=...+- -.+..-+...+.-+...|+.+...+++-++...- +...
T Consensus 504 ~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~ 580 (829)
T KOG2280|consen 504 LTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSS 580 (829)
T ss_pred CCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHH
Confidence 23456777777777788888888777654322211 0122333444444555555555555544443321 0000
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCC-CCcchHHHHHHHHHhCCChhHHHHHHH--HH----HHcCCCCCHHHHHHHHHH
Q 048321 282 INTLISMYSKCGDIDSARVLFDGICD-RTRVSWTAMISGYAQKGDLDEALRLFF--AM----EAAGELPDLVTVLSMISG 354 (641)
Q Consensus 282 ~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~--~m----~~~~~~p~~~t~~~ll~~ 354 (641)
......+...|..+|....+ .|..+ +-+.| +.++-.+++..|. .. ...|..|+..+ .-.+
T Consensus 581 ------l~~~l~~~p~a~~lY~~~~r~~~~~~---l~d~y-~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~---~a~~ 647 (829)
T KOG2280|consen 581 ------LFMTLRNQPLALSLYRQFMRHQDRAT---LYDFY-NQDDNHQALASFHLQASYAAETIEGRIPALKT---AANA 647 (829)
T ss_pred ------HHHHHHhchhhhHHHHHHHHhhchhh---hhhhh-hcccchhhhhhhhhhhhhhhhhhcccchhHHH---HHHH
Confidence 01111222333333333311 11110 11111 1222222222111 10 01122333322 2333
Q ss_pred hcCcCchH---HH-------HHHHHHHHH-cCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHH
Q 048321 355 CGQSGALE---LG-------KWFDNYACS-GGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKIVVSWTTMIAGCAL 423 (641)
Q Consensus 355 ~~~~~~~~---~a-------~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 423 (641)
|.+..... ++ ..+.+.+.. .|..-..-+.+--+.-+...|+-.+|.++-.+..-||-..|-.-+.+++.
T Consensus 648 ~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~ 727 (829)
T KOG2280|consen 648 FAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALAD 727 (829)
T ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHh
Confidence 33333211 11 111111111 12122222333334445566777777777777777777777777777777
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHH
Q 048321 424 NGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEA 503 (641)
Q Consensus 424 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 503 (641)
.+++++-+++-+.+. .+.-|.-...+|.+.|+.++|..++-+.. +. .-.+.+|.+.|++.+|
T Consensus 728 ~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~--------~l----~ekv~ay~~~~~~~eA 789 (829)
T KOG2280|consen 728 IKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVG--------GL----QEKVKAYLRVGDVKEA 789 (829)
T ss_pred hhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccC--------Ch----HHHHHHHHHhccHHHH
Confidence 777776655544332 14556666777777777777777654321 11 1456677777777777
Q ss_pred HHHHHh
Q 048321 504 LDFVQS 509 (641)
Q Consensus 504 ~~~~~~ 509 (641)
.++--+
T Consensus 790 ad~A~~ 795 (829)
T KOG2280|consen 790 ADLAAE 795 (829)
T ss_pred HHHHHH
Confidence 665443
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.013 Score=56.02 Aligned_cols=128 Identities=9% Similarity=0.015 Sum_probs=88.1
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHH---hhhCCCCC-CChhHHHHHHHHhhccCChHHHHHHHHhCC--------CCCC
Q 048321 448 TFLAVLQACTHTGFLEKGWAISIIQY---DDKGISYN-PELDHYSCMADLLGRKGKLKEALDFVQSMP--------IKSD 515 (641)
Q Consensus 448 t~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~p~ 515 (641)
.|..|-..|.-.|++++|+..++.-. +.+| -. .....++.+.+++.-.|+++.|.+.++... ....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efG--DrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vE 274 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFG--DRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVE 274 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhh--hHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHH
Confidence 45555556666788999887766433 3444 11 224467778888888999999998887643 1123
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHhHc----cCC--CCCccHHHHHHHHHhcCCchHHHHHHHHHH
Q 048321 516 AGIWGTLLCACKIHLNIEIGEYVAYCLFK----LEP--HSAAPYVEMANKYALGGRWDGVANIRTMMK 577 (641)
Q Consensus 516 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~p--~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~ 577 (641)
..+..+|.++|....+++.|+.+..+=+. ++. ....++..|++.|...|.-+.|..+.+.-.
T Consensus 275 AQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 275 AQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 34556788888888889999888765443 221 235678889999999999999988776543
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.026 Score=49.74 Aligned_cols=96 Identities=15% Similarity=0.175 Sum_probs=70.5
Q ss_pred HHHhhC--CCCChhHHHHHHHHHHH-----cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccC-------------
Q 048321 401 ELFYAL--PEKIVVSWTTMIAGCAL-----NGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTG------------- 460 (641)
Q Consensus 401 ~~~~~~--~~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g------------- 460 (641)
..|+.. ..++-.+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.||+.+=+..
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h 114 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH 114 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence 344444 34566666667766654 3667777778888888888888888888888776532
Q ss_pred ---ChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCC
Q 048321 461 ---FLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGK 499 (641)
Q Consensus 461 ---~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 499 (641)
.-+-|++++++|. .+| +.||.+++..+++.+++.+.
T Consensus 115 yp~Qq~c~i~lL~qME-~~g--V~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 115 YPRQQECAIDLLEQME-NNG--VMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred CcHHHHHHHHHHHHHH-HcC--CCCcHHHHHHHHHHhccccH
Confidence 3445788888888 788 88999999999888877665
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.031 Score=47.59 Aligned_cols=108 Identities=14% Similarity=0.080 Sum_probs=71.0
Q ss_pred hccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHH
Q 048321 457 THTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHLNIEIGE 536 (641)
Q Consensus 457 ~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 536 (641)
...|+.+.+...+..+...+...+-|+... ..-.......++.+- ......++..+...|+++.|.
T Consensus 17 ~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~~----~~~~~~l~~~~~~~~~~~~a~ 82 (146)
T PF03704_consen 17 ARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLRELY----LDALERLAEALLEAGDYEEAL 82 (146)
T ss_dssp HHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHHH----HHHHHHHHHHHHHTT-HHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHHH----HHHHHHHHHHHHhccCHHHHH
Confidence 455677777777777775543222233211 111122222222211 124566777888999999999
Q ss_pred HHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048321 537 YVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 537 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
..+++++..+|.+-..|..+..+|...|+..+|.+.++.+..
T Consensus 83 ~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 83 RLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988754
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.015 Score=55.68 Aligned_cols=258 Identities=13% Similarity=0.103 Sum_probs=143.5
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCChh----hHHHHHHHHhccCChhHHHHHHHHHHH----HcCC-CChhHHHHHHHH
Q 048321 115 GFAQMGFLENVLRLFYNMRLVGIQADFV----TVMGLTQAAIHAKHLSLLKSVHSFGIH----IGVD-ADVSVCNTWISS 185 (641)
Q Consensus 115 ~~~~~g~~~~a~~l~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~ll~~ 185 (641)
-+++.|+....+.+|+...+-| .-|.. .|+.+-.+|.-.+++++|.+.|..=+. .|-. -.......|.+.
T Consensus 26 RLck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 3678888888888888888876 22333 366667777777888888887654221 1100 011222334444
Q ss_pred hHcCCChhHHHHHHhc-------ccCCCCCchhHHHHHHHHhcCCC--------------------chHHHHHHHHHH--
Q 048321 186 YAKCDDLKMAELVFCG-------IEERLRTVVSWNSMVAGCTYGDK--------------------FDDSLNFYRHMM-- 236 (641)
Q Consensus 186 ~~~~g~~~~A~~~~~~-------~~~~~~~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~-- 236 (641)
+--.|.+++|...-.+ +.........+-.+...|...|+ ++.|.++|.+=.
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 4445666665433211 11111123344445555554443 233444443321
Q ss_pred --HCCC-CCChhhHHHHHHHhcCCCchHHHHHHHHHHHH----hCCC-CchhHHHHHHHHHHhcCCHHHHHHHHhcC---
Q 048321 237 --YNGF-RLDVTTVVSLLSSFVCPEALVQGRLVHSHGIH----YGFD-LDVSVINTLISMYSKCGDIDSARVLFDGI--- 305 (641)
Q Consensus 237 --~~g~-~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~----~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~--- 305 (641)
+.|- -.-...|..|-+.|.-.|+++.|...++.-+. .|-. .....++.|.+++.-.|+++.|.+.|+..
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 1111 12234566666666777888888877765433 2311 22356677788888888888888777643
Q ss_pred ----CCCCc--chHHHHHHHHHhCCChhHHHHHHHHHHHc-----CCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHH
Q 048321 306 ----CDRTR--VSWTAMISGYAQKGDLDEALRLFFAMEAA-----GELPDLVTVLSMISGCGQSGALELGKWFDNYACS 373 (641)
Q Consensus 306 ----~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 373 (641)
..+.+ .+.-+|...|.-..++++|+.++.+-... ...-....+.++..++...|..++|..+.+.-.+
T Consensus 265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 22222 24555666777777777777777654321 1122335566777777777777777666555443
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.29 Score=47.99 Aligned_cols=160 Identities=19% Similarity=0.089 Sum_probs=97.2
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCC---C----hhHHHHHHHHHHH---cCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 048321 385 ALIDMYSKCGSIGDARELFYALPEK---I----VVSWTTMIAGCAL---NGEFVEALDLFHQLMELDLRPNRVTFLAVLQ 454 (641)
Q Consensus 385 ~li~~~~~~g~~~~A~~~~~~~~~~---~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 454 (641)
.++-.|....+++...++.+.+... + ...-....-++.+ .|+.++|++++..+....-.++..|+..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444577777778777777777652 1 1122233445555 7888888888888665555667777766655
Q ss_pred HHhc---------cCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChH----HHHHHH---HhCC-----CC
Q 048321 455 ACTH---------TGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLK----EALDFV---QSMP-----IK 513 (641)
Q Consensus 455 ~~~~---------~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~----~A~~~~---~~~~-----~~ 513 (641)
.|-. ...+++|...|.+.-+ +.|+..+--.++.++...|... +..++- ..+. ..
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe-----~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~ 300 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFE-----IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLE 300 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHc-----CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccc
Confidence 5422 2246677777765543 5566544334444444444322 222222 1111 23
Q ss_pred CChhH--HHHHHHHHHHcCCHHHHHHHHHHhHccCCCC
Q 048321 514 SDAGI--WGTLLCACKIHLNIEIGEYVAYCLFKLEPHS 549 (641)
Q Consensus 514 p~~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 549 (641)
+...- +.+++.++.-.||.+.|.+++++++++.|..
T Consensus 301 ~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 301 KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 33443 4678899999999999999999999997763
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0027 Score=47.24 Aligned_cols=60 Identities=7% Similarity=-0.025 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhHcc----CCC---CCccHHHHHHHHHhcCCchHHHHHHHHHH
Q 048321 518 IWGTLLCACKIHLNIEIGEYVAYCLFKL----EPH---SAAPYVEMANKYALGGRWDGVANIRTMMK 577 (641)
Q Consensus 518 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~eA~~~~~~m~ 577 (641)
+++.+...+...|++++|+..+++++++ .++ -...+..++.+|...|++++|.+++++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5666777777777777777777777643 122 24567788999999999999999888764
|
... |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.12 Score=46.86 Aligned_cols=140 Identities=19% Similarity=0.123 Sum_probs=76.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHH
Q 048321 416 TMIAGCALNGEFVEALDLFHQLMELDLRPNR----VTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMA 491 (641)
Q Consensus 416 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~ 491 (641)
.....+...|++.+|++.|+++... -|+. .....+..++.+.|++++|...++...+.++ -.|... +....
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~--~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP--~~~~~~-~A~Y~ 84 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDR--YPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYP--NSPKAD-YALYM 84 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T--T-TTHH-HHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC--CCcchh-hHHHH
Confidence 3445566788888888888888875 3332 2455566678888888888888888887766 444321 11111
Q ss_pred HHhhccCChHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCC-----------------ccHH
Q 048321 492 DLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSA-----------------APYV 554 (641)
Q Consensus 492 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-----------------~~~~ 554 (641)
.+.+......... ......+....|...++.+++..|+++ ..-.
T Consensus 85 ~g~~~~~~~~~~~-------------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~ 145 (203)
T PF13525_consen 85 LGLSYYKQIPGIL-------------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHEL 145 (203)
T ss_dssp HHHHHHHHHHHHH--------------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCccch-------------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHH
Confidence 1111100000000 001122334455555555555555532 2234
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 555 EMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 555 ~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
.++..|.+.|+|..|..-++.+.+.
T Consensus 146 ~ia~~Y~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 146 YIARFYYKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HHHHHHHCTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHH
Confidence 5688899999999999999888764
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.69 Score=42.62 Aligned_cols=196 Identities=18% Similarity=0.120 Sum_probs=125.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 048321 380 VMVCNALIDMYSKCGSIGDARELFYALPE-----KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQ 454 (641)
Q Consensus 380 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 454 (641)
..........+...+++..+...+..... .....+......+...+++..+...+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 45556666667777777777766666432 3345566666666667777777777777776432221 12222222
Q ss_pred -HHhccCChHHHHHHHHHHHhhhCCCC--CCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCCC--hhHHHHHHHHHHH
Q 048321 455 -ACTHTGFLEKGWAISIIQYDDKGISY--NPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKSD--AGIWGTLLCACKI 528 (641)
Q Consensus 455 -~~~~~g~~~~a~~~~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~--~~~~~~ll~~~~~ 528 (641)
.+...|+++.+...+..... .. . ......+......+...++.++|...+.... ..++ ...+..+...+..
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 138 GALYELGDYEEALELYEKALE-LD--PELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh-cC--CCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH
Confidence 56777888888888877753 22 0 1123334444444667778888888877765 2233 5567777777777
Q ss_pred cCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 529 HLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 529 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
.++.+.+...+..+....|.....+..++..+...|.++++...++.....
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 788888888888888887775566667777777667788888777666543
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.29 Score=39.28 Aligned_cols=140 Identities=12% Similarity=0.013 Sum_probs=82.7
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChH
Q 048321 422 ALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLK 501 (641)
Q Consensus 422 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 501 (641)
.-.|..++..++..+.... .+..-++.++--....-+-+-..+.++.+-+-+. ...+|++.
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFD----------------is~C~NlK 73 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFD----------------ISKCGNLK 73 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-----------------GGG-S-TH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcC----------------chhhcchH
Confidence 3457777778887777653 2333455554433333444444455554443222 23445555
Q ss_pred HHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 048321 502 EALDFVQSMPIKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRNQV 581 (641)
Q Consensus 502 ~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~~~ 581 (641)
.....+-.+. .+......-+......|.-++-.++++.+.+-+..+|+...-++.+|.+.|+..++.+++++..++|+
T Consensus 74 rVi~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 74 RVIECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 5555444433 23334555677788899999999999998865555689999999999999999999999999999987
Q ss_pred c
Q 048321 582 K 582 (641)
Q Consensus 582 ~ 582 (641)
+
T Consensus 152 k 152 (161)
T PF09205_consen 152 K 152 (161)
T ss_dssp H
T ss_pred H
Confidence 5
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.2 Score=46.72 Aligned_cols=102 Identities=11% Similarity=-0.013 Sum_probs=72.1
Q ss_pred ChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccC---ChHHHHHHHHhCC-CCC-ChhHH
Q 048321 445 NRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKG---KLKEALDFVQSMP-IKS-DAGIW 519 (641)
Q Consensus 445 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~-~~p-~~~~~ 519 (641)
|...|..|..+|...|+++.|..-|....+-.| ++...+..+..++.... ...++.++|+++. .+| |+.+.
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g----~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAG----DNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 445777777788888888888888888776555 55666666665554332 3567778888866 445 45566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhHccCCCCC
Q 048321 520 GTLLCACKIHLNIEIGEYVAYCLFKLEPHSA 550 (641)
Q Consensus 520 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 550 (641)
..|...+...|++.+|...++.+++..|.+.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 6666778888888888888888888877643
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.044 Score=54.35 Aligned_cols=157 Identities=15% Similarity=0.121 Sum_probs=97.8
Q ss_pred hHH--HHHHHHHHHc-----CChHHHHHHHHHHHH-cCCCCChh-hHHHHHHHHhcc---------CChHHHHHHHHHHH
Q 048321 412 VSW--TTMIAGCALN-----GEFVEALDLFHQLME-LDLRPNRV-TFLAVLQACTHT---------GFLEKGWAISIIQY 473 (641)
Q Consensus 412 ~~~--~~li~~~~~~-----g~~~~A~~~~~~m~~-~g~~p~~~-t~~~ll~~~~~~---------g~~~~a~~~~~~~~ 473 (641)
..| ...+.+.... ...+.|+.+|.+... ..+.|+.. .|..+..++... ....+|.+.-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 445 5555554431 235678888888882 23577765 444444433322 13445666666666
Q ss_pred hhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCCC-hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCc
Q 048321 474 DDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKSD-AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAA 551 (641)
Q Consensus 474 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 551 (641)
+.. .-|......+..++.-.|+++.|...|++.. ..|| ..+|......+...|+.++|.+.++++++++|....
T Consensus 332 eld----~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~ 407 (458)
T PRK11906 332 DIT----TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRK 407 (458)
T ss_pred hcC----CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhH
Confidence 422 2456666777777777777888888888876 5554 447777777777888888888888888888887543
Q ss_pred cHH--HHHHHHHhcCCchHHHHHH
Q 048321 552 PYV--EMANKYALGGRWDGVANIR 573 (641)
Q Consensus 552 ~~~--~l~~~~~~~g~~~eA~~~~ 573 (641)
+-. ..+++|+..+ .++|.+++
T Consensus 408 ~~~~~~~~~~~~~~~-~~~~~~~~ 430 (458)
T PRK11906 408 AVVIKECVDMYVPNP-LKNNIKLY 430 (458)
T ss_pred HHHHHHHHHHHcCCc-hhhhHHHH
Confidence 333 3444565544 56666655
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.42 Score=49.00 Aligned_cols=92 Identities=11% Similarity=0.151 Sum_probs=52.4
Q ss_pred cHHHHHHHHHhcCChhHHHHH---------HHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHH--HHHHHHHcCCCCh
Q 048321 108 SWNAMLVGFAQMGFLENVLRL---------FYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSV--HSFGIHIGVDADV 176 (641)
Q Consensus 108 ~~~~li~~~~~~g~~~~a~~l---------~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~--~~~~~~~~~~~~~ 176 (641)
.+.+-+-.|...|.+++|.++ ++.+..+ ..+...++..=++|.+.++..-.+-+ ++.+.+.|-.|+.
T Consensus 558 p~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~ 635 (1081)
T KOG1538|consen 558 PQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPND 635 (1081)
T ss_pred cccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchH
Confidence 344445556667777766553 2222111 12334455666667666665544333 4556666766765
Q ss_pred hHHHHHHHHhHcCCChhHHHHHHhcccC
Q 048321 177 SVCNTWISSYAKCDDLKMAELVFCGIEE 204 (641)
Q Consensus 177 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 204 (641)
.. +...++-.|.+.+|.++|.+-..
T Consensus 636 iL---lA~~~Ay~gKF~EAAklFk~~G~ 660 (1081)
T KOG1538|consen 636 LL---LADVFAYQGKFHEAAKLFKRSGH 660 (1081)
T ss_pred HH---HHHHHHhhhhHHHHHHHHHHcCc
Confidence 44 34566777889999888866543
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.25 Score=49.21 Aligned_cols=118 Identities=8% Similarity=-0.047 Sum_probs=81.1
Q ss_pred ChHHHHHHHHHHHhhhCCCCCCC-hhHHHHHHHHhh---------ccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHH
Q 048321 461 FLEKGWAISIIQYDDKGISYNPE-LDHYSCMADLLG---------RKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKI 528 (641)
Q Consensus 461 ~~~~a~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~ 528 (641)
..+.|..+|.+...... +.|+ ...|..+..++. ......+|.++.+... .+.|+.....+..+...
T Consensus 273 ~~~~Al~lf~ra~~~~~--ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSD--IQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHHhhccc--CCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence 45677778888874445 6776 444444443322 1223456666666654 34466677777777777
Q ss_pred cCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048321 529 HLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRNQ 580 (641)
Q Consensus 529 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~~ 580 (641)
.++.+.|...|++++.++|+.+..|...+.+..-.|+.++|.+.+++..+..
T Consensus 351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs 402 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLE 402 (458)
T ss_pred hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 7778888888888888888888888888888888888888888888754433
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.24 E-value=1.7 Score=44.58 Aligned_cols=410 Identities=11% Similarity=0.091 Sum_probs=231.2
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhh-HHHHHHHHhccCChhHHHHHHHHHHHHcCCCChhHHHHHH
Q 048321 105 DVASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVT-VMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWI 183 (641)
Q Consensus 105 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 183 (641)
+...|+.+|.---.....+.+...+..+... .|...- |......=.+.|..+.+..+|++.+. |++.+...|...+
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYL 120 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHH
Confidence 4567888887655555566667777777643 455443 33333334566778888888888776 4566777777766
Q ss_pred HHhHc-CCChhHHHHHHhcccCC----CCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhc---
Q 048321 184 SSYAK-CDDLKMAELVFCGIEER----LRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVVSLLSSFV--- 255 (641)
Q Consensus 184 ~~~~~-~g~~~~A~~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~--- 255 (641)
..++. .|+.+.....|+..... ..+...|...|.--..++++.....+|++.++. |. .-|+.....+.
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei---P~-~~~~~~f~~f~~~l 196 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI---PL-HQLNRHFDRFKQLL 196 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh---hh-hHhHHHHHHHHHHH
Confidence 55443 57777777888776653 445777888888888888899999999888763 21 11221111110
Q ss_pred CC------CchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC-HHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhH
Q 048321 256 CP------EALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGD-IDSARVLFDGICDRTRVSWTAMISGYAQKGDLDE 328 (641)
Q Consensus 256 ~~------~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 328 (641)
+. ...+++.++-...... ..-...+. .+.-....+....+ .+..++
T Consensus 197 ~~~~~~~l~~~d~~~~l~~~~~~~-------------~~~~~~~~~~e~~~~~v~~~~~~--------------s~~l~~ 249 (577)
T KOG1258|consen 197 NQNEEKILLSIDELIQLRSDVAER-------------SKITHSQEPLEELEIGVKDSTDP--------------SKSLTE 249 (577)
T ss_pred hcCChhhhcCHHHHHHHhhhHHhh-------------hhcccccChhHHHHHHHhhccCc--------------cchhhH
Confidence 00 0111111111110000 00000000 00000011111000 111111
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHc---C----CCCchhHHHHHHHHHHhcCCHHHHHH
Q 048321 329 ALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSG---G----LKDNVMVCNALIDMYSKCGSIGDARE 401 (641)
Q Consensus 329 A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~---~----~~~~~~~~~~li~~~~~~g~~~~A~~ 401 (641)
+.....+.... --..+-........+..++.-++. . ..++..+|...++.-.+.|+.+.+.-
T Consensus 250 ~~~~l~~~~~~-----------~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~ 318 (577)
T KOG1258|consen 250 EKTILKRIVSI-----------HEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFI 318 (577)
T ss_pred HHHHHHHHHHH-----------HHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHH
Confidence 11111111000 000011111122222223332221 1 12346678888888889999999999
Q ss_pred HHhhCCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCC
Q 048321 402 LFYALPEK---IVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGI 478 (641)
Q Consensus 402 ~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 478 (641)
+|++..-| -...|--.+.-....|+.+-|-.++....+--++-...+-..-..-+...|++..|..+++.+.++.
T Consensus 319 l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~-- 396 (577)
T KOG1258|consen 319 LFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY-- 396 (577)
T ss_pred HHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--
Confidence 99988764 2345666666566668988888888877765433333333333334567889999999999998653
Q ss_pred CCCCC-hhHHHHHHHHhhccCChHHHH---HHHHhCC-CCCChhHHHHHHH-----HHHHcCCHHHHHHHHHHhHccCCC
Q 048321 479 SYNPE-LDHYSCMADLLGRKGKLKEAL---DFVQSMP-IKSDAGIWGTLLC-----ACKIHLNIEIGEYVAYCLFKLEPH 548 (641)
Q Consensus 479 ~~~p~-~~~~~~l~~~~~~~g~~~~A~---~~~~~~~-~~p~~~~~~~ll~-----~~~~~g~~~~a~~~~~~~~~~~p~ 548 (641)
|+ +..-..-+...-+.|..+.+. +++.... .+.+..+...+.- -+...++.+.|..++.++.+..|+
T Consensus 397 ---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~ 473 (577)
T KOG1258|consen 397 ---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPD 473 (577)
T ss_pred ---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCc
Confidence 44 333344456777888888888 5555443 3333333333322 234568999999999999999999
Q ss_pred CCccHHHHHHHHHhcC
Q 048321 549 SAAPYVEMANKYALGG 564 (641)
Q Consensus 549 ~~~~~~~l~~~~~~~g 564 (641)
+...|..+.+.....+
T Consensus 474 ~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 474 CKVLYLELIRFELIQP 489 (577)
T ss_pred cHHHHHHHHHHHHhCC
Confidence 9999999988877665
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.23 E-value=1.4 Score=43.49 Aligned_cols=61 Identities=15% Similarity=0.001 Sum_probs=51.7
Q ss_pred hHHHHHHHH--HHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048321 517 GIWGTLLCA--CKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 517 ~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
..-+.|..| ...+|++.++.-...-+.++.| ++.+|..+|-++....+++||.+++..++.
T Consensus 461 eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 461 EIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 344555554 5689999999999999999999 599999999999999999999999987664
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.0058 Score=45.42 Aligned_cols=60 Identities=18% Similarity=0.147 Sum_probs=33.3
Q ss_pred HHHHHHHHhhccCChHHHHHHHHhCC-----CC---CC-hhHHHHHHHHHHHcCCHHHHHHHHHHhHcc
Q 048321 486 HYSCMADLLGRKGKLKEALDFVQSMP-----IK---SD-AGIWGTLLCACKIHLNIEIGEYVAYCLFKL 545 (641)
Q Consensus 486 ~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~---p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 545 (641)
+|+.+...|.+.|++++|++.|++.. .. |+ ..++..+...+...|++++|++.+++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 44455555555555555555555432 11 12 335566666677777777777777766553
|
... |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.10 E-value=1.6 Score=42.98 Aligned_cols=134 Identities=10% Similarity=0.017 Sum_probs=105.6
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHH
Q 048321 411 VVSWTTMIAGCALNGEFVEALDLFHQLMELD-LRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSC 489 (641)
Q Consensus 411 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ 489 (641)
...|...++.-.+..-.+.|..+|-+..+.| +.++...+++++.-++ .|+...|..+|+.-...++ .+...-.-
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~----d~~~y~~k 471 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFP----DSTLYKEK 471 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCC----CchHHHHH
Confidence 3567778887777777889999999999988 5677778888888655 4788899999998775443 33344456
Q ss_pred HHHHhhccCChHHHHHHHHhCC--CCCC--hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCC
Q 048321 490 MADLLGRKGKLKEALDFVQSMP--IKSD--AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHS 549 (641)
Q Consensus 490 l~~~~~~~g~~~~A~~~~~~~~--~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 549 (641)
.+..+.+-++-+.|..+|+... ...+ ..+|..++..-..-|+...+..+-+++.++-|..
T Consensus 472 yl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 472 YLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 7788889999999999999654 2223 4589999999999999999999999999998874
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.053 Score=52.41 Aligned_cols=138 Identities=13% Similarity=-0.010 Sum_probs=101.1
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhcc
Q 048321 418 IAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRK 497 (641)
Q Consensus 418 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 497 (641)
.+.|.+.|++..|...|++.... |. +.+.-+.++..... ..-...+..+.-+|.+.
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~------------l~-~~~~~~~ee~~~~~-----------~~k~~~~lNlA~c~lKl 270 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF------------LE-YRRSFDEEEQKKAE-----------ALKLACHLNLAACYLKL 270 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH------------hh-ccccCCHHHHHHHH-----------HHHHHHhhHHHHHHHhh
Confidence 45677888888888888887652 11 11111112222111 12234566677888999
Q ss_pred CChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHH-HHHHH
Q 048321 498 GKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGV-ANIRT 574 (641)
Q Consensus 498 g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA-~~~~~ 574 (641)
+++.+|+...+... .++|.-.+..-..+|...|+++.|+..|+++++++|+|..+-..++.+--+..++.+. .+++.
T Consensus 271 ~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~ 350 (397)
T KOG0543|consen 271 KEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYA 350 (397)
T ss_pred hhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998876 4556777777888999999999999999999999999988888888888887776666 66888
Q ss_pred HHHhC
Q 048321 575 MMKRN 579 (641)
Q Consensus 575 ~m~~~ 579 (641)
.|-.+
T Consensus 351 ~mF~k 355 (397)
T KOG0543|consen 351 NMFAK 355 (397)
T ss_pred HHhhc
Confidence 88653
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.02 E-value=2.4 Score=44.21 Aligned_cols=40 Identities=10% Similarity=0.051 Sum_probs=22.3
Q ss_pred hHHHHHhhccCCCCcccHHHHHHHHHhcCChhHHHHHHHHHH
Q 048321 92 DCAYKIFDEMAVRDVASWNAMLVGFAQMGFLENVLRLFYNMR 133 (641)
Q Consensus 92 ~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~ 133 (641)
++|.+..+. .|.+..|..+.....+.-.++-|...|-+..
T Consensus 680 edA~qfiEd--nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~ 719 (1189)
T KOG2041|consen 680 EDAIQFIED--NPHPRLWRLLAEYALFKLALDTAEHAFVRCG 719 (1189)
T ss_pred HHHHHHHhc--CCchHHHHHHHHHHHHHHhhhhHhhhhhhhc
Confidence 344443333 3445667777766666666666666655543
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.038 Score=50.66 Aligned_cols=58 Identities=14% Similarity=0.057 Sum_probs=38.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHhHccCCCC---CccHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 522 LLCACKIHLNIEIGEYVAYCLFKLEPHS---AAPYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 522 ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
|..++...|+++.|...|..+.+-.|++ |+.+.-|+.+..+.|+-++|..+++++.++
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 5556666666666666666666655543 455667777777777777777777766654
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.15 Score=42.05 Aligned_cols=88 Identities=14% Similarity=0.038 Sum_probs=57.5
Q ss_pred HHhhccCChHHHHHHHHhCC----CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCc---cHHHHHHHHHhc
Q 048321 492 DLLGRKGKLKEALDFVQSMP----IKS-DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAA---PYVEMANKYALG 563 (641)
Q Consensus 492 ~~~~~~g~~~~A~~~~~~~~----~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~ 563 (641)
....+.|++++|.+.|+.+. ..| ....-..|+.++.+.++++.|...+++.+++.|.++. ++...|-++..+
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~ 97 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQ 97 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHH
Confidence 33446777777777777765 112 2334556778888889999999999999999887654 344445455555
Q ss_pred CC---------------chHHHHHHHHHHhC
Q 048321 564 GR---------------WDGVANIRTMMKRN 579 (641)
Q Consensus 564 g~---------------~~eA~~~~~~m~~~ 579 (641)
.. ..+|..-|+.+..+
T Consensus 98 ~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 98 DEGSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred hhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 44 55666666655543
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.05 Score=53.90 Aligned_cols=63 Identities=11% Similarity=0.089 Sum_probs=45.2
Q ss_pred ChhHHHHHHHHhhccCChHHHHHHHHhCC-CCCChh----HHHHHHHHHHHcCCHHHHHHHHHHhHcc
Q 048321 483 ELDHYSCMADLLGRKGKLKEALDFVQSMP-IKSDAG----IWGTLLCACKIHLNIEIGEYVAYCLFKL 545 (641)
Q Consensus 483 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 545 (641)
+...++.+..+|.+.|++++|+..|++.. ..|+.. +|..+..+|...|+.++|+..+++++++
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35667777777777777777777777744 556532 4777777777778888888888777776
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.77 E-value=1.6 Score=40.14 Aligned_cols=197 Identities=18% Similarity=0.077 Sum_probs=126.5
Q ss_pred HHHHHHHHHhcCcCchHHHHHHHHHHHHc-CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-hhHHHHHHH-H
Q 048321 346 VTVLSMISGCGQSGALELGKWFDNYACSG-GLKDNVMVCNALIDMYSKCGSIGDARELFYALPE--KI-VVSWTTMIA-G 420 (641)
Q Consensus 346 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~-~ 420 (641)
..+......+...+....+...+...... ........+..+...+...++...+.+.+..... ++ ......... .
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 33344444444555555555544444431 2233444555555566666667777777766554 11 122333333 6
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCC----ChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCC-ChhHHHHHHHHhh
Q 048321 421 CALNGEFVEALDLFHQLMELDLRP----NRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNP-ELDHYSCMADLLG 495 (641)
Q Consensus 421 ~~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 495 (641)
+...|+++.|...+.+... ..| ....+......+...++.+.+...+.......+ . ....+..+...+.
T Consensus 140 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 213 (291)
T COG0457 140 LYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNP----DDDAEALLNLGLLYL 213 (291)
T ss_pred HHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCc----ccchHHHHHhhHHHH
Confidence 7788899999999988855 244 222344444446678889999999888885332 3 3677888888888
Q ss_pred ccCChHHHHHHHHhCC-CCCC-hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCC
Q 048321 496 RKGKLKEALDFVQSMP-IKSD-AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPH 548 (641)
Q Consensus 496 ~~g~~~~A~~~~~~~~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 548 (641)
..+.+++|...+.... ..|+ ...+..+...+...++.+.+...+.+..+..|.
T Consensus 214 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 214 KLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 8889999999888876 4444 445566666666777899999999999998886
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.68 E-value=1.5 Score=39.71 Aligned_cols=56 Identities=18% Similarity=0.042 Sum_probs=23.9
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCC--CCHHHHHHHHHHhcCcCchHHHHHHHHHHHH
Q 048321 318 SGYAQKGDLDEALRLFFAMEAAGEL--PDLVTVLSMISGCGQSGALELGKWFDNYACS 373 (641)
Q Consensus 318 ~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 373 (641)
..+.+.|++.+|...|+++...-.. --......+..++.+.|+++.|...++..++
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344555566666665555543111 0112223334444445555555555544444
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.47 Score=44.12 Aligned_cols=120 Identities=9% Similarity=0.049 Sum_probs=81.9
Q ss_pred HHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCCCCCChhHHHH---HHHHHHHcCC
Q 048321 455 ACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGT---LLCACKIHLN 531 (641)
Q Consensus 455 ~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~---ll~~~~~~g~ 531 (641)
.....|++.+|...|+......+ -+...--.|+.+|...|+.++|..++..++......-|.. -+....+..+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~----~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAP----ENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCc----ccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhc
Confidence 44667888888888888875433 3356667788888899999999999998883333222322 2233333333
Q ss_pred HHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 532 IEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 532 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
..+.. .+++-+..+|+|...-..++..|...|+.++|.+.+-.+..+
T Consensus 219 ~~~~~-~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 219 TPEIQ-DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred CCCHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 32222 234445678998999999999999999999999877666554
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.11 Score=49.16 Aligned_cols=163 Identities=13% Similarity=0.041 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH-cCCCCCh---hhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCC--ChhH
Q 048321 413 SWTTMIAGCALNGEFVEALDLFHQLME-LDLRPNR---VTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNP--ELDH 486 (641)
Q Consensus 413 ~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~---~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p--~~~~ 486 (641)
+|..+..++-+..++.+++.+-+.-.. .|..|.. ....++-.++...+-++++++.|+.+.+-....-.| ....
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 444455555555555555554443332 2222311 122233445555556677777766665322200111 2345
Q ss_pred HHHHHHHhhccCChHHHHHHHHhCC-----CC-CC------hhHHHHHHHHHHHcCCHHHHHHHHHHhHccC--CC----
Q 048321 487 YSCMADLLGRKGKLKEALDFVQSMP-----IK-SD------AGIWGTLLCACKIHLNIEIGEYVAYCLFKLE--PH---- 548 (641)
Q Consensus 487 ~~~l~~~~~~~g~~~~A~~~~~~~~-----~~-p~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~---- 548 (641)
+..|...|.+..++++|.-+..+.. .. .| ..+...+.-+++..|....|.+.-+++.++- ..
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 6667777777777776655544432 11 11 1122223445666777766766666654431 11
Q ss_pred CCccHHHHHHHHHhcCCchHHHHHHHH
Q 048321 549 SAAPYVEMANKYALGGRWDGVANIRTM 575 (641)
Q Consensus 549 ~~~~~~~l~~~~~~~g~~~eA~~~~~~ 575 (641)
......+++++|...|+.|.|..-++.
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 223344667777777776666555444
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.65 Score=48.10 Aligned_cols=115 Identities=16% Similarity=0.012 Sum_probs=80.2
Q ss_pred cCChHHHHHHHHHHHhhhCCCCCCChhHHH-HHHHHhhccCChHHHHHHHHhCCC------CCChhHHHHHHHHHHHcCC
Q 048321 459 TGFLEKGWAISIIQYDDKGISYNPELDHYS-CMADLLGRKGKLKEALDFVQSMPI------KSDAGIWGTLLCACKIHLN 531 (641)
Q Consensus 459 ~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~------~p~~~~~~~ll~~~~~~g~ 531 (641)
....+.+.++++.+.+.+ |+...|. .-...+...|++++|++.|++... +-....+--+...+....+
T Consensus 246 ~~~~~~a~~lL~~~~~~y-----P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~ 320 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRY-----PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHD 320 (468)
T ss_pred CCCHHHHHHHHHHHHHhC-----CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHch
Confidence 456778888888888644 4544443 334667778888888888886541 1123345556677788899
Q ss_pred HHHHHHHHHHhHccCCCCCcc-HHHHHHHHHhcCCc-------hHHHHHHHHHHh
Q 048321 532 IEIGEYVAYCLFKLEPHSAAP-YVEMANKYALGGRW-------DGVANIRTMMKR 578 (641)
Q Consensus 532 ~~~a~~~~~~~~~~~p~~~~~-~~~l~~~~~~~g~~-------~eA~~~~~~m~~ 578 (641)
+++|...+.++.+...-.... +...+-+|...|+. ++|.+++++.+.
T Consensus 321 w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 321 WEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 999999999998876554333 34566678888988 888888887765
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.14 Score=47.96 Aligned_cols=159 Identities=14% Similarity=-0.025 Sum_probs=115.3
Q ss_pred HcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHH----HHHHhhccC
Q 048321 423 LNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSC----MADLLGRKG 498 (641)
Q Consensus 423 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~----l~~~~~~~g 498 (641)
-+|+..+|-..++++.+. .+.|...+...-.+|...|+...-...++++.... .|+...|.. +..++..+|
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w----n~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW----NADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc----CCCCcHHHHHHHHHHhhHHHhc
Confidence 478888999999999886 45566788888889999999999999998887543 366655543 445567899
Q ss_pred ChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCC----CCccHHHHHHHHHhcCCchHHHHH
Q 048321 499 KLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPH----SAAPYVEMANKYALGGRWDGVANI 572 (641)
Q Consensus 499 ~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~eA~~~ 572 (641)
-+++|++.-++.. .+.|.=.-.++.......|+.+++.+..++--..-.. -+..|-..+-.|...+.++.|.++
T Consensus 190 ~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 190 IYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred cchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 9999999998876 2334434456666777889999999887765432211 134566677778888999999999
Q ss_pred HHHHHhCCCccCCc
Q 048321 573 RTMMKRNQVKKFPG 586 (641)
Q Consensus 573 ~~~m~~~~~~~~~~ 586 (641)
++.=.-+...|+.+
T Consensus 270 yD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 270 YDREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHHhhccch
Confidence 87654444555554
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.037 Score=32.95 Aligned_cols=33 Identities=21% Similarity=0.044 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCC
Q 048321 517 GIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHS 549 (641)
Q Consensus 517 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 549 (641)
..|..+...+...|++++|++.++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 356677777888888888888888888888864
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.13 Score=43.59 Aligned_cols=86 Identities=10% Similarity=-0.115 Sum_probs=60.8
Q ss_pred HHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCH
Q 048321 455 ACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNI 532 (641)
Q Consensus 455 ~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~ 532 (641)
-+-..|++++|..+|.-+.. .+ .-+...|..|..++-..+++++|+..|...- ...|+.........+...|+.
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~-~d---~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCI-YD---FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHH-hC---cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH
Confidence 34567888888888887773 22 1345556777778888888888888887643 233444555566777788888
Q ss_pred HHHHHHHHHhHc
Q 048321 533 EIGEYVAYCLFK 544 (641)
Q Consensus 533 ~~a~~~~~~~~~ 544 (641)
+.|+..|+.+++
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 888888888877
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.24 Score=40.45 Aligned_cols=47 Identities=6% Similarity=0.032 Sum_probs=23.0
Q ss_pred CCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHH
Q 048321 443 RPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMA 491 (641)
Q Consensus 443 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~ 491 (641)
.|+..+..+++.+|+..|++..|.++.+...+.++ ++-+...|..|+
T Consensus 49 ~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~--I~i~~~~W~~Ll 95 (126)
T PF12921_consen 49 YPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYP--IPIPKEFWRRLL 95 (126)
T ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcC--CCCCHHHHHHHH
Confidence 34444555555555555555555555555554444 444444444443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.029 Score=33.53 Aligned_cols=32 Identities=16% Similarity=-0.059 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHhHccCCC
Q 048321 517 GIWGTLLCACKIHLNIEIGEYVAYCLFKLEPH 548 (641)
Q Consensus 517 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 548 (641)
.+|..+...+...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46777888888888888888888888888886
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.17 Score=41.33 Aligned_cols=50 Identities=20% Similarity=0.288 Sum_probs=39.7
Q ss_pred CCCChhHHHHHHHHhhccCChHHHHHHHHhCC----CCCChhHHHHHHHHHHHc
Q 048321 480 YNPELDHYSCMADLLGRKGKLKEALDFVQSMP----IKSDAGIWGTLLCACKIH 529 (641)
Q Consensus 480 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~~~~~~~ll~~~~~~ 529 (641)
+.|+.....+++.+|+..|++..|+++++... .+-+...|..|+.-+...
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 78899999999999999999999999887754 444577888888765443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.26 E-value=1.6 Score=48.40 Aligned_cols=24 Identities=17% Similarity=0.050 Sum_probs=11.3
Q ss_pred HHHHHHhhccCChHHHHHHHHhCC
Q 048321 488 SCMADLLGRKGKLKEALDFVQSMP 511 (641)
Q Consensus 488 ~~l~~~~~~~g~~~~A~~~~~~~~ 511 (641)
..|+..+...++.-+|-++..+..
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHHh
Confidence 334444445555555544444433
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.17 E-value=1 Score=46.67 Aligned_cols=114 Identities=17% Similarity=0.082 Sum_probs=54.6
Q ss_pred CChHHHHHHHHHHHHcCCCCChhhHHHHHH-HHhccCChHHHHHHHHHHHhhhCCCCCCC--hhHHHHHHHHhhccCChH
Q 048321 425 GEFVEALDLFHQLMELDLRPNRVTFLAVLQ-ACTHTGFLEKGWAISIIQYDDKGISYNPE--LDHYSCMADLLGRKGKLK 501 (641)
Q Consensus 425 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~-~~~~~g~~~~a~~~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~ 501 (641)
...+.|.++++.+.+. -|+...|...-. .+...|++++|.+.|+....... --|. ...+.-+.-.+.-.++++
T Consensus 247 ~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~--~~~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQS--EWKQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred CCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchh--hHHhHHHHHHHHHHHHHHHHchHH
Confidence 3445566666666654 455555444333 44455666666666665442111 1111 122333444455666666
Q ss_pred HHHHHHHhCC--CCCChhHHHHHHHHH-HHcCCH-------HHHHHHHHHh
Q 048321 502 EALDFVQSMP--IKSDAGIWGTLLCAC-KIHLNI-------EIGEYVAYCL 542 (641)
Q Consensus 502 ~A~~~~~~~~--~~p~~~~~~~ll~~~-~~~g~~-------~~a~~~~~~~ 542 (641)
+|.+.|..+. ..-+...|.-+..+| ...|+. ++|...++++
T Consensus 323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 6666666655 222233343333333 234555 5555555544
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.058 Score=46.54 Aligned_cols=90 Identities=13% Similarity=0.029 Sum_probs=71.0
Q ss_pred HHhhccCChHHHHHHHHhCC--CCCC-----hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcC
Q 048321 492 DLLGRKGKLKEALDFVQSMP--IKSD-----AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGG 564 (641)
Q Consensus 492 ~~~~~~g~~~~A~~~~~~~~--~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 564 (641)
+-+...|++++|..-|..+. .++- .+.|..-..+..+.+.++.|+....+++++.|.+..+....+.+|.+..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 45667888888888777754 2222 2344444566778899999999999999999988888888899999999
Q ss_pred CchHHHHHHHHHHhCCC
Q 048321 565 RWDGVANIRTMMKRNQV 581 (641)
Q Consensus 565 ~~~eA~~~~~~m~~~~~ 581 (641)
++++|.+-++++.+...
T Consensus 183 k~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 183 KYEEALEDYKKILESDP 199 (271)
T ss_pred hHHHHHHHHHHHHHhCc
Confidence 99999999999887653
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.27 Score=45.06 Aligned_cols=126 Identities=10% Similarity=0.018 Sum_probs=85.9
Q ss_pred hhHHhcccC--CCChhhhHHHHHHHHHhC-----CChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHhHHHH
Q 048321 6 LPPRLNRIY--RSSTINQWNSQIREAVNK-----NEAHKTLLLFRQMKQNDIEPNNLTFPFIAKACAKLSDLIYSQMIHG 78 (641)
Q Consensus 6 a~~~f~~~~--~~~~~~~~~~li~~~~~~-----~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~i~~ 78 (641)
.++.|...+ .++-. +|-+.+..+... +.++---..++.|++.|+.-|..+|..||+.+-+..-
T Consensus 53 ~e~~F~aa~~~~RdK~-sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf--------- 122 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKD-SFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF--------- 122 (406)
T ss_pred hhhhhhccCcccccHH-HHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc---------
Confidence 345566555 56666 888888877653 4556666678899999999999999999988744211
Q ss_pred HHhhccCcCCCChhHHHHHhhccCCCCcccHHHHHHHHHhc-CChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCh
Q 048321 79 HIVKSPFVKCDRLDCAYKIFDEMAVRDVASWNAMLVGFAQM-GFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHL 157 (641)
Q Consensus 79 ~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~-g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 157 (641)
..-|.+=..|..- .+-+-++.++++|...|+.||..+-..+++++.+.+..
T Consensus 123 ----------------------------iP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 123 ----------------------------IPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred ----------------------------ccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 1122233333332 23356789999999999999999999999999877653
Q ss_pred -hHHHHHHHHHHH
Q 048321 158 -SLLKSVHSFGIH 169 (641)
Q Consensus 158 -~~a~~~~~~~~~ 169 (641)
.+..++.-.|-+
T Consensus 175 ~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 175 TKKVKRMLYWMPK 187 (406)
T ss_pred HHHHHHHHHhhhh
Confidence 334444444443
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.25 Score=41.93 Aligned_cols=72 Identities=15% Similarity=0.253 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHH----hhhCCCCCCChhHH
Q 048321 413 SWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQY----DDKGISYNPELDHY 487 (641)
Q Consensus 413 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~----~~~~~~~~p~~~~~ 487 (641)
+...++..+...|++++|+.+.+++.... +-|...+..++.++...|+..+|.+.|+.+. +..| +.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg--~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELG--IEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS------HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhC--cCcCHHHH
Confidence 34455666667777777777777777752 3345577777777777777777777776654 3456 66665543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.65 Score=43.76 Aligned_cols=155 Identities=11% Similarity=-0.014 Sum_probs=107.2
Q ss_pred HhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHH----HHhccCChH
Q 048321 391 SKCGSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQ----ACTHTGFLE 463 (641)
Q Consensus 391 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~----~~~~~g~~~ 463 (641)
.-.|+..+|...++++.+ .|..+|+--=.+|...|+.+.-...+++.... ..||...|..+-. ++...|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 456888888888888776 47888888889999999999999999998864 3566654443322 456789999
Q ss_pred HHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCCCCCCh------hHHHHHHHHHHHcCCHHHHHH
Q 048321 464 KGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMPIKSDA------GIWGTLLCACKIHLNIEIGEY 537 (641)
Q Consensus 464 ~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~------~~~~~ll~~~~~~g~~~~a~~ 537 (641)
+|.+.-++..+-+. -|.-.-.+....+.-.|+..++.++..+-...-+. ..|-...-.+...+.++.|++
T Consensus 193 dAEk~A~ralqiN~----~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ale 268 (491)
T KOG2610|consen 193 DAEKQADRALQINR----FDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALE 268 (491)
T ss_pred hHHHHHHhhccCCC----cchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence 99998887775222 34555567788889999999999999886511110 011111222334578999999
Q ss_pred HHHHhH--ccCCCCC
Q 048321 538 VAYCLF--KLEPHSA 550 (641)
Q Consensus 538 ~~~~~~--~~~p~~~ 550 (641)
++.+-+ +++.+|.
T Consensus 269 IyD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 269 IYDREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHHHhhccch
Confidence 987532 3445554
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.76 E-value=1.9 Score=43.44 Aligned_cols=99 Identities=7% Similarity=-0.017 Sum_probs=70.4
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChh--HHHHHHHH
Q 048321 450 LAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAG--IWGTLLCA 525 (641)
Q Consensus 450 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~--~~~~ll~~ 525 (641)
..+..++-+.|+.++|.+.|.++.+..+ ..........|+..|...+++.++..++.+-. .-|... .|++.+-.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p--~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLk 340 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFP--NLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLK 340 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCC--ccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHH
Confidence 4456667788999999999999986655 33445567788999999999999999998865 223333 55655544
Q ss_pred HHHcCCH---------------HHHHHHHHHhHccCCCCC
Q 048321 526 CKIHLNI---------------EIGEYVAYCLFKLEPHSA 550 (641)
Q Consensus 526 ~~~~g~~---------------~~a~~~~~~~~~~~p~~~ 550 (641)
.+..++. ..|.++..++++.+|.-+
T Consensus 341 aRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 341 ARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred HHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 4444431 245678889988888754
|
The molecular function of this protein is uncertain. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.74 E-value=2.8 Score=37.93 Aligned_cols=199 Identities=11% Similarity=0.039 Sum_probs=100.8
Q ss_pred HHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC--hhHHHHHHHHHHHcC
Q 048321 348 VLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKI--VVSWTTMIAGCALNG 425 (641)
Q Consensus 348 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~li~~~~~~g 425 (641)
|...-.+|....+++++...+....+. ...+...|. ....++.|..+.+++.+-+ +..|+--...|..+|
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G 105 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG 105 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC
Confidence 333444566666777776665555431 111111111 1223445555555555422 234555666777777
Q ss_pred ChHHHHHHHHHHHH--cCCCCChh--hHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChH
Q 048321 426 EFVEALDLFHQLME--LDLRPNRV--TFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLK 501 (641)
Q Consensus 426 ~~~~A~~~~~~m~~--~g~~p~~~--t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 501 (641)
.++.|-..+++.-+ .++.|+.. .|..-+......++...| .+.+......|.+..+++
T Consensus 106 spdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma------------------~el~gk~sr~lVrl~kf~ 167 (308)
T KOG1585|consen 106 SPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMA------------------FELYGKCSRVLVRLEKFT 167 (308)
T ss_pred CcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHH------------------HHHHHHhhhHhhhhHHhh
Confidence 77766666665443 22344432 222222222222222222 233444556777777877
Q ss_pred HHHHHHHhCC-------CCCCh-hHHHHHHHHHHHcCCHHHHHHHHHHhHcc----CCCCCccHHHHHHHHHhcCCchHH
Q 048321 502 EALDFVQSMP-------IKSDA-GIWGTLLCACKIHLNIEIGEYVAYCLFKL----EPHSAAPYVEMANKYALGGRWDGV 569 (641)
Q Consensus 502 ~A~~~~~~~~-------~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~~~~~~~~l~~~~~~~g~~~eA 569 (641)
||-..|.+-. .-|+. ..+.+.+-.+....|+..|++.++.-..+ .|++..+...|...| ..|+.+++
T Consensus 168 Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~ 246 (308)
T KOG1585|consen 168 EAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEI 246 (308)
T ss_pred HHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHH
Confidence 7766665532 11222 13444445555666888888888775544 244444555555444 45777777
Q ss_pred HHHH
Q 048321 570 ANIR 573 (641)
Q Consensus 570 ~~~~ 573 (641)
.++.
T Consensus 247 ~kvl 250 (308)
T KOG1585|consen 247 KKVL 250 (308)
T ss_pred HHHH
Confidence 6665
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.067 Score=34.27 Aligned_cols=30 Identities=17% Similarity=0.161 Sum_probs=26.8
Q ss_pred CccHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 550 AAPYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 550 ~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
|..+..++..|.+.|++++|+++++++.+.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 356889999999999999999999998875
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=94.34 E-value=8.4 Score=41.59 Aligned_cols=71 Identities=17% Similarity=0.066 Sum_probs=44.0
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCh-------hHHHHHHHHHHHHcCCCChh
Q 048321 105 DVASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHL-------SLLKSVHSFGIHIGVDADVS 177 (641)
Q Consensus 105 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~-------~~a~~~~~~~~~~~~~~~~~ 177 (641)
+...| ++|-.+.++|++++|.++..+.... .......|...++.+....+- +....-+.+..+.....|++
T Consensus 111 ~~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dpy 188 (613)
T PF04097_consen 111 GDPIW-ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPY 188 (613)
T ss_dssp TEEHH-HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HH
T ss_pred CCccH-HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChH
Confidence 34456 5777889999999999999666543 566677888999998775432 23444455444433322543
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.42 Score=44.02 Aligned_cols=92 Identities=21% Similarity=0.237 Sum_probs=47.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCC-hhHHH
Q 048321 414 WTTMIAGCALNGEFVEALDLFHQLMELDLRPNR----VTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPE-LDHYS 488 (641)
Q Consensus 414 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~-~~~~~ 488 (641)
|+.-+. +.+.|++.+|...|...++. -|+. ..+-.|..++...|++++|..+|..+.+.++ -.|. ++.+-
T Consensus 145 Y~~A~~-~~ksgdy~~A~~~F~~fi~~--YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P--~s~KApdall 219 (262)
T COG1729 145 YNAALD-LYKSGDYAEAEQAFQAFIKK--YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYP--KSPKAPDALL 219 (262)
T ss_pred HHHHHH-HHHcCCHHHHHHHHHHHHHc--CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCC--CCCCChHHHH
Confidence 444443 33455666666666666664 2332 1444555666666666666666666665555 3333 23444
Q ss_pred HHHHHhhccCChHHHHHHHHhC
Q 048321 489 CMADLLGRKGKLKEALDFVQSM 510 (641)
Q Consensus 489 ~l~~~~~~~g~~~~A~~~~~~~ 510 (641)
-|.....+.|+.++|...+++.
T Consensus 220 Klg~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 220 KLGVSLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHHHHHhcCHHHHHHHHHHH
Confidence 4444444444444444444443
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.74 Score=46.12 Aligned_cols=148 Identities=8% Similarity=-0.023 Sum_probs=83.8
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHH
Q 048321 424 NGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEA 503 (641)
Q Consensus 424 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 503 (641)
..+...-+++-++..+. .||..+...++. -.....+.++.++|++..+.....+..+. . ....|..-
T Consensus 181 ERnp~aRIkaA~eALei--~pdCAdAYILLA-EEeA~Ti~Eae~l~rqAvkAgE~~lg~s~-----~---~~~~g~~~-- 247 (539)
T PF04184_consen 181 ERNPQARIKAAKEALEI--NPDCADAYILLA-EEEASTIVEAEELLRQAVKAGEASLGKSQ-----F---LQHHGHFW-- 247 (539)
T ss_pred cCCHHHHHHHHHHHHHh--hhhhhHHHhhcc-cccccCHHHHHHHHHHHHHHHHHhhchhh-----h---hhcccchh--
Confidence 34556666666666663 677665544443 23445678888888887742210000100 0 00111111
Q ss_pred HHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCC--CCccHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 048321 504 LDFVQSMPIKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPH--SAAPYVEMANKYALGGRWDGVANIRTMMKRNQV 581 (641)
Q Consensus 504 ~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~~~ 581 (641)
+.+..-...|-..+-..|...+++.|+.++|++.++.+++..|. +-.....|++.|...+++.|+..++.+-.+...
T Consensus 248 -e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~l 326 (539)
T PF04184_consen 248 -EAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISL 326 (539)
T ss_pred -hhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccC
Confidence 11111111222333355666778888888888888888877664 345677888888888888888888877654433
Q ss_pred ccCC
Q 048321 582 KKFP 585 (641)
Q Consensus 582 ~~~~ 585 (641)
.|..
T Consensus 327 pkSA 330 (539)
T PF04184_consen 327 PKSA 330 (539)
T ss_pred CchH
Confidence 3333
|
The molecular function of this protein is uncertain. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.27 E-value=2.5 Score=35.44 Aligned_cols=113 Identities=5% Similarity=-0.004 Sum_probs=60.4
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHHcCCCChhHHHHHHHHh
Q 048321 107 ASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISSY 186 (641)
Q Consensus 107 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 186 (641)
..-..+|..+.+.+.+......++.+...+ ..+...++.++..+++.+. ...... +.. .++.......++.+
T Consensus 8 ~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~---l~~---~~~~yd~~~~~~~c 79 (140)
T smart00299 8 IDVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIER---LDN---KSNHYDIEKVGKLC 79 (140)
T ss_pred CCHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHH---HHh---ccccCCHHHHHHHH
Confidence 345567777777777888888888777665 3555566777777765432 222222 221 12233333455555
Q ss_pred HcCCChhHHHHHHhcccCCCCCchhHHHHHHHHhcC-CCchHHHHHHHH
Q 048321 187 AKCDDLKMAELVFCGIEERLRTVVSWNSMVAGCTYG-DKFDDSLNFYRH 234 (641)
Q Consensus 187 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~ 234 (641)
.+.+-++++.-++.++.. |...+..+... ++++.|.+++.+
T Consensus 80 ~~~~l~~~~~~l~~k~~~-------~~~Al~~~l~~~~d~~~a~~~~~~ 121 (140)
T smart00299 80 EKAKLYEEAVELYKKDGN-------FKDAIVTLIEHLGNYEKAIEYFVK 121 (140)
T ss_pred HHcCcHHHHHHHHHhhcC-------HHHHHHHHHHcccCHHHHHHHHHh
Confidence 555555555555555443 33334444433 455555555443
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=94.18 E-value=4.1 Score=40.18 Aligned_cols=74 Identities=11% Similarity=-0.018 Sum_probs=48.4
Q ss_pred HHHHHhHcCCChhHHHHHHhcccCCCC-----CchhHHHHHHHHhc---CCCchHHHHHHHHHHHCCCCCChhhHHHHHH
Q 048321 181 TWISSYAKCDDLKMAELVFCGIEERLR-----TVVSWNSMVAGCTY---GDKFDDSLNFYRHMMYNGFRLDVTTVVSLLS 252 (641)
Q Consensus 181 ~ll~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 252 (641)
.|+-.|....+++...++++.+...+. ....-....-++.+ .|+.++|++++..+....-.++..||..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 444467778888888888888877411 11112233445556 7888888888888666666677777776665
Q ss_pred Hh
Q 048321 253 SF 254 (641)
Q Consensus 253 ~~ 254 (641)
.|
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 54
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.03 E-value=2.8 Score=37.91 Aligned_cols=23 Identities=4% Similarity=-0.123 Sum_probs=10.9
Q ss_pred HHHHHHHHhcCCCchHHHHHHHH
Q 048321 212 WNSMVAGCTYGDKFDDSLNFYRH 234 (641)
Q Consensus 212 ~~~li~~~~~~g~~~~A~~~~~~ 234 (641)
|+--...|..+|.++.|-..+++
T Consensus 94 ~eKAs~lY~E~GspdtAAmaleK 116 (308)
T KOG1585|consen 94 YEKASELYVECGSPDTAAMALEK 116 (308)
T ss_pred HHHHHHHHHHhCCcchHHHHHHH
Confidence 44444455555555544444443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.99 E-value=4.9 Score=36.91 Aligned_cols=168 Identities=13% Similarity=0.021 Sum_probs=94.5
Q ss_pred HhcCCHHHHHHHHhhCCCCC------hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhc---cC-
Q 048321 391 SKCGSIGDARELFYALPEKI------VVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTH---TG- 460 (641)
Q Consensus 391 ~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~---~g- 460 (641)
...|++++|.+.|+.+.... ..+--.++-++-+.+++++|+..+++....-..-...-|...|.+++. ..
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~ 124 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDD 124 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCc
Confidence 45677777777777766521 123344555666778888888888877764211122234444443332 11
Q ss_pred ---C---hHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCCCCCChhH--HHHHHHHHHHcCCH
Q 048321 461 ---F---LEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGI--WGTLLCACKIHLNI 532 (641)
Q Consensus 461 ---~---~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~--~~~ll~~~~~~g~~ 532 (641)
+ ..+|..-|+..+.+++ +. .--.+|...+..+. |... =..+...|.+.|.+
T Consensus 125 ~~rDq~~~~~A~~~f~~~i~ryP-----nS-------------~Ya~dA~~~i~~~~---d~LA~~Em~IaryY~kr~~~ 183 (254)
T COG4105 125 VTRDQSAARAAFAAFKELVQRYP-----NS-------------RYAPDAKARIVKLN---DALAGHEMAIARYYLKRGAY 183 (254)
T ss_pred cccCHHHHHHHHHHHHHHHHHCC-----CC-------------cchhhHHHHHHHHH---HHHHHHHHHHHHHHHHhcCh
Confidence 1 2234444444444333 11 11111111111110 0000 12345667888999
Q ss_pred HHHHHHHHHhHccCCCCC---ccHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 533 EIGEYVAYCLFKLEPHSA---APYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 533 ~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
.-|..-++++++--|+.+ +.+..+.++|.+.|..++|.+..+-+...
T Consensus 184 ~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 184 VAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 999999999988877644 45667788899999999999987766554
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.93 E-value=7.3 Score=38.68 Aligned_cols=446 Identities=12% Similarity=0.082 Sum_probs=233.0
Q ss_pred HHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHhHHHHHHhhccCcCCCChhHHHHHhhccCCCCc---ccHHHHHHHH
Q 048321 40 LLFRQMKQNDIEPNNLTFPFIAKACAKLSDLIYSQMIHGHIVKSPFVKCDRLDCAYKIFDEMAVRDV---ASWNAMLVGF 116 (641)
Q Consensus 40 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~---~~~~~li~~~ 116 (641)
++=++.++. ..|..+|-.|++-+.. .+..++.++++++|..|-+ .+|..-|++-
T Consensus 30 rLRerIkdN--PtnI~S~fqLiq~~~t---------------------q~s~~~~re~yeq~~~pfp~~~~aw~ly~s~E 86 (660)
T COG5107 30 RLRERIKDN--PTNILSYFQLIQYLET---------------------QESMDAEREMYEQLSSPFPIMEHAWRLYMSGE 86 (660)
T ss_pred HHHHHhhcC--chhHHHHHHHHHHHhh---------------------hhhHHHHHHHHHHhcCCCccccHHHHHHhcch
Confidence 444444442 2255678888888743 4667777888888877643 4788888888
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCh------hHHHHHHHHHHH-HcCCCC-hhHHHHHHHHh--
Q 048321 117 AQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHL------SLLKSVHSFGIH-IGVDAD-VSVCNTWISSY-- 186 (641)
Q Consensus 117 ~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~------~~a~~~~~~~~~-~~~~~~-~~~~~~ll~~~-- 186 (641)
...++++.+..+|.+.....+..| .|..-+.-..+.+.. ....+.++..+. .+++|- ...|+..+...
T Consensus 87 LA~~df~svE~lf~rCL~k~l~ld--LW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~ 164 (660)
T COG5107 87 LARKDFRSVESLFGRCLKKSLNLD--LWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEY 164 (660)
T ss_pred hhhhhHHHHHHHHHHHHhhhccHh--HHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHh
Confidence 888999999999999887655444 444444433332211 122233444433 234432 23344333222
Q ss_pred -HcCC------ChhHHHHHHhcccCCCCC--chhH------HHHHHHHhcC---C----CchHHHHHHHHHHH--CCCCC
Q 048321 187 -AKCD------DLKMAELVFCGIEERLRT--VVSW------NSMVAGCTYG---D----KFDDSLNFYRHMMY--NGFRL 242 (641)
Q Consensus 187 -~~~g------~~~~A~~~~~~~~~~~~~--~~~~------~~li~~~~~~---g----~~~~A~~~~~~m~~--~g~~p 242 (641)
-..| ++|..+..+.++...|-+ ...| ..=++..... | -+-.|...+++... .|.+.
T Consensus 165 ~~~~~kwEeQqrid~iR~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v 244 (660)
T COG5107 165 IEELGKWEEQQRIDKIRNGYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSV 244 (660)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccc
Confidence 2223 344555566665543111 1112 1111111110 1 13455666666543 24321
Q ss_pred ----ChhhHHHHHH-----------HhcCC-----Cc--hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 048321 243 ----DVTTVVSLLS-----------SFVCP-----EA--LVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARV 300 (641)
Q Consensus 243 ----~~~t~~~ll~-----------~~~~~-----~~--~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 300 (641)
+..|++.+-+ .=... ++ .....-+|++.+.. +.-...+|----.-+...++-+.|+.
T Consensus 245 ~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~ 323 (660)
T COG5107 245 KNPINLRTANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALK 323 (660)
T ss_pred cCchhhhhhccccccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHH
Confidence 2233332111 10000 00 11111122222211 11122222222233344566666766
Q ss_pred HHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhc---CcCchHHHHHHHHHHHHcCCC
Q 048321 301 LFDGICDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCG---QSGALELGKWFDNYACSGGLK 377 (641)
Q Consensus 301 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~---~~~~~~~a~~~~~~~~~~~~~ 377 (641)
..+.-.+-.+...--+-..|--..+.+.....|++..+. ...-.+.+.+-+ .-|+.+.-.+++ .+. ..
T Consensus 324 tv~rg~~~spsL~~~lse~yel~nd~e~v~~~fdk~~q~-----L~r~ys~~~s~~~s~~D~N~e~~~Ell---~kr-~~ 394 (660)
T COG5107 324 TVERGIEMSPSLTMFLSEYYELVNDEEAVYGCFDKCTQD-----LKRKYSMGESESASKVDNNFEYSKELL---LKR-IN 394 (660)
T ss_pred HHHhcccCCCchheeHHHHHhhcccHHHHhhhHHHHHHH-----HHHHHhhhhhhhhccccCCccccHHHH---HHH-Hh
Confidence 665442222221112233444455555555566554321 000000111111 112232221111 111 11
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhH-HH
Q 048321 378 DNVMVCNALIDMYSKCGSIGDARELFYALPE-----KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTF-LA 451 (641)
Q Consensus 378 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ 451 (641)
.-..+|..+++.-.+..-++.|+.+|-++.+ +++..+++++.-++. |+..-|..+|+--... -||...| .-
T Consensus 395 k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~k 471 (660)
T COG5107 395 KLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEK 471 (660)
T ss_pred hhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHH
Confidence 2345778888888888889999999988765 577889999987764 7888999999876664 5666544 45
Q ss_pred HHHHHhccCChHHHHHHHHHHHhhhCCCCCCC--hhHHHHHHHHhhccCChHHHHHHHHhCC-CCCChhHHHHHHHHHH
Q 048321 452 VLQACTHTGFLEKGWAISIIQYDDKGISYNPE--LDHYSCMADLLGRKGKLKEALDFVQSMP-IKSDAGIWGTLLCACK 527 (641)
Q Consensus 452 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~ll~~~~ 527 (641)
.+.-+...++-+.|+.+|+..+.+. ..+ ...|..+|+--..-|++..+..+=+.+. .-|...+.....+-|.
T Consensus 472 yl~fLi~inde~naraLFetsv~r~----~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~Sry~ 546 (660)
T COG5107 472 YLLFLIRINDEENARALFETSVERL----EKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHHHHhCcHHHHHHHHHHhHHHH----HHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHHHHh
Confidence 5667778899999999999777542 233 5679999998889999988877766664 3344333333344443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.79 Score=46.74 Aligned_cols=45 Identities=24% Similarity=0.226 Sum_probs=19.9
Q ss_pred hhccCChHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Q 048321 494 LGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHLNIEIGEYVAYC 541 (641)
Q Consensus 494 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 541 (641)
..+.|+++.|.++.++.. +...|..|.......|+.+.|++++++
T Consensus 328 Al~lg~L~~A~~~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k 372 (443)
T PF04053_consen 328 ALQLGNLDIALEIAKELD---DPEKWKQLGDEALRQGNIELAEECYQK 372 (443)
T ss_dssp HHHCT-HHHHHHHCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 334444444444443322 334444444444444444444444443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.88 E-value=2.8 Score=35.12 Aligned_cols=86 Identities=12% Similarity=0.147 Sum_probs=55.4
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHHcCCCChhHHHHHHHHhHcCCChhHHHHHHhcccCCCCCchhHHHHHHHHhcCC
Q 048321 144 VMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISSYAKCDDLKMAELVFCGIEERLRTVVSWNSMVAGCTYGD 223 (641)
Q Consensus 144 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g 223 (641)
...++..+...+.......+++.+.+.+. .+...++.++..|++... ......+.. . .+......+++.|.+.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~--~--~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN--K--SNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh--c--cccCCHHHHHHHHHHcC
Confidence 44566667667778888888888887763 577788888888887543 333444442 1 33344445666666666
Q ss_pred CchHHHHHHHHH
Q 048321 224 KFDDSLNFYRHM 235 (641)
Q Consensus 224 ~~~~A~~~~~~m 235 (641)
.++++.-++.++
T Consensus 84 l~~~~~~l~~k~ 95 (140)
T smart00299 84 LYEEAVELYKKD 95 (140)
T ss_pred cHHHHHHHHHhh
Confidence 666666666555
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.6 Score=42.89 Aligned_cols=110 Identities=12% Similarity=0.082 Sum_probs=83.6
Q ss_pred HHHHHhhCC--CCChhHHHHHHHHHHHc-----CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCC----------
Q 048321 399 ARELFYALP--EKIVVSWTTMIAGCALN-----GEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGF---------- 461 (641)
Q Consensus 399 A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~---------- 461 (641)
.++.|.... ++|-.+|-+++..+..+ +..+-....++.|.+.|+.-|..+|+.||..+-+...
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 345666666 56778888888877653 5667777788999999999999999999998766432
Q ss_pred ------hHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChH-HHHHHHHhCC
Q 048321 462 ------LEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLK-EALDFVQSMP 511 (641)
Q Consensus 462 ------~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~ 511 (641)
-+-++.++++|. .+| +.||.++-..+++++++.|..- +...+.--|+
T Consensus 133 ~HYP~QQ~C~I~vLeqME-~hG--VmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQME-WHG--VMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred hhCchhhhHHHHHHHHHH-HcC--CCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 234788999998 799 9999999999999999998643 3334444443
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.76 E-value=2.9 Score=37.09 Aligned_cols=160 Identities=18% Similarity=0.145 Sum_probs=85.7
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHH
Q 048321 412 VSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNR-VTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCM 490 (641)
Q Consensus 412 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l 490 (641)
..||-+.--+...|+++.|.+.|+...+. .|.. .++..-.-++.-.|+++-|.+-|...-+..+ -.|-...|--+
T Consensus 100 ~vfNyLG~Yl~~a~~fdaa~eaFds~~EL--Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~--~DPfR~LWLYl 175 (297)
T COG4785 100 EVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDP--NDPFRSLWLYL 175 (297)
T ss_pred HHHHHHHHHHHhcccchHHHHHhhhHhcc--CCcchHHHhccceeeeecCchHhhHHHHHHHHhcCC--CChHHHHHHHH
Confidence 46666666667777777777777777764 3322 2222222234456777777666665554333 22333333222
Q ss_pred HHHhhccCChHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCC-------CccHHHHHHHHHhc
Q 048321 491 ADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHS-------AAPYVEMANKYALG 563 (641)
Q Consensus 491 ~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~ 563 (641)
+ .+.-+..+|..-+.+--.+.|..-|...+-.+.-..-.+ +.+++++..-..++ .++|.-++.-|...
T Consensus 176 ~---E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~--e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~ 250 (297)
T COG4785 176 N---EQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISE--ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSL 250 (297)
T ss_pred H---HhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccH--HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcc
Confidence 2 233455555543322112334455655544443222111 12223332221122 46788999999999
Q ss_pred CCchHHHHHHHHHHhCC
Q 048321 564 GRWDGVANIRTMMKRNQ 580 (641)
Q Consensus 564 g~~~eA~~~~~~m~~~~ 580 (641)
|..++|..+++......
T Consensus 251 G~~~~A~~LfKLaiann 267 (297)
T COG4785 251 GDLDEATALFKLAVANN 267 (297)
T ss_pred ccHHHHHHHHHHHHHHh
Confidence 99999999998876543
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=93.74 E-value=2.3 Score=36.04 Aligned_cols=96 Identities=14% Similarity=0.022 Sum_probs=61.4
Q ss_pred HHhccCChHHHHHHHHHHHhhhCCCCCCCh-hHHHHHHHHhhccCChHHHHHHHHhCC-CCCChhHHHHHHHHHHHcCCH
Q 048321 455 ACTHTGFLEKGWAISIIQYDDKGISYNPEL-DHYSCMADLLGRKGKLKEALDFVQSMP-IKSDAGIWGTLLCACKIHLNI 532 (641)
Q Consensus 455 ~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~ll~~~~~~g~~ 532 (641)
.-...++.+++..+++.+.- +.|.. ..-..-+-.+.+.|++.+|+.+|+++. ..|....-.+|+..|.....-
T Consensus 19 ~al~~~~~~D~e~lL~ALrv-----LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALRV-----LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD 93 (160)
T ss_pred HHHccCChHHHHHHHHHHHH-----hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence 33566788888888888775 33442 222333455678889999999998877 445555667777777665554
Q ss_pred HHHHHHHHHhHccCCCCCccHHHH
Q 048321 533 EIGEYVAYCLFKLEPHSAAPYVEM 556 (641)
Q Consensus 533 ~~a~~~~~~~~~~~p~~~~~~~~l 556 (641)
..=....+++++..|+ +.+-..+
T Consensus 94 ~~Wr~~A~evle~~~d-~~a~~Lv 116 (160)
T PF09613_consen 94 PSWRRYADEVLESGAD-PDARALV 116 (160)
T ss_pred hHHHHHHHHHHhcCCC-hHHHHHH
Confidence 5556667777777664 4443333
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.62 E-value=1.6 Score=36.12 Aligned_cols=113 Identities=15% Similarity=0.009 Sum_probs=62.1
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCC---hhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHh
Q 048321 418 IAGCALNGEFVEALDLFHQLMELDLRPN---RVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLL 494 (641)
Q Consensus 418 i~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~ 494 (641)
.....+.|++++|.+.|+.+...- +.. ...-..++.++.+.+++++|...+++.++.++ -.|++ .|.....++
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ry-P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP--~hp~v-dYa~Y~~gL 92 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRY-PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHP--THPNV-DYAYYMRGL 92 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcC-CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CCCCc-cHHHHHHHH
Confidence 334456677777777777777651 111 12445566677777777777777777776555 44442 333333333
Q ss_pred hccCChHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCC
Q 048321 495 GRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHS 549 (641)
Q Consensus 495 ~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 549 (641)
+.-...+.++. .+. ..=+..+....|...|++++..-|++
T Consensus 93 ~~~~~~~~~~~---~~~------------~~drD~~~~~~A~~~f~~lv~~yP~S 132 (142)
T PF13512_consen 93 SYYEQDEGSLQ---SFF------------RSDRDPTPARQAFRDFEQLVRRYPNS 132 (142)
T ss_pred HHHHHhhhHHh---hhc------------ccccCcHHHHHHHHHHHHHHHHCcCC
Confidence 32222221111 111 01111223567888889999999974
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=93.53 E-value=0.11 Score=48.66 Aligned_cols=113 Identities=12% Similarity=-0.058 Sum_probs=77.5
Q ss_pred HHHHhccCChHHHHHHHHHHHhhhCCCCCC-ChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHc
Q 048321 453 LQACTHTGFLEKGWAISIIQYDDKGISYNP-ELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIH 529 (641)
Q Consensus 453 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~ 529 (641)
.+-|.++|.+++|+..|..... ..| +..++..-..+|.+..++..|+.=.+... .+.-...|..-+.+-...
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia-----~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA-----VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESL 178 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc-----cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 4567788999999999988775 345 67777777788888888887776665543 111223444445555567
Q ss_pred CCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHH
Q 048321 530 LNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRT 574 (641)
Q Consensus 530 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~ 574 (641)
|+..+|.+-++.+++++|++ ..|-..|.+..-..|+.-+.+
T Consensus 179 g~~~EAKkD~E~vL~LEP~~----~ELkK~~a~i~Sl~E~~I~~K 219 (536)
T KOG4648|consen 179 GNNMEAKKDCETVLALEPKN----IELKKSLARINSLRERKIATK 219 (536)
T ss_pred hhHHHHHHhHHHHHhhCccc----HHHHHHHHHhcchHhhhHHhh
Confidence 88889999999999999984 345555666555666554443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.39 E-value=6.3 Score=36.22 Aligned_cols=137 Identities=18% Similarity=0.118 Sum_probs=85.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCC-CC-ChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHh
Q 048321 417 MIAGCALNGEFVEALDLFHQLMELDL-RP-NRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLL 494 (641)
Q Consensus 417 li~~~~~~g~~~~A~~~~~~m~~~g~-~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~ 494 (641)
-+..-.+.|++++|.+.|+.+..... .| ...+...++-++.+.+++++|....++..+.+| -.|++. |...+.++
T Consensus 40 ~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP--~~~n~d-Y~~YlkgL 116 (254)
T COG4105 40 EGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYP--THPNAD-YAYYLKGL 116 (254)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC--CCCChh-HHHHHHHH
Confidence 34445678999999999999987521 11 223566666788889999999999999988877 666653 33333333
Q ss_pred hccCChHHHHHHHHhCC-CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCC-----------------CccHHHH
Q 048321 495 GRKGKLKEALDFVQSMP-IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHS-----------------AAPYVEM 556 (641)
Q Consensus 495 ~~~g~~~~A~~~~~~~~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-----------------~~~~~~l 556 (641)
+ .|..+. ..-|.. -...|...++.++..-|++ ..+=..+
T Consensus 117 s----------~~~~i~~~~rDq~-------------~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~I 173 (254)
T COG4105 117 S----------YFFQIDDVTRDQS-------------AARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAI 173 (254)
T ss_pred H----------HhccCCccccCHH-------------HHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 3 111111 011110 1123333344444444442 2333467
Q ss_pred HHHHHhcCCchHHHHHHHHHHhC
Q 048321 557 ANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 557 ~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
++.|.+.|.|..|..-+++|.+.
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLEN 196 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhc
Confidence 88999999999999999999875
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.38 E-value=0.12 Score=31.27 Aligned_cols=26 Identities=8% Similarity=0.142 Sum_probs=21.0
Q ss_pred cHHHHHHHHHhcCCchHHHHHHHHHH
Q 048321 552 PYVEMANKYALGGRWDGVANIRTMMK 577 (641)
Q Consensus 552 ~~~~l~~~~~~~g~~~eA~~~~~~m~ 577 (641)
+|..|+++|.+.|+|++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36788999999999999999988843
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.38 E-value=0.21 Score=39.92 Aligned_cols=56 Identities=14% Similarity=-0.009 Sum_probs=51.5
Q ss_pred HHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 524 CACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 524 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
-+....|+.+.|++.|.+++.+-|.+++.|...+..|.-+|+.++|.+-+++..+-
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL 106 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALEL 106 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHh
Confidence 35678899999999999999999999999999999999999999999998887763
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.27 E-value=1.8 Score=44.19 Aligned_cols=156 Identities=13% Similarity=0.040 Sum_probs=92.9
Q ss_pred HHHhcCChhHHHHHHH--HHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHHcCCCChhHHHHHHHHhHcCCCh
Q 048321 115 GFAQMGFLENVLRLFY--NMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISSYAKCDDL 192 (641)
Q Consensus 115 ~~~~~g~~~~a~~l~~--~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 192 (641)
...-.++++.+.+... ++.. .++ ..-...+++-+.+.|..+.|.++-.. +. .-.+...++|++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~-~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D---------~~---~rFeLAl~lg~L 334 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLP-NIP--KDQGQSIARFLEKKGYPELALQFVTD---------PD---HRFELALQLGNL 334 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-H
T ss_pred HHHHcCChhhhhhhhhhhhhcc-cCC--hhHHHHHHHHHHHCCCHHHHHhhcCC---------hH---HHhHHHHhcCCH
Confidence 3455778888776664 1111 122 33467777778888888888776432 21 234566788999
Q ss_pred hHHHHHHhcccCCCCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCchHHHHHHHHHHHH
Q 048321 193 KMAELVFCGIEERLRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVVSLLSSFVCPEALVQGRLVHSHGIH 272 (641)
Q Consensus 193 ~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 272 (641)
+.|.++-++. .+...|..|.....+.|+++-|.+.|++..+ |..|+-.+...|+.+.-.++......
T Consensus 335 ~~A~~~a~~~----~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 335 DIALEIAKEL----DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp HHHHHHCCCC----STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhc----CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 9998887766 4577899999999999999999999988643 44555555566776666666666655
Q ss_pred hCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc
Q 048321 273 YGFDLDVSVINTLISMYSKCGDIDSARVLFDG 304 (641)
Q Consensus 273 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 304 (641)
.|- +|....++.-.|++++..+++.+
T Consensus 402 ~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 402 RGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp TT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred ccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 541 33344444555666666655543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=92.90 E-value=0.16 Score=30.15 Aligned_cols=31 Identities=13% Similarity=-0.086 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhHccCCC
Q 048321 518 IWGTLLCACKIHLNIEIGEYVAYCLFKLEPH 548 (641)
Q Consensus 518 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 548 (641)
+|..+...+...|++++|...++++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4566667777777777777777777777774
|
... |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=92.46 E-value=0.69 Score=39.09 Aligned_cols=70 Identities=10% Similarity=-0.026 Sum_probs=30.6
Q ss_pred ccCChHHHHHHHHhCC-CCCChhHHHHH-HHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCC
Q 048321 496 RKGKLKEALDFVQSMP-IKSDAGIWGTL-LCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGR 565 (641)
Q Consensus 496 ~~g~~~~A~~~~~~~~-~~p~~~~~~~l-l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 565 (641)
+.++.+++..++..+. ..|.......+ ...+...|++.+|+++++.+.+-.|..+..-.+++.++...|+
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD 93 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence 4445555555554444 33433322221 2223444555555555555444444444444444444444443
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=92.32 E-value=0.79 Score=37.98 Aligned_cols=52 Identities=13% Similarity=-0.001 Sum_probs=35.6
Q ss_pred cCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048321 529 HLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRNQ 580 (641)
Q Consensus 529 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~~ 580 (641)
.++.+.++.++..+.-+.|+.++.-..-++++...|+|+||.++++.+.+.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 5666666777776666777766666666777777777777777776666544
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=92.03 E-value=5.1 Score=38.51 Aligned_cols=126 Identities=13% Similarity=0.033 Sum_probs=57.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCC-CC----hhhHHHHHHHHhccCChHHHHHHHHHHHh---hhCCCCCCChhHHH
Q 048321 417 MIAGCALNGEFVEALDLFHQLMELDLR-PN----RVTFLAVLQACTHTGFLEKGWAISIIQYD---DKGISYNPELDHYS 488 (641)
Q Consensus 417 li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~p~~~~~~ 488 (641)
|..++.-.+.++++++.|+....---. -| ...+..+-+-|....++++|.-+...+.+ ..+ +..-..-|.
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~--l~d~~~kyr 205 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYG--LKDWSLKYR 205 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcC--cCchhHHHH
Confidence 444555555566666666655441101 11 12455555555666666665544333321 122 111112222
Q ss_pred H-----HHHHhhccCChHHHHHHHHhCC----CCCChh----HHHHHHHHHHHcCCHHHHHHHHHHhHc
Q 048321 489 C-----MADLLGRKGKLKEALDFVQSMP----IKSDAG----IWGTLLCACKIHLNIEIGEYVAYCLFK 544 (641)
Q Consensus 489 ~-----l~~~~~~~g~~~~A~~~~~~~~----~~p~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~ 544 (641)
+ |.-+|-..|++-+|.+..++.. ...|.. ....+...|+..|+.+.|..-++.+..
T Consensus 206 ~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 206 AMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 2 2234445555555555554432 222222 334455556666666666655555443
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.97 E-value=6.5 Score=42.26 Aligned_cols=27 Identities=11% Similarity=0.251 Sum_probs=13.3
Q ss_pred ChhHHHHHHHHhhccCChHHHHHHHHh
Q 048321 483 ELDHYSCMADLLGRKGKLKEALDFVQS 509 (641)
Q Consensus 483 ~~~~~~~l~~~~~~~g~~~~A~~~~~~ 509 (641)
+..+-+.|+.+|.+.++.+.-.++++.
T Consensus 430 ~~dhttlLLncYiKlkd~~kL~efI~~ 456 (933)
T KOG2114|consen 430 NSDHTTLLLNCYIKLKDVEKLTEFISK 456 (933)
T ss_pred cchhHHHHHHHHHHhcchHHHHHHHhc
Confidence 344444555555555555554444444
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=91.83 E-value=1.7 Score=35.25 Aligned_cols=26 Identities=12% Similarity=-0.015 Sum_probs=12.6
Q ss_pred HHHHHHcCCHHHHHHHHHHhHccCCC
Q 048321 523 LCACKIHLNIEIGEYVAYCLFKLEPH 548 (641)
Q Consensus 523 l~~~~~~g~~~~a~~~~~~~~~~~p~ 548 (641)
.-+|.+.++++.++++.+.+++.+|+
T Consensus 78 Avg~yRlkeY~~s~~yvd~ll~~e~~ 103 (149)
T KOG3364|consen 78 AVGHYRLKEYSKSLRYVDALLETEPN 103 (149)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhhCCC
Confidence 33444445555555555555554444
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=91.79 E-value=15 Score=36.56 Aligned_cols=151 Identities=13% Similarity=-0.025 Sum_probs=84.4
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC---ChhhHHHHHHHHhccCChHHHHHHHHHHHh-hhCCCCCCCh
Q 048321 409 KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRP---NRVTFLAVLQACTHTGFLEKGWAISIIQYD-DKGISYNPEL 484 (641)
Q Consensus 409 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~~~~p~~ 484 (641)
....+|..++..+.+.|+++.|...+.++...+..+ +......-.......|+-.+|...++.... ... -..+.
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~--~~~~~ 221 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLS--KNIDS 221 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh--hcccc
Confidence 345688889999999999999999999988754222 233444445566677888899888887775 211 01011
Q ss_pred hHHHHHHHHhhccCChHHHHHH-HHhCCCCCChhHHHHHHHHHHHc------CCHHHHHHHHHHhHccCCCCCccHHHHH
Q 048321 485 DHYSCMADLLGRKGKLKEALDF-VQSMPIKSDAGIWGTLLCACKIH------LNIEIGEYVAYCLFKLEPHSAAPYVEMA 557 (641)
Q Consensus 485 ~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~ll~~~~~~------g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 557 (641)
.....+...+.. ..+..... ........-...+..+..-+... ++.+.+...++++.++.|.....|..++
T Consensus 222 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a 299 (352)
T PF02259_consen 222 ISNAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWA 299 (352)
T ss_pred ccHHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHH
Confidence 111111111100 00000000 00000000012333333333344 7889999999999999998877888777
Q ss_pred HHHHhc
Q 048321 558 NKYALG 563 (641)
Q Consensus 558 ~~~~~~ 563 (641)
..+.+.
T Consensus 300 ~~~~~~ 305 (352)
T PF02259_consen 300 LFNDKL 305 (352)
T ss_pred HHHHHH
Confidence 766543
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=91.73 E-value=2.6 Score=36.96 Aligned_cols=96 Identities=14% Similarity=0.091 Sum_probs=69.5
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChh--hHHHHHHHHhccCChhHHHHHHHHHHHHcCCCC-h------h
Q 048321 107 ASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFV--TVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDAD-V------S 177 (641)
Q Consensus 107 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~--t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~------~ 177 (641)
..+..+...|.+.|+.+.|++.|.++.+....|... .+..+++.+...+++..+.....++...--.+. . .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 468889999999999999999999999876555543 478889999999999999888877765432222 2 2
Q ss_pred HHHHHHHHhHcCCChhHHHHHHhcccC
Q 048321 178 VCNTWISSYAKCDDLKMAELVFCGIEE 204 (641)
Q Consensus 178 ~~~~ll~~~~~~g~~~~A~~~~~~~~~ 204 (641)
+|..|. +...+++..|-+.|-....
T Consensus 117 ~~~gL~--~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 117 VYEGLA--NLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHH--HHHhchHHHHHHHHHccCc
Confidence 222222 2345788888888766654
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=91.68 E-value=0.023 Score=48.21 Aligned_cols=53 Identities=9% Similarity=-0.026 Sum_probs=25.2
Q ss_pred HHHHhccCChhHHHHHHHHHHHHcCCCChhHHHHHHHHhHcCCChhHHHHHHh
Q 048321 148 TQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISSYAKCDDLKMAELVFC 200 (641)
Q Consensus 148 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~ 200 (641)
+..+.+.+.+.....+++.+...+...+....+.|+..|++.++.+...++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 33344444444444445554444433445555555555555555555555544
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=91.58 E-value=13 Score=35.51 Aligned_cols=235 Identities=11% Similarity=0.007 Sum_probs=95.2
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCh----hHHHHHHHHHHHcCCCCCHHHHHHHH
Q 048321 277 LDVSVINTLISMYSKCGDIDSARVLFDGICDRTRVSWTAMISGYAQKGDL----DEALRLFFAMEAAGELPDLVTVLSMI 352 (641)
Q Consensus 277 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~~~~p~~~t~~~ll 352 (641)
+|..+....+..+...|..+-...+..-+..+|...=...+.++.+.|+. .++...+..+... .|+...-...+
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~ 112 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAI 112 (280)
T ss_pred CCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHH
Confidence 34444444445555444433222222222333444444444555555542 3455555555332 34444333444
Q ss_pred HHhcCcCchH--HHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcC-ChHH
Q 048321 353 SGCGQSGALE--LGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKIVVSWTTMIAGCALNG-EFVE 429 (641)
Q Consensus 353 ~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~ 429 (641)
.++...+... ........+...-..++..+-...+.++++.++.+....+..-+..+|...-...+.++.+.+ ....
T Consensus 113 ~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~ 192 (280)
T PRK09687 113 NATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPD 192 (280)
T ss_pred HHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHH
Confidence 4443332110 001111112111113344555555555555555333333333333344433333344444332 1234
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHh
Q 048321 430 ALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQS 509 (641)
Q Consensus 430 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 509 (641)
+...+..+.. .+|...-...+.++.+.|+ ..+...+-...+ . ++ .....+.+++..|.. +|+..+..
T Consensus 193 ~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~-~-----~~--~~~~a~~ALg~ig~~-~a~p~L~~ 259 (280)
T PRK09687 193 IREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELK-K-----GT--VGDLIIEAAGELGDK-TLLPVLDT 259 (280)
T ss_pred HHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHc-C-----Cc--hHHHHHHHHHhcCCH-hHHHHHHH
Confidence 4444444443 3444444455555555554 233333333331 1 11 122344555555553 45544444
Q ss_pred CC-CCCChhHHHHHHHHH
Q 048321 510 MP-IKSDAGIWGTLLCAC 526 (641)
Q Consensus 510 ~~-~~p~~~~~~~ll~~~ 526 (641)
+. ..||..+-...+.+|
T Consensus 260 l~~~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 260 LLYKFDDNEIITKAIDKL 277 (280)
T ss_pred HHhhCCChhHHHHHHHHH
Confidence 43 234444444333333
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.38 E-value=20 Score=37.25 Aligned_cols=179 Identities=14% Similarity=0.068 Sum_probs=93.4
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCCCC---CcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 048321 278 DVSVINTLISMYSKCGDIDSARVLFDGICDR---TRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISG 354 (641)
Q Consensus 278 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~ 354 (641)
+..+|..-++.-.+.|+.+...-+|++..-| =...|--.+.-....|+.+-|-.++..-.+-.++-.+.+-..--.-
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 3456777777777778888877777776333 2224444444444457777777666655443332222221111112
Q ss_pred hcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH---HHHhhCCC--CChhHHHHHHHH-----HHHc
Q 048321 355 CGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDAR---ELFYALPE--KIVVSWTTMIAG-----CALN 424 (641)
Q Consensus 355 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~---~~~~~~~~--~~~~~~~~li~~-----~~~~ 424 (641)
+-..|+...|..+++.+...- +.-..+-..-+.+..+.|+.+.+. .++..... .+....+.+.-- +.-.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~ 454 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIR 454 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHh
Confidence 334567777777777776643 222333333455566667777666 33333322 122222222211 2224
Q ss_pred CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhc
Q 048321 425 GEFVEALDLFHQLMELDLRPNRVTFLAVLQACTH 458 (641)
Q Consensus 425 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 458 (641)
++.+.|..++.++.+. ++++...|..++.-+..
T Consensus 455 ~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~ 487 (577)
T KOG1258|consen 455 EDADLARIILLEANDI-LPDCKVLYLELIRFELI 487 (577)
T ss_pred cCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHh
Confidence 6667777777777664 34444555555554433
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=91.30 E-value=6.9 Score=31.79 Aligned_cols=62 Identities=13% Similarity=0.190 Sum_probs=32.9
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCC
Q 048321 314 TAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGL 376 (641)
Q Consensus 314 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 376 (641)
+.-+......|+-+.-.+++.++.+. -.+++..+..+..+|.+.|+..++..++..+-+.|+
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 34455556666666666666665542 245555566666666666666666666666666553
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=91.13 E-value=19 Score=39.02 Aligned_cols=86 Identities=13% Similarity=0.094 Sum_probs=43.5
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcC-CCCchhHHHHHHHHHHh---c
Q 048321 318 SGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGG-LKDNVMVCNALIDMYSK---C 393 (641)
Q Consensus 318 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~---~ 393 (641)
..+.-.|+++.|++.+.+ ..+...|.+.+...+..+.-..-.+... ..+.... -.|.+.-+..||..|.+ .
T Consensus 266 ~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~ 340 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEI 340 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTT
T ss_pred HHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhc
Confidence 445668999999998876 3345677788887777664433222211 2222211 11222556778888876 4
Q ss_pred CCHHHHHHHHhhCCC
Q 048321 394 GSIGDARELFYALPE 408 (641)
Q Consensus 394 g~~~~A~~~~~~~~~ 408 (641)
.+..+|.+.|--+..
T Consensus 341 td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 341 TDPREALQYLYLICL 355 (613)
T ss_dssp T-HHHHHHHHHGGGG
T ss_pred cCHHHHHHHHHHHHH
Confidence 577888888776654
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.07 E-value=0.34 Score=29.29 Aligned_cols=28 Identities=11% Similarity=-0.149 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhHcc
Q 048321 518 IWGTLLCACKIHLNIEIGEYVAYCLFKL 545 (641)
Q Consensus 518 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 545 (641)
+|..|...|...|++++|+.++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3667778888888888888888885544
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=91.05 E-value=4.1 Score=35.78 Aligned_cols=57 Identities=14% Similarity=0.206 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCCC------hhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 048321 382 VCNALIDMYSKCGSIGDARELFYALPEKI------VVSWTTMIAGCALNGEFVEALDLFHQLM 438 (641)
Q Consensus 382 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~ 438 (641)
.+..+.+.|++.|+.+.|.+.|.++.+.. +..+-.+|......|++..+.....+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34445555555555555555555544421 1233444444444455555554444443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=90.90 E-value=0.043 Score=46.48 Aligned_cols=87 Identities=8% Similarity=0.002 Sum_probs=54.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHHcCCCChhHHHHHHHHhHcCC
Q 048321 111 AMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISSYAKCD 190 (641)
Q Consensus 111 ~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 190 (641)
.+|..+.+.+.+......++.+...+..-+....+.++..+++.+..+....+++ ..+.+-...+++.+.+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~-------~~~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK-------TSNNYDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT-------SSSSS-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc-------cccccCHHHHHHHHHhcc
Confidence 4567777777888888888888776655566677778888887766666666555 112233344556666666
Q ss_pred ChhHHHHHHhcccC
Q 048321 191 DLKMAELVFCGIEE 204 (641)
Q Consensus 191 ~~~~A~~~~~~~~~ 204 (641)
.+++|.-++.++..
T Consensus 85 l~~~a~~Ly~~~~~ 98 (143)
T PF00637_consen 85 LYEEAVYLYSKLGN 98 (143)
T ss_dssp SHHHHHHHHHCCTT
T ss_pred hHHHHHHHHHHccc
Confidence 66666666655544
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.80 E-value=1.2 Score=41.88 Aligned_cols=76 Identities=7% Similarity=0.019 Sum_probs=62.8
Q ss_pred hHHHHHHHHhHcCCChhHHHHHHhcccCC-CCCchhHHHHHHHHhcCCCchHHHHHHHHHHH-----CCCCCChhhHHHH
Q 048321 177 SVCNTWISSYAKCDDLKMAELVFCGIEER-LRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMY-----NGFRLDVTTVVSL 250 (641)
Q Consensus 177 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~~l 250 (641)
.++..++..+..+|+++.+...++++... +-+...|..++.+|.+.|+...|+..|+++.. .|+.|...+....
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 46677889999999999999999998886 67889999999999999999999999999866 3666665554443
Q ss_pred HH
Q 048321 251 LS 252 (641)
Q Consensus 251 l~ 252 (641)
..
T Consensus 234 ~~ 235 (280)
T COG3629 234 EE 235 (280)
T ss_pred HH
Confidence 33
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=90.79 E-value=5.2 Score=38.42 Aligned_cols=63 Identities=10% Similarity=0.113 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHcCCCCChh--hHHHHHHHHhccCC--hHHHHHHHHHHHhhhCCCCCCChhHHHHHHHH
Q 048321 428 VEALDLFHQLMELDLRPNRV--TFLAVLQACTHTGF--LEKGWAISIIQYDDKGISYNPELDHYSCMADL 493 (641)
Q Consensus 428 ~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~g~--~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~ 493 (641)
+.+..+|+.+...|+..+.. ....+|..+..... +..+.++++.+. +.| +++...+|..++-+
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~-~~~--~kik~~~yp~lGlL 226 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALK-KNG--VKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHH-HcC--CccccccccHHHHH
Confidence 55677888888888776554 33344443332222 446777777777 457 77777777766543
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=90.73 E-value=49 Score=40.64 Aligned_cols=307 Identities=12% Similarity=0.056 Sum_probs=159.4
Q ss_pred HhcCCCchHHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhcCCHHHHHHHHhc-CCCCCcchHHHHHHHHHhCCChhHH
Q 048321 253 SFVCPEALVQGRLVHSHGIHYGF--DLDVSVINTLISMYSKCGDIDSARVLFDG-ICDRTRVSWTAMISGYAQKGDLDEA 329 (641)
Q Consensus 253 ~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A 329 (641)
+-.+.+.+..|...++.-..... ......+-.+...|+..+++|...-+... ...++ ...-|--....|++..|
T Consensus 1392 aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~~~da 1468 (2382)
T KOG0890|consen 1392 ASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGNWADA 1468 (2382)
T ss_pred HHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhccHHHH
Confidence 44455556666666555210000 01123344444577777777766655542 22222 22334445667888888
Q ss_pred HHHHHHHHHcCCCCC-HHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHH-HHHHHhcCCHHHHHHHHhhCC
Q 048321 330 LRLFFAMEAAGELPD-LVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNAL-IDMYSKCGSIGDARELFYALP 407 (641)
Q Consensus 330 ~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~ 407 (641)
...|+.+.+. .|+ ..+++.++......+.++...-..+...... .+...-++.+ +.+-.+.++++.......
T Consensus 1469 ~~Cye~~~q~--~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~--- 1542 (2382)
T KOG0890|consen 1469 AACYERLIQK--DPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS--- 1542 (2382)
T ss_pred HHHHHHhhcC--CCccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh---
Confidence 8888888765 344 5566666666666676666655444433322 3333333333 444466777776666655
Q ss_pred CCChhHHHHH-H-HHHHHc--CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHH----------HHHH
Q 048321 408 EKIVVSWTTM-I-AGCALN--GEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAIS----------IIQY 473 (641)
Q Consensus 408 ~~~~~~~~~l-i-~~~~~~--g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~----------~~~~ 473 (641)
..+..+|.+. + ..+.+. .+.-.-.++.+.+++.-+.| +.+|+..|.+..+.++. ....
T Consensus 1543 ~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~--------lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~ 1614 (2382)
T KOG0890|consen 1543 DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIEN--------LSACSIEGSYVRSYEILMKLHLLLELENSIE 1614 (2382)
T ss_pred cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhh--------HHHhhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556554 2 222222 12112223344443321111 12222222221211111 1111
Q ss_pred hhhCCCCCCC------hhHHHHHHHHhhccCChHHHHHHHHhCC----CCC-----ChhHHHHHHHHHHHcCCHHHHHHH
Q 048321 474 DDKGISYNPE------LDHYSCMADLLGRKGKLKEALDFVQSMP----IKS-----DAGIWGTLLCACKIHLNIEIGEYV 538 (641)
Q Consensus 474 ~~~~~~~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p-----~~~~~~~ll~~~~~~g~~~~a~~~ 538 (641)
...+ ..++ ..-|..-...-....+..+-+--+++.. ..| -..+|......++..|.++.|...
T Consensus 1615 ~l~~--~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~na 1692 (2382)
T KOG0890|consen 1615 ELKK--VSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNA 1692 (2382)
T ss_pred Hhhc--cCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHH
Confidence 1111 2222 1222222221111112222222222211 122 245899999999999999999999
Q ss_pred HHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048321 539 AYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRNQ 580 (641)
Q Consensus 539 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~~ 580 (641)
.-++.+..+ +..+...+..++..|+-..|..++++..+..
T Consensus 1693 ll~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1693 LLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 888888774 6899999999999999999999998877544
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=90.46 E-value=10 Score=37.67 Aligned_cols=65 Identities=15% Similarity=0.143 Sum_probs=55.6
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCC----CCccHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 515 DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPH----SAAPYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 515 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
...+|..+...|++.|.++.|...+.++....+. .+......+.++...|+-.+|...++.....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4558999999999999999999999999886532 4667777899999999999999998887763
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=90.37 E-value=0.32 Score=26.84 Aligned_cols=24 Identities=13% Similarity=0.105 Sum_probs=19.3
Q ss_pred ccHHHHHHHHHhcCCchHHHHHHH
Q 048321 551 APYVEMANKYALGGRWDGVANIRT 574 (641)
Q Consensus 551 ~~~~~l~~~~~~~g~~~eA~~~~~ 574 (641)
.....++.+|...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356778888999999999988765
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.29 E-value=29 Score=37.30 Aligned_cols=38 Identities=16% Similarity=0.320 Sum_probs=24.2
Q ss_pred ccCChHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHH
Q 048321 496 RKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHLNIEIGE 536 (641)
Q Consensus 496 ~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 536 (641)
+.++.++|+++.++ ..|...|..|+..+...-.+-.+.
T Consensus 673 el~die~AIefvKe---q~D~eLWe~LI~~~ldkPe~~~~l 710 (846)
T KOG2066|consen 673 ELRDIEKAIEFVKE---QDDSELWEDLINYSLDKPEFIKAL 710 (846)
T ss_pred HhhCHHHHHHHHHh---cCCHHHHHHHHHHhhcCcHHHHHH
Confidence 33455555555544 568889999998877655544444
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=90.18 E-value=18 Score=34.64 Aligned_cols=98 Identities=8% Similarity=-0.068 Sum_probs=45.4
Q ss_pred HHHHHHHHhcCcCch---HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCC---ChhHHHHHHHH
Q 048321 347 TVLSMISGCGQSGAL---ELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEK---IVVSWTTMIAG 420 (641)
Q Consensus 347 t~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~ 420 (641)
++..++.++...+.. ++|..+.+.+.... +..+.++..-++.+.+.++.+.+.+++.+|... ....+...+..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~ 164 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHH 164 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHH
Confidence 344445555544433 33444444443321 222334444455555566666666666666541 22334444333
Q ss_pred H---HHcCChHHHHHHHHHHHHcCCCCCh
Q 048321 421 C---ALNGEFVEALDLFHQLMELDLRPNR 446 (641)
Q Consensus 421 ~---~~~g~~~~A~~~~~~m~~~g~~p~~ 446 (641)
+ .. .....|...+..+....+.|..
T Consensus 165 i~~l~~-~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 165 IKQLAE-KSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHh-hCcHHHHHHHHHHHHHHhCCCh
Confidence 3 22 2334555666555554444443
|
It is also involved in sporulation []. |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=90.02 E-value=32 Score=37.35 Aligned_cols=166 Identities=10% Similarity=-0.043 Sum_probs=83.6
Q ss_pred CcccHHHHHHHHH-hcCChhHHHHHHHHHHHcCCCCChhh-----HHHHHHHHhccCChhHHHHHHHHHHHHcCC----C
Q 048321 105 DVASWNAMLVGFA-QMGFLENVLRLFYNMRLVGIQADFVT-----VMGLTQAAIHAKHLSLLKSVHSFGIHIGVD----A 174 (641)
Q Consensus 105 ~~~~~~~li~~~~-~~g~~~~a~~l~~~m~~~g~~p~~~t-----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~ 174 (641)
+..++--+...+. ...+++.|...+.+.....-+++..- -..+++.+.+.+... |...++..++.--. +
T Consensus 58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~ 136 (608)
T PF10345_consen 58 EARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSA 136 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchh
Confidence 4455556666665 57778888888886654332222221 223344444444444 77777666553211 1
Q ss_pred ChhHHHHH-HHHhHcCCChhHHHHHHhcccCC---CCC--chhHHHHHHHH--hcCCCchHHHHHHHHHHHCCC------
Q 048321 175 DVSVCNTW-ISSYAKCDDLKMAELVFCGIEER---LRT--VVSWNSMVAGC--TYGDKFDDSLNFYRHMMYNGF------ 240 (641)
Q Consensus 175 ~~~~~~~l-l~~~~~~g~~~~A~~~~~~~~~~---~~~--~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~------ 240 (641)
-...+.-+ +..+...++...|.+.++.+... ..| +..+-.++.+. .+.+..+++++.++++.....
T Consensus 137 w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~ 216 (608)
T PF10345_consen 137 WYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDP 216 (608)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCC
Confidence 22222222 22232336777787777766543 122 23333333332 344556777777776643221
Q ss_pred ---CCChhhHHHHHHHhc--CCCchHHHHHHHHHHH
Q 048321 241 ---RLDVTTVVSLLSSFV--CPEALVQGRLVHSHGI 271 (641)
Q Consensus 241 ---~p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~ 271 (641)
.|-..++..++..++ ..|++..+.+.+..+.
T Consensus 217 ~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 217 SVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred CCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 234455555555543 4555555555544443
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=90.02 E-value=2.7 Score=41.79 Aligned_cols=125 Identities=15% Similarity=0.158 Sum_probs=75.2
Q ss_pred HcCChHHHHH-HHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChH
Q 048321 423 LNGEFVEALD-LFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLK 501 (641)
Q Consensus 423 ~~g~~~~A~~-~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 501 (641)
..|+...|-+ ++.-++...-.|+.+...+. ...+.|.++.+.+.+....... .....+..|++..+.+.|+++
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~~~----~s~~~~~~~~~r~~~~l~r~~ 374 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEKII----GTTDSTLRCRLRSLHGLARWR 374 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhchhhhh----cCCchHHHHHHHhhhchhhHH
Confidence 4566666554 44444444334444444433 3567788888877776655433 355667777777777888888
Q ss_pred HHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccH
Q 048321 502 EALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPY 553 (641)
Q Consensus 502 ~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 553 (641)
+|..+-.-|. .-.++.+...-.......|-++++.-.+++++.++|.....+
T Consensus 375 ~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~ 428 (831)
T PRK15180 375 EALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGW 428 (831)
T ss_pred HHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccc
Confidence 8887777765 112333333334445566777777777777777776533333
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=89.81 E-value=33 Score=37.24 Aligned_cols=115 Identities=8% Similarity=-0.047 Sum_probs=56.2
Q ss_pred CChHHHHHHHHHHHHc-CCCCChh--hHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChH
Q 048321 425 GEFVEALDLFHQLMEL-DLRPNRV--TFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLK 501 (641)
Q Consensus 425 g~~~~A~~~~~~m~~~-g~~p~~~--t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 501 (641)
.+.+.|..++...... ++.+... ....+.......+..+++...++.... ...+......-+..-.+.++++
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~-----~~~~~~~~e~r~r~Al~~~dw~ 329 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIM-----RSQSTSLLERRVRMALGTGDRR 329 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccc-----ccCCcHHHHHHHHHHHHccCHH
Confidence 4557777777766433 2222222 222332222222224555555554331 1123333444444444777777
Q ss_pred HHHHHHHhCCC-CCChhHHHH-HHHHHHHcCCHHHHHHHHHHhHc
Q 048321 502 EALDFVQSMPI-KSDAGIWGT-LLCACKIHLNIEIGEYVAYCLFK 544 (641)
Q Consensus 502 ~A~~~~~~~~~-~p~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~ 544 (641)
.+...|..|+. ..+..-|.- +..+....|+.++|...++++..
T Consensus 330 ~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 330 GLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 77777777761 112222222 33444556777777777777633
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.80 E-value=16 Score=33.65 Aligned_cols=241 Identities=15% Similarity=0.133 Sum_probs=131.0
Q ss_pred CCHHHHHHHHhcCCC----C---CcchHHHHHHHHHhCCChhHHHHHHHHHHH---cCC--CCCHHHHHHHHHHhcCcCc
Q 048321 293 GDIDSARVLFDGICD----R---TRVSWTAMISGYAQKGDLDEALRLFFAMEA---AGE--LPDLVTVLSMISGCGQSGA 360 (641)
Q Consensus 293 g~~~~A~~~~~~~~~----~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~--~p~~~t~~~ll~~~~~~~~ 360 (641)
.++++|+.-|+++.+ + .-.+...+|..+.+.+++++.++.|.+|.. ..+ .-+..+.++++.-.+.+.+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 456666666665521 1 112344567777788888888777777753 111 1233455666665555555
Q ss_pred hHHHHHHHHHHHH-----cCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--------CC-------hhHHHHHHHH
Q 048321 361 LELGKWFDNYACS-----GGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE--------KI-------VVSWTTMIAG 420 (641)
Q Consensus 361 ~~~a~~~~~~~~~-----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~-------~~~~~~li~~ 420 (641)
.+.-..+++.-.+ .+-..-..+-+-|...|...|.+.+..++++++.. .| ...|..-|..
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 5544444443322 11112223334566677777777777777766543 11 2366667777
Q ss_pred HHHcCChHHHHHHHHHHHHcC-CCCChhhHHHHHHHHh-----ccCChHHHHHHHHHHHhhhCCCCCCChh---HHHHHH
Q 048321 421 CALNGEFVEALDLFHQLMELD-LRPNRVTFLAVLQACT-----HTGFLEKGWAISIIQYDDKGISYNPELD---HYSCMA 491 (641)
Q Consensus 421 ~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~-----~~g~~~~a~~~~~~~~~~~~~~~~p~~~---~~~~l~ 491 (641)
|....+-..-..+|++...-. .-|.+ ....+++-|. +.|.+++|..-|-++-+.+...-.|... -|-.|.
T Consensus 201 YT~qKnNKkLK~lYeqalhiKSAIPHP-lImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLA 279 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKSAIPHP-LIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLA 279 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhccCCch-HHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHH
Confidence 877777777777888776532 23433 3444555553 4577877765444444344322234332 255566
Q ss_pred HHhhccCC----hHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHH
Q 048321 492 DLLGRKGK----LKEALDFVQSMPIKSDAGIWGTLLCACKIHLNIEIGEYVA 539 (641)
Q Consensus 492 ~~~~~~g~----~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 539 (641)
+++.+.|- -++|.- ....|.......|+.+|.. ++..+-++++
T Consensus 280 NMLmkS~iNPFDsQEAKP----yKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il 326 (440)
T KOG1464|consen 280 NMLMKSGINPFDSQEAKP----YKNDPEILAMTNLVAAYQN-NDIIEFERIL 326 (440)
T ss_pred HHHHHcCCCCCcccccCC----CCCCHHHHHHHHHHHHHhc-ccHHHHHHHH
Confidence 77776662 222210 0144556677888888865 3444444443
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.69 E-value=12 Score=33.89 Aligned_cols=92 Identities=10% Similarity=0.090 Sum_probs=52.7
Q ss_pred CChHHHHHHHHHHHhhhCCCCCCChhHHHHHH---HHhhccCChHHHHHHHHhCC---CCCChhHHHH---H--HHHHHH
Q 048321 460 GFLEKGWAISIIQYDDKGISYNPELDHYSCMA---DLLGRKGKLKEALDFVQSMP---IKSDAGIWGT---L--LCACKI 528 (641)
Q Consensus 460 g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~---~~~~~~g~~~~A~~~~~~~~---~~p~~~~~~~---l--l~~~~~ 528 (641)
.++++|+..|+..-+=+. +-..+...--|++ ..-+..+++.+|+++|++.. ...+..-|.. + ...|.-
T Consensus 128 ~d~ekaI~~YE~Aae~yk-~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl 206 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYK-GEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHL 206 (288)
T ss_pred HHHHHHHHHHHHHHHHHc-chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhH
Confidence 456666666666653222 0112222223443 33457788999999998864 2222222322 2 233444
Q ss_pred c-CCHHHHHHHHHHhHccCCCCCcc
Q 048321 529 H-LNIEIGEYVAYCLFKLEPHSAAP 552 (641)
Q Consensus 529 ~-g~~~~a~~~~~~~~~~~p~~~~~ 552 (641)
. .|.-.+...+++..+++|.-..+
T Consensus 207 ~~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 207 CKADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred hcccHHHHHHHHHHHHhcCCccccc
Confidence 4 68888889999999999975444
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=89.55 E-value=20 Score=34.30 Aligned_cols=99 Identities=9% Similarity=-0.018 Sum_probs=43.5
Q ss_pred HHHHHHHHhccCChh---HHHHHHHHHHHHcCCCChhHHHHHHHHhHcCCChhHHHHHHhcccCCCC-CchhHHHHHHHH
Q 048321 144 VMGLTQAAIHAKHLS---LLKSVHSFGIHIGVDADVSVCNTWISSYAKCDDLKMAELVFCGIEERLR-TVVSWNSMVAGC 219 (641)
Q Consensus 144 ~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~ 219 (641)
+..++.++...+..+ .+..+++.+... .+..+.++..-+..+.+.++.+++.+.+.+|..... ....+..++..+
T Consensus 87 L~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i 165 (278)
T PF08631_consen 87 LRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHI 165 (278)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHH
Confidence 444455555444433 233334444222 121233333344555556666666666666655411 334444444443
Q ss_pred hc--CCCchHHHHHHHHHHHCCCCCC
Q 048321 220 TY--GDKFDDSLNFYRHMMYNGFRLD 243 (641)
Q Consensus 220 ~~--~g~~~~A~~~~~~m~~~g~~p~ 243 (641)
-. ......|...+..+...-+.|.
T Consensus 166 ~~l~~~~~~~a~~~ld~~l~~r~~~~ 191 (278)
T PF08631_consen 166 KQLAEKSPELAAFCLDYLLLNRFKSS 191 (278)
T ss_pred HHHHhhCcHHHHHHHHHHHHHHhCCC
Confidence 11 1223445555555544433333
|
It is also involved in sporulation []. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.52 E-value=4 Score=38.36 Aligned_cols=98 Identities=15% Similarity=0.262 Sum_probs=71.5
Q ss_pred cCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC-C--------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 048321 374 GGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE-K--------IVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRP 444 (641)
Q Consensus 374 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 444 (641)
.|.+....+...++..-....+++++...+-.+.. + ...+|-.++. .=++++++.++..=++.|+-|
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchhcccc
Confidence 34455555556666666667788888888776654 2 2233333332 336789999999999999999
Q ss_pred ChhhHHHHHHHHhccCChHHHHHHHHHHHhh
Q 048321 445 NRVTFLAVLQACTHTGFLEKGWAISIIQYDD 475 (641)
Q Consensus 445 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 475 (641)
|..+++.+++.+.+.+++.+|.++.-.|...
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999999998887776643
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=89.35 E-value=0.39 Score=28.33 Aligned_cols=29 Identities=7% Similarity=0.072 Sum_probs=24.4
Q ss_pred ccHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 551 APYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 551 ~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
..+..++.+|...|++++|++.+++....
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46788999999999999999999987653
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=89.20 E-value=15 Score=32.32 Aligned_cols=127 Identities=9% Similarity=-0.008 Sum_probs=73.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHH--HHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHH--
Q 048321 414 WTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFL--AVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSC-- 489 (641)
Q Consensus 414 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~-- 489 (641)
|..++.... .+.+ +.....+++....-.....++. .+...+...+++++|...++.... .|.-+.+..
T Consensus 57 Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~------~t~De~lk~l~ 128 (207)
T COG2976 57 YQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALA------QTKDENLKALA 128 (207)
T ss_pred HHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc------cchhHHHHHHH
Confidence 444444332 3333 5555566666542111111222 234466778888888888877662 233333333
Q ss_pred ---HHHHhhccCChHHHHHHHHhCCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCC
Q 048321 490 ---MADLLGRKGKLKEALDFVQSMPIKS-DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPH 548 (641)
Q Consensus 490 ---l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 548 (641)
|.......|.+|+|+..++....+. .+.....-...+...|+.++|+..++++++.+++
T Consensus 129 ~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 129 ALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 3466778888999988887755211 1111222335677888888888888888887654
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.98 E-value=38 Score=36.80 Aligned_cols=48 Identities=13% Similarity=0.133 Sum_probs=26.7
Q ss_pred HHhhccCChHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Q 048321 492 DLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHLNIEIGEYVAY 540 (641)
Q Consensus 492 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 540 (641)
..+.+..+.+++..+.+.... -++..|..++..+...+..+.-.+...
T Consensus 713 ~~~~q~~d~E~~it~~~~~g~-~~p~l~~~~L~yF~~~~~i~~~~~~v~ 760 (933)
T KOG2114|consen 713 LYFQQISDPETVITLCERLGK-EDPSLWLHALKYFVSEESIEDCYEIVY 760 (933)
T ss_pred HHHHHhhChHHHHHHHHHhCc-cChHHHHHHHHHHhhhcchhhHHHHHH
Confidence 334455566666666665542 256677777777666665444433333
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=88.96 E-value=2.3 Score=40.00 Aligned_cols=61 Identities=13% Similarity=0.040 Sum_probs=54.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 519 WGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 519 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
.+.|-.++.+.++++.|.++.+.++.+.|+++.-+--.|-+|.+.|.+..|..-++...+.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 4566678899999999999999999999999988888999999999999999988877664
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.90 E-value=1.7 Score=40.83 Aligned_cols=61 Identities=16% Similarity=0.161 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048321 518 IWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 518 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
++..++..+...|+.+.+...++++++.+|-+-..|..+...|.+.|+...|+..++.+..
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 3444555555666666666666666666666666666666666666666666666665544
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=88.77 E-value=8.9 Score=32.84 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=11.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHH
Q 048321 416 TMIAGCALNGEFVEALDLFHQLME 439 (641)
Q Consensus 416 ~li~~~~~~g~~~~A~~~~~~m~~ 439 (641)
+|.-+-.+.|++.+|.+.|..+..
T Consensus 172 ALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 172 ALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHhHHHHhccchHHHHHHHHHHHc
Confidence 333344445555555555555544
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.72 E-value=22 Score=33.61 Aligned_cols=116 Identities=16% Similarity=0.072 Sum_probs=68.8
Q ss_pred HhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCh----hHHHHHHHHHHHcCChHH
Q 048321 354 GCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKIV----VSWTTMIAGCALNGEFVE 429 (641)
Q Consensus 354 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~ 429 (641)
.....|+...+...++...... +-+..+.-.++.+|...|+.+.|..++..++.... .....-|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 3456677778888777777654 33355666788888999999999999988876311 111222333444444444
Q ss_pred HHHHHHHHHHcCCCCCh-hhHHHHHHHHhccCChHHHHHHHHHHH
Q 048321 430 ALDLFHQLMELDLRPNR-VTFLAVLQACTHTGFLEKGWAISIIQY 473 (641)
Q Consensus 430 A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~ 473 (641)
...+-.+.-. .|+. ..-..+...+...|+.+.|.+.+-.+.
T Consensus 222 ~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 222 IQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred HHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444444433 4533 344445556666777777765554444
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=88.70 E-value=1.8 Score=28.93 Aligned_cols=50 Identities=4% Similarity=0.007 Sum_probs=38.7
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCceeEEEECCEEEEEeeCCCCCCChhcHHHHHHHHHHHHHHccc
Q 048321 553 YVEMANKYALGGRWDGVANIRTMMKRNQVKKFPGQSLFHINGKTCTFTAEDRYHAESELTYPVLDCLALHSREEAY 628 (641)
Q Consensus 553 ~~~l~~~~~~~g~~~eA~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~g~ 628 (641)
...++-.+.+.|++++|.+..+.+.+. +|.+.+.-.....+..++.+.|.
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~--------------------------eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEI--------------------------EPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH--------------------------TTS-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhh--------------------------CCCcHHHHHHHHHHHHHHhccCC
Confidence 456778899999999999999988863 67788777777777788888773
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=88.66 E-value=5.8 Score=38.13 Aligned_cols=26 Identities=12% Similarity=0.263 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHcCCCCChhhHHHHH
Q 048321 123 ENVLRLFYNMRLVGIQADFVTVMGLT 148 (641)
Q Consensus 123 ~~a~~l~~~m~~~g~~p~~~t~~~ll 148 (641)
++.+++++.|.+.|+.-+..+|.+..
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~ 104 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAAL 104 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHH
Confidence 34456666677777666666655533
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=88.65 E-value=1 Score=42.59 Aligned_cols=87 Identities=13% Similarity=0.067 Sum_probs=60.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhc
Q 048321 418 IAGCALNGEFVEALDLFHQLMELDLRP-NRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGR 496 (641)
Q Consensus 418 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 496 (641)
.+-|.++|.+++|+..|.+.... .| |.+++..-..+|.+...+..|..-...++.. | ...+.+|+|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL-------d----~~Y~KAYSR 170 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL-------D----KLYVKAYSR 170 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh-------h----HHHHHHHHH
Confidence 35689999999999999998875 67 8899999999999999888877766665531 1 233455555
Q ss_pred cC-------ChHHHHHHHHhCC-CCCChh
Q 048321 497 KG-------KLKEALDFVQSMP-IKSDAG 517 (641)
Q Consensus 497 ~g-------~~~~A~~~~~~~~-~~p~~~ 517 (641)
.| ...||.+=++... ..|+..
T Consensus 171 R~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 171 RMQARESLGNNMEAKKDCETVLALEPKNI 199 (536)
T ss_pred HHHHHHHHhhHHHHHHhHHHHHhhCcccH
Confidence 54 4555554444433 566643
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=88.63 E-value=3.6 Score=31.19 Aligned_cols=63 Identities=21% Similarity=0.201 Sum_probs=48.7
Q ss_pred ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHH
Q 048321 426 EFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMAD 492 (641)
Q Consensus 426 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~ 492 (641)
+.-++.+-++.+....+.|++....+.|.||.+.+++..|.++|+..+.+.| .+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~----~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG----AHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc----CchhhHHHHHH
Confidence 4445666677777778899999999999999999999999999998886655 34456665553
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.43 E-value=1.2 Score=44.46 Aligned_cols=88 Identities=14% Similarity=0.043 Sum_probs=73.2
Q ss_pred HHHhhccCChHHHHHHHHhCC-CCCChhHHHHH-HHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchH
Q 048321 491 ADLLGRKGKLKEALDFVQSMP-IKSDAGIWGTL-LCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDG 568 (641)
Q Consensus 491 ~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l-l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~e 568 (641)
.+-+...+.++.|..++.++. ..||...|.+. ..++.+.+++..|+.-+.++++++|.....|+.-+..+.+.|++.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~ 90 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKK 90 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHH
Confidence 345567788889998888876 77766655443 3778899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 048321 569 VANIRTMMKR 578 (641)
Q Consensus 569 A~~~~~~m~~ 578 (641)
|...++....
T Consensus 91 A~~~l~~~~~ 100 (476)
T KOG0376|consen 91 ALLDLEKVKK 100 (476)
T ss_pred HHHHHHHhhh
Confidence 9999887554
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.21 E-value=0.27 Score=46.53 Aligned_cols=91 Identities=13% Similarity=0.091 Sum_probs=70.8
Q ss_pred ccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHH
Q 048321 496 RKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIR 573 (641)
Q Consensus 496 ~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~ 573 (641)
..|.+++|++.|.... .+|....+..-.+.+.+.+....|++-+..+++++|+....|-.-+......|+|++|...+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 4567888888887765 33445555556677778888888899999999999998888888888888999999999999
Q ss_pred HHHHhCCCccCCc
Q 048321 574 TMMKRNQVKKFPG 586 (641)
Q Consensus 574 ~~m~~~~~~~~~~ 586 (641)
....+.+.....+
T Consensus 206 ~~a~kld~dE~~~ 218 (377)
T KOG1308|consen 206 ALACKLDYDEANS 218 (377)
T ss_pred HHHHhccccHHHH
Confidence 8888776654433
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=88.14 E-value=3 Score=32.01 Aligned_cols=60 Identities=22% Similarity=0.213 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHH
Q 048321 429 EALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMAD 492 (641)
Q Consensus 429 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~ 492 (641)
+..+-++.+....+.|++....+.|.||.+.+++..|.++|+.++.+.+ +....|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~----~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG----NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT----T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc----ChHHHHHHHHH
Confidence 4555666666677889999999999999999999999999999887766 44446666654
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.84 E-value=24 Score=33.13 Aligned_cols=61 Identities=11% Similarity=-0.048 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048321 518 IWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 518 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
.++.....|...|.+.+|.++.++++.++|-+...+..+.++|+..|+--+|.+-++.+.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 3444557789999999999999999999999999999999999999998888888877754
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=87.82 E-value=17 Score=31.34 Aligned_cols=56 Identities=14% Similarity=0.074 Sum_probs=31.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHH
Q 048321 282 INTLISMYSKCGDIDSARVLFDGICDRTRVSWTAMISGYAQKGDLDEALRLFFAME 337 (641)
Q Consensus 282 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 337 (641)
+..+++.+...|++-+|.++.+....-+...-..++.+-.+.++...-..+|+-..
T Consensus 92 ~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 92 YEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34455566667777777777766544444444555555555555544444444433
|
|
| >KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.36 E-value=32 Score=34.00 Aligned_cols=163 Identities=15% Similarity=0.193 Sum_probs=89.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCC------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 048321 381 MVCNALIDMYSKCGSIGDARELFYALPE------KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQ 454 (641)
Q Consensus 381 ~~~~~li~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 454 (641)
..+.-+.+-|..||+++.|.+.+.+... .-+..|-.+|..-.-.|+|........+..+. |+.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st---~~~-------- 219 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST---PDA-------- 219 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC---chh--------
Confidence 4566688889999999999999998654 12345656666666677887777777766652 311
Q ss_pred HHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC---------CCCChhHHHHHHHH
Q 048321 455 ACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP---------IKSDAGIWGTLLCA 525 (641)
Q Consensus 455 ~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~~~~~~~ll~~ 525 (641)
++..... +.+....+..+..+..+ ++..|...|-... +.|..++....+.+
T Consensus 220 --------------~~~~~q~----v~~kl~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcA 279 (466)
T KOG0686|consen 220 --------------NENLAQE----VPAKLKCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCA 279 (466)
T ss_pred --------------hhhHHHh----cCcchHHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHHhhHh
Confidence 1111111 33555566666655554 5666665554433 22322222233333
Q ss_pred HHHcCCHHHH-----HHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 526 CKIHLNIEIG-----EYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 526 ~~~~g~~~~a-----~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
..--+.-+.- -..|+..++++|. ....+..-| .++|....+++++++.+
T Consensus 280 LAtfdr~~Lk~~vi~n~~Fk~flel~Pq---lr~il~~fy--~sky~~cl~~L~~~k~~ 333 (466)
T KOG0686|consen 280 LATFDRQDLKLNVIKNESFKLFLELEPQ---LREILFKFY--SSKYASCLELLREIKPR 333 (466)
T ss_pred hccCCHHHHHHHHHcchhhhhHHhcChH---HHHHHHHHh--hhhHHHHHHHHHHhccc
Confidence 3333322222 2346667777775 222233222 35677777777766643
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=87.26 E-value=0.95 Score=30.22 Aligned_cols=31 Identities=16% Similarity=0.089 Sum_probs=25.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhHccCCCCCc
Q 048321 521 TLLCACKIHLNIEIGEYVAYCLFKLEPHSAA 551 (641)
Q Consensus 521 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 551 (641)
.+.-++.+.|+++.|.+..+.+++++|+|..
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence 4566789999999999999999999999643
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.95 E-value=7.4 Score=34.15 Aligned_cols=61 Identities=10% Similarity=-0.055 Sum_probs=34.4
Q ss_pred HHhhccCChHHHHHHHHhCC-CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCcc
Q 048321 492 DLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAP 552 (641)
Q Consensus 492 ~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 552 (641)
.++.+.+.++.|++-..+.. ..| ....+..-..+|.+...++.|+.-++++++.+|....+
T Consensus 142 aa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ea 204 (271)
T KOG4234|consen 142 AALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREA 204 (271)
T ss_pred HHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHH
Confidence 34445555555554444433 222 11122222345667778888888889999888875433
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=86.81 E-value=30 Score=33.10 Aligned_cols=131 Identities=10% Similarity=-0.074 Sum_probs=67.6
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcC-chHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 048321 315 AMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSG-ALELGKWFDNYACSGGLKDNVMVCNALIDMYSKC 393 (641)
Q Consensus 315 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 393 (641)
..+.++.+.++ .+++..+-.+.. .+|...-...+.++.+.+ ....+...+..+.. .++..+-...+.++.+.
T Consensus 147 ~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 147 AVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALR 219 (280)
T ss_pred HHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHcc
Confidence 33444444443 344444444443 233333333333444332 12233333333332 44566666677777777
Q ss_pred CCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHh
Q 048321 394 GSIGDARELFYALPEKIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACT 457 (641)
Q Consensus 394 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 457 (641)
|+..-...+.+.+..++ ..-..+.++...|.. +|+..+.++... .||...-...+.+|.
T Consensus 220 ~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 220 KDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred CChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 77443333334443333 234567778888874 688888888765 457666666565554
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=86.78 E-value=19 Score=30.90 Aligned_cols=121 Identities=14% Similarity=0.043 Sum_probs=69.9
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCChh-hHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChh-HHHHH--HHHhhc
Q 048321 421 CALNGEFVEALDLFHQLMELDLRPNRV-TFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELD-HYSCM--ADLLGR 496 (641)
Q Consensus 421 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~-~~~~l--~~~~~~ 496 (641)
+++.+..++|+.-|..+...|...-++ .-..........|+...|...|+++-.... .|.+. -..-| ..++..
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~---~P~~~rd~ARlraa~lLvD 144 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTS---IPQIGRDLARLRAAYLLVD 144 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCC---CcchhhHHHHHHHHHHHhc
Confidence 455667777777777777665432221 112223345667777777777777764332 22211 11111 234567
Q ss_pred cCChHHHHHHHHhCCCCCC---hhHHHHHHHHHHHcCCHHHHHHHHHHhHc
Q 048321 497 KGKLKEALDFVQSMPIKSD---AGIWGTLLCACKIHLNIEIGEYVAYCLFK 544 (641)
Q Consensus 497 ~g~~~~A~~~~~~~~~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 544 (641)
.|.+++.....+-+..+.+ ...-.+|.-+-.+.|++..|...|+++..
T Consensus 145 ~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 145 NGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 7777777777666552222 23445566666778888888888887766
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=86.64 E-value=1 Score=28.07 Aligned_cols=28 Identities=18% Similarity=0.322 Sum_probs=22.9
Q ss_pred ccHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048321 551 APYVEMANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 551 ~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
.++..++.+|...|++++|.+++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3567899999999999999999988765
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.53 E-value=5.7 Score=37.45 Aligned_cols=102 Identities=13% Similarity=0.111 Sum_probs=70.1
Q ss_pred cCCCChhHHHHHHHHhHcCCChhHHHHHHhcccCC-----CCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCCCCChh
Q 048321 171 GVDADVSVCNTWISSYAKCDDLKMAELVFCGIEER-----LRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVT 245 (641)
Q Consensus 171 ~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 245 (641)
|.+....+...++..-....+++.+...+-++... .++. +-.++++-+. .=++++++.++..=++-|+-||.+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 44445555666666666667777777776666543 1221 1122233332 235678888888888889999999
Q ss_pred hHHHHHHHhcCCCchHHHHHHHHHHHHhC
Q 048321 246 TVVSLLSSFVCPEALVQGRLVHSHGIHYG 274 (641)
Q Consensus 246 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 274 (641)
+++.+|..+.+.+++..|.++.-.|+...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 99999999999999999988887777655
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=86.48 E-value=2.8 Score=36.13 Aligned_cols=31 Identities=13% Similarity=0.021 Sum_probs=16.3
Q ss_pred HHHHHHHHhHccCCCCCccHHHHHHHHHhcC
Q 048321 534 IGEYVAYCLFKLEPHSAAPYVEMANKYALGG 564 (641)
Q Consensus 534 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 564 (641)
+|+.-+++++.++|+...++.++|++|...|
T Consensus 53 dAisK~eeAL~I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 53 DAISKFEEALKINPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 3444455555666665566666666655544
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.40 E-value=13 Score=38.58 Aligned_cols=149 Identities=16% Similarity=0.095 Sum_probs=101.2
Q ss_pred HhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh-hHHHHHHHHhccCChHHHHHHH
Q 048321 391 SKCGSIGDARELFYALPEKIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRV-TFLAVLQACTHTGFLEKGWAIS 469 (641)
Q Consensus 391 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~ 469 (641)
.-.|+++.|..++..++++ .-+.++..+.++|-.++|+++ .||.. -|... .+.|+++.|.++.
T Consensus 597 vmrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~---------s~D~d~rFela----l~lgrl~iA~~la 660 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALEL---------STDPDQRFELA----LKLGRLDIAFDLA 660 (794)
T ss_pred hhhccccccccccccCchh---hhhhHHhHhhhccchHhhhhc---------CCChhhhhhhh----hhcCcHHHHHHHH
Confidence 3467888888777777643 345566667777777777654 33332 33332 3568888887775
Q ss_pred HHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCC
Q 048321 470 IIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHS 549 (641)
Q Consensus 470 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 549 (641)
.+. .+..-|..|.++....|++..|.+.|.... -|..|+-.+...|+.+.-..+....-+....|
T Consensus 661 ~e~---------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N 725 (794)
T KOG0276|consen 661 VEA---------NSEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNN 725 (794)
T ss_pred Hhh---------cchHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccc
Confidence 433 345679999999999999999999998765 46777777777888776555555554444333
Q ss_pred CccHHHHHHHHHhcCCchHHHHHHHH
Q 048321 550 AAPYVEMANKYALGGRWDGVANIRTM 575 (641)
Q Consensus 550 ~~~~~~l~~~~~~~g~~~eA~~~~~~ 575 (641)
.--.+|...|+++++.+++..
T Consensus 726 -----~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 726 -----LAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred -----hHHHHHHHcCCHHHHHHHHHh
Confidence 334567888999998888754
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=86.37 E-value=1.1 Score=26.38 Aligned_cols=28 Identities=11% Similarity=0.192 Sum_probs=25.0
Q ss_pred ccHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048321 551 APYVEMANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 551 ~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
..|..++.+|...|++++|.+.+++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4688999999999999999999988765
|
... |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=86.21 E-value=2.2 Score=25.10 Aligned_cols=28 Identities=21% Similarity=0.443 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 048321 413 SWTTMIAGCALNGEFVEALDLFHQLMEL 440 (641)
Q Consensus 413 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 440 (641)
+|..+...|...|++++|+..|++.++.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 5666777777777777777777777764
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=85.74 E-value=1.2 Score=26.51 Aligned_cols=21 Identities=29% Similarity=0.532 Sum_probs=12.0
Q ss_pred hhHHHHHHHHhhccCChHHHH
Q 048321 484 LDHYSCMADLLGRKGKLKEAL 504 (641)
Q Consensus 484 ~~~~~~l~~~~~~~g~~~~A~ 504 (641)
...|..+..+|...|++++|+
T Consensus 13 ~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhhc
Confidence 555555555555555555553
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=85.50 E-value=1.4 Score=25.65 Aligned_cols=26 Identities=12% Similarity=-0.168 Sum_probs=12.6
Q ss_pred HHHHHHcCCHHHHHHHHHHhHccCCC
Q 048321 523 LCACKIHLNIEIGEYVAYCLFKLEPH 548 (641)
Q Consensus 523 l~~~~~~g~~~~a~~~~~~~~~~~p~ 548 (641)
..++...|+.++|.+.++++++..|+
T Consensus 7 a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 7 ARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 33444445555555555555554443
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=85.47 E-value=1.9 Score=24.31 Aligned_cols=29 Identities=14% Similarity=-0.123 Sum_probs=15.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhHccCC
Q 048321 519 WGTLLCACKIHLNIEIGEYVAYCLFKLEP 547 (641)
Q Consensus 519 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 547 (641)
|..+...+...|+++.|...+++++++.|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 34444445555555555555555555544
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=85.30 E-value=0.86 Score=26.55 Aligned_cols=28 Identities=14% Similarity=0.169 Sum_probs=24.8
Q ss_pred cHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 552 PYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 552 ~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
++..++.+|.+.|++++|.+.++++.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4678899999999999999999998764
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=85.21 E-value=2.3 Score=38.36 Aligned_cols=79 Identities=10% Similarity=0.032 Sum_probs=40.9
Q ss_pred CChHHHHHHHHhCC-CCCChh-HHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHH
Q 048321 498 GKLKEALDFVQSMP-IKSDAG-IWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTM 575 (641)
Q Consensus 498 g~~~~A~~~~~~~~-~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~ 575 (641)
.+++.|+..+.+.. ..|.+. -|..-+-.+.+..+++.+..--++++++.|+.......++..+.....+++|+..+.+
T Consensus 24 k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqr 103 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQR 103 (284)
T ss_pred hhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 34444444444333 444442 3333333444455555555555566666665555555566666666666666555555
Q ss_pred H
Q 048321 576 M 576 (641)
Q Consensus 576 m 576 (641)
.
T Consensus 104 a 104 (284)
T KOG4642|consen 104 A 104 (284)
T ss_pred H
Confidence 4
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=85.08 E-value=7.7 Score=38.76 Aligned_cols=132 Identities=12% Similarity=0.161 Sum_probs=81.1
Q ss_pred HHHHHhcCCHHHHH-HHHhhCCC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCC
Q 048321 387 IDMYSKCGSIGDAR-ELFYALPE----KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGF 461 (641)
Q Consensus 387 i~~~~~~g~~~~A~-~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 461 (641)
|.--...|++-.|. ++|..+.. |+.+...+.| +...|+++.+.+.+...... +.....+..+++...-+.|+
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r 372 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLAR 372 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhh
Confidence 33344567766554 34443332 4444444333 45678999999888776653 34556688888888888999
Q ss_pred hHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHH
Q 048321 462 LEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCA 525 (641)
Q Consensus 462 ~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~ 525 (641)
+++|...-+-|.... + -+.+....-...--..|-++++.-.+++.. .+|...-|...++.
T Consensus 373 ~~~a~s~a~~~l~~e---i-e~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~~ 434 (831)
T PRK15180 373 WREALSTAEMMLSNE---I-EDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSS 434 (831)
T ss_pred HHHHHHHHHHHhccc---c-CChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeecc
Confidence 999988877776322 2 222222222222334577888888888865 55666667666655
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=84.45 E-value=26 Score=30.25 Aligned_cols=23 Identities=9% Similarity=0.238 Sum_probs=11.6
Q ss_pred HHHHHHHHhcCCCchHHHHHHHH
Q 048321 212 WNSMVAGCTYGDKFDDSLNFYRH 234 (641)
Q Consensus 212 ~~~li~~~~~~g~~~~A~~~~~~ 234 (641)
+..++..+...|++-+|+++.+.
T Consensus 92 ~~~iievLL~~g~vl~ALr~ar~ 114 (167)
T PF07035_consen 92 YEEIIEVLLSKGQVLEALRYARQ 114 (167)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHH
Confidence 34444455555555555555544
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=84.27 E-value=84 Score=36.04 Aligned_cols=182 Identities=11% Similarity=-0.062 Sum_probs=81.0
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHh
Q 048321 378 DNVMVCNALIDMYSKCGSIGDARELFYALPEKIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACT 457 (641)
Q Consensus 378 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 457 (641)
+|..+-...++.+...+.- ....+...+..+|...-...+.++.+.+..+. +..+.. .++...=.....++.
T Consensus 696 ~d~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~ 767 (897)
T PRK13800 696 PDPVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGLA 767 (897)
T ss_pred CCHHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHHH
Confidence 4445555555555443211 12233444455555555555555555443321 112221 344444444444555
Q ss_pred ccCChHH-HHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHH
Q 048321 458 HTGFLEK-GWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHLNIEIGE 536 (641)
Q Consensus 458 ~~g~~~~-a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 536 (641)
..+..+. +...+..+. -.++...-...+..+++.|..+.+...+..+...+|..+-...+.++...+. +++.
T Consensus 768 ~~~~~~~~~~~~L~~ll------~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~ 840 (897)
T PRK13800 768 TLGAGGAPAGDAVRALT------GDPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAV 840 (897)
T ss_pred HhccccchhHHHHHHHh------cCCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchH
Confidence 5443322 223333333 1355556666666666666655444444444444555555555555555554 3344
Q ss_pred HHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHH
Q 048321 537 YVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMM 576 (641)
Q Consensus 537 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m 576 (641)
..+..+++ +|+ ...-...+..+.+.+.-.++...+...
T Consensus 841 ~~L~~~L~-D~~-~~VR~~A~~aL~~~~~~~~a~~~L~~a 878 (897)
T PRK13800 841 PALVEALT-DPH-LDVRKAAVLALTRWPGDPAARDALTTA 878 (897)
T ss_pred HHHHHHhc-CCC-HHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 44444443 222 333333444444432223444444333
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=83.82 E-value=5.5 Score=35.20 Aligned_cols=75 Identities=13% Similarity=0.064 Sum_probs=54.6
Q ss_pred hccCChHHHHHHHHhCCCCC--ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCC----CCccHHHHHHHHHhcCCchH
Q 048321 495 GRKGKLKEALDFVQSMPIKS--DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPH----SAAPYVEMANKYALGGRWDG 568 (641)
Q Consensus 495 ~~~g~~~~A~~~~~~~~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~e 568 (641)
.+.|+ ++|...|-.+...| +....-..+..|....|.+.++.++.+++++.+. |++.+..|+.+|.+.|+++.
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 34454 67777777776333 3444455556666688999999999999887532 57889999999999999988
Q ss_pred HH
Q 048321 569 VA 570 (641)
Q Consensus 569 A~ 570 (641)
|.
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 75
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=83.69 E-value=18 Score=27.81 Aligned_cols=88 Identities=15% Similarity=0.054 Sum_probs=58.9
Q ss_pred chHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 048321 360 ALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKIVVSWTTMIAGCALNGEFVEALDLFHQLME 439 (641)
Q Consensus 360 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 439 (641)
..++|..|-+.+...+- ....+--.-+..+...|++++|..+.+.+.-||+..|-++... +.|..+.+..-+.+|..
T Consensus 20 cHqEA~tIAdwL~~~~~-~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 20 CHQEANTIADWLHLKGE-SEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHh
Confidence 34566666555554431 1222322334556788999999999999988999999887653 56777777777777877
Q ss_pred cCCCCChhhHHH
Q 048321 440 LDLRPNRVTFLA 451 (641)
Q Consensus 440 ~g~~p~~~t~~~ 451 (641)
.| .|...+|..
T Consensus 97 sg-~p~lq~Faa 107 (115)
T TIGR02508 97 SG-DPRLQTFVA 107 (115)
T ss_pred CC-CHHHHHHHH
Confidence 76 565555544
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=83.29 E-value=26 Score=29.38 Aligned_cols=66 Identities=18% Similarity=0.084 Sum_probs=34.0
Q ss_pred cCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCCCCC-ChhHHHHHHHHHHH
Q 048321 459 TGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMPIKS-DAGIWGTLLCACKI 528 (641)
Q Consensus 459 ~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~~ 528 (641)
.++.+++..+++.+.--.+ -.|...++. +-.+.+.|++++|+.+|++....+ ....-..|+..|..
T Consensus 23 ~~d~~D~e~lLdALrvLrP--~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~ 89 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRP--NLKELDMFD--GWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLN 89 (153)
T ss_pred cCCHHHHHHHHHHHHHhCC--CccccchhH--HHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHH
Confidence 5666666666666654222 222222332 334556777777777777766322 33333444444433
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=82.01 E-value=4.6 Score=38.37 Aligned_cols=90 Identities=14% Similarity=0.046 Sum_probs=72.5
Q ss_pred HHHHHHHhhccCChHHHHHHHHhCC----CCC--ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHH
Q 048321 487 YSCMADLLGRKGKLKEALDFVQSMP----IKS--DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKY 560 (641)
Q Consensus 487 ~~~l~~~~~~~g~~~~A~~~~~~~~----~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 560 (641)
|--=++-|.+..++..|...|.+-. -.| +.+.|+.-..+-...||+..++.-..+++.++|.+..+|..-+.++
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~ 163 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCL 163 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHH
Confidence 3333467788889999999988754 223 3456666666667889999999999999999999999999999999
Q ss_pred HhcCCchHHHHHHHHH
Q 048321 561 ALGGRWDGVANIRTMM 576 (641)
Q Consensus 561 ~~~g~~~eA~~~~~~m 576 (641)
....++++|..+.++.
T Consensus 164 ~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 164 LELERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 9999988888877665
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.95 E-value=15 Score=38.04 Aligned_cols=123 Identities=16% Similarity=0.066 Sum_probs=56.7
Q ss_pred cCCHHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHH
Q 048321 292 CGDIDSARVLFDGICDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYA 371 (641)
Q Consensus 292 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 371 (641)
.|+++.|..++..++++ .-+.++.-+-+.|-.++|+++ .+|+..- .....+.|+++.|.++..+.
T Consensus 599 rrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~iA~~la~e~ 663 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDIAFDLAVEA 663 (794)
T ss_pred hccccccccccccCchh---hhhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHHHHHHHHhh
Confidence 45666666555555422 223344444455555555543 2222110 11223445555555444332
Q ss_pred HHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 048321 372 CSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKIVVSWTTMIAGCALNGEFVEALDLFHQLMEL 440 (641)
Q Consensus 372 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 440 (641)
.+..-|..|.++..+.|++..|.+.|..... |..|+-.+...|+.+....+-....+.
T Consensus 664 ------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d-----~~~LlLl~t~~g~~~~l~~la~~~~~~ 721 (794)
T KOG0276|consen 664 ------NSEVKWRQLGDAALSAGELPLASECFLRARD-----LGSLLLLYTSSGNAEGLAVLASLAKKQ 721 (794)
T ss_pred ------cchHHHHHHHHHHhhcccchhHHHHHHhhcc-----hhhhhhhhhhcCChhHHHHHHHHHHhh
Confidence 2334455555555555555555555554432 444444444555544444444444443
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=81.88 E-value=11 Score=33.42 Aligned_cols=75 Identities=16% Similarity=0.057 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHH
Q 048321 428 VEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEA 503 (641)
Q Consensus 428 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 503 (641)
++|.+.|-.+...+.- +.......+..|....+.+++.+++....+..+..-.++++.+..|+..+-+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l-~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPEL-ETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCC-CCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 4555555555554422 22322223333333455556666555555443322244555555555555555555554
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=81.57 E-value=6.9 Score=35.49 Aligned_cols=89 Identities=15% Similarity=-0.021 Sum_probs=67.9
Q ss_pred HHHhhccCChHHHHHHHHhCC---------CCCChhHHHHH--------HH---HHHHcCCHHHHHHHHHHhHccCCCCC
Q 048321 491 ADLLGRKGKLKEALDFVQSMP---------IKSDAGIWGTL--------LC---ACKIHLNIEIGEYVAYCLFKLEPHSA 550 (641)
Q Consensus 491 ~~~~~~~g~~~~A~~~~~~~~---------~~p~~~~~~~l--------l~---~~~~~g~~~~a~~~~~~~~~~~p~~~ 550 (641)
.+-+.+.|++.||..-+.++. .+|-..-|.-| ++ .+...|++-++++.-..++..+|+|.
T Consensus 185 GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nv 264 (329)
T KOG0545|consen 185 GNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNV 264 (329)
T ss_pred hhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchH
Confidence 345667788888777766642 45655555432 22 33467899999999999999999999
Q ss_pred ccHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 551 APYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 551 ~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
.+|+..+.+.+..=+.+||..-+....+.
T Consensus 265 KA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 265 KAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 99999999999998999999988887764
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=81.27 E-value=1.1e+02 Score=35.11 Aligned_cols=173 Identities=16% Similarity=0.090 Sum_probs=91.8
Q ss_pred HHHHHhCCChhHHHHHHHHHHHc-----CCCCCH--HHHHHHHHHhcCcC--chHHHHHHHHHHHHcC--------CCCc
Q 048321 317 ISGYAQKGDLDEALRLFFAMEAA-----GELPDL--VTVLSMISGCGQSG--ALELGKWFDNYACSGG--------LKDN 379 (641)
Q Consensus 317 i~~~~~~g~~~~A~~~~~~m~~~-----~~~p~~--~t~~~ll~~~~~~~--~~~~a~~~~~~~~~~~--------~~~~ 379 (641)
+-+-..+.++.+=+-+++++.+. ..+.|. .-|...+......| -+++++.+. .+.| ..|+
T Consensus 858 ~VAq~SqkDPkEyLP~L~el~~m~~~~rkF~ID~~L~ry~~AL~hLs~~~~~~~~e~~n~I---~kh~Ly~~aL~ly~~~ 934 (1265)
T KOG1920|consen 858 LVAQKSQKDPKEYLPFLNELKKMETLLRKFKIDDYLKRYEDALSHLSECGETYFPECKNYI---KKHGLYDEALALYKPD 934 (1265)
T ss_pred HHHHHhccChHHHHHHHHHHhhchhhhhheeHHHHHHHHHHHHHHHHHcCccccHHHHHHH---HhcccchhhhheeccC
Confidence 33444566777777776666532 122222 12344444444444 334433332 2222 1344
Q ss_pred hhH----HHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh--hHHHHH
Q 048321 380 VMV----CNALIDMYSKCGSIGDARELFYALPEKIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRV--TFLAVL 453 (641)
Q Consensus 380 ~~~----~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll 453 (641)
... |.+..+-+...+.+++|.-.|+..-+ ..--+.+|...|+|.+|+.+..++.. .-|.. +-..|.
T Consensus 935 ~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk-----lekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~ 1006 (1265)
T KOG1920|consen 935 SEKQKVIYEAYADHLREELMSDEAALMYERCGK-----LEKALKAYKECGDWREALSLAAQLSE---GKDELVILAEELV 1006 (1265)
T ss_pred HHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc-----HHHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHH
Confidence 433 33344444456666666666665543 12235667777777777777766643 12222 224566
Q ss_pred HHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC
Q 048321 454 QACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP 511 (641)
Q Consensus 454 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 511 (641)
.-+...++.-+|-++...... .| .--+..|+++..+++|+.+.....
T Consensus 1007 s~L~e~~kh~eAa~il~e~~s------d~-----~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1007 SRLVEQRKHYEAAKILLEYLS------DP-----EEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHcccchhHHHHHHHHhc------CH-----HHHHHHHhhHhHHHHHHHHHHhcc
Confidence 667777777777777655442 12 234566777778888887766544
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.83 E-value=44 Score=30.43 Aligned_cols=53 Identities=0% Similarity=-0.245 Sum_probs=31.4
Q ss_pred HHcCCHHHHHHHHHHhHccCCCCCc-------cHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 527 KIHLNIEIGEYVAYCLFKLEPHSAA-------PYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 527 ~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
...+++.+|+.+++++..-.-+|+- ++..-+-++.-.++.-.+...+++-.+.
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~ 224 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQEL 224 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhc
Confidence 4678899999999988665444432 2222333344445655566666665554
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=80.68 E-value=4.1 Score=25.12 Aligned_cols=28 Identities=21% Similarity=0.444 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 048321 412 VSWTTMIAGCALNGEFVEALDLFHQLME 439 (641)
Q Consensus 412 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 439 (641)
.+++.|...|...|++++|+.++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3556666666677777777776666654
|
|
| >KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.53 E-value=67 Score=32.26 Aligned_cols=26 Identities=15% Similarity=0.312 Sum_probs=18.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHH
Q 048321 109 WNAMLVGFAQMGFLENVLRLFYNMRL 134 (641)
Q Consensus 109 ~~~li~~~~~~g~~~~a~~l~~~m~~ 134 (641)
-|-.+.-|+..|+..+|.+..+++..
T Consensus 217 In~~l~eyv~~getrea~rciR~L~v 242 (645)
T KOG0403|consen 217 INGNLIEYVEIGETREACRCIRELGV 242 (645)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHhCC
Confidence 45566778888888888877777643
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 57.1 bits (136), Expect = 2e-08
Identities = 14/93 (15%), Positives = 33/93 (35%), Gaps = 7/93 (7%)
Query: 274 GFDLDVSVINTLISMYSKCGDIDSARVLFDGICDRTR-------VSWTAMISGYAQKGDL 326
+ + A L + + + A++ G+A++G
Sbjct: 122 QLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAF 181
Query: 327 DEALRLFFAMEAAGELPDLVTVLSMISGCGQSG 359
E + + F ++ AG PDL++ + + G+
Sbjct: 182 KELVYVLFMVKDAGLTPDLLSYAAALQCMGRQD 214
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 50.6 bits (119), Expect = 1e-06
Identities = 13/84 (15%), Positives = 27/84 (32%), Gaps = 7/84 (8%)
Query: 384 NALIDMYSKCGSIGDARELFYALPEKI-------VVSWTTMIAGCALNGEFVEALDLFHQ 436
A + A L + + + ++ G A G F E + +
Sbjct: 131 LAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFM 190
Query: 437 LMELDLRPNRVTFLAVLQACTHTG 460
+ + L P+ +++ A LQ
Sbjct: 191 VKDAGLTPDLLSYAAALQCMGRQD 214
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 47.1 bits (110), Expect = 2e-05
Identities = 14/131 (10%), Positives = 39/131 (29%), Gaps = 9/131 (6%)
Query: 317 ISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSG----ALELGKWFDNYAC 372
+ K LD A +L+ C + A L
Sbjct: 99 LQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQ 158
Query: 373 SGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKIV----VSWTTMIAGCALNGEFV 428
L + + NA++ +++ G+ + + + + + + +S+ + +
Sbjct: 159 KRKLLT-LDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDA 217
Query: 429 EALDLFHQLME 439
++ + M
Sbjct: 218 GTIERCLEQMS 228
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.6 bits (120), Expect = 1e-06
Identities = 72/435 (16%), Positives = 133/435 (30%), Gaps = 138/435 (31%)
Query: 31 NKNEAHKTLL----LFRQMKQNDIEPNNLTFPF---IAKACAKLSDLIYSQMIHGHIVKS 83
N N L L Q+ N ++ + I A+L L+ S+
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK--------- 241
Query: 84 PFVKCDRLDCAYKIFDEMAVRDVASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVT 143
P+ C L + V++ +WNA + ++ R + DF++
Sbjct: 242 PYENC--LL----VLLN--VQNAKAWNAFNLS----------CKILLTTRFKQV-TDFLS 282
Query: 144 VMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISSYAKCDDL-----KMAELV 198
A H+SL + D S+ ++ + DL
Sbjct: 283 -------AATTTHISLDHHSMTL----TPDEVKSLLLKYLDC--RPQDLPREVLTTNPRR 329
Query: 199 FCGIEERLRTVVS-WN--SMVAGCTYGDKFDDSLNF-----YRHMMYNG---FRLDV--- 244
I E +R ++ W+ V + SLN YR M++ F
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK-MFDRLSVFPPSAHIP 388
Query: 245 TTVVSLL---SSFVCPE---------ALVQGR----LVHSHGIHYGFDLDVSVIN----- 283
T ++SL+ +LV+ + + I+ +L V + N
Sbjct: 389 TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY--LELKVKLENEYALH 446
Query: 284 -TLISMYS--KCGDIDSARVLF-DGICDRTRVSWTAMISGY----AQKGDLDEALRLFF- 334
+++ Y+ K D D + D + + I G+ + + R+ F
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQY-------FYSHI-GHHLKNIEHPERMTLFRMVFL 498
Query: 335 --------------AMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNV 380
A A+G + + + L K++ Y C K
Sbjct: 499 DFRFLEQKIRHDSTAWNASGSILNTLQQL---------------KFYKPYICDNDPKYER 543
Query: 381 MVCNALIDMYSKCGS 395
+V NA++D K
Sbjct: 544 LV-NAILDFLPKIEE 557
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 641 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.95 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.94 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.91 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.91 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.87 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.87 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.85 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.84 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.82 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.81 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.81 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.81 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.8 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.8 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.8 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.79 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.78 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.78 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.77 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.76 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.76 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.75 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.75 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.74 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.73 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.71 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.69 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.68 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.67 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.65 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.65 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.62 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.62 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.58 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.56 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.55 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.55 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.54 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.54 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.54 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.53 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.53 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.52 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.52 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.52 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.51 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.51 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.51 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.49 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.49 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.49 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.49 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.48 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.48 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.47 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.45 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.41 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.41 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.41 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.38 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.38 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.37 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.36 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.36 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.35 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.35 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.34 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.33 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.32 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.31 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.31 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.29 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.26 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.25 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.17 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.15 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.14 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.13 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.09 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.08 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.07 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.07 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.07 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.06 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.06 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.05 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.05 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.04 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.04 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.02 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.99 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.98 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.98 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.97 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.97 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.93 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.92 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.92 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.92 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.91 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.91 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.9 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.89 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.88 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.87 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.86 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.84 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.82 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.78 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.78 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.78 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.78 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.77 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.76 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.75 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.74 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.73 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.73 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.73 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.72 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.72 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.72 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.69 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.69 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.67 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.66 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.64 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.62 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.6 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.6 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.59 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.58 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.57 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.57 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.57 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.56 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.56 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.56 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.55 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.55 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.54 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.54 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.54 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.53 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.52 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.52 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.51 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.51 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.5 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.48 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.47 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.47 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.47 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.46 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.44 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.41 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.41 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.4 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.37 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.37 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.36 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.36 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.33 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.33 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.32 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.3 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.28 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.27 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.27 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.27 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.26 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.22 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.22 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.22 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.21 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.21 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.19 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.18 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.18 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.17 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.16 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.14 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.11 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.11 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.09 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.06 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.06 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.04 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.99 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.98 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.96 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.91 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.81 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.76 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.71 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.7 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.67 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.64 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.62 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.61 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.59 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.42 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.41 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.32 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.3 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.3 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.24 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.24 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.12 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.06 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 97.06 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.05 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.0 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.77 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.69 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.49 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.43 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.31 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.19 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.16 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 96.09 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.06 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 96.06 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.77 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.33 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.31 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 95.18 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 95.17 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 94.88 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 94.77 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 94.69 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 93.39 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 92.92 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 91.95 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 91.86 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 90.98 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 90.37 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 90.02 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 89.76 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 88.3 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 87.6 | |
| 2qx5_A | 661 | Nucleoporin NIC96; mRNA transport, nuclear pore co | 87.32 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 87.25 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 86.94 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 86.78 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 86.54 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 86.48 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 86.13 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 85.65 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 85.4 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 85.21 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 85.02 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 84.93 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 84.5 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 84.44 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 83.55 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 83.12 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 82.62 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 80.62 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 80.43 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-43 Score=383.26 Aligned_cols=481 Identities=10% Similarity=-0.044 Sum_probs=404.7
Q ss_pred cCCCChhHHHHHhhccCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHH
Q 048321 86 VKCDRLDCAYKIFDEMAVRDVASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHS 165 (641)
Q Consensus 86 ~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 165 (641)
.+.|.+..+...|+.++.+++..|+.++..|.+.|++++|+.+|++|.. ..||..++..+..+|...|++++|..+++
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 141 (597)
T 2xpi_A 64 STDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLT 141 (597)
T ss_dssp ------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHH
Confidence 4567788888999999989999999999999999999999999999985 57899999999999999999999999999
Q ss_pred HHHHHcCCCChhHHHHHHHHhHcCCChhHHHHHHhcccCC-----------------CCCchhHHHHHHHHhcCCCchHH
Q 048321 166 FGIHIGVDADVSVCNTWISSYAKCDDLKMAELVFCGIEER-----------------LRTVVSWNSMVAGCTYGDKFDDS 228 (641)
Q Consensus 166 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-----------------~~~~~~~~~li~~~~~~g~~~~A 228 (641)
.+.. .+++..+++.++.+|.++|++++|.++|+++... +.+..+|+.++.+|.+.|++++|
T Consensus 142 ~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 219 (597)
T 2xpi_A 142 KEDL--YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRA 219 (597)
T ss_dssp HTCG--GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhc--cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHH
Confidence 8864 3678999999999999999999999999954331 12478999999999999999999
Q ss_pred HHHHHHHHHCCCCCC-hhhHHHHHHHhcCCCchHHHH--HH-HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc
Q 048321 229 LNFYRHMMYNGFRLD-VTTVVSLLSSFVCPEALVQGR--LV-HSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDG 304 (641)
Q Consensus 229 ~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~--~~-~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 304 (641)
+++|++|.+.+ |+ ...+..+...+...+..+.+. .+ +..+...+..+...+|+.++.+|.+.|++++|.++|++
T Consensus 220 ~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 297 (597)
T 2xpi_A 220 KECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSS 297 (597)
T ss_dssp HHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHH
Confidence 99999998864 44 344455555444443332221 11 44455555555667788889999999999999999999
Q ss_pred CCC--CCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhH
Q 048321 305 ICD--RTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMV 382 (641)
Q Consensus 305 ~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 382 (641)
+.. ++..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.++...|+.++|..+++.+.+.. +.+..+
T Consensus 298 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~ 375 (597)
T 2xpi_A 298 INGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVT 375 (597)
T ss_dssp STTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHH
T ss_pred hhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHH
Confidence 976 788999999999999999999999999999865 3366788999999999999999999999999765 667899
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhcc
Q 048321 383 CNALIDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHT 459 (641)
Q Consensus 383 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 459 (641)
++.++.+|.++|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|+++|+++.+.+ +++..++..++.+|.+.
T Consensus 376 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 454 (597)
T 2xpi_A 376 WLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQL 454 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHc
Confidence 99999999999999999999998754 568899999999999999999999999999863 44677999999999999
Q ss_pred CChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-------CCCC--hhHHHHHHHHHHHcC
Q 048321 460 GFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-------IKSD--AGIWGTLLCACKIHL 530 (641)
Q Consensus 460 g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~--~~~~~~ll~~~~~~g 530 (641)
|++++|.++|+.+.+..+ .+..+|+.++.+|.+.|++++|+++|+++. ..|+ ..+|..++.+|...|
T Consensus 455 g~~~~A~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g 530 (597)
T 2xpi_A 455 GNILLANEYLQSSYALFQ----YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLK 530 (597)
T ss_dssp TCHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHhCC----CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhc
Confidence 999999999999996543 568899999999999999999999999984 3676 679999999999999
Q ss_pred CHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 531 NIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 531 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
++++|+..++++++++|+++..|..++.+|.+.|++++|.+.++++.+.
T Consensus 531 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 531 MYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp CHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999998874
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-42 Score=374.12 Aligned_cols=508 Identities=8% Similarity=-0.047 Sum_probs=407.2
Q ss_pred CchhHHhcccCCCChhhhHHHHHHHHHhCCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHhHHHHHHhhc
Q 048321 4 SSLPPRLNRIYRSSTINQWNSQIREAVNKNEAHKTLLLFRQMKQNDIEPNNLTFPFIAKACAKLSDLIYSQMIHGHIVKS 83 (641)
Q Consensus 4 ~~a~~~f~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~i~~~~~~~ 83 (641)
..++..|+.+|.+++. .|+.++..|.+.|++++|+.+|++|.. ..|+..++..+..+|.+
T Consensus 70 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~----------------- 129 (597)
T 2xpi_A 70 LKERNAQNTDSLSRED-YLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCC----------------- 129 (597)
T ss_dssp ------------CHHH-HHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHH-----------------
T ss_pred CCCCCccccchHHHHH-HHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHH-----------------
Confidence 3456778888878888 999999999999999999999999985 55777888888888854
Q ss_pred cCcCCCChhHHHHHhhcc--CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHH
Q 048321 84 PFVKCDRLDCAYKIFDEM--AVRDVASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLK 161 (641)
Q Consensus 84 ~~~~~~~~~~A~~~f~~~--~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 161 (641)
.|++++|..+|+.+ ..++..+|+.++.+|.+.|++++|+++|+++. |+.. ...++...++.
T Consensus 130 ----~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~----~~~~~~~~~~~---- 192 (597)
T 2xpi_A 130 ----TGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETN-----PFRK----DEKNANKLLMQ---- 192 (597)
T ss_dssp ----TTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSC-----TTC--------------CC----
T ss_pred ----cCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccC-----Cccc----ccccccccccc----
Confidence 45666777777766 36788899999999999999999999998532 2220 01111111111
Q ss_pred HHHHHHHHHcCCCChhHHHHHHHHhHcCCChhHHHHHHhcccCC-CCCchhHHHHHHHHhcCCCchHHHHH---HHHHHH
Q 048321 162 SVHSFGIHIGVDADVSVCNTWISSYAKCDDLKMAELVFCGIEER-LRTVVSWNSMVAGCTYGDKFDDSLNF---YRHMMY 237 (641)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~---~~~m~~ 237 (641)
..+.+++..+|+.++.+|.+.|++++|.+.|+++... +.+...|..+...+...+..+.+... +..+..
T Consensus 193 -------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~ 265 (597)
T 2xpi_A 193 -------DGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSK 265 (597)
T ss_dssp -------CSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHG
T ss_pred -------ccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCccccc
Confidence 1234557788889999999999999999999888765 33455566666555444333322211 455555
Q ss_pred CCCCCChhhHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC---CCCCcchHH
Q 048321 238 NGFRLDVTTVVSLLSSFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGI---CDRTRVSWT 314 (641)
Q Consensus 238 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~ 314 (641)
.+..+...+|+.++..|.+.|++++|..+++.+.+. +++..+++.++.+|.+.|++++|.++|+++ .+.+..+|+
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 343 (597)
T 2xpi_A 266 EDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYP 343 (597)
T ss_dssp GGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHH
T ss_pred chHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHH
Confidence 555566677788888999999999999999998876 578999999999999999999999999988 345778999
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 048321 315 AMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCG 394 (641)
Q Consensus 315 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 394 (641)
.++.+|.+.|++++|..+|+++.+.. +.+..++..+...|.+.|++++|..+|+.+.+.. +.+..+++.++.+|.+.|
T Consensus 344 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 421 (597)
T 2xpi_A 344 LHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEG 421 (597)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999998653 4567889999999999999999999999998865 557889999999999999
Q ss_pred CHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHH
Q 048321 395 SIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISII 471 (641)
Q Consensus 395 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 471 (641)
++++|.++|+++.+ .+..+|+.++.+|.+.|++++|+++|+++.+.. +.+..+|..+...|.+.|++++|.++|+.
T Consensus 422 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 500 (597)
T 2xpi_A 422 EHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQN 500 (597)
T ss_dssp CHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 99999999998754 478899999999999999999999999999863 34677999999999999999999999999
Q ss_pred HHhhh---CCCCCCC--hhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHc
Q 048321 472 QYDDK---GISYNPE--LDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFK 544 (641)
Q Consensus 472 ~~~~~---~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 544 (641)
+.+.. + ..|+ ..+|..++.+|.+.|++++|.++|+++. .+.+..+|..+...|...|++++|.+.++++++
T Consensus 501 ~~~~~~~~~--~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 578 (597)
T 2xpi_A 501 ALLLVKKTQ--SNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLA 578 (597)
T ss_dssp HHHHHHHSC--CCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhhhccc--cchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 98543 4 5687 7899999999999999999999999976 444788999999999999999999999999999
Q ss_pred cCCCCCccHHHHHHHHHh
Q 048321 545 LEPHSAAPYVEMANKYAL 562 (641)
Q Consensus 545 ~~p~~~~~~~~l~~~~~~ 562 (641)
++|+++..+..++++|..
T Consensus 579 ~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 579 ISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HCTTCHHHHHHHHHTTC-
T ss_pred cCCCChHHHHHHHHHHhc
Confidence 999999999999998754
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-27 Score=242.06 Aligned_cols=372 Identities=12% Similarity=0.049 Sum_probs=262.5
Q ss_pred HHHhccCChhHHHHHHHHHHHHcCCCChhHHHHHHHHhHcCCChhHHHHHHhcccCC-CCCchhHHHHHHHHhcCCCchH
Q 048321 149 QAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISSYAKCDDLKMAELVFCGIEER-LRTVVSWNSMVAGCTYGDKFDD 227 (641)
Q Consensus 149 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~ 227 (641)
..+.+.|++++|.+.+..+.+.. +.+...+..+...+...|++++|...++..... +.+..+|..+...|.+.|++++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 34455666666666666665543 223344445555566666666666666555443 3445566666666666666666
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC--
Q 048321 228 SLNFYRHMMYNGFRLDVTTVVSLLSSFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGI-- 305 (641)
Q Consensus 228 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-- 305 (641)
|++.|+++.+.. | .+...+..+..+|.+.|++++|.+.|+++
T Consensus 86 A~~~~~~al~~~--p----------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 129 (388)
T 1w3b_A 86 AIEHYRHALRLK--P----------------------------------DFIDGYINLAAALVAAGDMEGAVQAYVSALQ 129 (388)
T ss_dssp HHHHHHHHHHHC--T----------------------------------TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC--c----------------------------------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666666655421 2 23344555555555555555555555544
Q ss_pred -CCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHH
Q 048321 306 -CDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCN 384 (641)
Q Consensus 306 -~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 384 (641)
.+.+...+..+...+...|++++|.+.|+++.+.. +.+..++..+...+...|++++|...++.+.+.+ +.+...+.
T Consensus 130 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~ 207 (388)
T 1w3b_A 130 YNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYI 207 (388)
T ss_dssp HCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHH
Confidence 22233345555666666666666666666666542 2234556666666666677777777776666654 44566777
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHhccC
Q 048321 385 ALIDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPN-RVTFLAVLQACTHTG 460 (641)
Q Consensus 385 ~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g 460 (641)
.+...+...|++++|...|++... .+..+|..+...+...|++++|++.|+++.+. .|+ ..++..+...+.+.|
T Consensus 208 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g 285 (388)
T 1w3b_A 208 NLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKG 285 (388)
T ss_dssp HHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcC
Confidence 778888888888888888876543 35678888999999999999999999999986 454 458888888999999
Q ss_pred ChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCC-ChhHHHHHHHHHHHcCCHHHHHHH
Q 048321 461 FLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHLNIEIGEYV 538 (641)
Q Consensus 461 ~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~ 538 (641)
++++|...|+.+.+..+ .+...+..++.++.+.|++++|...++++. ..| +..++..+...+...|++++|...
T Consensus 286 ~~~~A~~~~~~al~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 361 (388)
T 1w3b_A 286 SVAEAEDCYNTALRLCP----THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH 361 (388)
T ss_dssp CHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred CHHHHHHHHHHHHhhCc----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999986543 678889999999999999999999999976 434 577899999999999999999999
Q ss_pred HHHhHccCCCCCccHHHHHHHHHhcCC
Q 048321 539 AYCLFKLEPHSAAPYVEMANKYALGGR 565 (641)
Q Consensus 539 ~~~~~~~~p~~~~~~~~l~~~~~~~g~ 565 (641)
++++++++|+++..|..++.+|...|+
T Consensus 362 ~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 362 YKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 999999999999999999999988774
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=8.2e-27 Score=236.74 Aligned_cols=352 Identities=15% Similarity=0.087 Sum_probs=298.2
Q ss_pred HHHHhcCCCchHHHHHHHHHHHCCCCCCh-hhHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 048321 216 VAGCTYGDKFDDSLNFYRHMMYNGFRLDV-TTVVSLLSSFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGD 294 (641)
Q Consensus 216 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 294 (641)
...+.+.|++++|.+.+.++.+.. |+. ..+..+...+...|++++|...+...++.. +.+..++..+...|.+.|+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 345566677777777777766542 433 344445555666777777777777777654 6678899999999999999
Q ss_pred HHHHHHHHhcC---CCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHhcCcCchHHHHHHHHH
Q 048321 295 IDSARVLFDGI---CDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDL-VTVLSMISGCGQSGALELGKWFDNY 370 (641)
Q Consensus 295 ~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~ 370 (641)
+++|...|+++ .+.+..+|..+..++.+.|++++|...|+++.+. .|+. ..+..+...+...|++++|...+..
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 99999999987 3445668999999999999999999999999886 3543 4566677788899999999999999
Q ss_pred HHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-h
Q 048321 371 ACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPN-R 446 (641)
Q Consensus 371 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~ 446 (641)
+.+.. +.+..++..+...|.+.|++++|...|+++.+ .+...|..+...+...|++++|+..|++.... .|+ .
T Consensus 161 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~ 237 (388)
T 1w3b_A 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHA 237 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCH
Confidence 99875 55678999999999999999999999998865 35678999999999999999999999999986 565 5
Q ss_pred hhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHH
Q 048321 447 VTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLC 524 (641)
Q Consensus 447 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~ 524 (641)
.++..+...+...|++++|...|+.+.+..+ .+...|..++.+|.+.|++++|++.++++. .+++..+|..+..
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 313 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQP----HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLAN 313 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS----SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHH
Confidence 6888899999999999999999999996332 347789999999999999999999999986 5567889999999
Q ss_pred HHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 525 ACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 525 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
.+...|++++|+..+++++++.|+++..+..++.+|.+.|++++|.+.++++.+.
T Consensus 314 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 314 IKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999998863
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-28 Score=252.16 Aligned_cols=186 Identities=15% Similarity=0.015 Sum_probs=176.5
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCC---------hhHHHHHHHHHHHHcCCCChh
Q 048321 107 ASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKH---------LSLLKSVHSFGIHIGVDADVS 177 (641)
Q Consensus 107 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~ 177 (641)
..++.+|.+|++.|++++|+++|++|.+.|+.||..||+++|.+|+..+. ++.|.++|+.|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 46899999999999999999999999999999999999999999987664 578999999999999999999
Q ss_pred HHHHHHHHhHcCCChhHHHHHHhcccCC--CCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhc
Q 048321 178 VCNTWISSYAKCDDLKMAELVFCGIEER--LRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVVSLLSSFV 255 (641)
Q Consensus 178 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 255 (641)
+||+||++|++.|++++|.++|++|... .||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 9999999999999999999999999876 78999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 048321 256 CPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKC 292 (641)
Q Consensus 256 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 292 (641)
+.|++++|.+++++|.+.|..|+..+|+.++..|+..
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999988764
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-27 Score=246.98 Aligned_cols=184 Identities=13% Similarity=0.073 Sum_probs=150.9
Q ss_pred hhHHHHHHHHhcCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCc---------hHHHHHHHHHHHHhCCCCchh
Q 048321 210 VSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVVSLLSSFVCPEA---------LVQGRLVHSHGIHYGFDLDVS 280 (641)
Q Consensus 210 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~---------~~~a~~~~~~~~~~g~~~~~~ 280 (641)
..++.+|.+|++.|++++|+++|++|.+.|++||..||++||.+|++.+. ++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 34677778888888888888888888888888888888888888776543 577888888888888888888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcC----CCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhc
Q 048321 281 VINTLISMYSKCGDIDSARVLFDGI----CDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCG 356 (641)
Q Consensus 281 ~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~ 356 (641)
+||+||.+|++.|++++|.++|++| ..||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+.+|.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 8888888888888888888888877 456888888888888888888888888888888888888888888888888
Q ss_pred CcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 048321 357 QSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKC 393 (641)
Q Consensus 357 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 393 (641)
+.|+.++|.+++++|.+.|..|+..+|+.++..|+..
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 8888888888888888888888888888888887753
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.5e-24 Score=227.20 Aligned_cols=437 Identities=10% Similarity=-0.090 Sum_probs=216.6
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHHcCCCChhHHHHHHHHh
Q 048321 107 ASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISSY 186 (641)
Q Consensus 107 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 186 (641)
..|......+.+.|++++|+..|+++.+.. ||..++..+..++...|++++|...++.+++.. +.+...+..+..+|
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence 456677788899999999999999998864 788889999999999999999999999998875 33567888888999
Q ss_pred HcCCChhHHHHHHhcccCC-CCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCchHHHHH
Q 048321 187 AKCDDLKMAELVFCGIEER-LRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVVSLLSSFVCPEALVQGRL 265 (641)
Q Consensus 187 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 265 (641)
.+.|++++|...|+++... +++......++..+........+.+.+..+...+..|+...+..-...............
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 9999999999999888765 344555555555544433333333333333222222222211111100000011111111
Q ss_pred HHHHHHHhCC---------CCchhHHHHHHHHHHh---cCCHHHHHHHHhcCCC-----------------CCcchHHHH
Q 048321 266 VHSHGIHYGF---------DLDVSVINTLISMYSK---CGDIDSARVLFDGICD-----------------RTRVSWTAM 316 (641)
Q Consensus 266 ~~~~~~~~g~---------~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~-----------------~~~~~~~~l 316 (641)
+...+..... +.+...+..+...+.. .|++++|...|+++.. .+..+|..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 1000000000 1112222223332222 4555555555443321 012234444
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 048321 317 ISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSI 396 (641)
Q Consensus 317 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 396 (641)
...+...|++++|...|+++.+.. |+...+..+...+...|++++|...++.+.+.. +.+..++..+...|...|++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCH
Confidence 555555555555555555554432 224444444445555555555555555554432 22344444455555555555
Q ss_pred HHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHH
Q 048321 397 GDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQY 473 (641)
Q Consensus 397 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 473 (641)
++|...|+.+.+ .+..+|..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++.+.
T Consensus 321 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 399 (514)
T 2gw1_A 321 DQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAI 399 (514)
T ss_dssp THHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 555555544321 233444444555555555555555555554431 1122344444445555555555555555544
Q ss_pred hhhCCCCCCC----hhHHHHHHHHhhc---cCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHc
Q 048321 474 DDKGISYNPE----LDHYSCMADLLGR---KGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFK 544 (641)
Q Consensus 474 ~~~~~~~~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 544 (641)
+..+ -.++ ...+..++..+.+ .|++++|...++++. .+.+..+|..+...+...|++++|...++++++
T Consensus 400 ~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 400 ELEN--KLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHH--TSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred Hhhh--ccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3222 1111 2244444555555 555555555554433 222333444444555555555555555555555
Q ss_pred cCCCCCcc
Q 048321 545 LEPHSAAP 552 (641)
Q Consensus 545 ~~p~~~~~ 552 (641)
++|+++..
T Consensus 478 ~~~~~~~~ 485 (514)
T 2gw1_A 478 LARTMEEK 485 (514)
T ss_dssp HCSSHHHH
T ss_pred hccccHHH
Confidence 55544333
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=7.6e-24 Score=223.46 Aligned_cols=428 Identities=9% Similarity=-0.079 Sum_probs=322.2
Q ss_pred hhHHHHHHHHhccCChhHHHHHHHHHHHHcCCCChhHHHHHHHHhHcCCChhHHHHHHhcccCC-CCCchhHHHHHHHHh
Q 048321 142 VTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISSYAKCDDLKMAELVFCGIEER-LRTVVSWNSMVAGCT 220 (641)
Q Consensus 142 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~ 220 (641)
..+......+...|++++|...+..+++.. |+..++..+..+|.+.|++++|...|+++.+. +.+...|..+..+|.
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence 346667778889999999999999999976 78999999999999999999999999988776 556788999999999
Q ss_pred cCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchhHHHHH---HHHHHhcCCHHH
Q 048321 221 YGDKFDDSLNFYRHMMYNGFRLDVTTVVSLLSSFVCPEALVQGRLVHSHGIHYGFDLDVSVINTL---ISMYSKCGDIDS 297 (641)
Q Consensus 221 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l---i~~~~~~g~~~~ 297 (641)
+.|++++|...|+++...+. ++......++..+........+.+.+..+...+..|+....... ............
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 99999999999999988763 44455444444443322222222222222111111111100000 000111111112
Q ss_pred HHHHHhcCC---------CC-CcchHHHHHHHHHh---CCChhHHHHHHHHHHH-----cCCCC--------CHHHHHHH
Q 048321 298 ARVLFDGIC---------DR-TRVSWTAMISGYAQ---KGDLDEALRLFFAMEA-----AGELP--------DLVTVLSM 351 (641)
Q Consensus 298 A~~~~~~~~---------~~-~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~~~~p--------~~~t~~~l 351 (641)
+...+.... .+ +...+......+.. .|++++|..+|+++.+ ....| +..++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 222222221 11 23344445554554 8999999999999987 31122 24567778
Q ss_pred HHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChH
Q 048321 352 ISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFV 428 (641)
Q Consensus 352 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 428 (641)
...+...|+++.|...++.+.+.... ..++..+...|...|++++|...|+.+.. .+..+|..+...+...|+++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 321 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYD 321 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHH
Confidence 88899999999999999999987633 88899999999999999999999998765 46678999999999999999
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHH
Q 048321 429 EALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQ 508 (641)
Q Consensus 429 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 508 (641)
+|+..|+++.+.. +.+..++..+...+...|++++|...++.+.+..+ .+...+..++..|.+.|++++|...++
T Consensus 322 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 322 QAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFP----EAPEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp HHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST----TCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc----cCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999863 23456888888899999999999999999986543 457789999999999999999999999
Q ss_pred hCC----CCCC----hhHHHHHHHHHHH---cCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHH
Q 048321 509 SMP----IKSD----AGIWGTLLCACKI---HLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMK 577 (641)
Q Consensus 509 ~~~----~~p~----~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~ 577 (641)
++. ..++ ...|..+...+.. .|++++|...+++++++.|+++..+..++.+|...|++++|.+.+++..
T Consensus 397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 476 (514)
T 2gw1_A 397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESA 476 (514)
T ss_dssp HHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 875 2222 3388999999999 9999999999999999999999999999999999999999999999988
Q ss_pred hC
Q 048321 578 RN 579 (641)
Q Consensus 578 ~~ 579 (641)
+.
T Consensus 477 ~~ 478 (514)
T 2gw1_A 477 DL 478 (514)
T ss_dssp HH
T ss_pred Hh
Confidence 64
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.4e-23 Score=215.67 Aligned_cols=339 Identities=9% Similarity=-0.025 Sum_probs=236.5
Q ss_pred CCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchhHHHHHH
Q 048321 207 RTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVVSLLSSFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLI 286 (641)
Q Consensus 207 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 286 (641)
.+...|..+...+.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|...+..+++.+ +.+..++..+.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 345556666666666666666666666665532 1234444555555555555555555555555543 33455556666
Q ss_pred HHHHhcCCHHHHHHHHhcCCCC---Cc---chHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCc
Q 048321 287 SMYSKCGDIDSARVLFDGICDR---TR---VSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGA 360 (641)
Q Consensus 287 ~~~~~~g~~~~A~~~~~~~~~~---~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~ 360 (641)
.+|.+.|++++|...|+++... +. ..|..++..+... .+..+...+...|+
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------------------~~~~~a~~~~~~~~ 158 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ-----------------------RLRSQALNAFGSGD 158 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHTC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHcCC
Confidence 6666666666666666655222 11 3333333331111 11112233455677
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 048321 361 LELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQL 437 (641)
Q Consensus 361 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m 437 (641)
+++|...++.+.+.. +.+..++..+..+|.+.|++++|...|+++.+ .+..+|..+...|...|++++|+..|+++
T Consensus 159 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 237 (450)
T 2y4t_A 159 YTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVREC 237 (450)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777777777776654 45677888888888999999999988888764 46788999999999999999999999999
Q ss_pred HHcCCCCChhh-HHHH------------HHHHhccCChHHHHHHHHHHHhhhCCCCCCC--hhHHHHHHHHhhccCChHH
Q 048321 438 MELDLRPNRVT-FLAV------------LQACTHTGFLEKGWAISIIQYDDKGISYNPE--LDHYSCMADLLGRKGKLKE 502 (641)
Q Consensus 438 ~~~g~~p~~~t-~~~l------------l~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~ 502 (641)
... .|+... +..+ ...|.+.|++++|...|+.+.+..+ -.|. ..+|..++.++.+.|++++
T Consensus 238 ~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~~~~~l~~~~~~~g~~~~ 313 (450)
T 2y4t_A 238 LKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEP--SIAEYTVRSKERICHCFSKDEKPVE 313 (450)
T ss_dssp HHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC--SSHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--cchHHHHHHHHHHHHHHHHCCCHHH
Confidence 875 566553 3333 6789999999999999999996433 1121 4588999999999999999
Q ss_pred HHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHH------------HHHHhcC----
Q 048321 503 ALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMA------------NKYALGG---- 564 (641)
Q Consensus 503 A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~------------~~~~~~g---- 564 (641)
|+..++++. .+.+..+|..+..+|...|++++|...++++++++|+++..+..++ +.|...|
T Consensus 314 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~ 393 (450)
T 2y4t_A 314 AIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRN 393 (450)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTT
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCcc
Confidence 999999976 4446889999999999999999999999999999999999999999 4566666
Q ss_pred -CchHHHHHHHH
Q 048321 565 -RWDGVANIRTM 575 (641)
Q Consensus 565 -~~~eA~~~~~~ 575 (641)
+.+++.+.+++
T Consensus 394 ~~~~~~~~~y~~ 405 (450)
T 2y4t_A 394 AKKQEIIKAYRK 405 (450)
T ss_dssp CCTTHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 44556666554
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.91 E-value=4.3e-22 Score=211.32 Aligned_cols=420 Identities=9% Similarity=-0.015 Sum_probs=218.3
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHHcCCCChhHHHHHHHH
Q 048321 106 VASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISS 185 (641)
Q Consensus 106 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 185 (641)
...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|.+.++.+++.. +.+...+..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 4567888888999999999999999998864 3466778888888899999999999999998875 3367788888889
Q ss_pred hHcCCChhHHHHHHhcccCCCCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCC------CCCChhhHHHHHHHhcCCCc
Q 048321 186 YAKCDDLKMAELVFCGIEERLRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNG------FRLDVTTVVSLLSSFVCPEA 259 (641)
Q Consensus 186 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~t~~~ll~~~~~~~~ 259 (641)
|...|++++|...|+.+.. +....+..+..+...+...+|...++++.... ..|+.......+. ..+
T Consensus 103 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~ 175 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVLSL---NGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFG----IFD 175 (537)
T ss_dssp HHHHTCHHHHHHHHHHHC--------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHH----TSC
T ss_pred HHHcCCHHHHHHHHHHHhc---CCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHH----hcC
Confidence 9999999999999864432 22223333445555556677888888875531 2233222222221 122
Q ss_pred hHHHHHHHHHHHHhCCCCch---hHHHHHHHHHHhc--------CCHHHHHHHHhcCCCCC---c-------chHHHHHH
Q 048321 260 LVQGRLVHSHGIHYGFDLDV---SVINTLISMYSKC--------GDIDSARVLFDGICDRT---R-------VSWTAMIS 318 (641)
Q Consensus 260 ~~~a~~~~~~~~~~g~~~~~---~~~~~li~~~~~~--------g~~~~A~~~~~~~~~~~---~-------~~~~~li~ 318 (641)
.+.+...+.. ....+. .....+...+... |++++|..+|+.+...+ . .+|..+..
T Consensus 176 ~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~ 251 (537)
T 3fp2_A 176 SHLEVSSVNT----SSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGI 251 (537)
T ss_dssp HHHHHHTSCC----CCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhh----ccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHH
Confidence 2221111111 001111 1222222222211 24555555555442211 1 12334444
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHH
Q 048321 319 GYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGD 398 (641)
Q Consensus 319 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 398 (641)
.+...|++++|...|++..+. .|+...+..+...+...|+++.|...+..+.+.. +.+..
T Consensus 252 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~----------------- 311 (537)
T 3fp2_A 252 FHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPP----------------- 311 (537)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHH-----------------
T ss_pred HHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHH-----------------
Confidence 455555555555555555543 2334444444555555555555555555554433 22334
Q ss_pred HHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHhccCChHHHHHHHHHHHhhhC
Q 048321 399 ARELFYALPEKIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPN-RVTFLAVLQACTHTGFLEKGWAISIIQYDDKG 477 (641)
Q Consensus 399 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 477 (641)
+|..+...+...|++++|+..|+++.+. .|+ ..++..+...+...|++++|...++.+.+..+
T Consensus 312 --------------~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 375 (537)
T 3fp2_A 312 --------------TYYHRGQMYFILQDYKNAKEDFQKAQSL--NPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFP 375 (537)
T ss_dssp --------------HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred --------------HHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4444444455555555555555555443 222 23444444455555555555555555543222
Q ss_pred CCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-C---CC----ChhHHHHHHHHHHHc----------CCHHHHHHHH
Q 048321 478 ISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-I---KS----DAGIWGTLLCACKIH----------LNIEIGEYVA 539 (641)
Q Consensus 478 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~---~p----~~~~~~~ll~~~~~~----------g~~~~a~~~~ 539 (641)
.+...+..++..+.+.|++++|...++++. . .+ ....+..+...+... |++++|+..+
T Consensus 376 ----~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~ 451 (537)
T 3fp2_A 376 ----TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLL 451 (537)
T ss_dssp ----TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHH
T ss_pred ----CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHH
Confidence 223444455555555555555555554432 0 00 111122233344444 5555566666
Q ss_pred HHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048321 540 YCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 540 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
+++++.+|+++..+..++.+|...|++++|.+.+++..+
T Consensus 452 ~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 452 TKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 655555555555555556666666666666555555544
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.91 E-value=9.2e-22 Score=203.75 Aligned_cols=296 Identities=12% Similarity=0.007 Sum_probs=226.8
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhcC---CCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 048321 277 LDVSVINTLISMYSKCGDIDSARVLFDGI---CDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMIS 353 (641)
Q Consensus 277 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~ 353 (641)
.+...+..+...|.+.|++++|..+|+.+ .+.+..+|..+...|...|++++|+..|+++.+.+ +.+...+..+..
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 34555666666666666666666666655 23345566666666666666666666666666543 223455666666
Q ss_pred HhcCcCchHHHHHHHHHHHHcCCCCch---hHHHHH------------HHHHHhcCCHHHHHHHHhhCCC---CChhHHH
Q 048321 354 GCGQSGALELGKWFDNYACSGGLKDNV---MVCNAL------------IDMYSKCGSIGDARELFYALPE---KIVVSWT 415 (641)
Q Consensus 354 ~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------i~~~~~~g~~~~A~~~~~~~~~---~~~~~~~ 415 (641)
.+...|++++|...++.+.+.. +.+. ..+..+ ...|.+.|++++|...|+.+.+ .+...+.
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 181 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRE 181 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 6666666666666666666543 2233 344433 4558899999999999998764 4678899
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHH-----
Q 048321 416 TMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCM----- 490 (641)
Q Consensus 416 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l----- 490 (641)
.++..|...|++++|++.|+++.+.. +.+..++..+...|...|++++|...|+.+.+..+ .+...+..+
T Consensus 182 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p----~~~~~~~~~~~~~~ 256 (450)
T 2y4t_A 182 LRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ----DHKRCFAHYKQVKK 256 (450)
T ss_dssp HHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----ChHHHHHHHHHHHH
Confidence 99999999999999999999999863 34567899999999999999999999999986432 334445444
Q ss_pred -------HHHhhccCChHHHHHHHHhCC-CCCC-----hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHH
Q 048321 491 -------ADLLGRKGKLKEALDFVQSMP-IKSD-----AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMA 557 (641)
Q Consensus 491 -------~~~~~~~g~~~~A~~~~~~~~-~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 557 (641)
+..+.+.|++++|+..|+++. ..|+ ...|..+...+...|++++|+..++++++++|+++..|..++
T Consensus 257 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~ 336 (450)
T 2y4t_A 257 LNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRA 336 (450)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 889999999999999999986 4454 346788889999999999999999999999999999999999
Q ss_pred HHHHhcCCchHHHHHHHHHHhC
Q 048321 558 NKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 558 ~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
.+|...|++++|.+.++++.+.
T Consensus 337 ~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 337 EAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHhcCHHHHHHHHHHHHHh
Confidence 9999999999999999998864
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.87 E-value=4.7e-20 Score=195.59 Aligned_cols=421 Identities=12% Similarity=-0.025 Sum_probs=269.3
Q ss_pred CCChhHHHHHhhccC---CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHH
Q 048321 88 CDRLDCAYKIFDEMA---VRDVASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVH 164 (641)
Q Consensus 88 ~~~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 164 (641)
.|++++|...|++.. +.+..+|..+..+|.+.|++++|++.|+++.+.+ +.+..++..+..++...|++++|...+
T Consensus 38 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~ 116 (537)
T 3fp2_A 38 AKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDAMFDL 116 (537)
T ss_dssp TTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 345555555555432 3477889999999999999999999999998864 345677888999999999999999999
Q ss_pred HHHHHHcCCCChhHHHHHHHHhHcCCChhHHHHHHhcccCC----CCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCC
Q 048321 165 SFGIHIGVDADVSVCNTWISSYAKCDDLKMAELVFCGIEER----LRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGF 240 (641)
Q Consensus 165 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 240 (641)
+ .... .|+. ....+..+...+....|...++.+... .+........+..+....+.+.+...+..... .
T Consensus 117 ~-~~~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 189 (537)
T 3fp2_A 117 S-VLSL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSN--Y 189 (537)
T ss_dssp H-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCS--S
T ss_pred H-HHhc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccc--c
Confidence 6 3322 2322 222344555566678888888888664 12233445566667777777766655544322 1
Q ss_pred CCChhhH-HHHHHHhcCC--------CchHHHHHHHHHHHHhCCCCc-------hhHHHHHHHHHHhcCCHHHHHHHHhc
Q 048321 241 RLDVTTV-VSLLSSFVCP--------EALVQGRLVHSHGIHYGFDLD-------VSVINTLISMYSKCGDIDSARVLFDG 304 (641)
Q Consensus 241 ~p~~~t~-~~ll~~~~~~--------~~~~~a~~~~~~~~~~g~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~ 304 (641)
.+....+ ..+...+... +++++|..+++.+.+.. +.+ ..++..+...+...|++++|...|+.
T Consensus 190 ~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~ 268 (537)
T 3fp2_A 190 DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQE 268 (537)
T ss_dssp CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 2222222 2222333222 47888999999988765 222 23577778889999999999999998
Q ss_pred C--CCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhH
Q 048321 305 I--CDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMV 382 (641)
Q Consensus 305 ~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 382 (641)
. ..|+..+|..+...+...|++++|...|++..+.. +.+..++..+...+...|++++|...++.+.+.. +.+..+
T Consensus 269 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~ 346 (537)
T 3fp2_A 269 SINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYP 346 (537)
T ss_dssp HHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHH
T ss_pred HHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 7 33456788899999999999999999999998764 3356677788888888888888888888887754 223344
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHhccCC
Q 048321 383 CNALIDMYSKCGSIGDARELFYALPEKIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPN-RVTFLAVLQACTHTGF 461 (641)
Q Consensus 383 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~ 461 (641)
+.. +...+...|++++|+..|+++.+. .|+ ...+..+...+...|+
T Consensus 347 ~~~-------------------------------la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~ 393 (537)
T 3fp2_A 347 YIQ-------------------------------LACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGD 393 (537)
T ss_dssp HHH-------------------------------HHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTC
T ss_pred HHH-------------------------------HHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCC
Confidence 444 444455555555555555555554 232 3355555555556666
Q ss_pred hHHHHHHHHHHHhhhCCC--CCCChhHHHHHHHHhhcc----------CChHHHHHHHHhCC--CCCChhHHHHHHHHHH
Q 048321 462 LEKGWAISIIQYDDKGIS--YNPELDHYSCMADLLGRK----------GKLKEALDFVQSMP--IKSDAGIWGTLLCACK 527 (641)
Q Consensus 462 ~~~a~~~~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~ 527 (641)
+++|...|+.+.+..+.. .......+..+..++.+. |++++|...|+++. .+.+..+|..+...+.
T Consensus 394 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 473 (537)
T 3fp2_A 394 FDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKL 473 (537)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 666666666555332200 011112233344555555 77777777777755 3335567777778888
Q ss_pred HcCCHHHHHHHHHHhHccCCCCCcc
Q 048321 528 IHLNIEIGEYVAYCLFKLEPHSAAP 552 (641)
Q Consensus 528 ~~g~~~~a~~~~~~~~~~~p~~~~~ 552 (641)
..|++++|...+++++++.|+++..
T Consensus 474 ~~g~~~~A~~~~~~al~~~~~~~~~ 498 (537)
T 3fp2_A 474 QMEKIDEAIELFEDSAILARTMDEK 498 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHC--CHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCcHHH
Confidence 8888888888888888888875443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.7e-19 Score=178.91 Aligned_cols=324 Identities=10% Similarity=0.006 Sum_probs=221.2
Q ss_pred hhHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC---CCCCcchHHHHHHHHH
Q 048321 245 TTVVSLLSSFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGI---CDRTRVSWTAMISGYA 321 (641)
Q Consensus 245 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~ 321 (641)
..+..+...+...|++++|...+..+++.. +.+..++..+..+|...|++++|...|+++ .+.+...|..+...+.
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 345555666666777777777777766654 345566666667777777777777766655 2234456666666666
Q ss_pred hCCChhHHHHHHHHHHHcCCCC---CH-HHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHH
Q 048321 322 QKGDLDEALRLFFAMEAAGELP---DL-VTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIG 397 (641)
Q Consensus 322 ~~g~~~~A~~~~~~m~~~~~~p---~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 397 (641)
..|++++|...|++..+. .| +. ..+..+... .. ...+..+...+...|+++
T Consensus 83 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~-------~~----------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKA-------DE----------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHH-------HH----------------HHHHHHHHHHHHHTTCHH
T ss_pred HcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHH-------HH----------------HHHHHHHHHHHHHccCHH
Confidence 677777777777666553 33 21 111111100 00 011223356777788888
Q ss_pred HHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHh
Q 048321 398 DARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYD 474 (641)
Q Consensus 398 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 474 (641)
+|...|+++.+ .+...|..+...+...|++++|+..++++.+.. +.+..++..+...+...|++++|...|+.+.+
T Consensus 138 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 138 AAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 88888877653 356677778888888888888888888887752 23445777777788888888888888888875
Q ss_pred hhCCCCCCChhHHH------------HHHHHhhccCChHHHHHHHHhCC-CCCC-hh----HHHHHHHHHHHcCCHHHHH
Q 048321 475 DKGISYNPELDHYS------------CMADLLGRKGKLKEALDFVQSMP-IKSD-AG----IWGTLLCACKIHLNIEIGE 536 (641)
Q Consensus 475 ~~~~~~~p~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~----~~~~ll~~~~~~g~~~~a~ 536 (641)
..+ .+...+. .++..+.+.|++++|...++++. ..|+ .. .+..+...+...|++++|.
T Consensus 217 ~~~----~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 217 LDQ----DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp HCT----TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hCc----cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHH
Confidence 333 2223222 23667888999999999998865 3343 32 3445677888999999999
Q ss_pred HHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCceeEEEECCEEEEEeeCCCCCCChhcHHHHH
Q 048321 537 YVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRNQVKKFPGQSLFHINGKTCTFTAEDRYHAESELTYPVL 616 (641)
Q Consensus 537 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l 616 (641)
..++++++.+|+++..+..++.+|...|++++|.+.++++.+. +|....+...+
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--------------------------~p~~~~~~~~l 346 (359)
T 3ieg_A 293 RICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--------------------------NENDQQIREGL 346 (359)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------------------------CTTCHHHHHHH
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------------------------CCCChHHHHHH
Confidence 9999999999999999999999999999999999999988763 45666677777
Q ss_pred HHHHHHHHH
Q 048321 617 DCLALHSRE 625 (641)
Q Consensus 617 ~~l~~~~~~ 625 (641)
.++...+++
T Consensus 347 ~~~~~~~~~ 355 (359)
T 3ieg_A 347 EKAQRLLKQ 355 (359)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 776666554
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.5e-19 Score=176.59 Aligned_cols=326 Identities=9% Similarity=-0.051 Sum_probs=249.3
Q ss_pred CchhHHHHHHHHhcCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 048321 208 TVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVVSLLSSFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLIS 287 (641)
Q Consensus 208 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 287 (641)
|+..|..+...+...|++++|+..|+++.+... .+..++..+...+...|++++|...++.+++.. +.+..++..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 456788889999999999999999999988542 456788888999999999999999999999885 556788999999
Q ss_pred HHHhcCCHHHHHHHHhcCCCCCc------chHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCch
Q 048321 288 MYSKCGDIDSARVLFDGICDRTR------VSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGAL 361 (641)
Q Consensus 288 ~~~~~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~ 361 (641)
+|...|++++|...|+.....++ ..+..+...+. ...+..+...+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 99999999999999998844332 23333321100 01122233445566666
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 048321 362 ELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLM 438 (641)
Q Consensus 362 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 438 (641)
++|..+++.+.+.. +.+..++..+...|...|++++|...|+.+.. .+..+|..+...+...|++++|...|++..
T Consensus 137 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 137 TAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77777776666654 44566777788888888888888888877654 356788888888888899999999999888
Q ss_pred HcCCCCChh-hHH------------HHHHHHhccCChHHHHHHHHHHHhhhCCCCCCCh--hHHHHHHHHhhccCChHHH
Q 048321 439 ELDLRPNRV-TFL------------AVLQACTHTGFLEKGWAISIIQYDDKGISYNPEL--DHYSCMADLLGRKGKLKEA 503 (641)
Q Consensus 439 ~~g~~p~~~-t~~------------~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A 503 (641)
+. .|+.. .+. .+...+...|++++|...++.+.+..+ -.+.. ..+..+..++.+.|++++|
T Consensus 216 ~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~la~~~~~~~~~~~A 291 (359)
T 3ieg_A 216 KL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEP--SVAEYTVRSKERICHCFSKDEKPVEA 291 (359)
T ss_dssp HH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC--SSHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CchHHHHHHHHHHHHHHHHccCHHHH
Confidence 75 45443 222 225568889999999999999986443 11111 3355688999999999999
Q ss_pred HHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhc
Q 048321 504 LDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALG 563 (641)
Q Consensus 504 ~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 563 (641)
++.+++.. .+.+..+|..+...+...|++++|...++++++++|+++..+..+..++...
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 292 IRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 99999876 3447779999999999999999999999999999999988888887776543
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-18 Score=172.05 Aligned_cols=289 Identities=11% Similarity=0.000 Sum_probs=225.3
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhcC---CCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 048321 276 DLDVSVINTLISMYSKCGDIDSARVLFDGI---CDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMI 352 (641)
Q Consensus 276 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll 352 (641)
+.+..++..+...+...|++++|.++|+++ .+.+...+..++..+...|++++|..+++++.+.. +.+...+..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 455666777777777788888888888776 33445567777778888888888888888887753 23455666777
Q ss_pred HHhcCcC-chHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChH
Q 048321 353 SGCGQSG-ALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFV 428 (641)
Q Consensus 353 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 428 (641)
..+...| ++++|...++.+.+.. +.+..++..+...|...|++++|...|+++.+ .+...|..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHH
Confidence 7777788 8888888888887765 44567788888889999999999998887754 34567777888899999999
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCC-----CCCChhHHHHHHHHhhccCChHHH
Q 048321 429 EALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGIS-----YNPELDHYSCMADLLGRKGKLKEA 503 (641)
Q Consensus 429 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~p~~~~~~~l~~~~~~~g~~~~A 503 (641)
+|+..|+++.+.. +.+...+..+...+...|++++|...++.+.+..... .......+..++.+|.+.|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 9999999998762 2344578888888999999999999999888643200 123467888999999999999999
Q ss_pred HHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHH-HhcCCch
Q 048321 504 LDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKY-ALGGRWD 567 (641)
Q Consensus 504 ~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~ 567 (641)
+..+++.. .+.+...|..+...+...|++++|...++++++++|+++..+..++.+| ...|+.+
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 99999876 4446778899999999999999999999999999999999999999988 4555543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.82 E-value=7.2e-16 Score=168.24 Aligned_cols=495 Identities=12% Similarity=0.083 Sum_probs=346.9
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHhH----HHHHHhhccCcCCCChhHHHHH
Q 048321 22 WNSQIREAVNKNEAHKTLLLFRQMKQNDIEPNNLTFPFIAKACAKLSDLIYSQM----IHGHIVKSPFVKCDRLDCAYKI 97 (641)
Q Consensus 22 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~----i~~~~~~~~~~~~~~~~~A~~~ 97 (641)
-+.|+...-++++..--+..++.-...|-+ ++.+++.|...|..++.=.+.-- .....+...++...++..|.-.
T Consensus 842 ~~~lv~~~ekrnrLkll~p~LE~~~~~g~~-~~~~hnalakiyid~n~npe~fL~~n~~yd~~~vgkyce~rDp~la~ia 920 (1630)
T 1xi4_A 842 TDELVAEVEKRNRLKLLLPWLEARIHEGCE-EPATHNALAKIYIDSNNNPERFLRENPYYDSRVVGKYCEKRDPHLACVA 920 (1630)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHhccCCCHHHHhhccCcccHHHHHHHHHhcCcchHHHH
Confidence 456666666677766666667766666655 78889999888876543211100 0000000001111222222222
Q ss_pred hhcc------------------------CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcC--CCCChhhHHHHHHHH
Q 048321 98 FDEM------------------------AVRDVASWNAMLVGFAQMGFLENVLRLFYNMRLVG--IQADFVTVMGLTQAA 151 (641)
Q Consensus 98 f~~~------------------------~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g--~~p~~~t~~~ll~~~ 151 (641)
+++- .+.|...|+.++.- .+ +.=.++.++-.... -.-|+.-....++++
T Consensus 921 y~~g~~d~eli~vt~~n~l~k~~arylv~r~d~~lW~~vl~~---~n--~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf 995 (1630)
T 1xi4_A 921 YERGQCDLELINVCNENSLFKSLSRYLVRRKDPELWGSVLLE---SN--PYRRPLIDQVVQTALSETQDPEEVSVTVKAF 995 (1630)
T ss_pred hcccCCcHHHHHHHhcchhHHHHHHHHHHhcCHHHHHHHhcC---Cc--HHHHHHHHHHHHhhcccccCHHHhHHHHHHH
Confidence 2211 12345555555421 11 11112333322211 123333456788888
Q ss_pred hccCChhHHHHHHHHHHHHc--CCCChhHHHHHHHHhHcCCChhHHHHHHhcccCCCCCchhHHHHHHHHhcCCCchHHH
Q 048321 152 IHAKHLSLLKSVHSFGIHIG--VDADVSVCNTWISSYAKCDDLKMAELVFCGIEERLRTVVSWNSMVAGCTYGDKFDDSL 229 (641)
Q Consensus 152 ~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 229 (641)
...|.+.++.++++.+.-.+ +.-+....+.|+.+..+. +..+...+.++... .+ ...+...+...|.+++|.
T Consensus 996 ~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~--~d---~~eIA~Iai~lglyEEAf 1069 (1630)
T 1xi4_A 996 MTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN--YD---APDIANIAISNELFEEAF 1069 (1630)
T ss_pred HhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh--cc---HHHHHHHHHhCCCHHHHH
Confidence 99999999999999998432 113446667777777766 55666666655543 22 455778889999999999
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC
Q 048321 230 NFYRHMMYNGFRLDVTTVVSLLSSFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGICDRT 309 (641)
Q Consensus 230 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 309 (641)
.+|++.. -.....+.++. ..+++++|.++.+++ .+..+|..+..++.+.|++++|++.|.+. .|
T Consensus 1070 ~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD 1133 (1630)
T 1xi4_A 1070 AIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DD 1133 (1630)
T ss_pred HHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CC
Confidence 9999852 12222233333 667889998888764 45788999999999999999999999775 67
Q ss_pred cchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 048321 310 RVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDM 389 (641)
Q Consensus 310 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 389 (641)
...|..++..+.+.|++++|.+.|...++.. +++...+.+..+|++.++++....+. + .++...+..+.+.
T Consensus 1134 ~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~ 1204 (1630)
T 1xi4_A 1134 PSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDR 1204 (1630)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHH
Confidence 7788999999999999999999999877654 33333345888899999888644442 2 4455667779999
Q ss_pred HHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHH
Q 048321 390 YSKCGSIGDARELFYALPEKIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAIS 469 (641)
Q Consensus 390 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 469 (641)
|...|++++|..+|... ..|..+...|.+.|++++|++.+++. -+..+|..+-.+|...|.+..|....
T Consensus 1205 le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cg 1273 (1630)
T 1xi4_A 1205 CYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCG 1273 (1630)
T ss_pred HHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 99999999999999996 48999999999999999999999987 34578999999999999999998875
Q ss_pred HHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCC-ChhHHHHHHHHHHHc--CCHHHHHHHHHHhHcc
Q 048321 470 IIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIH--LNIEIGEYVAYCLFKL 545 (641)
Q Consensus 470 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~ 545 (641)
.. +..+...+..++..|.+.|.+++|+.+++... ..| ....|.-|...+.+. ++..++.+.|..-..+
T Consensus 1274 l~--------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini 1345 (1630)
T 1xi4_A 1274 LH--------IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNI 1345 (1630)
T ss_pred Hh--------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhccc
Confidence 43 33566778899999999999999999998865 333 344666666666554 5778888888888887
Q ss_pred CC-----CCCccHHHHHHHHHhcCCchHHHHH
Q 048321 546 EP-----HSAAPYVEMANKYALGGRWDGVANI 572 (641)
Q Consensus 546 ~p-----~~~~~~~~l~~~~~~~g~~~eA~~~ 572 (641)
.| .++..|..++-+|.+.|+|+.|...
T Consensus 1346 ~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1346 PKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred chHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 77 6788899999999999999999864
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.81 E-value=9.3e-17 Score=169.54 Aligned_cols=413 Identities=8% Similarity=-0.012 Sum_probs=249.4
Q ss_pred ChhhHHHHHHHHhccCChhHHHHHHHHHHHHcCCCChhHHHHHHHHhHcCCChhHHHHHHhcccCCCCCchhHHHHHHH-
Q 048321 140 DFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISSYAKCDDLKMAELVFCGIEERLRTVVSWNSMVAG- 218 (641)
Q Consensus 140 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~- 218 (641)
|...|..++.. ...|+++.|..+++.+++. .+.+...|..++..+.+.|++++|..+|++.....|++..|...+..
T Consensus 12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~ 89 (530)
T 2ooe_A 12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYV 89 (530)
T ss_dssp CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 34455555553 4556666666666666653 22344556666666666666666666666666554455555555532
Q ss_pred HhcCCCchHHHH----HHHHHHHC-CCCCC-hhhHHHHHHHhcC---------CCchHHHHHHHHHHHHhCCCCchhHHH
Q 048321 219 CTYGDKFDDSLN----FYRHMMYN-GFRLD-VTTVVSLLSSFVC---------PEALVQGRLVHSHGIHYGFDLDVSVIN 283 (641)
Q Consensus 219 ~~~~g~~~~A~~----~~~~m~~~-g~~p~-~~t~~~ll~~~~~---------~~~~~~a~~~~~~~~~~g~~~~~~~~~ 283 (641)
....|+.++|.+ +|++.... |..|+ ...|...+....+ .|+++.|..+|+..++........+|.
T Consensus 90 ~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~ 169 (530)
T 2ooe_A 90 RETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWR 169 (530)
T ss_dssp HHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHH
T ss_pred HHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHH
Confidence 233455555544 44444322 33332 2233333322211 344555555555554410000011222
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHH------HcC---CCCCH--------H
Q 048321 284 TLISMYSKCGDIDSARVLFDGICDRTRVSWTAMISGYAQKGDLDEALRLFFAME------AAG---ELPDL--------V 346 (641)
Q Consensus 284 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~------~~~---~~p~~--------~ 346 (641)
.........|. ..+..++. .+.+++..|..++.++. +.. +.|+. .
T Consensus 170 ~~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~ 231 (530)
T 2ooe_A 170 DYNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVD 231 (530)
T ss_dssp HHHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHH
T ss_pred HHHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHH
Confidence 11111100000 00001100 12345566666665532 111 23331 2
Q ss_pred HHHHHHHHhc----CcCch----HHHHHHHHHHHHcCCCCchhHHHHHHHHHHh-------cCCHH-------HHHHHHh
Q 048321 347 TVLSMISGCG----QSGAL----ELGKWFDNYACSGGLKDNVMVCNALIDMYSK-------CGSIG-------DARELFY 404 (641)
Q Consensus 347 t~~~ll~~~~----~~~~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~ 404 (641)
.|...+.... ..++. ..+..++++.+... +.++.+|..++..+.+ .|+++ +|..+|+
T Consensus 232 ~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~ 310 (530)
T 2ooe_A 232 MWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYE 310 (530)
T ss_dssp HHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHH
Confidence 3333332221 11222 36677888887753 5567888888888875 68877 8999998
Q ss_pred hCCC---C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh--hhHHHHHHHHhccCChHHHHHHHHHHHhhhCC
Q 048321 405 ALPE---K-IVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNR--VTFLAVLQACTHTGFLEKGWAISIIQYDDKGI 478 (641)
Q Consensus 405 ~~~~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 478 (641)
+..+ | +...|..++..+.+.|++++|..+|+++.+. .|+. ..|...+..+.+.|++++|+++|+...+..+
T Consensus 311 ~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~- 387 (530)
T 2ooe_A 311 RAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR- 387 (530)
T ss_dssp HHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-
T ss_pred HHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-
Confidence 8764 3 5778999999999999999999999999985 6654 3677788888889999999999999985322
Q ss_pred CCCCChhHHHHHHHH-hhccCChHHHHHHHHhCC-CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCc----
Q 048321 479 SYNPELDHYSCMADL-LGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAA---- 551 (641)
Q Consensus 479 ~~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~---- 551 (641)
.+...|...+.. +...|++++|..+|+... ..| ++..|..++..+...|+.+.|..++++++...|.++.
T Consensus 388 ---~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~ 464 (530)
T 2ooe_A 388 ---TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGE 464 (530)
T ss_dssp ---CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHH
T ss_pred ---CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHH
Confidence 223333332222 336899999999999865 334 6778999999999999999999999999998776655
Q ss_pred cHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 552 PYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 552 ~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
.|...+......|+.+.+.++.+.+.+.
T Consensus 465 lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 465 IWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6777788888899999999998887654
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.81 E-value=5.1e-19 Score=173.61 Aligned_cols=287 Identities=9% Similarity=0.021 Sum_probs=135.4
Q ss_pred HcCCChhHHHHHHhcccCCCCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCchHHHHHH
Q 048321 187 AKCDDLKMAELVFCGIEERLRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVVSLLSSFVCPEALVQGRLV 266 (641)
Q Consensus 187 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 266 (641)
-+.|++++|.++++++.. | .+|..++.++.+.|++++|++.|.+. +|..+|..++.++...|++++|...
T Consensus 14 ~~~~~ld~A~~fae~~~~--~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~y 83 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNE--P--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCC--h--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 367889999999999855 4 48999999999999999999999653 6778999999999999999999998
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH
Q 048321 267 HSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGICDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLV 346 (641)
Q Consensus 267 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 346 (641)
+...++. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|.+++|..+|..+ .
T Consensus 84 l~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~ 149 (449)
T 1b89_A 84 LQMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------S 149 (449)
T ss_dssp ---------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------T
T ss_pred HHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------h
Confidence 8877764 45578889999999999999998888864 67779999999999999999999999976 3
Q ss_pred HHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCC
Q 048321 347 TVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKIVVSWTTMIAGCALNGE 426 (641)
Q Consensus 347 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 426 (641)
.|..+..++.+.|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.-...++..|.+.|+
T Consensus 150 n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~ 222 (449)
T 1b89_A 150 NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGY 222 (449)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCC
Confidence 6888999999999999999999887 368899999999999999999988877765 344445568889999999
Q ss_pred hHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHh--ccCChHHHHHHHHHHHhhhCCCCCC------ChhHHHHHHHHhhcc
Q 048321 427 FVEALDLFHQLMELDLRPNR-VTFLAVLQACT--HTGFLEKGWAISIIQYDDKGISYNP------ELDHYSCMADLLGRK 497 (641)
Q Consensus 427 ~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~--~~g~~~~a~~~~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~ 497 (641)
+++|+.+++..... .+.. ..|+.+.-+|+ +.+++.+..+.|..- -. ++| +...|.-++.+|...
T Consensus 223 ~eEai~lLe~aL~l--e~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~---in--i~k~~~~~~~~~~w~e~~~ly~~~ 295 (449)
T 1b89_A 223 FEELITMLEAALGL--ERAHMGMFTELAILYSKFKPQKMREHLELFWSR---VN--IPKVLRAAEQAHLWAELVFLYDKY 295 (449)
T ss_dssp HHHHHHHHHHHTTS--TTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT---SC--HHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCC--cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH---hc--CcHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999998854 3433 35555544444 455666666665432 22 444 467799999999999
Q ss_pred CChHHHHHHHHhCC
Q 048321 498 GKLKEALDFVQSMP 511 (641)
Q Consensus 498 g~~~~A~~~~~~~~ 511 (641)
++++.|...+-+-+
T Consensus 296 ~e~d~A~~tm~~h~ 309 (449)
T 1b89_A 296 EEYDNAIITMMNHP 309 (449)
T ss_dssp TCHHHHHHHHHHST
T ss_pred chHHHHHHHHHhCC
Confidence 99999988766653
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=8.6e-18 Score=165.82 Aligned_cols=265 Identities=10% Similarity=-0.012 Sum_probs=228.3
Q ss_pred CCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHH
Q 048321 307 DRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNAL 386 (641)
Q Consensus 307 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 386 (641)
..+...+..+...+...|++++|+.+|+++.+.. +.+...+..+...+...|++++|..+++.+.+.. +.+..++..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 3466678888999999999999999999998764 2334455566777888999999999999999865 5577889999
Q ss_pred HHHHHhcC-CHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCh
Q 048321 387 IDMYSKCG-SIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFL 462 (641)
Q Consensus 387 i~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 462 (641)
...|...| ++++|...|++... .+...|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhH
Confidence 99999999 99999999998765 356789999999999999999999999999863 23345777788899999999
Q ss_pred HHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-C----------CCChhHHHHHHHHHHHcCC
Q 048321 463 EKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-I----------KSDAGIWGTLLCACKIHLN 531 (641)
Q Consensus 463 ~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~----------~p~~~~~~~ll~~~~~~g~ 531 (641)
++|...++.+.+..+ .+...+..++..+.+.|++++|...++++. . +.+..+|..+...+...|+
T Consensus 176 ~~A~~~~~~al~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 251 (330)
T 3hym_B 176 KLAERFFSQALSIAP----EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK 251 (330)
T ss_dssp HHHHHHHHHHHTTCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCC----CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC
Confidence 999999999986433 457889999999999999999999998864 1 3346789999999999999
Q ss_pred HHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048321 532 IEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 532 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
+++|+..+++++++.|+++..+..++.+|...|++++|.+.+++..+
T Consensus 252 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 252 YAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999987664
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.80 E-value=2.8e-18 Score=172.29 Aligned_cols=279 Identities=13% Similarity=0.001 Sum_probs=220.3
Q ss_pred HHhcCCHHHHHH-HHhcCC---CC----CcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCc
Q 048321 289 YSKCGDIDSARV-LFDGIC---DR----TRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGA 360 (641)
Q Consensus 289 ~~~~g~~~~A~~-~~~~~~---~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~ 360 (641)
+.-.|++++|.. .|++.. +. +...|..+...+.+.|++++|+..|+++.+.. +.+...+..+...+...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 334577888887 777542 11 34568888888999999999999999988763 3456677888888888999
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhHHHH---------------HHHHHH
Q 048321 361 LELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE--K-IVVSWTT---------------MIAGCA 422 (641)
Q Consensus 361 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~---------------li~~~~ 422 (641)
+++|...++.+.+.. +.+..++..+...|...|++++|...|+++.. | +...+.. .+..+.
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 999999999888875 55778888899999999999999999987654 2 2222221 233344
Q ss_pred HcCChHHHHHHHHHHHHcCCCCC---hhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCC
Q 048321 423 LNGEFVEALDLFHQLMELDLRPN---RVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGK 499 (641)
Q Consensus 423 ~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 499 (641)
..|++++|+..|+++.+. .|+ ..++..+...+...|++++|...|+.+.+..+ .+...+..++.++.+.|+
T Consensus 193 ~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~----~~~~~~~~l~~~~~~~g~ 266 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRL--DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP----NDYLLWNKLGATLANGNQ 266 (368)
T ss_dssp HHHHHHHHHHHHHHHHHH--STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTC
T ss_pred hcccHHHHHHHHHHHHHh--CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc----CCHHHHHHHHHHHHHcCC
Confidence 889999999999999986 454 56888889999999999999999999986433 457889999999999999
Q ss_pred hHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCC-----------CccHHHHHHHHHhcCCc
Q 048321 500 LKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHS-----------AAPYVEMANKYALGGRW 566 (641)
Q Consensus 500 ~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~ 566 (641)
+++|+..++++. .+.+..+|..+...+...|++++|...+++++++.|++ +..|..++.+|...|++
T Consensus 267 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 346 (368)
T 1fch_A 267 SEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQS 346 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCG
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCCh
Confidence 999999999976 44467789999999999999999999999999999887 68899999999999999
Q ss_pred hHHHHHHHH
Q 048321 567 DGVANIRTM 575 (641)
Q Consensus 567 ~eA~~~~~~ 575 (641)
++|..++++
T Consensus 347 ~~A~~~~~~ 355 (368)
T 1fch_A 347 DAYGAADAR 355 (368)
T ss_dssp GGHHHHHTT
T ss_pred HhHHHhHHH
Confidence 999998763
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.80 E-value=3.5e-18 Score=167.66 Aligned_cols=286 Identities=13% Similarity=0.084 Sum_probs=122.4
Q ss_pred CCCChhHHHHHhhccCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHH
Q 048321 87 KCDRLDCAYKIFDEMAVRDVASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSF 166 (641)
Q Consensus 87 ~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 166 (641)
+.|++++|.+.+++++.|+ +|..|..++.+.|++++|++.|.+ .+|..+|..++.++...|++++|...++.
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4688999999999997664 899999999999999999999975 36888999999999999999999998888
Q ss_pred HHHHcCCCChhHHHHHHHHhHcCCChhHHHHHHhcccCCCCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCCCCChhh
Q 048321 167 GIHIGVDADVSVCNTWISSYAKCDDLKMAELVFCGIEERLRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTT 246 (641)
Q Consensus 167 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 246 (641)
.++. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|++++|..+|..+ ..
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~-----pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n 150 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING-----PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SN 150 (449)
T ss_dssp ------------------------CHHHHTTTTTC-----C----------------CTTTHHHHHHHT---------TC
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC-----CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hh
Confidence 8774 45678899999999999999999988853 77789999999999999999999999977 47
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhCCCh
Q 048321 247 VVSLLSSFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGICDRTRVSWTAMISGYAQKGDL 326 (641)
Q Consensus 247 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 326 (641)
|..+..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.....++..|.+.|++
T Consensus 151 ~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~ 223 (449)
T 1b89_A 151 FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYF 223 (449)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCH
Confidence 888889999999999988888877 377888888999999999999877776654 3333345678888888888
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHh--cCcCchHHHHHHHHHHHHcCCCC------chhHHHHHHHHHHhcCCHHH
Q 048321 327 DEALRLFFAMEAAGELPDLVTVLSMISGC--GQSGALELGKWFDNYACSGGLKD------NVMVCNALIDMYSKCGSIGD 398 (641)
Q Consensus 327 ~~A~~~~~~m~~~~~~p~~~t~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~ 398 (641)
++|..+++...... +-....|+-+--++ -+.+++.+..+.|.. +.+++| +...|.-++-.|..-++++.
T Consensus 224 eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~ 300 (449)
T 1b89_A 224 EELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDN 300 (449)
T ss_dssp HHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHHHHHHhhchHHH
Confidence 88888888876543 33333444443333 334455555444431 222222 34566667777777777776
Q ss_pred HHHHHhhC
Q 048321 399 ARELFYAL 406 (641)
Q Consensus 399 A~~~~~~~ 406 (641)
|....-+-
T Consensus 301 A~~tm~~h 308 (449)
T 1b89_A 301 AIITMMNH 308 (449)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHhC
Confidence 66654433
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.6e-16 Score=165.96 Aligned_cols=366 Identities=10% Similarity=-0.048 Sum_probs=264.8
Q ss_pred ChhHHHHHHHHhHc----CCChhHHHHHHhcccCCCCCchhHHHHHHHHhc----CCCchHHHHHHHHHHHCCCCCChhh
Q 048321 175 DVSVCNTWISSYAK----CDDLKMAELVFCGIEERLRTVVSWNSMVAGCTY----GDKFDDSLNFYRHMMYNGFRLDVTT 246 (641)
Q Consensus 175 ~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t 246 (641)
+...+..|...|.. .+++++|...|++..+. .+...+..|...|.. .+++++|++.|++..+.| +...
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a 113 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ-GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQA 113 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 44455555555555 56666666666655442 345556666666666 666677777777666654 3344
Q ss_pred HHHHHHHhcC----CCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHhcCC-CCCcchHHHHH
Q 048321 247 VVSLLSSFVC----PEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSK----CGDIDSARVLFDGIC-DRTRVSWTAMI 317 (641)
Q Consensus 247 ~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~-~~~~~~~~~li 317 (641)
+..+...+.. .+++++|...++...+.| +...+..|..+|.. .++.++|.+.|++.. ..+..++..+.
T Consensus 114 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg 190 (490)
T 2xm6_A 114 QQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLG 190 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4444444544 567777777777776654 45666677777776 678888888887653 34566777777
Q ss_pred HHHHh----CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcC----cCchHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 048321 318 SGYAQ----KGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQ----SGALELGKWFDNYACSGGLKDNVMVCNALIDM 389 (641)
Q Consensus 318 ~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 389 (641)
..|.. .++.++|+..|++..+.| +...+..+...+.. .++.++|..+++...+.| +...+..+..+
T Consensus 191 ~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 264 (490)
T 2xm6_A 191 YMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYI 264 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHH
T ss_pred HHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHH
Confidence 77777 788888888888887764 44455555555543 678889999888888765 34566677777
Q ss_pred HHh----cCCHHHHHHHHhhCCC-CChhHHHHHHHHHHHc-----CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhcc
Q 048321 390 YSK----CGSIGDARELFYALPE-KIVVSWTTMIAGCALN-----GEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHT 459 (641)
Q Consensus 390 ~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 459 (641)
|.. .++.++|...|+...+ .+...+..+...|... +++++|+..|++..+.| +...+..+...|...
T Consensus 265 y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~ 341 (490)
T 2xm6_A 265 LEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRL 341 (490)
T ss_dssp HHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHS
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhC
Confidence 877 8899999999988765 4667778888888877 89999999999999864 345666666666665
Q ss_pred C---ChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhc----cCChHHHHHHHHhCCCCCChhHHHHHHHHHHH----
Q 048321 460 G---FLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGR----KGKLKEALDFVQSMPIKSDAGIWGTLLCACKI---- 528 (641)
Q Consensus 460 g---~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~---- 528 (641)
| ++++|.+.|+...+. .+...+..+..+|.. .+++++|...|++.....++..+..|...+..
T Consensus 342 g~~~~~~~A~~~~~~a~~~------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~ 415 (490)
T 2xm6_A 342 GSEEEHKKAVEWFRKAAAK------GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGV 415 (490)
T ss_dssp CCHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSS
T ss_pred CCcccHHHHHHHHHHHHHC------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCC
Confidence 6 789999999998842 357788888888888 89999999999997645567788888888888
Q ss_pred cCCHHHHHHHHHHhHccCCC---CCccHHHHHHHHHh
Q 048321 529 HLNIEIGEYVAYCLFKLEPH---SAAPYVEMANKYAL 562 (641)
Q Consensus 529 ~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 562 (641)
.++.++|...++++.+.+|+ ++.....++.++..
T Consensus 416 ~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 416 ERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp CCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 89999999999999999854 66677777766554
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.3e-14 Score=158.41 Aligned_cols=368 Identities=10% Similarity=0.075 Sum_probs=237.5
Q ss_pred HHHHHHHHhCCChhHHHHHHHHhHhCCC--CCCcccHHHHHHHHhccCCchHHhHHHHHHhh-------ccCcCCCChhH
Q 048321 23 NSQIREAVNKNEAHKTLLLFRQMKQNDI--EPNNLTFPFIAKACAKLSDLIYSQMIHGHIVK-------SPFVKCDRLDC 93 (641)
Q Consensus 23 ~~li~~~~~~~~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~~~~~~~~~~~~~~i~~~~~~-------~~~~~~~~~~~ 93 (641)
...+.+|...|.+.+|++++++..-.+- .-+....+.++..-.+. +...+.......-. .-+...|.+++
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d~~eIA~Iai~lglyEE 1067 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYDAPDIANIAISNELFEE 1067 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhccHHHHHHHHHhCCCHHH
Confidence 5678899999999999999999984321 11223444455444443 33333333332210 00145678888
Q ss_pred HHHHhhccCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHHcCC
Q 048321 94 AYKIFDEMAVRDVASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVD 173 (641)
Q Consensus 94 A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 173 (641)
|..+|++... .....+.++. ..+++++|.++.++. -+..+|..+.+++...|++++|...|...
T Consensus 1068 Af~IYkKa~~-~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA------ 1131 (1630)
T 1xi4_A 1068 AFAIFRKFDV-NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------ 1131 (1630)
T ss_pred HHHHHHHcCC-HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------
Confidence 8888888642 1222233322 567788888877754 23567778888888888888888777553
Q ss_pred CChhHHHHHHHHhHcCCChhHHHHHHhcccCCCCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 048321 174 ADVSVCNTWISSYAKCDDLKMAELVFCGIEERLRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVVSLLSS 253 (641)
Q Consensus 174 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 253 (641)
.|...|..++..+.+.|++++|.+.+.......+++...+.++.+|++.+++++...+. . .|+...+..+...
T Consensus 1132 dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~ 1204 (1630)
T 1xi4_A 1132 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDR 1204 (1630)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHH
Confidence 46667777888888888888888888765554344444445777888887777533332 1 2566667777788
Q ss_pred hcCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHH
Q 048321 254 FVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGICDRTRVSWTAMISGYAQKGDLDEALRLF 333 (641)
Q Consensus 254 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 333 (641)
|...|++++|...|..+ ..|..+..+|.+.|++++|.+.+++. .+..+|..+-.+|...|++..|....
T Consensus 1205 le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA--~n~~aWkev~~acve~~Ef~LA~~cg 1273 (1630)
T 1xi4_A 1205 CYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCG 1273 (1630)
T ss_pred HHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh--CCHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 88888888888888774 36778888888888888888888766 44567777777777777777776655
Q ss_pred HHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh--cCCHHHHHHHHhhCCC---
Q 048321 334 FAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSK--CGSIGDARELFYALPE--- 408 (641)
Q Consensus 334 ~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~--- 408 (641)
.. +..++..+..++..|.+.|.+++|..+++..+... +-....|+-|...|++ -+++.++.+.|..-..
T Consensus 1274 l~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~rini~k 1347 (1630)
T 1xi4_A 1274 LH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPK 1347 (1630)
T ss_pred Hh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccch
Confidence 43 23344455567777777777777777776666544 3344455555555554 3455555555554332
Q ss_pred -----CChhHHHHHHHHHHHcCChHHHH
Q 048321 409 -----KIVVSWTTMIAGCALNGEFVEAL 431 (641)
Q Consensus 409 -----~~~~~~~~li~~~~~~g~~~~A~ 431 (641)
.+...|..++..|.+.|+++.|.
T Consensus 1348 ~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1348 VLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 24456777777777777777776
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.78 E-value=5.9e-16 Score=163.41 Aligned_cols=410 Identities=10% Similarity=0.035 Sum_probs=290.4
Q ss_pred CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHHcCCCChhHHHHH
Q 048321 103 VRDVASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTW 182 (641)
Q Consensus 103 ~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 182 (641)
+.|...|..++. +.+.|++++|..+|+++.+. .+-+...|...+..+.+.|+++.|..+++++++.. |+...|..+
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~ 85 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCY 85 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHH
Confidence 347789999998 58899999999999999875 23455578999999999999999999999999864 677788777
Q ss_pred HHH-hHcCCChhHHHH----HHhcccC----CCCCchhHHHHHHHHhc---------CCCchHHHHHHHHHHHCCCCCCh
Q 048321 183 ISS-YAKCDDLKMAEL----VFCGIEE----RLRTVVSWNSMVAGCTY---------GDKFDDSLNFYRHMMYNGFRLDV 244 (641)
Q Consensus 183 l~~-~~~~g~~~~A~~----~~~~~~~----~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~p~~ 244 (641)
+.. ....|+.+.|.+ +|+.... .+.+...|...+....+ .|++++|..+|++.... |+.
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~---P~~ 162 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN---PMI 162 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS---CCT
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc---hhh
Confidence 753 345688877765 6665532 13456788888876654 68899999999999872 432
Q ss_pred ---hhHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc-------CC------CC
Q 048321 245 ---TTVVSLLSSFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDG-------IC------DR 308 (641)
Q Consensus 245 ---~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-------~~------~~ 308 (641)
..|...... +.. .| ..+...++. .+.+++..|..++.. +. .|
T Consensus 163 ~~~~~~~~~~~~-------e~~---------~~----~~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p 220 (530)
T 2ooe_A 163 NIEQLWRDYNKY-------EEG---------IN----IHLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPP 220 (530)
T ss_dssp THHHHHHHHHHH-------HHH---------HC----HHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCC
T ss_pred hHHHHHHHHHHH-------HHh---------hc----hhHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCC
Confidence 222211110 000 00 001111111 122334445444332 11 12
Q ss_pred C--------cchHHHHHHHHHhC----CCh----hHHHHHHHHHHHcCCCCCHHHHHHHHHHhcC-------cCchH---
Q 048321 309 T--------RVSWTAMISGYAQK----GDL----DEALRLFFAMEAAGELPDLVTVLSMISGCGQ-------SGALE--- 362 (641)
Q Consensus 309 ~--------~~~~~~li~~~~~~----g~~----~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~-------~~~~~--- 362 (641)
+ ...|...+...... ++. +++..+|++..... +-+...|......+.+ .|+++
T Consensus 221 ~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~ 299 (530)
T 2ooe_A 221 QNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAK 299 (530)
T ss_dssp C--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHH
T ss_pred CCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhh
Confidence 1 23555555433322 232 37788898888752 3345566666666553 68877
Q ss_pred ----HHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-Ch-hHHHHHHHHHHHcCChHHHHHHH
Q 048321 363 ----LGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE--K-IV-VSWTTMIAGCALNGEFVEALDLF 434 (641)
Q Consensus 363 ----~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~-~~~~~li~~~~~~g~~~~A~~~~ 434 (641)
.|..+++..++.-.+.+..++..++..+.+.|++++|..+|+++.+ | +. ..|...+..+.+.|+.++|.++|
T Consensus 300 ~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~ 379 (530)
T 2ooe_A 300 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 379 (530)
T ss_dssp HHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHH
Confidence 8999999988633355688999999999999999999999998764 3 33 58999999999999999999999
Q ss_pred HHHHHcCCCCCh-hhHHHHHHH-HhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-
Q 048321 435 HQLMELDLRPNR-VTFLAVLQA-CTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP- 511 (641)
Q Consensus 435 ~~m~~~g~~p~~-~t~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 511 (641)
++..+. .|+. ..+...... +...|+.++|..+|+...+..+ .+...|..+++.+.+.|+.++|..+|++..
T Consensus 380 ~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p----~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~ 453 (530)
T 2ooe_A 380 KKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG----DIPEYVLAYIDYLSHLNEDNNTRVLFERVLT 453 (530)
T ss_dssp HHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHH
T ss_pred HHHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCC----CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHh
Confidence 999985 3432 333332222 3468999999999999997654 467889999999999999999999999975
Q ss_pred C---CCC--hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCC
Q 048321 512 I---KSD--AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPH 548 (641)
Q Consensus 512 ~---~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 548 (641)
. .|+ ...|...+.....+|+.+.+..+.+++.+..|+
T Consensus 454 ~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 454 SGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp SCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred ccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 2 232 338988899999999999999999999999885
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.2e-16 Score=164.40 Aligned_cols=369 Identities=8% Similarity=-0.075 Sum_probs=190.7
Q ss_pred hhHHHHHHHHhHcCCChhHHHHHHhcccCC----------CCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCC------
Q 048321 176 VSVCNTWISSYAKCDDLKMAELVFCGIEER----------LRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNG------ 239 (641)
Q Consensus 176 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------ 239 (641)
...||.|...|...|+.++|++.|++..+. +....+|+.+...|...|++++|...+++..+..
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 345666666677777777776666554221 2234556666666666666666666666554310
Q ss_pred CCC-ChhhHHHHHHHh--cCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHH
Q 048321 240 FRL-DVTTVVSLLSSF--VCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGICDRTRVSWTAM 316 (641)
Q Consensus 240 ~~p-~~~t~~~ll~~~--~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 316 (641)
..+ ...++.....++ ...+++++|...|+..++.. +.++..+..+..++.+
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~------------------------- 184 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYR------------------------- 184 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHH-------------------------
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH-------------------------
Confidence 001 112222222221 12234444444444444432 1222222222222111
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH----hcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 048321 317 ISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISG----CGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSK 392 (641)
Q Consensus 317 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 392 (641)
+...++.++|++.|++..+.. +.+...+..+... ....++.++|..+++...... +.+..++..+...|.+
T Consensus 185 ---l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~ 259 (472)
T 4g1t_A 185 ---LDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRR 259 (472)
T ss_dssp ---HHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHH
T ss_pred ---hcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHH
Confidence 223344455555555544432 1122222222221 122344555555555555443 3344455555555555
Q ss_pred cCCHHHHHHHHhhCCC---CChhHHHHHHHHHHH-------------------cCChHHHHHHHHHHHHcCCCCChhhHH
Q 048321 393 CGSIGDARELFYALPE---KIVVSWTTMIAGCAL-------------------NGEFVEALDLFHQLMELDLRPNRVTFL 450 (641)
Q Consensus 393 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~-------------------~g~~~~A~~~~~~m~~~g~~p~~~t~~ 450 (641)
.|++++|...|++..+ .+..+|..+...|.. .+..++|+..|++..+.. +.+..++.
T Consensus 260 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~ 338 (472)
T 4g1t_A 260 KDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCS 338 (472)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHH
T ss_pred cCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-Cchhhhhh
Confidence 6666666555555433 223344444333321 234678888898888763 23345788
Q ss_pred HHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChh----HHHHHHH-HhhccCChHHHHHHHHhCC-CCCChhHHHHHHH
Q 048321 451 AVLQACTHTGFLEKGWAISIIQYDDKGISYNPELD----HYSCMAD-LLGRKGKLKEALDFVQSMP-IKSDAGIWGTLLC 524 (641)
Q Consensus 451 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~----~~~~l~~-~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~ll~ 524 (641)
.+...+...|++++|...|+++.+ +.|+.. .+..+.. .+.+.|++++|+..|++.. ..|+...+..
T Consensus 339 ~lg~~~~~~~~~~~A~~~~~kaL~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~--- 410 (472)
T 4g1t_A 339 ILASLHALADQYEEAEYYFQKEFS-----KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK--- 410 (472)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH-----SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH---
T ss_pred hHHHHHHHhccHHHHHHHHHHHHh-----cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH---
Confidence 888899999999999999999885 334332 2333333 3457899999999998865 6666544332
Q ss_pred HHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCceeEE
Q 048321 525 ACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRNQVKKFPGQSLF 590 (641)
Q Consensus 525 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~~~~~~~~~s~~ 590 (641)
....+..++++.++.+|+++.+|..+|.+|...|++++|.+.+++..+.+.....+.+|+
T Consensus 411 ------~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 411 ------MKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp ------HHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred ------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 234556778888999999999999999999999999999999999988766555555554
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.77 E-value=7.9e-18 Score=168.85 Aligned_cols=259 Identities=9% Similarity=-0.073 Sum_probs=213.1
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 048321 309 TRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALID 388 (641)
Q Consensus 309 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 388 (641)
+...|..+...+.+.|++++|..+|+++.+.. +.+..++..+...+...|++++|...++.+.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45568888999999999999999999988763 3456788888888999999999999999988865 556788999999
Q ss_pred HHHhcCCHHHHHHHHhhCCCCC-------------hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC---ChhhHHHH
Q 048321 389 MYSKCGSIGDARELFYALPEKI-------------VVSWTTMIAGCALNGEFVEALDLFHQLMELDLRP---NRVTFLAV 452 (641)
Q Consensus 389 ~~~~~g~~~~A~~~~~~~~~~~-------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~l 452 (641)
.|...|++++|...|+++.+.+ ...+..+...+...|++++|+..|+++.+. .| +..++..+
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~l 219 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ--NGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHH--SCSSCCHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh--CcCccCHHHHHHH
Confidence 9999999999999998876521 123345578889999999999999999986 44 46688889
Q ss_pred HHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCC-ChhHHHHHHHHHHHcC
Q 048321 453 LQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHL 530 (641)
Q Consensus 453 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g 530 (641)
...+...|++++|...|+.+.+..+ .+...|..++.+|.+.|++++|+..|+++. ..| +..+|..+...|...|
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 295 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVRP----EDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLG 295 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCC
Confidence 9999999999999999999996543 568899999999999999999999999976 344 5778999999999999
Q ss_pred CHHHHHHHHHHhHccCCC------------CCccHHHHHHHHHhcCCchHHHHHHHH
Q 048321 531 NIEIGEYVAYCLFKLEPH------------SAAPYVEMANKYALGGRWDGVANIRTM 575 (641)
Q Consensus 531 ~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~eA~~~~~~ 575 (641)
++++|...+++++++.|+ +...|..++.++...|+.+.|.++.+.
T Consensus 296 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 296 AYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp CCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999999999999876 366789999999999999999887654
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.76 E-value=4.8e-16 Score=149.62 Aligned_cols=268 Identities=10% Similarity=-0.062 Sum_probs=212.9
Q ss_pred HHhcCCHHHHHHHHhcCCCCCc----chHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHH
Q 048321 289 YSKCGDIDSARVLFDGICDRTR----VSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELG 364 (641)
Q Consensus 289 ~~~~g~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a 364 (641)
....|++..|+..++.....++ .....+..+|...|+++.|+..++. .-.|+..++..+...+...++.+.|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHH
Confidence 4456888888888887654432 2445567888999999998886654 2356677888888888888999999
Q ss_pred HHHHHHHHHcCC-CCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 048321 365 KWFDNYACSGGL-KDNVMVCNALIDMYSKCGSIGDARELFYALPEKIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLR 443 (641)
Q Consensus 365 ~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 443 (641)
...++.+...+. +.+..++..+...|...|++++|.+.|++ ..+...+..++..+.+.|++++|.+.|+++.+. .
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~ 160 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--D 160 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--C
Confidence 999999888764 44567777888999999999999999999 567889999999999999999999999999987 4
Q ss_pred CChhhHH---HHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCC-ChhH
Q 048321 444 PNRVTFL---AVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGI 518 (641)
Q Consensus 444 p~~~t~~---~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~ 518 (641)
|+..... ..+..+...|++++|..+|+++.+..+ .+...++.++.++.+.|++++|+..++++. ..| ++.+
T Consensus 161 p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p----~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 236 (291)
T 3mkr_A 161 EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS----PTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET 236 (291)
T ss_dssp TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 7654221 233444556999999999999997654 678899999999999999999999999976 444 6778
Q ss_pred HHHHHHHHHHcCCHHH-HHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHH
Q 048321 519 WGTLLCACKIHLNIEI-GEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANI 572 (641)
Q Consensus 519 ~~~ll~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~ 572 (641)
|..++..+...|+.++ +.++++++++++|+++. +.++..+.+.++++..-
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~----~~d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPF----IKEYRAKENDFDRLVLQ 287 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChH----HHHHHHHHHHHHHHHHH
Confidence 9999999999998865 67899999999999754 34566666667666543
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.76 E-value=4.2e-15 Score=155.17 Aligned_cols=351 Identities=12% Similarity=0.052 Sum_probs=293.6
Q ss_pred CCchhHHHHHHHHhc----CCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhcC----CCchHHHHHHHHHHHHhCCCCc
Q 048321 207 RTVVSWNSMVAGCTY----GDKFDDSLNFYRHMMYNGFRLDVTTVVSLLSSFVC----PEALVQGRLVHSHGIHYGFDLD 278 (641)
Q Consensus 207 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~ 278 (641)
.++..+..+...|.. .+++++|+..|++..+.| +...+..+-..+.. .+++++|...+....+.| +
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 110 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L 110 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 577788888888887 899999999999998874 45666677777776 899999999999998876 6
Q ss_pred hhHHHHHHHHHHh----cCCHHHHHHHHhcCCC-CCcchHHHHHHHHHh----CCChhHHHHHHHHHHHcCCCCCHHHHH
Q 048321 279 VSVINTLISMYSK----CGDIDSARVLFDGICD-RTRVSWTAMISGYAQ----KGDLDEALRLFFAMEAAGELPDLVTVL 349 (641)
Q Consensus 279 ~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~t~~ 349 (641)
...+..|..+|.. .+++++|...|++..+ .+..++..|...|.. .+++++|++.|++..+.| +...+.
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~ 187 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCN 187 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 6778889999988 8899999999998743 456678888888887 789999999999998875 566666
Q ss_pred HHHHHhcC----cCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh----cCCHHHHHHHHhhCCC-CChhHHHHHHHH
Q 048321 350 SMISGCGQ----SGALELGKWFDNYACSGGLKDNVMVCNALIDMYSK----CGSIGDARELFYALPE-KIVVSWTTMIAG 420 (641)
Q Consensus 350 ~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~ 420 (641)
.+...+.. .++.++|..++....+.| +...+..+..+|.. .+++++|...|+...+ .+...+..+...
T Consensus 188 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~ 264 (490)
T 2xm6_A 188 QLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYI 264 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666665 789999999999999875 45677888888886 8999999999998765 466778888888
Q ss_pred HHH----cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhcc-----CChHHHHHHHHHHHhhhCCCCCCChhHHHHHH
Q 048321 421 CAL----NGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHT-----GFLEKGWAISIIQYDDKGISYNPELDHYSCMA 491 (641)
Q Consensus 421 ~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~ 491 (641)
|.. .+++++|+..|++..+.| +...+..+...|... +++++|...|+...+ .+ +...+..+.
T Consensus 265 y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~-~~-----~~~a~~~lg 335 (490)
T 2xm6_A 265 LEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAE-QG-----DATAQANLG 335 (490)
T ss_dssp HHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHH-TT-----CHHHHHHHH
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHh-cC-----CHHHHHHHH
Confidence 888 899999999999998764 445666677777776 899999999999984 23 456777888
Q ss_pred HHhhccC---ChHHHHHHHHhCCCCCChhHHHHHHHHHHH----cCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHh--
Q 048321 492 DLLGRKG---KLKEALDFVQSMPIKSDAGIWGTLLCACKI----HLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYAL-- 562 (641)
Q Consensus 492 ~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-- 562 (641)
.+|.+.| ++++|++.|++.....++..+..|...|.. .++.++|...++++.+.. ++..+..++.+|..
T Consensus 336 ~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~ 413 (490)
T 2xm6_A 336 AIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGL 413 (490)
T ss_dssp HHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTS
T ss_pred HHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCC
Confidence 8888767 789999999997755678889999999988 899999999999998864 57899999999998
Q ss_pred --cCCchHHHHHHHHHHhCC
Q 048321 563 --GGRWDGVANIRTMMKRNQ 580 (641)
Q Consensus 563 --~g~~~eA~~~~~~m~~~~ 580 (641)
.+++++|.+.+++..+.+
T Consensus 414 g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 414 GVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCC
Confidence 899999999999988866
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.75 E-value=6.3e-17 Score=162.41 Aligned_cols=249 Identities=10% Similarity=-0.006 Sum_probs=117.0
Q ss_pred hHcCCChhHHHH-HHhcccCCCC-----CchhHHHHHHHHhcCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCc
Q 048321 186 YAKCDDLKMAEL-VFCGIEERLR-----TVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVVSLLSSFVCPEA 259 (641)
Q Consensus 186 ~~~~g~~~~A~~-~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 259 (641)
+.-.|++++|.. .|++.....| +...|..+...+.+.|++++|+..|+++.+..
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-------------------- 94 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-------------------- 94 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC--------------------
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------------------
Confidence 334466666666 6665443311 24456666666666666666666666666542
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC---CCCCcchHHHHHHHHHhCCChhHHHHHHHHH
Q 048321 260 LVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGI---CDRTRVSWTAMISGYAQKGDLDEALRLFFAM 336 (641)
Q Consensus 260 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 336 (641)
+.+..++..+..+|.+.|++++|...|+++ .+.+..+|..+...|...|++++|...|+++
T Consensus 95 ----------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 158 (368)
T 1fch_A 95 ----------------PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDW 158 (368)
T ss_dssp ----------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ----------------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 223344444555555555555555555443 2234445555555566666666666666655
Q ss_pred HHcCCCCCHHH-HHH---------------HHHHhcCcCchHHHHHHHHHHHHcCCCC-chhHHHHHHHHHHhcCCHHHH
Q 048321 337 EAAGELPDLVT-VLS---------------MISGCGQSGALELGKWFDNYACSGGLKD-NVMVCNALIDMYSKCGSIGDA 399 (641)
Q Consensus 337 ~~~~~~p~~~t-~~~---------------ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A 399 (641)
.... |+... +.. .+..+...|++++|...++.+.+..... +..++..+...|.+.|++++|
T Consensus 159 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A 236 (368)
T 1fch_A 159 LRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKA 236 (368)
T ss_dssp HHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhC--cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 5532 21110 000 1111224455555555555555433111 344555555555555555555
Q ss_pred HHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHhccCChHHHHHHHHHHHh
Q 048321 400 RELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPN-RVTFLAVLQACTHTGFLEKGWAISIIQYD 474 (641)
Q Consensus 400 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 474 (641)
...|+++.. .+..+|..+...+...|++++|+..|+++.+. .|+ ..++..+..+|...|++++|...|+.+.+
T Consensus 237 ~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 313 (368)
T 1fch_A 237 VDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEALN 313 (368)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 555554432 23445555555555555555555555555543 222 23444445555555555555555555543
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.75 E-value=5.3e-17 Score=159.88 Aligned_cols=258 Identities=12% Similarity=-0.060 Sum_probs=184.5
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 048321 312 SWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYS 391 (641)
Q Consensus 312 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 391 (641)
.|..+...+...|++++|..+|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+..++..+...|.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 34445555555555555555555555432 1234444455555555555555555555555543 334555556666666
Q ss_pred hcCCHHHHHHHHhhCCC---CChhHHHHH--------------HH-HHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHH
Q 048321 392 KCGSIGDARELFYALPE---KIVVSWTTM--------------IA-GCALNGEFVEALDLFHQLMELDLRPNRVTFLAVL 453 (641)
Q Consensus 392 ~~g~~~~A~~~~~~~~~---~~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 453 (641)
..|++++|.+.|+++.. .+...+..+ .. .+...|++++|+..++++.+.. +.+..++..+.
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 179 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLG 179 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 66666666666655433 112222222 22 3667789999999999999863 33556888888
Q ss_pred HHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCC
Q 048321 454 QACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLN 531 (641)
Q Consensus 454 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~ 531 (641)
..+...|++++|...++.+.+..+ .+...+..++..+.+.|++++|...++++. .+.+..+|..+...+...|+
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVELRP----DDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhccHHHHHHHHHHHHHhCC----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcc
Confidence 899999999999999999986433 457889999999999999999999999976 34467789999999999999
Q ss_pred HHHHHHHHHHhHccCCC------------CCccHHHHHHHHHhcCCchHHHHHHHHH
Q 048321 532 IEIGEYVAYCLFKLEPH------------SAAPYVEMANKYALGGRWDGVANIRTMM 576 (641)
Q Consensus 532 ~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~eA~~~~~~m 576 (641)
+++|...+++++++.|+ ++..+..++.+|...|++++|.+++++.
T Consensus 256 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99999999999999998 6788999999999999999999987643
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-16 Score=153.88 Aligned_cols=246 Identities=8% Similarity=-0.052 Sum_probs=202.5
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCCCH--HHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 048321 317 ISGYAQKGDLDEALRLFFAMEAAGELPDL--VTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCG 394 (641)
Q Consensus 317 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 394 (641)
|.-....|++..|+..+++... ..|+. .....+..++...|+++.|...++. .-+|+..++..+...|...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 3456678999999999887643 34544 3445667889999999999875543 23667888899999999999
Q ss_pred CHHHHHHHHhhCC----CC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHH
Q 048321 395 SIGDARELFYALP----EK-IVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAIS 469 (641)
Q Consensus 395 ~~~~A~~~~~~~~----~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 469 (641)
+.++|.+.++++. .| +...+..+...+...|++++|++.+++ +.+...+..+...+.+.|++++|.+.|
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999863 24 566778888999999999999999987 345668888889999999999999999
Q ss_pred HHHHhhhCCCCCCChh---HHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHc
Q 048321 470 IIQYDDKGISYNPELD---HYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFK 544 (641)
Q Consensus 470 ~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 544 (641)
+.+.+. .|+.. ...+++..+...|++++|..+|+++. .+.++..|+.+..++...|++++|+..++++++
T Consensus 154 ~~~~~~-----~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~ 228 (291)
T 3mkr_A 154 KKMQDQ-----DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALD 228 (291)
T ss_dssp HHHHHH-----CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhh-----CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999863 35532 12344566667799999999999987 566788999999999999999999999999999
Q ss_pred cCCCCCccHHHHHHHHHhcCCchH-HHHHHHHHHhC
Q 048321 545 LEPHSAAPYVEMANKYALGGRWDG-VANIRTMMKRN 579 (641)
Q Consensus 545 ~~p~~~~~~~~l~~~~~~~g~~~e-A~~~~~~m~~~ 579 (641)
++|+++.++..++.++...|++++ +.++++++.+.
T Consensus 229 ~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 229 KDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999987 56888888764
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.73 E-value=8.3e-17 Score=161.38 Aligned_cols=230 Identities=10% Similarity=-0.005 Sum_probs=196.7
Q ss_pred HHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHH
Q 048321 345 LVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGC 421 (641)
Q Consensus 345 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 421 (641)
...+..+...+.+.|++++|..+++.+++.. +.+..++..+..+|.+.|++++|...|+++.+ .+..+|..+...|
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSY 143 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3457777888899999999999999999876 56788999999999999999999999998764 4678999999999
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCChh-h----------HHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHH
Q 048321 422 ALNGEFVEALDLFHQLMELDLRPNRV-T----------FLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCM 490 (641)
Q Consensus 422 ~~~g~~~~A~~~~~~m~~~g~~p~~~-t----------~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l 490 (641)
...|++++|+..|+++.+. .|+.. . +..+...+...|++++|...|+.+.+..+ -.++...+..+
T Consensus 144 ~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~~~l 219 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNG--DMIDPDLQTGL 219 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSC--SSCCHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCc--CccCHHHHHHH
Confidence 9999999999999999985 34432 2 23346788999999999999999997554 22368899999
Q ss_pred HHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchH
Q 048321 491 ADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDG 568 (641)
Q Consensus 491 ~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~e 568 (641)
+.+|.+.|++++|++.++++. .+.+..+|..+...|...|++++|+..+++++++.|+++..+..++.+|...|++++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 999999999999999999976 445678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhC
Q 048321 569 VANIRTMMKRN 579 (641)
Q Consensus 569 A~~~~~~m~~~ 579 (641)
|.+.++++.+.
T Consensus 300 A~~~~~~al~~ 310 (365)
T 4eqf_A 300 AVSNFLTALSL 310 (365)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998764
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.9e-15 Score=157.17 Aligned_cols=384 Identities=9% Similarity=-0.040 Sum_probs=237.7
Q ss_pred ChhhHHHHHHHHhccCChhHHHHHHHHHHHH-----c--CCC-ChhHHHHHHHHhHcCCChhHHHHHHhcccCC------
Q 048321 140 DFVTVMGLTQAAIHAKHLSLLKSVHSFGIHI-----G--VDA-DVSVCNTWISSYAKCDDLKMAELVFCGIEER------ 205 (641)
Q Consensus 140 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~--~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~------ 205 (641)
....|+.+-..+...|+.++|.+.+++.++. + ..| ...+|+.+..+|...|++++|...|++....
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3456889999999999999999999988763 1 122 3567889999999999999999998876432
Q ss_pred ---CCCchhHHHHHHHHhc--CCCchHHHHHHHHHHHCCCCCChh-hHHHHHHH---hcCCCchHHHHHHHHHHHHhCCC
Q 048321 206 ---LRTVVSWNSMVAGCTY--GDKFDDSLNFYRHMMYNGFRLDVT-TVVSLLSS---FVCPEALVQGRLVHSHGIHYGFD 276 (641)
Q Consensus 206 ---~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~---~~~~~~~~~a~~~~~~~~~~g~~ 276 (641)
.....+++.+..++.. .+++++|++.|++..+. .|+.. .+..+..+ +...++.++|.+.+...++.. +
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p 206 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-P 206 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-S
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-C
Confidence 1224456655555544 45799999999999875 35543 33333333 445677888999999888875 4
Q ss_pred CchhHHHHHHHHHHh----cCCHHHHHHHHhcC---CCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-HHHH
Q 048321 277 LDVSVINTLISMYSK----CGDIDSARVLFDGI---CDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPD-LVTV 348 (641)
Q Consensus 277 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~ 348 (641)
.+..++..+...+.. .|++++|.+.+++. .+.+..++..+...|...|++++|...|++..+. .|+ ..++
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~ 284 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLH 284 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHH
Confidence 456666666555544 46778899988865 4456678889999999999999999999998875 344 3444
Q ss_pred HHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcC
Q 048321 349 LSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGCALNG 425 (641)
Q Consensus 349 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g 425 (641)
..+...+...+.. ..... ...........+..+.|...|+.... .+..+|..+...+...|
T Consensus 285 ~~lg~~y~~~~~~---------~~~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~ 348 (472)
T 4g1t_A 285 CQIGCCYRAKVFQ---------VMNLR-------ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALAD 348 (472)
T ss_dssp HHHHHHHHHHHHH---------HHHC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHH---------hhhHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhc
Confidence 4444333211100 00000 00011111122345677777766543 45678889999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCChh--hHHHHHH-HHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHH
Q 048321 426 EFVEALDLFHQLMELDLRPNRV--TFLAVLQ-ACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKE 502 (641)
Q Consensus 426 ~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~-~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 502 (641)
++++|+..|++..+....|... .+..+.. .....|+.++|+..|++..+ +.|+........ +.
T Consensus 349 ~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~-----i~~~~~~~~~~~---------~~ 414 (472)
T 4g1t_A 349 QYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK-----INQKSREKEKMK---------DK 414 (472)
T ss_dssp CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH-----SCCCCHHHHHHH---------HH
T ss_pred cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-----cCcccHHHHHHH---------HH
Confidence 9999999999999864333221 2333332 34578999999999999886 556644333222 23
Q ss_pred HHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHH
Q 048321 503 ALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMAN 558 (641)
Q Consensus 503 A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 558 (641)
+..+++... .+.++.+|..|...+...|++++|++.+++++++.|.+|.++.-+|+
T Consensus 415 l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G~ 472 (472)
T 4g1t_A 415 LQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNGE 472 (472)
T ss_dssp HHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-------------------------
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCCC
Confidence 334444432 34567799999999999999999999999999999998887776653
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.69 E-value=4.7e-15 Score=145.87 Aligned_cols=265 Identities=9% Similarity=-0.055 Sum_probs=144.5
Q ss_pred chhHHHHHHHHhcCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 048321 209 VVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVVSLLSSFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISM 288 (641)
Q Consensus 209 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 288 (641)
...|..+...+...|++++|..+|+++.+... .+...+..+...+...|++++|...++.+.+..
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------------- 85 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-------------- 85 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------------
Confidence 44556666666677777777777776655321 133333444444444444444444444444432
Q ss_pred HHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH-HH-------------HHH-HH
Q 048321 289 YSKCGDIDSARVLFDGICDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLV-TV-------------LSM-IS 353 (641)
Q Consensus 289 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-t~-------------~~l-l~ 353 (641)
+.+..+|..+...|...|++++|...|+++.... |+.. .+ ..+ ..
T Consensus 86 ------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (327)
T 3cv0_A 86 ------------------PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSED 145 (327)
T ss_dssp ------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTTTC--------------------
T ss_pred ------------------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHh
Confidence 2233445555555555555555555555555432 1111 11 111 11
Q ss_pred -HhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHH
Q 048321 354 -GCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVE 429 (641)
Q Consensus 354 -~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 429 (641)
.+...|++++|..+++.+.+.. +.+..++..+...|.+.|++++|...|+++.+ .+..+|..+...+...|++++
T Consensus 146 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 224 (327)
T 3cv0_A 146 FFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQE 224 (327)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Confidence 2566677777777777777654 34556666677777777777777776666543 345566666666666777777
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCC--------ChhHHHHHHHHhhccCChH
Q 048321 430 ALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNP--------ELDHYSCMADLLGRKGKLK 501 (641)
Q Consensus 430 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p--------~~~~~~~l~~~~~~~g~~~ 501 (641)
|+..|+++.+.. +.+..++..+...+...|++++|.+.|+.+.+..+....+ +...|..+..++.+.|+++
T Consensus 225 A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 303 (327)
T 3cv0_A 225 ALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPD 303 (327)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHH
Confidence 777776666642 2233456666666666667777766666666433200000 2445555556666666666
Q ss_pred HHHHHHHhC
Q 048321 502 EALDFVQSM 510 (641)
Q Consensus 502 ~A~~~~~~~ 510 (641)
+|..++++.
T Consensus 304 ~A~~~~~~~ 312 (327)
T 3cv0_A 304 LVELTYAQN 312 (327)
T ss_dssp HHHHHTTCC
T ss_pred HHHHHHHHH
Confidence 666555543
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.3e-17 Score=174.59 Aligned_cols=150 Identities=12% Similarity=0.086 Sum_probs=126.0
Q ss_pred ChhHHHHHHHHhHcCCChhHHHHHHhcccCC-----CCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCCCCChhhHHH
Q 048321 175 DVSVCNTWISSYAKCDDLKMAELVFCGIEER-----LRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVVS 249 (641)
Q Consensus 175 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 249 (641)
-..+||+||++||++|++++|.++|++|.+. .||+++||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 4568999999999999999999999876532 68999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCch-HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC-----CcchHHHHHHHHHhC
Q 048321 250 LLSSFVCPEAL-VQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGICDR-----TRVSWTAMISGYAQK 323 (641)
Q Consensus 250 ll~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~ 323 (641)
+|.++++.|+. +.|.+++++|.+.|+.||..+|++++..+.+.+-++...+++..+..+ .+.+.+.|.+.|.+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d 285 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKD 285 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccC
Confidence 99999999875 789999999999999999999999998888876666666665555321 233445566666665
Q ss_pred C
Q 048321 324 G 324 (641)
Q Consensus 324 g 324 (641)
+
T Consensus 286 ~ 286 (1134)
T 3spa_A 286 G 286 (1134)
T ss_dssp S
T ss_pred C
Confidence 5
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.6e-15 Score=139.36 Aligned_cols=193 Identities=12% Similarity=-0.026 Sum_probs=157.8
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh-hhHHHH
Q 048321 377 KDNVMVCNALIDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNR-VTFLAV 452 (641)
Q Consensus 377 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~l 452 (641)
+++...+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++..+. .|+. ..+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 56677888889999999999999999998765 46778999999999999999999999999986 5654 477788
Q ss_pred HHHHhcc-----------CChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHH
Q 048321 453 LQACTHT-----------GFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIW 519 (641)
Q Consensus 453 l~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~ 519 (641)
..++... |++++|...|+...+..+ .+...+..+..+|...|++++|+..|++.. . .++..|
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~ 154 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP----RYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIR 154 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc----ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHH
Confidence 8888899 999999999999996433 347788999999999999999999999976 5 778899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHH
Q 048321 520 GTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMM 576 (641)
Q Consensus 520 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m 576 (641)
..+...+...|++++|+..++++++++|+++..+..++.+|...|++++|.+.+++.
T Consensus 155 ~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 155 SALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988754
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.65 E-value=5.8e-15 Score=139.71 Aligned_cols=214 Identities=9% Similarity=-0.017 Sum_probs=159.2
Q ss_pred HHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C----C----hhHHHHHHHH
Q 048321 351 MISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE--K----I----VVSWTTMIAG 420 (641)
Q Consensus 351 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~----~----~~~~~~li~~ 420 (641)
+...+...|++++|..+++.+.+.. .+..++..+..+|...|++++|...|+.... | + ..+|..+...
T Consensus 11 ~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 88 (258)
T 3uq3_A 11 EGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNA 88 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHH
Confidence 3333444444444444444444433 3444555555555555555555555555433 1 1 4677888888
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCCh
Q 048321 421 CALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKL 500 (641)
Q Consensus 421 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 500 (641)
+...|++++|+..|+++.+. .|+. ..+...|++++|...++.+....+ .+...+..++..+.+.|++
T Consensus 89 ~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 89 YHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVNP----EKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCCH----HHHHHHHHHHHHHHHTTCH
T ss_pred HHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcCc----chHHHHHHHHHHHHHhcCH
Confidence 88889999999999988885 4553 345666888999999998885322 3466788889999999999
Q ss_pred HHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048321 501 KEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 501 ~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
++|+..++++. .+.+..+|..+...+...|++++|+..++++++..|+++..|..++.+|...|++++|.+.+++..+
T Consensus 156 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 156 PNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999876 4456778999999999999999999999999999999999999999999999999999999988776
Q ss_pred C
Q 048321 579 N 579 (641)
Q Consensus 579 ~ 579 (641)
.
T Consensus 236 ~ 236 (258)
T 3uq3_A 236 K 236 (258)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.2e-16 Score=169.02 Aligned_cols=127 Identities=13% Similarity=0.070 Sum_probs=100.1
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhhCC-------CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhH
Q 048321 377 KDNVMVCNALIDMYSKCGSIGDARELFYALP-------EKIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTF 449 (641)
Q Consensus 377 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 449 (641)
..-..+||+||++|+++|++++|.++|++|. .||++|||+||.+|++.|++++|.++|++|.+.|+.||.+||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 3445678888888888888888888886653 478888888888888888888888888888888888888888
Q ss_pred HHHHHHHhccCCh-HHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHH
Q 048321 450 LAVLQACTHTGFL-EKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDF 506 (641)
Q Consensus 450 ~~ll~~~~~~g~~-~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 506 (641)
+++|.++++.|.. ++|.++|++|. ..| +.||..+|++++....|.+-++...++
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~-~kG--~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMS-QEG--LKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHH-HHT--CCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHH-HcC--CCCChhhcccccChhhHHHHHHHHHHh
Confidence 8888888888874 67888888888 567 888888888887766665444443333
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=2.6e-14 Score=136.71 Aligned_cols=242 Identities=11% Similarity=-0.091 Sum_probs=191.2
Q ss_pred HhCCChhHHHHHHHHHHHcCCC--C-CHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHH
Q 048321 321 AQKGDLDEALRLFFAMEAAGEL--P-DLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIG 397 (641)
Q Consensus 321 ~~~g~~~~A~~~~~~m~~~~~~--p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 397 (641)
...|++++|+..|+++.+.... | +..++..+...+...|++++|...++.+.+.. +.+..++..+...|...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 3457788888888888775321 1 34567777778888888999988888888765 456788888999999999999
Q ss_pred HHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHh
Q 048321 398 DARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYD 474 (641)
Q Consensus 398 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 474 (641)
+|.+.|++... .+..+|..+...|...|++++|+..|+++.+. .|+.......+..+...|++++|...++....
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 99999988765 46788999999999999999999999999986 57666555566666778999999999988886
Q ss_pred hhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCCC-----hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCC
Q 048321 475 DKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKSD-----AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPH 548 (641)
Q Consensus 475 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 548 (641)
..+ ++...+. ++..+...++.++|++.+++.. ..|+ ..+|..+...+...|++++|...++++++++|+
T Consensus 173 ~~~----~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 247 (275)
T 1xnf_A 173 KSD----KEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH 247 (275)
T ss_dssp HSC----CCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT
T ss_pred cCC----cchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCch
Confidence 543 4444444 7777888888999999998866 3332 568888999999999999999999999999997
Q ss_pred CCccHHHHHHHHHhcCCchHHHHHH
Q 048321 549 SAAPYVEMANKYALGGRWDGVANIR 573 (641)
Q Consensus 549 ~~~~~~~l~~~~~~~g~~~eA~~~~ 573 (641)
+. ...+.++...|++++|.+.+
T Consensus 248 ~~---~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 248 NF---VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp TC---HHHHHHHHHHHHHHHC----
T ss_pred hH---HHHHHHHHHHHHHHhhHHHH
Confidence 64 34477888999999998765
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.62 E-value=9.4e-15 Score=138.26 Aligned_cols=232 Identities=10% Similarity=-0.064 Sum_probs=168.7
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCC--CCc----hhHHHH
Q 048321 312 SWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGL--KDN----VMVCNA 385 (641)
Q Consensus 312 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~ 385 (641)
.|..+...+...|++++|+..|++..+.. .+...+..+...+...|++++|...+..+.+... .++ ..++..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 45555666666666666666666666654 5555666666666666666666666666655321 111 466777
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHhccCCh
Q 048321 386 LIDMYSKCGSIGDARELFYALPE--KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNR-VTFLAVLQACTHTGFL 462 (641)
Q Consensus 386 li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~ 462 (641)
+...|.+.|++++|...|++... ++ ...+...|++++|+..++++... .|+. ..+..+...+...|++
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEHRT-------ADILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCch-------hHHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhcCH
Confidence 77788888888888888877654 33 23456678889999999988875 4544 4677777788899999
Q ss_pred HHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHH
Q 048321 463 EKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAY 540 (641)
Q Consensus 463 ~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 540 (641)
++|...|+.+.+..+ .+...+..++.+|.+.|++++|+..++++. .+.+...|..+...+...|++++|...++
T Consensus 156 ~~A~~~~~~a~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 156 PNAVKAYTEMIKRAP----EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp HHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCc----ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 999999999886443 457788889999999999999999998876 44457788889999999999999999999
Q ss_pred HhHccC------CCCCccHHHHHH
Q 048321 541 CLFKLE------PHSAAPYVEMAN 558 (641)
Q Consensus 541 ~~~~~~------p~~~~~~~~l~~ 558 (641)
+++++. |++...+..+..
T Consensus 232 ~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 232 AARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHhChhhcCCCchHHHHHHHHH
Confidence 999988 776555555443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.58 E-value=4.5e-14 Score=134.89 Aligned_cols=244 Identities=9% Similarity=-0.082 Sum_probs=129.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcC---CCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHhc
Q 048321 282 INTLISMYSKCGDIDSARVLFDGI---CDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPD--LVTVLSMISGCG 356 (641)
Q Consensus 282 ~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~t~~~ll~~~~ 356 (641)
+......+...|++++|+..|++. .+.+...|..+...|...|++++|+..|++..+....|+ ...+..+...+.
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 444556666666777776666655 223444666666666666666666666666665321111 123444555555
Q ss_pred CcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHH
Q 048321 357 QSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDL 433 (641)
Q Consensus 357 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 433 (641)
..|++++|...++.+.+.. +.+..++..+...|...|++++|...|++..+ .+...|..+..
T Consensus 86 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~-------------- 150 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQ-------------- 150 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHH--------------
T ss_pred HcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHH--------------
Confidence 5555555555555555533 22334444455555555555555555544443 12333333331
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCC---hHHHHHHHHhC
Q 048321 434 FHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGK---LKEALDFVQSM 510 (641)
Q Consensus 434 ~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~ 510 (641)
.+...+++++|...|+.+.+..+ .+...+..+..++...|+ +++|...++++
T Consensus 151 ---------------------~~~~~~~~~~A~~~~~~a~~~~p----~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 205 (272)
T 3u4t_A 151 ---------------------AYYYNKEYVKADSSFVKVLELKP----NIYIGYLWRARANAAQDPDTKQGLAKPYYEKL 205 (272)
T ss_dssp ---------------------HHHHTTCHHHHHHHHHHHHHHST----TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHH
T ss_pred ---------------------HHHHHHHHHHHHHHHHHHHHhCc----cchHHHHHHHHHHHHcCcchhhHHHHHHHHHH
Confidence 22223345555555555443211 223344444444444444 44444444443
Q ss_pred C----CCCC------hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCC
Q 048321 511 P----IKSD------AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGR 565 (641)
Q Consensus 511 ~----~~p~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 565 (641)
. ..|+ ..+|..+...+...|++++|...++++++++|+++.++..+..+....+.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~ 270 (272)
T 3u4t_A 206 IEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHHH 270 (272)
T ss_dssp HHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC--------
T ss_pred HHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhccccc
Confidence 2 1122 13667788888899999999999999999999988888777776665543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.56 E-value=1.7e-13 Score=129.20 Aligned_cols=196 Identities=9% Similarity=-0.076 Sum_probs=159.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 048321 380 VMVCNALIDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQAC 456 (641)
Q Consensus 380 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 456 (641)
...+..+...|...|++++|...|+++.+ .+...|..+...+...|++++|++.|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 45677777888888888888888887653 356788888888888999999999999888763 23455777778888
Q ss_pred hccCChHHHHHHHHHHHhhhCCCCCC-ChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHH
Q 048321 457 THTGFLEKGWAISIIQYDDKGISYNP-ELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIE 533 (641)
Q Consensus 457 ~~~g~~~~a~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~ 533 (641)
...|++++|..+|+.+.+ .+ ..| +...+..++..|.+.|++++|.+.++++. .+.+...+..+...+...|+++
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DT--LYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CT--TCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHhHHHHHHHHHHHHHh-Cc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHH
Confidence 889999999999988875 22 334 46678888888999999999999998865 3345778888888899999999
Q ss_pred HHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 534 IGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 534 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
+|...++++++..|+++..+..++.+|...|++++|.+.++++.+.
T Consensus 193 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 193 PARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 9999999999999988888999999999999999999999888764
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=5.8e-14 Score=131.53 Aligned_cols=172 Identities=11% Similarity=0.040 Sum_probs=79.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHh
Q 048321 381 MVCNALIDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACT 457 (641)
Q Consensus 381 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 457 (641)
.++..+...|.+.|++++|...|+++.+ .+..+|..+...+...|++++|++.|+++.+.. +.+...+..+...+.
T Consensus 58 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 136 (243)
T 2q7f_A 58 IPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLV 136 (243)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 3333444444444444444444443322 233444444455555555555555555554431 122334444444555
Q ss_pred ccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHH
Q 048321 458 HTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIG 535 (641)
Q Consensus 458 ~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a 535 (641)
..|++++|...++.+.+..+ .+...+..++..+.+.|++++|+..++++. .+.+..+|..+...+...|++++|
T Consensus 137 ~~~~~~~A~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 212 (243)
T 2q7f_A 137 KLEQPKLALPYLQRAVELNE----NDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKA 212 (243)
T ss_dssp HTSCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHH
T ss_pred HhccHHHHHHHHHHHHHhCC----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHH
Confidence 55555555555555543221 234444445555555555555555554433 222344455555555555555555
Q ss_pred HHHHHHhHccCCCCCccHHHHH
Q 048321 536 EYVAYCLFKLEPHSAAPYVEMA 557 (641)
Q Consensus 536 ~~~~~~~~~~~p~~~~~~~~l~ 557 (641)
...++++++++|+++..+..++
T Consensus 213 ~~~~~~~~~~~p~~~~~~~~~~ 234 (243)
T 2q7f_A 213 LEMLDKAIDIQPDHMLALHAKK 234 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHT
T ss_pred HHHHHHHHccCcchHHHHHHHH
Confidence 5555555555555444444433
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=8.1e-14 Score=130.51 Aligned_cols=197 Identities=12% Similarity=0.068 Sum_probs=156.2
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 048321 378 DNVMVCNALIDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQ 454 (641)
Q Consensus 378 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 454 (641)
.....+..+...+...|++++|...|+++.+ .+...|..+...+...|++++|+..|+++.+.. +.+..++..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 3455677778888899999999999988754 467889999999999999999999999999863 334568888888
Q ss_pred HHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCH
Q 048321 455 ACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNI 532 (641)
Q Consensus 455 ~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~ 532 (641)
.+...|++++|.+.++.+.+..+ .+...+..++..+.+.|++++|...++++. .+.+...+..+...+...|++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 175 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAGM----ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGML 175 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTC----CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHhccHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCH
Confidence 99999999999999999986543 567889999999999999999999999976 445677899999999999999
Q ss_pred HHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 533 EIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 533 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
++|+..++++++..|+++..+..++.+|...|++++|.+.++++.+.
T Consensus 176 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 176 DEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999999999998764
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.4e-13 Score=124.43 Aligned_cols=198 Identities=9% Similarity=-0.087 Sum_probs=157.6
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 048321 378 DNVMVCNALIDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQ 454 (641)
Q Consensus 378 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 454 (641)
.+..++..+...|...|++++|...|+.+.+ .+...|..+...+...|++++|++.|+++.+.. +.+..++..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 3456677778888888888888888877653 356678888888888899999999998888762 234557777788
Q ss_pred HHhcc-CChHHHHHHHHHHHhhhCCCCCCC-hhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcC
Q 048321 455 ACTHT-GFLEKGWAISIIQYDDKGISYNPE-LDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHL 530 (641)
Q Consensus 455 ~~~~~-g~~~~a~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g 530 (641)
.+... |++++|...++.+.+ .+ ..|+ ...+..++..+.+.|++++|+..++++. .+.+...|..+...+...|
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~-~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 161 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALA-DP--TYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAG 161 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHT-ST--TCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHT
T ss_pred HHHHhcCcHHHHHHHHHHHHc-Cc--CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcC
Confidence 88888 999999999988885 32 2333 6678888888889999999999888865 3345678888888888999
Q ss_pred CHHHHHHHHHHhHccCC-CCCccHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 531 NIEIGEYVAYCLFKLEP-HSAAPYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 531 ~~~~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
++++|...++++++..| +++..+..++.++...|+.++|..+++.+...
T Consensus 162 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 162 QLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp CHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 99999999999999988 88888888888889999999999988887653
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.54 E-value=3.8e-13 Score=133.80 Aligned_cols=245 Identities=8% Similarity=-0.022 Sum_probs=192.3
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCc-hHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 048321 311 VSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGA-LELGKWFDNYACSGGLKDNVMVCNALIDM 389 (641)
Q Consensus 311 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 389 (641)
..|+.+...+.+.|++++|+..|++.+... +-+...|..+...+...|+ +++|...++.+++.. +.+..+|..+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 356777777888888888888888887753 2235566777777777785 888888888888765 5567788888888
Q ss_pred HHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHhc-cCChHH
Q 048321 390 YSKCGSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPN-RVTFLAVLQACTH-TGFLEK 464 (641)
Q Consensus 390 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~-~g~~~~ 464 (641)
|.+.|++++|...|+++.. .+...|..+..++...|++++|+..|+++++. .|+ ...|+.+..++.. .|..++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcchH
Confidence 8899999999999988765 46788999999999999999999999999986 554 4578888888888 666577
Q ss_pred H-----HHHHHHHHhhhCCCCCCChhHHHHHHHHhhccC--ChHHHHHHHHhCCCCC-ChhHHHHHHHHHHHcC------
Q 048321 465 G-----WAISIIQYDDKGISYNPELDHYSCMADLLGRKG--KLKEALDFVQSMPIKS-DAGIWGTLLCACKIHL------ 530 (641)
Q Consensus 465 a-----~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~g------ 530 (641)
| +..|+.+++..+ -+...|..+..+|.+.| ++++|++.+.++...| +...+..+...+...|
T Consensus 254 A~~~~el~~~~~Al~l~P----~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLVP----HNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHST----TCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccc
Confidence 7 588888886332 34678888889999888 6899999998875444 4567788888887764
Q ss_pred ---CHHHHHHHHHHh-HccCCCCCccHHHHHHHHHhc
Q 048321 531 ---NIEIGEYVAYCL-FKLEPHSAAPYVEMANKYALG 563 (641)
Q Consensus 531 ---~~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 563 (641)
..++|+.+++++ .+++|.....|..++..+...
T Consensus 330 ~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 258999999999 999999888888887776654
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.54 E-value=2.4e-13 Score=135.22 Aligned_cols=225 Identities=8% Similarity=-0.033 Sum_probs=192.6
Q ss_pred HHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC-HHHHHHHHhhCCC---CChhHHHHHHHHH
Q 048321 346 VTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGS-IGDARELFYALPE---KIVVSWTTMIAGC 421 (641)
Q Consensus 346 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~li~~~ 421 (641)
..|..+...+...|++++|...++.+++.. +.+..+|+.+..+|.+.|+ +++|+..|+++.. .+...|+.+...+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 345666667788899999999999999876 5678899999999999997 9999999998875 4678999999999
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhc-cCC
Q 048321 422 ALNGEFVEALDLFHQLMELDLRPN-RVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGR-KGK 499 (641)
Q Consensus 422 ~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~ 499 (641)
...|++++|+..|+++++. .|+ ...|..+..++...|++++|+..|+.+++..+ -+...|+.+..+|.+ .|.
T Consensus 177 ~~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P----~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV----RNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCS
T ss_pred HHccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHhcCc
Confidence 9999999999999999986 565 45888888899999999999999999997433 457889999999999 666
Q ss_pred hHHH-----HHHHHhCC-CCC-ChhHHHHHHHHHHHcC--CHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcC------
Q 048321 500 LKEA-----LDFVQSMP-IKS-DAGIWGTLLCACKIHL--NIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGG------ 564 (641)
Q Consensus 500 ~~~A-----~~~~~~~~-~~p-~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------ 564 (641)
.++| ++.|++.. ..| +...|..+...+...| ++++|+..++++ +.+|+++..+..++++|.+.|
T Consensus 251 ~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred chHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccc
Confidence 6888 47777765 444 6779999999998888 689999999998 999999999999999999985
Q ss_pred --C-chHHHHHHHHH-Hh
Q 048321 565 --R-WDGVANIRTMM-KR 578 (641)
Q Consensus 565 --~-~~eA~~~~~~m-~~ 578 (641)
+ +++|.++++++ .+
T Consensus 330 ~~~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 330 KEDILNKALELCEILAKE 347 (382)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 3 58999999988 44
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.53 E-value=5.1e-13 Score=125.90 Aligned_cols=204 Identities=14% Similarity=0.005 Sum_probs=136.5
Q ss_pred cchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 048321 310 RVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDM 389 (641)
Q Consensus 310 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 389 (641)
...|..+...+...|++++|...|+++.+.. +.+..++..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~------------------------------------~~~~~~~~~la~~ 80 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID------------------------------------PSSADAHAALAVV 80 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC------------------------------------TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC------------------------------------CChHHHHHHHHHH
Confidence 3456666666777777777777777665542 2233344445555
Q ss_pred HHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHhccCChHHH
Q 048321 390 YSKCGSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNR-VTFLAVLQACTHTGFLEKG 465 (641)
Q Consensus 390 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a 465 (641)
|...|++++|.+.|+++.+ .+...|..+...|...|++++|++.|+++...+..|+. ..+..+...+...|++++|
T Consensus 81 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 160 (252)
T 2ho1_A 81 FQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQA 160 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHH
Confidence 5555555555555554432 24456666667777777777777777777663334543 3566666677778888888
Q ss_pred HHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 048321 466 WAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLF 543 (641)
Q Consensus 466 ~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 543 (641)
...|+.+.+..+ .+...+..++..|.+.|++++|...++++. .+.+...+..+...+...|+.++|...++++.
T Consensus 161 ~~~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 236 (252)
T 2ho1_A 161 KEYFEKSLRLNR----NQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLK 236 (252)
T ss_dssp HHHHHHHHHHCS----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCc----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 888887775332 346677778888888888888888888764 33456677778888888999999999999999
Q ss_pred ccCCCCCccH
Q 048321 544 KLEPHSAAPY 553 (641)
Q Consensus 544 ~~~p~~~~~~ 553 (641)
++.|+++...
T Consensus 237 ~~~p~~~~~~ 246 (252)
T 2ho1_A 237 RLYPGSLEYQ 246 (252)
T ss_dssp HHCTTSHHHH
T ss_pred HHCCCCHHHH
Confidence 9988865443
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.53 E-value=1e-12 Score=134.86 Aligned_cols=369 Identities=11% Similarity=0.009 Sum_probs=185.4
Q ss_pred HHHHhccCChhHHHHHHHHHHHHcCCCChhHHHHHHHHhHcCCCh---hHHHHHHhcccCCCCCchhHHHHHHHHhcCC-
Q 048321 148 TQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISSYAKCDDL---KMAELVFCGIEERLRTVVSWNSMVAGCTYGD- 223 (641)
Q Consensus 148 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g- 223 (641)
...+.+.|++++|.+++....+.| +...+..|..+|...|+. ++|...|++..+ .++..+..+...+...+
T Consensus 10 a~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~--~~~~A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 10 ANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAAD--TSPRAQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC------------------------------CHHHHHHHHHTC--
T ss_pred HHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHh--CCHHHHHHHHHHHHhCCC
Confidence 344455566667777776666655 233344455555666666 778888877776 36666666666555554
Q ss_pred ----CchHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCch---HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC---
Q 048321 224 ----KFDDSLNFYRHMMYNGFRLDVTTVVSLLSSFVCPEAL---VQGRLVHSHGIHYGFDLDVSVINTLISMYSKCG--- 293 (641)
Q Consensus 224 ----~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g--- 293 (641)
++++|+..|++..+.|... .+..+...+...+.. ..+.+.+......| ++.....|...|...+
T Consensus 85 ~~~~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGG
T ss_pred CCCcCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcc
Confidence 5678888888887765422 444444444433332 23444444444444 3455666667777666
Q ss_pred -CHHHHHHHHhcCCCCCcchHHHHHHHHHhCC---ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCc----CchHHHH
Q 048321 294 -DIDSARVLFDGICDRTRVSWTAMISGYAQKG---DLDEALRLFFAMEAAGELPDLVTVLSMISGCGQS----GALELGK 365 (641)
Q Consensus 294 -~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~----~~~~~a~ 365 (641)
..+.+..+++.....++.++..|...|...| +.++|+..|++..+.|. ++...+..+...|... ++.++|.
T Consensus 159 ~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A~ 237 (452)
T 3e4b_A 159 QHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEKTAQ 237 (452)
T ss_dssp GGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred cCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 3444455555555555567777777777777 66777777776666552 3333333333333332 3555555
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHH-H--HHcCChHHHHHHHHHHHHcCC
Q 048321 366 WFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKIVVSWTTMIAG-C--ALNGEFVEALDLFHQLMELDL 442 (641)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~g~ 442 (641)
.+++... .| +...+..+... + ...+++++|++.|++..+.|
T Consensus 238 ~~~~~aa-~g----------------------------------~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g- 281 (452)
T 3e4b_A 238 ALLEKIA-PG----------------------------------YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD- 281 (452)
T ss_dssp HHHHHHG-GG----------------------------------STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT-
T ss_pred HHHHHHc-CC----------------------------------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC-
Confidence 5555544 21 23333333333 2 23556666666666666544
Q ss_pred CCChhhHHHHHHHHhccC-----ChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhc----cCChHHHHHHHHhCCCC
Q 048321 443 RPNRVTFLAVLQACTHTG-----FLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGR----KGKLKEALDFVQSMPIK 513 (641)
Q Consensus 443 ~p~~~t~~~ll~~~~~~g-----~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~ 513 (641)
+......+...|. .| ++++|...|+... . -+...+..|..+|.. ..++++|...|++....
T Consensus 282 --~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa--~-----g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 351 (452)
T 3e4b_A 282 --QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV--G-----REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN 351 (452)
T ss_dssp --CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT--T-----TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT
T ss_pred --CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh--C-----CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh
Confidence 3334444444444 33 6666666666554 1 234455555555544 23667777777665544
Q ss_pred CChhHHHHHHHHHHH----cCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHh--cCCchHHHHHHHHH
Q 048321 514 SDAGIWGTLLCACKI----HLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYAL--GGRWDGVANIRTMM 576 (641)
Q Consensus 514 p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--~g~~~eA~~~~~~m 576 (641)
.++.....|...|.. ..|.++|...++++.+..+. .....+..+... .++.++|.++.++-
T Consensus 352 g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~--~a~~~l~~l~~~~~~~~~~~a~~~~~~~ 418 (452)
T 3e4b_A 352 GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP--EANDLATQLEAPLTPAQRAEGQRLVQQE 418 (452)
T ss_dssp TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH--HHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH--HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 444555555555543 34777777777777776543 333344444322 33455666655543
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.52 E-value=6.5e-13 Score=118.45 Aligned_cols=165 Identities=12% Similarity=0.044 Sum_probs=140.9
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHH
Q 048321 410 IVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNR-VTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYS 488 (641)
Q Consensus 410 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~ 488 (641)
+...|..+...|...|++++|++.|++..+. .|+. .++..+..++...|++++|...+.......+ .+...+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~ 77 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT----TSAEAYY 77 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC----CCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc----hhHHHHH
Confidence 4567888888999999999999999999886 5654 4777888889999999999999998885433 4566777
Q ss_pred HHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCc
Q 048321 489 CMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRW 566 (641)
Q Consensus 489 ~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 566 (641)
.+...+...+++++|.+.+.+.. .+.+...+..+...+...|++++|+..++++++++|+++..|..++.+|.+.|++
T Consensus 78 ~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 78 ILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCH
Confidence 88888899999999999988866 4446778888999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhCC
Q 048321 567 DGVANIRTMMKRNQ 580 (641)
Q Consensus 567 ~eA~~~~~~m~~~~ 580 (641)
++|.+.+++..+..
T Consensus 158 ~~A~~~~~~al~~~ 171 (184)
T 3vtx_A 158 DEAVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCC
Confidence 99999999887653
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.52 E-value=8.1e-13 Score=121.89 Aligned_cols=201 Identities=11% Similarity=-0.070 Sum_probs=136.2
Q ss_pred HHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHc-CC
Q 048321 351 MISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGCALN-GE 426 (641)
Q Consensus 351 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~-g~ 426 (641)
+...+...|++++|...++.+.+.. +.+..++..+...|...|++++|.+.|+++.. .+..+|..+...+... |+
T Consensus 14 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 92 (225)
T 2vq2_A 14 LAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNR 92 (225)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCc
Confidence 3333344444444444444444332 22344555556666666666666666665432 3456677777778888 88
Q ss_pred hHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHH
Q 048321 427 FVEALDLFHQLMELDLRPNR-VTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALD 505 (641)
Q Consensus 427 ~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 505 (641)
+++|+..++++.+.+..|+. ..+..+...+...|++++|...|+.+.+..+ .+...+..++.++.+.|++++|..
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~la~~~~~~~~~~~A~~ 168 (225)
T 2vq2_A 93 PAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP----QFPPAFKELARTKMLAGQLGDADY 168 (225)
T ss_dssp HHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST----TCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CCchHHHHHHHHHHHcCCHHHHHH
Confidence 88888888888773334443 4667777788888888888888888875432 346778888888888889998888
Q ss_pred HHHhCC--CC-CChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHH
Q 048321 506 FVQSMP--IK-SDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEM 556 (641)
Q Consensus 506 ~~~~~~--~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 556 (641)
.++++. .+ .+...+..+...+...|+.+.+...++.+.+..|+++.....+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 169 YFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 888865 33 4566777777777889999999999999998899876555443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.52 E-value=3e-12 Score=122.06 Aligned_cols=227 Identities=12% Similarity=-0.056 Sum_probs=158.4
Q ss_pred hhhHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CCcc----hHHHHH
Q 048321 244 VTTVVSLLSSFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGICD--RTRV----SWTAMI 317 (641)
Q Consensus 244 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~----~~~~li 317 (641)
...+......+...|++++|...+..+++.. +.+..++..+..+|...|++++|...|++... ++.. +|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 4456667788889999999999999999875 45566888999999999999999999987733 2322 388999
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHH-HHHHhcCCH
Q 048321 318 SGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALI-DMYSKCGSI 396 (641)
Q Consensus 318 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li-~~~~~~g~~ 396 (641)
..|...|++++|+..|++..+.. +.+...+..+...+...|++++|...++...+.. +.+..++..+. ..|. .+++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~-~~~~ 158 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYY-NKEY 158 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHH-TTCH
T ss_pred HHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHH-HHHH
Confidence 99999999999999999998863 2345688888999999999999999999988764 45667777777 4444 3466
Q ss_pred HHHHHHHhhCCC---CChhHHHHHHHHHHHcCC---hHHHHHHHHHHHHcC-CCCCh------hhHHHHHHHHhccCChH
Q 048321 397 GDARELFYALPE---KIVVSWTTMIAGCALNGE---FVEALDLFHQLMELD-LRPNR------VTFLAVLQACTHTGFLE 463 (641)
Q Consensus 397 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g-~~p~~------~t~~~ll~~~~~~g~~~ 463 (641)
++|.+.|+++.+ .+...|..+...+...|+ +++|+..|+++.+.. -.|+. .++..+...|...|+++
T Consensus 159 ~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 159 VKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 666666665543 234455555555555555 555666655555421 11321 23334444444555555
Q ss_pred HHHHHHHHHHh
Q 048321 464 KGWAISIIQYD 474 (641)
Q Consensus 464 ~a~~~~~~~~~ 474 (641)
+|...|+.+.+
T Consensus 239 ~A~~~~~~al~ 249 (272)
T 3u4t_A 239 KADAAWKNILA 249 (272)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 55555555543
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.51 E-value=9.6e-11 Score=124.35 Aligned_cols=420 Identities=10% Similarity=0.046 Sum_probs=268.7
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCC---hhHHHHHHHHHHHHcC-CCChhHH
Q 048321 104 RDVASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKH---LSLLKSVHSFGIHIGV-DADVSVC 179 (641)
Q Consensus 104 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~-~~~~~~~ 179 (641)
.|..+|..+|..+.+.+.++.+..+|+.+... .+.....|..-+..-.+.+. .+.+.++|+..+.... +|++..|
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 47778888888888888888888888888775 34445556667777667777 8888888888877541 3677777
Q ss_pred HHHHHHhHcCCCh--------hHHHHHHhcccC-----CCCCchhHHHHHHHHhc---------CCCchHHHHHHHHHHH
Q 048321 180 NTWISSYAKCDDL--------KMAELVFCGIEE-----RLRTVVSWNSMVAGCTY---------GDKFDDSLNFYRHMMY 237 (641)
Q Consensus 180 ~~ll~~~~~~g~~--------~~A~~~~~~~~~-----~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~ 237 (641)
...+....+.++. +...++|+.... .+.+...|...+.-... .++.+.+..+|+..+.
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 7777655555443 233466665332 12234567776654432 2335566677777664
Q ss_pred CCCCCCh---hhHH---HHHHHhcCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc-------
Q 048321 238 NGFRLDV---TTVV---SLLSSFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDG------- 304 (641)
Q Consensus 238 ~g~~p~~---~t~~---~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~------- 304 (641)
+ |.. .+|. ..-... +...+..++.+. ..+++.|...+..
T Consensus 223 --i-P~~~~~~~w~~Y~~fe~~~----~~~~a~~~~~e~---------------------~~~y~~Ar~~~~e~~~~~~~ 274 (679)
T 4e6h_A 223 --Q-PMDCLESMWQRYTQWEQDV----NQLTARRHIGEL---------------------SAQYMNARSLYQDWLNITKG 274 (679)
T ss_dssp --S-CCSSHHHHHHHHHHHHHHH----CTTTHHHHHHHH---------------------HHHHHHHHHHHHHHHHHTTT
T ss_pred --C-ccHHHHHHHHHHHHHHHhc----CcchHHHHHHHh---------------------hHHHHHHHHHHHHHHHHHHh
Confidence 2 221 1111 111111 000011111110 0122223332221
Q ss_pred CCC--------------C--C------cchHHHHHHHHHhCC-------ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 048321 305 ICD--------------R--T------RVSWTAMISGYAQKG-------DLDEALRLFFAMEAAGELPDLVTVLSMISGC 355 (641)
Q Consensus 305 ~~~--------------~--~------~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~ 355 (641)
+.. | + ...|...+.---.++ ..+.+..+|++.+.. ..-+...|.....-+
T Consensus 275 l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~ 353 (679)
T 4e6h_A 275 LKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQ 353 (679)
T ss_dssp CCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHH
T ss_pred HhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHH
Confidence 110 0 0 123555554433332 123456678777765 233556666666666
Q ss_pred cCcCchHHHH-HHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC-------------C------------
Q 048321 356 GQSGALELGK-WFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE-------------K------------ 409 (641)
Q Consensus 356 ~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------------~------------ 409 (641)
...|+.+.|. .+++..+... +.+...+..++...-+.|+++.|.++|+.+.. |
T Consensus 354 ~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~ 432 (679)
T 4e6h_A 354 GEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSK 432 (679)
T ss_dssp HHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccc
Confidence 6778888886 9999998743 56777888899999999999999999998764 2
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHc-CCCCChhhHHHHHHHHhc-cCChHHHHHHHHHHHhhhCCCCCCChhHH
Q 048321 410 IVVSWTTMIAGCALNGEFVEALDLFHQLMEL-DLRPNRVTFLAVLQACTH-TGFLEKGWAISIIQYDDKGISYNPELDHY 487 (641)
Q Consensus 410 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~~~p~~~~~ 487 (641)
....|...+....+.|..+.|..+|.++++. + .+....|......-.+ .++.+.|+.+|+...+.++ -+...|
T Consensus 433 ~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p----~~~~~w 507 (679)
T 4e6h_A 433 LTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFA----TDGEYI 507 (679)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT----TCHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC----CchHHH
Confidence 1236888888888899999999999999885 2 1122333322222223 3569999999999998766 566678
Q ss_pred HHHHHHhhccCChHHHHHHHHhCC-CCC----ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHH
Q 048321 488 SCMADLLGRKGKLKEALDFVQSMP-IKS----DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKY 560 (641)
Q Consensus 488 ~~l~~~~~~~g~~~~A~~~~~~~~-~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 560 (641)
...++.....|+.+.|..+|++.. ..| ....|...+..-..+|+.+.+..+.+++.+..|+++ ....+++=|
T Consensus 508 ~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~-~~~~f~~ry 584 (679)
T 4e6h_A 508 NKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN-KLEEFTNKY 584 (679)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC-HHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc-HHHHHHHHh
Confidence 899999999999999999999976 333 345899999999999999999999999999999864 333344433
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.51 E-value=8.2e-13 Score=121.15 Aligned_cols=191 Identities=17% Similarity=0.030 Sum_probs=95.5
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 048321 312 SWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYS 391 (641)
Q Consensus 312 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 391 (641)
.|..+...+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|...++..++.. +.+...+..+..+|.
T Consensus 7 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~ 84 (217)
T 2pl2_A 7 NPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAYV 84 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 33444444444444444444444443321 1122333333344444444444444444444432 223344444444444
Q ss_pred hc-----------CCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHh
Q 048321 392 KC-----------GSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACT 457 (641)
Q Consensus 392 ~~-----------g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 457 (641)
+. |++++|...|++..+ .+...|..+...+...|++++|+..|++..+.. .+...+..+..++.
T Consensus 85 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~ 162 (217)
T 2pl2_A 85 ALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYL 162 (217)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
T ss_pred HhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHH
Confidence 44 666666666665543 244566666666777777777777777777654 45556666666777
Q ss_pred ccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhC
Q 048321 458 HTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSM 510 (641)
Q Consensus 458 ~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 510 (641)
..|++++|...|+.+.+..+ .+...+..+..++.+.|++++|+..+++.
T Consensus 163 ~~g~~~~A~~~~~~al~~~P----~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 163 SMGRLDEALAQYAKALEQAP----KDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHTCHHHHHHHHHHHHHHST----TCHHHHHHHHHHHTC--------------
T ss_pred HcCCHHHHHHHHHHHHHhCC----CChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 77777777777777665322 34556666667777777777777666553
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=3.2e-12 Score=122.08 Aligned_cols=224 Identities=11% Similarity=-0.074 Sum_probs=136.4
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcC----cCchHHHHHHHHHHHHcCCCCchhHHH
Q 048321 309 TRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQ----SGALELGKWFDNYACSGGLKDNVMVCN 384 (641)
Q Consensus 309 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 384 (641)
+..++..+...|...|++++|+..|++..+. -+...+..+...+.. .+++++|...++...+.+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--------- 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--------- 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---------
Confidence 3445555555666666666666666655542 122333333333443 444444444444444432
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhc--
Q 048321 385 ALIDMYSKCGSIGDARELFYALPEKIVVSWTTMIAGCAL----NGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTH-- 458 (641)
Q Consensus 385 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-- 458 (641)
+..++..+...|.. .+++++|+..|++..+.+ +...+..+...|..
T Consensus 73 -------------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~ 124 (273)
T 1ouv_A 73 -------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGK 124 (273)
T ss_dssp -------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCS
T ss_pred -------------------------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCC
Confidence 34455555555555 666666666666666643 44455555556666
Q ss_pred --cCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhc----cCChHHHHHHHHhCCCCCChhHHHHHHHHHHH----
Q 048321 459 --TGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGR----KGKLKEALDFVQSMPIKSDAGIWGTLLCACKI---- 528 (641)
Q Consensus 459 --~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~---- 528 (641)
.+++++|...|+...+ . .+...+..+...|.+ .+++++|+..+++.....++..+..+...+..
T Consensus 125 ~~~~~~~~A~~~~~~a~~-~-----~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~ 198 (273)
T 1ouv_A 125 VVTRDFKKAVEYFTKACD-L-----NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGA 198 (273)
T ss_dssp SSCCCHHHHHHHHHHHHH-T-----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred CcccCHHHHHHHHHHHHh-c-----CcHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCC
Confidence 6667777777766663 1 134455556666665 67777777777665533345666677777777
Q ss_pred cCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHh----cCCchHHHHHHHHHHhCC
Q 048321 529 HLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYAL----GGRWDGVANIRTMMKRNQ 580 (641)
Q Consensus 529 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~eA~~~~~~m~~~~ 580 (641)
.+++++|+..++++.+.+| +..+..++.+|.. .|++++|.+.+++..+.+
T Consensus 199 ~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 199 TKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp CCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 7788888888888877765 5677778888887 888888888887776654
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=8.2e-13 Score=126.18 Aligned_cols=218 Identities=13% Similarity=0.014 Sum_probs=181.0
Q ss_pred hcCcCchHHHHHHHHHHHHcCC---CCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChH
Q 048321 355 CGQSGALELGKWFDNYACSGGL---KDNVMVCNALIDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFV 428 (641)
Q Consensus 355 ~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 428 (641)
....|++++|...++.+.+... +.+..++..+...|...|++++|...|+++.+ .+..+|..+...+...|+++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHH
Confidence 4556899999999999998642 22467888899999999999999999998764 46789999999999999999
Q ss_pred HHHHHHHHHHHcCCCC-ChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHH
Q 048321 429 EALDLFHQLMELDLRP-NRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFV 507 (641)
Q Consensus 429 ~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 507 (641)
+|+..|+++.+. .| +..++..+...+...|++++|...|+.+.+. .|+..........+...|++++|...+
T Consensus 95 ~A~~~~~~al~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~~~~~A~~~~ 167 (275)
T 1xnf_A 95 AAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD-----DPNDPFRSLWLYLAEQKLDEKQAKEVL 167 (275)
T ss_dssp HHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHhc--CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHhcCHHHHHHHH
Confidence 999999999986 44 4568888889999999999999999999963 355555555556667789999999999
Q ss_pred HhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCC----CCccHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048321 508 QSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPH----SAAPYVEMANKYALGGRWDGVANIRTMMKRNQ 580 (641)
Q Consensus 508 ~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~~ 580 (641)
++.. .+++...| .++..+...++.+.|...++++++..|. ++..+..++.+|...|++++|.+.++++.+..
T Consensus 168 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 168 KQHFEKSDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp HHHHHHSCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHhcCCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 7755 44444444 4677778888999999999999988774 36789999999999999999999999988653
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.49 E-value=3.9e-12 Score=130.60 Aligned_cols=340 Identities=11% Similarity=-0.022 Sum_probs=228.0
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCch---HHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 048321 214 SMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVVSLLSSFVCPEAL---VQGRLVHSHGIHYGFDLDVSVINTLISMYS 290 (641)
Q Consensus 214 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 290 (641)
.+...+.+.|++++|+++|++..+.|. ...+..+...+...|+. ++|...+....+. ++..+..|..++.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC---CTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 466778889999999999999988763 33444455555667777 8999999988854 5555666777555
Q ss_pred hcC-----CHHHHHHHHhcCCC-CCcchHHHHHHHHHhCCChh---HHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcC--
Q 048321 291 KCG-----DIDSARVLFDGICD-RTRVSWTAMISGYAQKGDLD---EALRLFFAMEAAGELPDLVTVLSMISGCGQSG-- 359 (641)
Q Consensus 291 ~~g-----~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~-- 359 (641)
..+ +.++|...|++... .+...+..|...|...+..+ ++.+.+......|. | .....+...+...+
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~-~--~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY-P--EAGLAQVLLYRTQGTY 157 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC-T--THHHHHHHHHHHHTCG
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC-H--HHHHHHHHHHHcCCCc
Confidence 555 78899999987733 35558888888888766544 45555555555554 2 23334444454445
Q ss_pred --chHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC---CHHHHHHHHhhCCC---CChhHHHHHHHHHHHc----CCh
Q 048321 360 --ALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCG---SIGDARELFYALPE---KIVVSWTTMIAGCALN----GEF 427 (641)
Q Consensus 360 --~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~----g~~ 427 (641)
+.+.+..++.... ..++..+..|..+|.+.| +.++|.+.|+...+ ++...+..+...|... +++
T Consensus 158 ~~~~~~a~~~~~~a~----~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~ 233 (452)
T 3e4b_A 158 DQHLDDVERICKAAL----NTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDE 233 (452)
T ss_dssp GGGHHHHHHHHHHHT----TTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCH
T ss_pred ccCHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCH
Confidence 3444444444433 233448888999999999 99999999987754 3444446677777554 689
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHH-H--hccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccC-----C
Q 048321 428 VEALDLFHQLMELDLRPNRVTFLAVLQA-C--THTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKG-----K 499 (641)
Q Consensus 428 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-----~ 499 (641)
++|+..|++.. .| +...+..+... + ...+++++|...|+...+ . .+...+..|..+|. .| +
T Consensus 234 ~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~-~-----g~~~A~~~Lg~~y~-~G~g~~~d 302 (452)
T 3e4b_A 234 KTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA-A-----DQPRAELLLGKLYY-EGKWVPAD 302 (452)
T ss_dssp HHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH-T-----TCHHHHHHHHHHHH-HCSSSCCC
T ss_pred HHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-C-----CCHHHHHHHHHHHH-cCCCCCCC
Confidence 99999999987 33 34455555554 3 568999999999999883 3 36677778888887 55 9
Q ss_pred hHHHHHHHHhCCCCCChhHHHHHHHHHHH----cCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHh----cCCchHHHH
Q 048321 500 LKEALDFVQSMPIKSDAGIWGTLLCACKI----HLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYAL----GGRWDGVAN 571 (641)
Q Consensus 500 ~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~eA~~ 571 (641)
+++|+..|++.. +.++..+..|...|.. ..|.++|...++++.+. .++.....|+.+|.. ..+.++|..
T Consensus 303 ~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~ 379 (452)
T 3e4b_A 303 AKAAEAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYV 379 (452)
T ss_dssp HHHHHHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHH
T ss_pred HHHHHHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHH
Confidence 999999999988 6677788888877765 34999999999999874 568899999999985 558999999
Q ss_pred HHHHHHhCCC
Q 048321 572 IRTMMKRNQV 581 (641)
Q Consensus 572 ~~~~m~~~~~ 581 (641)
.++...+.|.
T Consensus 380 ~~~~A~~~g~ 389 (452)
T 3e4b_A 380 FSQLAKAQDT 389 (452)
T ss_dssp HHHHHHTTCC
T ss_pred HHHHHHHCCC
Confidence 9999988774
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.4e-13 Score=138.49 Aligned_cols=260 Identities=10% Similarity=-0.014 Sum_probs=169.4
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHhcCcCchHHHHHHHHHHHHc----C-CCCchhHHHHH
Q 048321 316 MISGYAQKGDLDEALRLFFAMEAAGELPDL----VTVLSMISGCGQSGALELGKWFDNYACSG----G-LKDNVMVCNAL 386 (641)
Q Consensus 316 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l 386 (641)
+...+...|++++|+..|++..+.... +. ..+..+...+...|++++|...++...+. + .+....++..+
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 132 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL 132 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHH
Confidence 334444555555555555555443211 11 23444444445555555555555544431 1 01223455666
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCC---------ChhHHHHHHHHHHHcCC-----------------hHHHHHHHHHHHHc
Q 048321 387 IDMYSKCGSIGDARELFYALPEK---------IVVSWTTMIAGCALNGE-----------------FVEALDLFHQLMEL 440 (641)
Q Consensus 387 i~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~m~~~ 440 (641)
...|...|++++|...|++.... ...+|..+...|...|+ +++|++.+++..+.
T Consensus 133 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~ 212 (411)
T 4a1s_A 133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL 212 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 66777777777777776655431 23467777777888888 88888887776542
Q ss_pred ----CCCCCh-hhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCC----hhHHHHHHHHhhccCChHHHHHHHHhCC
Q 048321 441 ----DLRPNR-VTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPE----LDHYSCMADLLGRKGKLKEALDFVQSMP 511 (641)
Q Consensus 441 ----g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 511 (641)
+-.|.. .++..+...+...|++++|...++...+... -.++ ...+..++.+|...|++++|...+++..
T Consensus 213 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 290 (411)
T 4a1s_A 213 MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAR--EFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTL 290 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--HHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH--hcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 111222 3666777788889999999999888875332 1112 2367888889999999999999988764
Q ss_pred -C---CC----ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCC------CccHHHHHHHHHhcCCchHHHHHHHHHH
Q 048321 512 -I---KS----DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHS------AAPYVEMANKYALGGRWDGVANIRTMMK 577 (641)
Q Consensus 512 -~---~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~eA~~~~~~m~ 577 (641)
. .. ...++..+...+...|++++|...+++++++.+.. ...+..++.+|...|++++|.+.+++..
T Consensus 291 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 291 ALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 1 11 14577788888999999999999999998875543 3478889999999999999999998876
Q ss_pred h
Q 048321 578 R 578 (641)
Q Consensus 578 ~ 578 (641)
+
T Consensus 371 ~ 371 (411)
T 4a1s_A 371 Q 371 (411)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.49 E-value=2e-13 Score=141.10 Aligned_cols=208 Identities=8% Similarity=-0.024 Sum_probs=168.9
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH-HHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHH
Q 048321 361 LELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSI-GDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQ 436 (641)
Q Consensus 361 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~ 436 (641)
++.+...++...... +.+...+..+...|...|++ ++|.+.|++..+ .+...|..+...|...|++++|++.|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344444444443322 34566677777777777777 777777776543 3567888888999999999999999999
Q ss_pred HHHcCCCCChhhHHHHHHHHhcc---------CChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhcc--------CC
Q 048321 437 LMELDLRPNRVTFLAVLQACTHT---------GFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRK--------GK 499 (641)
Q Consensus 437 m~~~g~~p~~~t~~~ll~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------g~ 499 (641)
..+. .|+...+..+...+... |++++|...|+++.+..+ .+...|..+..+|... |+
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV----LDGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHHHHhhccccch
Confidence 9886 57777888888888888 999999999999986433 4578889999999988 99
Q ss_pred hHHHHHHHHhCC-CCC----ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHH
Q 048321 500 LKEALDFVQSMP-IKS----DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRT 574 (641)
Q Consensus 500 ~~~A~~~~~~~~-~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~ 574 (641)
+++|++.|++.. ..| +...|..+...+...|++++|+..++++++++|+++..+..++.++...|++++|.+.+.
T Consensus 237 ~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 237 SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999976 345 677999999999999999999999999999999999999999999999999999987543
Q ss_pred H
Q 048321 575 M 575 (641)
Q Consensus 575 ~ 575 (641)
+
T Consensus 317 ~ 317 (474)
T 4abn_A 317 K 317 (474)
T ss_dssp T
T ss_pred c
Confidence 3
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=3.8e-12 Score=121.55 Aligned_cols=230 Identities=15% Similarity=0.030 Sum_probs=148.8
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC-CcchHHHHHHHHHh----CCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 048321 277 LDVSVINTLISMYSKCGDIDSARVLFDGICDR-TRVSWTAMISGYAQ----KGDLDEALRLFFAMEAAGELPDLVTVLSM 351 (641)
Q Consensus 277 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~t~~~l 351 (641)
.++..+..+...|...|++++|...|++..++ +..++..+...|.. .+++++|+..|++..+.+ +...+..+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 80 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL 80 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 35678888999999999999999999887444 55688889999999 999999999999998875 56667777
Q ss_pred HHHhcC----cCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCCh
Q 048321 352 ISGCGQ----SGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKIVVSWTTMIAGCALNGEF 427 (641)
Q Consensus 352 l~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 427 (641)
...+.. .++.++|...++...+.+ +...+..+..+|.... ...+++
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~---------------------------~~~~~~ 130 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGK---------------------------VVTRDF 130 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCS---------------------------SSCCCH
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCC---------------------------CcccCH
Confidence 777766 788888888887777654 3445555555554400 004455
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHhc----cCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhc----cCC
Q 048321 428 VEALDLFHQLMELDLRPNRVTFLAVLQACTH----TGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGR----KGK 499 (641)
Q Consensus 428 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~ 499 (641)
++|+..|++..+.+ +...+..+...|.. .+++++|...|+...+. .+...+..+..+|.+ .++
T Consensus 131 ~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~------~~~~a~~~lg~~~~~g~~~~~~ 201 (273)
T 1ouv_A 131 KKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL------KDSPGCFNAGNMYHHGEGATKN 201 (273)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTCSSCCC
T ss_pred HHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC------CCHHHHHHHHHHHHcCCCCCcc
Confidence 55555555555433 23334444444444 55566666665555531 123445555555555 666
Q ss_pred hHHHHHHHHhCCCCCChhHHHHHHHHHHH----cCCHHHHHHHHHHhHccCCC
Q 048321 500 LKEALDFVQSMPIKSDAGIWGTLLCACKI----HLNIEIGEYVAYCLFKLEPH 548 (641)
Q Consensus 500 ~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~ 548 (641)
+++|+..+++.....+...+..+...+.. .++.++|...++++.+++|+
T Consensus 202 ~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 202 FKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCH
Confidence 66666666654422234455566666666 67777777777777777665
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=5.1e-13 Score=135.66 Aligned_cols=270 Identities=11% Similarity=0.026 Sum_probs=123.9
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCC----cchHHHHHHHHHhCCChhHHHHHHHHHHHc----CCCCC-H
Q 048321 278 DVSVINTLISMYSKCGDIDSARVLFDGIC---DRT----RVSWTAMISGYAQKGDLDEALRLFFAMEAA----GELPD-L 345 (641)
Q Consensus 278 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~ 345 (641)
....+..+...+...|++++|...|++.. +.+ ...|..+...|...|++++|...|++.... +..|. .
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 34445555666666666666666666541 122 134555666666666666666666655431 11111 2
Q ss_pred HHHHHHHHHhcCcCchHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHc
Q 048321 346 VTVLSMISGCGQSGALELGKWFDNYACSGGL-KDNVMVCNALIDMYSKCGSIGDARELFYALPEKIVVSWTTMIAGCALN 424 (641)
Q Consensus 346 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 424 (641)
..+..+...+...|++++|...+....+... .++.. ....++..+...|...
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------------------------~~~~~~~~l~~~~~~~ 140 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKV---------------------------GEARALYNLGNVYHAK 140 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH---------------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccccc---------------------------chHHHHHHHHHHHHHc
Confidence 2334444444555555555555544443100 00000 0012344444444444
Q ss_pred CC--------------------hHHHHHHHHHHHHc----CCCCC-hhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCC
Q 048321 425 GE--------------------FVEALDLFHQLMEL----DLRPN-RVTFLAVLQACTHTGFLEKGWAISIIQYDDKGIS 479 (641)
Q Consensus 425 g~--------------------~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 479 (641)
|+ +++|+..+++.... +-.|. ..++..+...+...|++++|...++...+...
T Consensus 141 g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-- 218 (406)
T 3sf4_A 141 GKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK-- 218 (406)
T ss_dssp HHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHH--
T ss_pred CCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH--
Confidence 44 45555444443321 10111 11344444455555555555555555443221
Q ss_pred CCCC----hhHHHHHHHHhhccCChHHHHHHHHhCC----CCCC----hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCC
Q 048321 480 YNPE----LDHYSCMADLLGRKGKLKEALDFVQSMP----IKSD----AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEP 547 (641)
Q Consensus 480 ~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 547 (641)
-.++ ...+..++.+|...|++++|...+++.. ..++ ..++..+...+...|++++|...+++++++.+
T Consensus 219 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 298 (406)
T 3sf4_A 219 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 298 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 1111 1244455555555555555555555432 0011 22444455555555555555555555554433
Q ss_pred CC------CccHHHHHHHHHhcCCchHHHHHHHHH
Q 048321 548 HS------AAPYVEMANKYALGGRWDGVANIRTMM 576 (641)
Q Consensus 548 ~~------~~~~~~l~~~~~~~g~~~eA~~~~~~m 576 (641)
.. ...+..++.+|...|++++|.+.+++.
T Consensus 299 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 333 (406)
T 3sf4_A 299 ELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 333 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 22 234455555555555555555555544
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.47 E-value=6.9e-13 Score=130.63 Aligned_cols=260 Identities=12% Similarity=0.020 Sum_probs=172.0
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHhcCcCchHHHHHHHHHHHHc----CCC-CchhHHHHHH
Q 048321 317 ISGYAQKGDLDEALRLFFAMEAAGELPD----LVTVLSMISGCGQSGALELGKWFDNYACSG----GLK-DNVMVCNALI 387 (641)
Q Consensus 317 i~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~li 387 (641)
...+...|++++|...|++..+.... + ...+..+...+...|+++.|...++...+. +.. ....++..+.
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 90 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG 90 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 34445555555555555555543211 1 133444444555555555555555544331 111 1244566667
Q ss_pred HHHHhcCCHHHHHHHHhhCCC-----CC----hhHHHHHHHHHHHcCC--------------------hHHHHHHHHHHH
Q 048321 388 DMYSKCGSIGDARELFYALPE-----KI----VVSWTTMIAGCALNGE--------------------FVEALDLFHQLM 438 (641)
Q Consensus 388 ~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~ 438 (641)
..|...|++++|...|++..+ .+ ..++..+...+...|+ +++|++.+++..
T Consensus 91 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~ 170 (338)
T 3ro2_A 91 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENL 170 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 777777777777777766543 12 2367777777888888 888888887765
Q ss_pred Hc----CCCCC-hhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCC----hhHHHHHHHHhhccCChHHHHHHHHh
Q 048321 439 EL----DLRPN-RVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPE----LDHYSCMADLLGRKGKLKEALDFVQS 509 (641)
Q Consensus 439 ~~----g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 509 (641)
.. +-.|. ..++..+...+...|++++|...++...+... -.++ ...+..++..+.+.|++++|...+++
T Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 248 (338)
T 3ro2_A 171 SLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK--EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 248 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH--HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH--hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 42 11121 23666777788889999999999988875332 1122 33678888899999999999999887
Q ss_pred CC----CCCC----hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCC------CccHHHHHHHHHhcCCchHHHHHHHH
Q 048321 510 MP----IKSD----AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHS------AAPYVEMANKYALGGRWDGVANIRTM 575 (641)
Q Consensus 510 ~~----~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~eA~~~~~~ 575 (641)
.. ..++ ..++..+...+...|++++|...+++++++.|.. ...+..++.+|...|++++|.+.+++
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (338)
T 3ro2_A 249 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 328 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 64 1112 4467778888999999999999999998876543 33788899999999999999999998
Q ss_pred HHhC
Q 048321 576 MKRN 579 (641)
Q Consensus 576 m~~~ 579 (641)
..+.
T Consensus 329 a~~~ 332 (338)
T 3ro2_A 329 HLEI 332 (338)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 8764
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=7.7e-13 Score=134.29 Aligned_cols=295 Identities=13% Similarity=0.009 Sum_probs=205.6
Q ss_pred CChhhHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCc----hhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----C----
Q 048321 242 LDVTTVVSLLSSFVCPEALVQGRLVHSHGIHYGFDLD----VSVINTLISMYSKCGDIDSARVLFDGICD-----R---- 308 (641)
Q Consensus 242 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~---- 308 (641)
+....+......+...|++++|...++.+++.+ +.+ ..++..+...|...|++++|...|++... .
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 445556677788889999999999999999885 233 35788899999999999999999886511 1
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHhcCcCc--------------------hHH
Q 048321 309 TRVSWTAMISGYAQKGDLDEALRLFFAMEAAGE-LPD----LVTVLSMISGCGQSGA--------------------LEL 363 (641)
Q Consensus 309 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~t~~~ll~~~~~~~~--------------------~~~ 363 (641)
...++..+...|...|++++|...+++...... .++ ..++..+...+...|+ ++.
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 234688888999999999999999998865311 011 2244445555555555 444
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCC--ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 048321 364 GKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEK--IVVSWTTMIAGCALNGEFVEALDLFHQLMELD 441 (641)
Q Consensus 364 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 441 (641)
|...+....+ ++.....+ ...+|..+...+...|++++|+..+++..+..
T Consensus 166 A~~~~~~al~----------------------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 217 (406)
T 3sf4_A 166 AVDFYEENLS----------------------------LVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA 217 (406)
T ss_dssp HHHHHHHHHH----------------------------HHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----------------------------HHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 4444333322 22222111 12466777777888888888888888776531
Q ss_pred C-CCC----hhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCC----hhHHHHHHHHhhccCChHHHHHHHHhCC-
Q 048321 442 L-RPN----RVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPE----LDHYSCMADLLGRKGKLKEALDFVQSMP- 511 (641)
Q Consensus 442 ~-~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 511 (641)
. .++ ..++..+...+...|++++|...++...+... -.++ ...+..++..|.+.|++++|...+++..
T Consensus 218 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 218 KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLAR--QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH--hCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 0 122 12667777788888899999888888775332 1112 4567788888999999999999888764
Q ss_pred ---CCCC----hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCC------CCccHHHHHHHHHhcCCch
Q 048321 512 ---IKSD----AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPH------SAAPYVEMANKYALGGRWD 567 (641)
Q Consensus 512 ---~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~ 567 (641)
..++ ..++..+...+...|++++|...+++++++.+. ....+..++.+|...|+..
T Consensus 296 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 296 IAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 1122 447778888899999999999999999877432 3456788899999888764
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.41 E-value=4.8e-12 Score=112.72 Aligned_cols=166 Identities=8% Similarity=-0.043 Sum_probs=142.6
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh-hhHHHHH
Q 048321 378 DNVMVCNALIDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNR-VTFLAVL 453 (641)
Q Consensus 378 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll 453 (641)
.+..+|..+...|.+.|++++|.+.|++..+ .+..+|..+...|.+.|++++|+..+++.... .|+. ..+..+.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~ 80 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILG 80 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 3567888899999999999999999998765 46788999999999999999999999999886 4544 4666677
Q ss_pred HHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCC
Q 048321 454 QACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLN 531 (641)
Q Consensus 454 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~ 531 (641)
..+...++++.+...+.......+ .+...+..+..+|.+.|++++|++.|++.. .+.+..+|..+...+...|+
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~----~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~ 156 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNT----VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGL 156 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCc----cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCC
Confidence 788899999999999999986433 457788999999999999999999999876 44467789999999999999
Q ss_pred HHHHHHHHHHhHccCCCC
Q 048321 532 IEIGEYVAYCLFKLEPHS 549 (641)
Q Consensus 532 ~~~a~~~~~~~~~~~p~~ 549 (641)
+++|+..++++++++|++
T Consensus 157 ~~~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 157 RDEAVKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHhCCccC
Confidence 999999999999999975
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.41 E-value=4.8e-11 Score=115.96 Aligned_cols=220 Identities=10% Similarity=-0.022 Sum_probs=164.1
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHhc-------CcCch-------HHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 048321 327 DEALRLFFAMEAAGELPDLVTVLSMISGCG-------QSGAL-------ELGKWFDNYACSGGLKDNVMVCNALIDMYSK 392 (641)
Q Consensus 327 ~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 392 (641)
++|..+|++..... +-+...|..+...+. ..|+. ++|..++++.++.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56777777776642 233444544444443 34664 7888888888873224456788888999999
Q ss_pred cCCHHHHHHHHhhCCC--C-Chh-HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHH-hccCChHHHHH
Q 048321 393 CGSIGDARELFYALPE--K-IVV-SWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQAC-THTGFLEKGWA 467 (641)
Q Consensus 393 ~g~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~-~~~g~~~~a~~ 467 (641)
.|++++|..+|++..+ | +.. .|..++..+.+.|++++|..+|++..+.. +++...|....... ...|++++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999988765 3 333 79999999999999999999999998753 22333444333332 23699999999
Q ss_pred HHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCCC----CC--ChhHHHHHHHHHHHcCCHHHHHHHHHH
Q 048321 468 ISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMPI----KS--DAGIWGTLLCACKIHLNIEIGEYVAYC 541 (641)
Q Consensus 468 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~ 541 (641)
+|+.+.+..+ .+...|..++..+.+.|++++|..+|++... +| ....|..++......|+.+.|..++++
T Consensus 191 ~~~~al~~~p----~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 191 IFELGLKKYG----DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHT----TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHhCC----CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999987655 4678889999999999999999999998752 44 355888889888999999999999999
Q ss_pred hHccCCCCCcc
Q 048321 542 LFKLEPHSAAP 552 (641)
Q Consensus 542 ~~~~~p~~~~~ 552 (641)
+++..|+++..
T Consensus 267 a~~~~p~~~~~ 277 (308)
T 2ond_A 267 RFTAFREEYEG 277 (308)
T ss_dssp HHHHTTTTTSS
T ss_pred HHHHccccccc
Confidence 99999986544
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=4.1e-12 Score=136.54 Aligned_cols=162 Identities=18% Similarity=0.156 Sum_probs=142.5
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCC-hhHH
Q 048321 410 IVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNR-VTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPE-LDHY 487 (641)
Q Consensus 410 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~-~~~~ 487 (641)
+..+|+.|...|.+.|++++|++.|++..+. .|+. .++..+..+|.+.|++++|.+.|+++.+. .|+ ...|
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l-----~P~~~~a~ 80 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI-----SPTFADAY 80 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHH
Confidence 3467888899999999999999999999886 6665 48888888999999999999999999863 344 7889
Q ss_pred HHHHHHhhccCChHHHHHHHHhCC-CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCC
Q 048321 488 SCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGR 565 (641)
Q Consensus 488 ~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 565 (641)
..++.+|.+.|++++|++.|++.. ..| +...|..+...+...|++++|+..++++++++|+++..|..++.+|...|+
T Consensus 81 ~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 81 SNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhccc
Confidence 999999999999999999999876 444 567999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHh
Q 048321 566 WDGVANIRTMMKR 578 (641)
Q Consensus 566 ~~eA~~~~~~m~~ 578 (641)
|++|.+.++++.+
T Consensus 161 ~~~A~~~~~kal~ 173 (723)
T 4gyw_A 161 WTDYDERMKKLVS 173 (723)
T ss_dssp CTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999998887654
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.38 E-value=6.2e-10 Score=118.18 Aligned_cols=435 Identities=9% Similarity=-0.046 Sum_probs=277.3
Q ss_pred ChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHHcCCCChhHHHHHHHHhHcCCC---hhHHHH
Q 048321 121 FLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISSYAKCDD---LKMAEL 197 (641)
Q Consensus 121 ~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~---~~~A~~ 197 (641)
...+.+..|++..... +-|..+|..++..+.+.+.++.+..+++.++.. ++.....|...+..-.+.|+ ++.+..
T Consensus 47 ~~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CCSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 3445555566665554 457788999999888888899999999988876 45567788888888888888 899999
Q ss_pred HHhcccCCC---CCchhHHHHHHHHhcCCCc----hH----HHHHHHHHHH-CCC-CCCh-hhHHHHHHHhcC-------
Q 048321 198 VFCGIEERL---RTVVSWNSMVAGCTYGDKF----DD----SLNFYRHMMY-NGF-RLDV-TTVVSLLSSFVC------- 256 (641)
Q Consensus 198 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~----~~----A~~~~~~m~~-~g~-~p~~-~t~~~ll~~~~~------- 256 (641)
+|++..... |++..|...+.-..+.++. ++ ..++|+.... .|. .|+. ..|...+.....
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ 204 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF 204 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence 998888774 7888888877655554443 22 3356665443 355 4443 344444433221
Q ss_pred --CCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHH
Q 048321 257 --PEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGICDRTRVSWTAMISGYAQKGDLDEALRLFF 334 (641)
Q Consensus 257 --~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 334 (641)
.++++.+..+|..++......-..+|......-...+. ..+.+++.+ ...+++.|...+.
T Consensus 205 eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e-----------------~~~~y~~Ar~~~~ 266 (679)
T 4e6h_A 205 EEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGE-----------------LSAQYMNARSLYQ 266 (679)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHH-----------------HHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHH-----------------hhHHHHHHHHHHH
Confidence 12345566666666532111111222222111111000 001111110 0113344445554
Q ss_pred HHHH--cCCC---------------C-----CH---HHHHHHHHHhcCcC-------chHHHHHHHHHHHHcCCCCchhH
Q 048321 335 AMEA--AGEL---------------P-----DL---VTVLSMISGCGQSG-------ALELGKWFDNYACSGGLKDNVMV 382 (641)
Q Consensus 335 ~m~~--~~~~---------------p-----~~---~t~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~ 382 (641)
++.. .++. | +. ..|...+.---..+ ..+.+..+|++.+... +.+..+
T Consensus 267 e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~l 345 (679)
T 4e6h_A 267 DWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEI 345 (679)
T ss_dssp HHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHH
T ss_pred HHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHH
Confidence 4322 1110 1 11 12333332221111 1234556788777753 557888
Q ss_pred HHHHHHHHHhcCCHHHHH-HHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCC---------CCC----
Q 048321 383 CNALIDMYSKCGSIGDAR-ELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDL---------RPN---- 445 (641)
Q Consensus 383 ~~~li~~~~~~g~~~~A~-~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---------~p~---- 445 (641)
|...+..+...|+.++|. ++|++... .+...|-..+...-+.|+++.|.++|+++..... .|+
T Consensus 346 W~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~ 425 (679)
T 4e6h_A 346 WFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESA 425 (679)
T ss_dssp HHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhh
Confidence 888899888999999996 99987654 3566788888888999999999999999986410 142
Q ss_pred --------hhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccC-ChHHHHHHHHhCC--CCC
Q 048321 446 --------RVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKG-KLKEALDFVQSMP--IKS 514 (641)
Q Consensus 446 --------~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~--~~p 514 (641)
...|...+....+.|.++.|+.+|..+.+..+ .+....|...+.+-.+.| +.+.|..+|+... .+.
T Consensus 426 ~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~---~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~ 502 (679)
T 4e6h_A 426 INQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK---LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFAT 502 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG---GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTT
T ss_pred hhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC---CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC
Confidence 22567777777788999999999999986412 123344544444444554 5899999999876 455
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCC---CCccHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 515 DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPH---SAAPYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 515 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
+...|...+......|+.+.|..+|++++...|+ ....|....+.-...|..+.+.++.+.+.+.
T Consensus 503 ~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 503 DGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6778888888888899999999999999998873 3456777788888899999999999988653
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.38 E-value=5.9e-12 Score=128.14 Aligned_cols=266 Identities=14% Similarity=0.011 Sum_probs=164.3
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHHhCCCCch----hHHHHHHHHHHhcCCHHHHHHHHhcCCC---------CCcchHHH
Q 048321 249 SLLSSFVCPEALVQGRLVHSHGIHYGFDLDV----SVINTLISMYSKCGDIDSARVLFDGICD---------RTRVSWTA 315 (641)
Q Consensus 249 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~ 315 (641)
.+...+...|++++|...++.+++.+. .+. .++..+...|...|++++|...|++... ....++..
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAGT-EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhcc-cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 344455556666666666666665531 122 3455555555556666666555544311 01223444
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcC-CCCchhHHHHHHHHHHhcC
Q 048321 316 MISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGG-LKDNVMVCNALIDMYSKCG 394 (641)
Q Consensus 316 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g 394 (641)
+...|...|++++|...|++...... +.+ .+....++..+...|...|
T Consensus 132 l~~~~~~~g~~~~A~~~~~~al~~~~-------------------------------~~~~~~~~~~~~~~l~~~~~~~g 180 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERHLTLAR-------------------------------QLGDRLSEGRALYNLGNVYHAKG 180 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHH-------------------------------HHTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHH-------------------------------HhhchHHHHHHHHHHHHHHHHcC
Confidence 44555555555555555554432100 001 0112334555566666666
Q ss_pred C-----------------HHHHHHHHhhCCC-----C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC--
Q 048321 395 S-----------------IGDARELFYALPE-----K----IVVSWTTMIAGCALNGEFVEALDLFHQLMELDL-RPN-- 445 (641)
Q Consensus 395 ~-----------------~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-- 445 (641)
+ +++|.+.+++... . ...+|..+...|...|++++|+..|++..+... .++
T Consensus 181 ~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 260 (411)
T 4a1s_A 181 KHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRA 260 (411)
T ss_dssp HHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred cccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcH
Confidence 6 6666666555432 1 234677788888888999999998888876311 112
Q ss_pred --hhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCC----ChhHHHHHHHHhhccCChHHHHHHHHhCC-C---CCC
Q 048321 446 --RVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNP----ELDHYSCMADLLGRKGKLKEALDFVQSMP-I---KSD 515 (641)
Q Consensus 446 --~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~---~p~ 515 (641)
..++..+...+...|++++|...++.+.+... -.. ....+..+..+|.+.|++++|...+++.. . .++
T Consensus 261 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 338 (411)
T 4a1s_A 261 AERRANSNLGNSHIFLGQFEDAAEHYKRTLALAV--ELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD 338 (411)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence 12677778888999999999999988875332 111 14677888899999999999999998864 1 111
Q ss_pred ----hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCC
Q 048321 516 ----AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPH 548 (641)
Q Consensus 516 ----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 548 (641)
..++..+...+...|++++|...+++++++.+.
T Consensus 339 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 339 RIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 346777888999999999999999999988764
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.2e-11 Score=114.48 Aligned_cols=187 Identities=11% Similarity=-0.045 Sum_probs=81.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh-hHHHHHH
Q 048321 380 VMVCNALIDMYSKCGSIGDARELFYALPE----KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRV-TFLAVLQ 454 (641)
Q Consensus 380 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~ 454 (641)
+..+......|...|++++|...|+...+ ++...|..+..++...|++++|+..|++..+. .|+.. .+..+..
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~ 84 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKSA 84 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHHH
Confidence 34444444445555555555555544322 23334444444444555555555555554443 33322 3444444
Q ss_pred HHhccCChHHHHHHHHHHHhhhCCCCCCCh-------hHHHHHHHHhhccCChHHHHHHHHhCC-CCCC---hhHHHHHH
Q 048321 455 ACTHTGFLEKGWAISIIQYDDKGISYNPEL-------DHYSCMADLLGRKGKLKEALDFVQSMP-IKSD---AGIWGTLL 523 (641)
Q Consensus 455 ~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~---~~~~~~ll 523 (641)
.+...|++++|...|+...+..+ .+. ..|..+...+.+.|++++|++.|++.. ..|+ ...|..+.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p----~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVP----GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST----TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCC----CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 44455555555555554443222 112 234444444444444444444444433 2332 22333333
Q ss_pred HHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 524 CACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 524 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
..+.. .+...++++..+.+.++..| ........|.+++|...+++..+.
T Consensus 161 ~~~~~-----~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 161 VLFYN-----NGADVLRKATPLASSNKEKY--ASEKAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHH-----HHHHHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-----HHHHHHHHHHhcccCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33322 22233333344433322222 122223334448899998887763
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.36 E-value=1.5e-11 Score=109.29 Aligned_cols=159 Identities=14% Similarity=0.046 Sum_probs=87.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHh
Q 048321 415 TTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLL 494 (641)
Q Consensus 415 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~ 494 (641)
..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...++.+.+..+ .+...+..++..+
T Consensus 12 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~~a~~~ 86 (186)
T 3as5_A 12 RDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP----DNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC----CCHHHHHHHHHHH
Confidence 333444444444444444444443321 11223344444444445555555555555443211 2344445555555
Q ss_pred hccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHH
Q 048321 495 GRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANI 572 (641)
Q Consensus 495 ~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~ 572 (641)
...|++++|.+.++++. .+.+...|..+...+...|++++|...++++++..|+++..+..++.+|...|++++|.+.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 55555555555555543 2334556666666677777777777777777777777777777777777777777777777
Q ss_pred HHHHHh
Q 048321 573 RTMMKR 578 (641)
Q Consensus 573 ~~~m~~ 578 (641)
++++.+
T Consensus 167 ~~~~~~ 172 (186)
T 3as5_A 167 FKKANE 172 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766654
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.36 E-value=3.3e-11 Score=117.15 Aligned_cols=212 Identities=6% Similarity=-0.040 Sum_probs=173.1
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHH-------hcCCH-------HHHHHHHhhCCC---C-ChhHHHHHHHHHHH
Q 048321 362 ELGKWFDNYACSGGLKDNVMVCNALIDMYS-------KCGSI-------GDARELFYALPE---K-IVVSWTTMIAGCAL 423 (641)
Q Consensus 362 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~~~~---~-~~~~~~~li~~~~~ 423 (641)
+.|..+|+++++.. +.++.+|..++..+. +.|++ ++|..+|++... | +...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 67778888888764 567788888888776 35886 899999998654 3 55689999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCChh--hHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhh-ccCCh
Q 048321 424 NGEFVEALDLFHQLMELDLRPNRV--TFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLG-RKGKL 500 (641)
Q Consensus 424 ~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~ 500 (641)
.|++++|..+|+++.+. .|+.. .|..+...+.+.|++++|..+|+++.+..+ ++...|...+.... ..|++
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p----~~~~~~~~~a~~~~~~~~~~ 185 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR----TRHHVYVTAALMEYYCSKDK 185 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT----CCTHHHHHHHHHHHHTSCCH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC----CCHHHHHHHHHHHHHHcCCH
Confidence 99999999999999984 67643 788888899999999999999999985332 34555554444422 37999
Q ss_pred HHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHcc---CCC-CCccHHHHHHHHHhcCCchHHHHHHH
Q 048321 501 KEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKL---EPH-SAAPYVEMANKYALGGRWDGVANIRT 574 (641)
Q Consensus 501 ~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~eA~~~~~ 574 (641)
++|..+|++.. .+.+...|..++..+...|+.++|+.+++++++. .|+ ....|..++..+.+.|++++|..+++
T Consensus 186 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~ 265 (308)
T 2ond_A 186 SVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999976 3446779999999999999999999999999995 553 56688899999999999999999999
Q ss_pred HHHhCC
Q 048321 575 MMKRNQ 580 (641)
Q Consensus 575 ~m~~~~ 580 (641)
.+.+..
T Consensus 266 ~a~~~~ 271 (308)
T 2ond_A 266 RRFTAF 271 (308)
T ss_dssp HHHHHT
T ss_pred HHHHHc
Confidence 887654
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.3e-11 Score=127.65 Aligned_cols=177 Identities=7% Similarity=-0.072 Sum_probs=155.9
Q ss_pred HHHHHHHHhhCCC---CChhHHHHHHHHHHHcCCh-HHHHHHHHHHHHcCCCCC-hhhHHHHHHHHhccCChHHHHHHHH
Q 048321 396 IGDARELFYALPE---KIVVSWTTMIAGCALNGEF-VEALDLFHQLMELDLRPN-RVTFLAVLQACTHTGFLEKGWAISI 470 (641)
Q Consensus 396 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~ 470 (641)
++++...++.... .+...|..+...+...|++ ++|++.|++..+. .|+ ...+..+..+|...|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4556666655433 4678899999999999999 9999999999986 565 5588889999999999999999999
Q ss_pred HHHhhhCCCCCCChhHHHHHHHHhhcc---------CChHHHHHHHHhCC--CCCChhHHHHHHHHHHHc--------CC
Q 048321 471 IQYDDKGISYNPELDHYSCMADLLGRK---------GKLKEALDFVQSMP--IKSDAGIWGTLLCACKIH--------LN 531 (641)
Q Consensus 471 ~~~~~~~~~~~p~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~--------g~ 531 (641)
.+.+ +.|+...+..+..+|... |++++|++.+++.. .+.+...|..+..++... |+
T Consensus 162 ~al~-----~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 162 GALT-----HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHT-----TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHh-----hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccch
Confidence 9985 557888899999999999 99999999999976 444677999999999988 99
Q ss_pred HHHHHHHHHHhHccCC---CCCccHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 532 IEIGEYVAYCLFKLEP---HSAAPYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 532 ~~~a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
+++|+..++++++++| +++..|..++.+|...|++++|.+.+++..+.
T Consensus 237 ~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 237 SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999 89999999999999999999999999998764
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.2e-11 Score=121.61 Aligned_cols=266 Identities=13% Similarity=0.018 Sum_probs=160.5
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHHhCCCCc----hhHHHHHHHHHHhcCCHHHHHHHHhcCCC---------CCcchHHH
Q 048321 249 SLLSSFVCPEALVQGRLVHSHGIHYGFDLD----VSVINTLISMYSKCGDIDSARVLFDGICD---------RTRVSWTA 315 (641)
Q Consensus 249 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~ 315 (641)
.....+...|++++|...++.+++.. +.+ ..++..+...|...|++++|...|++... ....++..
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 33444556666666666666666653 112 24455555666666666666665554310 01223444
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 048321 316 MISGYAQKGDLDEALRLFFAMEAAGE-LPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCG 394 (641)
Q Consensus 316 li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 394 (641)
+...|...|++++|...+++..+... .++. .....++..+...|...|
T Consensus 89 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------------------~~~~~~~~~l~~~~~~~~ 137 (338)
T 3ro2_A 89 LGNTLKVLGNFDEAIVCCQRHLDISRELNDK-------------------------------VGEARALYNLGNVYHAKG 137 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-------------------------------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCc-------------------------------hHHHHHHHHHHHHHHHcC
Confidence 45555555555555555554433100 0110 001224445555555555
Q ss_pred C--------------------HHHHHHHHhhCCC-----C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CC
Q 048321 395 S--------------------IGDARELFYALPE-----K----IVVSWTTMIAGCALNGEFVEALDLFHQLMELDL-RP 444 (641)
Q Consensus 395 ~--------------------~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p 444 (641)
+ +++|...+++... . ...++..+...+...|++++|+..+++..+... .+
T Consensus 138 ~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 217 (338)
T 3ro2_A 138 KSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG 217 (338)
T ss_dssp HTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred cccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC
Confidence 5 5666555554322 1 134677777888888888888888888765310 11
Q ss_pred C----hhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCC----hhHHHHHHHHhhccCChHHHHHHHHhCC-C---
Q 048321 445 N----RVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPE----LDHYSCMADLLGRKGKLKEALDFVQSMP-I--- 512 (641)
Q Consensus 445 ~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~--- 512 (641)
+ ..++..+...+...|++++|...++...+... -.++ ...+..+...|...|++++|...+++.. .
T Consensus 218 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 218 DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLAR--QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 1 12667777788889999999999888775332 1122 5567788889999999999999988764 1
Q ss_pred CCC----hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCC
Q 048321 513 KSD----AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPH 548 (641)
Q Consensus 513 ~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 548 (641)
.++ ..++..+...+...|++++|...+++++++.+.
T Consensus 296 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 296 LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 111 346778888999999999999999999988765
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.3e-11 Score=124.23 Aligned_cols=223 Identities=9% Similarity=-0.076 Sum_probs=132.4
Q ss_pred hcCcCchHHHHHHHHHHHHc----CCCC-chhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----C-----ChhHHHHHHH
Q 048321 355 CGQSGALELGKWFDNYACSG----GLKD-NVMVCNALIDMYSKCGSIGDARELFYALPE-----K-----IVVSWTTMIA 419 (641)
Q Consensus 355 ~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~-----~~~~~~~li~ 419 (641)
+...|++++|...+....+. +-++ ...++..+...|...|++++|...+++..+ + ...+++.+..
T Consensus 113 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 192 (383)
T 3ulq_A 113 ELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFAT 192 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 44455555555555555542 1011 234555566666666666666666555432 1 1245666777
Q ss_pred HHHHcCChHHHHHHHHHHHHcCC-CCCh----hhHHHHHHHHhccCChHHHHHHHHHHHhhhCCC-C-CCChhHHHHHHH
Q 048321 420 GCALNGEFVEALDLFHQLMELDL-RPNR----VTFLAVLQACTHTGFLEKGWAISIIQYDDKGIS-Y-NPELDHYSCMAD 492 (641)
Q Consensus 420 ~~~~~g~~~~A~~~~~~m~~~g~-~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~-~p~~~~~~~l~~ 492 (641)
.|...|++++|+..|++..+... .++. .++..+...|...|++++|...|+...+..... . .....++..++.
T Consensus 193 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 272 (383)
T 3ulq_A 193 NFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQ 272 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHH
Confidence 77777777777777777664210 1111 256666667777777777777777776421100 1 122455677777
Q ss_pred HhhccCChHHHHHHHHhCC------CCCC-hhHHHHHHHHHHHcCC---HHHHHHHHHHhHccCCCCCccHHHHHHHHHh
Q 048321 493 LLGRKGKLKEALDFVQSMP------IKSD-AGIWGTLLCACKIHLN---IEIGEYVAYCLFKLEPHSAAPYVEMANKYAL 562 (641)
Q Consensus 493 ~~~~~g~~~~A~~~~~~~~------~~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 562 (641)
+|.+.|++++|...+++.. ..|. ...+..+...+...|+ .++|...+++. ...|.....+..++.+|..
T Consensus 273 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~ 351 (383)
T 3ulq_A 273 IHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHE 351 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHH
Confidence 7777788777777777654 1121 1224455556666677 66666666665 3333445567778888888
Q ss_pred cCCchHHHHHHHHHHh
Q 048321 563 GGRWDGVANIRTMMKR 578 (641)
Q Consensus 563 ~g~~~eA~~~~~~m~~ 578 (641)
.|++++|.+.+++..+
T Consensus 352 ~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 352 RKNFQKASAYFLKVEQ 367 (383)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 8888888888877654
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.2e-12 Score=127.44 Aligned_cols=237 Identities=14% Similarity=0.105 Sum_probs=116.5
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHHHHc-------CCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHc------CC-
Q 048321 311 VSWTAMISGYAQKGDLDEALRLFFAMEAA-------GELPDLVTVLSMISGCGQSGALELGKWFDNYACSG------GL- 376 (641)
Q Consensus 311 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~- 376 (641)
.+|..+...+...|++++|..+|+++.+. ........+..+...+...|++++|...++.+.+. +-
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 46777888888888888888888887652 11222334555555566666666666666655542 11
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHc------CCCCCh-hhH
Q 048321 377 KDNVMVCNALIDMYSKCGSIGDARELFYALPEKIVVSWTTMIAGCALNGEFVEALDLFHQLMEL------DLRPNR-VTF 449 (641)
Q Consensus 377 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~-~t~ 449 (641)
+....++..+...|.. .|++++|+..|+++.+. +-.|+. ..+
T Consensus 108 ~~~~~~~~~l~~~~~~-------------------------------~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 156 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGK-------------------------------RGKYKEAEPLCKRALEIREKVLGKDHPDVAKQL 156 (311)
T ss_dssp HHHHHHHHHHHHHHHT-------------------------------TTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH-------------------------------cCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 1123344444444444 44555555444444432 111211 234
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHhhhCCC---CCCC-hhHHHHHHHHhhccCChHHHHHHHHhCC----------CCC-
Q 048321 450 LAVLQACTHTGFLEKGWAISIIQYDDKGIS---YNPE-LDHYSCMADLLGRKGKLKEALDFVQSMP----------IKS- 514 (641)
Q Consensus 450 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~p- 514 (641)
..+...+...|++++|..+|+.+.+..... ..|. ...+..++.+|.+.|++++|...++++. ..+
T Consensus 157 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 236 (311)
T 3nf1_A 157 NNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDE 236 (311)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 444445555555555555555554321000 0111 2344555555555566666555555532 011
Q ss_pred ChhHH------HHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048321 515 DAGIW------GTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 515 ~~~~~------~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
....| ..+...+...+.+.++...++++....|..+..+..++.+|.+.|++++|.+.+++..+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 237 NKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 11111 11222233344455555566666666677777777888888888888888887776654
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=4.6e-12 Score=123.29 Aligned_cols=241 Identities=12% Similarity=0.053 Sum_probs=148.0
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--------C---CcchHHHHHHHHHhCCChhHHHHHHHHHHHc------
Q 048321 277 LDVSVINTLISMYSKCGDIDSARVLFDGICD--------R---TRVSWTAMISGYAQKGDLDEALRLFFAMEAA------ 339 (641)
Q Consensus 277 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------ 339 (641)
.+..++..+...|...|++++|..+|+++.. . ...++..+...|...|++++|...|++....
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 3457888999999999999999999987733 1 2346888999999999999999999998764
Q ss_pred CCCC-CHHHHHHHHHHhcCcCchHHHHHHHHHHHHc------CCCC-chhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCh
Q 048321 340 GELP-DLVTVLSMISGCGQSGALELGKWFDNYACSG------GLKD-NVMVCNALIDMYSKCGSIGDARELFYALPEKIV 411 (641)
Q Consensus 340 ~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 411 (641)
+..| ....+..+...+...|++++|...++.+.+. +..| ...++..+...|...|+
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---------------- 168 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGK---------------- 168 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTC----------------
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCC----------------
Confidence 2223 3456778888899999999999999988763 1111 22334444444444454
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHc------CCCCCh-hhHHHHHHHHhccCChHHHHHHHHHHHhhhCC----CC
Q 048321 412 VSWTTMIAGCALNGEFVEALDLFHQLMEL------DLRPNR-VTFLAVLQACTHTGFLEKGWAISIIQYDDKGI----SY 480 (641)
Q Consensus 412 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~----~~ 480 (641)
+++|+++|+++.+. +-.|+. .++..+...+...|++++|...++.+.+.... ..
T Consensus 169 ---------------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 233 (311)
T 3nf1_A 169 ---------------YEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSV 233 (311)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred ---------------HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 44444444444432 111221 24444555555556666666555555532100 00
Q ss_pred CC-------ChhHHHHHHHHhhccCChHHHHHHHHhCC-CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCC
Q 048321 481 NP-------ELDHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPH 548 (641)
Q Consensus 481 ~p-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 548 (641)
.+ ....+..+...+...+.+.+|...+.... ..| +..+|..+...|...|++++|...+++++++.|+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 234 DDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp ----CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred CcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 11 11222333344555666677777777765 334 4557888999999999999999999999998775
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.31 E-value=1.4e-10 Score=102.94 Aligned_cols=168 Identities=10% Similarity=-0.039 Sum_probs=144.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 048321 380 VMVCNALIDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQAC 456 (641)
Q Consensus 380 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 456 (641)
...+..+...+...|++++|...|+++.+ .+...|..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 45667788889999999999999999876 366788999999999999999999999999862 33456788888899
Q ss_pred hccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHH
Q 048321 457 THTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEI 534 (641)
Q Consensus 457 ~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~ 534 (641)
...|++++|.+.++.+.+..+ .+...+..++..+.+.|++++|.+.++++. .+.+...+..+...+...|++++
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANP----INFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCc----HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHH
Confidence 999999999999999986543 567888999999999999999999999976 44467789999999999999999
Q ss_pred HHHHHHHhHccCCCCCcc
Q 048321 535 GEYVAYCLFKLEPHSAAP 552 (641)
Q Consensus 535 a~~~~~~~~~~~p~~~~~ 552 (641)
|...+++++++.|+++..
T Consensus 163 A~~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 163 ALPHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHHHcCCCchhh
Confidence 999999999999987544
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.31 E-value=4.6e-11 Score=120.21 Aligned_cols=232 Identities=10% Similarity=0.018 Sum_probs=166.4
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcC-CCCC----HHHHHHHHHHhcCcCchHHHHHHHHHHHHc--CC----CCchhHHH
Q 048321 316 MISGYAQKGDLDEALRLFFAMEAAG-ELPD----LVTVLSMISGCGQSGALELGKWFDNYACSG--GL----KDNVMVCN 384 (641)
Q Consensus 316 li~~~~~~g~~~~A~~~~~~m~~~~-~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~----~~~~~~~~ 384 (641)
....+...|++++|+..|++....- -.+| ..++..+...+...|+++.|...+....+. .. +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 4445666777777777777765420 0122 245566666677777777777777766652 11 11235677
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCCCh-hhHH
Q 048321 385 ALIDMYSKCGSIGDARELFYALPE-----KI----VVSWTTMIAGCALNGEFVEALDLFHQLMEL----DLRPNR-VTFL 450 (641)
Q Consensus 385 ~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~-~t~~ 450 (641)
.+...|...|++++|...|++..+ ++ ..++..+...|...|++++|+..|++..+. +..|+. .++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 788888899999999888877653 11 247888999999999999999999998872 222443 4788
Q ss_pred HHHHHHhccCChHHHHHHHHHHHhhhCCCCCCC-hhHHHHHHHHhhccCC---hHHHHHHHHhCCCCCC-hhHHHHHHHH
Q 048321 451 AVLQACTHTGFLEKGWAISIIQYDDKGISYNPE-LDHYSCMADLLGRKGK---LKEALDFVQSMPIKSD-AGIWGTLLCA 525 (641)
Q Consensus 451 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~-~~~~~~ll~~ 525 (641)
.+...+...|++++|...++...+.....-.|. ...+..+...|...|+ +++|+.++++....|+ ...+..+...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 888899999999999999998875332000122 2335778889999999 9999999999875444 3367778889
Q ss_pred HHHcCCHHHHHHHHHHhHccCC
Q 048321 526 CKIHLNIEIGEYVAYCLFKLEP 547 (641)
Q Consensus 526 ~~~~g~~~~a~~~~~~~~~~~p 547 (641)
|...|++++|...+++++++..
T Consensus 349 y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999987644
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.29 E-value=8.5e-11 Score=108.67 Aligned_cols=205 Identities=10% Similarity=-0.032 Sum_probs=161.2
Q ss_pred CCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHH
Q 048321 343 PDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KIVVSWTTMIA 419 (641)
Q Consensus 343 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~ 419 (641)
.|+..+......+...|++++|...++..++...+++...+..+..+|...|++++|...|++..+ .+...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 456778888888999999999999999999977437777777799999999999999999998765 35678999999
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCh--------hhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCC---hhHHH
Q 048321 420 GCALNGEFVEALDLFHQLMELDLRPNR--------VTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPE---LDHYS 488 (641)
Q Consensus 420 ~~~~~g~~~~A~~~~~~m~~~g~~p~~--------~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~---~~~~~ 488 (641)
.|...|++++|+..|++..+. .|+. ..+..+...+...|++++|...|+.+.+ +.|+ ...|.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~-----~~p~~~~~~~~~ 157 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD-----VTSKKWKTDALY 157 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-----SSCHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh-----cCCCcccHHHHH
Confidence 999999999999999999986 4553 3466677788899999999999999985 4465 56788
Q ss_pred HHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHH
Q 048321 489 CMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYA 561 (641)
Q Consensus 489 ~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 561 (641)
.+..+|...|+. .++++. ...+...+.... ....+.+++|+..++++++++|+++.....+..+..
T Consensus 158 ~l~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 158 SLGVLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 888888766653 223322 122333343332 345677999999999999999999887777776654
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.26 E-value=1.8e-09 Score=108.01 Aligned_cols=257 Identities=12% Similarity=-0.051 Sum_probs=152.5
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCCCHH----HHHHHHHHhcCcCchHHHHHHHHHHHHcC--C-CC--chhHHHHHHHHH
Q 048321 320 YAQKGDLDEALRLFFAMEAAGELPDLV----TVLSMISGCGQSGALELGKWFDNYACSGG--L-KD--NVMVCNALIDMY 390 (641)
Q Consensus 320 ~~~~g~~~~A~~~~~~m~~~~~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~-~~--~~~~~~~li~~~ 390 (641)
+...|++++|...+++........+.. .+..+...+...|+++.|...+....... . .+ ...++..+...+
T Consensus 24 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 103 (373)
T 1hz4_A 24 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL 103 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 334455555555555444432111111 22233334444555555555555444310 0 11 112344556666
Q ss_pred HhcCCHHHHHHHHhhCCC-------C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC--C-C-hhhHHHHHHH
Q 048321 391 SKCGSIGDARELFYALPE-------K----IVVSWTTMIAGCALNGEFVEALDLFHQLMELDLR--P-N-RVTFLAVLQA 455 (641)
Q Consensus 391 ~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p-~-~~t~~~ll~~ 455 (641)
...|++++|...+++... + ...++..+...+...|++++|...+++....... | . ..++..+...
T Consensus 104 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 183 (373)
T 1hz4_A 104 FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQC 183 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHH
Confidence 777777777776665432 1 1234556677778888888888888887764221 1 1 1355666667
Q ss_pred HhccCChHHHHHHHHHHHhhhCCCCCCChhHHH-----HHHHHhhccCChHHHHHHHHhCC-CCCC-----hhHHHHHHH
Q 048321 456 CTHTGFLEKGWAISIIQYDDKGISYNPELDHYS-----CMADLLGRKGKLKEALDFVQSMP-IKSD-----AGIWGTLLC 524 (641)
Q Consensus 456 ~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~-~~p~-----~~~~~~ll~ 524 (641)
+...|++++|...++....... -......+. ..+..+...|++++|...+++.. ..|. ...+..+..
T Consensus 184 ~~~~g~~~~A~~~l~~a~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~ 261 (373)
T 1hz4_A 184 SLARGDLDNARSQLNRLENLLG--NGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 261 (373)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHT--TSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHh--ccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHH
Confidence 7888888888888888775432 111111222 23345778899999998888875 2221 224566777
Q ss_pred HHHHcCCHHHHHHHHHHhHccCCCC------CccHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048321 525 ACKIHLNIEIGEYVAYCLFKLEPHS------AAPYVEMANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 525 ~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
.+...|++++|...++++++..+.. ...+..++.+|...|++++|.+.+++...
T Consensus 262 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 262 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 7888899999999988887654321 13666778889999999999988877654
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.25 E-value=8.9e-11 Score=117.84 Aligned_cols=221 Identities=10% Similarity=-0.031 Sum_probs=136.8
Q ss_pred hcCcCchHHHHHHHHHHHHcC--CC---CchhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----C-----ChhHHHHHHH
Q 048321 355 CGQSGALELGKWFDNYACSGG--LK---DNVMVCNALIDMYSKCGSIGDARELFYALPE-----K-----IVVSWTTMIA 419 (641)
Q Consensus 355 ~~~~~~~~~a~~~~~~~~~~~--~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~-----~~~~~~~li~ 419 (641)
+...|++++|...+..+.+.. .. ....++..+...|...|+++.|...+++..+ + ...+++.+..
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 190 (378)
T 3q15_A 111 EFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAG 190 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence 445666666666666665421 11 1234556666777777777776666655432 1 1346677777
Q ss_pred HHHHcCChHHHHHHHHHHHHcCC-CCC----hhhHHHHHHHHhccCChHHHHHHHHHHHhhh---CCCCCCChhHHHHHH
Q 048321 420 GCALNGEFVEALDLFHQLMELDL-RPN----RVTFLAVLQACTHTGFLEKGWAISIIQYDDK---GISYNPELDHYSCMA 491 (641)
Q Consensus 420 ~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~p~~~~~~~l~ 491 (641)
.|...|++++|++.|++..+..- .++ ..++..+...|...|++++|...|+...+.. + .+.....+..++
T Consensus 191 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~la 268 (378)
T 3q15_A 191 NYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKV--PDLLPKVLFGLS 268 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHC--GGGHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhC--ChhHHHHHHHHH
Confidence 77788888888887777665210 111 1256666677778888888888887777411 1 112355677777
Q ss_pred HHhhccCChHHHHHHHHhCC----C--CCC-hhHHHHHHHHHHHcCC---HHHHHHHHHHhHccCCCCCccHHHHHHHHH
Q 048321 492 DLLGRKGKLKEALDFVQSMP----I--KSD-AGIWGTLLCACKIHLN---IEIGEYVAYCLFKLEPHSAAPYVEMANKYA 561 (641)
Q Consensus 492 ~~~~~~g~~~~A~~~~~~~~----~--~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 561 (641)
.+|.+.|++++|...+++.. . .|. ...+..+...+...++ .++|...+++. ...|.....+..++.+|.
T Consensus 269 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~ 347 (378)
T 3q15_A 269 WTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFE 347 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHH
Confidence 88888888888888877753 1 122 2234444445556666 66666666652 222333456677888888
Q ss_pred hcCCchHHHHHHHHHHh
Q 048321 562 LGGRWDGVANIRTMMKR 578 (641)
Q Consensus 562 ~~g~~~eA~~~~~~m~~ 578 (641)
..|++++|.+.+++..+
T Consensus 348 ~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 348 SSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 88888888888877643
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.17 E-value=8.6e-10 Score=104.22 Aligned_cols=203 Identities=10% Similarity=-0.043 Sum_probs=121.3
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-C---hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh----hh
Q 048321 379 NVMVCNALIDMYSKCGSIGDARELFYALPE--K-I---VVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNR----VT 448 (641)
Q Consensus 379 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t 448 (641)
+...+..+...+.+.|++++|...|+.+.. | + ...+..+..+|.+.|++++|+..|++..+. .|+. ..
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 91 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQI--YQIDPRVPQA 91 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH--CCCCchhHHH
Confidence 344444555555666666666666665543 2 2 345555555566666666666666666554 2321 13
Q ss_pred HHHHHHHHhc--------cCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCCCCCChhHHH
Q 048321 449 FLAVLQACTH--------TGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWG 520 (641)
Q Consensus 449 ~~~ll~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~ 520 (641)
+..+..++.. .|++++|...|+.+.+..+ .+.....++.......+.+ ...+.
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p----~~~~~~~a~~~~~~~~~~~---------------~~~~~ 152 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYP----NHELVDDATQKIRELRAKL---------------ARKQY 152 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCT----TCTTHHHHHHHHHHHHHHH---------------HHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCc----CchhHHHHHHHHHHHHHHH---------------HHHHH
Confidence 3344444444 5566666666666554332 1111111111110000000 01235
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhHccCCCCC---ccHHHHHHHHHhc----------CCchHHHHHHHHHHhCCCccCCce
Q 048321 521 TLLCACKIHLNIEIGEYVAYCLFKLEPHSA---APYVEMANKYALG----------GRWDGVANIRTMMKRNQVKKFPGQ 587 (641)
Q Consensus 521 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~eA~~~~~~m~~~~~~~~~~~ 587 (641)
.+...+...|++++|+..++++++..|+++ ..+..++.+|... |++++|.+.++++.+...
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p------ 226 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP------ 226 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT------
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC------
Confidence 667888999999999999999999999854 4788999999977 999999999998876421
Q ss_pred eEEEECCEEEEEeeCCCCCCChhcHHHHHHHHHHHHHH
Q 048321 588 SLFHINGKTCTFTAEDRYHAESELTYPVLDCLALHSRE 625 (641)
Q Consensus 588 s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 625 (641)
.+|........+..+..++.+
T Consensus 227 -----------------~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 227 -----------------DSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp -----------------TCTHHHHHHHHHHHHHHHHHH
T ss_pred -----------------CChHHHHHHHHHHHHHHHHHH
Confidence 255556677777777776654
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.15 E-value=6.3e-09 Score=104.27 Aligned_cols=228 Identities=8% Similarity=0.006 Sum_probs=164.5
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcC-CCCC----HHHHHHHHHHhcCcCchHHHHHHHHHHHHc--CC---C-CchhHHH
Q 048321 316 MISGYAQKGDLDEALRLFFAMEAAG-ELPD----LVTVLSMISGCGQSGALELGKWFDNYACSG--GL---K-DNVMVCN 384 (641)
Q Consensus 316 li~~~~~~g~~~~A~~~~~~m~~~~-~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~---~-~~~~~~~ 384 (641)
....+...|++++|+..|++..... -.++ ..++..+...+...|+++.|...+....+. .. . ....+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 3445567777888888777776431 1122 235566666777778888887777776652 11 1 1245677
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHH-----cCCCCC-hhhH
Q 048321 385 ALIDMYSKCGSIGDARELFYALPE-----KI----VVSWTTMIAGCALNGEFVEALDLFHQLME-----LDLRPN-RVTF 449 (641)
Q Consensus 385 ~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~-~~t~ 449 (641)
.+...|...|++++|.+.|++..+ .+ ..++..+...|...|++++|+..|++..+ . .|+ ..++
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~ 264 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKV--PDLLPKVL 264 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHC--GGGHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhC--ChhHHHHH
Confidence 788888889999988888876543 12 24778888899999999999999999887 3 333 4477
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCC-hhHHHHHHHHhhccCC---hHHHHHHHHhCCCCCCh-hHHHHHHH
Q 048321 450 LAVLQACTHTGFLEKGWAISIIQYDDKGISYNPE-LDHYSCMADLLGRKGK---LKEALDFVQSMPIKSDA-GIWGTLLC 524 (641)
Q Consensus 450 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~~-~~~~~ll~ 524 (641)
..+...+.+.|++++|...++...+.....-.|. ...+..+...+...|+ +++|+..+++....|+. ..+..+..
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~ 344 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAA 344 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 7888899999999999999999886443111122 3456777788888888 99999999997644433 35667888
Q ss_pred HHHHcCCHHHHHHHHHHhHcc
Q 048321 525 ACKIHLNIEIGEYVAYCLFKL 545 (641)
Q Consensus 525 ~~~~~g~~~~a~~~~~~~~~~ 545 (641)
.+...|++++|...+++++++
T Consensus 345 ~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 345 VFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHH
Confidence 899999999999999988764
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.14 E-value=2e-10 Score=109.70 Aligned_cols=198 Identities=14% Similarity=0.135 Sum_probs=109.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHc------CC
Q 048321 380 VMVCNALIDMYSKCGSIGDARELFYALPE-----------KIVVSWTTMIAGCALNGEFVEALDLFHQLMEL------DL 442 (641)
Q Consensus 380 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~ 442 (641)
..++..+...|...|++++|...|++... ....+|..+...|...|++++|++.|+++... .-
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 34445555555555555555555554331 12345666666666667777777666666543 11
Q ss_pred CCC-hhhHHHHHHHHhccCChHHHHHHHHHHHhhh----CCCCCC-ChhHHHHHHHHhhccCChHHHHHHHHhCC-----
Q 048321 443 RPN-RVTFLAVLQACTHTGFLEKGWAISIIQYDDK----GISYNP-ELDHYSCMADLLGRKGKLKEALDFVQSMP----- 511 (641)
Q Consensus 443 ~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----- 511 (641)
.|+ ..++..+...+...|++++|...|+.+.+.. +. -.| ....+..++.+|.+.|++++|..+++++.
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 201 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGP-DDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE 201 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 122 2355666667777777777777777766431 10 022 24456667777777777777777776643
Q ss_pred -----CCCC-hhHHHHHHHHHHHcC------CHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048321 512 -----IKSD-AGIWGTLLCACKIHL------NIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 512 -----~~p~-~~~~~~ll~~~~~~g------~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
..+. ...|..+.......+ .+..+...++......|..+..+..++.+|...|++++|.+++++..+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 202 KEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1222 223333333333222 233333334433344455566788889999999999999998887664
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=3e-10 Score=122.12 Aligned_cols=164 Identities=13% Similarity=0.111 Sum_probs=137.9
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh-hhHHHHH
Q 048321 378 DNVMVCNALIDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNR-VTFLAVL 453 (641)
Q Consensus 378 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll 453 (641)
.+...++.|...|.+.|++++|.+.|++..+ .+..+|+.+...|.+.|++++|++.|++..+. .|+. ..+..+.
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg 84 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 3467788888899999999999999988764 45778999999999999999999999999886 5664 4888888
Q ss_pred HHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCC-ChhHHHHHHHHHHHcCC
Q 048321 454 QACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHLN 531 (641)
Q Consensus 454 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~ 531 (641)
.++...|++++|.+.|+++.+..+ -+...|..+..+|.+.|++++|++.|++.. ..| +...|..+...+...|+
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P----~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINP----AFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhccc
Confidence 899999999999999999986332 347789999999999999999999999876 455 56688999999999999
Q ss_pred HHHHHHHHHHhHccCC
Q 048321 532 IEIGEYVAYCLFKLEP 547 (641)
Q Consensus 532 ~~~a~~~~~~~~~~~p 547 (641)
+++|++.+++++++.|
T Consensus 161 ~~~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 161 WTDYDERMKKLVSIVA 176 (723)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCh
Confidence 9999999998887654
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=1.1e-10 Score=99.74 Aligned_cols=140 Identities=6% Similarity=-0.092 Sum_probs=101.7
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccC
Q 048321 420 GCALNGEFVEALDLFHQLMELDLRPNR-VTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKG 498 (641)
Q Consensus 420 ~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 498 (641)
.+...|++++|+..+++.... .|+. ..+..+...|...|++++|.+.|+...+..+ -+...|..+..+|.+.|
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p----~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE----RDPKAHRFLGLLYELEE 79 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTT
T ss_pred HHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcC
Confidence 344456777777777776543 3433 3555666777778888888888887775332 34677777888888888
Q ss_pred ChHHHHHHHHhCC-CCC-ChhHHHHHHHHHHHcCCHHHHHHH-HHHhHccCCCCCccHHHHHHHHHhcCC
Q 048321 499 KLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHLNIEIGEYV-AYCLFKLEPHSAAPYVEMANKYALGGR 565 (641)
Q Consensus 499 ~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~ 565 (641)
++++|+..|++.. ..| ++.+|..+...+...|+.++|.+. ++++++++|+++..|...+.++...|+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 8888888887765 344 566788888888888888766554 588999999999999988888888875
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.08 E-value=4.6e-09 Score=96.64 Aligned_cols=179 Identities=9% Similarity=-0.041 Sum_probs=103.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCC--CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh----hHHH
Q 048321 382 VCNALIDMYSKCGSIGDARELFYALPE--KI----VVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRV----TFLA 451 (641)
Q Consensus 382 ~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ 451 (641)
.+..+...+.+.|++++|...|+.+.. |+ ...+..+..+|.+.|++++|+..|+++.+. .|+.. .+..
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHHH
Confidence 344455556666666666666666543 21 134555666666666666666666666654 34332 2222
Q ss_pred HHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCCCh-hHH----------
Q 048321 452 VLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKSDA-GIW---------- 519 (641)
Q Consensus 452 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~-~~~---------- 519 (641)
+..++...|. .. ...|..+...+...|++++|+..|+++. ..|+. ..+
T Consensus 84 ~g~~~~~~~~-----~~---------------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~ 143 (225)
T 2yhc_A 84 RGLTNMALDD-----SA---------------LQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLK 143 (225)
T ss_dssp HHHHHHHHHC----------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHhhhh-----hh---------------hhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHH
Confidence 2223322100 00 0000000111112344444444444433 22221 111
Q ss_pred -------HHHHHHHHHcCCHHHHHHHHHHhHccCCCCC---ccHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 048321 520 -------GTLLCACKIHLNIEIGEYVAYCLFKLEPHSA---APYVEMANKYALGGRWDGVANIRTMMKRNQVK 582 (641)
Q Consensus 520 -------~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~eA~~~~~~m~~~~~~ 582 (641)
..+...+...|+++.|+..++++++..|+++ ..+..++.+|.+.|++++|.+.++.+...+..
T Consensus 144 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 144 DRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 3455678889999999999999999999875 57899999999999999999999998887643
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.07 E-value=9.6e-09 Score=96.68 Aligned_cols=174 Identities=9% Similarity=-0.027 Sum_probs=100.2
Q ss_pred HHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHhccCChHHHHHHHHHHHh
Q 048321 399 ARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNR-VTFLAVLQACTHTGFLEKGWAISIIQYD 474 (641)
Q Consensus 399 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 474 (641)
|...|++... ++..++..+..++...|++++|++++.+.+..|-.++. ..+..++..+.+.|+.+.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4455554432 33444455666666667777777777666554321222 3555555666677777777777776653
Q ss_pred hhCCCCCC-----ChhHHHHHHHH--hhc--cCChHHHHHHHHhCC-CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHc
Q 048321 475 DKGISYNP-----ELDHYSCMADL--LGR--KGKLKEALDFVQSMP-IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFK 544 (641)
Q Consensus 475 ~~~~~~~p-----~~~~~~~l~~~--~~~--~g~~~~A~~~~~~~~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 544 (641)
..| +-.+...++.+ ... .+++++|..+|+++. ..|+..+-..++.++.+.|++++|+..++.+.+
T Consensus 165 -----~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 165 -----AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp -----HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred -----cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 335 23333333333 222 236777777777765 334422333344466677777777777776666
Q ss_pred c----------CCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 545 L----------EPHSAAPYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 545 ~----------~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
. +|+++.++..++.+....|+ +|.++++++.+.
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 5 36667777666666666676 677777777654
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.07 E-value=1.5e-09 Score=104.29 Aligned_cols=228 Identities=10% Similarity=-0.014 Sum_probs=157.3
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhcC--cCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhh
Q 048321 328 EALRLFFAMEAAGELPDLVTVLSMISGCGQ--SGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYA 405 (641)
Q Consensus 328 ~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 405 (641)
+|.+++.+..+. .++....| .++ .. .+++++|...+... ...|...|++++|...|.+
T Consensus 3 ~a~~~~~~a~k~-~~~~~~~~-~~~---~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~ 62 (292)
T 1qqe_A 3 DPVELLKRAEKK-GVPSSGFM-KLF---SGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLK 62 (292)
T ss_dssp CHHHHHHHHHHH-SSCCCTHH-HHH---SCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHH
T ss_pred cHHHHHHHHHHH-hCcCCCcc-hhc---CCCCCccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHH
Confidence 466666666554 22221112 222 22 22478887777665 3467788999988888876
Q ss_pred CCC-------C--ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCC---CCC--hhhHHHHHHHHhcc-CChHHHHHHHH
Q 048321 406 LPE-------K--IVVSWTTMIAGCALNGEFVEALDLFHQLMELDL---RPN--RVTFLAVLQACTHT-GFLEKGWAISI 470 (641)
Q Consensus 406 ~~~-------~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~t~~~ll~~~~~~-g~~~~a~~~~~ 470 (641)
... + ...+|+.+...|...|++++|+..|++..+... .+. ..++..+...|... |++++|...|+
T Consensus 63 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~ 142 (292)
T 1qqe_A 63 AADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYE 142 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 543 1 146888999999999999999999998876311 111 23777888899996 99999999999
Q ss_pred HHHhhhCCCCCCC----hhHHHHHHHHhhccCChHHHHHHHHhCC-CCCChh--------HHHHHHHHHHHcCCHHHHHH
Q 048321 471 IQYDDKGISYNPE----LDHYSCMADLLGRKGKLKEALDFVQSMP-IKSDAG--------IWGTLLCACKIHLNIEIGEY 537 (641)
Q Consensus 471 ~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~--------~~~~ll~~~~~~g~~~~a~~ 537 (641)
+..+..+ -..+ ..++..++..|.+.|++++|+..|++.. ..|+.. .|..+...+...|+++.|+.
T Consensus 143 ~Al~~~~--~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 220 (292)
T 1qqe_A 143 LAGEWYA--QDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAAR 220 (292)
T ss_dssp HHHHHHH--HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHH--hCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9986432 1111 3568889999999999999999999865 333221 46777778889999999999
Q ss_pred HHHHhHccCCCCCcc-----HHHHHHHHH--hcCCchHHHHHHHHHH
Q 048321 538 VAYCLFKLEPHSAAP-----YVEMANKYA--LGGRWDGVANIRTMMK 577 (641)
Q Consensus 538 ~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~~eA~~~~~~m~ 577 (641)
.++++++++|+.... +..++..|. ..+++++|.+.++.+.
T Consensus 221 ~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 221 TLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 999999999986553 334556664 5677888888875543
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.07 E-value=1.9e-09 Score=89.71 Aligned_cols=129 Identities=16% Similarity=0.210 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHH
Q 048321 413 SWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMAD 492 (641)
Q Consensus 413 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~ 492 (641)
.|..+...+...|++++|+.+|+++.+.+ +.+...+..+...+...|++++|...++.+...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----------------- 64 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL----------------- 64 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH-----------------
Confidence 34555555555566666666665555432 122334444444555555555555555555432
Q ss_pred HhhccCChHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHH
Q 048321 493 LLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANI 572 (641)
Q Consensus 493 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~ 572 (641)
.+.+...|..+...+...|++++|...++++++..|+++..+..++.+|...|++++|.+.
T Consensus 65 -------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 125 (136)
T 2fo7_A 65 -------------------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEY 125 (136)
T ss_dssp -------------------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred -------------------CCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHH
Confidence 1223344555555555666666666666666666666566666666666666666666666
Q ss_pred HHHHHh
Q 048321 573 RTMMKR 578 (641)
Q Consensus 573 ~~~m~~ 578 (641)
++++.+
T Consensus 126 ~~~~~~ 131 (136)
T 2fo7_A 126 YQKALE 131 (136)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 665544
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=2.9e-10 Score=97.07 Aligned_cols=121 Identities=12% Similarity=-0.032 Sum_probs=101.4
Q ss_pred HHHHhccCChHHHHHHHHHHHhhhCCCCCCC-hhHHHHHHHHhhccCChHHHHHHHHhCC-CCC-ChhHHHHHHHHHHHc
Q 048321 453 LQACTHTGFLEKGWAISIIQYDDKGISYNPE-LDHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIH 529 (641)
Q Consensus 453 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~ 529 (641)
...+...|++++|+..++.... ..|+ ...+-.+..+|.+.|++++|++.|++.. ..| ++.+|..+...+...
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~-----~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 78 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTP-----SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELE 78 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSC-----SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHcChHHHHHHHHHHhcc-----cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3456677899999999988774 2233 4456678999999999999999999976 444 677999999999999
Q ss_pred CCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHH-HHHHHh
Q 048321 530 LNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANI-RTMMKR 578 (641)
Q Consensus 530 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~-~~~m~~ 578 (641)
|++++|+..++++++++|+++..|..++.+|.+.|++++|.+. +++..+
T Consensus 79 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 79 ENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999887765 566654
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.06 E-value=3.8e-08 Score=98.36 Aligned_cols=192 Identities=14% Similarity=-0.015 Sum_probs=93.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCC-------CC----CcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCC--C--CHH
Q 048321 282 INTLISMYSKCGDIDSARVLFDGIC-------DR----TRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEL--P--DLV 346 (641)
Q Consensus 282 ~~~li~~~~~~g~~~~A~~~~~~~~-------~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p--~~~ 346 (641)
+..+...+...|++++|...+++.. .+ ....+..+...+...|++++|...+++....... + ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 3445555555666666655554431 11 1123444555566666666666666665542211 1 123
Q ss_pred HHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCc-hhHHH-----HHHHHHHhcCCHHHHHHHHhhCCCCC-------hhH
Q 048321 347 TVLSMISGCGQSGALELGKWFDNYACSGGLKDN-VMVCN-----ALIDMYSKCGSIGDARELFYALPEKI-------VVS 413 (641)
Q Consensus 347 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~-----~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~ 413 (641)
++..+...+...|++++|...++......-.++ ...+. ..+..+...|++++|...++.....+ ...
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 444455555556666666666665554211111 01111 22333556667777766666655421 113
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHc----CCCCChh-hHHHHHHHHhccCChHHHHHHHHHHH
Q 048321 414 WTTMIAGCALNGEFVEALDLFHQLMEL----DLRPNRV-TFLAVLQACTHTGFLEKGWAISIIQY 473 (641)
Q Consensus 414 ~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~ 473 (641)
+..+...+...|++++|...+++.... |..++.. .+..+..++...|+.++|...++...
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 445556666666666666666665432 1111111 33333445555566666665555554
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.05 E-value=2e-09 Score=101.63 Aligned_cols=204 Identities=10% Similarity=-0.059 Sum_probs=148.4
Q ss_pred CCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCc---hhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C----ChhH
Q 048321 343 PDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDN---VMVCNALIDMYSKCGSIGDARELFYALPE--K----IVVS 413 (641)
Q Consensus 343 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~----~~~~ 413 (641)
.+...+......+...|++++|...++.+++.. +.+ ..++..+..+|.+.|++++|...|+...+ | ...+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 345667777778889999999999999999864 223 67888899999999999999999998765 2 1346
Q ss_pred HHHHHHHHHH--------cCChHHHHHHHHHHHHcCCCCChh-hHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCCh
Q 048321 414 WTTMIAGCAL--------NGEFVEALDLFHQLMELDLRPNRV-TFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPEL 484 (641)
Q Consensus 414 ~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~ 484 (641)
+..+..++.. .|++++|+..|+++.+. .|+.. ....+ ..+...... ..
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~--------------~~~~~~~~~-------~~ 148 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDAT--------------QKIRELRAK-------LA 148 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHH--------------HHHHHHHHH-------HH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHH--------------HHHHHHHHH-------HH
Confidence 7778888888 99999999999999986 56654 22221 111111110 11
Q ss_pred hHHHHHHHHhhccCChHHHHHHHHhCC-CCCC----hhHHHHHHHHHHHc----------CCHHHHHHHHHHhHccCCCC
Q 048321 485 DHYSCMADLLGRKGKLKEALDFVQSMP-IKSD----AGIWGTLLCACKIH----------LNIEIGEYVAYCLFKLEPHS 549 (641)
Q Consensus 485 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~ 549 (641)
..+..++..|.+.|++++|+..|+++. ..|+ ...+..+..++... |++++|+..++++++..|++
T Consensus 149 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 228 (261)
T 3qky_A 149 RKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDS 228 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCC
Confidence 235566788888899999998888865 3333 33666677777655 89999999999999999987
Q ss_pred Cc---cHHHHHHHHHhcCCchHHH
Q 048321 550 AA---PYVEMANKYALGGRWDGVA 570 (641)
Q Consensus 550 ~~---~~~~l~~~~~~~g~~~eA~ 570 (641)
+. ....+..++.+.|+++++.
T Consensus 229 ~~~~~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 229 PLLRTAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTCT
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhh
Confidence 53 4556666666666655443
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.05 E-value=2.4e-09 Score=102.91 Aligned_cols=217 Identities=11% Similarity=-0.037 Sum_probs=131.4
Q ss_pred CHHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHc----CCCCC-HHHHHHHHHHhcCcCchHHHHHHH
Q 048321 294 DIDSARVLFDGICDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAA----GELPD-LVTVLSMISGCGQSGALELGKWFD 368 (641)
Q Consensus 294 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~ 368 (641)
++++|...|+.. ...|...|++++|...|.+.... |-.++ ..+|..+...+...|++++|...+
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 477777766543 66677788888888877766542 11111 234444555555555555555554
Q ss_pred HHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHc-CChHHHHHHHHHHHHcCCC-CC-
Q 048321 369 NYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKIVVSWTTMIAGCALN-GEFVEALDLFHQLMELDLR-PN- 445 (641)
Q Consensus 369 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~-p~- 445 (641)
+..++. +...|+...+ ..+|+.+...|... |++++|+..|++..+.... .+
T Consensus 101 ~~Al~l---------------~~~~g~~~~~-----------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~ 154 (292)
T 1qqe_A 101 ENAIQI---------------FTHRGQFRRG-----------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV 154 (292)
T ss_dssp HHHHHH---------------HHHTTCHHHH-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHH---------------HHHcCCHHHH-----------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh
Confidence 444331 1111222111 23567777778875 8888888888887763110 01
Q ss_pred ---hhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCCh-----hHHHHHHHHhhccCChHHHHHHHHhCC-CCCCh
Q 048321 446 ---RVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPEL-----DHYSCMADLLGRKGKLKEALDFVQSMP-IKSDA 516 (641)
Q Consensus 446 ---~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~ 516 (641)
..++..+...+...|++++|...|+.+.+..+ -.+.. ..|..++.++...|++++|+..+++.. ..|+.
T Consensus 155 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 232 (292)
T 1qqe_A 155 ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSM--GNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNF 232 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS--SCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh--cCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 23567777788888888888888888885333 11221 156677788888888888888888865 44432
Q ss_pred h------HHHHHHHHHH--HcCCHHHHHHHHHHhHccCCCC
Q 048321 517 G------IWGTLLCACK--IHLNIEIGEYVAYCLFKLEPHS 549 (641)
Q Consensus 517 ~------~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~p~~ 549 (641)
. .+..++.++. ..+++++|+..++++..++|.+
T Consensus 233 ~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 233 ADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp -----HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 2 2344555554 3467888888888888888864
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.04 E-value=6.6e-09 Score=86.39 Aligned_cols=124 Identities=16% Similarity=0.265 Sum_probs=96.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhc
Q 048321 382 VCNALIDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTH 458 (641)
Q Consensus 382 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 458 (641)
.+..+...|...|++++|..+|+++.+ .+...|..+...+...|++++|...|+++...+ +.+...+..+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 567788999999999999999998754 467788999999999999999999999999863 3345577778888889
Q ss_pred cCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhC
Q 048321 459 TGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSM 510 (641)
Q Consensus 459 ~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 510 (641)
.|++++|.+.++.+.+..+ .+...+..++..+.+.|++++|...++++
T Consensus 82 ~~~~~~A~~~~~~~~~~~~----~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 129 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDP----RSAEAWYNLGNAYYKQGDYDEAIEYYQKA 129 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCC----CChHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 9999999999988885322 34555556666666666666666665553
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.04 E-value=8.1e-10 Score=119.41 Aligned_cols=147 Identities=15% Similarity=-0.086 Sum_probs=69.7
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHH
Q 048321 411 VVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNR-VTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSC 489 (641)
Q Consensus 411 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~ 489 (641)
...|..+...+...|++++|+..|+++.+. .|+. ..+..+..++...|++++|...|+++.+..+ .+...|..
T Consensus 433 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P----~~~~~~~~ 506 (681)
T 2pzi_A 433 VELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFP----GELAPKLA 506 (681)
T ss_dssp SHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST----TCSHHHHH
T ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CChHHHHH
Confidence 344444455555555555555555555543 2322 2444444445555555555555555543211 22444445
Q ss_pred HHHHhhccCChHHHHHHHHhCC-CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcC
Q 048321 490 MADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGG 564 (641)
Q Consensus 490 l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 564 (641)
+..+|.+.|++++ ++.|++.. ..| +...|..+..++...|++++|+..++++++++|+++.++..++.+|...|
T Consensus 507 lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 507 LAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC---
T ss_pred HHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccC
Confidence 5555555555555 55554443 222 33445555555555555555555555555555555555555555554433
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=3.8e-09 Score=101.16 Aligned_cols=173 Identities=11% Similarity=-0.029 Sum_probs=135.7
Q ss_pred HHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHhccCChHHHHHHHHHHHhhh
Q 048321 398 DARELFYALPEKIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNR-VTFLAVLQACTHTGFLEKGWAISIIQYDDK 476 (641)
Q Consensus 398 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 476 (641)
.....+......+...+..+...+...|++++|+..|++..+. .|+. ..+..+...+...|++++|...++.+..
T Consensus 104 ~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~-- 179 (287)
T 3qou_A 104 AIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL-- 179 (287)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG--
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch--
Confidence 3334444444445566777788888999999999999999886 5655 4777778889999999999999998874
Q ss_pred CCCCCCChhHHHHH-HHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCC--Cc
Q 048321 477 GISYNPELDHYSCM-ADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHS--AA 551 (641)
Q Consensus 477 ~~~~~p~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~ 551 (641)
..|+....... ...+.+.|+.++|+..+++.. .+.+...+..+...+...|++++|+..++++++.+|++ ..
T Consensus 180 ---~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~ 256 (287)
T 3qou_A 180 ---QDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQ 256 (287)
T ss_dssp ---GGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGH
T ss_pred ---hhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccch
Confidence 33554433333 234667788888888888865 44467789999999999999999999999999999987 78
Q ss_pred cHHHHHHHHHhcCCchHHHHHHHHHH
Q 048321 552 PYVEMANKYALGGRWDGVANIRTMMK 577 (641)
Q Consensus 552 ~~~~l~~~~~~~g~~~eA~~~~~~m~ 577 (641)
.+..++.+|...|+.++|...+++..
T Consensus 257 a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 257 TRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 89999999999999999988776543
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.99 E-value=2.4e-08 Score=93.98 Aligned_cols=238 Identities=10% Similarity=-0.049 Sum_probs=157.5
Q ss_pred hcCCHHHHHHHHhcCCCCCcc-hHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHH
Q 048321 291 KCGDIDSARVLFDGICDRTRV-SWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDN 369 (641)
Q Consensus 291 ~~g~~~~A~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 369 (641)
-.|.+..++.-...+.+.+.. .-.-+.++|...|++... ..-.|....+..+...+ ..+ +...++
T Consensus 25 y~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~----a~~~l~ 90 (310)
T 3mv2_B 25 YTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK----NIEELE 90 (310)
T ss_dssp TTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----CCHHHH
T ss_pred HhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----HHHHHH
Confidence 346666666655555332222 222244667777766531 11234433333333332 222 556666
Q ss_pred HHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 048321 370 YACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE-----KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRP 444 (641)
Q Consensus 370 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 444 (641)
.....+ .++..+...+..+|...|++++|++++.+... .+...+..++..+.+.|+.+.|.+.+++|.+. .|
T Consensus 91 ~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~ 167 (310)
T 3mv2_B 91 NLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IE 167 (310)
T ss_dssp HTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SC
T ss_pred HHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--Cc
Confidence 666554 44555556788888999999999999988743 24567778888999999999999999999875 67
Q ss_pred -----ChhhHHHHHHH--HhccC--ChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCCC---
Q 048321 445 -----NRVTFLAVLQA--CTHTG--FLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMPI--- 512 (641)
Q Consensus 445 -----~~~t~~~ll~~--~~~~g--~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--- 512 (641)
+..+...+..+ ....| ++.+|..+|+++.+.+ |+......+..++.+.|++++|.+.++.+..
T Consensus 168 d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~-----p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p 242 (310)
T 3mv2_B 168 DTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF-----PTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYY 242 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS-----CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHH
T ss_pred cccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC-----CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 35566666655 33334 8999999999987532 5433334444488899999999999876431
Q ss_pred --------CC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCcc
Q 048321 513 --------KS-DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAP 552 (641)
Q Consensus 513 --------~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 552 (641)
.| |+.+...++......|+ .|.++++++.+..|+++..
T Consensus 243 ~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 243 SVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp HTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred cccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 24 55566677766677787 8899999999999997543
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.98 E-value=1.2e-09 Score=92.66 Aligned_cols=100 Identities=12% Similarity=0.012 Sum_probs=89.0
Q ss_pred CCCC-hhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHH
Q 048321 480 YNPE-LDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEM 556 (641)
Q Consensus 480 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 556 (641)
+.|+ ...+..+...+.+.|++++|+..|++.. .+.++..|..+..++...|++++|+..++++++++|+++..|..+
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~l 110 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHT 110 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHH
Confidence 3444 5677888889999999999999999976 444678999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCchHHHHHHHHHHhC
Q 048321 557 ANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 557 ~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
+.+|...|++++|.+.+++..+.
T Consensus 111 g~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999988764
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.98 E-value=2.9e-09 Score=87.55 Aligned_cols=99 Identities=11% Similarity=0.076 Sum_probs=71.1
Q ss_pred CCCC-hhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHH
Q 048321 480 YNPE-LDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEM 556 (641)
Q Consensus 480 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 556 (641)
+.|+ ...+...+..|.+.|++++|++.|++.. .+.+...|..+..++...|++++|+..++++++++|+++..|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 3444 3455666777777777777777777754 333566777777777777777777777777777777777777777
Q ss_pred HHHHHhcCCchHHHHHHHHHHh
Q 048321 557 ANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 557 ~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
+.+|...|++++|.+.+++..+
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 7777777777777777777665
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.97 E-value=7.9e-09 Score=98.51 Aligned_cols=165 Identities=13% Similarity=0.075 Sum_probs=91.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCC-----------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHc------CCC
Q 048321 381 MVCNALIDMYSKCGSIGDARELFYALPE-----------KIVVSWTTMIAGCALNGEFVEALDLFHQLMEL------DLR 443 (641)
Q Consensus 381 ~~~~~li~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~ 443 (641)
.++..+...|...|++++|...|++... ....+|..+...|...|++++|+..|+++.+. +-.
T Consensus 86 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 165 (283)
T 3edt_B 86 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDD 165 (283)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3455555555555555555555554332 12345666667777777777777777777653 112
Q ss_pred CC-hhhHHHHHHHHhccCChHHHHHHHHHHHhhhC----CCCCCC-hhHHHHHHHHhhc------cCChHHHHHHHHhCC
Q 048321 444 PN-RVTFLAVLQACTHTGFLEKGWAISIIQYDDKG----ISYNPE-LDHYSCMADLLGR------KGKLKEALDFVQSMP 511 (641)
Q Consensus 444 p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----~~~~p~-~~~~~~l~~~~~~------~g~~~~A~~~~~~~~ 511 (641)
|+ ..++..+...+...|++++|...++.+.+... ....+. ...|..+...+.. ...+.++...++...
T Consensus 166 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (283)
T 3edt_B 166 PNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACK 245 (283)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcC
Confidence 22 23566667777788888888888877764311 001122 2233333333332 233455555555554
Q ss_pred -CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhHcc
Q 048321 512 -IKS-DAGIWGTLLCACKIHLNIEIGEYVAYCLFKL 545 (641)
Q Consensus 512 -~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 545 (641)
..| ...++..+...+...|++++|...+++++++
T Consensus 246 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 246 VDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 223 3447788888999999999999999998875
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.97 E-value=4.2e-09 Score=92.69 Aligned_cols=76 Identities=8% Similarity=-0.039 Sum_probs=60.9
Q ss_pred HHHHHHHhCC-CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCC--CccHHHHHHHHHhcCCchHHHHHHHHHH
Q 048321 502 EALDFVQSMP-IKS-DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHS--AAPYVEMANKYALGGRWDGVANIRTMMK 577 (641)
Q Consensus 502 ~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~eA~~~~~~m~ 577 (641)
+|+..+++.. ..| +...+..+...+...|++++|+..++++++.+|+. +..+..++.+|...|+.++|...+++..
T Consensus 92 ~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 92 PELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 3455555543 234 56788888888999999999999999999999875 4588999999999999999999887654
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.93 E-value=1.1e-06 Score=90.65 Aligned_cols=371 Identities=10% Similarity=-0.039 Sum_probs=203.5
Q ss_pred cC-ChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHHcCCCChhHHHHHHHHhHcCCC-hhHHH
Q 048321 119 MG-FLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISSYAKCDD-LKMAE 196 (641)
Q Consensus 119 ~g-~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~-~~~A~ 196 (641)
.| +++.|..+|+.+... .|. ++.+.+.++|+..+.. .|+...|...+....+.++ .+...
T Consensus 7 ~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~ 68 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLY 68 (493)
T ss_dssp -----CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTH
T ss_pred cCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHH
Confidence 45 366777777777652 343 7788888888887773 4677788777776666553 34455
Q ss_pred HHHhcccC----CCCCchhHHHHHHHHhc----CCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCchHHHHHHHH
Q 048321 197 LVFCGIEE----RLRTVVSWNSMVAGCTY----GDKFDDSLNFYRHMMYNGFRLDVTTVVSLLSSFVCPEALVQGRLVHS 268 (641)
Q Consensus 197 ~~~~~~~~----~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 268 (641)
.+|+.... .+.+...|...+.-+.. +++.+.+..+|++.+.. |.. .+..+-..| .
T Consensus 69 ~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~---P~~-~~~~lw~~Y-------------~ 131 (493)
T 2uy1_A 69 EVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT---PMG-SLSELWKDF-------------E 131 (493)
T ss_dssp HHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS---CCT-THHHHHHHH-------------H
T ss_pred HHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC---hhh-hHHHHHHHH-------------H
Confidence 56655443 13455667777665442 34566777777777762 211 111111111 1
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC----CCCCcchHHHHHHHHHhCCC-------hhHHHHHHHHHH
Q 048321 269 HGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGI----CDRTRVSWTAMISGYAQKGD-------LDEALRLFFAME 337 (641)
Q Consensus 269 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~ 337 (641)
.+.... +..+...++.-+. +.+..|..+++.+ ...+...|...+.--..++. .+.+..+|+++.
T Consensus 132 ~fE~~~---~~~~~~~~~~~~~--~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al 206 (493)
T 2uy1_A 132 NFELEL---NKITGKKIVGDTL--PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYIL 206 (493)
T ss_dssp HHHHHH---CHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHh---ccccHHHHHHHHh--HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHH
Confidence 111100 0111111111110 1222223222222 11133355555444322211 234567777777
Q ss_pred HcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHH-HHHHhhCC---------
Q 048321 338 AAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDA-RELFYALP--------- 407 (641)
Q Consensus 338 ~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~~~--------- 407 (641)
... +.+...|...+.-+...|+.+.|..++++.+.. +.+...+.. |....+.++. ..+.+...
T Consensus 207 ~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~ 279 (493)
T 2uy1_A 207 DSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEK 279 (493)
T ss_dssp HHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC---------
T ss_pred HcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhccchhhh
Confidence 643 334555665666666778888888888888877 444433332 2221111111 11111110
Q ss_pred -C--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHH-HhccCChHHHHHHHHHHHhhhCCCCCCC
Q 048321 408 -E--KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQA-CTHTGFLEKGWAISIIQYDDKGISYNPE 483 (641)
Q Consensus 408 -~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~~~p~ 483 (641)
. .....|-..+..+.+.+..+.|..+|+++ ... .++...|...... +...++.+.|+.+|+...+..+ -+
T Consensus 280 ~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~----~~ 353 (493)
T 2uy1_A 280 VFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHP----DS 353 (493)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT----TC
T ss_pred hcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC----CC
Confidence 0 11245777777777778889999999988 321 1222333321111 1123368999999999887654 23
Q ss_pred hhHHHHHHHHhhccCChHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHc
Q 048321 484 LDHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFK 544 (641)
Q Consensus 484 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 544 (641)
...+...++...+.|+.+.|..+|+.+. .....|...+..-..+|+.+.+..++++..+
T Consensus 354 ~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 354 TLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4556777888888899999999999974 3566888888888888998888888877763
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.92 E-value=1.5e-08 Score=91.85 Aligned_cols=127 Identities=9% Similarity=-0.022 Sum_probs=98.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHH
Q 048321 415 TTMIAGCALNGEFVEALDLFHQLMELDLRPNR-VTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADL 493 (641)
Q Consensus 415 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~ 493 (641)
+.+...|...|++++|+..|++..+. .|+. ..+..+...+...|++++|...|+++.+..+ .+...|..+..+
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P----~~~~a~~~lg~~ 131 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEA----DNLAANIFLGNY 131 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC----CCHHHHHHHHHH
Confidence 33888899999999999999999986 5654 5788888899999999999999999996433 457788888888
Q ss_pred hhccCC--hHHHHHHHHhCCCCCCh--hHHHHHHHHHHHcCCHHHHHHHHHHhHccCCC
Q 048321 494 LGRKGK--LKEALDFVQSMPIKSDA--GIWGTLLCACKIHLNIEIGEYVAYCLFKLEPH 548 (641)
Q Consensus 494 ~~~~g~--~~~A~~~~~~~~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 548 (641)
|...|. .+.+...++... .|++ ..+..+..++...|++++|+..+++++++.|+
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 132 YYLTAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 876654 455666776655 3333 34555566677789999999999999999997
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=3.4e-09 Score=90.03 Aligned_cols=97 Identities=9% Similarity=-0.054 Sum_probs=86.1
Q ss_pred ChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHH
Q 048321 483 ELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKY 560 (641)
Q Consensus 483 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 560 (641)
+...+..+...+.+.|++++|+..|++.. .+.+...|..+..+|...|++++|+..++++++++|+++..+..++.+|
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 35667778888999999999999999876 4447778999999999999999999999999999999999999999999
Q ss_pred HhcCCchHHHHHHHHHHhC
Q 048321 561 ALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 561 ~~~g~~~eA~~~~~~m~~~ 579 (641)
...|++++|.+.+++..+.
T Consensus 100 ~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999999887754
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.92 E-value=1.9e-08 Score=108.61 Aligned_cols=190 Identities=12% Similarity=-0.013 Sum_probs=149.9
Q ss_pred cCcCchHHHHHHHHHHH--------HcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHc
Q 048321 356 GQSGALELGKWFDNYAC--------SGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGCALN 424 (641)
Q Consensus 356 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 424 (641)
...|++++|...++... +.. +.+...+..+...|...|++++|...|++..+ .+...|..+...|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 67888999999998887 332 45677888899999999999999999998875 4678999999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHH
Q 048321 425 GEFVEALDLFHQLMELDLRPNR-VTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEA 503 (641)
Q Consensus 425 g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 503 (641)
|++++|++.|++..+. .|+. ..+..+..++...|++++ .+.|+++.+..+ .+...|..+..+|.+.|++++|
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P----~~~~a~~~lg~~~~~~g~~~~A 553 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTND----GVISAAFGLARARSAEGDRVGA 553 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC----chHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999986 5654 578888889999999999 999999986433 4577899999999999999999
Q ss_pred HHHHHhCC-CCCC-hhHHHHHHHHHHHcCC-----HHHHHHHHHHhHccCCCCCccH
Q 048321 504 LDFVQSMP-IKSD-AGIWGTLLCACKIHLN-----IEIGEYVAYCLFKLEPHSAAPY 553 (641)
Q Consensus 504 ~~~~~~~~-~~p~-~~~~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~p~~~~~~ 553 (641)
++.|+++. ..|+ ...|..+..++...++ .+...++.+.+..+.++++...
T Consensus 554 ~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~~ 610 (681)
T 2pzi_A 554 VRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRVL 610 (681)
T ss_dssp HHHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTHH
T ss_pred HHHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHHH
Confidence 99999987 6665 5577777777766554 3444555555555655554443
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=8.1e-09 Score=109.62 Aligned_cols=159 Identities=9% Similarity=-0.018 Sum_probs=125.3
Q ss_pred cCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHhccCChHHHHHH
Q 048321 393 CGSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPN-RVTFLAVLQACTHTGFLEKGWAI 468 (641)
Q Consensus 393 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~ 468 (641)
.|++++|.+.|++..+ .+...|..+...+...|++++|++.|++..+. .|+ ...+..+...+...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4788999999998876 35678999999999999999999999999986 565 45788888899999999999999
Q ss_pred HHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHc---CCHHHHHHHHHHhH
Q 048321 469 SIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIH---LNIEIGEYVAYCLF 543 (641)
Q Consensus 469 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~ 543 (641)
|++..+..+ .+...+..+..+|.+.|++++|.+.+++.. .+.+...+..+...+... |+.++|...+++++
T Consensus 80 ~~~al~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 80 LQQASDAAP----EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHhcCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 999996433 457889999999999999999999999976 344677888999999999 99999999999999
Q ss_pred ccCCCCCccHHHHH
Q 048321 544 KLEPHSAAPYVEMA 557 (641)
Q Consensus 544 ~~~p~~~~~~~~l~ 557 (641)
+.+|++...+..++
T Consensus 156 ~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 156 AQGVGAVEPFAFLS 169 (568)
T ss_dssp HHTCCCSCHHHHTT
T ss_pred hcCCcccChHHHhC
Confidence 99999888888777
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.91 E-value=6.7e-09 Score=85.36 Aligned_cols=115 Identities=10% Similarity=-0.075 Sum_probs=92.8
Q ss_pred CCCChh-hHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhH
Q 048321 442 LRPNRV-TFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGI 518 (641)
Q Consensus 442 ~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~ 518 (641)
+.|+.. .+......+.+.|++++|.+.|++..+..+ .+...|..+..+|.+.|++++|++.+++.. .+.+...
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a 83 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDP----ENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKG 83 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHH
Confidence 455543 566677788888888888888888885433 457788888888888899999988888865 3446778
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHH
Q 048321 519 WGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKY 560 (641)
Q Consensus 519 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 560 (641)
|..+..++...|++++|+..++++++++|+++.++..+++++
T Consensus 84 ~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 84 YIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 999999999999999999999999999999988888777653
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.90 E-value=3e-08 Score=95.99 Aligned_cols=220 Identities=9% Similarity=-0.029 Sum_probs=150.5
Q ss_pred CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 048321 323 KGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDAREL 402 (641)
Q Consensus 323 ~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 402 (641)
.|++++|.+++++..+... .. .+...++++.|...+..+ ...|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-~~---------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-TS---------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CC---------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc-cc---------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 4566777777776654311 10 011146666666666543 3456777888887777
Q ss_pred HhhCCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCC---CCC--hhhHHHHHHHHhccCChHHHHHH
Q 048321 403 FYALPE-----KI----VVSWTTMIAGCALNGEFVEALDLFHQLMELDL---RPN--RVTFLAVLQACTHTGFLEKGWAI 468 (641)
Q Consensus 403 ~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~t~~~ll~~~~~~g~~~~a~~~ 468 (641)
|.+... .+ ..+|+.+...|...|++++|+..|++..+.-. .|. ..++..+...|.. |++++|...
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 766543 11 34788888899999999999999998775311 122 2367777788888 999999999
Q ss_pred HHHHHhhhCCCCCC----ChhHHHHHHHHhhccCChHHHHHHHHhCC-C---CCC----hhHHHHHHHHHHHcCCHHHHH
Q 048321 469 SIIQYDDKGISYNP----ELDHYSCMADLLGRKGKLKEALDFVQSMP-I---KSD----AGIWGTLLCACKIHLNIEIGE 536 (641)
Q Consensus 469 ~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~---~p~----~~~~~~ll~~~~~~g~~~~a~ 536 (641)
|++..+... -.. ....+..+..+|.+.|++++|+..|++.. . .++ ...+..+...+...|++++|.
T Consensus 138 ~~~Al~~~~--~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 138 YQQAAAVFE--NEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHH--hCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999885432 111 14678888999999999999999999865 1 111 225566667777889999999
Q ss_pred HHHHHhHccCCCCCcc-----HHHHHHHHHhcCCchHHHHH
Q 048321 537 YVAYCLFKLEPHSAAP-----YVEMANKYALGGRWDGVANI 572 (641)
Q Consensus 537 ~~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~eA~~~ 572 (641)
..+++++ ++|+.... ...++..| ..|+.+++.++
T Consensus 216 ~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 216 KCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 9999999 99976544 33445545 56776666553
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.89 E-value=6e-08 Score=88.07 Aligned_cols=161 Identities=6% Similarity=-0.108 Sum_probs=128.5
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccC----ChHHHHHHHHHHHhhhCCCCCCCh
Q 048321 409 KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTG----FLEKGWAISIIQYDDKGISYNPEL 484 (641)
Q Consensus 409 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g----~~~~a~~~~~~~~~~~~~~~~p~~ 484 (641)
.++.++..+...|...+++++|++.|++..+.| +...+..+...|.. + ++++|...|+...+ . .+.
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~-~-----g~~ 85 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVE-A-----GSK 85 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH-T-----TCH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH-C-----CCH
Confidence 356677777777778888888888888888764 45566666666776 6 88999999998873 2 356
Q ss_pred hHHHHHHHHhhc----cCChHHHHHHHHhCC-CCCC---hhHHHHHHHHHHH----cCCHHHHHHHHHHhHccCCCCCcc
Q 048321 485 DHYSCMADLLGR----KGKLKEALDFVQSMP-IKSD---AGIWGTLLCACKI----HLNIEIGEYVAYCLFKLEPHSAAP 552 (641)
Q Consensus 485 ~~~~~l~~~~~~----~g~~~~A~~~~~~~~-~~p~---~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~ 552 (641)
..+..|..+|.. .+++++|+++|++.. ..|. +..+..|...|.. .++.++|...++++.++ |.++..
T Consensus 86 ~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a 164 (212)
T 3rjv_A 86 SGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYA 164 (212)
T ss_dssp HHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHH
T ss_pred HHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHH
Confidence 677778888877 889999999999877 3332 6788888888888 78999999999999998 667889
Q ss_pred HHHHHHHHHhc-C-----CchHHHHHHHHHHhCC
Q 048321 553 YVEMANKYALG-G-----RWDGVANIRTMMKRNQ 580 (641)
Q Consensus 553 ~~~l~~~~~~~-g-----~~~eA~~~~~~m~~~~ 580 (641)
+..|+.+|... | ++++|.+.+++..+.|
T Consensus 165 ~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 165 EYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 99999999864 3 8999999999988765
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=2.8e-08 Score=105.50 Aligned_cols=147 Identities=12% Similarity=-0.106 Sum_probs=97.3
Q ss_pred cCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHH
Q 048321 358 SGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLF 434 (641)
Q Consensus 358 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 434 (641)
.|++++|...++++.+.. +.+...+..+...|...|++++|.+.|++..+ .+...|..+...|...|++++|++.|
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 367778888887777654 44567777888888888888888888887654 35667888888888888888888888
Q ss_pred HHHHHcCCCCC-hhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhcc---CChHHHHHHHHhC
Q 048321 435 HQLMELDLRPN-RVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRK---GKLKEALDFVQSM 510 (641)
Q Consensus 435 ~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~ 510 (641)
++..+. .|+ ...+..+..++...|++++|.+.|+++.+..+ .+...+..+..++... |++++|.+.+++.
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP----EEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 888875 444 44777777788888888888888888875332 3466777788888888 8888888888776
Q ss_pred C
Q 048321 511 P 511 (641)
Q Consensus 511 ~ 511 (641)
.
T Consensus 155 l 155 (568)
T 2vsy_A 155 V 155 (568)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.87 E-value=2e-08 Score=90.96 Aligned_cols=157 Identities=12% Similarity=0.048 Sum_probs=118.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCChh-hHHH----------------HHHHHhccCChHHHHHHHHHHHhhhCC
Q 048321 416 TMIAGCALNGEFVEALDLFHQLMELDLRPNRV-TFLA----------------VLQACTHTGFLEKGWAISIIQYDDKGI 478 (641)
Q Consensus 416 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~----------------ll~~~~~~g~~~~a~~~~~~~~~~~~~ 478 (641)
.....+...|++++|+..|++..+. .|+.. .+.. +..++...|++++|...|+...+..+
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p- 85 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAP- 85 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-
Confidence 3445566778888888888888775 45543 4555 77789999999999999999996433
Q ss_pred CCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCC-ChhHHHHHHHHHHHcC--CHHHHHHHHHHhHccCCCCCccHH
Q 048321 479 SYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHL--NIEIGEYVAYCLFKLEPHSAAPYV 554 (641)
Q Consensus 479 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~ 554 (641)
.+...+..+..+|...|++++|+..|++.. ..| +..+|..+...+...| +.+.+...++++....|. ...+.
T Consensus 86 ---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~ 161 (208)
T 3urz_A 86 ---NNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYARY 161 (208)
T ss_dssp ---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHHH
T ss_pred ---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHHH
Confidence 457889999999999999999999999976 444 6778888888876655 345566667776654443 23466
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 555 EMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 555 ~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
.++.++...|++++|...+++..+.
T Consensus 162 ~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 162 RDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHh
Confidence 7788999999999999999988764
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.86 E-value=2.6e-07 Score=87.90 Aligned_cols=192 Identities=15% Similarity=0.123 Sum_probs=113.4
Q ss_pred hHHHHHHHHHHhcC--CHHHHHHHHhhCCC---CChhHHHHHHHHH----HHc---CChHHHHHHHHHHHHcCCCC-Chh
Q 048321 381 MVCNALIDMYSKCG--SIGDARELFYALPE---KIVVSWTTMIAGC----ALN---GEFVEALDLFHQLMELDLRP-NRV 447 (641)
Q Consensus 381 ~~~~~li~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~----~~~---g~~~~A~~~~~~m~~~g~~p-~~~ 447 (641)
.+|+.--..+...| +++++++.++.+.. ++..+|+.--..+ ... +++++++.+++++.+. .| |..
T Consensus 68 taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~--~pkny~ 145 (306)
T 3dra_A 68 TIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSS--DPKNHH 145 (306)
T ss_dssp HHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHH--CTTCHH
T ss_pred HHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHh--CCCCHH
Confidence 33444444444444 55555555554433 2334444433333 333 5667777777777765 33 334
Q ss_pred hHHHHHHHHhccCChH--HHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCC------hHHHHHHHHhCC--CCCChh
Q 048321 448 TFLAVLQACTHTGFLE--KGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGK------LKEALDFVQSMP--IKSDAG 517 (641)
Q Consensus 448 t~~~ll~~~~~~g~~~--~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~------~~~A~~~~~~~~--~~p~~~ 517 (641)
++..-...+.+.|.++ ++++.++.+.+... -+...|+.-..++.+.|+ ++++++.++++. .+-|..
T Consensus 146 aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~----~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~S 221 (306)
T 3dra_A 146 VWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL----KNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPS 221 (306)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHH
T ss_pred HHHHHHHHHHHhcccChHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCcc
Confidence 5555555555566665 77777777765433 445556555555555555 677777776655 334666
Q ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHhHccC---CCCCccHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048321 518 IWGTLLCACKIHLN-IEIGEYVAYCLFKLE---PHSAAPYVEMANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 518 ~~~~ll~~~~~~g~-~~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
.|+.+...+.+.|+ .+......+++++++ |.++.++..++++|.+.|+.++|.++++.+.+
T Consensus 222 aW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 222 TWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 77777777766665 333555666666665 66667777777777777788888887777764
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.84 E-value=9e-08 Score=87.90 Aligned_cols=186 Identities=12% Similarity=-0.086 Sum_probs=126.0
Q ss_pred HHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCC--CchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-h---hHHHH
Q 048321 345 LVTVLSMISGCGQSGALELGKWFDNYACSGGLK--DNVMVCNALIDMYSKCGSIGDARELFYALPE--KI-V---VSWTT 416 (641)
Q Consensus 345 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~---~~~~~ 416 (641)
...+..+...+...|++++|...++.+++.... .....+..+..+|.+.|++++|...|+++.+ |+ . .++..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 344555667788899999999999999985422 1245778889999999999999999998764 32 2 24555
Q ss_pred HHHHHHH------------------cCChHHHHHHHHHHHHcCCCCChhh-HHHHHHHHhccCChHHHHHHHHHHHhhhC
Q 048321 417 MIAGCAL------------------NGEFVEALDLFHQLMELDLRPNRVT-FLAVLQACTHTGFLEKGWAISIIQYDDKG 477 (641)
Q Consensus 417 li~~~~~------------------~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 477 (641)
+..++.. .|++++|+..|+++.+. .|+... ...... . ..+....
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----l------~~~~~~~----- 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----L------VFLKDRL----- 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----H------HHHHHHH-----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----H------HHHHHHH-----
Confidence 5555554 34556666666665553 344331 111100 0 0000000
Q ss_pred CCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCCCh----hHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCcc
Q 048321 478 ISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKSDA----GIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAP 552 (641)
Q Consensus 478 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 552 (641)
......++..|.+.|++++|+..|+++. ..|+. ..+..+..++...|+.++|+..++++....|++.++
T Consensus 147 ------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 147 ------AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp ------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred ------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence 0112346678899999999999999876 33432 468888899999999999999999999999987665
Q ss_pred H
Q 048321 553 Y 553 (641)
Q Consensus 553 ~ 553 (641)
.
T Consensus 221 ~ 221 (225)
T 2yhc_A 221 H 221 (225)
T ss_dssp T
T ss_pred c
Confidence 3
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.6e-08 Score=97.87 Aligned_cols=199 Identities=7% Similarity=-0.116 Sum_probs=150.2
Q ss_pred CcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 048321 357 QSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKIVVSWTTMIAGCALNGEFVEALDLFHQ 436 (641)
Q Consensus 357 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 436 (641)
..|++++|..++++..+..- .. .+...++++.|...|.. ....|...|++++|+..|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~-~~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLK-TS---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHC-CC---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcc-cc---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHH
Confidence 35788889998888776321 11 11115788888887665 45678889999999999998
Q ss_pred HHHcCC---CC-C-hhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCC--hhHHHHHHHHhhccCChHHHHHHHHh
Q 048321 437 LMELDL---RP-N-RVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPE--LDHYSCMADLLGRKGKLKEALDFVQS 509 (641)
Q Consensus 437 m~~~g~---~p-~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~ 509 (641)
..+... .+ . ..+|..+...|...|++++|...|++..+.....-.|. ..++..+..+|.+ |++++|+..+++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 876311 11 1 23778888899999999999999998875432001122 4578888999988 999999999988
Q ss_pred CC-CCC---C----hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCc------cHHHHHHHHHhcCCchHHHHHHHH
Q 048321 510 MP-IKS---D----AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAA------PYVEMANKYALGGRWDGVANIRTM 575 (641)
Q Consensus 510 ~~-~~p---~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~eA~~~~~~ 575 (641)
.. ..| + ..++..+...+...|++++|+..+++++++.|++.. .+..++.++...|++++|.+.+++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 65 111 1 357888889999999999999999999998776542 667788899999999999999998
Q ss_pred HH
Q 048321 576 MK 577 (641)
Q Consensus 576 m~ 577 (641)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 77
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.78 E-value=1e-07 Score=86.58 Aligned_cols=128 Identities=10% Similarity=-0.060 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHH
Q 048321 413 SWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMAD 492 (641)
Q Consensus 413 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~ 492 (641)
.+..+...+...|++++|+..|++. +.|+...+..+...+...|++++|...|+...+..+ .+...+..++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~----~~~~~~~~lg~ 79 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK----HLAVAYFQRGM 79 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc----cchHHHHHHHH
Confidence 4445556666677777777776654 456666666666677777777777777777664322 34556666666
Q ss_pred HhhccCChHHHHHHHHhCC-CCC-Ch----------------hHHHHHHHHHHHcCCHHHHHHHHHHhHccCCC
Q 048321 493 LLGRKGKLKEALDFVQSMP-IKS-DA----------------GIWGTLLCACKIHLNIEIGEYVAYCLFKLEPH 548 (641)
Q Consensus 493 ~~~~~g~~~~A~~~~~~~~-~~p-~~----------------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 548 (641)
+|.+.|++++|++.|++.. ..| +. ..|..+...+...|++++|...+++++++.|+
T Consensus 80 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 80 LYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 6666666666666666643 112 22 45556666666666666666666666666664
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.78 E-value=4.7e-08 Score=82.32 Aligned_cols=96 Identities=14% Similarity=-0.070 Sum_probs=84.1
Q ss_pred hhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHH
Q 048321 484 LDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYA 561 (641)
Q Consensus 484 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 561 (641)
...+..+...+.+.|++++|+..|++.. .+.+...|..+..++...|++++|+..++++++++|+++..+..++.+|.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 4556677788889999999999998876 34467788999999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHhC
Q 048321 562 LGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 562 ~~g~~~eA~~~~~~m~~~ 579 (641)
..|++++|.+.+++..+.
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999887754
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.78 E-value=6.9e-08 Score=84.77 Aligned_cols=156 Identities=8% Similarity=-0.049 Sum_probs=115.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHH-H-H
Q 048321 382 VCNALIDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQ-A-C 456 (641)
Q Consensus 382 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~-~-~ 456 (641)
....+...+...|++++|...|++..+ .+...|..+...+...|++++|+..|++.... .|+.. +..+.. . +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~-~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNS-YKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChH-HHHHHHHHHH
Confidence 345566778888999999999998876 46678888888999999999999999988765 44333 222222 1 1
Q ss_pred hccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCCC---hhHHHHHHHHHHHcCCH
Q 048321 457 THTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKSD---AGIWGTLLCACKIHLNI 532 (641)
Q Consensus 457 ~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~---~~~~~~ll~~~~~~g~~ 532 (641)
...+...+|...++...+..+ .+...+..+..++.+.|++++|...|+++. ..|+ ...+..+...+...|+.
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P----~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 160 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANP----DNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQG 160 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHST----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSS
T ss_pred HhhcccchHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCC
Confidence 222233346788888875332 347888889999999999999999998865 4554 45788888899999999
Q ss_pred HHHHHHHHHhHc
Q 048321 533 EIGEYVAYCLFK 544 (641)
Q Consensus 533 ~~a~~~~~~~~~ 544 (641)
++|...+++++.
T Consensus 161 ~~A~~~y~~al~ 172 (176)
T 2r5s_A 161 NAIASKYRRQLY 172 (176)
T ss_dssp CHHHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 999999887764
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.78 E-value=3.3e-08 Score=81.26 Aligned_cols=119 Identities=8% Similarity=-0.027 Sum_probs=95.8
Q ss_pred hhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHH
Q 048321 484 LDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYA 561 (641)
Q Consensus 484 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 561 (641)
...+..++..+.+.|++++|+..|++.. .+.+...|..+..++...|++++|+..++++++++|+++..|..++.+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 4556777788889999999999998865 44467789999999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHhCCCccCCceeEEEECCEEEEEeeCCCCCCChhcHHHHHHHHHHH
Q 048321 562 LGGRWDGVANIRTMMKRNQVKKFPGQSLFHINGKTCTFTAEDRYHAESELTYPVLDCLALH 622 (641)
Q Consensus 562 ~~g~~~eA~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 622 (641)
..|++++|.+.+++..+.... ....|....+...+..+...
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~--------------------~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAE--------------------VNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHH--------------------HHTTTTHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcc--------------------cCCchhHHHHHHHHHHHHHh
Confidence 999999999999888764210 01236677777766665544
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.77 E-value=5.3e-07 Score=86.49 Aligned_cols=161 Identities=9% Similarity=-0.032 Sum_probs=120.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCC-CCChh----hHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCC----hhH
Q 048321 416 TMIAGCALNGEFVEALDLFHQLMELDL-RPNRV----TFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPE----LDH 486 (641)
Q Consensus 416 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~----t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~----~~~ 486 (641)
..+..+...|++++|..++++...... .|+.. .+..+...+...|++++|...|+.+.+... -.++ ...
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~--~~~~~~~~~~~ 157 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQL--TGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCC--CCSCTTHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhc--ccccHHHHHHH
Confidence 346677888999999999999887421 12211 223455567777899999999999885322 1233 336
Q ss_pred HHHHHHHhhccCChHHHHHHHHhCC-----C---CCC-hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCC------Cc
Q 048321 487 YSCMADLLGRKGKLKEALDFVQSMP-----I---KSD-AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHS------AA 551 (641)
Q Consensus 487 ~~~l~~~~~~~g~~~~A~~~~~~~~-----~---~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~ 551 (641)
++.++..|...|++++|+..++++. . .+. ..++..+...|...|++++|+..+++++++.+.. +.
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~ 237 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 8889999999999999999888865 1 111 2377888899999999999999999998876433 45
Q ss_pred cHHHHHHHHHhcCC-chHHHHHHHHHHh
Q 048321 552 PYVEMANKYALGGR-WDGVANIRTMMKR 578 (641)
Q Consensus 552 ~~~~l~~~~~~~g~-~~eA~~~~~~m~~ 578 (641)
.|..+|.+|.+.|+ +++|.+.+++...
T Consensus 238 ~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 78899999999995 6999998887653
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.76 E-value=2.2e-07 Score=89.28 Aligned_cols=165 Identities=8% Similarity=-0.037 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh-----hhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCC--hh
Q 048321 413 SWTTMIAGCALNGEFVEALDLFHQLMELDLRPNR-----VTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPE--LD 485 (641)
Q Consensus 413 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~--~~ 485 (641)
.+...+..+...|++++|++.+++..+.....+. ..+..+...+...|++++|...++...+.......+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 4455667778888999998888888775321111 1233344566778899999999888874322111122 44
Q ss_pred HHHHHHHHhhccCChHHHHHHHHhCC----CCCC-----hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCC------CC
Q 048321 486 HYSCMADLLGRKGKLKEALDFVQSMP----IKSD-----AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPH------SA 550 (641)
Q Consensus 486 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~ 550 (641)
.|+.++..|...|++++|+..++++. ..|+ ..++..+...|...|++++|+..+++++++.++ -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 78888899999999999999988754 1222 257888889999999999999999999876532 14
Q ss_pred ccHHHHHHHHHhcCCchHH-HHHHHHHH
Q 048321 551 APYVEMANKYALGGRWDGV-ANIRTMMK 577 (641)
Q Consensus 551 ~~~~~l~~~~~~~g~~~eA-~~~~~~m~ 577 (641)
..|..++.+|...|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 5688999999999999999 77677654
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.75 E-value=9.1e-08 Score=82.85 Aligned_cols=127 Identities=9% Similarity=-0.096 Sum_probs=92.9
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHH
Q 048321 448 TFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCA 525 (641)
Q Consensus 448 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~ 525 (641)
.+..+...+...|++++|...|+...+..+ .+...+..++.++...|++++|+..+++.. .+.+...|..+...
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~----~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNP----SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCC----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 344455556666777777777776664322 346666677777777777777777777654 33456678888888
Q ss_pred HHHcCCHHHHHHHHHHhHccCCCCCccHHHHH--HHHHhcCCchHHHHHHHHHHh
Q 048321 526 CKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMA--NKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 526 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~--~~~~~~g~~~eA~~~~~~m~~ 578 (641)
+...|++++|...+++++++.|+++..+..++ ..+...|++++|.+.++....
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999999999999998887775444 448888999999998877643
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.74 E-value=2.5e-07 Score=84.00 Aligned_cols=132 Identities=12% Similarity=-0.020 Sum_probs=98.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCC
Q 048321 382 VCNALIDMYSKCGSIGDARELFYALPEKIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGF 461 (641)
Q Consensus 382 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 461 (641)
.+..+...+...|++++|...|++...++...|..+...|...|++++|+..|++..+.. +.+...+..+..++...|+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 345567777888888888888888877778888888888888888888888888888753 2234577777778888888
Q ss_pred hHHHHHHHHHHHhhhCCCCCC--------------ChhHHHHHHHHhhccCChHHHHHHHHhCC-CCCCh
Q 048321 462 LEKGWAISIIQYDDKGISYNP--------------ELDHYSCMADLLGRKGKLKEALDFVQSMP-IKSDA 516 (641)
Q Consensus 462 ~~~a~~~~~~~~~~~~~~~~p--------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~ 516 (641)
+++|...|+.+.+..+ -.+ ....+..++.+|.+.|++++|.+.|++.. ..|+.
T Consensus 87 ~~~A~~~~~~al~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLR--GNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHHHHHHHHHHHTTT--TCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHHHhCC--CccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 8888888888875433 111 12667778888888888888888888765 45543
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.73 E-value=2.7e-08 Score=87.46 Aligned_cols=118 Identities=5% Similarity=-0.008 Sum_probs=72.6
Q ss_pred ccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHH-HHHcCCH--
Q 048321 458 HTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCA-CKIHLNI-- 532 (641)
Q Consensus 458 ~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~-~~~~g~~-- 532 (641)
..|++++|...++...+..+ .+...|..++..|...|++++|+..|++.. .+.+...|..+... +...|++
T Consensus 22 ~~~~~~~A~~~~~~al~~~p----~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANP----QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp -----CCCCHHHHHHHHHCC----SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hccCHHHHHHHHHHHHHhCC----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence 44556666666666554322 345556666666666666666666666654 22345556666666 5566776
Q ss_pred HHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 533 EIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 533 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
++|+..++++++.+|+++..+..++.+|...|++++|.+.++++.+.
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 77777777777777777777777777777777777777777766654
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=3.8e-07 Score=87.11 Aligned_cols=159 Identities=8% Similarity=-0.043 Sum_probs=100.5
Q ss_pred HHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhHHH-HHHHHHH
Q 048321 346 VTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE--KIVVSWT-TMIAGCA 422 (641)
Q Consensus 346 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~-~li~~~~ 422 (641)
..+..+...+...|++++|...++.+.+.. +.+...+..+...|.+.|++++|...|+++.. |+..... .....+.
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~ 196 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELL 196 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHH
Confidence 344455555666677777777777776654 44566777777777778888888888877765 3332222 2222355
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChH
Q 048321 423 LNGEFVEALDLFHQLMELDLRPNR-VTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLK 501 (641)
Q Consensus 423 ~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 501 (641)
..++.++|+..|++.... .|+. ..+..+...+...|++++|...|..+.+..+ -..+...+..++.+|...|+.+
T Consensus 197 ~~~~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p--~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 197 XQAADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDL--TAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHTSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TGGGGHHHHHHHHHHHHHCTTC
T ss_pred hhcccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccc--ccccchHHHHHHHHHHHcCCCC
Confidence 566677777777777765 4443 4666666677777777777777777775332 1122456666677777777776
Q ss_pred HHHHHHHh
Q 048321 502 EALDFVQS 509 (641)
Q Consensus 502 ~A~~~~~~ 509 (641)
+|...+++
T Consensus 273 ~a~~~~r~ 280 (287)
T 3qou_A 273 ALASXYRR 280 (287)
T ss_dssp HHHHHHHH
T ss_pred cHHHHHHH
Confidence 66666654
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.73 E-value=1.2e-07 Score=77.27 Aligned_cols=114 Identities=13% Similarity=0.126 Sum_probs=82.4
Q ss_pred hhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHH
Q 048321 447 VTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLC 524 (641)
Q Consensus 447 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~ 524 (641)
..+..+...+...|++++|...|+.+.+..+ .+...+..++..+.+.|++++|..+++++. .+.+..+|..+..
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 85 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDP----NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc----CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHH
Confidence 3555555666667777777777776664322 345566667777777777777777777654 3345667788888
Q ss_pred HHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcC
Q 048321 525 ACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGG 564 (641)
Q Consensus 525 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 564 (641)
.+...|++++|...++++++..|+++..+..++.++...|
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 8888899999999999999999988888888888877654
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.72 E-value=9.8e-08 Score=79.03 Aligned_cols=114 Identities=9% Similarity=-0.086 Sum_probs=82.5
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHH
Q 048321 448 TFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCA 525 (641)
Q Consensus 448 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~ 525 (641)
.+..+...+...|++++|...|+...+..+ .+...+..++.+|...|++++|+..+++.. .+.+...|..+...
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~----~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKRNP----KDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTTCT----TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC----CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 555555566666666677666666664222 345566666677777777777777776654 33356678888888
Q ss_pred HHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCC
Q 048321 526 CKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGR 565 (641)
Q Consensus 526 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 565 (641)
+...|++++|+..++++++++|++...+..++.++...|+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 8888999999999999999999888888888888887764
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.72 E-value=1e-07 Score=78.58 Aligned_cols=116 Identities=7% Similarity=-0.119 Sum_probs=87.2
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHH
Q 048321 448 TFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCA 525 (641)
Q Consensus 448 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~ 525 (641)
.+..+...+...|++++|...|+.+....+ .+...+..++..+...|++++|++.+++.. .+.+...|..+...
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELNP----ANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCC----CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 455555566667777777777777664322 345666677777777777777777777654 33356678888888
Q ss_pred HHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCch
Q 048321 526 CKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWD 567 (641)
Q Consensus 526 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 567 (641)
+...|++++|...+++++++.|+++..+..++.++...|+++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 899999999999999999999998889999999999888763
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.72 E-value=3.3e-06 Score=80.37 Aligned_cols=228 Identities=8% Similarity=-0.069 Sum_probs=164.9
Q ss_pred CCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHhcCcC--chHHHHHHHHHHHHcCCCCchhHHHHHHHHH----Hhc--
Q 048321 323 KGDLDEALRLFFAMEAAGELPDLV-TVLSMISGCGQSG--ALELGKWFDNYACSGGLKDNVMVCNALIDMY----SKC-- 393 (641)
Q Consensus 323 ~g~~~~A~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~-- 393 (641)
....++|+.++..++.. .|+.. .++.--..+...+ +++++..+++.++..+ +-+..+|+---..+ .+.
T Consensus 46 ~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 46 EEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNN 122 (306)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccc
Confidence 33445778887777764 34443 3444444455555 7888888888877765 44455555544444 444
Q ss_pred -CCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChH--HHHHHHHHHHHcCCCCChhhHHHHHHHHhccCC------
Q 048321 394 -GSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFV--EALDLFHQLMELDLRPNRVTFLAVLQACTHTGF------ 461 (641)
Q Consensus 394 -g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~------ 461 (641)
+++++++++++.+.+ +|..+|+.-.-.+.+.|.++ ++++.++++.+.. .-|...|+.-...+.+.+.
T Consensus 123 ~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhh
Confidence 788899998888765 56778888777788888888 9999999999874 2344566665556666665
Q ss_pred hHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHH-HHHHHHhCC-C----CCChhHHHHHHHHHHHcCCHHHH
Q 048321 462 LEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKE-ALDFVQSMP-I----KSDAGIWGTLLCACKIHLNIEIG 535 (641)
Q Consensus 462 ~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~-~----~p~~~~~~~ll~~~~~~g~~~~a 535 (641)
++++++.++.++...+ -|...|+.+..++.+.|+..+ +.++..+.. . ..++..+..++..+.+.|+.++|
T Consensus 202 ~~eEl~~~~~aI~~~p----~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A 277 (306)
T 3dra_A 202 IDEELNYVKDKIVKCP----QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNES 277 (306)
T ss_dssp HHHHHHHHHHHHHHCS----SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhCC----CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence 8999999999986543 567888888889989888555 555776654 2 34677888999999999999999
Q ss_pred HHHHHHhHc-cCCCCCccHHHHHH
Q 048321 536 EYVAYCLFK-LEPHSAAPYVEMAN 558 (641)
Q Consensus 536 ~~~~~~~~~-~~p~~~~~~~~l~~ 558 (641)
.++++.+.+ .+|-+...|...+.
T Consensus 278 ~~~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 278 RTVYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHHHHhccChHHHHHHHHHHh
Confidence 999999996 89987777766554
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.69 E-value=9.4e-06 Score=83.55 Aligned_cols=355 Identities=10% Similarity=0.006 Sum_probs=163.1
Q ss_pred chHHhHHHHHHhhccCcCCCChhHHHHHhhccC--CCCcccHHHHHHHHHhcCC-hhHHHHHHHHHHHc-CCCC-ChhhH
Q 048321 70 LIYSQMIHGHIVKSPFVKCDRLDCAYKIFDEMA--VRDVASWNAMLVGFAQMGF-LENVLRLFYNMRLV-GIQA-DFVTV 144 (641)
Q Consensus 70 ~~~~~~i~~~~~~~~~~~~~~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~-~~~a~~l~~~m~~~-g~~p-~~~t~ 144 (641)
+..++.+++..+..-+ .+.++.+..+|++.. .|++..|...+.-..+.+. .+....+|+..... |..| +...|
T Consensus 11 i~~aR~vyer~l~~~P--~~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW 88 (493)
T 2uy1_A 11 LSSPSAIMEHARRLYM--SKDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLY 88 (493)
T ss_dssp -CCHHHHHHHHHHHHH--TTCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHH
T ss_pred hHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHH
Confidence 3444444444433221 156777777777654 4688888888887776663 35566777776653 4333 44556
Q ss_pred HHHHHHHh----ccCChhHHHHHHHHHHHHcCCCChhHHHHHHHHhHc-------------CCChhHHHHHHhcccCC--
Q 048321 145 MGLTQAAI----HAKHLSLLKSVHSFGIHIGVDADVSVCNTWISSYAK-------------CDDLKMAELVFCGIEER-- 205 (641)
Q Consensus 145 ~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------------~g~~~~A~~~~~~~~~~-- 205 (641)
...++-+. ..++.+.+..+++.++......-..+|......-.. .+.+..|..+++.+...
T Consensus 89 ~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~ 168 (493)
T 2uy1_A 89 KEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIR 168 (493)
T ss_dssp HHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 66666544 235677888888888873211111222222111000 01122233333322221
Q ss_pred CCCchhHHHHHHHHhcCCC-------chHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCc
Q 048321 206 LRTVVSWNSMVAGCTYGDK-------FDDSLNFYRHMMYNGFRLDVTTVVSLLSSFVCPEALVQGRLVHSHGIHYGFDLD 278 (641)
Q Consensus 206 ~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 278 (641)
..+...|...+.--...+. .+.+..+|+++.... +.+...|...+.-+.+.|+++.|..+++..+.. +.+
T Consensus 169 ~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~ 245 (493)
T 2uy1_A 169 GWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDG 245 (493)
T ss_dssp TCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCS
T ss_pred hccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCc
Confidence 0123345444433222110 123455666665532 233444555555555666777777777777666 333
Q ss_pred hhHHHHHHHHHHhcCCHHHH-HHHHhcCC--C----------CCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH
Q 048321 279 VSVINTLISMYSKCGDIDSA-RVLFDGIC--D----------RTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDL 345 (641)
Q Consensus 279 ~~~~~~li~~~~~~g~~~~A-~~~~~~~~--~----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 345 (641)
...+.. |....+.++. .++.+... . .....|...+....+.++.+.|..+|.+. .. ...+.
T Consensus 246 ~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~ 319 (493)
T 2uy1_A 246 MFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGP 319 (493)
T ss_dssp SHHHHH----HHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCH
T ss_pred HHHHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCCh
Confidence 333222 2211111111 11111100 0 01123444444444455566666666655 21 11122
Q ss_pred HHHHH--HHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHH
Q 048321 346 VTVLS--MISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKIVVSWTTMIAGCAL 423 (641)
Q Consensus 346 ~t~~~--ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 423 (641)
..|.. .+... ..++.+.|..+++...+.. +.++..+...++...+.|+.+.|..+|+.+. .....|...+..-..
T Consensus 320 ~v~i~~A~lE~~-~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-k~~~lw~~~~~fE~~ 396 (493)
T 2uy1_A 320 HVFIYCAFIEYY-ATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-KTSRMWDSMIEYEFM 396 (493)
T ss_dssp HHHHHHHHHHHH-HHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-CBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 22221 11111 1124566666666555532 2223344445555555666666666666653 234455555554455
Q ss_pred cCChHHHHHHHHHHH
Q 048321 424 NGEFVEALDLFHQLM 438 (641)
Q Consensus 424 ~g~~~~A~~~~~~m~ 438 (641)
.|+.+.+..+++++.
T Consensus 397 ~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 397 VGSMELFRELVDQKM 411 (493)
T ss_dssp HSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 555555555555554
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.69 E-value=3.6e-08 Score=93.95 Aligned_cols=192 Identities=10% Similarity=-0.069 Sum_probs=123.4
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHH
Q 048321 379 NVMVCNALIDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNR-VTFLAVLQ 454 (641)
Q Consensus 379 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~ 454 (641)
+...+..+...+.+.|++++|...|+.... .+...|..+...|...|++++|+..+++..+. .|+. ..+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 344556666777777777777777776543 35667777778888888888888888887764 4544 46667777
Q ss_pred HHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHH
Q 048321 455 ACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHLNIEI 534 (641)
Q Consensus 455 ~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~ 534 (641)
++...|++++|...|+.+.+..+ -.+. .+...+....+..+... .........+++......+ ..+ ..|+.++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p--~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~l-~~l-~~~~~~~ 153 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAK--EQRL--NFGDDIPSALRIAKKKR-WNSIEERRIHQESELHSYL-TRL-IAAERER 153 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHH--HTTC--CCCSHHHHHHHHHHHHH-HHHHHHTCCCCCCHHHHHH-HHH-HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCc--cchh--hHHHHHHHHHHHHHHHH-HHHHHHHHHhhhHHHHHHH-HHH-HHHHHHH
Confidence 88888888888888887775322 1110 11111111111111111 1112222334444444433 223 3689999
Q ss_pred HHHHHHHhHccCCCCCccHHHHHHHHHhc-CCchHHHHHHHHHHhC
Q 048321 535 GEYVAYCLFKLEPHSAAPYVEMANKYALG-GRWDGVANIRTMMKRN 579 (641)
Q Consensus 535 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~eA~~~~~~m~~~ 579 (641)
|.+.++++++++|++......+..++.+. +++++|.++++++.+.
T Consensus 154 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 154 ELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 99999999999998877777788888877 7799999999887653
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.67 E-value=9e-08 Score=93.77 Aligned_cols=142 Identities=11% Similarity=-0.037 Sum_probs=104.5
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHH
Q 048321 411 VVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCM 490 (641)
Q Consensus 411 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l 490 (641)
...|..+...|.+.|++++|+..|++..+. .|+...+ ..+.+.++ . .-....|..+
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~-----------~~~~~~~~----~-------~~~~~~~~nl 202 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSF-----------SNEEAQKA----Q-------ALRLASHLNL 202 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCC-----------CSHHHHHH----H-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccC-----------ChHHHHHH----H-------HHHHHHHHHH
Confidence 446666666677777777777777777665 3433210 00111110 0 0114677888
Q ss_pred HHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchH
Q 048321 491 ADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDG 568 (641)
Q Consensus 491 ~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~e 568 (641)
..+|.+.|++++|+..+++.. .+.+...|..+..++...|++++|+..++++++++|+++..+..++.++...|++++
T Consensus 203 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~ 282 (336)
T 1p5q_A 203 AMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLA 282 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Confidence 888889999999999888876 344677899999999999999999999999999999999999999999999999999
Q ss_pred H-HHHHHHH
Q 048321 569 V-ANIRTMM 576 (641)
Q Consensus 569 A-~~~~~~m 576 (641)
| .++++.|
T Consensus 283 a~~~~~~~~ 291 (336)
T 1p5q_A 283 REKKLYANM 291 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 9 4455555
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.66 E-value=1.5e-07 Score=81.48 Aligned_cols=95 Identities=8% Similarity=-0.015 Sum_probs=55.7
Q ss_pred hhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHH
Q 048321 484 LDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYA 561 (641)
Q Consensus 484 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 561 (641)
...+..+...+.+.|++++|++.|++.. .+.+...|..+...+...|++++|+..++++++++|+++..|..++.+|.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3445555555555666666666555544 22244555556666666666666666666666666666666666666666
Q ss_pred hcCCchHHHHHHHHHHh
Q 048321 562 LGGRWDGVANIRTMMKR 578 (641)
Q Consensus 562 ~~g~~~eA~~~~~~m~~ 578 (641)
..|++++|.+.+++..+
T Consensus 91 ~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 66666666666655544
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=6e-08 Score=82.23 Aligned_cols=108 Identities=6% Similarity=-0.098 Sum_probs=84.4
Q ss_pred CCChh-hHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHH
Q 048321 443 RPNRV-TFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIW 519 (641)
Q Consensus 443 ~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~ 519 (641)
.|+.. .+..+...+...|++++|...|+.+....+ .+...|..+..+|.+.|++++|+..|++.. .+.++..|
T Consensus 17 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 92 (148)
T 2vgx_A 17 SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH----YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFP 92 (148)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHH
T ss_pred CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCc----ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHH
Confidence 45433 556666677888888888888888875433 457777888888888888888888888865 33466788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHH
Q 048321 520 GTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYV 554 (641)
Q Consensus 520 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 554 (641)
..+..++...|++++|+..+++++++.|+++....
T Consensus 93 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 127 (148)
T 2vgx_A 93 FHAAECLLQXGELAEAESGLFLAQELIANXPEFXE 127 (148)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence 88889999999999999999999999998776543
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.62 E-value=8.3e-08 Score=78.13 Aligned_cols=95 Identities=11% Similarity=-0.073 Sum_probs=81.8
Q ss_pred HHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhc
Q 048321 486 HYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALG 563 (641)
Q Consensus 486 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 563 (641)
.+..++..+.+.|++++|+..|++.. .+.+...|..+..++...|++++|+..++++++++|+++..+..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 45567778888999999999998876 3446778888999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHhCC
Q 048321 564 GRWDGVANIRTMMKRNQ 580 (641)
Q Consensus 564 g~~~eA~~~~~~m~~~~ 580 (641)
|++++|.+.+++..+..
T Consensus 99 g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999998887643
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.60 E-value=4.2e-07 Score=73.16 Aligned_cols=95 Identities=9% Similarity=0.033 Sum_probs=63.4
Q ss_pred hhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHH
Q 048321 484 LDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYA 561 (641)
Q Consensus 484 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 561 (641)
...+..++..+...|++++|...+++.. .+.+...|..+...+...|++++|...++++++..|+++..+..++.+|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3445556666666666666666666654 23355566666666677777777777777777777776677777777777
Q ss_pred hcCCchHHHHHHHHHHh
Q 048321 562 LGGRWDGVANIRTMMKR 578 (641)
Q Consensus 562 ~~g~~~eA~~~~~~m~~ 578 (641)
..|++++|.+.+++..+
T Consensus 84 ~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HTTCHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 77777777777766654
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.60 E-value=4.2e-07 Score=79.70 Aligned_cols=126 Identities=9% Similarity=0.039 Sum_probs=101.1
Q ss_pred HHcCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHH-hhccCC
Q 048321 422 ALNGEFVEALDLFHQLMELDLRP-NRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADL-LGRKGK 499 (641)
Q Consensus 422 ~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~ 499 (641)
...|++++|+..+++..+. .| +...+..+...|...|++++|...|+.+.+..+ .+...+..++.+ +...|+
T Consensus 21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p----~~~~~~~~la~~l~~~~~~ 94 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG----ENAELYAALATVLYYQASQ 94 (177)
T ss_dssp C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC----SCHHHHHHHHHHHHHHTTT
T ss_pred hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC----CCHHHHHHHHHHHHHhcCC
Confidence 4568889999999998876 45 445788888899999999999999999986544 457778888888 778999
Q ss_pred h--HHHHHHHHhCC-CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccH
Q 048321 500 L--KEALDFVQSMP-IKS-DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPY 553 (641)
Q Consensus 500 ~--~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 553 (641)
+ ++|+..++++. ..| +...|..+...+...|++++|...+++++++.|+++...
T Consensus 95 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 95 HMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp CCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred cchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 8 99999999876 334 567888899999999999999999999999999875543
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.59 E-value=1.4e-06 Score=78.88 Aligned_cols=172 Identities=6% Similarity=-0.099 Sum_probs=127.8
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC-CChhHHHHHHHHHHHcC----ChHHHHHHHHHHH
Q 048321 364 GKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE-KIVVSWTTMIAGCALNG----EFVEALDLFHQLM 438 (641)
Q Consensus 364 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~ 438 (641)
|...+....+.| ++..+..|..+|...+++++|.+.|++..+ .+..++..|...|.. + ++++|++.|++..
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 445566666543 556667777777778888888888877655 356677777777766 6 8899999999987
Q ss_pred HcCCCCChhhHHHHHHHHhc----cCChHHHHHHHHHHHhhhCCCCCCC---hhHHHHHHHHhhc----cCChHHHHHHH
Q 048321 439 ELDLRPNRVTFLAVLQACTH----TGFLEKGWAISIIQYDDKGISYNPE---LDHYSCMADLLGR----KGKLKEALDFV 507 (641)
Q Consensus 439 ~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~----~g~~~~A~~~~ 507 (641)
+.| +...+..+...|.. .+++++|...|+...+ .+ |. ...+..|..+|.. .+++++|+..|
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~-~~----~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR-DS----ESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS-ST----TSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH-cC----CCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 754 45566677777766 7889999999998873 33 53 7788888888887 78899999999
Q ss_pred HhCC-CCCChhHHHHHHHHHHHc-C-----CHHHHHHHHHHhHccCC
Q 048321 508 QSMP-IKSDAGIWGTLLCACKIH-L-----NIEIGEYVAYCLFKLEP 547 (641)
Q Consensus 508 ~~~~-~~p~~~~~~~ll~~~~~~-g-----~~~~a~~~~~~~~~~~p 547 (641)
++.. ..+++..+..|...|... | +.++|...++++.+..+
T Consensus 153 ~~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 153 KGSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 9875 335666777777777643 3 89999999999988754
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.58 E-value=3.1e-07 Score=77.71 Aligned_cols=103 Identities=9% Similarity=-0.106 Sum_probs=72.9
Q ss_pred CCChh-hHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-C-CCChhHH
Q 048321 443 RPNRV-TFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-I-KSDAGIW 519 (641)
Q Consensus 443 ~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~ 519 (641)
.|+.. .+..+...+.+.|++++|...|+.+....+ .+...|..+..+|.+.|++++|+..|++.. . +.++..|
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P----~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~ 107 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF----YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPV 107 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHH
Confidence 44433 555555666777777777777777775322 346667777777777777777777777765 3 3356678
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhHccCCCC
Q 048321 520 GTLLCACKIHLNIEIGEYVAYCLFKLEPHS 549 (641)
Q Consensus 520 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 549 (641)
..+..++...|++++|+..+++++++.|++
T Consensus 108 ~~lg~~~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 108 FHTGQCQLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence 888888888888888888888888888874
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.57 E-value=2.4e-07 Score=73.89 Aligned_cols=98 Identities=11% Similarity=0.014 Sum_probs=81.4
Q ss_pred ChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCC--CCccHHHHHH
Q 048321 483 ELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPH--SAAPYVEMAN 558 (641)
Q Consensus 483 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~ 558 (641)
+...+..++..+.+.|++++|...+++.. .+.+...|..+...+...|++++|+..++++++..|+ ++..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 34556677777888888888888887765 3445677888888889999999999999999999998 8889999999
Q ss_pred HHHhc-CCchHHHHHHHHHHhCC
Q 048321 559 KYALG-GRWDGVANIRTMMKRNQ 580 (641)
Q Consensus 559 ~~~~~-g~~~eA~~~~~~m~~~~ 580 (641)
+|... |++++|.+.++......
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcc
Confidence 99999 99999999998887654
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.57 E-value=1.5e-07 Score=87.36 Aligned_cols=181 Identities=9% Similarity=-0.080 Sum_probs=128.9
Q ss_pred hcCCHHHHHHHHhhCCC--C-ChhHHHHH-------HHHHHHcCChHHHHHHHHHHHHcCCCCChh--------------
Q 048321 392 KCGSIGDARELFYALPE--K-IVVSWTTM-------IAGCALNGEFVEALDLFHQLMELDLRPNRV-------------- 447 (641)
Q Consensus 392 ~~g~~~~A~~~~~~~~~--~-~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------------- 447 (641)
..++.+.|.+.|.+... | ....|..+ ...+...++..+++..+.+-.. +.|+..
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 46777777777777664 2 34567766 4555555566666665555544 333321
Q ss_pred --------hHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCCCCCCh---
Q 048321 448 --------TFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMPIKSDA--- 516 (641)
Q Consensus 448 --------t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~--- 516 (641)
....+...+...|++++|.++|+.+.. ..|+......+...+.+.|++++|+..|+.....|++
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~-----~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~ 170 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV-----AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLA 170 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC-----TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh-----cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccH
Confidence 122345567788999999999988763 2355446666777888999999999999876544433
Q ss_pred -hHHHHHHHHHHHcCCHHHHHHHHHHhHccC--CC-CCccHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 517 -GIWGTLLCACKIHLNIEIGEYVAYCLFKLE--PH-SAAPYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 517 -~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
..+..+..++...|++++|+..++++..-. |. .+.....++.++.+.|+.++|...++++...
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 367778888999999999999999987543 44 4457788999999999999999999988874
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.57 E-value=3.3e-07 Score=76.36 Aligned_cols=98 Identities=10% Similarity=-0.133 Sum_probs=85.0
Q ss_pred CChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHH
Q 048321 482 PELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANK 559 (641)
Q Consensus 482 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 559 (641)
.+...+..++..+...|++++|+..|++.. .+.+...|..+...+...|+++.|+..++++++++|+++..+..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 456778888888888999999998888865 344567888888899999999999999999999999999999999999
Q ss_pred HHhcCCchHHHHHHHHHHhC
Q 048321 560 YALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 560 ~~~~g~~~eA~~~~~~m~~~ 579 (641)
|...|++++|.+.+++..+.
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999887764
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.56 E-value=3.7e-07 Score=75.46 Aligned_cols=99 Identities=11% Similarity=0.027 Sum_probs=88.8
Q ss_pred CCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHH
Q 048321 481 NPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMAN 558 (641)
Q Consensus 481 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 558 (641)
..+...+..++..+.+.|++++|+..+++.. ..| +...|..+...+...|++++|+..+++++++.|+++..+..++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 3456778889999999999999999999965 444 67788999999999999999999999999999999999999999
Q ss_pred HHHhcCCchHHHHHHHHHHhC
Q 048321 559 KYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 559 ~~~~~g~~~eA~~~~~~m~~~ 579 (641)
+|...|++++|.+.+++..+.
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHh
Confidence 999999999999999988763
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.56 E-value=3.8e-08 Score=88.39 Aligned_cols=169 Identities=12% Similarity=-0.032 Sum_probs=103.4
Q ss_pred HHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChH
Q 048321 387 IDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLE 463 (641)
Q Consensus 387 i~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 463 (641)
+......|++++|.+.++.-.. .....|..+...+...|++++|+..|++..+. .|+...+... ..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~--------~~- 79 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ--------IL- 79 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH--------HH-
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh--------hH-
Confidence 3344555666666666654332 13345666677777777777777777777764 2322111000 00
Q ss_pred HHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Q 048321 464 KGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYC 541 (641)
Q Consensus 464 ~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 541 (641)
..-. . ......|..+..+|.+.|++++|+..+++.. .+.+...+..+..++...|++++|+..+++
T Consensus 80 ------~~~~--~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 147 (198)
T 2fbn_A 80 ------LDKK--K----NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYK 147 (198)
T ss_dssp ------HHHH--H----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ------HHHH--H----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 0000 0 0113566777788888888888888888865 344667888899999999999999999999
Q ss_pred hHccCCCCCccHHHHHHHHHhcCCchHHH-HHHHHHHh
Q 048321 542 LFKLEPHSAAPYVEMANKYALGGRWDGVA-NIRTMMKR 578 (641)
Q Consensus 542 ~~~~~p~~~~~~~~l~~~~~~~g~~~eA~-~~~~~m~~ 578 (641)
+++++|+++..+..++.++...|+.+++. ..+..|..
T Consensus 148 al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 148 AASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred HHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999998888777 44554443
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.56 E-value=5.7e-07 Score=73.20 Aligned_cols=96 Identities=16% Similarity=0.207 Sum_probs=87.5
Q ss_pred hhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHH
Q 048321 484 LDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYA 561 (641)
Q Consensus 484 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 561 (641)
...+..++..+.+.|++++|.+.++++. .+.+..+|..+...+...|++++|+..++++++..|+++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 5678889999999999999999999976 44467788999999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHhC
Q 048321 562 LGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 562 ~~g~~~eA~~~~~~m~~~ 579 (641)
..|++++|.+.++++.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 999999999999988764
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.55 E-value=6.7e-06 Score=78.73 Aligned_cols=160 Identities=11% Similarity=-0.067 Sum_probs=119.1
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCC-----C----hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CCh----hhHHH
Q 048321 386 LIDMYSKCGSIGDARELFYALPEK-----I----VVSWTTMIAGCALNGEFVEALDLFHQLMELDLR-PNR----VTFLA 451 (641)
Q Consensus 386 li~~~~~~g~~~~A~~~~~~~~~~-----~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~----~t~~~ 451 (641)
.+..+...|++++|...++...+. + ...+..+...+...|++++|+..|++....... ++. .+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 467788899999999999886541 1 113334666677778999999999999984322 222 26888
Q ss_pred HHHHHhccCChHHHHHHHHHHHhhhCC--CCCCC-hhHHHHHHHHhhccCChHHHHHHHHhCC-------CCCC-hhHHH
Q 048321 452 VLQACTHTGFLEKGWAISIIQYDDKGI--SYNPE-LDHYSCMADLLGRKGKLKEALDFVQSMP-------IKSD-AGIWG 520 (641)
Q Consensus 452 ll~~~~~~g~~~~a~~~~~~~~~~~~~--~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~-~~~~~ 520 (641)
+...|...|++++|...|+.+.+.... ...+. ...+..++..|.+.|++++|+..+++.. ..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 888999999999999999998842210 01122 3467889999999999999999998764 1122 55788
Q ss_pred HHHHHHHHcC-CHHHHHHHHHHhHcc
Q 048321 521 TLLCACKIHL-NIEIGEYVAYCLFKL 545 (641)
Q Consensus 521 ~ll~~~~~~g-~~~~a~~~~~~~~~~ 545 (641)
.+...+...| ++++|...+++++++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 8889999999 579999999988764
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.55 E-value=3.3e-07 Score=77.08 Aligned_cols=107 Identities=10% Similarity=-0.113 Sum_probs=79.2
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHH
Q 048321 448 TFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCA 525 (641)
Q Consensus 448 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~ 525 (641)
.+..+...+...|++++|...|+.+....+ .+...|..+..+|.+.|++++|+..|++.. .+.++..|..+..+
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLDH----YDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhCC----ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 444555567777888888888877775332 356667777788888888888888887765 33456678888888
Q ss_pred HHHcCCHHHHHHHHHHhHccCCCCCccHHHHHH
Q 048321 526 CKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMAN 558 (641)
Q Consensus 526 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 558 (641)
+...|++++|+..+++++++.|+++........
T Consensus 96 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 128 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARALAAAQPAHEALAAR 128 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHH
Confidence 899999999999999999999987766554433
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.54 E-value=5.8e-07 Score=83.46 Aligned_cols=137 Identities=9% Similarity=-0.100 Sum_probs=90.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCC--hhHHHHHHH
Q 048321 415 TTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPE--LDHYSCMAD 492 (641)
Q Consensus 415 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~--~~~~~~l~~ 492 (641)
-.....+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+.... .+ .|. ...+..+..
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~-~~---d~~~~~~a~~~LG~ 179 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGK-WP---DKFLAGAAGVAHGV 179 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG-CS---CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhc-cC---CcccHHHHHHHHHH
Confidence 34555666777777777777777654 35444444444466777788888777764432 10 111 235666777
Q ss_pred HhhccCChHHHHHHHHhCCCC---CC--hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHH
Q 048321 493 LLGRKGKLKEALDFVQSMPIK---SD--AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMAN 558 (641)
Q Consensus 493 ~~~~~g~~~~A~~~~~~~~~~---p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 558 (641)
++.+.|++++|+..|++.... |. ...+..+..++.+.|+.++|...+++++..+|+ +..+..|.+
T Consensus 180 al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 180 AAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD 249 (282)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred HHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence 788888888888888876411 32 336667777888899999999999999998887 555555533
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.54 E-value=8.6e-08 Score=80.22 Aligned_cols=61 Identities=10% Similarity=-0.149 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhHcc-------CCCCCccH----HHHHHHHHhcCCchHHHHHHHHHHh
Q 048321 518 IWGTLLCACKIHLNIEIGEYVAYCLFKL-------EPHSAAPY----VEMANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 518 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
.|..+..++...|++++|+..+++++++ +|+++..| ...+.+|...|+++||.+.+++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 7888888888888888888888888888 99999999 9999999999999999999988765
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.54 E-value=8.3e-07 Score=79.65 Aligned_cols=131 Identities=5% Similarity=-0.127 Sum_probs=67.7
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHhhhCCC-CC-CChhHHHHHHHHhhccCChHHHHHHHHhCC----CCC-C----h
Q 048321 448 TFLAVLQACTHTGFLEKGWAISIIQYDDKGIS-YN-PELDHYSCMADLLGRKGKLKEALDFVQSMP----IKS-D----A 516 (641)
Q Consensus 448 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p-~----~ 516 (641)
++..+...+...|++++|...+++..+..... .. .....+..+...|...|++++|...+++.. ..+ + .
T Consensus 28 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 107 (203)
T 3gw4_A 28 ARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAAS 107 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHH
Confidence 33444444444455555544444444211100 00 112334445555555555555555555432 011 1 2
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHhHccCCC--C----CccHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048321 517 GIWGTLLCACKIHLNIEIGEYVAYCLFKLEPH--S----AAPYVEMANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 517 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~----~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
..+..+...+...|++++|+..+++++++.+. + ...+..++.+|...|++++|.+.+++..+
T Consensus 108 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 108 ANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 24555566666677777777777766654321 1 12346777888888888888877776554
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.53 E-value=3e-07 Score=75.56 Aligned_cols=94 Identities=3% Similarity=-0.094 Sum_probs=80.3
Q ss_pred hHHHHHHHHhhccCChHHHHHHHHhCC-CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCc-------cHHH
Q 048321 485 DHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAA-------PYVE 555 (641)
Q Consensus 485 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~ 555 (641)
..+..++..+.+.|++++|++.|++.. ..| +...|..+..+|...|++++|+..++++++++|++.. .|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 456678888999999999999998876 344 6778999999999999999999999999999987654 5667
Q ss_pred HHHHHHhcCCchHHHHHHHHHHh
Q 048321 556 MANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 556 l~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
+|.+|...|++++|.+.+++...
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 88899999999999999988764
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.52 E-value=1.1e-06 Score=70.68 Aligned_cols=109 Identities=10% Similarity=-0.062 Sum_probs=74.2
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHH
Q 048321 448 TFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCA 525 (641)
Q Consensus 448 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~ 525 (641)
.+..+...+...|++++|...|+......+ .+...+..++.++.+.|++++|...+++.. .+.+...|..+...
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 81 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDP----HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCC----CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 444455555666666666666666664322 345566666666677777777777766654 23356677778888
Q ss_pred HHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHH
Q 048321 526 CKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKY 560 (641)
Q Consensus 526 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 560 (641)
+...|++++|...++++++.+|+++..+..++.+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 88888999999999999998888877777666654
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.52 E-value=6.7e-07 Score=73.46 Aligned_cols=97 Identities=9% Similarity=-0.044 Sum_probs=87.7
Q ss_pred ChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHH
Q 048321 483 ELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKY 560 (641)
Q Consensus 483 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 560 (641)
+...+..++..+...|++++|...+++.. .+.+...|..+...+...|++++|+..++++++..|+++..+..++.+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 45677888899999999999999999876 4446778899999999999999999999999999999999999999999
Q ss_pred HhcCCchHHHHHHHHHHhC
Q 048321 561 ALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 561 ~~~g~~~eA~~~~~~m~~~ 579 (641)
...|++++|.+.+++..+.
T Consensus 91 ~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhc
Confidence 9999999999999988764
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.51 E-value=4e-07 Score=78.55 Aligned_cols=85 Identities=11% Similarity=0.076 Sum_probs=71.5
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCceeEEEECCE
Q 048321 516 AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRNQVKKFPGQSLFHINGK 595 (641)
Q Consensus 516 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~~~~~~~~~s~~~~~~~ 595 (641)
...|..+..++...|+++.|+..++++++++|+++.+|..++.+|...|++++|.+.+++..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l---------------- 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN---------------- 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc----------------
Confidence 3578888888999999999999999999999999999999999999999999999999887763
Q ss_pred EEEEeeCCCCCCChh-cHHHHHHHHHHHHHHc
Q 048321 596 TCTFTAEDRYHAESE-LTYPVLDCLALHSREE 626 (641)
Q Consensus 596 ~~~~~~~~~~~~~~~-~~~~~l~~l~~~~~~~ 626 (641)
+|... .+...+..+...+++.
T Consensus 127 ----------~p~~~~~~~~~l~~~~~~~~~~ 148 (162)
T 3rkv_A 127 ----------HPAAASVVAREMKIVTERRAEK 148 (162)
T ss_dssp ----------CGGGHHHHHHHHHHHHHHHHHH
T ss_pred ----------CCCCHHHHHHHHHHHHHHHHHH
Confidence 45555 6677777777666543
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.51 E-value=2.6e-06 Score=81.62 Aligned_cols=163 Identities=11% Similarity=-0.058 Sum_probs=114.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCh------hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC---CC--h
Q 048321 381 MVCNALIDMYSKCGSIGDARELFYALPE---KIV------VSWTTMIAGCALNGEFVEALDLFHQLMELDLR---PN--R 446 (641)
Q Consensus 381 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---p~--~ 446 (641)
..+...+..+...|++++|.+.+....+ ... ..+..+...+...|++++|+..+++..+.... +. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3445567778888899888888865432 111 23344556667788999999999988763211 11 2
Q ss_pred hhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCC-----hhHHHHHHHHhhccCChHHHHHHHHhCC-CCCC-----
Q 048321 447 VTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPE-----LDHYSCMADLLGRKGKLKEALDFVQSMP-IKSD----- 515 (641)
Q Consensus 447 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----- 515 (641)
.+++.+...|...|++++|...|+++.+... ..|+ ...+..++.+|.+.|++++|+..+++.. ..++
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~--~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~ 233 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLE--ALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA 233 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--HSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHH
Confidence 3777788888999999999999998873221 1222 2578888899999999999999988754 1111
Q ss_pred --hhHHHHHHHHHHHcCCHHHH-HHHHHHhHcc
Q 048321 516 --AGIWGTLLCACKIHLNIEIG-EYVAYCLFKL 545 (641)
Q Consensus 516 --~~~~~~ll~~~~~~g~~~~a-~~~~~~~~~~ 545 (641)
..++..+...+...|++++| ...+++++.+
T Consensus 234 ~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp SHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 45778888888999999999 7778887654
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.50 E-value=1.4e-07 Score=84.69 Aligned_cols=96 Identities=7% Similarity=-0.085 Sum_probs=78.6
Q ss_pred hhHHHHHHHHhhccCChHHHHHHHHhCC-CCC-Ch----------------hHHHHHHHHHHHcCCHHHHHHHHHHhHcc
Q 048321 484 LDHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DA----------------GIWGTLLCACKIHLNIEIGEYVAYCLFKL 545 (641)
Q Consensus 484 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~----------------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 545 (641)
...+..+...+.+.|++++|+..|++.. ..| +. ..|..+..++...|++++|+..+++++++
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 3445566666777777777777776654 222 22 67888889999999999999999999999
Q ss_pred CCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 546 EPHSAAPYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 546 ~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
+|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 118 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 118 DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988753
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.48 E-value=4.3e-07 Score=93.45 Aligned_cols=118 Identities=7% Similarity=-0.114 Sum_probs=94.3
Q ss_pred HHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCC-ChhHHHHHHHHHHHcCC
Q 048321 454 QACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHLN 531 (641)
Q Consensus 454 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~ 531 (641)
..+...|++++|.+.|+++.+..+ .+...|..+..+|.+.|++++|++.+++.. ..| +...|..+..++...|+
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~p----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELNP----SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCC----ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 345677888888888888886432 347788888888888899999988888865 444 56788899999999999
Q ss_pred HHHHHHHHHHhHccCCCCCccHHHHHHH--HHhcCCchHHHHHHHH
Q 048321 532 IEIGEYVAYCLFKLEPHSAAPYVEMANK--YALGGRWDGVANIRTM 575 (641)
Q Consensus 532 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~eA~~~~~~ 575 (641)
+++|+..++++++++|+++..+..++.+ +.+.|++++|.+.+++
T Consensus 90 ~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 90 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 9999999999999999999999999888 8899999999999874
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.47 E-value=1.2e-06 Score=74.01 Aligned_cols=96 Identities=10% Similarity=-0.033 Sum_probs=62.3
Q ss_pred ChhHHHHHHHHhhccCChHHHHHHHHhCC-CCCC----hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHH
Q 048321 483 ELDHYSCMADLLGRKGKLKEALDFVQSMP-IKSD----AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMA 557 (641)
Q Consensus 483 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 557 (641)
+...+..++..+.+.|++++|++.|++.. ..|+ ...|..+...+...|++++|+..++++++++|+++..+..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 34555556666666666666666666643 4444 445666666666677777777777777777776666667777
Q ss_pred HHHHhcCCchHHHHHHHHHHh
Q 048321 558 NKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 558 ~~~~~~g~~~eA~~~~~~m~~ 578 (641)
.+|...|++++|.+.+++..+
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 777777777777777666554
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.47 E-value=1.3e-06 Score=75.49 Aligned_cols=107 Identities=9% Similarity=-0.096 Sum_probs=82.4
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHH
Q 048321 448 TFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCA 525 (641)
Q Consensus 448 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~ 525 (641)
.+..+...+...|++++|...|+...+..+ .+...|..+..+|.+.|++++|+..|++.. .+.+...|..+...
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIAP----ANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 555666677777777777777777775332 356677777788888888888888887765 33357788899999
Q ss_pred HHHcCCHHHHHHHHHHhHccCCCCCccHHHHHH
Q 048321 526 CKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMAN 558 (641)
Q Consensus 526 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 558 (641)
+...|++++|+..++++++++|+++..+...+-
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 999999999999999999999999886655543
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=9.5e-06 Score=77.96 Aligned_cols=192 Identities=14% Similarity=0.084 Sum_probs=102.5
Q ss_pred HHHHHHHHHHhcC-CHHHHHHHHhhCCC---CChhHHHHHHHHHHHc-C-ChHHHHHHHHHHHHcCCCC-ChhhHHHHHH
Q 048321 382 VCNALIDMYSKCG-SIGDARELFYALPE---KIVVSWTTMIAGCALN-G-EFVEALDLFHQLMELDLRP-NRVTFLAVLQ 454 (641)
Q Consensus 382 ~~~~li~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~-g-~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~ 454 (641)
+|+.--..+...| .++++++.++.+.. ++..+|+.-...+... + ++++++++++++.+. .| |...+..-..
T Consensus 90 aWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~--dpkNy~AW~~R~w 167 (349)
T 3q7a_A 90 VWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLP--DPKNYHTWAYLHW 167 (349)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSS--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 3333333333344 35555555554433 2334455444444443 4 555666666666553 23 2334443333
Q ss_pred HHhccCChH--------HHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCC-------hHHHHHHHHhCC--CCCChh
Q 048321 455 ACTHTGFLE--------KGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGK-------LKEALDFVQSMP--IKSDAG 517 (641)
Q Consensus 455 ~~~~~g~~~--------~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-------~~~A~~~~~~~~--~~p~~~ 517 (641)
.+.+.|.++ ++++.++.+.+... -+...|+....++.+.++ ++++++.++++. .+-|..
T Consensus 168 vl~~l~~~~~~~~~~~~eELe~~~k~I~~dp----~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~S 243 (349)
T 3q7a_A 168 LYSHFSTLGRISEAQWGSELDWCNEMLRVDG----RNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVS 243 (349)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHhccccccchhhHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHH
Confidence 333333333 66666666665332 445556666666666654 567777766654 334666
Q ss_pred HHHHHHHHHHHcCCH--------------------HHHHHHHHHhHccC------CCCCccHHHHHHHHHhcCCchHHHH
Q 048321 518 IWGTLLCACKIHLNI--------------------EIGEYVAYCLFKLE------PHSAAPYVEMANKYALGGRWDGVAN 571 (641)
Q Consensus 518 ~~~~ll~~~~~~g~~--------------------~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~eA~~ 571 (641)
.|+.+-..+.+.|+. .........+.... +..+-+...++++|...|+.++|.+
T Consensus 244 aW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~ 323 (349)
T 3q7a_A 244 AWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAK 323 (349)
T ss_dssp HHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHH
Confidence 777666666555542 22222222332222 3445567789999999999999999
Q ss_pred HHHHHHhC
Q 048321 572 IRTMMKRN 579 (641)
Q Consensus 572 ~~~~m~~~ 579 (641)
+++.+.++
T Consensus 324 ~~~~l~~~ 331 (349)
T 3q7a_A 324 VFEKLSSE 331 (349)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhh
Confidence 99998643
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.46 E-value=9.5e-07 Score=72.35 Aligned_cols=109 Identities=6% Similarity=-0.195 Sum_probs=70.8
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-C-CCChhHHHHHHHH
Q 048321 448 TFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-I-KSDAGIWGTLLCA 525 (641)
Q Consensus 448 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~ll~~ 525 (641)
.+......+...|++++|...|+...+..+ .+...|..+..+|.+.|++++|+..+++.. . +.+...|..+..+
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p----~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAP----EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC----CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 344445555666666666666666664322 345566666666667777777777666654 2 3345677777777
Q ss_pred HHHcCCHHHHHHHHHHhHccC------CCCCccHHHHHHHH
Q 048321 526 CKIHLNIEIGEYVAYCLFKLE------PHSAAPYVEMANKY 560 (641)
Q Consensus 526 ~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~ 560 (641)
+...|++++|+..++++++++ |+++.....+..+.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 888888888888888888887 76665555555544
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.44 E-value=2.1e-06 Score=72.39 Aligned_cols=110 Identities=9% Similarity=-0.149 Sum_probs=76.3
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCC----hhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHH
Q 048321 448 TFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPE----LDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGT 521 (641)
Q Consensus 448 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ 521 (641)
.+..+...+...|++++|...|+...+ ..|+ ...+..+...|.+.|++++|+..+++.. .+.+...|..
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~-----~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQALG-----LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHT-----SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH-----HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 455555566666666666666666653 2344 4556666677777777777777776654 2335667778
Q ss_pred HHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHh
Q 048321 522 LLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYAL 562 (641)
Q Consensus 522 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 562 (641)
+...+...|++++|...++++++++|+++..+..+..+...
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 88888889999999999999999999887777666665543
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.41 E-value=3.2e-06 Score=75.77 Aligned_cols=153 Identities=13% Similarity=-0.033 Sum_probs=93.1
Q ss_pred hcCCHHHHHH---HHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCCC-hhhHHHHHHHHhccCChH
Q 048321 392 KCGSIGDARE---LFYALPEKIVVSWTTMIAGCALNGEFVEALDLFHQLMEL----DLRPN-RVTFLAVLQACTHTGFLE 463 (641)
Q Consensus 392 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~~~~~~g~~~ 463 (641)
..|++++|.+ .+..-......++..+...+...|++++|+..+++..+. +..|. ..++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4566666666 444433234456666777777777777777777776651 11222 235556666777777788
Q ss_pred HHHHHHHHHHhhhCCCCCC-C----hhHHHHHHHHhhccCChHHHHHHHHhCC----CCCC----hhHHHHHHHHHHHcC
Q 048321 464 KGWAISIIQYDDKGISYNP-E----LDHYSCMADLLGRKGKLKEALDFVQSMP----IKSD----AGIWGTLLCACKIHL 530 (641)
Q Consensus 464 ~a~~~~~~~~~~~~~~~~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~ll~~~~~~g 530 (641)
+|...+++..+... -.+ + ...+..+...+...|++++|...+++.. ..++ ..++..+...+...|
T Consensus 84 ~A~~~~~~al~~~~--~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 84 AARRCFLEERELLA--SLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHH--HSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHH--HcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 77777777664321 112 1 3346667777777888888877777653 1112 223466677777888
Q ss_pred CHHHHHHHHHHhHccC
Q 048321 531 NIEIGEYVAYCLFKLE 546 (641)
Q Consensus 531 ~~~~a~~~~~~~~~~~ 546 (641)
++++|...+++++++.
T Consensus 162 ~~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 162 NLLEAQQHWLRARDIF 177 (203)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 8888888888777653
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.41 E-value=5.3e-06 Score=71.42 Aligned_cols=128 Identities=13% Similarity=-0.002 Sum_probs=90.4
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHH
Q 048321 412 VSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMA 491 (641)
Q Consensus 412 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~ 491 (641)
..|..+...+...|++++|+..|++..+.. +.+..++..+...+...|++++|...++...+..+ .+...+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~----~~~~~~~~~a 88 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK----KYIKGYYRRA 88 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc----ccHHHHHHHH
Confidence 456667777778888888888888887752 22445677777778888888888888888875432 4566777888
Q ss_pred HHhhccCChHHHHHHHHhCC-C-CCChhHHHHH--HHHHHHcCCHHHHHHHHHHhHc
Q 048321 492 DLLGRKGKLKEALDFVQSMP-I-KSDAGIWGTL--LCACKIHLNIEIGEYVAYCLFK 544 (641)
Q Consensus 492 ~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l--l~~~~~~g~~~~a~~~~~~~~~ 544 (641)
.++.+.|++++|...+++.. . +.+...+..+ ...+...|++++|...+++..+
T Consensus 89 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 89 ASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 88888888888888888765 2 3344455333 3336677888888888776544
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.40 E-value=5.6e-07 Score=92.59 Aligned_cols=124 Identities=14% Similarity=0.042 Sum_probs=72.9
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccC
Q 048321 420 GCALNGEFVEALDLFHQLMELDLRPN-RVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKG 498 (641)
Q Consensus 420 ~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 498 (641)
.+.+.|++++|++.|++..+. .|+ ..++..+..++...|++++|...++++.+..+ .+...|..+..+|.+.|
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p----~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK----KYIKGYYRRAASNMALG 88 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT----TCHHHHHHHHHHHHHHT
T ss_pred HHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcC
Confidence 344566777777777776664 343 34666666667777777777777777664222 23556666677777777
Q ss_pred ChHHHHHHHHhCC-CCC-ChhHHHHHHHH--HHHcCCHHHHHHHHH-----------HhHccCCCC
Q 048321 499 KLKEALDFVQSMP-IKS-DAGIWGTLLCA--CKIHLNIEIGEYVAY-----------CLFKLEPHS 549 (641)
Q Consensus 499 ~~~~A~~~~~~~~-~~p-~~~~~~~ll~~--~~~~g~~~~a~~~~~-----------~~~~~~p~~ 549 (641)
++++|++.+++.. ..| +...+..+..+ +...|++++|+..++ ++++++|+.
T Consensus 89 ~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~ 154 (477)
T 1wao_1 89 KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY 154 (477)
T ss_dssp CHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence 7777777776654 223 33344444444 566677777777777 666666653
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.37 E-value=2e-06 Score=71.53 Aligned_cols=100 Identities=7% Similarity=-0.235 Sum_probs=70.6
Q ss_pred ChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHH
Q 048321 445 NRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTL 522 (641)
Q Consensus 445 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l 522 (641)
+...+..+...+...|++++|...|+......+ .+...|..++.++...|++++|+..+++.. .+.+...|..+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 83 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP----LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc----CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 344566666667777777777777777664322 345667777777777777777777777655 33356677788
Q ss_pred HHHHHHcCCHHHHHHHHHHhHccCCC
Q 048321 523 LCACKIHLNIEIGEYVAYCLFKLEPH 548 (641)
Q Consensus 523 l~~~~~~g~~~~a~~~~~~~~~~~p~ 548 (641)
...+...|++++|+..+++++++.|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 88888888888888888888888776
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.37 E-value=2.8e-06 Score=86.95 Aligned_cols=144 Identities=8% Similarity=-0.040 Sum_probs=103.3
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHH
Q 048321 411 VVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCM 490 (641)
Q Consensus 411 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l 490 (641)
...|..+...+.+.|++++|+..|++..+. .|+...+ . -+... ... .-....|..+
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~----------~-~~~~~----~~~-------~~~~~~~~nl 323 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL----------S-EKESK----ASE-------SFLLAAFLNL 323 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC----------C-HHHHH----HHH-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC----------C-hHHHH----HHH-------HHHHHHHHHH
Confidence 346777777788888888888888887764 3332210 0 01100 000 0124567788
Q ss_pred HHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchH
Q 048321 491 ADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDG 568 (641)
Q Consensus 491 ~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~e 568 (641)
..+|.+.|++++|+..++++. .+.+...|..+..++...|++++|+..++++++++|++...+..++.++...|++++
T Consensus 324 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~ 403 (457)
T 1kt0_A 324 AMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNE 403 (457)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999998876 344677899999999999999999999999999999999999999999999999998
Q ss_pred HHH-HHHHHHh
Q 048321 569 VAN-IRTMMKR 578 (641)
Q Consensus 569 A~~-~~~~m~~ 578 (641)
|.+ +++.|..
T Consensus 404 a~~~~~~~~f~ 414 (457)
T 1kt0_A 404 RDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHHHh
Confidence 875 4555543
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.36 E-value=2e-06 Score=70.67 Aligned_cols=91 Identities=13% Similarity=0.011 Sum_probs=63.8
Q ss_pred HHHHHhhccCChHHHHHHHHhCC-CCCC-h---hHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCC---CccHHHHHHHH
Q 048321 489 CMADLLGRKGKLKEALDFVQSMP-IKSD-A---GIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHS---AAPYVEMANKY 560 (641)
Q Consensus 489 ~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~ 560 (641)
.++..+.+.|++++|...|++.. ..|+ . ..+..+...+...|++++|+..++++++..|++ +..+..++.+|
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 34555666777777777776654 2232 2 366667777777888888888888888888877 55677788888
Q ss_pred HhcCCchHHHHHHHHHHhC
Q 048321 561 ALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 561 ~~~g~~~eA~~~~~~m~~~ 579 (641)
...|++++|.+.++++...
T Consensus 87 ~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 8888888888887777653
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.36 E-value=1.7e-06 Score=70.98 Aligned_cols=96 Identities=7% Similarity=-0.002 Sum_probs=80.1
Q ss_pred hhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCC-------CccHH
Q 048321 484 LDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHS-------AAPYV 554 (641)
Q Consensus 484 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~ 554 (641)
...+..++..+...|++++|...+++.. .+.+...+..+...+...|++++|...+++++++.|++ +..+.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 3456777788888888888888888765 34466778888888899999999999999999988876 67788
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 555 EMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 555 ~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
.++.+|...|++++|.+.+++..+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 9999999999999999999988763
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=4.8e-05 Score=72.79 Aligned_cols=178 Identities=12% Similarity=0.000 Sum_probs=108.9
Q ss_pred HHHHHHHHhhCCC---CChhHHHHHHHHHHHcC--ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCC-hHHHHHHH
Q 048321 396 IGDARELFYALPE---KIVVSWTTMIAGCALNG--EFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGF-LEKGWAIS 469 (641)
Q Consensus 396 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~-~~~a~~~~ 469 (641)
+++++.+++.+.. ++..+|+.-.-.+...| .+++++.+++++.+.. +-|...|+.-...+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 3455555555443 35556666555555555 3677777777777652 2234455555555555666 46777777
Q ss_pred HHHHhhhCCCCCCChhHHHHHHHHhhcc--------------CChHHHHHHHHhCC--CCCChhHHHHHHHHHHHc----
Q 048321 470 IIQYDDKGISYNPELDHYSCMADLLGRK--------------GKLKEALDFVQSMP--IKSDAGIWGTLLCACKIH---- 529 (641)
Q Consensus 470 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~---- 529 (641)
+.+.+..+ -+...|+....++.+. +.++++++.+.... .+-|...|+-+-..+...
T Consensus 169 ~~~I~~~p----~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~ 244 (331)
T 3dss_A 169 DSLITRNF----SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRC 244 (331)
T ss_dssp HHHHHHCS----CCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGG
T ss_pred HHHHHHCC----CCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcc
Confidence 77775433 4455555555444443 45777888877765 444677777665555444
Q ss_pred -------CCHHHHHHHHHHhHccCCCCCccHHHHHHHH---HhcCCchHHHHHHHHHHh
Q 048321 530 -------LNIEIGEYVAYCLFKLEPHSAAPYVEMANKY---ALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 530 -------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~---~~~g~~~eA~~~~~~m~~ 578 (641)
+.++++++.++++++++|++.-.+..++.+. ...|..+++...+.++.+
T Consensus 245 ~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 245 ELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 4578888889999999998744443333322 235777788888887775
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=0.00023 Score=68.42 Aligned_cols=232 Identities=11% Similarity=-0.047 Sum_probs=158.6
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHhcCcC-chHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc-C-
Q 048321 319 GYAQKGDLDEALRLFFAMEAAGELPDL-VTVLSMISGCGQSG-ALELGKWFDNYACSGGLKDNVMVCNALIDMYSKC-G- 394 (641)
Q Consensus 319 ~~~~~g~~~~A~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g- 394 (641)
...+.+..++|++++.+++.. .|+. ..++.--..+...+ .++++..+++.++... +-+..+|+--...+.+. +
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~ 139 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQ 139 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCS
T ss_pred HHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCC
Confidence 344455667888888888875 3443 33444334444455 5888888888888766 55667777766666665 6
Q ss_pred CHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChH--------HHHHHHHHHHHcCCCCChhhHHHHHHHHhccCC--
Q 048321 395 SIGDARELFYALPE---KIVVSWTTMIAGCALNGEFV--------EALDLFHQLMELDLRPNRVTFLAVLQACTHTGF-- 461 (641)
Q Consensus 395 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~-- 461 (641)
++++++++++.+.+ +|..+|+--.-.+.+.|.++ ++++.++++.+.. .-|...|+.....+.+.+.
T Consensus 140 ~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~ 218 (349)
T 3q7a_A 140 DPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAE 218 (349)
T ss_dssp CCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCC
T ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccc
Confidence 78899999988877 45667776665565556666 8999999999873 2355577777777777765
Q ss_pred -----hHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCCh--------------------HHHHHHHHhCC-C---
Q 048321 462 -----LEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKL--------------------KEALDFVQSMP-I--- 512 (641)
Q Consensus 462 -----~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~-~--- 512 (641)
++++++.++.+....+ -|...|+-+-.++.+.|+. .+..++..++. .
T Consensus 219 ~~~~~~~eELe~~~~aI~~~P----~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (349)
T 3q7a_A 219 TSSRSLQDELIYILKSIHLIP----HNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLP 294 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCC
T ss_pred cchHHHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccc
Confidence 6888999988886433 5567777777777776654 34455555544 1
Q ss_pred ----CCChhHHHHHHHHHHHcCCHHHHHHHHHHhH-ccCCCCCccHHHHHH
Q 048321 513 ----KSDAGIWGTLLCACKIHLNIEIGEYVAYCLF-KLEPHSAAPYVEMAN 558 (641)
Q Consensus 513 ----~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-~~~p~~~~~~~~l~~ 558 (641)
.+.+..+.-|+..|...|+.++|.++++.+. +.+|-....|...+.
T Consensus 295 ~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~ 345 (349)
T 3q7a_A 295 EDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRR 345 (349)
T ss_dssp SSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred cccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence 2566788888899999999999999999987 778875555554443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.32 E-value=3.8e-06 Score=66.64 Aligned_cols=99 Identities=10% Similarity=-0.025 Sum_probs=66.4
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCC---ChhHHHHHH
Q 048321 448 TFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKS---DAGIWGTLL 523 (641)
Q Consensus 448 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p---~~~~~~~ll 523 (641)
.+..+...+...|++++|...|+.+.+..+ .+...+..+..++.+.|++++|+..+++.. ..| +...|..+.
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~----~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDP----EESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCc----CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 455555566667777777777776664322 345566667777777777777777776654 333 456777777
Q ss_pred HHHHHc-CCHHHHHHHHHHhHccCCCCC
Q 048321 524 CACKIH-LNIEIGEYVAYCLFKLEPHSA 550 (641)
Q Consensus 524 ~~~~~~-g~~~~a~~~~~~~~~~~p~~~ 550 (641)
..+... |++++|++.++++++..|.++
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 777777 888888888888888777653
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.30 E-value=3.7e-06 Score=68.17 Aligned_cols=99 Identities=7% Similarity=-0.044 Sum_probs=71.7
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCC-ChhHHHHHHHH
Q 048321 448 TFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCA 525 (641)
Q Consensus 448 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~ 525 (641)
.+..+...+...|++++|...|+.+.+..+ .+...|..+..++.+.|++++|+..|++.. ..| +...|..+...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P----~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~ 94 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEP----EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS 94 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHST----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 344455567778888888888888875433 456777788888888888888888888765 344 56688888888
Q ss_pred HHHcCCHHHHHHHHHHhHccCCCCC
Q 048321 526 CKIHLNIEIGEYVAYCLFKLEPHSA 550 (641)
Q Consensus 526 ~~~~g~~~~a~~~~~~~~~~~p~~~ 550 (641)
+...|++++|+..++++++++|+++
T Consensus 95 ~~~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 95 HTNEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHC------
T ss_pred HHHcCCHHHHHHHHHHHHHhCcCCC
Confidence 8899999999999999999988753
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.28 E-value=3.7e-07 Score=73.74 Aligned_cols=82 Identities=16% Similarity=-0.022 Sum_probs=58.5
Q ss_pred cCChHHHHHHHHhCC-C---CC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHH
Q 048321 497 KGKLKEALDFVQSMP-I---KS-DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVAN 571 (641)
Q Consensus 497 ~g~~~~A~~~~~~~~-~---~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~ 571 (641)
.|++++|+..|++.. . .| +...|..+...+...|++++|+..++++++++|+++..+..++.+|...|++++|.+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 466667777776654 2 24 344677777777888888888888888888888888888888888888888888888
Q ss_pred HHHHHHh
Q 048321 572 IRTMMKR 578 (641)
Q Consensus 572 ~~~~m~~ 578 (641)
.+++..+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8777654
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.27 E-value=8.2e-06 Score=79.73 Aligned_cols=119 Identities=13% Similarity=-0.014 Sum_probs=77.8
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC----------------hhHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 048321 379 NVMVCNALIDMYSKCGSIGDARELFYALPE--KI----------------VVSWTTMIAGCALNGEFVEALDLFHQLMEL 440 (641)
Q Consensus 379 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 440 (641)
+...+..+...|.+.|++++|...|++... |+ ..+|..+..+|.+.|++++|+..|++.++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 466888899999999999999999988654 22 356666666777777777777777776664
Q ss_pred CCCCC-hhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHH
Q 048321 441 DLRPN-RVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEA 503 (641)
Q Consensus 441 g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 503 (641)
.|+ ...+..+..+|...|++++|...|+.+.+..+ .+...+..+..++.+.|++++|
T Consensus 226 --~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P----~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 226 --DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP----NNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS----SCHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHHHHHHHH
Confidence 343 33555666666666666666666666664222 2244455555555555555554
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=9.7e-05 Score=70.64 Aligned_cols=192 Identities=14% Similarity=0.043 Sum_probs=132.7
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC--CHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCC-hHHHHHHH
Q 048321 361 LELGKWFDNYACSGGLKDNVMVCNALIDMYSKCG--SIGDARELFYALPE---KIVVSWTTMIAGCALNGE-FVEALDLF 434 (641)
Q Consensus 361 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~-~~~A~~~~ 434 (641)
++++..+++.+.... +-+..+|+--.-.+.+.| .++++..+++.+.+ +|..+|+.-.-.+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 566777777777655 556677776666666667 47888888887765 566788877777777787 58999999
Q ss_pred HHHHHcCCCCChhhHHHHHHHHhcc--------------CChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhcc---
Q 048321 435 HQLMELDLRPNRVTFLAVLQACTHT--------------GFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRK--- 497 (641)
Q Consensus 435 ~~m~~~g~~p~~~t~~~ll~~~~~~--------------g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--- 497 (641)
+++.+.. +-|...|+.....+.+. +.++++++.+.......+ -|...|+-+-.++.+.
T Consensus 169 ~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P----~d~SaW~Y~r~ll~~~~~~ 243 (331)
T 3dss_A 169 DSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDP----NDQSAWFYHRWLLGAGSGR 243 (331)
T ss_dssp HHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHST----TCHHHHHHHHHHHHSSSCG
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHhccCc
Confidence 9998863 22444555544444333 457888999998886433 4566676565555555
Q ss_pred --------CChHHHHHHHHhCC-CCCChhHHHHHHHHH-----HHcCCHHHHHHHHHHhHccCCCCCccHHHHHHH
Q 048321 498 --------GKLKEALDFVQSMP-IKSDAGIWGTLLCAC-----KIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANK 559 (641)
Q Consensus 498 --------g~~~~A~~~~~~~~-~~p~~~~~~~ll~~~-----~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 559 (641)
+.++++++.++++. ..||. .|..+..+. ...|..++....+.++.+++|.....|..+..-
T Consensus 244 ~~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~ 318 (331)
T 3dss_A 244 CELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 318 (331)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 46789999998877 66765 455433322 235788899999999999999876666655443
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.27 E-value=3.8e-06 Score=79.80 Aligned_cols=113 Identities=6% Similarity=-0.201 Sum_probs=89.9
Q ss_pred ChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCC-ChhHHHHH
Q 048321 445 NRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTL 522 (641)
Q Consensus 445 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l 522 (641)
+...+..+...+...|++++|...|+.+.+..+ .+...|..+..+|.+.|++++|+..+++.. ..| +...+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 78 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP----LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 78 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 345677777888999999999999999986433 367788889999999999999999998866 444 56688888
Q ss_pred HHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHH
Q 048321 523 LCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYA 561 (641)
Q Consensus 523 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 561 (641)
..++...|++++|+..++++++++|+++..+...++...
T Consensus 79 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~ 117 (281)
T 2c2l_A 79 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL 117 (281)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH
Confidence 889999999999999999999999887655544444433
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.26 E-value=2.2e-06 Score=83.90 Aligned_cols=147 Identities=8% Similarity=-0.093 Sum_probs=83.6
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHH
Q 048321 412 VSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMA 491 (641)
Q Consensus 412 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~ 491 (641)
..|..+...+.+.|++++|+..|++.... .|+... +...|+.+++...+ ....|..+.
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l-------------~~~~~~nla 237 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV-------------KNPCHLNIA 237 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH-------------HTHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH-------------HHHHHHHHH
Confidence 46777777788888899999998888875 555432 22334444433221 113677888
Q ss_pred HHhhccCChHHHHHHHHhCC-CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHH-hcCCchH
Q 048321 492 DLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYA-LGGRWDG 568 (641)
Q Consensus 492 ~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~-~~g~~~e 568 (641)
.+|.+.|++++|+..+++.. ..| +...|..+..++...|++++|+..++++++++|+++..+..++.+.. ..+..++
T Consensus 238 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 238 ACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999876 334 67789999999999999999999999999999999999999988844 4567788
Q ss_pred HHHHHHHHHhCC
Q 048321 569 VANIRTMMKRNQ 580 (641)
Q Consensus 569 A~~~~~~m~~~~ 580 (641)
+.++++.|....
T Consensus 318 a~~~~~~~l~~~ 329 (338)
T 2if4_A 318 QKEMYKGIFKGK 329 (338)
T ss_dssp ------------
T ss_pred HHHHHHHhhCCC
Confidence 888888776543
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.22 E-value=3.7e-06 Score=83.17 Aligned_cols=138 Identities=6% Similarity=-0.109 Sum_probs=104.3
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHH
Q 048321 412 VSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMA 491 (641)
Q Consensus 412 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~ 491 (641)
..|..+...+.+.|++++|+..|++..+. .|+.. .... .+...+.. ..+...|..+.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~-------~~~~~~~~----~~~~~~~~nla 280 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAE-------DADGAKLQ----PVALSCVLNIG 280 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSC-------HHHHGGGH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccC-------hHHHHHHH----HHHHHHHHHHH
Confidence 46777778888888888888888887762 11100 0001 11111111 12356788888
Q ss_pred HHhhccCChHHHHHHHHhCC-CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHH
Q 048321 492 DLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGV 569 (641)
Q Consensus 492 ~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA 569 (641)
.+|.+.|++++|++.+++.. ..| +...|..+..++...|++++|+..++++++++|++...+..++.++...|+.+++
T Consensus 281 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 281 ACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999865 445 5678889999999999999999999999999999999999999999999988887
Q ss_pred HHH
Q 048321 570 ANI 572 (641)
Q Consensus 570 ~~~ 572 (641)
.+.
T Consensus 361 ~k~ 363 (370)
T 1ihg_A 361 EKA 363 (370)
T ss_dssp HHC
T ss_pred HHH
Confidence 653
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=3e-05 Score=81.12 Aligned_cols=168 Identities=9% Similarity=0.025 Sum_probs=136.0
Q ss_pred CHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCC----------hHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHhccC
Q 048321 395 SIGDARELFYALPE---KIVVSWTTMIAGCALNGE----------FVEALDLFHQLMELDLRPNR-VTFLAVLQACTHTG 460 (641)
Q Consensus 395 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g 460 (641)
.-++|.+.++.+.. .+..+|+.--..+...|+ ++++++.++++.+. .|.. .+|..-...+.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcc
Confidence 34567777777654 345677776666666666 89999999999986 5554 47877777888888
Q ss_pred --ChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccC-ChHHHHHHHHhCC-CCC-ChhHHHHHHHHHHHc------
Q 048321 461 --FLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKG-KLKEALDFVQSMP-IKS-DAGIWGTLLCACKIH------ 529 (641)
Q Consensus 461 --~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~------ 529 (641)
+++++.+.++.+.+..+ -+...|+.-..++.+.| .++++++.++++. ..| |...|......+...
T Consensus 122 ~~~~~~el~~~~k~l~~d~----~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 122 EPNWARELELCARFLEADE----RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred cccHHHHHHHHHHHHhhcc----ccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 67999999999997544 56778888888888889 8999999999987 444 777998888877663
Q ss_pred --------CCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchH
Q 048321 530 --------LNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDG 568 (641)
Q Consensus 530 --------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~e 568 (641)
+.++++.+.++++++++|++.++|..+..++.+.|+.++
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 567999999999999999999999999999999999665
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.22 E-value=4.6e-06 Score=68.29 Aligned_cols=105 Identities=9% Similarity=-0.011 Sum_probs=59.0
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCCh-hHHHH
Q 048321 412 VSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNR-VTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPEL-DHYSC 489 (641)
Q Consensus 412 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~-~~~~~ 489 (641)
.++..+...+.+.|++++|+..|++.++. .|+. ..|..+..+|...|++++|++.|+..++.. |+. ..+..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~-----~~~~~~~~~ 81 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVG-----RETRADYKL 81 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----HHTTCCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhC-----cccchhhHH
Confidence 34556666666667777777777666664 3443 355556666666666666666666665422 110 00000
Q ss_pred HHHHhhccCChHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCC
Q 048321 490 MADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPH 548 (641)
Q Consensus 490 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 548 (641)
+ ..+|..+...+...|++++|++.++++++..|+
T Consensus 82 ~-------------------------a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 82 I-------------------------AKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp H-------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred H-------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 0 123444555666666677777777666666654
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.21 E-value=4.8e-07 Score=72.11 Aligned_cols=94 Identities=6% Similarity=-0.080 Sum_probs=79.0
Q ss_pred CChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCC------CccH
Q 048321 482 PELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHS------AAPY 553 (641)
Q Consensus 482 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~ 553 (641)
++...+..+...+.+.|++++|++.|++.. .+.+...|..+..++...|++++|+..++++++++|++ ...+
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ 81 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 355677888889999999999999998876 44467788999999999999999999999999999998 6778
Q ss_pred HHHHHHHHhcCCchHHHHHHHH
Q 048321 554 VEMANKYALGGRWDGVANIRTM 575 (641)
Q Consensus 554 ~~l~~~~~~~g~~~eA~~~~~~ 575 (641)
..++.++...|++++|.+.+++
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHhHhhhHhHHHH
Confidence 8888888888888877665543
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.21 E-value=4.2e-06 Score=68.59 Aligned_cols=46 Identities=2% Similarity=-0.175 Sum_probs=29.8
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHh
Q 048321 516 AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYAL 562 (641)
Q Consensus 516 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 562 (641)
..+|..+...+...|++++|...++++++..| ++.....+..++..
T Consensus 79 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 79 AKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 44566666677777777777777777777777 35555555554443
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.19 E-value=3.2e-06 Score=70.70 Aligned_cols=71 Identities=11% Similarity=-0.037 Sum_probs=57.2
Q ss_pred HHHHHHHHhhccCChHHHHHHHHhCC-C-------CCC-hhHH----HHHHHHHHHcCCHHHHHHHHHHhHccCCCCCcc
Q 048321 486 HYSCMADLLGRKGKLKEALDFVQSMP-I-------KSD-AGIW----GTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAP 552 (641)
Q Consensus 486 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~-------~p~-~~~~----~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 552 (641)
.|..+..++.+.|++++|+..+++.. . .|+ ...| .....++...|++++|+..++++++++|++...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 67777777777788777777777654 4 775 4478 899999999999999999999999999998766
Q ss_pred HHHH
Q 048321 553 YVEM 556 (641)
Q Consensus 553 ~~~l 556 (641)
+.-+
T Consensus 139 ~~~~ 142 (159)
T 2hr2_A 139 TPGK 142 (159)
T ss_dssp CTTH
T ss_pred HHHH
Confidence 5444
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.18 E-value=3.8e-06 Score=72.25 Aligned_cols=78 Identities=17% Similarity=0.058 Sum_probs=62.4
Q ss_pred hhHHHHHHHHhhccCChHHHHHHHHhCC-C-CCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCC-ccHHHHHHHH
Q 048321 484 LDHYSCMADLLGRKGKLKEALDFVQSMP-I-KSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSA-APYVEMANKY 560 (641)
Q Consensus 484 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~ 560 (641)
...|..+..+|.+.|++++|+..+++.. . +.+...|..+..++...|++++|...++++++++|+++ .....+..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT 142 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 4567888888899999999999888866 3 34577889999999999999999999999999999876 4444454444
Q ss_pred H
Q 048321 561 A 561 (641)
Q Consensus 561 ~ 561 (641)
.
T Consensus 143 ~ 143 (162)
T 3rkv_A 143 E 143 (162)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.18 E-value=1.8e-05 Score=64.81 Aligned_cols=102 Identities=9% Similarity=-0.121 Sum_probs=62.4
Q ss_pred HHHHhccCChHHHHHHHHHHHhhhCCCCCCC-hhHHHHHHHHhhccCChHHHHHHHHhCC-CCCC----hhHHHHHHHHH
Q 048321 453 LQACTHTGFLEKGWAISIIQYDDKGISYNPE-LDHYSCMADLLGRKGKLKEALDFVQSMP-IKSD----AGIWGTLLCAC 526 (641)
Q Consensus 453 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~ll~~~ 526 (641)
...+...|++++|...|+.+.+..+ -.+. ...+..++.++.+.|++++|...|++.. ..|+ ...+..+...+
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELYP--NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCS--SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHCC--CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 3445556666666666666654322 1110 1355556666666677777766666654 2232 44566777777
Q ss_pred HHcCCHHHHHHHHHHhHccCCCCCccHHHH
Q 048321 527 KIHLNIEIGEYVAYCLFKLEPHSAAPYVEM 556 (641)
Q Consensus 527 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 556 (641)
...|++++|...++++++..|+++......
T Consensus 87 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~ 116 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQYPGSDAARVAQ 116 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTSHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 888888888888888888888765443333
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.17 E-value=1.1e-05 Score=82.22 Aligned_cols=166 Identities=7% Similarity=-0.149 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHc-CCCCChh----hHHHHHHHHhccCChHHHHHHHHHHHhhhCCC-CCC-Chh
Q 048321 413 SWTTMIAGCALNGEFVEALDLFHQLMEL-DLRPNRV----TFLAVLQACTHTGFLEKGWAISIIQYDDKGIS-YNP-ELD 485 (641)
Q Consensus 413 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~----t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~p-~~~ 485 (641)
++..+...|...|++++|.+.+.++... +..++.. +.+.+-..+...|.++++..++.......+.. ..+ ...
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 4677888899999999999998887752 1112221 22223334556788999999888776422100 122 245
Q ss_pred HHHHHHHHhhccCChHHHHHHHHhCC-------CCCC-hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCC-------C
Q 048321 486 HYSCMADLLGRKGKLKEALDFVQSMP-------IKSD-AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHS-------A 550 (641)
Q Consensus 486 ~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~ 550 (641)
.+..++..|...|++++|..++++.. .++. ..++..++..|...|++++|...+++++.+.|.. .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 77889999999999999999998754 1222 3477888889999999999999999987764322 2
Q ss_pred ccHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048321 551 APYVEMANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 551 ~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
..+..++.++...|+|++|.+.+.+..+
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3566788888999999999988766643
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.16 E-value=1e-05 Score=82.79 Aligned_cols=64 Identities=5% Similarity=-0.109 Sum_probs=60.3
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 516 AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 516 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
...|..+..++.+.|++++|+..++++++++|+++.+|..++.+|...|++++|...+++..+.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 4678889999999999999999999999999999999999999999999999999999998864
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.14 E-value=3.5e-06 Score=72.07 Aligned_cols=128 Identities=11% Similarity=-0.008 Sum_probs=81.2
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCC----hhHHHHHHHHhhccCChHHHHHHHHhCC----CCCC----h
Q 048321 449 FLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPE----LDHYSCMADLLGRKGKLKEALDFVQSMP----IKSD----A 516 (641)
Q Consensus 449 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~ 516 (641)
+..+...+...|++++|...++...+... -.++ ...+..+...+...|++++|.+.+++.. ..++ .
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAK--EFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH--HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHH--HhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 34444455555555555555555543211 0011 1355666677777777777777776643 1111 3
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHhHccCCC------CCccHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048321 517 GIWGTLLCACKIHLNIEIGEYVAYCLFKLEPH------SAAPYVEMANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 517 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
.++..+...+...|++++|...+++++++.+. .+..+..++.+|...|++++|.+.+++..+
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 35666777788888888888888888765322 234677889999999999999999887654
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.11 E-value=1e-05 Score=79.98 Aligned_cols=65 Identities=5% Similarity=-0.110 Sum_probs=60.4
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 515 DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 515 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
+...|..+..++.+.|++++|+..++++++++|+++..|..++.+|...|++++|.+.+++..+.
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 45678889999999999999999999999999999999999999999999999999999988763
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.11 E-value=1.9e-06 Score=69.43 Aligned_cols=92 Identities=7% Similarity=-0.058 Sum_probs=62.0
Q ss_pred cCChHHHHHHHHHHHhhhCCCCCC-ChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHH
Q 048321 459 TGFLEKGWAISIIQYDDKGISYNP-ELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIG 535 (641)
Q Consensus 459 ~g~~~~a~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a 535 (641)
.|++++|...|++..+... -.| +...+..++.+|.+.|++++|+..|++.. .+.+...+..+..++...|++++|
T Consensus 3 ~g~~~~A~~~~~~al~~~~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGL--QGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp ----CCCHHHHHHHHSSCC--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCC--CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHH
Confidence 4666677777777664210 012 34566777777777888888887777765 333566777788888888888888
Q ss_pred HHHHHHhHccCCCCCcc
Q 048321 536 EYVAYCLFKLEPHSAAP 552 (641)
Q Consensus 536 ~~~~~~~~~~~p~~~~~ 552 (641)
+..++++++..|+++..
T Consensus 81 ~~~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 81 VELLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHhCCCcHHH
Confidence 88888888888887544
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.09 E-value=1e-05 Score=79.08 Aligned_cols=150 Identities=9% Similarity=-0.026 Sum_probs=82.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHh
Q 048321 380 VMVCNALIDMYSKCGSIGDARELFYALPE--KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACT 457 (641)
Q Consensus 380 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 457 (641)
...+..+...+.+.|++++|...|++... ++... +...|+.+++...+. ...+..+..++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~~ 241 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence 44577788888999999999999998654 22211 222334444433221 136777888899
Q ss_pred ccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCCC-hhHHHHHHHH-HHHcCCHHH
Q 048321 458 HTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKSD-AGIWGTLLCA-CKIHLNIEI 534 (641)
Q Consensus 458 ~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~ll~~-~~~~g~~~~ 534 (641)
+.|++++|...++.+.+..+ .+...|..+..+|...|++++|+..|++.. ..|+ ...+..|... ....+..+.
T Consensus 242 ~~g~~~~A~~~~~~al~~~p----~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEEE----KNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999986432 457888999999999999999999999986 5554 4455555554 234567888
Q ss_pred HHHHHHHhHccCCCCC
Q 048321 535 GEYVAYCLFKLEPHSA 550 (641)
Q Consensus 535 a~~~~~~~~~~~p~~~ 550 (641)
+...++++++..|+++
T Consensus 318 a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 318 QKEMYKGIFKGKDEGG 333 (338)
T ss_dssp ----------------
T ss_pred HHHHHHHhhCCCCCCC
Confidence 8999999999999764
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.06 E-value=1.3e-05 Score=62.38 Aligned_cols=65 Identities=15% Similarity=0.027 Sum_probs=60.3
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048321 514 SDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 514 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
.++..|..+...+...|++++|+..++++++++|+++..|..++.+|...|++++|.+.+++..+
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 35678899999999999999999999999999999999999999999999999999999988765
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.06 E-value=9.5e-06 Score=82.77 Aligned_cols=125 Identities=10% Similarity=-0.011 Sum_probs=91.9
Q ss_pred HhccCChHHHHHHHHHHHhhhCCCCCCC----hhHHHHHHHHhhccCChHHHHHHHHhCC---------CCCCh-hHHHH
Q 048321 456 CTHTGFLEKGWAISIIQYDDKGISYNPE----LDHYSCMADLLGRKGKLKEALDFVQSMP---------IKSDA-GIWGT 521 (641)
Q Consensus 456 ~~~~g~~~~a~~~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~~-~~~~~ 521 (641)
+..+|++++|..++++..+.....+.|+ ..+++.|+.+|...|++++|+.++++.. ..|+. .+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4566777777777777664433222232 4567778888888888888888777753 34443 36788
Q ss_pred HHHHHHHcCCHHHHHHHHHHhHc-----cCCCCCc---cHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048321 522 LLCACKIHLNIEIGEYVAYCLFK-----LEPHSAA---PYVEMANKYALGGRWDGVANIRTMMKRNQ 580 (641)
Q Consensus 522 ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~---~~~~l~~~~~~~g~~~eA~~~~~~m~~~~ 580 (641)
|...|...|++++|+.+++++++ +.|++|. ....+..++..+|++++|+.+++.+++.-
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999998875 4677654 45578889999999999999999998753
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.04 E-value=1.3e-05 Score=60.82 Aligned_cols=81 Identities=16% Similarity=0.192 Sum_probs=67.0
Q ss_pred hhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHH
Q 048321 484 LDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYA 561 (641)
Q Consensus 484 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 561 (641)
...+..+...+.+.|++++|+..+++.. .+.+...|..+...+...|++++|+..++++++++|+++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 4567777788888888888888888765 33456688888888999999999999999999999998888999988887
Q ss_pred hcC
Q 048321 562 LGG 564 (641)
Q Consensus 562 ~~g 564 (641)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 665
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.99 E-value=2.5e-05 Score=66.63 Aligned_cols=133 Identities=11% Similarity=0.007 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CCh----hhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCC----
Q 048321 413 SWTTMIAGCALNGEFVEALDLFHQLMELDLR-PNR----VTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPE---- 483 (641)
Q Consensus 413 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~---- 483 (641)
++..+...+...|++++|+..+++..+.... ++. .++..+...+...|++++|...++...+... -.++
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~--~~~~~~~~ 88 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLAR--QLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--HTTCHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--HhCCcHHH
Confidence 4555666666667777777766666542100 111 2555566667777777777777777664322 1111
Q ss_pred hhHHHHHHHHhhccCChHHHHHHHHhCC----CCCC----hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCC
Q 048321 484 LDHYSCMADLLGRKGKLKEALDFVQSMP----IKSD----AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEP 547 (641)
Q Consensus 484 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 547 (641)
...+..+...+...|++++|.+.+++.. ..++ ...+..+...+...|++++|...+++++++..
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 3456667777778888888887777653 1111 33566677788888999999999888876543
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.98 E-value=9.4e-06 Score=65.04 Aligned_cols=78 Identities=9% Similarity=-0.001 Sum_probs=64.0
Q ss_pred HHHHHHHhCC-CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 502 EALDFVQSMP-IKS-DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 502 ~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
+|++.|++.. ..| +...|..+...+...|++++|+..++++++++|+++..|..++.+|...|++++|.+.+++..+.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3555555543 333 56688888888999999999999999999999998899999999999999999999999887653
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.96 E-value=6.9e-05 Score=76.12 Aligned_cols=159 Identities=9% Similarity=-0.073 Sum_probs=119.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCh----------------hhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCC
Q 048321 418 IAGCALNGEFVEALDLFHQLMELDLRPNR----------------VTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYN 481 (641)
Q Consensus 418 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~----------------~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 481 (641)
...+.+.|++++|++.|.++.+....... ..+..+...|...|++++|.+.+..+....+ ..
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~--~~ 88 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMM--QF 88 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH--TS
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--Hc
Confidence 34567789999999999998875322111 1367788899999999999999999886544 22
Q ss_pred CCh----hHHHHHHHHhhccCChHHHHHHHHhCC-------CCCC-hhHHHHHHHHHHHcCCHHHHHHHHHHhHccC---
Q 048321 482 PEL----DHYSCMADLLGRKGKLKEALDFVQSMP-------IKSD-AGIWGTLLCACKIHLNIEIGEYVAYCLFKLE--- 546 (641)
Q Consensus 482 p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--- 546 (641)
++. ...+.+...+...|++++|.++++... ..+. ..++..|...+...|++++|...+++++...
T Consensus 89 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 168 (434)
T 4b4t_Q 89 AKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKL 168 (434)
T ss_dssp CHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS
T ss_pred cchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhc
Confidence 332 234555666778899999999987753 2222 4477788899999999999999999887542
Q ss_pred ---CCCCccHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048321 547 ---PHSAAPYVEMANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 547 ---p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
|.....|..++.+|...|+|++|..++++...
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 169 DDKPSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp SCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 22245788999999999999999999987754
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.91 E-value=4.4e-06 Score=69.70 Aligned_cols=85 Identities=11% Similarity=-0.076 Sum_probs=61.7
Q ss_pred ccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCC----------HHHHHHHHHHhHccCCCCCccHHHHHHHHHhc
Q 048321 496 RKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLN----------IEIGEYVAYCLFKLEPHSAAPYVEMANKYALG 563 (641)
Q Consensus 496 ~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 563 (641)
|.+++++|++.++... .+.+...|..+..++...++ +++|+..++++++++|+++.+|..++++|...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 3344555555555543 22244455555555444443 67999999999999999999999999999987
Q ss_pred C-----------CchHHHHHHHHHHhCC
Q 048321 564 G-----------RWDGVANIRTMMKRNQ 580 (641)
Q Consensus 564 g-----------~~~eA~~~~~~m~~~~ 580 (641)
| ++++|.+.+++..+..
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 5 8999999999988753
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.81 E-value=6e-05 Score=57.21 Aligned_cols=68 Identities=12% Similarity=0.051 Sum_probs=60.0
Q ss_pred CCChhHHHHHHHHHHHcCC---HHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048321 513 KSDAGIWGTLLCACKIHLN---IEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRNQ 580 (641)
Q Consensus 513 ~p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~~ 580 (641)
++|+..+..+..++...++ .++|..+++++++++|+++.+...++..+...|++++|.+.|+.+.+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4567788888888765554 7999999999999999999999999999999999999999999998764
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00029 Score=73.72 Aligned_cols=148 Identities=7% Similarity=-0.070 Sum_probs=121.8
Q ss_pred CChHHHHHHHHHHHHcCCCCChh-hHHHHHHHHhccCC----------hHHHHHHHHHHHhhhCCCCCCChhHHHHHHHH
Q 048321 425 GEFVEALDLFHQLMELDLRPNRV-TFLAVLQACTHTGF----------LEKGWAISIIQYDDKGISYNPELDHYSCMADL 493 (641)
Q Consensus 425 g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~ 493 (641)
...++|++.++++... .|+.. .|+.--.++.+.|+ ++++.+.++.+.+..+ -+...|..-.-+
T Consensus 43 ~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p----K~y~aW~hR~w~ 116 (567)
T 1dce_A 43 ELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP----KSYGTWHHRCWL 116 (567)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT----TCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC----CCHHHHHHHHHH
Confidence 3457889999999986 67765 45554445555666 8999999999997544 557778888888
Q ss_pred hhccC--ChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcC-CHHHHHHHHHHhHccCCCCCccHHHHHHHHHhc-----
Q 048321 494 LGRKG--KLKEALDFVQSMP--IKSDAGIWGTLLCACKIHL-NIEIGEYVAYCLFKLEPHSAAPYVEMANKYALG----- 563 (641)
Q Consensus 494 ~~~~g--~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~----- 563 (641)
+.+.| ++++|+++++++. .+-|..+|+.-.......| .++++.+.++++++.+|.|.++|...+.++...
T Consensus 117 l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 117 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCC
T ss_pred HHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccc
Confidence 88889 6799999999987 4457889999999999999 999999999999999999999999999998875
Q ss_pred ---------CCchHHHHHHHHHHh
Q 048321 564 ---------GRWDGVANIRTMMKR 578 (641)
Q Consensus 564 ---------g~~~eA~~~~~~m~~ 578 (641)
+++++|.+.+++...
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai~ 220 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAFF 220 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHHH
T ss_pred ccccccccHHHHHHHHHHHHHHHh
Confidence 567889888877654
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00031 Score=55.27 Aligned_cols=65 Identities=9% Similarity=-0.110 Sum_probs=60.7
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 515 DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 515 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
+...|..+...+...|++++|+..++++++++|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 45678888999999999999999999999999999999999999999999999999999998864
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.70 E-value=2.9e-05 Score=64.74 Aligned_cols=87 Identities=11% Similarity=0.057 Sum_probs=54.6
Q ss_pred CChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCC----------hHHHHHHHHhCC-CCC-ChhHHHHHHHHHH
Q 048321 460 GFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGK----------LKEALDFVQSMP-IKS-DAGIWGTLLCACK 527 (641)
Q Consensus 460 g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~ 527 (641)
+.+++|.+.++...+..+ .+...|..+..++...|+ +++|+..|++.. ..| +..+|..+..+|.
T Consensus 16 ~~feeA~~~~~~Ai~l~P----~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNP----LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 345555555555554322 334555555555555544 346666666654 334 4456666777666
Q ss_pred Hc-----------CCHHHHHHHHHHhHccCCCCC
Q 048321 528 IH-----------LNIEIGEYVAYCLFKLEPHSA 550 (641)
Q Consensus 528 ~~-----------g~~~~a~~~~~~~~~~~p~~~ 550 (641)
.. |++++|+..++++++++|++.
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 55 589999999999999999863
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00017 Score=54.32 Aligned_cols=65 Identities=17% Similarity=0.169 Sum_probs=59.7
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 515 DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 515 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
+...|..+...+...|++++|+..++++++++|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34578888889999999999999999999999999999999999999999999999999988763
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00043 Score=57.28 Aligned_cols=89 Identities=4% Similarity=-0.148 Sum_probs=53.4
Q ss_pred HHHHhhccCChHHHHHHHHhCCCCCChhHHHHHHHHHHH----cCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHh---
Q 048321 490 MADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKI----HLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYAL--- 562 (641)
Q Consensus 490 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--- 562 (641)
|...|...+.+++|++.|++.....++..+..|...|.. .+|.++|...++++.+. .++.++..|+.+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g 108 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKG 108 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCC
Confidence 444444444455555555544433344555555555555 56666777777666655 446667777777777
Q ss_pred -cCCchHHHHHHHHHHhCC
Q 048321 563 -GGRWDGVANIRTMMKRNQ 580 (641)
Q Consensus 563 -~g~~~eA~~~~~~m~~~~ 580 (641)
.+++++|.+.+++..+.|
T Consensus 109 ~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 109 VVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp SCCCHHHHHHHHHHHHHTT
T ss_pred CCcCHHHHHHHHHHHHHCC
Confidence 677777777777766654
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.62 E-value=7.3e-05 Score=59.68 Aligned_cols=81 Identities=5% Similarity=-0.154 Sum_probs=55.2
Q ss_pred HHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Q 048321 464 KGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYC 541 (641)
Q Consensus 464 ~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 541 (641)
++...|+...+..+ .+...+..++..|.+.|++++|+..|++.. .+.+...|..+...+...|++++|+..+++
T Consensus 3 ~a~~~~~~al~~~p----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 3 AITERLEAMLAQGT----DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CHHHHHHHHHTTTC----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC----CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34555666654222 345666777777777777777777777755 333456777777788888888888888888
Q ss_pred hHccCCC
Q 048321 542 LFKLEPH 548 (641)
Q Consensus 542 ~~~~~p~ 548 (641)
++++.|.
T Consensus 79 al~~~~~ 85 (115)
T 2kat_A 79 GLAAAQS 85 (115)
T ss_dssp HHHHHHH
T ss_pred HHHhccc
Confidence 8887764
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00025 Score=72.28 Aligned_cols=124 Identities=7% Similarity=-0.082 Sum_probs=81.2
Q ss_pred HHHHcCChHHHHHHHHHHHHc---CCCCCh----hhHHHHHHHHhccCChHHHHHHHHHHHhh----hCCCCCCC-hhHH
Q 048321 420 GCALNGEFVEALDLFHQLMEL---DLRPNR----VTFLAVLQACTHTGFLEKGWAISIIQYDD----KGISYNPE-LDHY 487 (641)
Q Consensus 420 ~~~~~g~~~~A~~~~~~m~~~---g~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~~~p~-~~~~ 487 (641)
.+...|++++|+.++++.++. -+.|+. .+++.+..+|...|++++|..++++..+. .|. -.|+ ..++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~-~Hp~~a~~l 396 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHH-NNAQLGMAV 396 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCT-TCHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHH
Confidence 345677888888877776652 122332 26777777888888888888877776632 331 1222 4567
Q ss_pred HHHHHHhhccCChHHHHHHHHhCC---------CCCChh-HHHHHHHHHHHcCCHHHHHHHHHHhHc
Q 048321 488 SCMADLLGRKGKLKEALDFVQSMP---------IKSDAG-IWGTLLCACKIHLNIEIGEYVAYCLFK 544 (641)
Q Consensus 488 ~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~ 544 (641)
+.|..+|...|++++|+.++++.. ..|+.. +...+..++...+.+++|+.+++++.+
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888887753 334333 333444555677888888888887754
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=6e-05 Score=75.70 Aligned_cols=89 Identities=11% Similarity=0.022 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhHcc-----CCCCC---ccHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCceeE
Q 048321 518 IWGTLLCACKIHLNIEIGEYVAYCLFKL-----EPHSA---APYVEMANKYALGGRWDGVANIRTMMKRNQVKKFPGQSL 589 (641)
Q Consensus 518 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~~---~~~~~l~~~~~~~g~~~eA~~~~~~m~~~~~~~~~~~s~ 589 (641)
+++.|...|...|++++|+.++++++++ .|++| ..+..|+.+|..+|++++|..++++..+. ..+..|
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i-~~~~lG--- 406 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDI-MRVTHG--- 406 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHHHTC---
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HHHhcC---
Confidence 5677777777788888888887777643 34444 46788999999999999999999887652 111112
Q ss_pred EEECCEEEEEeeCCCCCCChhcHHHHHHHHHHHHH
Q 048321 590 FHINGKTCTFTAEDRYHAESELTYPVLDCLALHSR 624 (641)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 624 (641)
..||...+++..|.....+|+
T Consensus 407 --------------~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 407 --------------REHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp --------------TTSHHHHHHHHHHHHHHHHHH
T ss_pred --------------CCChHHHHHHHHHHHHHHHHh
Confidence 369999999999998888775
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00035 Score=57.53 Aligned_cols=63 Identities=6% Similarity=-0.156 Sum_probs=28.0
Q ss_pred ChhHHHHHHHHHHHcC---CHHHHHHHHHHhHccC-C-CCCccHHHHHHHHHhcCCchHHHHHHHHHH
Q 048321 515 DAGIWGTLLCACKIHL---NIEIGEYVAYCLFKLE-P-HSAAPYVEMANKYALGGRWDGVANIRTMMK 577 (641)
Q Consensus 515 ~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~ 577 (641)
+..+...+.+++.+.+ +.++|+.+++.+++.+ | ++...+..++-.|.+.|++++|.+.++.+.
T Consensus 31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL 98 (152)
T 1pc2_A 31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLL 98 (152)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3334444444444443 3334444444444444 3 223444444444444444444444444444
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=7e-05 Score=75.05 Aligned_cols=82 Identities=9% Similarity=-0.060 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhHcc-----CCCCC---ccHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCceeE
Q 048321 518 IWGTLLCACKIHLNIEIGEYVAYCLFKL-----EPHSA---APYVEMANKYALGGRWDGVANIRTMMKRNQVKKFPGQSL 589 (641)
Q Consensus 518 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~~---~~~~~l~~~~~~~g~~~eA~~~~~~m~~~~~~~~~~~s~ 589 (641)
+++.|..+|...|++++|+.++++++++ .|++| ..|..|+.+|..+|++++|..++++..+.- .+..|
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~-~~~lG--- 417 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIM-EVAHG--- 417 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHHTC---
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH-HHHcC---
Confidence 5677777777777777777777777642 44444 467789999999999999999988876521 11111
Q ss_pred EEECCEEEEEeeCCCCCCChhcHHHHHH
Q 048321 590 FHINGKTCTFTAEDRYHAESELTYPVLD 617 (641)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 617 (641)
..||...+++..|+
T Consensus 418 --------------~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 418 --------------KDHPYISEIKQEIE 431 (433)
T ss_dssp --------------TTCHHHHHHHHHHH
T ss_pred --------------CCChHHHHHHHHHh
Confidence 25888887776654
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00051 Score=52.78 Aligned_cols=63 Identities=14% Similarity=0.081 Sum_probs=34.2
Q ss_pred HHHhhccCChHHHHHHHHhCC-CCC-Chh-HHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccH
Q 048321 491 ADLLGRKGKLKEALDFVQSMP-IKS-DAG-IWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPY 553 (641)
Q Consensus 491 ~~~~~~~g~~~~A~~~~~~~~-~~p-~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 553 (641)
+..+.+.|++++|+..+++.. ..| +.. .|..+...+...|++++|+..++++++++|+++..+
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 344555566666666655543 222 334 555555555556666666666666666666554443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0047 Score=59.22 Aligned_cols=63 Identities=13% Similarity=0.011 Sum_probs=33.1
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048321 515 DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 515 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
++.++..+...+...|++++|...+++++.++|+ ...|..++.++.-.|++++|.+.+++...
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4444444444444445555555555555555543 34445555555555555555555554433
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0011 Score=54.75 Aligned_cols=113 Identities=11% Similarity=-0.027 Sum_probs=92.6
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhc----cCC
Q 048321 424 NGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGR----KGK 499 (641)
Q Consensus 424 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~ 499 (641)
.+++++|++.|++..+.| .|+.. +...|...+.+++|.+.|+...+ . -+...+..|..+|.. .++
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~-~-----g~~~a~~~Lg~~y~~G~g~~~d 76 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACE-L-----NSGNGCRFLGDFYENGKYVKKD 76 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHH-T-----TCHHHHHHHHHHHHHCSSSCCC
T ss_pred ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHc-C-----CCHHHHHHHHHHHHcCCCCCcc
Confidence 356889999999999987 34433 66677777889999999999884 2 366778888888887 889
Q ss_pred hHHHHHHHHhCCCCCChhHHHHHHHHHHH----cCCHHHHHHHHHHhHccCC
Q 048321 500 LKEALDFVQSMPIKSDAGIWGTLLCACKI----HLNIEIGEYVAYCLFKLEP 547 (641)
Q Consensus 500 ~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p 547 (641)
+++|++.|++.....++..+..|...|.. .+|.++|...++++.+...
T Consensus 77 ~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 77 LRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999999998755678888888888888 8999999999999988743
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.001 Score=66.54 Aligned_cols=93 Identities=11% Similarity=-0.012 Sum_probs=59.3
Q ss_pred cCChHHHHHHHHHHHhhhCCCCCCC----hhHHHHHHHHhhccCChHHHHHHHHhCC---------CCCCh-hHHHHHHH
Q 048321 459 TGFLEKGWAISIIQYDDKGISYNPE----LDHYSCMADLLGRKGKLKEALDFVQSMP---------IKSDA-GIWGTLLC 524 (641)
Q Consensus 459 ~g~~~~a~~~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~~-~~~~~ll~ 524 (641)
.|++++|..++++..+.....+.|+ ..+++.|..+|...|++++|+.++++.. ..|+. .+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 4566666666666554322222233 3456677777777777777777776643 33443 36778888
Q ss_pred HHHHcCCHHHHHHHHHHhHcc-----CCCCCc
Q 048321 525 ACKIHLNIEIGEYVAYCLFKL-----EPHSAA 551 (641)
Q Consensus 525 ~~~~~g~~~~a~~~~~~~~~~-----~p~~~~ 551 (641)
.|...|++++|+.++++++++ .|++|.
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~ 422 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPY 422 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHcCCCChH
Confidence 888888888888888887753 566543
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00098 Score=51.13 Aligned_cols=87 Identities=13% Similarity=0.022 Sum_probs=55.3
Q ss_pred HHHHHhccCChHHHHHHHHHHHhhhCCCCCCChh-HHHHHHHHhhccCChHHHHHHHHhCC-CCCC-hhHHHHHHHHHHH
Q 048321 452 VLQACTHTGFLEKGWAISIIQYDDKGISYNPELD-HYSCMADLLGRKGKLKEALDFVQSMP-IKSD-AGIWGTLLCACKI 528 (641)
Q Consensus 452 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~ll~~~~~ 528 (641)
....+...|++++|...|+.+.+..+ .+.. .+..+..+|.+.|++++|++.|++.. ..|+ ...+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p----~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~------- 74 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEP----VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR------- 74 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCS----STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH-------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCC----CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH-------
Confidence 34456677788888888887775322 3455 67777777778888888888777765 3343 333311
Q ss_pred cCCHHHHHHHHHHhHccCCCCC
Q 048321 529 HLNIEIGEYVAYCLFKLEPHSA 550 (641)
Q Consensus 529 ~g~~~~a~~~~~~~~~~~p~~~ 550 (641)
+.+.++...++++...+|+++
T Consensus 75 -~~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 75 -KMVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp -HHHHHHHHHHCCTTHHHHCCS
T ss_pred -HHHHHHHHHHHHHhccCcccc
Confidence 455666666666666666543
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0022 Score=64.29 Aligned_cols=96 Identities=11% Similarity=-0.123 Sum_probs=53.7
Q ss_pred hccCChHHHHHHHHHHHhhhCCCCCCC----hhHHHHHHHHhhccCChHHHHHHHHhCC---------CCCCh-hHHHHH
Q 048321 457 THTGFLEKGWAISIIQYDDKGISYNPE----LDHYSCMADLLGRKGKLKEALDFVQSMP---------IKSDA-GIWGTL 522 (641)
Q Consensus 457 ~~~g~~~~a~~~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~~-~~~~~l 522 (641)
.+.|++++|..++++..+.....+.|+ ..+++.++.+|...|++++|+.+++++. ..|+. .+++.|
T Consensus 298 ~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nL 377 (429)
T 3qwp_A 298 KAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKV 377 (429)
T ss_dssp HHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred HhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHH
Confidence 344555555555555543222112222 2345555566666666666666655532 23332 356777
Q ss_pred HHHHHHcCCHHHHHHHHHHhHc-----cCCCCCcc
Q 048321 523 LCACKIHLNIEIGEYVAYCLFK-----LEPHSAAP 552 (641)
Q Consensus 523 l~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~ 552 (641)
...|...|++++|+.+++++++ +.|++|.+
T Consensus 378 a~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 412 (429)
T 3qwp_A 378 GKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLI 412 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHH
Confidence 7777888888888888777765 35665543
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0047 Score=59.22 Aligned_cols=154 Identities=13% Similarity=-0.046 Sum_probs=104.8
Q ss_pred HHHHHHHHhhCCCCChhHHHHHHHHHHH--cCC---hHHHHHHHHHHHHcCCCCChh-hHHHHHHHHhc---cC-----C
Q 048321 396 IGDARELFYALPEKIVVSWTTMIAGCAL--NGE---FVEALDLFHQLMELDLRPNRV-TFLAVLQACTH---TG-----F 461 (641)
Q Consensus 396 ~~~A~~~~~~~~~~~~~~~~~li~~~~~--~g~---~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~---~g-----~ 461 (641)
..++.......+ .+...|...+.+... .++ ..+|..+|++..+. .|+.. .+..+..+|.- .+ .
T Consensus 180 ~~e~~r~~~~~p-~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~ 256 (372)
T 3ly7_A 180 QRMQETLQKILP-HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQ 256 (372)
T ss_dssp HHHHHHHHHHSC-SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHhccCC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhh
Confidence 334444444433 477888888876543 333 47899999999986 78764 55555555531 11 1
Q ss_pred hHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCCChhHHHHHHHHHHHcCCHHHHHHHHH
Q 048321 462 LEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKSDAGIWGTLLCACKIHLNIEIGEYVAY 540 (641)
Q Consensus 462 ~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 540 (641)
.....+.+........ ...+...|..+...+...|++++|...++++. ..|+...|..+...+...|+.++|.+.++
T Consensus 257 ~~~l~~a~~a~~a~~~--~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~ 334 (372)
T 3ly7_A 257 LAALNTEIDNIVTLPE--LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYL 334 (372)
T ss_dssp HHHHHHHHHHHHTCGG--GTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccc--CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 1111122222211112 34667888888887888899999999999987 56887788778888899999999999999
Q ss_pred HhHccCCCCCccHHH
Q 048321 541 CLFKLEPHSAAPYVE 555 (641)
Q Consensus 541 ~~~~~~p~~~~~~~~ 555 (641)
+++.++|..+ .|..
T Consensus 335 ~AlrL~P~~~-t~~~ 348 (372)
T 3ly7_A 335 TAFNLRPGAN-TLYW 348 (372)
T ss_dssp HHHHHSCSHH-HHHH
T ss_pred HHHhcCCCcC-hHHH
Confidence 9999999853 4443
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=97.06 E-value=0.061 Score=42.40 Aligned_cols=140 Identities=12% Similarity=-0.020 Sum_probs=99.0
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChH
Q 048321 422 ALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLK 501 (641)
Q Consensus 422 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 501 (641)
...|..++..++..+.... .+..-++.++.-....-+-+-..+.++.+-+-+. ...+|++.
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFD----------------is~C~NlK 78 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFD----------------LDKCQNLK 78 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSC----------------GGGCSCTH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcC----------------cHhhhcHH
Confidence 3457777777777777653 2344555555544444555555555555543332 34567777
Q ss_pred HHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 048321 502 EALDFVQSMPIKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRNQV 581 (641)
Q Consensus 502 ~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~~~ 581 (641)
.....+-.+. .+...+..-+......|..++-.++...++.-+|-+|+...-++++|.+.|+..+|.+++.+..++|+
T Consensus 79 rVi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 79 SVVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 7777666654 24445666778888999999999999997666666799999999999999999999999999999997
Q ss_pred c
Q 048321 582 K 582 (641)
Q Consensus 582 ~ 582 (641)
+
T Consensus 157 k 157 (172)
T 1wy6_A 157 K 157 (172)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0027 Score=48.86 Aligned_cols=63 Identities=13% Similarity=0.089 Sum_probs=39.5
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHhccCChHHHHHHHHHHHh
Q 048321 410 IVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPN-RVTFLAVLQACTHTGFLEKGWAISIIQYD 474 (641)
Q Consensus 410 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 474 (641)
+...|..+...|...|++++|+..|++..+. .|+ ...+..+..+|...|++++|.+.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4455666666666667777777777666664 343 33555666666666777777666666654
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.00 E-value=2e-05 Score=76.65 Aligned_cols=438 Identities=10% Similarity=0.095 Sum_probs=247.3
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHhHHHHHHhhccCcCCCChhHHHHHhhc
Q 048321 21 QWNSQIREAVNKNEAHKTLLLFRQMKQNDIEPNNLTFPFIAKACAKLSDLIYSQMIHGHIVKSPFVKCDRLDCAYKIFDE 100 (641)
Q Consensus 21 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~A~~~f~~ 100 (641)
.|..|-.+....+++.+|++.|-+. -|+..|..++.++.+.|.+ ++-.+.+.-
T Consensus 56 VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~---------------------edLv~yL~M 108 (624)
T 3lvg_A 56 VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNW---------------------EELVKYLQM 108 (624)
T ss_dssp CSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCC---------------------TTHHHHHHT
T ss_pred HHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCH---------------------HHHHHHHHH
Confidence 5888889998888888888766332 2566778888888555444 333333322
Q ss_pred cC--CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHHcCCCChhH
Q 048321 101 MA--VRDVASWNAMLVGFAQMGFLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSV 178 (641)
Q Consensus 101 ~~--~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 178 (641)
.. .++...=+.|+-+|++.++..+-.+++ -.||..-...+-.-|...|.++.|+-+|.. ..-
T Consensus 109 aRk~~ke~~IDteLi~ayAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~---------isN 172 (624)
T 3lvg_A 109 ARKKARESYVETELIFALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNN---------VSN 172 (624)
T ss_dssp TSTTCCSTTTTHHHHHHHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGG---------SCC
T ss_pred HHHHhcccccHHHHHHHHHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHh---------Ccc
Confidence 22 235556678888999988866533322 247777777888888888888887766653 233
Q ss_pred HHHHHHHhHcCCChhHHHHHHhcccCCCCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCC
Q 048321 179 CNTWISSYAKCDDLKMAELVFCGIEERLRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVVSLLSSFVCPE 258 (641)
Q Consensus 179 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 258 (641)
|..|...+.+.|++..|.+.-++. .++.+|-.+-.+|...+.+.-|.-.--.++- ....+..++..|-..|
T Consensus 173 ~akLAstLV~L~~yq~AVdaArKA----ns~ktWKeV~~ACvd~~EfrLAqicGLniIv-----hadeL~elv~~YE~~G 243 (624)
T 3lvg_A 173 FGRLASTLVHLGEYQAAVDGARKA----NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV-----HADELEELINYYQDRG 243 (624)
T ss_dssp CTTTSSSSSSCSGGGSSTTTTTTC----CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-----CSSCCSGGGSSSSTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc----CChhHHHHHHHHHhCchHHHHHHHhcchhcc-----cHHHHHHHHHHHHhCC
Confidence 555666677777777766543333 6788999999999999998877655444432 2233445667788899
Q ss_pred chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC----CCC-------CcchHHHHHHHHHhCCChh
Q 048321 259 ALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGI----CDR-------TRVSWTAMISGYAQKGDLD 327 (641)
Q Consensus 259 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~-------~~~~~~~li~~~~~~g~~~ 327 (641)
.+++-..+++...... .....+++-|.-.|+|- +.++..+.++.. .-| ....|.-++-.|++..+++
T Consensus 244 ~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~D 321 (624)
T 3lvg_A 244 YFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYD 321 (624)
T ss_dssp CCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHH
T ss_pred CHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHH
Confidence 9999888887766322 35678899999999885 455555554433 222 3457889999999888888
Q ss_pred HHHHHHHHHHHc-----------C---CCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 048321 328 EALRLFFAMEAA-----------G---ELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKC 393 (641)
Q Consensus 328 ~A~~~~~~m~~~-----------~---~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 393 (641)
.|.... .+. . -..|...|-..|.-|....-. .-..++.-+ ...+.+ +..++.+.+.
T Consensus 322 nA~ltM---i~h~~~Aw~h~~Fkdii~KVaN~EiyYKAi~FYL~e~P~-lL~DLL~vL-~prlDh-----~RvV~~~~k~ 391 (624)
T 3lvg_A 322 NAIITM---MNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPL-LLNDLLMVL-SPRLDH-----TRAVNYFSKV 391 (624)
T ss_dssp HHHHTT---TSCHHHHCCGGGGTTTGGGCSCSHHHHHHHHHHTTSCCT-TSHHHHHHH-CTTCCS-----TTTHHHHHTT
T ss_pred HHHHHH---HhCChhhccHHHHHHHHHHcchHHHHHHHHHHHHHhChH-HHHHHHHhc-cccCCh-----HHHHHHHHhc
Confidence 775432 111 0 012333333333333322110 000111110 111111 1234556666
Q ss_pred CCHHHHHHHHhhCCCCChhHH-HHHHHHHHHcCChHHHH------------HHHHHHHHcCCCCChhhHHHHHH-HHhcc
Q 048321 394 GSIGDARELFYALPEKIVVSW-TTMIAGCALNGEFVEAL------------DLFHQLMELDLRPNRVTFLAVLQ-ACTHT 459 (641)
Q Consensus 394 g~~~~A~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~------------~~~~~m~~~g~~p~~~t~~~ll~-~~~~~ 459 (641)
|++.-....+......|...- .++-..|....+++.-. .+-+++.+. +..-|..+.. .|.+.
T Consensus 392 ~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEkH----eL~eFRrIAA~LYkkn 467 (624)
T 3lvg_A 392 KQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKH----ELIEFRRIAAYLFKGN 467 (624)
T ss_dssp TCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHTC----SSHHHHHHHHHHHHTT
T ss_pred CCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccHHHHHHHHhhC----chHHHHHHHHHHHHhc
Confidence 666666666666666554433 34455566666654322 222222221 2223333322 45556
Q ss_pred CChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHH
Q 048321 460 GFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHLNIEIGEYV 538 (641)
Q Consensus 460 g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 538 (641)
++++++..+.++ .+ +-.| -|+.-+..|+.+-|.++++-.....+...+.+.+-.|...=+.+.++++
T Consensus 468 ~rw~qsi~l~Kk----Dk--lykD------AietAa~S~~~elaeeLL~yFv~~g~~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 468 NRWKQSVELCKK----DS--LYKD------AMQYASESKDTELAEELLQWFLQEEKRECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp CHHHHHSSCSST----TC--CTTG------GGTTTTTCCCTTHHHHHHHHHHHHCSTHHHHHHHHHTSSSSSCHHHHHH
T ss_pred ccHHHHHHHHHh----cc--cHHH------HHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHHHhhccChHHHHHH
Confidence 666665544221 11 1111 1233344455444444444333223334455555555555555555544
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0035 Score=57.54 Aligned_cols=87 Identities=9% Similarity=0.076 Sum_probs=67.6
Q ss_pred hHHHHHHHHhCC-CCCC---hhHHHHHHHHHHH-----cCCHHHHHHHHHHhHccCCCC-CccHHHHHHHHHhc-CCchH
Q 048321 500 LKEALDFVQSMP-IKSD---AGIWGTLLCACKI-----HLNIEIGEYVAYCLFKLEPHS-AAPYVEMANKYALG-GRWDG 568 (641)
Q Consensus 500 ~~~A~~~~~~~~-~~p~---~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~e 568 (641)
..+|...+++.. ..|+ ...|..|...|.. -|+.++|+++|+++++++|+. ..+++.+++.|++. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 345555555544 4555 5577777777777 489999999999999999974 99999999999985 99999
Q ss_pred HHHHHHHHHhCCCccCCc
Q 048321 569 VANIRTMMKRNQVKKFPG 586 (641)
Q Consensus 569 A~~~~~~m~~~~~~~~~~ 586 (641)
|.+.+++.........|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999988876543343
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.69 E-value=0.00057 Score=66.77 Aligned_cols=237 Identities=11% Similarity=0.082 Sum_probs=144.0
Q ss_pred ChhHHHHHHHHhHcCCChhHHHHHHhcccCCCCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHh
Q 048321 175 DVSVCNTWISSYAKCDDLKMAELVFCGIEERLRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVVSLLSSF 254 (641)
Q Consensus 175 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 254 (641)
.+.+|..|..++...+++.+|++-|-+. .|+..|..+|.+..+.|.+++-+..+.-.++.. -+...=+.|+-+|
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA----~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ay 126 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFAL 126 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC----SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC----CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHH
Confidence 3445666666666666666665544332 455556666666666666666666555444332 2223334556666
Q ss_pred cCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC------------------------CCCCc
Q 048321 255 VCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGI------------------------CDRTR 310 (641)
Q Consensus 255 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~------------------------~~~~~ 310 (641)
++.+++.+-++++. .|+..-...+.+-|...|.++.|.-+|..+ ...++
T Consensus 127 Ak~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ 199 (624)
T 3lvg_A 127 AKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANST 199 (624)
T ss_dssp HTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSS
T ss_pred HhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCCh
Confidence 66665544333221 244444445555555666666665555444 12367
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 048321 311 VSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMY 390 (641)
Q Consensus 311 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 390 (641)
.+|-.+-.+|...+.+.-|.-.--.++- .||. +..++..|-..|.+++-..+++.-.... .....+++-|.-.|
T Consensus 200 ktWKeV~~ACvd~~EfrLAqicGLniIv---hade--L~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILY 273 (624)
T 3lvg_A 200 RTWKEVCFACVDGKEFRLAQMCGLHIVV---HADE--LEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILY 273 (624)
T ss_dssp CSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSSC--CSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCchHHHHHHHhcchhcc---cHHH--HHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHH
Confidence 7999999999999998877665444442 2221 2235667888888888888877766322 45677888888888
Q ss_pred HhcCCHHHHHHHHhhCCC----C-------ChhHHHHHHHHHHHcCChHHHH
Q 048321 391 SKCGSIGDARELFYALPE----K-------IVVSWTTMIAGCALNGEFVEAL 431 (641)
Q Consensus 391 ~~~g~~~~A~~~~~~~~~----~-------~~~~~~~li~~~~~~g~~~~A~ 431 (641)
+|- ++++-.+.++.... | ....|.-++-.|.+-.+++.|.
T Consensus 274 sKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 274 SKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred Hhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 875 45555555544332 2 3457999999999888888775
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.023 Score=42.71 Aligned_cols=76 Identities=9% Similarity=-0.017 Sum_probs=58.0
Q ss_pred CCChhHHHHHHHHhhccCC---hHHHHHHHHhCC-CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHH
Q 048321 481 NPELDHYSCMADLLGRKGK---LKEALDFVQSMP-IKS-DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVE 555 (641)
Q Consensus 481 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 555 (641)
.++...+..+..++...++ .++|..++++.. ..| ++..+..+...+...|++++|+..++++++.+|. ......
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~~~~ 81 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLDRVT 81 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCCHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CccHHH
Confidence 3567778888877765544 689999998876 445 5667778888899999999999999999999998 444444
Q ss_pred HH
Q 048321 556 MA 557 (641)
Q Consensus 556 l~ 557 (641)
+.
T Consensus 82 i~ 83 (93)
T 3bee_A 82 II 83 (93)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0084 Score=47.35 Aligned_cols=68 Identities=12% Similarity=-0.070 Sum_probs=31.6
Q ss_pred CChhHHHHHHHHhhccCChHH---HHHHHHhCCC-C-C--ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCC
Q 048321 482 PELDHYSCMADLLGRKGKLKE---ALDFVQSMPI-K-S--DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHS 549 (641)
Q Consensus 482 p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~-~-p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 549 (641)
|+..+--.+.-++.+..+..+ ++.++++... . | .-...-.|.-++.+.|+++.|.+.++.+++.+|+|
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n 107 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN 107 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCC
Confidence 444444444555555554433 5555555431 1 2 11122333444555555555555555555555553
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.31 E-value=0.012 Score=48.40 Aligned_cols=85 Identities=13% Similarity=-0.050 Sum_probs=57.6
Q ss_pred hHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccC---ChHHHHHHHHhCC-CC-C--ChhHHHHHHHHHHHcCCHHH
Q 048321 462 LEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKG---KLKEALDFVQSMP-IK-S--DAGIWGTLLCACKIHLNIEI 534 (641)
Q Consensus 462 ~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~-~~-p--~~~~~~~ll~~~~~~g~~~~ 534 (641)
+..+++.|..... .+ .++..+.-.+.-++.+.+ +.++++.++++.. .. | +...+-.|.-+|.+.|++++
T Consensus 14 l~~~~~~y~~e~~-~~---~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 14 LLKFEKKFQSEKA-AG---SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHH-TT---CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHc-cC---CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHH
Confidence 3444455554442 22 256666666666677666 4557777776654 22 4 24466677788899999999
Q ss_pred HHHHHHHhHccCCCCC
Q 048321 535 GEYVAYCLFKLEPHSA 550 (641)
Q Consensus 535 a~~~~~~~~~~~p~~~ 550 (641)
|.+.++++++++|+|.
T Consensus 90 A~~y~~~lL~ieP~n~ 105 (152)
T 1pc2_A 90 ALKYVRGLLQTEPQNN 105 (152)
T ss_dssp HHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHhcCCCCH
Confidence 9999999999999864
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.19 E-value=0.014 Score=45.04 Aligned_cols=73 Identities=7% Similarity=0.054 Sum_probs=51.8
Q ss_pred hhHHHHHHHHhhccCChHHHHHHHHhCC---------CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHH
Q 048321 484 LDHYSCMADLLGRKGKLKEALDFVQSMP---------IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYV 554 (641)
Q Consensus 484 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 554 (641)
..-+-.|+..+.+.|+++.|...++.+. ..+...++..|..++.+.|+++.|...++++++++|+++.+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 3344455666666666666666665543 0124557888889999999999999999999999999866544
Q ss_pred HH
Q 048321 555 EM 556 (641)
Q Consensus 555 ~l 556 (641)
.+
T Consensus 85 n~ 86 (104)
T 2v5f_A 85 NL 86 (104)
T ss_dssp HH
T ss_pred hH
Confidence 44
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.16 E-value=0.041 Score=60.65 Aligned_cols=98 Identities=15% Similarity=0.105 Sum_probs=59.4
Q ss_pred HhcCCHHHHHH-HHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHH
Q 048321 391 SKCGSIGDARE-LFYALPEKIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAIS 469 (641)
Q Consensus 391 ~~~g~~~~A~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 469 (641)
...+++++|.+ ++..+..+ .....++..+.+.|..++|+++.+.-.. - .......|++++|.++.
T Consensus 610 ~~~~~~~~a~~~~l~~i~~~--~~~~~~~~~l~~~~~~~~a~~~~~~~~~--------~----f~~~l~~~~~~~A~~~~ 675 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNVEGK--DSLTKIARFLEGQEYYEEALNISPDQDQ--------K----FELALKVGQLTLARDLL 675 (814)
T ss_dssp HHTTCHHHHHHHTGGGCCCH--HHHHHHHHHHHHTTCHHHHHHHCCCHHH--------H----HHHHHHHTCHHHHHHHH
T ss_pred HHhCCHHHHHHHHHhcCCch--HHHHHHHHHHHhCCChHHheecCCCcch--------h----eehhhhcCCHHHHHHHH
Confidence 44677777777 55444311 1226666667777777777765532111 1 12234567777777663
Q ss_pred HHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC
Q 048321 470 IIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP 511 (641)
Q Consensus 470 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 511 (641)
+ ...+...|..+...+.+.|+++.|.+.|..+.
T Consensus 676 ~---------~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 676 T---------DESAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp T---------TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred H---------hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 2 12456677788888888888888888877765
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.09 E-value=0.08 Score=42.53 Aligned_cols=65 Identities=5% Similarity=-0.103 Sum_probs=34.2
Q ss_pred CChhHHHHHHHHHHHcC---CHHHHHHHHHHhHccCCC-CCccHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048321 514 SDAGIWGTLLCACKIHL---NIEIGEYVAYCLFKLEPH-SAAPYVEMANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 514 p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
|+..+-..+.+++.+.. +..+++.+++.++...|. .......|+-.+.+.|+|++|.+..+.+.+
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 44444444555554443 334555555555555552 234455555556666666666666655554
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.06 E-value=0.43 Score=40.27 Aligned_cols=129 Identities=14% Similarity=0.047 Sum_probs=75.8
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHH
Q 048321 388 DMYSKCGSIGDARELFYALPEKIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWA 467 (641)
Q Consensus 388 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 467 (641)
+....+|+++.|.++.+.+ .+...|..+......+|+++-|.+.|.+... |..+.-.|...|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3445678888888777665 4566788888888888888888888877653 3344444555666655544
Q ss_pred HHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHh
Q 048321 468 ISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHLNIEIGEYVAYCL 542 (641)
Q Consensus 468 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 542 (641)
+-+... ..| -++.-...+.-.|+++++.+++.+...-|.. ......+|-.+.|.++.+++
T Consensus 82 la~iA~-~~g--------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA------~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQ-TRE--------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLA------YAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHH-HTT--------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHH------HHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHH-HCc--------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHH------HHHHHHcCcHHHHHHHHHHh
Confidence 433333 222 1333334455567777777777665422211 11223456666666665544
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.06 E-value=0.02 Score=60.86 Aligned_cols=123 Identities=11% Similarity=0.011 Sum_probs=81.2
Q ss_pred HHHHHHHhccCC-hHHHHHHHHHHHhhhCCCCCCChhHH--HHHHHHhhccCCh-HHHHHHHHhCC---------CCC-C
Q 048321 450 LAVLQACTHTGF-LEKGWAISIIQYDDKGISYNPELDHY--SCMADLLGRKGKL-KEALDFVQSMP---------IKS-D 515 (641)
Q Consensus 450 ~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~~~p~~~~~--~~l~~~~~~~g~~-~~A~~~~~~~~---------~~p-~ 515 (641)
..++..+.-.++ ++.|..+|+.+... . |....+ ..++..+.+.+.- -+|..++.+.. .++ +
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~-~----p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~ 326 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKK-D----PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRD 326 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHH-C----GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCC
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhh-C----CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccc
Confidence 445555555555 57788888887742 2 443332 2334444444322 23444443321 111 1
Q ss_pred ----------hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHH
Q 048321 516 ----------AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMK 577 (641)
Q Consensus 516 ----------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~ 577 (641)
......-...|...|+++.|+.+++++...-|.+..+|..|+.+|...|+|+.|.-.+..++
T Consensus 327 ~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 327 ADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 11222334557788999999999999999999999999999999999999999999998875
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.77 E-value=0.17 Score=55.62 Aligned_cols=154 Identities=12% Similarity=0.076 Sum_probs=95.6
Q ss_pred HHHHhcCChhHHHH-HHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHHcCCCChhHHHHHHHHhHcCCCh
Q 048321 114 VGFAQMGFLENVLR-LFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISSYAKCDDL 192 (641)
Q Consensus 114 ~~~~~~g~~~~a~~-l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 192 (641)
......+++++|.+ ++..+ |+......++..+...|.++.|.++.+. . ..-......+|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~---~~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPD---------Q---DQKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCC---------H---HHHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCC---------c---chheehhhhcCCH
Confidence 33445788888876 44221 1112236666667777777777765421 1 1113445678999
Q ss_pred hHHHHHHhcccCCCCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCchHHHHHHHHHHHH
Q 048321 193 KMAELVFCGIEERLRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVVSLLSSFVCPEALVQGRLVHSHGIH 272 (641)
Q Consensus 193 ~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 272 (641)
++|.++.+.+ .+...|..+...+.+.|+++.|.+.|.++.. |..+...+...++.+....+-+....
T Consensus 669 ~~A~~~~~~~----~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~ 735 (814)
T 3mkq_A 669 TLARDLLTDE----SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAET 735 (814)
T ss_dssp HHHHHHHTTC----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhh----CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999988776 4578899999999999999999999988743 33444444446666655555544444
Q ss_pred hCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc
Q 048321 273 YGFDLDVSVINTLISMYSKCGDIDSARVLFDG 304 (641)
Q Consensus 273 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 304 (641)
.|. ++.-..+|.+.|++++|.+++.+
T Consensus 736 ~~~------~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 736 TGK------FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp TTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred cCc------hHHHHHHHHHcCCHHHHHHHHHH
Confidence 431 23334455666777776665544
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.33 E-value=0.022 Score=52.33 Aligned_cols=63 Identities=13% Similarity=0.044 Sum_probs=29.5
Q ss_pred HHHHHHHHhhcc-----CChHHHHHHHHhCC-CCCC--hhHHHHHHHHHHH-cCCHHHHHHHHHHhHccCCC
Q 048321 486 HYSCMADLLGRK-----GKLKEALDFVQSMP-IKSD--AGIWGTLLCACKI-HLNIEIGEYVAYCLFKLEPH 548 (641)
Q Consensus 486 ~~~~l~~~~~~~-----g~~~~A~~~~~~~~-~~p~--~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~p~ 548 (641)
.|..++..|.+. |+.++|.+.|++.. ..|+ ..++..+...++. .|+.+++.+.+++++..+|+
T Consensus 201 A~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 201 VWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 344444444442 44555555554443 3331 3344444444433 25555555555555555554
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.31 E-value=0.57 Score=39.51 Aligned_cols=127 Identities=13% Similarity=0.095 Sum_probs=74.6
Q ss_pred HHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHH
Q 048321 289 YSKCGDIDSARVLFDGICDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFD 368 (641)
Q Consensus 289 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 368 (641)
...+|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... +..+.-.|...|+.+.-..+-
T Consensus 15 AL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla 83 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQ 83 (177)
T ss_dssp HHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHH
Confidence 45677888887777665 3456788888888888888888888876532 223333344456655555544
Q ss_pred HHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 048321 369 NYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKIVVSWTTMIAGCALNGEFVEALDLFHQL 437 (641)
Q Consensus 369 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 437 (641)
+.....| . ++.-...+.-.|+++++.++|.+....+. -+......|-.+.|.++.+++
T Consensus 84 ~iA~~~g-~-----~n~af~~~l~lGdv~~~i~lL~~~~r~~e-----A~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 84 NIAQTRE-D-----FGSMLLNTFYNNSTKERSSIFAEGGSLPL-----AYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHTT-C-----HHHHHHHHHHHTCHHHHHHHHHHTTCHHH-----HHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHCc-c-----HHHHHHHHHHcCCHHHHHHHHHHCCChHH-----HHHHHHHcCcHHHHHHHHHHh
Confidence 4444444 1 33444455566777777777766654211 111122345666666666554
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=95.18 E-value=0.069 Score=42.30 Aligned_cols=63 Identities=5% Similarity=-0.113 Sum_probs=30.3
Q ss_pred hhHHHHHHHHHHHcC---CHHHHHHHHHHhHccCCC-CCccHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048321 516 AGIWGTLLCACKIHL---NIEIGEYVAYCLFKLEPH-SAAPYVEMANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 516 ~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
+.+-..+.+++.+.. +..+|+.+++.+++.+|. ....+..|+-.+.+.|++++|.+..+.+.+
T Consensus 40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 333334444444333 233455555555554442 234445555555555555555555555543
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=95.17 E-value=4.6 Score=43.98 Aligned_cols=255 Identities=12% Similarity=-0.016 Sum_probs=123.6
Q ss_pred hcCCCchHHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhcCCHHHHHHHHhcCC-CCC----------cchHHHHHHHH
Q 048321 254 FVCPEALVQGRLVHSHGIHYGFDLD--VSVINTLISMYSKCGDIDSARVLFDGIC-DRT----------RVSWTAMISGY 320 (641)
Q Consensus 254 ~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~----------~~~~~~li~~~ 320 (641)
....|+.+++..++...+..+-..+ ...-..+.-+...+|.-+++..++.... ..+ +..-.++.-++
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 3456677777666655433110112 2233334444555565556666554431 111 11122233333
Q ss_pred HhCCC-hhHHHHHHHHHHHcCCCCCHHHHH--HHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHH--hcCC
Q 048321 321 AQKGD-LDEALRLFFAMEAAGELPDLVTVL--SMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYS--KCGS 395 (641)
Q Consensus 321 ~~~g~-~~~A~~~~~~m~~~~~~p~~~t~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~--~~g~ 395 (641)
+-.|. -+++.+.+..+....- +...... .+...+...|+.+....++..+.+.. +..+...++.+++ -.|+
T Consensus 464 a~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTC
T ss_pred HhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCC
Confidence 33332 2456666666655321 1111111 22233556677777777777766532 2233333333333 5667
Q ss_pred HHHHHHHHhhCCC-CCh-hHHH---HHHHHHHHcCChHHHHHHHHHHHHcCCCCChh--hHHHHHHHHhccCChHHHHHH
Q 048321 396 IGDARELFYALPE-KIV-VSWT---TMIAGCALNGEFVEALDLFHQLMELDLRPNRV--TFLAVLQACTHTGFLEKGWAI 468 (641)
Q Consensus 396 ~~~A~~~~~~~~~-~~~-~~~~---~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~g~~~~a~~~ 468 (641)
.+.+..+.+.+.. .+. .-|. ++..+|+-.|+.....++++.+... ++.. ....+.-++...|..+.+.++
T Consensus 540 ~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d---~~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 540 QELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD---SNDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC---CcHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 6666666555542 222 2233 2334566677766555577777763 2222 222222244445665566666
Q ss_pred HHHHHhhhCCCCCCChhHHHHHHHHhhccCCh-HHHHHHHHhCCCCCChhHH
Q 048321 469 SIIQYDDKGISYNPELDHYSCMADLLGRKGKL-KEALDFVQSMPIKSDAGIW 519 (641)
Q Consensus 469 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~p~~~~~ 519 (641)
++.+.+. ..|.+..-.++.-+....|.. .+|++++..+...+|..+-
T Consensus 617 v~~L~~~----~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vr 664 (963)
T 4ady_A 617 VQLLSKS----HNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVR 664 (963)
T ss_dssp TTTGGGC----SCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHH
T ss_pred HHHHHhc----CCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHH
Confidence 6655532 235555555555555555553 5677777777655554433
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=94.88 E-value=0.21 Score=39.37 Aligned_cols=86 Identities=12% Similarity=0.065 Sum_probs=49.5
Q ss_pred CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHH---HHHHHHHHHhhhCCCCCC--ChhHHHHHHHHhhccCC
Q 048321 425 GEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEK---GWAISIIQYDDKGISYNP--ELDHYSCMADLLGRKGK 499 (641)
Q Consensus 425 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~---a~~~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~ 499 (641)
.....+.+-|.+....|. |+..+--.+..++.++..... ++.+++.+.+.. .| .....-.|.-++.|.|+
T Consensus 15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~----~p~~~Rd~lY~LAvg~yklg~ 89 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG----SKEEQRDYVFYLAVGNYRLKE 89 (126)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS----CHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC----CcchHHHHHHHHHHHHHHhhh
Confidence 334445555555555443 555555556666666665544 677777666421 13 23344455566777777
Q ss_pred hHHHHHHHHhCC-CCCC
Q 048321 500 LKEALDFVQSMP-IKSD 515 (641)
Q Consensus 500 ~~~A~~~~~~~~-~~p~ 515 (641)
+++|.+.++.+. ..|+
T Consensus 90 Y~~A~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 90 YEKALKYVRGLLQTEPQ 106 (126)
T ss_dssp HHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 777777777765 4553
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=94.77 E-value=0.15 Score=39.18 Aligned_cols=64 Identities=8% Similarity=-0.150 Sum_probs=53.5
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccC-------CCCCccHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048321 515 DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLE-------PHSAAPYVEMANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 515 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
++.....+...+...|+++.|...++++++.. +..+..+..++.+|.+.|++++|...++++..
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 34456678888999999999999999998753 23356788999999999999999999998875
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=94.69 E-value=4.9 Score=41.92 Aligned_cols=114 Identities=7% Similarity=-0.041 Sum_probs=63.3
Q ss_pred CChHHHHHHHHHHHHcCCCCChhhH----HHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCCh
Q 048321 425 GEFVEALDLFHQLMELDLRPNRVTF----LAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKL 500 (641)
Q Consensus 425 g~~~~A~~~~~~m~~~g~~p~~~t~----~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 500 (641)
.+.+.|..+|....... ..+.... ..+.......+...++...+..... . .++.....-.+....+.|++
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~e~~~r~Alr~~d~ 301 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM-R----SQSTSLIERRVRMALGTGDR 301 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH-T----CCCHHHHHHHHHHHHHHTCH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc-c----CCChHHHHHHHHHHHHCCCH
Confidence 36788888887776543 2233222 2222233344434556666665442 1 23333333344444567888
Q ss_pred HHHHHHHHhCCCCC-ChhHHH-HHHHHHHHcCCHHHHHHHHHHhHc
Q 048321 501 KEALDFVQSMPIKS-DAGIWG-TLLCACKIHLNIEIGEYVAYCLFK 544 (641)
Q Consensus 501 ~~A~~~~~~~~~~p-~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~ 544 (641)
+.|...|+.|+..+ +..-|. =+..+....|+.++|...++++.+
T Consensus 302 ~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 302 RGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 88888888887332 222222 233455677888888888888765
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=93.39 E-value=5.1 Score=37.44 Aligned_cols=169 Identities=9% Similarity=-0.023 Sum_probs=104.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHH----HHHHHHcCCCCCHHHHHHHHHHhc
Q 048321 281 VINTLISMYSKCGDIDSARVLFDGICDRTRVSWTAMISGYAQKGDLDEALRL----FFAMEAAGELPDLVTVLSMISGCG 356 (641)
Q Consensus 281 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~~~~p~~~t~~~ll~~~~ 356 (641)
.|.++..-|.+.+++++|++++..- ...+.+.|+...|-++ .+-..+.+++++..+...++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 3555666788899999999886432 3445667887666554 455566789999988888887765
Q ss_pred CcCchH-HHHHHHHHHH----HcC--CCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHc---CC
Q 048321 357 QSGALE-LGKWFDNYAC----SGG--LKDNVMVCNALIDMYSKCGSIGDARELFYALPEKIVVSWTTMIAGCALN---GE 426 (641)
Q Consensus 357 ~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---g~ 426 (641)
....-+ .=..+.+.++ +.| -.-++.....+...|.+.|++.+|+..|-.-...+...+..|+--+... |.
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~ 183 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIE 183 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCC
Confidence 533111 1123333333 333 2247788899999999999999999888733323455555555444433 43
Q ss_pred hHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhh
Q 048321 427 FVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDD 475 (641)
Q Consensus 427 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 475 (641)
..++-- ..-..++ -|...|++..|..+|+...+.
T Consensus 184 ~~e~dl--------------f~~RaVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 184 DSTVAE--------------FFSRLVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHHHH--------------HHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred cchHHH--------------HHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 333211 1122223 344568899998888877644
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=92.92 E-value=0.19 Score=40.71 Aligned_cols=100 Identities=13% Similarity=0.015 Sum_probs=52.8
Q ss_pred ChhhHHHHHHHHhccCCh------HHHHHHHHHHHhhhCCCCCCCh-hHHHHHHHH------hhccCChHHHHHHHHhCC
Q 048321 445 NRVTFLAVLQACTHTGFL------EKGWAISIIQYDDKGISYNPEL-DHYSCMADL------LGRKGKLKEALDFVQSMP 511 (641)
Q Consensus 445 ~~~t~~~ll~~~~~~g~~------~~a~~~~~~~~~~~~~~~~p~~-~~~~~l~~~------~~~~g~~~~A~~~~~~~~ 511 (641)
|..++...+....+.|+. ++.+.+|+++.... +|+. ..|...|.. +...++.++|.++|+.+.
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~----Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEAL----PPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHS----CGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcC----CccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 334677777776666776 67777777766543 3442 112222211 122355555666655553
Q ss_pred --CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCC
Q 048321 512 --IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPH 548 (641)
Q Consensus 512 --~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 548 (641)
.+.=..+|......-.++|+++.|.+++.+++++.|.
T Consensus 88 ~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 88 ANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 1111445555555555566666666666666665554
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=91.95 E-value=3.9 Score=32.46 Aligned_cols=84 Identities=11% Similarity=-0.005 Sum_probs=50.6
Q ss_pred cCCHHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHH
Q 048321 292 CGDIDSARVLFDGICDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYA 371 (641)
Q Consensus 292 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 371 (641)
||++......+-.+. .+....+.-+..+...|.-++-.+++..+.. +.+|++..+..+..+|.+.|+..++.+++.++
T Consensus 74 C~NlKrVi~C~~~~n-~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~A 151 (172)
T 1wy6_A 74 CQNLKSVVECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEA 151 (172)
T ss_dssp CSCTHHHHHHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcHHHHHHHHHHhc-chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 444444444444332 2233445556666777777777777777543 24566666777777777777777777777777
Q ss_pred HHcCCC
Q 048321 372 CSGGLK 377 (641)
Q Consensus 372 ~~~~~~ 377 (641)
-+.|++
T Consensus 152 C~kG~k 157 (172)
T 1wy6_A 152 CKKGEK 157 (172)
T ss_dssp HHTTCH
T ss_pred HHhhhH
Confidence 776643
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=91.86 E-value=1.8 Score=35.08 Aligned_cols=100 Identities=6% Similarity=0.021 Sum_probs=62.5
Q ss_pred CCCcccHHHHHHHHHhcCCh------hHHHHHHHHHHHcCCCCChhh----HHHHHHH---HhccCChhHHHHHHHHHHH
Q 048321 103 VRDVASWNAMLVGFAQMGFL------ENVLRLFYNMRLVGIQADFVT----VMGLTQA---AIHAKHLSLLKSVHSFGIH 169 (641)
Q Consensus 103 ~~~~~~~~~li~~~~~~g~~------~~a~~l~~~m~~~g~~p~~~t----~~~ll~~---~~~~~~~~~a~~~~~~~~~ 169 (641)
+.|..+|=..+...-+.|++ ++.+++|++.... ++|+... |..+.-- +...++++.|+++|+.+++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 45777888888888888998 8888888887764 6666421 2111111 1123677777777777766
Q ss_pred HcCCCChhHHHHHHHHhHcCCChhHHHHHHhcccC
Q 048321 170 IGVDADVSVCNTWISSYAKCDDLKMAELVFCGIEE 204 (641)
Q Consensus 170 ~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 204 (641)
.+-.. ..+|......-.+.|+++.|++++.....
T Consensus 89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG 122 (161)
T 4h7y_A 89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVE 122 (161)
T ss_dssp HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhc
Confidence 52222 45555555555666777777777665544
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=90.98 E-value=10 Score=35.44 Aligned_cols=131 Identities=10% Similarity=-0.008 Sum_probs=81.6
Q ss_pred HHHHHHHHhHcCCChhHHHHHHhcccCCCCCchhHHHHHHHHhcCCCchHHHHH----HHHHHHCCCCCChhhHHHHHHH
Q 048321 178 VCNTWISSYAKCDDLKMAELVFCGIEERLRTVVSWNSMVAGCTYGDKFDDSLNF----YRHMMYNGFRLDVTTVVSLLSS 253 (641)
Q Consensus 178 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~~ 253 (641)
.|.++..-|.+.+++++|.+++..- ...+.+.|+...|.++ .+...+.+++++......++..
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g-------------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l 101 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG-------------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRL 101 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH-------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 3445666678888888888876432 2245566776666554 5555667888888888877777
Q ss_pred hcCCCch-HHHHHHHHHHHH----hC--CCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 048321 254 FVCPEAL-VQGRLVHSHGIH----YG--FDLDVSVINTLISMYSKCGDIDSARVLFDGICDRTRVSWTAMISGYA 321 (641)
Q Consensus 254 ~~~~~~~-~~a~~~~~~~~~----~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 321 (641)
+.....- ..-..+...+++ .| ...++.....+...|.+.|++.+|+..|-.-...+...+..++.-+.
T Consensus 102 ~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~ 176 (312)
T 2wpv_A 102 IAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWL 176 (312)
T ss_dssp HTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence 6553321 122344444443 32 23477888899999999999999998776332223444444444333
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.37 E-value=11 Score=37.65 Aligned_cols=258 Identities=9% Similarity=-0.019 Sum_probs=125.2
Q ss_pred cCChhHHHHHHHHHHHc-----CCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHH-cCCCChhHHHHHHHHh----Hc
Q 048321 119 MGFLENVLRLFYNMRLV-----GIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHI-GVDADVSVCNTWISSY----AK 188 (641)
Q Consensus 119 ~g~~~~a~~l~~~m~~~-----g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~----~~ 188 (641)
.|+++.|++.+..+.+. ...........+++.|...++++...+.+..+.+. |..+ .....+++.+ ..
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk--~ai~~~V~~~~~~l~~ 106 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLK--LSIQYMIQKVMEYLKS 106 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSH--HHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHhc
Confidence 36788998888776543 23344556778888999999998887766655432 2211 2222333222 22
Q ss_pred CCChh--HHHHHHhcccCCCCC--------chhHHHHHHHHhcCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCC
Q 048321 189 CDDLK--MAELVFCGIEERLRT--------VVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVVSLLSSFVCPE 258 (641)
Q Consensus 189 ~g~~~--~A~~~~~~~~~~~~~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 258 (641)
....+ .-..+.+.+...... ......|...|...|++.+|.+++.++...-...+....
T Consensus 107 ~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~----------- 175 (445)
T 4b4t_P 107 SKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSE----------- 175 (445)
T ss_dssp HCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHH-----------
T ss_pred CCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHH-----------
Confidence 22222 222233332221000 011234556666667777777776666432111111100
Q ss_pred chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC--------CCC--cchHHHHHHHHHhCCChhH
Q 048321 259 ALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGIC--------DRT--RVSWTAMISGYAQKGDLDE 328 (641)
Q Consensus 259 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--------~~~--~~~~~~li~~~~~~g~~~~ 328 (641)
-..++...++.|...+++..|..++.++. .++ ...+..++..+...+++.+
T Consensus 176 -------------------kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~ 236 (445)
T 4b4t_P 176 -------------------KIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLE 236 (445)
T ss_dssp -------------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHH
T ss_pred -------------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 01233444555666666666655554431 111 1234455556666677777
Q ss_pred HHHHHHHHHHc-CCCCCHHHHH-----HHHHH-hcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc--CCHHHH
Q 048321 329 ALRLFFAMEAA-GELPDLVTVL-----SMISG-CGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKC--GSIGDA 399 (641)
Q Consensus 329 A~~~~~~m~~~-~~~p~~~t~~-----~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~A 399 (641)
|...|.+.... ....|...+. .++.. ++..++ +.. .+.........-++...+..++.+|... .+++.+
T Consensus 237 a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~-~~~-~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~ 314 (445)
T 4b4t_P 237 VAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGN-LQN-DLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIV 314 (445)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSS-TTH-HHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHH
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCc-hHH-HHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHH
Confidence 76666655431 1111221111 11111 122221 111 1222222222235677888889888764 567888
Q ss_pred HHHHhhCCCCC
Q 048321 400 RELFYALPEKI 410 (641)
Q Consensus 400 ~~~~~~~~~~~ 410 (641)
.+.|.....++
T Consensus 315 ~~~~~~~L~~~ 325 (445)
T 4b4t_P 315 QKTYEPVLNED 325 (445)
T ss_dssp HHHTCSSTTTC
T ss_pred HHHHHHHhccc
Confidence 88887766543
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=90.02 E-value=1.6 Score=32.37 Aligned_cols=63 Identities=22% Similarity=0.282 Sum_probs=49.4
Q ss_pred ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHH
Q 048321 426 EFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMAD 492 (641)
Q Consensus 426 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~ 492 (641)
+.-+..+-++.+....+.|++....+.|.||.+.+++..|.++|+.++.+.| +....|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~----~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG----PHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT----TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc----CchhhHHHHHH
Confidence 4456666677777778889999999999999999999999999999887766 44556766654
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=89.76 E-value=13 Score=34.90 Aligned_cols=168 Identities=14% Similarity=0.007 Sum_probs=103.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHH----HHHHHcCCCCCHHHHHHHHHHhc
Q 048321 281 VINTLISMYSKCGDIDSARVLFDGICDRTRVSWTAMISGYAQKGDLDEALRLF----FAMEAAGELPDLVTVLSMISGCG 356 (641)
Q Consensus 281 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~~~~p~~~t~~~ll~~~~ 356 (641)
.|.++..=|.+.+++++|++++.. -...+.+.|+...|-++- +-..+.++++|..+...++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 345566678899999999987643 234456677776655544 55566788999988888888776
Q ss_pred CcCchH-HHHHHHHHHH----HcC--CCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHH
Q 048321 357 QSGALE-LGKWFDNYAC----SGG--LKDNVMVCNALIDMYSKCGSIGDARELFYALPEKIVVSWTTMIAGCALNGEFVE 429 (641)
Q Consensus 357 ~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 429 (641)
....-+ .=..+.+.++ +.| -.-|+.....+...|.+.+++.+|+..|-.-.++.+..+..|+--+...+...+
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e 185 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHT 185 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc
Confidence 655321 1123333333 223 234677888899999999999999998853232333555555444443332111
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHh
Q 048321 430 ALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYD 474 (641)
Q Consensus 430 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 474 (641)
+|...-..++. |...+++..|..+|+...+
T Consensus 186 --------------~dlfiaRaVL~-yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 186 --------------APLYCARAVLP-YLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp --------------HHHHHHHHHHH-HHHTTCHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHHH-HHHhCCHHHHHHHHHHHHH
Confidence 12222333333 4556788888887766653
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.30 E-value=4.1 Score=33.74 Aligned_cols=27 Identities=15% Similarity=0.206 Sum_probs=16.3
Q ss_pred hHHHHHHHHhhccCChHHHHHHHHhCC
Q 048321 485 DHYSCMADLLGRKGKLKEALDFVQSMP 511 (641)
Q Consensus 485 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 511 (641)
+.---+..+|.+.|++++|+.+++.++
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 333335566666666666666666665
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=87.60 E-value=6.1 Score=45.04 Aligned_cols=81 Identities=7% Similarity=-0.006 Sum_probs=37.9
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCC-C--hhHHHHHHHHhhccCChHHHHHHHHhCC-CCCChhHHHHHHH
Q 048321 449 FLAVLQACTHTGFLEKGWAISIIQYDDKGISYNP-E--LDHYSCMADLLGRKGKLKEALDFVQSMP-IKSDAGIWGTLLC 524 (641)
Q Consensus 449 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p-~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~ll~ 524 (641)
|..++..+.+.+.++.+.++-..+.+..+ -.+ + ...|..+...+...|++++|...+-.++ ..--...+..|+.
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~--~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~cLr~LV~ 979 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKE--TDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSCLLDFVN 979 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCC--SCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcc--CCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 34455555555555555555554443222 111 1 1135555566666666666666555544 1112234444444
Q ss_pred HHHHcCC
Q 048321 525 ACKIHLN 531 (641)
Q Consensus 525 ~~~~~g~ 531 (641)
..+..|.
T Consensus 980 ~lce~~~ 986 (1139)
T 4fhn_B 980 QLTKQGK 986 (1139)
T ss_dssp HHHHHCC
T ss_pred HHHhCCC
Confidence 4444333
|
| >2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A | Back alignment and structure |
|---|
Probab=87.32 E-value=11 Score=39.39 Aligned_cols=83 Identities=11% Similarity=0.006 Sum_probs=46.4
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh---
Q 048321 316 MISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSK--- 392 (641)
Q Consensus 316 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--- 392 (641)
....+.-.|+++.|++.+... ...|.+.+...+..+.-.+- ...++..- .+ .| ..-+..||..|.+
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~---~~~lls~~--~~-~~-~lN~arLI~~Yt~~F~ 368 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI---DSSTRLTK--KP-KR-DIRFANILANYTKSFR 368 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC---CCcccccC--CC-cc-cccHHHHHHHHHHHhh
Confidence 455666789999999987754 35677777777766554442 11111110 01 12 2235667777865
Q ss_pred cCCHHHHHHHHhhCCCC
Q 048321 393 CGSIGDARELFYALPEK 409 (641)
Q Consensus 393 ~g~~~~A~~~~~~~~~~ 409 (641)
..+..+|.+.|--+..+
T Consensus 369 ~td~~~Al~Y~~li~l~ 385 (661)
T 2qx5_A 369 YSDPRVAVEYLVLITLN 385 (661)
T ss_dssp TTCHHHHHHHHHGGGGS
T ss_pred cCCHHHHHHHHHHHhcc
Confidence 57788888877766433
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.25 E-value=1.1 Score=37.15 Aligned_cols=125 Identities=14% Similarity=0.077 Sum_probs=65.1
Q ss_pred cCCCCChh--hHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCCh-------hHHHHHHHHhhccCChHHHHHHHHhC
Q 048321 440 LDLRPNRV--TFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPEL-------DHYSCMADLLGRKGKLKEALDFVQSM 510 (641)
Q Consensus 440 ~g~~p~~~--t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~ 510 (641)
.|+.|... ++..-+..+...|.++.|+-+.+.+....+ ..|+. .++..+++++...|++.+|...|++.
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~--~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSN--NNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--HSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhc--CCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 34455433 455556677777888888888777664433 23432 24566667777777777777777663
Q ss_pred C-----CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048321 511 P-----IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 511 ~-----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
. ...+..+..++ . ...... .-..+ +.+.+.-..++.+|.+.|++++|+.+++.++.
T Consensus 90 Lq~~k~l~k~~s~~~~~-~---~~ss~p-------~s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 90 LQQKKALSKTSKVRPST-G---NSASTP-------QSQCL-PSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHHHHCC-------------------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred HHHHHHHhcCCCccccc-c---ccCCCc-------ccccc-cchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 2 00011011000 0 000000 00111 22235567799999999999999999876543
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=86.94 E-value=39 Score=36.89 Aligned_cols=249 Identities=10% Similarity=-0.052 Sum_probs=132.4
Q ss_pred HHHHhcCCHHHHHHHHhcCCCC----Cc--chHHHHHHHHHhCCChhHHHHHHHHHHHcCC--C-----CCHHHHH--HH
Q 048321 287 SMYSKCGDIDSARVLFDGICDR----TR--VSWTAMISGYAQKGDLDEALRLFFAMEAAGE--L-----PDLVTVL--SM 351 (641)
Q Consensus 287 ~~~~~~g~~~~A~~~~~~~~~~----~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~-----p~~~t~~--~l 351 (641)
-+....|+.++++.+++..... +. ..-..+.-+....|..+++..++.......- . +....-. .|
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 3456678888999999887542 21 1223344456667776778888777665321 0 1111111 22
Q ss_pred HHHhcCcCchHHHHHHHHHHHHcCCCCch--hHHHHHHHHHHhcCCHHHHHHHHhhCCC-CC--hhHHHHHHHHHHHcCC
Q 048321 352 ISGCGQSGALELGKWFDNYACSGGLKDNV--MVCNALIDMYSKCGSIGDARELFYALPE-KI--VVSWTTMIAGCALNGE 426 (641)
Q Consensus 352 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~--~~~~~~li~~~~~~g~ 426 (641)
--++...++- ++...+..++... .+.. ...-+|...|.-.|+-+....++..+.+ .+ +.-.-.+.-++...|+
T Consensus 462 Gla~~GS~~e-ev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 462 GLAAMGSANI-EVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HHHSTTCCCH-HHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC
T ss_pred HHHhcCCCCH-HHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCC
Confidence 2233444443 4444444444322 1111 1122333345566777777777665432 22 2223333344557799
Q ss_pred hHHHHHHHHHHHHcCCCCChh-hHH---HHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHH
Q 048321 427 FVEALDLFHQLMELDLRPNRV-TFL---AVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKE 502 (641)
Q Consensus 427 ~~~A~~~~~~m~~~g~~p~~~-t~~---~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 502 (641)
.+.+..+.+.+... .+.. -|. .+.-+|+..|+.....+++..+..+. ..++.....+.-++.-.|+.+.
T Consensus 540 ~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~----~d~VRraAViaLGlI~~g~~e~ 612 (963)
T 4ady_A 540 QELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS----NDDVRRAAVIALGFVLLRDYTT 612 (963)
T ss_dssp GGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS----CHHHHHHHHHHHHHHTSSSCSS
T ss_pred hHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC----cHHHHHHHHHHHHhhccCCHHH
Confidence 99999898888863 3332 333 33447888899888777888887432 2344444444445555677666
Q ss_pred HHHHHHhCCCCCChhHHHHHHHH--HHHcCC-HHHHHHHHHHhHc
Q 048321 503 ALDFVQSMPIKSDAGIWGTLLCA--CKIHLN-IEIGEYVAYCLFK 544 (641)
Q Consensus 503 A~~~~~~~~~~p~~~~~~~ll~~--~~~~g~-~~~a~~~~~~~~~ 544 (641)
+..+++.+....|+.+-.....+ ....|+ ...+...+.++..
T Consensus 613 v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 613 VPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 66777655433344433333222 232333 2556666666653
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=86.78 E-value=2.4 Score=33.59 Aligned_cols=71 Identities=10% Similarity=0.017 Sum_probs=48.3
Q ss_pred CCChhHHHHHHHHhhccCCh---HHHHHHHHhCC-CCC-C-hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCc
Q 048321 481 NPELDHYSCMADLLGRKGKL---KEALDFVQSMP-IKS-D-AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAA 551 (641)
Q Consensus 481 ~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~-~~p-~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 551 (641)
.|+..+--.+.-++.+.... .+++.++++.. ..| . ...+-.|.-++.+.|+++.|.+..+.+++.+|+|..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 113 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence 45555555555556555543 35666666544 234 2 335666777899999999999999999999998643
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=86.54 E-value=8 Score=28.56 Aligned_cols=87 Identities=14% Similarity=0.025 Sum_probs=63.0
Q ss_pred chHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 048321 360 ALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKIVVSWTTMIAGCALNGEFVEALDLFHQLME 439 (641)
Q Consensus 360 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 439 (641)
..++|..|-+.+...+. ...+--.-+..+...|++++|..+.+...-||+.+|-++.. .+.|-.+++..-+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 56777777777776553 33333333556778999999999999999999999998865 467888888888878887
Q ss_pred cCCCCChhhHHH
Q 048321 440 LDLRPNRVTFLA 451 (641)
Q Consensus 440 ~g~~p~~~t~~~ 451 (641)
.| .|....|..
T Consensus 97 sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 97 SS-DPALADFAA 107 (115)
T ss_dssp CS-SHHHHHHHH
T ss_pred CC-CHHHHHHHH
Confidence 76 555555543
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=86.48 E-value=22 Score=33.49 Aligned_cols=131 Identities=11% Similarity=0.053 Sum_probs=80.5
Q ss_pred HHHHHHHhHcCCChhHHHHHHhcccCCCCCchhHHHHHHHHhcCCCchHHHHHH----HHHHHCCCCCChhhHHHHHHHh
Q 048321 179 CNTWISSYAKCDDLKMAELVFCGIEERLRTVVSWNSMVAGCTYGDKFDDSLNFY----RHMMYNGFRLDVTTVVSLLSSF 254 (641)
Q Consensus 179 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~~~ 254 (641)
|.++..-|.+.+++++|.+++-.- ...+.+.|+...|.++- +...+.++++|..+...++..+
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~G-------------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASV-------------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHH-------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 444556678888998888876432 23455667766655554 5556678888888888777777
Q ss_pred cCCCchH-HHHHHHHHHHH----hC--CCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHh
Q 048321 255 VCPEALV-QGRLVHSHGIH----YG--FDLDVSVINTLISMYSKCGDIDSARVLFDGICDRTRVSWTAMISGYAQ 322 (641)
Q Consensus 255 ~~~~~~~-~a~~~~~~~~~----~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 322 (641)
.....-+ .-..+...+++ .| ..-|+.....+...|.+.+++.+|...|-.-.++....+..++.-+..
T Consensus 105 ~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~ 179 (336)
T 3lpz_A 105 RLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYK 179 (336)
T ss_dssp TTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHH
T ss_pred HhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 6554321 12333333333 33 344677888888899999999999888742222222455444444333
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=86.13 E-value=8.5 Score=28.47 Aligned_cols=87 Identities=14% Similarity=0.045 Sum_probs=61.8
Q ss_pred chHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 048321 360 ALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKIVVSWTTMIAGCALNGEFVEALDLFHQLME 439 (641)
Q Consensus 360 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 439 (641)
..++|..|-+.+...+. ...+--.-+..+...|++++|..+.+...-||+.+|-++... +.|-.+++..-+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHh
Confidence 56777777777776553 333333334567789999999999999999999999988654 56887888777777777
Q ss_pred cCCCCChhhHHH
Q 048321 440 LDLRPNRVTFLA 451 (641)
Q Consensus 440 ~g~~p~~~t~~~ 451 (641)
.| .|....|..
T Consensus 98 sg-~p~~q~Fa~ 108 (116)
T 2p58_C 98 SQ-DPRIQTFVN 108 (116)
T ss_dssp CC-CHHHHHHHH
T ss_pred CC-CHHHHHHHH
Confidence 65 455445543
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=85.65 E-value=4.5 Score=32.48 Aligned_cols=70 Identities=10% Similarity=0.018 Sum_probs=47.5
Q ss_pred CCChhHHHHHHHHhhccCCh---HHHHHHHHhCC-CCC-C-hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCC
Q 048321 481 NPELDHYSCMADLLGRKGKL---KEALDFVQSMP-IKS-D-AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSA 550 (641)
Q Consensus 481 ~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~-~~p-~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 550 (641)
.|+..+--.+.-++.+..+. .+++.++++.. ..| + -...-.|.-++.+.|+++.|.+..+.+++.+|+|.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~ 111 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 111 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH
Confidence 35555555555566666543 35666666644 233 2 22445566789999999999999999999999863
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=85.40 E-value=3.9 Score=32.25 Aligned_cols=63 Identities=22% Similarity=0.282 Sum_probs=48.8
Q ss_pred ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHH
Q 048321 426 EFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMAD 492 (641)
Q Consensus 426 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~ 492 (641)
+.-+..+-++.+....+.|++......|.+|.+.+++..|.++|+..+.+.| +....|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~----~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG----PHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT----TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC----CchhhHHHHHH
Confidence 3445556666677777889999999999999999999999999999887766 55666776654
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=85.21 E-value=1.5 Score=43.01 Aligned_cols=60 Identities=12% Similarity=-0.064 Sum_probs=45.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048321 519 WGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 519 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
...++..+...|+.+++...++.++..+|-+-..|..+..+|.+.|+..+|.+.++....
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344556667778888888888888888887777888888888888888888887776543
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.02 E-value=8.3 Score=41.08 Aligned_cols=53 Identities=19% Similarity=0.137 Sum_probs=38.5
Q ss_pred HHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC
Q 048321 455 ACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP 511 (641)
Q Consensus 455 ~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 511 (641)
-|...|+++-|+.+-++...-.+ .+..+|..|+.+|...|+++.|+-.++.+|
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~aP----seF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELAL----DSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCS----SCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHhccCcHHHHHHHHHHHHhcCc----hhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 34567788888888777775322 347778888888888888888888888776
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=84.93 E-value=9.7 Score=28.14 Aligned_cols=86 Identities=15% Similarity=0.044 Sum_probs=58.4
Q ss_pred chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHH
Q 048321 259 ALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGICDRTRVSWTAMISGYAQKGDLDEALRLFFAMEA 338 (641)
Q Consensus 259 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 338 (641)
..++|..+-+.+...+- ...+--.-+..+...|++++|..+.+..+-||...|-+|-. .+.|..+++..-+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 44555555555555442 22222233455678899999999999999999999988765 467888888877777776
Q ss_pred cCCCCCHHHHH
Q 048321 339 AGELPDLVTVL 349 (641)
Q Consensus 339 ~~~~p~~~t~~ 349 (641)
+| .|....|.
T Consensus 97 sg-~p~~q~Fa 106 (115)
T 2uwj_G 97 SS-DPALADFA 106 (115)
T ss_dssp CS-SHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 65 45555554
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=84.50 E-value=10 Score=28.04 Aligned_cols=86 Identities=14% Similarity=0.022 Sum_probs=57.1
Q ss_pred chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHH
Q 048321 259 ALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGICDRTRVSWTAMISGYAQKGDLDEALRLFFAMEA 338 (641)
Q Consensus 259 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 338 (641)
..++|..|-+.+...+- ...+--.-+..+...|++++|..+.+..+-||...|-+|-. .+.|..+++..-+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 44555555555555442 22222233455677899999999999999999999988765 466777777777767766
Q ss_pred cCCCCCHHHHH
Q 048321 339 AGELPDLVTVL 349 (641)
Q Consensus 339 ~~~~p~~~t~~ 349 (641)
+| .|....|.
T Consensus 98 sg-~p~~q~Fa 107 (116)
T 2p58_C 98 SQ-DPRIQTFV 107 (116)
T ss_dssp CC-CHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 65 45554444
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.44 E-value=34 Score=33.96 Aligned_cols=99 Identities=13% Similarity=0.084 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHc--CCCCCh---hhHHHHHHHHhccCChHHHHHHHHHHHhhh-CCCCCCC--h
Q 048321 413 SWTTMIAGCALNGEFVEALDLFHQLMEL--DLRPNR---VTFLAVLQACTHTGFLEKGWAISIIQYDDK-GISYNPE--L 484 (641)
Q Consensus 413 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~---~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~p~--~ 484 (641)
....|...+...|++.+|..++..+... |..+.. ..+...+..|...+++.+|..++..+.... .....|+ .
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~ 218 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKL 218 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHH
Confidence 3456778888999999999999998753 222221 255666778899999999999988875211 1001222 3
Q ss_pred hHHHHHHHHhhccCChHHHHHHHHhCC
Q 048321 485 DHYSCMADLLGRKGKLKEALDFVQSMP 511 (641)
Q Consensus 485 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 511 (641)
..+.+++..+...+++.+|...|.++-
T Consensus 219 ~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 219 EYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 467888899999999999988877653
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=83.55 E-value=10 Score=34.26 Aligned_cols=123 Identities=14% Similarity=0.140 Sum_probs=60.5
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCChh-hHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccC
Q 048321 420 GCALNGEFVEALDLFHQLMELDLRPNRV-TFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKG 498 (641)
Q Consensus 420 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 498 (641)
.+.+.|+.++|++....-++. .|... .=..++.-+|-.|+++.|.+-++...+ +.|+...-..+..-+.++.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~-----l~p~~~~~a~~yr~lI~aE 78 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIK-----LFPEYLPGASQLRHLVKAA 78 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-----HCGGGHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----hCchhhHHHHHHHHHHHHH
Confidence 344567777777777666665 45444 333445566777777777766666653 2344322221111111111
Q ss_pred ChHHHHHHHHh--CC-CCCChhHHH-HHHHHH--HHcCCHHHHHHHHHHhHccCCCCCc
Q 048321 499 KLKEALDFVQS--MP-IKSDAGIWG-TLLCAC--KIHLNIEIGEYVAYCLFKLEPHSAA 551 (641)
Q Consensus 499 ~~~~A~~~~~~--~~-~~p~~~~~~-~ll~~~--~~~g~~~~a~~~~~~~~~~~p~~~~ 551 (641)
...+ ++|.. .| ..-.+..|. .|+.+. ...|+.+.|..+-.++++.-|..+.
T Consensus 79 ~~R~--~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 79 QARK--DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp HHHH--HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred HHHH--HHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 1111 12222 11 111222243 333333 3457777777777777777665443
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=83.12 E-value=35 Score=33.08 Aligned_cols=163 Identities=15% Similarity=0.006 Sum_probs=78.5
Q ss_pred HHHHHHHHHhcCcCchHHHHHHHHHHHHc-CCCC---chhHHHHHHHHHHhcC-CHHHHHHHHhhCCC---CChhHH---
Q 048321 346 VTVLSMISGCGQSGALELGKWFDNYACSG-GLKD---NVMVCNALIDMYSKCG-SIGDARELFYALPE---KIVVSW--- 414 (641)
Q Consensus 346 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~---~~~~~~--- 414 (641)
.....+...|.+.|+.++...++...... +.-+ .......+++.+.... ..+.-.++..+..+ .+-.+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666665554321 1111 2234445566655532 22222333322221 111122
Q ss_pred ---HHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh-----hHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhH
Q 048321 415 ---TTMIAGCALNGEFVEALDLFHQLMELDLRPNRV-----TFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDH 486 (641)
Q Consensus 415 ---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-----t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~ 486 (641)
.-++..|...|++.+|++++.++.+.=-+.|.. .+..-+..|...+++.++...+........ .+.+++..
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~-ai~~~p~i 178 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTAN-AIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HSCCCHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhc-cCCCCHHH
Confidence 245666777777777777777776532122222 233344456666777777777776653322 01122221
Q ss_pred ----HHHHHHHhh-ccCChHHHHHHHHh
Q 048321 487 ----YSCMADLLG-RKGKLKEALDFVQS 509 (641)
Q Consensus 487 ----~~~l~~~~~-~~g~~~~A~~~~~~ 509 (641)
..+-+-.+. ..++|.+|...|-+
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~e 206 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYE 206 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHH
Confidence 122223344 56677776666644
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=82.62 E-value=19 Score=34.97 Aligned_cols=28 Identities=11% Similarity=0.073 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 048321 381 MVCNALIDMYSKCGSIGDARELFYALPE 408 (641)
Q Consensus 381 ~~~~~li~~~~~~g~~~~A~~~~~~~~~ 408 (641)
.....|...|.+.|+.++..+++.....
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 47 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRP 47 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3456677888888888888888777654
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=80.62 E-value=12 Score=36.54 Aligned_cols=73 Identities=10% Similarity=-0.030 Sum_probs=50.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHh----hhCCCCCCChhHHHH
Q 048321 414 WTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYD----DKGISYNPELDHYSC 489 (641)
Q Consensus 414 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~~~p~~~~~~~ 489 (641)
...++..+...|++.+|+..++.+.... +-+...+..++.++...|+..+|.+.|+...+ +.| +.|...+-..
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG--~~P~~~l~~l 250 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLG--IDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHS--CCCCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC--CCCCHHHHHH
Confidence 3445666777788888888887777652 33555778888888888888888888777553 457 7777655443
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=80.43 E-value=13 Score=27.66 Aligned_cols=63 Identities=3% Similarity=-0.117 Sum_probs=43.2
Q ss_pred ChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHHcCCCChhHHHHHHH
Q 048321 121 FLENVLRLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWIS 184 (641)
Q Consensus 121 ~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 184 (641)
+.-+..+-++.+....+.|++....+.+++|.+.+++..|.++++-+...- .+...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 344555666666666788888888888888888888888888888776542 233445665553
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 641 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.92 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.91 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.61 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.57 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.16 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.1 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.09 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.08 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.06 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.06 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.05 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.02 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.98 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.85 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.85 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.76 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.75 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.68 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.61 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.6 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.58 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.53 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.53 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.53 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.52 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.49 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.45 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.39 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.38 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.37 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.32 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.31 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.26 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.2 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.19 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.09 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.08 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.06 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.95 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.94 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.87 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.85 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.79 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.74 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.73 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.68 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.66 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.62 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.55 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.52 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.3 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.25 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.22 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.09 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.26 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 95.73 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 94.75 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 94.58 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 93.95 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 93.69 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 93.6 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 90.05 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 88.99 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=2.9e-22 Score=200.23 Aligned_cols=372 Identities=12% Similarity=0.046 Sum_probs=261.7
Q ss_pred HHHhccCChhHHHHHHHHHHHHcCCCChhHHHHHHHHhHcCCChhHHHHHHhcccCC-CCCchhHHHHHHHHhcCCCchH
Q 048321 149 QAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISSYAKCDDLKMAELVFCGIEER-LRTVVSWNSMVAGCTYGDKFDD 227 (641)
Q Consensus 149 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~ 227 (641)
..+.+.|++++|.++++.+++.. +-++..+..+..+|.+.|++++|...|++..+. |.+..+|..+...|.+.|++++
T Consensus 7 ~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~ 85 (388)
T d1w3ba_ 7 HREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccccc
Confidence 34455666666666666666543 224555666666666666666666666665543 3345566666666666666666
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcC--
Q 048321 228 SLNFYRHMMYNGFRLDVTTVVSLLSSFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGI-- 305 (641)
Q Consensus 228 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-- 305 (641)
|++.+........ .+..............+....+.......
T Consensus 86 A~~~~~~~~~~~~------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (388)
T d1w3ba_ 86 AIEHYRHALRLKP------------------------------------DFIDGYINLAAALVAAGDMEGAVQAYVSALQ 129 (388)
T ss_dssp HHHHHHHHHHHCT------------------------------------TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHH
T ss_pred ccccccccccccc------------------------------------ccccccccccccccccccccccccccccccc
Confidence 6666666555321 11222222222222222222222222211
Q ss_pred -CCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHH
Q 048321 306 -CDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCN 384 (641)
Q Consensus 306 -~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 384 (641)
..................+....+...+....... +-+...+..+...+...|+.+.|...+...++.. +.+..++.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 207 (388)
T d1w3ba_ 130 YNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYI 207 (388)
T ss_dssp HCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred cccccccccccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHH
Confidence 22333344445555566666677776666665542 2234556666667777788888888887777654 44567788
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHhccC
Q 048321 385 ALIDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNR-VTFLAVLQACTHTG 460 (641)
Q Consensus 385 ~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g 460 (641)
.+...+...|++++|...|+.... .+...|..+...+.+.|++++|+..|++..+. .|+. .++..+...+...|
T Consensus 208 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~ 285 (388)
T d1w3ba_ 208 NLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKG 285 (388)
T ss_dssp HHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHS
T ss_pred HHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC
Confidence 888888899999999888887654 45677888889999999999999999999885 5654 57888888999999
Q ss_pred ChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCC-ChhHHHHHHHHHHHcCCHHHHHHH
Q 048321 461 FLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHLNIEIGEYV 538 (641)
Q Consensus 461 ~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~ 538 (641)
++++|.+.++......+ .+...+..++..+.+.|++++|++.|++.. ..| ++.+|..+...+...|++++|+..
T Consensus 286 ~~~~A~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 361 (388)
T d1w3ba_ 286 SVAEAEDCYNTALRLCP----THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH 361 (388)
T ss_dssp CHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred CHHHHHHHHHhhhccCC----ccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999886543 667888999999999999999999999965 555 566889999999999999999999
Q ss_pred HHHhHccCCCCCccHHHHHHHHHhcCC
Q 048321 539 AYCLFKLEPHSAAPYVEMANKYALGGR 565 (641)
Q Consensus 539 ~~~~~~~~p~~~~~~~~l~~~~~~~g~ 565 (641)
++++++++|+++.+|..++.+|.+.|+
T Consensus 362 ~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 362 YKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999885
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=1.7e-21 Score=194.54 Aligned_cols=372 Identities=13% Similarity=0.046 Sum_probs=283.1
Q ss_pred HHHhcCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 048321 217 AGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVVSLLSSFVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDID 296 (641)
Q Consensus 217 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 296 (641)
..+.+.|++++|.+.|+++.+.. +-+...+..+...+...|++++|...++.+++.. +.+..++..+..+|.+.|+++
T Consensus 7 ~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~ 84 (388)
T d1w3ba_ 7 HREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcccc
Confidence 33445556666666665555432 1123444555555556666666666666666554 445678888999999999999
Q ss_pred HHHHHHhcCC---CCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHH
Q 048321 297 SARVLFDGIC---DRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACS 373 (641)
Q Consensus 297 ~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 373 (641)
+|...+.... ..+...+..........+....+............... .............+....+...+.....
T Consensus 85 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (388)
T d1w3ba_ 85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLY-CVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCT-HHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccchhhhhHHHHHHhhc
Confidence 9999998773 33444455555556666666777666666655543333 3334444555666777777777777766
Q ss_pred cCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHH
Q 048321 374 GGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFL 450 (641)
Q Consensus 374 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 450 (641)
.. +.+...+..+...+...|++++|...++...+ .+..+|..+...+...|++++|+..+++....+ ..+...+.
T Consensus 164 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 241 (388)
T d1w3ba_ 164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHG 241 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHH
T ss_pred cC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHH
Confidence 54 45677888889999999999999999987654 456789999999999999999999999998863 34455777
Q ss_pred HHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHH
Q 048321 451 AVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKI 528 (641)
Q Consensus 451 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~ 528 (641)
.+...+...|++++|...|+.+.+..+ -+...+..++.++...|++++|++.++... .+.+...+..+...+..
T Consensus 242 ~l~~~~~~~~~~~~A~~~~~~al~~~p----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 317 (388)
T d1w3ba_ 242 NLACVYYEQGLIDLAIDTYRRAIELQP----HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCS----SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHH
Confidence 788899999999999999999986322 347788999999999999999999999876 55677788999999999
Q ss_pred cCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCceeEEEECCEEEEEeeCCCCCCC
Q 048321 529 HLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRNQVKKFPGQSLFHINGKTCTFTAEDRYHAE 608 (641)
Q Consensus 529 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 608 (641)
.|++++|+..++++++++|+++..+..++.+|...|++++|.+.+++..+. +|.
T Consensus 318 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l--------------------------~P~ 371 (388)
T d1w3ba_ 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--------------------------SPT 371 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--------------------------CTT
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------------------CCC
Confidence 999999999999999999999999999999999999999999999988753 567
Q ss_pred hhcHHHHHHHHHHHH
Q 048321 609 SELTYPVLDCLALHS 623 (641)
Q Consensus 609 ~~~~~~~l~~l~~~~ 623 (641)
..+.+..|..+..+|
T Consensus 372 ~~~a~~~lg~~~~~~ 386 (388)
T d1w3ba_ 372 FADAYSNMGNTLKEM 386 (388)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHc
Confidence 777887777776655
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=1.2e-14 Score=140.62 Aligned_cols=227 Identities=13% Similarity=0.017 Sum_probs=157.8
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 048321 315 AMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCG 394 (641)
Q Consensus 315 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 394 (641)
.....+.+.|++++|+..|++.++.. +-+..++..+..++...|+++.|...+..+++.. +.+...+..+...|...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence 34556677777777777777776652 1234455555566666666666666666665543 234445555555555555
Q ss_pred CHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh----------------hHHHHHHHHhc
Q 048321 395 SIGDARELFYALPEKIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRV----------------TFLAVLQACTH 458 (641)
Q Consensus 395 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----------------t~~~ll~~~~~ 458 (641)
++++|.+.++. +... .|+.. .....+..+..
T Consensus 102 ~~~~A~~~~~~-------------------------------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (323)
T d1fcha_ 102 LQRQACEILRD-------------------------------WLRY--TPAYAHLVTPAEEGAGGAGLGPSKRILGSLLS 148 (323)
T ss_dssp CHHHHHHHHHH-------------------------------HHHT--STTTGGGCC---------------CTTHHHHH
T ss_pred cccccccchhh-------------------------------HHHh--ccchHHHHHhhhhhhhhcccccchhhHHHHHH
Confidence 55555555544 3332 11110 01111222334
Q ss_pred cCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCC-ChhHHHHHHHHHHHcCCHHHHH
Q 048321 459 TGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHLNIEIGE 536 (641)
Q Consensus 459 ~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~ 536 (641)
.+.+.++...|..+.+..+ -.++...+..++..+.+.|++++|+..+++.. ..| +..+|..+...+...|++++|+
T Consensus 149 ~~~~~~a~~~~~~al~~~p--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 226 (323)
T d1fcha_ 149 DSLFLEVKELFLAAVRLDP--TSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAV 226 (323)
T ss_dssp HHHHHHHHHHHHHHHHHST--TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhh--cccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHH
Confidence 4567788888888876554 44567788889999999999999999999865 334 5778999999999999999999
Q ss_pred HHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048321 537 YVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 537 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
..++++++++|+++.+|..+|.+|...|++++|.+.+++..+
T Consensus 227 ~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 227 AAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988765
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=1.8e-13 Score=132.11 Aligned_cols=266 Identities=9% Similarity=-0.005 Sum_probs=194.7
Q ss_pred HHHHHHHhcCCHHHHHHHHhcC---CCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCc
Q 048321 284 TLISMYSKCGDIDSARVLFDGI---CDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGA 360 (641)
Q Consensus 284 ~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~ 360 (641)
.....+.+.|++++|+..|+++ .+.+..+|..+...|...|++++|...|.+..+.. +-+...+..+...+...|+
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccccc
Confidence 4667788999999999999987 33456789999999999999999999999988763 2345677778888999999
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 048321 361 LELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKIVVSWTTMIAGCALNGEFVEALDLFHQLMEL 440 (641)
Q Consensus 361 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 440 (641)
+++|...+..+...... ............. ..+.......+..+...+.+.+|.+.|.+..+.
T Consensus 103 ~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~ 165 (323)
T d1fcha_ 103 QRQACEILRDWLRYTPA-YAHLVTPAEEGAG----------------GAGLGPSKRILGSLLSDSLFLEVKELFLAAVRL 165 (323)
T ss_dssp HHHHHHHHHHHHHTSTT-TGGGCC-------------------------------CTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhHHHhccc-hHHHHHhhhhhhh----------------hcccccchhhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 99999999998875421 1111100000000 001111111223344556778899999988875
Q ss_pred CC-CCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCC-Chh
Q 048321 441 DL-RPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAG 517 (641)
Q Consensus 441 g~-~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~ 517 (641)
.. .++...+..+...+...|++++|...|+......+ -+...|..++.+|.+.|++++|++.|++.. ..| +..
T Consensus 166 ~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 241 (323)
T d1fcha_ 166 DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP----NDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIR 241 (323)
T ss_dssp STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred hhcccccccchhhHHHHHHHHHHhhhhccccccccccc----ccccchhhhhhcccccccchhHHHHHHHHHHHhhccHH
Confidence 21 22345677777889999999999999999986433 457788999999999999999999999876 444 567
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCcc-----------HHHHHHHHHhcCCchHHHH
Q 048321 518 IWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAP-----------YVEMANKYALGGRWDGVAN 571 (641)
Q Consensus 518 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----------~~~l~~~~~~~g~~~eA~~ 571 (641)
+|..+..+|...|++++|+..++++++++|++... |..+..++...|+++.+..
T Consensus 242 a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~ 306 (323)
T d1fcha_ 242 SRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 306 (323)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 89999999999999999999999999999987553 3456667777777765544
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.16 E-value=4e-09 Score=102.14 Aligned_cols=228 Identities=11% Similarity=-0.068 Sum_probs=147.4
Q ss_pred HHHHhcCcCchHHHHHHHHHHHHcC--CC---CchhHHHHHHHHHHhcCCHHHHHHHHhhCCC-------C----ChhHH
Q 048321 351 MISGCGQSGALELGKWFDNYACSGG--LK---DNVMVCNALIDMYSKCGSIGDARELFYALPE-------K----IVVSW 414 (641)
Q Consensus 351 ll~~~~~~~~~~~a~~~~~~~~~~~--~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~ 414 (641)
+...+...|++++|...++...+.. .. .....+..+...+...|++..|...+..... + ....+
T Consensus 57 lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~ 136 (366)
T d1hz4a_ 57 LGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLV 136 (366)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHH
Confidence 3334444455555555444443311 00 0122344455566667777766666654321 1 11345
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCC----hhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCC---ChhHH
Q 048321 415 TTMIAGCALNGEFVEALDLFHQLMELDLRPN----RVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNP---ELDHY 487 (641)
Q Consensus 415 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p---~~~~~ 487 (641)
..+...+...|+++.+...+..........+ ..++......+...+...++...+............. ....+
T Consensus 137 ~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~ 216 (366)
T d1hz4a_ 137 RIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNAN 216 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHH
T ss_pred HHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHH
Confidence 5667778888999999998888876432211 2244455556777888888888887766443311111 12345
Q ss_pred HHHHHHhhccCChHHHHHHHHhCC-CCC-----ChhHHHHHHHHHHHcCCHHHHHHHHHHhHc------cCCCCCccHHH
Q 048321 488 SCMADLLGRKGKLKEALDFVQSMP-IKS-----DAGIWGTLLCACKIHLNIEIGEYVAYCLFK------LEPHSAAPYVE 555 (641)
Q Consensus 488 ~~l~~~~~~~g~~~~A~~~~~~~~-~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~------~~p~~~~~~~~ 555 (641)
..+...+...|++++|...+.... ..| ....+..+...+...|++++|...+++++. ..|.....+..
T Consensus 217 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 296 (366)
T d1hz4a_ 217 KVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLL 296 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHH
Confidence 666778889999999999998865 211 133556677889999999999999998873 44555678899
Q ss_pred HHHHHHhcCCchHHHHHHHHHHh
Q 048321 556 MANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 556 l~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
++.+|.+.|++++|.+.+++..+
T Consensus 297 la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 297 LNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999987654
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.10 E-value=7.3e-10 Score=105.19 Aligned_cols=224 Identities=9% Similarity=0.030 Sum_probs=158.2
Q ss_pred HHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC-CHHHHHHHHhhCCC---CChhHHHHHHHHHH
Q 048321 347 TVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCG-SIGDARELFYALPE---KIVVSWTTMIAGCA 422 (641)
Q Consensus 347 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 422 (641)
.++.+-..+.+.+..++|..+++.+++.+ +-+..+|+....++...| ++++|...++...+ .+..+|+.+...+.
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~ 123 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE 123 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH
Confidence 45555555667778888888888888876 556777788887777766 48888888887654 46678888888888
Q ss_pred HcCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCC--
Q 048321 423 LNGEFVEALDLFHQLMELDLRPN-RVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGK-- 499 (641)
Q Consensus 423 ~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-- 499 (641)
..|++++|++.++++.+. .|+ ...|..+...+.+.|++++|.+.|+.+++..+ .+...|+.+..++.+.|.
T Consensus 124 ~l~~~~eAl~~~~kal~~--dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p----~n~~a~~~r~~~l~~~~~~~ 197 (315)
T d2h6fa1 124 WLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV----RNNSVWNQRYFVISNTTGYN 197 (315)
T ss_dssp HHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCSC
T ss_pred hhccHHHHHHHHhhhhhh--hhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCC----ccHHHHHHHHHHHHHccccc
Confidence 888888888888888875 454 45778888888888888888888888886332 346667766666665554
Q ss_pred ----hHHHHHHHHhCC-CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCcc--HHHHHHHHHhc--CCchHH
Q 048321 500 ----LKEALDFVQSMP-IKS-DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAP--YVEMANKYALG--GRWDGV 569 (641)
Q Consensus 500 ----~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~--~~~l~~~~~~~--g~~~eA 569 (641)
+++|++.+.++. ..| +...|..+...+.. ...+++...++++.++.|+.... +..++++|... +..+.+
T Consensus 198 ~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~ 276 (315)
T d2h6fa1 198 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNK 276 (315)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred hhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHH
Confidence 567777777654 334 56677777665544 34577778888888877764443 44566666543 566677
Q ss_pred HHHHHHHHh
Q 048321 570 ANIRTMMKR 578 (641)
Q Consensus 570 ~~~~~~m~~ 578 (641)
...+++..+
T Consensus 277 ~~~~~ka~~ 285 (315)
T d2h6fa1 277 EDILNKALE 285 (315)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 776666554
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.09 E-value=7.7e-09 Score=97.91 Aligned_cols=186 Identities=11% Similarity=0.024 Sum_probs=148.3
Q ss_pred chHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-C-hhHHHHHHHHHHHcCChHHHHHHHH
Q 048321 360 ALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE--K-I-VVSWTTMIAGCALNGEFVEALDLFH 435 (641)
Q Consensus 360 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~-~~~~~~li~~~~~~g~~~~A~~~~~ 435 (641)
..+.+..++++.++...+.+...+..++..+.+.|+++.|..+|+.+.. + + ...|...+..+.+.|+.+.|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 4578888999888765566777888889999999999999999998754 2 3 3478999999999999999999999
Q ss_pred HHHHcCCCCChhhHHHHHH-HHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC---
Q 048321 436 QLMELDLRPNRVTFLAVLQ-ACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP--- 511 (641)
Q Consensus 436 ~m~~~g~~p~~~t~~~ll~-~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--- 511 (641)
++.+.+ +.+...|..... -+...|+.+.|..+|+.+.+..+ .+...|..+++.+.+.|++++|..+|++..
T Consensus 159 ~al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p----~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~ 233 (308)
T d2onda1 159 KAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG----DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 233 (308)
T ss_dssp HHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS
T ss_pred HHHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Confidence 998763 223334443333 23456889999999999997655 567889999999999999999999999853
Q ss_pred -CCCC--hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCC
Q 048321 512 -IKSD--AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSA 550 (641)
Q Consensus 512 -~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 550 (641)
..|+ ...|...+..-..+|+.+.+..+.+++.++.|+..
T Consensus 234 ~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~ 275 (308)
T d2onda1 234 SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcccc
Confidence 2332 34788888888999999999999999999888753
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.08 E-value=2.4e-09 Score=101.59 Aligned_cols=189 Identities=9% Similarity=-0.016 Sum_probs=141.8
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHhcCcC-chHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 048321 312 SWTAMISGYAQKGDLDEALRLFFAMEAAGELPDL-VTVLSMISGCGQSG-ALELGKWFDNYACSGGLKDNVMVCNALIDM 389 (641)
Q Consensus 312 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 389 (641)
.++.+...+.+.+.+++|+++++++++. .|+. ..|.....++...| ++++|...++.+++.. +-+..+|..+...
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~l--nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHH
Confidence 5677777888889999999999999886 4554 45566666666665 5899999999988876 5678888888889
Q ss_pred HHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHhccC-----
Q 048321 390 YSKCGSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNR-VTFLAVLQACTHTG----- 460 (641)
Q Consensus 390 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g----- 460 (641)
+.+.|++++|...|+.+.+ .+...|..+...+...|++++|++.|+++++. .|+. ..|+.+...+.+.+
T Consensus 122 ~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~--~p~n~~a~~~r~~~l~~~~~~~~~ 199 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDR 199 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--CCccHHHHHHHHHHHHHccccchh
Confidence 9999999999999988765 46788999999999999999999999999986 5544 46665555544444
Q ss_pred -ChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhC
Q 048321 461 -FLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSM 510 (641)
Q Consensus 461 -~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 510 (641)
.+++|...+..+.+..+ .+...|..+..++...| .+++.+.++..
T Consensus 200 ~~~~~ai~~~~~al~~~P----~~~~~~~~l~~ll~~~~-~~~~~~~~~~~ 245 (315)
T d2h6fa1 200 AVLEREVQYTLEMIKLVP----HNESAWNYLKGILQDRG-LSKYPNLLNQL 245 (315)
T ss_dssp HHHHHHHHHHHHHHHHST----TCHHHHHHHHHHHTTTC-GGGCHHHHHHH
T ss_pred hhhHHhHHHHHHHHHhCC----CchHHHHHHHHHHHhcC-hHHHHHHHHHH
Confidence 36788888888886433 35666777766665544 46666666554
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.06 E-value=6.9e-09 Score=100.36 Aligned_cols=286 Identities=12% Similarity=-0.031 Sum_probs=166.2
Q ss_pred HHHHhcCCHHHHHHHHhcC--CCC-C-----cchHHHHHHHHHhCCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHH
Q 048321 287 SMYSKCGDIDSARVLFDGI--CDR-T-----RVSWTAMISGYAQKGDLDEALRLFFAMEAAGE-LPD----LVTVLSMIS 353 (641)
Q Consensus 287 ~~~~~~g~~~~A~~~~~~~--~~~-~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~t~~~ll~ 353 (641)
..+...|++++|+++|++. ..| + ..+++.+...|...|++++|+..|++..+... .++ ..++..+..
T Consensus 20 ~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 99 (366)
T d1hz4a_ 20 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 99 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 3444555555555555443 111 1 12344455555566666666666655543110 011 122333444
Q ss_pred HhcCcCchHHHHHHHHHHHH----cCCCC---chhHHHHHHHHHHhcCCHHHHHHHHhhCCC--------CChhHHHHHH
Q 048321 354 GCGQSGALELGKWFDNYACS----GGLKD---NVMVCNALIDMYSKCGSIGDARELFYALPE--------KIVVSWTTMI 418 (641)
Q Consensus 354 ~~~~~~~~~~a~~~~~~~~~----~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li 418 (641)
.+...|++..+...+..... .+... ....+..+...+...|+++.|...+..... ....++..+.
T Consensus 100 ~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (366)
T d1hz4a_ 100 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 179 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence 45556666666665555443 11111 123445566677778888888777765432 1234555566
Q ss_pred HHHHHcCChHHHHHHHHHHHHcC--CCCCh----hhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHH
Q 048321 419 AGCALNGEFVEALDLFHQLMELD--LRPNR----VTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMAD 492 (641)
Q Consensus 419 ~~~~~~g~~~~A~~~~~~m~~~g--~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~ 492 (641)
..+...++...+...+.+..... ..... ..+......+...|++++|...+.......+.........+..+..
T Consensus 180 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~ 259 (366)
T d1hz4a_ 180 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 259 (366)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 66777888888888877765421 11111 1344455567788889999888887764332101112344566788
Q ss_pred HhhccCChHHHHHHHHhCC-------CCCC-hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCC---------CccHHH
Q 048321 493 LLGRKGKLKEALDFVQSMP-------IKSD-AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHS---------AAPYVE 555 (641)
Q Consensus 493 ~~~~~g~~~~A~~~~~~~~-------~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---------~~~~~~ 555 (641)
++...|++++|...++... ..|+ ..++..+...+...|++++|.+.+++++++.+.. ...+..
T Consensus 260 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~ 339 (366)
T d1hz4a_ 260 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQ 339 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHH
Confidence 8889999999988887753 2332 3467777888899999999999999988765431 112334
Q ss_pred HHHHHHhcCCchHHHHH
Q 048321 556 MANKYALGGRWDGVANI 572 (641)
Q Consensus 556 l~~~~~~~g~~~eA~~~ 572 (641)
+...+...|+.+|+.+-
T Consensus 340 ~~~~l~~~~~l~e~e~~ 356 (366)
T d1hz4a_ 340 QLRQLIQLNTLPELEQH 356 (366)
T ss_dssp HHHHHHHTTCSCHHHHH
T ss_pred HHHHHHhcCCChHHHHH
Confidence 45556677888887653
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.06 E-value=1.1e-09 Score=101.11 Aligned_cols=221 Identities=13% Similarity=-0.069 Sum_probs=137.4
Q ss_pred ChhHHHHHHHHHHHcCCCCC---HHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 048321 325 DLDEALRLFFAMEAAGELPD---LVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARE 401 (641)
Q Consensus 325 ~~~~A~~~~~~m~~~~~~p~---~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 401 (641)
+.+.++.-+.+........+ ..++..+...+.+.|++++|...|+..++.. +.++.+++.+..+|.+.|++++|.+
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~ 92 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYE 92 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhh
Confidence 34555555666554322111 1345555666777888888888888887765 5567788888888888888888888
Q ss_pred HHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHhccCChHHHHHHHHHHHhhhC
Q 048321 402 LFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNR-VTFLAVLQACTHTGFLEKGWAISIIQYDDKG 477 (641)
Q Consensus 402 ~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 477 (641)
.|+++.+ .+..+|..+...|...|++++|+..|++..+. .|+. .....+..++.+.+..+....+......
T Consensus 93 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 167 (259)
T d1xnfa_ 93 AFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK--- 167 (259)
T ss_dssp HHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH---
T ss_pred hhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh--ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc---
Confidence 8887765 34567888888888899999999999988876 4443 3333333344555555555555454442
Q ss_pred CCCCCChhHHHHHHHHhhcc---CChHHHHHHHHhCC-CCCC-hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCcc
Q 048321 478 ISYNPELDHYSCMADLLGRK---GKLKEALDFVQSMP-IKSD-AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAP 552 (641)
Q Consensus 478 ~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 552 (641)
..+....++.....+... +..+.+...+.... ..|+ ..+|..+...+...|++++|...+++++..+|++...
T Consensus 168 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 245 (259)
T d1xnfa_ 168 --SDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE 245 (259)
T ss_dssp --SCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH
T ss_pred --cchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHH
Confidence 223333333222222221 12222222222111 2232 3367778888889999999999999999999986543
Q ss_pred H
Q 048321 553 Y 553 (641)
Q Consensus 553 ~ 553 (641)
|
T Consensus 246 ~ 246 (259)
T d1xnfa_ 246 H 246 (259)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.05 E-value=2.7e-10 Score=109.73 Aligned_cols=230 Identities=9% Similarity=-0.135 Sum_probs=165.5
Q ss_pred hCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcC--cCchHHHHHHHHHHHHcCCCCchhHH-HHHHHHHHhcCCHHH
Q 048321 322 QKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQ--SGALELGKWFDNYACSGGLKDNVMVC-NALIDMYSKCGSIGD 398 (641)
Q Consensus 322 ~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~ 398 (641)
..|++++|+..++...+.. +-+...+..+..++.. .++.+++...+..+.+.. +++...+ ......+...+..++
T Consensus 85 ~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~ 162 (334)
T d1dcea1 85 SAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAE 162 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHH
Confidence 3445678888888887753 2234444444444433 445788888888888765 3344444 345567778899999
Q ss_pred HHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhh
Q 048321 399 ARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDD 475 (641)
Q Consensus 399 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 475 (641)
|...++.... .+..+|+.+...+...|++++|...+++.... .|+.. .+...+...+..+++...+......
T Consensus 163 Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~---~~~~~~~~l~~~~~a~~~~~~~l~~ 237 (334)
T d1dcea1 163 ELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLKEL---ELVQNAFFTDPNDQSAWFYHRWLLG 237 (334)
T ss_dssp HHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHHHH---HHHHHHHHHCSSCSHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHHHH---HHHHHHHHhcchhHHHHHHHHHHHh
Confidence 9999998876 36678999999999999998887766655543 23222 2233345556667777777777653
Q ss_pred hCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccH
Q 048321 476 KGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPY 553 (641)
Q Consensus 476 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 553 (641)
.+ ++...+..++..+...|+.++|...+.+.. ..| +..+|..+...+...|+.++|+..++++++++|.+...|
T Consensus 238 ~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~ 313 (334)
T d1dcea1 238 RA----EPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL 313 (334)
T ss_dssp CC----CCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH
T ss_pred Cc----chhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHH
Confidence 33 445566677778888899999999998865 445 455788888899999999999999999999999988888
Q ss_pred HHHHHHHHh
Q 048321 554 VEMANKYAL 562 (641)
Q Consensus 554 ~~l~~~~~~ 562 (641)
..|+..+.-
T Consensus 314 ~~L~~~~~~ 322 (334)
T d1dcea1 314 DDLRSKFLL 322 (334)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhH
Confidence 888877764
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.02 E-value=7.6e-10 Score=102.16 Aligned_cols=214 Identities=14% Similarity=0.004 Sum_probs=149.1
Q ss_pred chHHHHHHHHHHHHcCC-CC--chhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHcCChHHHHHH
Q 048321 360 ALELGKWFDNYACSGGL-KD--NVMVCNALIDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGCALNGEFVEALDL 433 (641)
Q Consensus 360 ~~~~a~~~~~~~~~~~~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 433 (641)
+.+.+..-++++..... .+ ...++..+..+|.+.|++++|...|++... .++.+|+.+..+|...|++++|+..
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~ 93 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhh
Confidence 44555555666665322 11 234677778899999999999999998764 5778999999999999999999999
Q ss_pred HHHHHHcCCCCCh-hhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-
Q 048321 434 FHQLMELDLRPNR-VTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP- 511 (641)
Q Consensus 434 ~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 511 (641)
|+++.+. .|+. .++..+..++...|++++|...|+...+..+ .+......+...+.+.+..+.+..+.....
T Consensus 94 ~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (259)
T d1xnfa_ 94 FDSVLEL--DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP----NDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 167 (259)
T ss_dssp HHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred hhHHHHH--HhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcc----ccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 9999986 5654 4788888899999999999999999986433 334444444455556665555544444433
Q ss_pred CCCChhHHHHHHHHHH----HcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048321 512 IKSDAGIWGTLLCACK----IHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRNQ 580 (641)
Q Consensus 512 ~~p~~~~~~~ll~~~~----~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~~ 580 (641)
..++...+.. +..+. ..+..+.+...+.......|+....|..++.+|...|++++|.+.+++.....
T Consensus 168 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 168 SDKEQWGWNI-VEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 239 (259)
T ss_dssp SCCCSTHHHH-HHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cchhhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 2222222222 22221 12234444444444455567667788999999999999999999999887643
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.98 E-value=1.8e-08 Score=95.31 Aligned_cols=182 Identities=5% Similarity=-0.044 Sum_probs=143.9
Q ss_pred CCHHHHHHHHhhCCC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHH
Q 048321 394 GSIGDARELFYALPE----KIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAIS 469 (641)
Q Consensus 394 g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 469 (641)
+..++|..+|++..+ .+...|...+..+...|+.+.|..+|++++..........|...+..+.+.|.++.|+++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 456788888887543 4567889999999999999999999999997532222346888899999999999999999
Q ss_pred HHHHhhhCCCCCCChhHHHHHHHH-hhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccC
Q 048321 470 IIQYDDKGISYNPELDHYSCMADL-LGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLE 546 (641)
Q Consensus 470 ~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 546 (641)
+.+.+..+ .+...|...+.. +...|+.+.|..+|+.+. .+.+...|..++..+...|+.+.|+.++++++...
T Consensus 158 ~~al~~~~----~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~ 233 (308)
T d2onda1 158 KKAREDAR----TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 233 (308)
T ss_dssp HHHHTSTT----CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS
T ss_pred HHHHHhCC----CcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Confidence 99985433 344455554444 344689999999999977 45567799999999999999999999999999988
Q ss_pred CCCCc----cHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 547 PHSAA----PYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 547 p~~~~----~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
|.++. .|......-...|+.+.+.++.+.+.+.
T Consensus 234 ~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 234 SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 76554 5666677777889999999999887663
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.85 E-value=6e-09 Score=100.04 Aligned_cols=229 Identities=8% Similarity=-0.042 Sum_probs=164.1
Q ss_pred hcCCHHHHHHHHhcC---CCCCcchHHHHHHHHHhCCC--hhHHHHHHHHHHHcCCCCCHHHH-HHHHHHhcCcCchHHH
Q 048321 291 KCGDIDSARVLFDGI---CDRTRVSWTAMISGYAQKGD--LDEALRLFFAMEAAGELPDLVTV-LSMISGCGQSGALELG 364 (641)
Q Consensus 291 ~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~p~~~t~-~~ll~~~~~~~~~~~a 364 (641)
..|.+++|+.+|+.. .+.+...|..+..++...++ +++|+..+.+..+... ++...+ ......+...+..+.|
T Consensus 85 ~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~A 163 (334)
T d1dcea1 85 SAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEE 163 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCc-hhhhhhhhHHHHHHHhccccHHH
Confidence 345567777777766 44566677777777766654 7889999998887632 334443 3444566778889999
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 048321 365 KWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRP 444 (641)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 444 (641)
...++.+++.. +.+...|+.+...+.+.|++++|...+.....-.... ......+...+..+++...+....... ++
T Consensus 164 l~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~ 240 (334)
T d1dcea1 164 LAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKE-LELVQNAFFTDPNDQSAWFYHRWLLGR-AE 240 (334)
T ss_dssp HHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHH-HHHHHHHHHHCSSCSHHHHHHHHHHSC-CC
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHH-HHHHHHHHHhcchhHHHHHHHHHHHhC-cc
Confidence 99998888876 5678888899999999999988876666554422222 223344556678888999999888763 33
Q ss_pred ChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCC-ChhHHHHHHHHhhccCChHHHHHHHHhCC-CCCC-hhHHHH
Q 048321 445 NRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNP-ELDHYSCMADLLGRKGKLKEALDFVQSMP-IKSD-AGIWGT 521 (641)
Q Consensus 445 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~ 521 (641)
+..++..+...+...++.++|...+..... ..| +...+..++.+|.+.|++++|++.++... ..|+ ...|..
T Consensus 241 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~ 315 (334)
T d1dcea1 241 PLFRCELSVEKSTVLQSELESCKELQELEP-----ENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 315 (334)
T ss_dssp CSSSCCCCHHHHHHHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHHh-----hCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHH
Confidence 444666667777888999999999888774 334 46778889999999999999999999977 6664 456676
Q ss_pred HHHHHHH
Q 048321 522 LLCACKI 528 (641)
Q Consensus 522 ll~~~~~ 528 (641)
|...+..
T Consensus 316 L~~~~~~ 322 (334)
T d1dcea1 316 LRSKFLL 322 (334)
T ss_dssp HHHHHHH
T ss_pred HHHHHhH
Confidence 6555543
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.85 E-value=1.2e-08 Score=80.54 Aligned_cols=90 Identities=10% Similarity=0.034 Sum_probs=73.2
Q ss_pred HHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCch
Q 048321 490 MADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWD 567 (641)
Q Consensus 490 l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 567 (641)
-+..+.+.|++++|+..|++.. .+.++..|..+..++...|++++|+..++++++++|+++..|..++.+|...|+++
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHH
Confidence 3566778888888888888865 44466678888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHhC
Q 048321 568 GVANIRTMMKRN 579 (641)
Q Consensus 568 eA~~~~~~m~~~ 579 (641)
+|...+++..+.
T Consensus 89 ~A~~~~~~a~~~ 100 (117)
T d1elwa_ 89 EAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh
Confidence 888888887753
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.76 E-value=1.6e-08 Score=88.87 Aligned_cols=95 Identities=11% Similarity=-0.119 Sum_probs=48.1
Q ss_pred CChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHH
Q 048321 482 PELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANK 559 (641)
Q Consensus 482 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 559 (641)
|+...+...+..|.+.|++++|+..|+++. .+.++..|..+..+|...|+++.|+..++++++++|+++.+|..+|.+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~ 81 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHH
Confidence 344444444455555555555555554433 222344455555555555555555555555555555555555555555
Q ss_pred HHhcCCchHHHHHHHHH
Q 048321 560 YALGGRWDGVANIRTMM 576 (641)
Q Consensus 560 ~~~~g~~~eA~~~~~~m 576 (641)
|...|++++|...+++.
T Consensus 82 ~~~l~~~~~A~~~~~~a 98 (201)
T d2c2la1 82 QLEMESYDEAIANLQRA 98 (201)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHH
Confidence 55555555555555444
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.75 E-value=5.4e-08 Score=76.57 Aligned_cols=105 Identities=11% Similarity=-0.051 Sum_probs=87.4
Q ss_pred HHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcC
Q 048321 453 LQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHL 530 (641)
Q Consensus 453 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g 530 (641)
...+...|++++|...|..+++..+ .+...|..+..+|.+.|++++|+..++... .+.++..|..+..++...|
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~p----~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~ 85 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLDP----HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN 85 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCC----cchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHcc
Confidence 4566778888888888888886433 557778888888889999999998888876 4457778999999999999
Q ss_pred CHHHHHHHHHHhHccCCCCCccHHHHHHHHH
Q 048321 531 NIEIGEYVAYCLFKLEPHSAAPYVEMANKYA 561 (641)
Q Consensus 531 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 561 (641)
++++|+..++++++++|+++..+..+.++-.
T Consensus 86 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~ 116 (117)
T d1elwa_ 86 RFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 116 (117)
T ss_dssp CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence 9999999999999999999888888877654
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.68 E-value=8.1e-08 Score=80.51 Aligned_cols=87 Identities=13% Similarity=0.002 Sum_probs=49.1
Q ss_pred HHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHH
Q 048321 492 DLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGV 569 (641)
Q Consensus 492 ~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA 569 (641)
..|.+.|++++|+..|++.. .+.+...|..+...|...|+++.|+..++++++++|+++.+|..++.+|...|++++|
T Consensus 18 n~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~eA 97 (159)
T d1a17a_ 18 NDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAA 97 (159)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHHHH
Confidence 44555555555555555544 2224445555555555556666666666666666665555566666666666666666
Q ss_pred HHHHHHHHh
Q 048321 570 ANIRTMMKR 578 (641)
Q Consensus 570 ~~~~~~m~~ 578 (641)
.+.+++...
T Consensus 98 ~~~~~~a~~ 106 (159)
T d1a17a_ 98 LRDYETVVK 106 (159)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 655555543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.61 E-value=3.9e-08 Score=76.70 Aligned_cols=88 Identities=10% Similarity=-0.054 Sum_probs=79.6
Q ss_pred HHHHHhhccCChHHHHHHHHhCC-CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCc
Q 048321 489 CMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRW 566 (641)
Q Consensus 489 ~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 566 (641)
.++..+.+.|++++|+..|++.. ..| ++..|..+...+...|++++|+..++++++++|+++..+..++.+|...|++
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCH
Confidence 45677888999999999999976 445 5778999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHH
Q 048321 567 DGVANIRTMM 576 (641)
Q Consensus 567 ~eA~~~~~~m 576 (641)
++|.+.+++.
T Consensus 101 ~~A~~~l~~~ 110 (112)
T d1hxia_ 101 NAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998874
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.60 E-value=9.4e-07 Score=76.25 Aligned_cols=140 Identities=8% Similarity=-0.116 Sum_probs=97.8
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHhccCChHHH
Q 048321 387 IDMYSKCGSIGDARELFYALPEKIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNR-VTFLAVLQACTHTGFLEKG 465 (641)
Q Consensus 387 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a 465 (641)
...+...|+++.|.+.|.++..++..+|..+...|...|++++|++.|++.++. .|+. ..|..+..++.+.|++++|
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l--dp~~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHH--hhhhhhhHHHHHHHHHhhccHHHH
Confidence 345677888888888888888888888888888888888888888888888875 4554 4777777788888888888
Q ss_pred HHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHHhHc
Q 048321 466 WAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMPIKSD-AGIWGTLLCACKIHLNIEIGEYVAYCLFK 544 (641)
Q Consensus 466 ~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 544 (641)
...|+....... ++... .+...|. ..+.+ ..++..+..++...|++++|.+.++++++
T Consensus 90 ~~~~~kAl~~~~----~n~~~------~~~~~~~-----------~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~ 148 (192)
T d1hh8a_ 90 IKDLKEALIQLR----GNQLI------DYKILGL-----------QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 148 (192)
T ss_dssp HHHHHHHHHTTT----TCSEE------ECGGGTB-----------CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCc----cCchH------HHHHhhh-----------hcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 888888774221 11100 0000000 01111 23455667778888888888888888888
Q ss_pred cCCCC
Q 048321 545 LEPHS 549 (641)
Q Consensus 545 ~~p~~ 549 (641)
+.|+.
T Consensus 149 ~~~~~ 153 (192)
T d1hh8a_ 149 MKSEP 153 (192)
T ss_dssp TCCSG
T ss_pred cCCCc
Confidence 88763
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.58 E-value=2.4e-07 Score=77.51 Aligned_cols=116 Identities=7% Similarity=-0.118 Sum_probs=91.4
Q ss_pred HHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCC-ChhHHHHHHHHHHHcC
Q 048321 453 LQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHL 530 (641)
Q Consensus 453 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g 530 (641)
...|.+.|++++|...|+.+.+..+ .+...|..++.+|...|++++|+..|+++. ..| +..+|..+..++...|
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~~p----~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g 92 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIELNP----SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 92 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHST----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHhhhccccch----hhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcC
Confidence 3466788888888888888886433 457778888888888888888888888875 344 5678999999999999
Q ss_pred CHHHHHHHHHHhHccCCCCCccHHHHHHHHH--hcCCchHHHHH
Q 048321 531 NIEIGEYVAYCLFKLEPHSAAPYVEMANKYA--LGGRWDGVANI 572 (641)
Q Consensus 531 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~~~eA~~~ 572 (641)
++++|...++++++++|+++..+..+..+.. ..+.+++|...
T Consensus 93 ~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 93 KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999888887776643 44557666654
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.53 E-value=1.7e-07 Score=82.06 Aligned_cols=103 Identities=7% Similarity=-0.207 Sum_probs=48.6
Q ss_pred ChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCC-ChhHHHHH
Q 048321 445 NRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTL 522 (641)
Q Consensus 445 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l 522 (641)
+...+......+...|++++|+..|..+++..+ .+...|..++.+|.+.|++++|+..|++.. ..| +..+|..+
T Consensus 3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p----~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~l 78 (201)
T d2c2la1 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP----LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 78 (201)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHH
Confidence 333344444444455555555555554443221 224444445555555555555555555443 333 23345555
Q ss_pred HHHHHHcCCHHHHHHHHHHhHccCCCCCc
Q 048321 523 LCACKIHLNIEIGEYVAYCLFKLEPHSAA 551 (641)
Q Consensus 523 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 551 (641)
..++...|++++|+..++++++++|++..
T Consensus 79 g~~~~~l~~~~~A~~~~~~al~l~p~~~~ 107 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRAYSLAKEQRL 107 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcccHH
Confidence 55555555555555555555555554333
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.53 E-value=1.8e-07 Score=73.66 Aligned_cols=108 Identities=13% Similarity=-0.116 Sum_probs=84.5
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCC---hHHHHHHHHhCC-CCCCh---hHHHHH
Q 048321 450 LAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGK---LKEALDFVQSMP-IKSDA---GIWGTL 522 (641)
Q Consensus 450 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~-~~p~~---~~~~~l 522 (641)
..+++.+...+++++|.+.|+......+ .+..++..++.+|.+.++ +++|+.+++++. ..|++ .+|..|
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p----~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~L 78 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGS----VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYL 78 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSC----CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCC----CCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHH
Confidence 4567778888899999999999886443 567888888888887554 456999998865 44433 367888
Q ss_pred HHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHH
Q 048321 523 LCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYA 561 (641)
Q Consensus 523 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 561 (641)
..+|...|++++|++.++++++++|++..+...+..+..
T Consensus 79 g~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~ 117 (122)
T d1nzna_ 79 AVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDK 117 (122)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 999999999999999999999999998776666555443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.53 E-value=6.8e-07 Score=83.21 Aligned_cols=188 Identities=9% Similarity=-0.046 Sum_probs=127.9
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCC---CCC--hhhHHH
Q 048321 386 LIDMYSKCGSIGDARELFYALPE-----KI----VVSWTTMIAGCALNGEFVEALDLFHQLMELDL---RPN--RVTFLA 451 (641)
Q Consensus 386 li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~t~~~ 451 (641)
....|..+|++++|.+.|.+..+ .+ ..+|+.+...|.+.|++++|++.+++..+.-. .+. ..++..
T Consensus 43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 122 (290)
T d1qqea_ 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (290)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence 45678888999998888877643 12 35788899999999999999999998765211 111 235556
Q ss_pred HHHHHh-ccCChHHHHHHHHHHHhhhCCCCCCC----hhHHHHHHHHhhccCChHHHHHHHHhCC-CCCC-h-------h
Q 048321 452 VLQACT-HTGFLEKGWAISIIQYDDKGISYNPE----LDHYSCMADLLGRKGKLKEALDFVQSMP-IKSD-A-------G 517 (641)
Q Consensus 452 ll~~~~-~~g~~~~a~~~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~-------~ 517 (641)
+...|. ..|++++|.+.|+.+.+... ...+ ..++..++..|.+.|++++|++.|+++. ..|+ . .
T Consensus 123 l~~~~~~~~~~~~~A~~~~~~A~~l~~--~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~ 200 (290)
T d1qqea_ 123 LGEILENDLHDYAKAIDCYELAGEWYA--QDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKD 200 (290)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHH
T ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHH--hcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHH
Confidence 666664 46999999999998875322 1111 3457788999999999999999998854 2111 1 1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCcc--H---HHHHHHHHh--cCCchHHHHHHHH
Q 048321 518 IWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAP--Y---VEMANKYAL--GGRWDGVANIRTM 575 (641)
Q Consensus 518 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~--~---~~l~~~~~~--~g~~~eA~~~~~~ 575 (641)
.+...+..+...|+++.|...++++.+++|..+.+ + ..++..|.. .+++++|...++.
T Consensus 201 ~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~ 265 (290)
T d1qqea_ 201 YFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDN 265 (290)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 23444556678899999999999999999864433 2 334445444 3568888887753
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.52 E-value=5.9e-07 Score=77.59 Aligned_cols=117 Identities=8% Similarity=-0.112 Sum_probs=82.3
Q ss_pred HhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHH
Q 048321 456 CTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIE 533 (641)
Q Consensus 456 ~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~ 533 (641)
+...|++++|++.|..+ ..|+...|..++.+|...|++++|++.|++.. .+.++..|..+..++.+.|+++
T Consensus 15 ~~~~~d~~~Al~~~~~i-------~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~ 87 (192)
T d1hh8a_ 15 AADKKDWKGALDAFSAV-------QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYD 87 (192)
T ss_dssp HHHTTCHHHHHHHHHTS-------SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHCCCHHHHHHHHHhc-------CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHH
Confidence 45566666666666543 23555566666777777777777777776655 3335667777777777888888
Q ss_pred HHHHHHHHhHccCCCCC----------------ccHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 534 IGEYVAYCLFKLEPHSA----------------APYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 534 ~a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
+|+..++++++..|.+. ..+..++.+|...|++++|.+.++.....
T Consensus 88 ~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 88 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149 (192)
T ss_dssp HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 88888887776655432 34567899999999999999999887754
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.49 E-value=4.5e-07 Score=76.60 Aligned_cols=61 Identities=3% Similarity=-0.154 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048321 518 IWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 518 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
+|..+..+|.+.|++++|+..++++++++|+++.+|..+|.+|...|++++|...+++..+
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 124 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 124 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4555666667777777777777777777777777777777777777777777777776655
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.45 E-value=6.4e-07 Score=74.11 Aligned_cols=84 Identities=6% Similarity=-0.095 Sum_probs=73.3
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCceeEEEECCEE
Q 048321 517 GIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRNQVKKFPGQSLFHINGKT 596 (641)
Q Consensus 517 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~~~~~~~~~s~~~~~~~~ 596 (641)
.++..+..++.+.|++++|+..++++++++|+++.+|..+|.+|...|++++|...+++..+.
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l----------------- 130 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL----------------- 130 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----------------
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh-----------------
Confidence 356778888999999999999999999999999999999999999999999999999987763
Q ss_pred EEEeeCCCCCCChhcHHHHHHHHHHHHHHc
Q 048321 597 CTFTAEDRYHAESELTYPVLDCLALHSREE 626 (641)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 626 (641)
+|...++...+..+..++++.
T Consensus 131 ---------~P~n~~~~~~l~~~~~kl~~~ 151 (153)
T d2fbna1 131 ---------NPNNLDIRNSYELCVNKLKEA 151 (153)
T ss_dssp ---------STTCHHHHHHHHHHHHHHHHH
T ss_pred ---------CCCCHHHHHHHHHHHHHHHHH
Confidence 577777888888877777653
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.39 E-value=1.2e-06 Score=73.86 Aligned_cols=134 Identities=12% Similarity=-0.022 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHH
Q 048321 413 SWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMAD 492 (641)
Q Consensus 413 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~ 492 (641)
.+......+.+.|++++|+..|++.+.. .|....+ ..... ..... .....|+.+..
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~--~~~~~~~-----------~~~~~-~~~~~----------~~~~~~~nla~ 70 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSF-----------SNEEA-QKAQA----------LRLASHLNLAM 70 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCC-----------CSHHH-HHHHH----------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhcccc-----------chHHH-hhhch----------hHHHHHHHHHH
Confidence 4455566777888888888888887764 1211110 00010 01111 11235677888
Q ss_pred HhhccCChHHHHHHHHhCC-CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHH
Q 048321 493 LLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVA 570 (641)
Q Consensus 493 ~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~ 570 (641)
+|.+.|++++|+..++... ..| ++..|..+..++...|++++|+..++++++++|+|+.....+..++.+.+...+..
T Consensus 71 ~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e 150 (170)
T d1p5qa1 71 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE 150 (170)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999876 445 77799999999999999999999999999999999999999999988777666543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.38 E-value=1.1e-06 Score=70.20 Aligned_cols=92 Identities=7% Similarity=-0.002 Sum_probs=77.3
Q ss_pred HHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCcc-------HHHHH
Q 048321 487 YSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAP-------YVEMA 557 (641)
Q Consensus 487 ~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-------~~~l~ 557 (641)
+-.+++.+.+.|++++|+..|++.. .+.+..+|..+..+|...|+++.|+..++++++++|+++.. |..++
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 4456788889999999999998876 44467789999999999999999999999999999987764 44566
Q ss_pred HHHHhcCCchHHHHHHHHHHh
Q 048321 558 NKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 558 ~~~~~~g~~~eA~~~~~~m~~ 578 (641)
.++...|++++|.+.+++...
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHh
Confidence 778888899999999987654
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.37 E-value=4.1e-07 Score=71.59 Aligned_cols=92 Identities=9% Similarity=-0.127 Sum_probs=77.9
Q ss_pred HHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcC---CHHHHHHHHHHhHccCCCC--CccHHHHHHHH
Q 048321 488 SCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHL---NIEIGEYVAYCLFKLEPHS--AAPYVEMANKY 560 (641)
Q Consensus 488 ~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~ 560 (641)
..+++.+...+++++|.+.|++.. .+.++.++..+..++.+.+ +.++|+.+++++++.+|.+ ..++..+|.+|
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 457788889999999999999977 4557788888988887644 5667999999999998764 34789999999
Q ss_pred HhcCCchHHHHHHHHHHhC
Q 048321 561 ALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 561 ~~~g~~~eA~~~~~~m~~~ 579 (641)
.+.|++++|.+.++++.+.
T Consensus 83 ~~~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQT 101 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHh
Confidence 9999999999999998863
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.32 E-value=3.4e-06 Score=78.36 Aligned_cols=173 Identities=9% Similarity=-0.061 Sum_probs=129.9
Q ss_pred CHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCCCh-hhHHHHHHHHhccCChHHHHHHH
Q 048321 395 SIGDARELFYALPEKIVVSWTTMIAGCALNGEFVEALDLFHQLMEL----DLRPNR-VTFLAVLQACTHTGFLEKGWAIS 469 (641)
Q Consensus 395 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~ 469 (641)
++++|.++| ......|...|++++|++.|.++.+. +-.|+. .+|..+..+|.+.|++++|...+
T Consensus 32 ~~~~Aa~~y-----------~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~ 100 (290)
T d1qqea_ 32 KFEEAADLC-----------VQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (290)
T ss_dssp HHHHHHHHH-----------HHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHH-----------HHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 456666654 44577889999999999999998763 112222 37888888999999999999999
Q ss_pred HHHHhhhCCCCCCC----hhHHHHHHHHhhc-cCChHHHHHHHHhCC----CCCC----hhHHHHHHHHHHHcCCHHHHH
Q 048321 470 IIQYDDKGISYNPE----LDHYSCMADLLGR-KGKLKEALDFVQSMP----IKSD----AGIWGTLLCACKIHLNIEIGE 536 (641)
Q Consensus 470 ~~~~~~~~~~~~p~----~~~~~~l~~~~~~-~g~~~~A~~~~~~~~----~~p~----~~~~~~ll~~~~~~g~~~~a~ 536 (641)
+...+... -..+ ...+..+...|.. .|++++|++.+++.. ...+ ..++..+...+...|++++|+
T Consensus 101 ~~a~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~ 178 (290)
T d1qqea_ 101 ENAIQIFT--HRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEAS 178 (290)
T ss_dssp HHHHHHHH--HTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhhHHhh--hcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHH
Confidence 98775432 1122 3456666677754 699999999998864 1111 335777888999999999999
Q ss_pred HHHHHhHccCCCCCc-------cHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048321 537 YVAYCLFKLEPHSAA-------PYVEMANKYALGGRWDGVANIRTMMKRNQ 580 (641)
Q Consensus 537 ~~~~~~~~~~p~~~~-------~~~~l~~~~~~~g~~~eA~~~~~~m~~~~ 580 (641)
..++++....|.++. .+...+.++...|+++.|.+.+++..+..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~ 229 (290)
T d1qqea_ 179 DIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED 229 (290)
T ss_dssp HHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-
T ss_pred HHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 999999998887653 34567778889999999999999887653
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.31 E-value=1.3e-06 Score=73.68 Aligned_cols=84 Identities=6% Similarity=-0.092 Sum_probs=70.1
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCceeEEEECC
Q 048321 515 DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRNQVKKFPGQSLFHING 594 (641)
Q Consensus 515 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~~~~~~~~~s~~~~~~ 594 (641)
+...|..+..++.+.|++++|+..++++++++|+++.+|..+|.+|...|++++|.+.+++..+.
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l--------------- 140 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--------------- 140 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh---------------
Confidence 34467778888899999999999999999999999999999999999999999999999988763
Q ss_pred EEEEEeeCCCCCCChhcHHHHHHHHHHHHH
Q 048321 595 KTCTFTAEDRYHAESELTYPVLDCLALHSR 624 (641)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 624 (641)
.|....++..+..+..++.
T Consensus 141 -----------~p~n~~~~~~l~~~~~~l~ 159 (169)
T d1ihga1 141 -----------APEDKAIQAELLKVKQKIK 159 (169)
T ss_dssp -----------CTTCHHHHHHHHHHHHHHH
T ss_pred -----------CCCCHHHHHHHHHHHHHHH
Confidence 4556667777766665543
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.26 E-value=5e-06 Score=69.82 Aligned_cols=61 Identities=5% Similarity=-0.099 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048321 518 IWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 518 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
++..+..++.+.|++++|+..++++++++|++..+|..++.+|...|++++|.+.++++..
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~ 126 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 126 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445556667777777777777777777777777777777777777777777777777665
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.20 E-value=1e-05 Score=67.80 Aligned_cols=92 Identities=8% Similarity=-0.084 Sum_probs=77.1
Q ss_pred HHHHHHHHhhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhc
Q 048321 486 HYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALG 563 (641)
Q Consensus 486 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 563 (641)
.|..+..+|.+.|++++|+..++... .+.+..+|..+..++...|++++|+..++++++++|+++.+...+..+....
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~ 145 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKA 145 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 46667888999999999999999976 4557779999999999999999999999999999999999999999998887
Q ss_pred CCchH-HHHHHHHHH
Q 048321 564 GRWDG-VANIRTMMK 577 (641)
Q Consensus 564 g~~~e-A~~~~~~m~ 577 (641)
+...+ ..+++..|-
T Consensus 146 ~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 146 KEHNERDRRTYANMF 160 (168)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHH
Confidence 76554 344544443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.19 E-value=7.5e-05 Score=67.82 Aligned_cols=226 Identities=11% Similarity=-0.069 Sum_probs=130.4
Q ss_pred cchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcC----cCchHHHHHHHHHHHHcCCCCchhHHHH
Q 048321 310 RVSWTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQ----SGALELGKWFDNYACSGGLKDNVMVCNA 385 (641)
Q Consensus 310 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 385 (641)
+..+..|...+.+.+++++|++.|++..+.| +...+..|-..+.. ..+...+...+....+.+
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---------- 68 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---------- 68 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc----------
Confidence 3455566666666777777777777766654 22222223222221 234444444444444433
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCChhhHHHHHHH--Hhcc
Q 048321 386 LIDMYSKCGSIGDARELFYALPEKIVVSWTTMIAGCAL----NGEFVEALDLFHQLMELDLRPNRVTFLAVLQA--CTHT 459 (641)
Q Consensus 386 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~--~~~~ 459 (641)
+...+..+...+.. ..+.+.|...++.....|..+.. ........ ....
T Consensus 69 ------------------------~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~-~~l~~~~~~~~~~~ 123 (265)
T d1ouva_ 69 ------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGC-ASLGGIYHDGKVVT 123 (265)
T ss_dssp ------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHH-HHHHHHHHHCSSSC
T ss_pred ------------------------ccchhhccccccccccccchhhHHHHHHHhhhhhhhhhhHH-HhhcccccCCCccc
Confidence 22222222222222 34556677777776665421111 11111111 1223
Q ss_pred CChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhc----cCChHHHHHHHHhCCCCCChhHHHHHHHHHHH----cCC
Q 048321 460 GFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGR----KGKLKEALDFVQSMPIKSDAGIWGTLLCACKI----HLN 531 (641)
Q Consensus 460 g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~ 531 (641)
.....+...+..... ..+...+..|...|.. ..+...+...++......++.....|...+.. ..+
T Consensus 124 ~~~~~a~~~~~~~~~------~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d 197 (265)
T d1ouva_ 124 RDFKKAVEYFTKACD------LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKN 197 (265)
T ss_dssp CCHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCC
T ss_pred chhHHHHHHhhhhhc------ccccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccc
Confidence 445666666665542 2455566666666654 44566777777665544566666666666654 568
Q ss_pred HHHHHHHHHHhHccCCCCCccHHHHHHHHHh----cCCchHHHHHHHHHHhCCC
Q 048321 532 IEIGEYVAYCLFKLEPHSAAPYVEMANKYAL----GGRWDGVANIRTMMKRNQV 581 (641)
Q Consensus 532 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~eA~~~~~~m~~~~~ 581 (641)
.+.|+..++++.+.+ ++..+..|+.+|.. ..++++|.+.+++..+.|.
T Consensus 198 ~~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 198 FKEALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred hhhhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 999999999998874 57888999999986 4489999999999887663
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.09 E-value=5e-07 Score=91.09 Aligned_cols=94 Identities=11% Similarity=-0.085 Sum_probs=48.7
Q ss_pred hhHHHHHHHHhhccCChHHHHHHHHhCCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHh
Q 048321 484 LDHYSCMADLLGRKGKLKEALDFVQSMPIKSD-AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYAL 562 (641)
Q Consensus 484 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 562 (641)
...+..+...+.+.|+.++|...+.... .++ ..++..+...++..|++++|+..++++++++|++...|..||.+|..
T Consensus 120 ~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~ 198 (497)
T d1ya0a1 120 RVKSSQLGIISNKQTHTSAIVKPQSSSC-SYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASS 198 (497)
T ss_dssp -----------------------CCHHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHhCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 4456666667777777777766554432 111 23566667777777777777777777777777777777777777777
Q ss_pred cCCchHHHHHHHHHHh
Q 048321 563 GGRWDGVANIRTMMKR 578 (641)
Q Consensus 563 ~g~~~eA~~~~~~m~~ 578 (641)
.|++.+|...+.+...
T Consensus 199 ~~~~~~A~~~y~ral~ 214 (497)
T d1ya0a1 199 KGDHLTTIFYYCRSIA 214 (497)
T ss_dssp TTCHHHHHHHHHHHHS
T ss_pred cCCHHHHHHHHHHHHh
Confidence 7777777777766554
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.08 E-value=7.8e-06 Score=68.72 Aligned_cols=133 Identities=7% Similarity=-0.053 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCC-ChhHHHHHH
Q 048321 413 SWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNP-ELDHYSCMA 491 (641)
Q Consensus 413 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p-~~~~~~~l~ 491 (641)
.+......+...|++++|+..|+++++. +..........+ ... +.| ....|..+.
T Consensus 29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~~------------~~~~~~~~~~~~-------~~~-----~~~~~~~~~~nla 84 (169)
T d1ihga1 29 DLKNIGNTFFKSQNWEMAIKKYTKVLRY------------VEGSRAAAEDAD-------GAK-----LQPVALSCVLNIG 84 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH------------HHHHHHHSCHHH-------HGG-----GHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh------------hhhhhhhhhhHH-------HHH-----hChhhHHHHHHHH
Confidence 3455566777888999998888877642 000000011111 000 122 355677888
Q ss_pred HHhhccCChHHHHHHHHhCC-CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHH
Q 048321 492 DLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGV 569 (641)
Q Consensus 492 ~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA 569 (641)
.+|.+.|++++|+..++++. ..| ++..|..+..++...|++++|+..++++++++|+++..+..+..++.......++
T Consensus 85 ~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~~ 164 (169)
T d1ihga1 85 ACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 164 (169)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999975 445 6779999999999999999999999999999999998888888877665554443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.06 E-value=2.1e-05 Score=64.58 Aligned_cols=128 Identities=12% Similarity=-0.022 Sum_probs=92.8
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHH
Q 048321 412 VSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMA 491 (641)
Q Consensus 412 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~ 491 (641)
..+......+.+.|++.+|+..|+++... -|... ... +.... .... .....+|..+.
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~--~~~~~-----------~~~-~~~~~--~~~~-------~~~~~~~~Nla 74 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTE-----------EWD-DQILL--DKKK-------NIEISCNLNLA 74 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCT-----------TCC-CHHHH--HHHH-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--Ccchh-----------hhh-hHHHH--Hhhh-------hHHHHHHhhHH
Confidence 45666777888889999999988888763 12110 000 00000 0000 12234677788
Q ss_pred HHhhccCChHHHHHHHHhCC-CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHh
Q 048321 492 DLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYAL 562 (641)
Q Consensus 492 ~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 562 (641)
.+|.+.|++++|++.++.+. ..| +..+|..+..++...|++++|+..++++++++|+|+.....+..+..+
T Consensus 75 ~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~k 147 (153)
T d2fbna1 75 TCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 147 (153)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 99999999999999999976 444 677999999999999999999999999999999998887777665443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.95 E-value=0.0028 Score=58.43 Aligned_cols=122 Identities=11% Similarity=0.045 Sum_probs=52.8
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 048321 313 WTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSK 392 (641)
Q Consensus 313 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 392 (641)
|..++-.|.+.|+++.|..++- .. .++.......+..+.+..+.+...++.....+. .| ...+.++.....
T Consensus 177 ~~elv~Ly~~~~~~~~A~~~~i---~~--~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~--~p--~~i~~lL~~v~~ 247 (336)
T d1b89a_ 177 WAELVFLYDKYEEYDNAIITMM---NH--PTDAWKEGQFKDIITKVANVELYYRAIQFYLEF--KP--LLLNDLLMVLSP 247 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHH---HS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH--CG--GGHHHHHHHHGG
T ss_pred hHHHHHHHHhcCCHHHHHHHHH---Hc--chhhhhHHHHHHHHHccCChHHHHHHHHHHHHc--CH--HHHHHHHHHhcc
Confidence 4445555556666665555432 11 122212222333344444544444444443332 12 223334444443
Q ss_pred cCCHHHHHHHHhhCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHH
Q 048321 393 CGSIGDARELFYALPEKIVVSWTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEK 464 (641)
Q Consensus 393 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 464 (641)
.-+..+..+.| .+.++.......++.....| +....+++...|...++++.
T Consensus 248 ~~d~~r~V~~~------------------~k~~~l~li~p~Le~v~~~n---~~~vn~al~~lyie~~d~~~ 298 (336)
T d1b89a_ 248 RLDHTRAVNYF------------------SKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQA 298 (336)
T ss_dssp GCCHHHHHHHH------------------HHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHH
T ss_pred CCCHHHHHHHH------------------HhcCCcHHHHHHHHHHHHcC---hHHHHHHHHHHHhCcchhHH
Confidence 33444333333 33444444445554443332 23455555556666665544
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.94 E-value=2.1e-05 Score=60.56 Aligned_cols=87 Identities=9% Similarity=-0.063 Sum_probs=43.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhh
Q 048321 417 MIAGCALNGEFVEALDLFHQLMELDLRPNR-VTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLG 495 (641)
Q Consensus 417 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 495 (641)
+...+.+.|++++|+..|++.... .|+. .+|..+..++.+.|++++|...|+.+.+..+ .+...|..++.+|.
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p----~~~~a~~~la~~y~ 95 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP----KDIAVHAALAVSHT 95 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhccc--ccccchhhhhhhhhhhhhhhHHHhhccccccccccc----ccccchHHHHHHHH
Confidence 344445555555555555555553 3432 3444444555555555555555555553211 22444555555555
Q ss_pred ccCChHHHHHHHHh
Q 048321 496 RKGKLKEALDFVQS 509 (641)
Q Consensus 496 ~~g~~~~A~~~~~~ 509 (641)
..|++++|++.+++
T Consensus 96 ~~g~~~~A~~~l~~ 109 (112)
T d1hxia_ 96 NEHNANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHH
Confidence 55555555555443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.87 E-value=8e-06 Score=66.41 Aligned_cols=84 Identities=10% Similarity=-0.101 Sum_probs=58.0
Q ss_pred ccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHH----------cCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhc
Q 048321 496 RKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKI----------HLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALG 563 (641)
Q Consensus 496 ~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~----------~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 563 (641)
|.+.+++|++.|+... .+.++.++..+..++.. .+.+++|+..++++++++|+++.+|..+|.+|...
T Consensus 9 r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~ 88 (145)
T d1zu2a1 9 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 88 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHc
Confidence 3444555555555543 22234444444444432 34568899999999999999999999999999887
Q ss_pred CC-----------chHHHHHHHHHHhC
Q 048321 564 GR-----------WDGVANIRTMMKRN 579 (641)
Q Consensus 564 g~-----------~~eA~~~~~~m~~~ 579 (641)
|+ +++|.+.+++..+.
T Consensus 89 g~~~~~~~~~~~~~~~A~~~~~kal~l 115 (145)
T d1zu2a1 89 AFLTPDETEAKHNFDLATQFFQQAVDE 115 (145)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHhHHHhhhhhhccccc
Confidence 64 68888888877753
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.85 E-value=6.9e-06 Score=66.80 Aligned_cols=43 Identities=5% Similarity=0.043 Sum_probs=30.8
Q ss_pred CHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048321 531 NIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRNQ 580 (641)
Q Consensus 531 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~~ 580 (641)
+++.|.+.++++++++|++...+..|+... .|.++..+..+.|
T Consensus 101 ~~~~A~~~~~kal~l~P~~~~~~~~L~~~~-------ka~~~~~e~~k~~ 143 (145)
T d1zu2a1 101 NFDLATQFFQQAVDEQPDNTHYLKSLEMTA-------KAPQLHAEAYKQG 143 (145)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-------THHHHHHHHHHSS
T ss_pred hHHHhhhhhhcccccCCCHHHHHHHHHHHH-------HHHHHHHHHHHHh
Confidence 468899999999999999877777776654 4444444444444
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.79 E-value=4.7e-05 Score=64.09 Aligned_cols=110 Identities=11% Similarity=-0.075 Sum_probs=80.0
Q ss_pred HHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCCh--HHHHHHHHhCCCCCChhHHHHHHHHHHHcC
Q 048321 453 LQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKL--KEALDFVQSMPIKSDAGIWGTLLCACKIHL 530 (641)
Q Consensus 453 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~--~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g 530 (641)
.......|++++|.+.|.....-+....-++. ..+.+ .++..+ +. .....+..+...+...|
T Consensus 18 g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~-----------~~~~w~~~~r~~l-~~----~~~~a~~~la~~~~~~g 81 (179)
T d2ff4a2 18 GVHAAAAGRFEQASRHLSAALREWRGPVLDDL-----------RDFQFVEPFATAL-VE----DKVLAHTAKAEAEIACG 81 (179)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGG-----------TTSTTHHHHHHHH-HH----HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccccccC-----------cchHHHHHHHHHH-HH----HHHHHHHHHHHHHHHCC
Confidence 34667888999999999988854331011110 00111 111111 11 12346788889999999
Q ss_pred CHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHh
Q 048321 531 NIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKR 578 (641)
Q Consensus 531 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~ 578 (641)
++++|+..++++++++|.+...|..++.+|.+.|++++|.+.++.+..
T Consensus 82 ~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~ 129 (179)
T d2ff4a2 82 RASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 129 (179)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998754
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.74 E-value=0.0045 Score=55.47 Aligned_cols=159 Identities=16% Similarity=0.123 Sum_probs=92.8
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCC-CCCcchHHHHHHHHHh----CCChhHHHHHHHHHHHcCCCCCHHHHHH-H
Q 048321 278 DVSVINTLISMYSKCGDIDSARVLFDGIC-DRTRVSWTAMISGYAQ----KGDLDEALRLFFAMEAAGELPDLVTVLS-M 351 (641)
Q Consensus 278 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~t~~~-l 351 (641)
|+..+..|...+.+.+++++|++.|++.. ..+..++..|...|.. ..+...|...+......+...-...+.. .
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~~a~~~l~~~~ 80 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLY 80 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccccchhhcccccc
Confidence 45667778888889999999999999873 3466677777777776 6688899999988877653222222211 1
Q ss_pred HHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh----cCCHHHHHHHHhhCCC-CChhHHHHHHHHHHH---
Q 048321 352 ISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSK----CGSIGDARELFYALPE-KIVVSWTTMIAGCAL--- 423 (641)
Q Consensus 352 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~--- 423 (641)
........+.+.+...++...+.|... ....+...+.. ......|...+..... .+...+..+...+..
T Consensus 81 ~~~~~~~~~~~~a~~~~~~a~~~g~~~---a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~~~~~ 157 (265)
T d1ouva_ 81 YSGQGVSQNTNKALQYYSKACDLKYAE---GCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRG 157 (265)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTTCHH---HHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSS
T ss_pred ccccccchhhHHHHHHHhhhhhhhhhh---HHHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhhhhccCCC
Confidence 122344567788888888888766321 22222222221 2334445444444332 344455555554443
Q ss_pred -cCChHHHHHHHHHHHH
Q 048321 424 -NGEFVEALDLFHQLME 439 (641)
Q Consensus 424 -~g~~~~A~~~~~~m~~ 439 (641)
..+...+...++...+
T Consensus 158 ~~~~~~~~~~~~~~a~~ 174 (265)
T d1ouva_ 158 TPKDLKKALASYDKACD 174 (265)
T ss_dssp SCCCHHHHHHHHHHHHH
T ss_pred cccccccchhhhhcccc
Confidence 2233444444444443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.73 E-value=0.00015 Score=57.13 Aligned_cols=93 Identities=16% Similarity=0.144 Sum_probs=58.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCC-----hhHH
Q 048321 414 WTTMIAGCALNGEFVEALDLFHQLMELDLRPN-RVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPE-----LDHY 487 (641)
Q Consensus 414 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~-----~~~~ 487 (641)
+..+...+.+.|++++|+..|++.++. .|+ ...+..+..+|.+.|++++|.+.++.+++..+ -.+. ..+|
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~--~~~~~~~~~a~~~ 82 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGR--ENREDYRQIAKAY 82 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH--HSTTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCc--ccHHHHHHHHHHH
Confidence 445566677778888888888877775 343 44666677777778888888887777764322 1111 1245
Q ss_pred HHHHHHhhccCChHHHHHHHHhC
Q 048321 488 SCMADLLGRKGKLKEALDFVQSM 510 (641)
Q Consensus 488 ~~l~~~~~~~g~~~~A~~~~~~~ 510 (641)
..+...+...+++++|++.|++.
T Consensus 83 ~~lg~~~~~~~~~~~A~~~~~ka 105 (128)
T d1elra_ 83 ARIGNSYFKEEKYKDAIHFYNKS 105 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHH
Confidence 55556666666666666666553
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.68 E-value=4.8e-05 Score=62.64 Aligned_cols=63 Identities=10% Similarity=-0.226 Sum_probs=50.2
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCC-----------CccHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 517 GIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHS-----------AAPYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 517 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
..|+.+..++...|++++|...+++++++.|.. ...|..++.+|...|++++|.+.+++..+.
T Consensus 56 ~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 56 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467778888888888888888888887664421 225778999999999999999999987653
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.66 E-value=0.021 Score=52.38 Aligned_cols=84 Identities=11% Similarity=0.117 Sum_probs=38.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHH
Q 048321 414 WTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADL 493 (641)
Q Consensus 414 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~ 493 (641)
|..++-.|.+.|++++|+.+ |.+. .|+..-....+..+.+.++.+...++.....+ ..|+ ..+.++..
T Consensus 177 ~~elv~Ly~~~~~~~~A~~~---~i~~--~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~-----~~p~--~i~~lL~~ 244 (336)
T d1b89a_ 177 WAELVFLYDKYEEYDNAIIT---MMNH--PTDAWKEGQFKDIITKVANVELYYRAIQFYLE-----FKPL--LLNDLLMV 244 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHH---HHHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHH-----HCGG--GHHHHHHH
T ss_pred hHHHHHHHHhcCCHHHHHHH---HHHc--chhhhhHHHHHHHHHccCChHHHHHHHHHHHH-----cCHH--HHHHHHHH
Confidence 44455555555666655543 2222 33333444444555555555555544444442 1132 23444444
Q ss_pred hhccCChHHHHHHHHh
Q 048321 494 LGRKGKLKEALDFVQS 509 (641)
Q Consensus 494 ~~~~g~~~~A~~~~~~ 509 (641)
....-+..+..+.+++
T Consensus 245 v~~~~d~~r~V~~~~k 260 (336)
T d1b89a_ 245 LSPRLDHTRAVNYFSK 260 (336)
T ss_dssp HGGGCCHHHHHHHHHH
T ss_pred hccCCCHHHHHHHHHh
Confidence 4444444444444443
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.62 E-value=5.8e-05 Score=55.89 Aligned_cols=74 Identities=8% Similarity=0.030 Sum_probs=55.9
Q ss_pred HHHHHHHHhhccCChHHHHHHHHhCC--------CCCC-hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHH
Q 048321 486 HYSCMADLLGRKGKLKEALDFVQSMP--------IKSD-AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEM 556 (641)
Q Consensus 486 ~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 556 (641)
.+--++..+.+.|++++|+..|++.. ..++ ..++..|..++.+.|++++|+..++++++++|+++.++..+
T Consensus 7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl 86 (95)
T d1tjca_ 7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHH
Confidence 34456666777777777777776643 1122 45788899999999999999999999999999998887777
Q ss_pred HHH
Q 048321 557 ANK 559 (641)
Q Consensus 557 ~~~ 559 (641)
..+
T Consensus 87 ~~~ 89 (95)
T d1tjca_ 87 KYF 89 (95)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.55 E-value=5.7e-05 Score=67.93 Aligned_cols=125 Identities=13% Similarity=0.051 Sum_probs=86.5
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCC-hhHHHHHHHHhhccCC
Q 048321 422 ALNGEFVEALDLFHQLMELDLRPNR-VTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPE-LDHYSCMADLLGRKGK 499 (641)
Q Consensus 422 ~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 499 (641)
.+.|++++|+..+++.++. .|+. ..+..+...++..|++++|.+.|+...+ +.|+ ...+..+..++...+.
T Consensus 7 L~~G~l~eAl~~l~~al~~--~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~-----l~P~~~~~~~~l~~ll~a~~~ 79 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIK-----LFPEYLPGASQLRHLVKAAQA 79 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-----HCGGGHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----hCCCcHHHHHHHHHHHHhccc
Confidence 4568999999999999886 5655 5777888889999999999999998885 3355 4455555566655555
Q ss_pred hHHHHHHHHhCC--CCCC-hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccH
Q 048321 500 LKEALDFVQSMP--IKSD-AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPY 553 (641)
Q Consensus 500 ~~~A~~~~~~~~--~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 553 (641)
.+++..-..... .+|+ ...+......+...|+.++|...++++.++.|..+..+
T Consensus 80 ~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~ 136 (264)
T d1zbpa1 80 RKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLA 136 (264)
T ss_dssp HHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEE
T ss_pred cHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCccc
Confidence 555443332211 2232 22334445567788999999999999999998876554
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.52 E-value=0.00021 Score=52.74 Aligned_cols=63 Identities=6% Similarity=-0.182 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCC-------ccHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 517 GIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSA-------APYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 517 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-------~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
..+..+...+...|+++.|+..+++++++.|.++ .++..++.+|.+.|++++|.+.++++.+.
T Consensus 6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 3455678889999999999999999998866543 45888999999999999999999998864
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.30 E-value=7.3e-05 Score=67.24 Aligned_cols=120 Identities=12% Similarity=0.003 Sum_probs=87.2
Q ss_pred HhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCChHHHHHHHHhCC-CCCC-hhHHHHHHHHHHHcCCHH
Q 048321 456 CTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKLKEALDFVQSMP-IKSD-AGIWGTLLCACKIHLNIE 533 (641)
Q Consensus 456 ~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~ll~~~~~~g~~~ 533 (641)
..+.|++++|+..++..++..+ .+...+..++.+|+..|++++|...++... ..|+ ...+..+...+...+..+
T Consensus 6 aL~~G~l~eAl~~l~~al~~~P----~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~ 81 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKASP----KDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARK 81 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCT----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccH
Confidence 3567999999999999997544 568999999999999999999999999976 5564 445555555555444444
Q ss_pred HHHHHHHHh-HccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 048321 534 IGEYVAYCL-FKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRN 579 (641)
Q Consensus 534 ~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~ 579 (641)
++.....+. ...+|++...+...+.++...|++++|.+.++++.+.
T Consensus 82 ~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 82 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 333222221 1223444455667788899999999999999888664
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.25 E-value=0.00069 Score=55.34 Aligned_cols=65 Identities=11% Similarity=-0.096 Sum_probs=41.8
Q ss_pred HHHHHHHHhhccCChHHHHHHHHhCC--------CCCC-----hhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCC
Q 048321 486 HYSCMADLLGRKGKLKEALDFVQSMP--------IKSD-----AGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSA 550 (641)
Q Consensus 486 ~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 550 (641)
.|+.+..+|...|++++|+..+++.. ..++ ...+..+..++...|++++|+..+++++++.|...
T Consensus 57 ~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~ 134 (156)
T d2hr2a1 57 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK 134 (156)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence 34455555555565555555554432 1111 12466678888999999999999999998876543
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.22 E-value=5e-05 Score=76.05 Aligned_cols=108 Identities=8% Similarity=-0.013 Sum_probs=52.0
Q ss_pred HHHHHHHHHhcCcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHH
Q 048321 346 VTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KIVVSWTTMIAGCA 422 (641)
Q Consensus 346 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 422 (641)
..+..+...+.+.|+.+.|...+....+.. ...++..+.+.+...|++++|...|++..+ .+..+|+.+...+.
T Consensus 121 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~ 197 (497)
T d1ya0a1 121 VKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILAS 197 (497)
T ss_dssp ----------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHH
T ss_pred HHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 344445555566666666665555544321 123455566677777777777777776554 24467777777777
Q ss_pred HcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHh
Q 048321 423 LNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACT 457 (641)
Q Consensus 423 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 457 (641)
..|+..+|+..|.+..... +|-..++..|...+.
T Consensus 198 ~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~ 231 (497)
T d1ya0a1 198 SKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALS 231 (497)
T ss_dssp HTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHH
Confidence 7777777777777776643 344455666555543
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.09 E-value=0.0028 Score=52.78 Aligned_cols=118 Identities=10% Similarity=0.021 Sum_probs=81.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHH
Q 048321 414 WTTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADL 493 (641)
Q Consensus 414 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~ 493 (641)
...........|++++|.+.|.+.... .+.... ..+ ..+.+ +...-..+.. .....+..++..
T Consensus 14 ~~~~g~~~~~~g~~e~A~~~~~~AL~l--~rG~~l-----~~~-~~~~w--~~~~r~~l~~-------~~~~a~~~la~~ 76 (179)
T d2ff4a2 14 EKTAGVHAAAAGRFEQASRHLSAALRE--WRGPVL-----DDL-RDFQF--VEPFATALVE-------DKVLAHTAKAEA 76 (179)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTT--CCSSTT-----GGG-TTSTT--HHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhh--Cccccc-----ccC-cchHH--HHHHHHHHHH-------HHHHHHHHHHHH
Confidence 344456778899999999999999874 333210 000 01111 1111111111 224567778899
Q ss_pred hhccCChHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHh-------HccCCC
Q 048321 494 LGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHLNIEIGEYVAYCL-------FKLEPH 548 (641)
Q Consensus 494 ~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~-------~~~~p~ 548 (641)
+.+.|++++|+..++.+. .+-+...|..++.++...|+.++|++.|+++ +.++|.
T Consensus 77 ~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~ 140 (179)
T d2ff4a2 77 EIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG 140 (179)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence 999999999999999976 4447789999999999999999999999887 556775
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.26 E-value=0.13 Score=38.02 Aligned_cols=141 Identities=12% Similarity=-0.021 Sum_probs=97.3
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHHHhhccCCh
Q 048321 421 CALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMADLLGRKGKL 500 (641)
Q Consensus 421 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 500 (641)
+...|..++..++..+.... .+..-|+.++.-....-+-+...+.++..-+-+. +..++++
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FD----------------ls~C~Nl 72 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFD----------------LDKCQNL 72 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSC----------------GGGCSCT
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcC----------------chhhhcH
Confidence 34567778888888777763 2344555555554555555555566655544333 2345555
Q ss_pred HHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048321 501 KEALDFVQSMPIKSDAGIWGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGVANIRTMMKRNQ 580 (641)
Q Consensus 501 ~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~m~~~~ 580 (641)
......+-.+- .+...+..-+....++|.-+.-.++++.+++-+.-+|+....++++|.+.|.-.++.+++.+..++|
T Consensus 73 k~vv~C~~~~n--~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G 150 (161)
T d1wy6a1 73 KSVVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG 150 (161)
T ss_dssp HHHHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 55555554443 2334556667788889999999999999888766668999999999999999999999999999998
Q ss_pred Cc
Q 048321 581 VK 582 (641)
Q Consensus 581 ~~ 582 (641)
++
T Consensus 151 ~K 152 (161)
T d1wy6a1 151 EK 152 (161)
T ss_dssp CH
T ss_pred HH
Confidence 75
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.73 E-value=0.021 Score=42.95 Aligned_cols=32 Identities=16% Similarity=0.096 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhHccCCCC
Q 048321 518 IWGTLLCACKIHLNIEIGEYVAYCLFKLEPHS 549 (641)
Q Consensus 518 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 549 (641)
.|-.|.-+|.+.|+++.|.+.++++++++|+|
T Consensus 75 ~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n 106 (124)
T d2pqrb1 75 CLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 106 (124)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCCc
Confidence 33444444555555555555555555555543
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=94.75 E-value=1.8 Score=41.05 Aligned_cols=52 Identities=10% Similarity=-0.065 Sum_probs=28.0
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHH
Q 048321 286 ISMYSKCGDIDSARVLFDGICDRTRVSWTAMISGYAQKGDLDEALRLFFAMEA 338 (641)
Q Consensus 286 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 338 (641)
+..+.+.++++.....+..- ..+...-.....+....|+.++|...+..+=.
T Consensus 79 l~~L~~~~~w~~~~~~~~~~-p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~ 130 (450)
T d1qsaa1 79 VNELARREDWRGLLAFSPEK-PGTTEAQCNYYYAKWNTGQSEEAWQGAKELWL 130 (450)
T ss_dssp HHHHHHTTCHHHHHHHCCSC-CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred HHHHHhccCHHHHHHhccCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence 44556666666655554332 12333334455566667777766666555433
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=94.58 E-value=0.16 Score=39.17 Aligned_cols=81 Identities=5% Similarity=-0.153 Sum_probs=46.9
Q ss_pred ChHHHHHHHHhCCCCCChhHHHHHHHHHHH----cCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHh----cCCchHHH
Q 048321 499 KLKEALDFVQSMPIKSDAGIWGTLLCACKI----HLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYAL----GGRWDGVA 570 (641)
Q Consensus 499 ~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~eA~ 570 (641)
+.++|++++++....-++.....|...|.. ..|.++|.+.++++.+. .++.+...|+.+|.. ..+.++|.
T Consensus 38 ~~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~ 115 (133)
T d1klxa_ 38 NKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAV 115 (133)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred CHHHHHHHHhhhhcccchhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHH
Confidence 344444444443322233333334333332 34677777777777665 345667777777776 45677888
Q ss_pred HHHHHHHhCCC
Q 048321 571 NIRTMMKRNQV 581 (641)
Q Consensus 571 ~~~~~m~~~~~ 581 (641)
+++++..+.|.
T Consensus 116 ~~~~~Aa~~G~ 126 (133)
T d1klxa_ 116 KTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHCCC
Confidence 88887776653
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.95 E-value=0.18 Score=37.78 Aligned_cols=67 Identities=4% Similarity=-0.086 Sum_probs=49.0
Q ss_pred CChhHHHHHHHHHHHcC---CHHHHHHHHHHhHccCCCCC-ccHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 048321 514 SDAGIWGTLLCACKIHL---NIEIGEYVAYCLFKLEPHSA-APYVEMANKYALGGRWDGVANIRTMMKRNQ 580 (641)
Q Consensus 514 p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~eA~~~~~~m~~~~ 580 (641)
|...+...+.+++.+.. +.++|+.+++.+++.+|.+. ..+..|+-.|.+.|++++|.+.++.+.+..
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ie 103 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 103 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 34445566666666543 56688888888888887653 677888888888999999988888876643
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=93.69 E-value=3 Score=39.43 Aligned_cols=350 Identities=10% Similarity=-0.065 Sum_probs=171.0
Q ss_pred HHHHhHcCCChhHHHHHHhcccCCCCCchhHHHHHHHHhcCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHhcCCCchH
Q 048321 182 WISSYAKCDDLKMAELVFCGIEERLRTVVSWNSMVAGCTYGDKFDDSLNFYRHMMYNGFRLDVTTVVSLLSSFVCPEALV 261 (641)
Q Consensus 182 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 261 (641)
.+..+.+.+++......+.. .+.+...-.....+....|+.++|...+...-..|.. ..+
T Consensus 78 ~l~~L~~~~~w~~~~~~~~~---~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~-----------------~p~ 137 (450)
T d1qsaa1 78 FVNELARREDWRGLLAFSPE---KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-----------------QPN 137 (450)
T ss_dssp HHHHHHHTTCHHHHHHHCCS---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-----------------CCT
T ss_pred HHHHHHhccCHHHHHHhccC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-----------------Cch
Confidence 34566677777766554432 2234444455667778888888888887777655421 122
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCC
Q 048321 262 QGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARVLFDGICDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGE 341 (641)
Q Consensus 262 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 341 (641)
.+..++..+.+.|. .+...+-.-+......|+...|..+...+...........+...... ..+..... ..
T Consensus 138 ~c~~l~~~~~~~~~-lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~p---~~~~~~~~---~~-- 208 (450)
T d1qsaa1 138 ACDKLFSVWRASGK-QDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNP---NTVLTFAR---TT-- 208 (450)
T ss_dssp HHHHHHHHHHHTTC-SCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCG---GGHHHHHH---HS--
T ss_pred HHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhCh---HhHHHHHh---cC--
Confidence 23344444444442 33333334445555667777777777776544433444444433221 11111111 11
Q ss_pred CCCHHHHHHHHHHhcC--cCchHHHHHHHHHHHHcCCCCchhH---HHHHHHHHHhcCCHHHHHHHHhhCCC--CChhHH
Q 048321 342 LPDLVTVLSMISGCGQ--SGALELGKWFDNYACSGGLKDNVMV---CNALIDMYSKCGSIGDARELFYALPE--KIVVSW 414 (641)
Q Consensus 342 ~p~~~t~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~ 414 (641)
.++......+..+..+ ..+.+.+...+.............. ...+...+...+..+.|...+..... .+....
T Consensus 209 ~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 288 (450)
T d1qsaa1 209 GATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLI 288 (450)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHH
T ss_pred CCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHH
Confidence 1222222222222222 1345555555555544321111111 11112222234455555555543322 222222
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHH-H
Q 048321 415 TTMIAGCALNGEFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMAD-L 493 (641)
Q Consensus 415 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~-~ 493 (641)
.-.+......+++..+...+..|-... .-...-.--+..++...|+.++|...|..+.. .++ .|..|.. .
T Consensus 289 ~w~~~~al~~~~~~~~~~~~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~------~~~--fYG~LAa~~ 359 (450)
T d1qsaa1 289 ERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQ------QRG--FYPMVAAQR 359 (450)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT------SCS--HHHHHHHHH
T ss_pred HHHHHHHHHcCChHHHHHHHHhcCccc-ccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc------CCC--hHHHHHHHH
Confidence 233344455677777777776664211 11112223445667777777777777777652 132 3443332 1
Q ss_pred hhccCChHHHHHHHHhCCCCCChh-H---HHHHHHHHHHcCCHHHHHHHHHHhHccCCCCCccHHHHHHHHHhcCCchHH
Q 048321 494 LGRKGKLKEALDFVQSMPIKSDAG-I---WGTLLCACKIHLNIEIGEYVAYCLFKLEPHSAAPYVEMANKYALGGRWDGV 569 (641)
Q Consensus 494 ~~~~g~~~~A~~~~~~~~~~p~~~-~---~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA 569 (641)
++..-.+.- ...+..++.. . -..-+..+...|....|...+..+.+.. ++.-...++.+..+.|.++.|
T Consensus 360 Lg~~~~~~~-----~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~--~~~~~~~la~lA~~~g~~~~a 432 (450)
T d1qsaa1 360 IGEEYELKI-----DKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLS 432 (450)
T ss_dssp TTCCCCCCC-----CCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHH
T ss_pred cCCCCCCCc-----CCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCChhHH
Confidence 211101000 0001111110 0 1122345667888888888888777543 345677788888888999888
Q ss_pred HHHHHHH
Q 048321 570 ANIRTMM 576 (641)
Q Consensus 570 ~~~~~~m 576 (641)
+......
T Consensus 433 I~a~~~~ 439 (450)
T d1qsaa1 433 VQATIAG 439 (450)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 8776554
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=93.60 E-value=0.61 Score=35.55 Aligned_cols=46 Identities=17% Similarity=0.102 Sum_probs=22.9
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcC
Q 048321 325 DLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGG 375 (641)
Q Consensus 325 ~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 375 (641)
++++|+..|++..+.|.. .. ...+ +.....+.++|..++....+.|
T Consensus 8 d~~~A~~~~~kaa~~g~~-~a--~~~l--~~~~~~~~~~a~~~~~~aa~~g 53 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNEM-FG--CLSL--VSNSQINKQKLFQYLSKACELN 53 (133)
T ss_dssp HHHHHHHHHHHHHHTTCT-TH--HHHH--HTCTTSCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCCCh-hh--hhhh--ccccccCHHHHHHHHhhhhccc
Confidence 455666666666655422 11 1111 1233345566666666665554
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=90.05 E-value=0.79 Score=32.00 Aligned_cols=63 Identities=22% Similarity=0.282 Sum_probs=49.8
Q ss_pred ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHhhhCCCCCCChhHHHHHHH
Q 048321 426 EFVEALDLFHQLMELDLRPNRVTFLAVLQACTHTGFLEKGWAISIIQYDDKGISYNPELDHYSCMAD 492 (641)
Q Consensus 426 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~p~~~~~~~l~~ 492 (641)
+.-++.+-++.+....+.|++....+.|.||.+.+++..|.++|+..+.+.| ++...|..++.
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~----~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG----PHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT----TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc----CcHHHHHHHHH
Confidence 4456666677777778889999999999999999999999999999887665 45566666553
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=88.99 E-value=3.2 Score=30.51 Aligned_cols=63 Identities=10% Similarity=0.013 Sum_probs=38.9
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCchHHHHHHHHHHHHcCC
Q 048321 313 WTAMISGYAQKGDLDEALRLFFAMEAAGELPDLVTVLSMISGCGQSGALELGKWFDNYACSGGL 376 (641)
Q Consensus 313 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 376 (641)
.+.-++...+.|+-+.-.++++.+.+. -+|++..+..+..+|.+.|+..++..++.+.-+.|+
T Consensus 89 vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 89 VNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 444556666666666666666665553 355666666666667777777766666666666654
|